NIDE_RS09545 449c404b35f2607b49c461bd74b3e8fe 393 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 299 376 9.9E-6 T 23-04-2016 NIDE_RS09545 449c404b35f2607b49c461bd74b3e8fe 393 SUPERFAMILY SSF52833 301 387 3.58E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS09545 449c404b35f2607b49c461bd74b3e8fe 393 SUPERFAMILY SSF53800 3 247 4.69E-46 T 23-04-2016 NIDE_RS09545 449c404b35f2607b49c461bd74b3e8fe 393 PANTHER PTHR33542:SF2 1 297 5.5E-64 T 23-04-2016 NIDE_RS09545 449c404b35f2607b49c461bd74b3e8fe 393 PANTHER PTHR33542 1 297 5.5E-64 T 23-04-2016 NIDE_RS09545 449c404b35f2607b49c461bd74b3e8fe 393 Gene3D G3DSA:3.40.50.1400 2 121 5.0E-29 T 23-04-2016 NIDE_RS09545 449c404b35f2607b49c461bd74b3e8fe 393 Gene3D G3DSA:3.40.50.1400 127 248 8.7E-25 T 23-04-2016 NIDE_RS09545 449c404b35f2607b49c461bd74b3e8fe 393 Pfam PF01903 CbiX 136 239 3.3E-18 T 23-04-2016 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS09545 449c404b35f2607b49c461bd74b3e8fe 393 Pfam PF01903 CbiX 10 111 2.0E-23 T 23-04-2016 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS09545 449c404b35f2607b49c461bd74b3e8fe 393 Gene3D G3DSA:3.40.30.10 301 388 2.2E-26 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 Gene3D G3DSA:2.60.40.1180 539 635 1.2E-19 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 SUPERFAMILY SSF51011 539 635 3.74E-15 T 23-04-2016 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 PANTHER PTHR10357 509 636 1.5E-88 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 PANTHER PTHR10357 14 189 1.5E-88 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 PANTHER PTHR10357 222 482 1.5E-88 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 13 91 1.0E-14 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 Gene3D G3DSA:3.20.20.80 225 525 1.1E-74 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 Gene3D G3DSA:3.20.20.80 118 192 1.1E-74 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 SUPERFAMILY SSF81296 6 111 1.28E-22 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 Pfam PF00128 Alpha amylase, catalytic domain 218 257 2.5E-4 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 SUPERFAMILY SSF51445 230 531 1.17E-75 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 SUPERFAMILY SSF51445 103 190 1.17E-75 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 SMART SM00642 128 507 7.4E-8 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 Gene3D G3DSA:2.60.40.10 6 97 6.9E-25 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 541 635 4.3E-11 T 23-04-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 PANTHER PTHR10357:SF110 509 636 1.5E-88 T 23-04-2016 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 PANTHER PTHR10357:SF110 14 189 1.5E-88 T 23-04-2016 NIDE_RS17210 cdabc39cf8dd844e5cff556e2971033d 636 PANTHER PTHR10357:SF110 222 482 1.5E-88 T 23-04-2016 NIDE_RS06615 3b65df3a0fc2b916bdd453c8d420da42 378 Pfam PF01264 Chorismate synthase 10 345 3.8E-136 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS06615 3b65df3a0fc2b916bdd453c8d420da42 378 Gene3D G3DSA:3.60.150.10 10 353 3.4E-154 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS06615 3b65df3a0fc2b916bdd453c8d420da42 378 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS06615 3b65df3a0fc2b916bdd453c8d420da42 378 SUPERFAMILY SSF103263 4 353 1.7E-144 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS06615 3b65df3a0fc2b916bdd453c8d420da42 378 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 36.443 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS06615 3b65df3a0fc2b916bdd453c8d420da42 378 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS06615 3b65df3a0fc2b916bdd453c8d420da42 378 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 1.8E-138 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS06615 3b65df3a0fc2b916bdd453c8d420da42 378 PIRSF PIRSF001456 3 366 1.1E-136 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS06615 3b65df3a0fc2b916bdd453c8d420da42 378 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS06615 3b65df3a0fc2b916bdd453c8d420da42 378 PANTHER PTHR21085 2 351 1.5E-202 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS17540 37bda465488f3164f00a0f2cc60257c9 296 SUPERFAMILY SSF50494 38 206 1.05E-17 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS17540 37bda465488f3164f00a0f2cc60257c9 296 Gene3D G3DSA:2.40.10.10 139 213 3.3E-8 T 23-04-2016 NIDE_RS17540 37bda465488f3164f00a0f2cc60257c9 296 Pfam PF13365 Trypsin-like peptidase domain 40 207 1.1E-12 T 23-04-2016 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 2 432 1.2E-124 T 23-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 SUPERFAMILY SSF46785 393 486 1.78E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 SUPERFAMILY SSF47819 521 595 1.81E-22 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 Pfam PF09382 RQC domain 396 498 2.2E-18 T 23-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 PANTHER PTHR13710:SF81 2 596 1.4E-209 T 23-04-2016 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 Pfam PF00570 HRDC domain 525 591 7.8E-23 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 Gene3D G3DSA:3.40.50.300 1 171 5.7E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 108 117 - T 23-04-2016 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site GO:0003676|GO:0005524|GO:0008026 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 Gene3D G3DSA:1.10.150.80 524 587 1.1E-19 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 Gene3D G3DSA:3.40.50.300 174 315 1.3E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 SMART SM00487 2 185 4.6E-19 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 Pfam PF00271 Helicase conserved C-terminal domain 193 301 2.9E-19 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 Pfam PF16124 RecQ zinc-binding 313 380 2.3E-9 T 23-04-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 Pfam PF00270 DEAD/DEAH box helicase 2 155 1.7E-15 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 SMART SM00490 220 301 1.5E-26 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 SUPERFAMILY SSF52540 33 323 6.2E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 PANTHER PTHR13710 2 596 1.4E-209 T 23-04-2016 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 SMART SM00956 393 496 1.6E-11 T 23-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 SMART SM00341 521 596 1.8E-16 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 NIDE_RS18550 bf052f4416e2f68fb73524547c03cf62 596 Gene3D G3DSA:1.10.10.10 316 498 6.3E-37 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 SUPERFAMILY SSF52210 123 286 3.14E-51 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 PANTHER PTHR11117 2 288 1.3E-178 T 23-04-2016 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 SMART SM00881 4 100 1.3E-38 T 23-04-2016 IPR003781 CoA-binding GO:0048037 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 SUPERFAMILY SSF51735 2 122 6.53E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 Pfam PF02629 CoA binding domain 6 99 6.1E-32 T 23-04-2016 IPR003781 CoA-binding GO:0048037 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 PIRSF PIRSF001553 1 290 1.7E-131 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 Pfam PF00549 CoA-ligase 151 271 1.1E-18 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 Gene3D G3DSA:3.40.50.720 2 119 9.3E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 23-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 8.9E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 8.9E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 8.9E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 8.9E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 Gene3D G3DSA:3.40.50.261 120 287 3.7E-72 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 287 2.2E-140 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03870 1ea4e857cf66e0fd9bdd40190697e3da 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 Gene3D G3DSA:3.40.50.1480 347 417 2.7E-95 T 23-04-2016 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 Gene3D G3DSA:3.40.50.1480 2 186 2.7E-95 T 23-04-2016 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 SUPERFAMILY SSF51735 185 347 4.42E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 Gene3D G3DSA:3.40.50.720 187 345 1.3E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 185 345 6.4E-54 T 23-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 74 88 - T 23-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 3 418 7.0E-197 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 SMART SM00996 2 417 1.1E-144 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 PIRSF PIRSF001109 1 418 4.7E-183 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 SUPERFAMILY SSF52283 347 418 2.95E-96 T 23-04-2016 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 SUPERFAMILY SSF52283 2 184 2.95E-96 T 23-04-2016 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 2 135 4.2E-36 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 139 412 1.7E-27 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 1 418 47.651 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 207 223 - T 23-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 SMART SM00997 185 346 1.0E-102 T 23-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS03880 adbdd858e028a5f9d3b85e62a35d3011 418 PANTHER PTHR23420 2 417 3.7E-254 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 537 634 4.2E-20 T 23-04-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 PANTHER PTHR10357:SF160 15 635 0.0 T 23-04-2016 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 PANTHER PTHR10357 15 635 0.0 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 PIRSF PIRSF000463 2 637 4.6E-274 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 Gene3D G3DSA:3.20.20.80 152 520 4.6E-87 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 SMART SM00642 157 510 1.9E-5 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 SUPERFAMILY SSF51445 86 525 5.28E-110 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 15 633 1.9E-273 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 Gene3D G3DSA:2.60.40.1180 532 634 9.6E-35 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 Pfam PF00128 Alpha amylase, catalytic domain 184 256 2.9E-9 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 Gene3D G3DSA:2.60.40.10 19 128 2.2E-33 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 SUPERFAMILY SSF51011 532 634 1.85E-31 T 23-04-2016 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 7 636 43.881 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 SUPERFAMILY SSF81296 44 100 7.14E-8 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS15855 002d652d9ea7474fc44eb290ad9883a7 637 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 30 114 5.7E-19 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 24 206 3.3E-12 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 Pfam PF00009 Elongation factor Tu GTP binding domain 23 206 3.2E-41 T 23-04-2016 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 76 91 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 Gene3D G3DSA:3.40.50.300 445 614 1.1E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 Pfam PF01583 Adenylylsulphate kinase 466 574 6.0E-13 T 23-04-2016 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 SUPERFAMILY SSF50447 235 323 8.84E-16 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 PANTHER PTHR23115 565 573 1.5E-72 T 23-04-2016 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 PANTHER PTHR23115 7 322 1.5E-72 T 23-04-2016 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 PRINTS PR00315 GTP-binding elongation factor signature 119 130 7.3E-17 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 PRINTS PR00315 GTP-binding elongation factor signature 156 165 7.3E-17 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 PRINTS PR00315 GTP-binding elongation factor signature 83 91 7.3E-17 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 PRINTS PR00315 GTP-binding elongation factor signature 103 113 7.3E-17 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 PRINTS PR00315 GTP-binding elongation factor signature 25 38 7.3E-17 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 24 418 2.8E-103 T 23-04-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 SUPERFAMILY SSF52540 19 249 2.82E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 SUPERFAMILY SSF52540 465 608 8.56E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 Gene3D G3DSA:2.40.30.10 235 349 1.7E-20 T 23-04-2016 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 Pfam PF03143 Elongation factor Tu C-terminal domain 341 429 1.4E-5 T 23-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 SUPERFAMILY SSF50465 327 427 1.51E-20 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 Gene3D G3DSA:2.40.30.10 350 429 1.8E-10 T 23-04-2016 NIDE_RS01900 13d5efe4f920c562c158abb1efcab7bc 626 Gene3D G3DSA:3.40.50.300 13 225 1.2E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15660 b455612a9bfdee60d558aa4d3f8598ba 230 SUPERFAMILY SSF53448 3 226 3.38E-47 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS15660 b455612a9bfdee60d558aa4d3f8598ba 230 Gene3D G3DSA:3.90.550.10 2 226 8.6E-50 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS15660 b455612a9bfdee60d558aa4d3f8598ba 230 PANTHER PTHR22572 2 226 2.1E-44 T 23-04-2016 NIDE_RS15660 b455612a9bfdee60d558aa4d3f8598ba 230 Pfam PF00483 Nucleotidyl transferase 3 223 2.2E-20 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 NIDE_RS15660 b455612a9bfdee60d558aa4d3f8598ba 230 PANTHER PTHR22572:SF15 2 226 2.1E-44 T 23-04-2016 NIDE_RS19055 7467404a9550408dab849d754d813579 280 SUPERFAMILY SSF69618 8 264 5.23E-42 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS19055 7467404a9550408dab849d754d813579 280 Gene3D G3DSA:3.40.50.10090 5 135 1.3E-19 T 23-04-2016 NIDE_RS19055 7467404a9550408dab849d754d813579 280 Gene3D G3DSA:3.40.50.10090 137 268 8.9E-25 T 23-04-2016 NIDE_RS19055 7467404a9550408dab849d754d813579 280 PANTHER PTHR40082 1 280 2.7E-26 T 23-04-2016 NIDE_RS19055 7467404a9550408dab849d754d813579 280 Pfam PF02602 Uroporphyrinogen-III synthase HemD 21 263 2.8E-32 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS07290 996e6cf5f1d8f2b2a40ae48f8337b5a2 124 Gene3D G3DSA:3.40.30.10 7 118 5.4E-39 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS07290 996e6cf5f1d8f2b2a40ae48f8337b5a2 124 TIGRFAM TIGR01068 thioredoxin: thioredoxin 18 115 1.4E-39 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NIDE_RS07290 996e6cf5f1d8f2b2a40ae48f8337b5a2 124 PANTHER PTHR10438 18 123 6.0E-42 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NIDE_RS07290 996e6cf5f1d8f2b2a40ae48f8337b5a2 124 SUPERFAMILY SSF52833 12 119 5.41E-40 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS07290 996e6cf5f1d8f2b2a40ae48f8337b5a2 124 PIRSF PIRSF000077 12 117 1.1E-41 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NIDE_RS07290 996e6cf5f1d8f2b2a40ae48f8337b5a2 124 PRINTS PR00421 Thioredoxin family signature 81 92 2.2E-8 T 23-04-2016 NIDE_RS07290 996e6cf5f1d8f2b2a40ae48f8337b5a2 124 PRINTS PR00421 Thioredoxin family signature 33 41 2.2E-8 T 23-04-2016 NIDE_RS07290 996e6cf5f1d8f2b2a40ae48f8337b5a2 124 PRINTS PR00421 Thioredoxin family signature 41 50 2.2E-8 T 23-04-2016 NIDE_RS07290 996e6cf5f1d8f2b2a40ae48f8337b5a2 124 ProSitePatterns PS00194 Thioredoxin family active site. 34 52 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 NIDE_RS07290 996e6cf5f1d8f2b2a40ae48f8337b5a2 124 Pfam PF00085 Thioredoxin 16 114 4.8E-33 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 Pfam PF02875 Mur ligase family, glutamate ligase domain 289 367 6.6E-7 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 Pfam PF08245 Mur ligase middle domain 47 264 1.4E-9 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 TIGRFAM TIGR01499 folC: bifunctional protein FolC 25 423 4.1E-119 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 Gene3D G3DSA:3.40.1190.10 2 290 2.8E-101 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 PANTHER PTHR11136 13 434 1.6E-139 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 Gene3D G3DSA:3.90.190.20 291 426 3.5E-34 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 PIRSF PIRSF001563 1 429 3.2E-137 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 PANTHER PTHR11136:SF0 13 434 1.6E-139 T 23-04-2016 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 SUPERFAMILY SSF53623 2 289 7.2E-93 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 SUPERFAMILY SSF53244 291 426 9.16E-27 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS07275 10575601458b0738a7b3bddfc54615bb 434 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 138 153 - T 23-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 NIDE_RS18345 f9f7941c808fdf2b2adcd09d7440e10b 127 SUPERFAMILY SSF82649 1 123 1.86E-46 T 23-04-2016 NIDE_RS18345 f9f7941c808fdf2b2adcd09d7440e10b 127 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 124 1.2E-63 T 23-04-2016 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 NIDE_RS18345 f9f7941c808fdf2b2adcd09d7440e10b 127 Gene3D G3DSA:3.90.1010.10 2 125 3.8E-55 T 23-04-2016 NIDE_RS18345 f9f7941c808fdf2b2adcd09d7440e10b 127 Pfam PF01592 NifU-like N terminal domain 2 124 1.8E-54 T 23-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 NIDE_RS18345 f9f7941c808fdf2b2adcd09d7440e10b 127 PANTHER PTHR10093 1 127 9.0E-83 T 23-04-2016 NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 PANTHER PTHR26402:SF117 8 137 2.3E-12 T 23-04-2016 NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 PANTHER PTHR26402 160 254 2.3E-12 T 23-04-2016 NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 Pfam PF00072 Response regulator receiver domain 11 117 4.5E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 PANTHER PTHR26402:SF117 160 254 2.3E-12 T 23-04-2016 NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 SUPERFAMILY SSF52172 8 131 1.31E-20 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 SUPERFAMILY SSF55874 220 298 6.17E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 SUPERFAMILY SSF55874 167 192 6.17E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 Pfam PF13581 Histidine kinase-like ATPase domain 164 295 3.1E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 SMART SM00448 8 119 2.1E-10 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 Gene3D G3DSA:3.40.50.2300 10 127 9.1E-19 T 23-04-2016 NIDE_RS10890 f241e170de61aa6030f6a522531b5a42 299 PANTHER PTHR26402 8 137 2.3E-12 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 468 1.5E-209 T 23-04-2016 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 PRINTS PR00419 Adrenodoxin reductase family signature 287 301 7.3E-24 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 PRINTS PR00419 Adrenodoxin reductase family signature 147 169 7.3E-24 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 PRINTS PR00419 Adrenodoxin reductase family signature 212 222 7.3E-24 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 PRINTS PR00419 Adrenodoxin reductase family signature 170 183 7.3E-24 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 SUPERFAMILY SSF51971 371 466 4.59E-11 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 Gene3D G3DSA:3.40.50.720 401 474 4.3E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 Gene3D G3DSA:3.40.50.720 149 234 4.3E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 456 2.8E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 Gene3D G3DSA:3.50.50.60 235 400 3.1E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 PANTHER PTHR11938 26 320 2.2E-142 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 PANTHER PTHR11938 336 467 2.2E-142 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 Gene3D G3DSA:1.10.1060.10 2 148 3.1E-36 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 PANTHER PTHR11938:SF75 26 320 2.2E-142 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 PANTHER PTHR11938:SF75 336 467 2.2E-142 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 SUPERFAMILY SSF51971 144 401 2.41E-68 T 23-04-2016 NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 26 130 1.2E-20 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II NIDE_RS15470 3448b710ad70cb8e9763146ae818b0bd 477 SUPERFAMILY SSF46548 5 156 2.98E-33 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 Gene3D G3DSA:2.130.10.10 86 409 6.9E-21 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 SMART SM00320 260 299 140.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 SMART SM00320 353 392 35.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 SMART SM00320 213 252 260.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 SMART SM00320 311 350 0.41 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 PANTHER PTHR30425:SF3 388 507 2.5E-132 T 23-04-2016 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 PANTHER PTHR30425:SF3 1 53 2.5E-132 T 23-04-2016 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 PANTHER PTHR30425:SF3 573 742 2.5E-132 T 23-04-2016 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 SUPERFAMILY SSF50978 119 410 4.81E-21 T 23-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 Gene3D G3DSA:1.10.3720.10 578 739 2.4E-42 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 Gene3D G3DSA:1.10.3720.10 413 505 2.4E-42 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 Gene3D G3DSA:1.10.3720.10 25 48 2.4E-42 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 455 736 6.1E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 SUPERFAMILY SSF161098 436 504 1.4E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 SUPERFAMILY SSF161098 588 674 1.4E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 PANTHER PTHR30425 388 507 2.5E-132 T 23-04-2016 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 PANTHER PTHR30425 1 53 2.5E-132 T 23-04-2016 NIDE_RS11090 b2c71d9b0ca3aaac26324debb30d55cc 742 PANTHER PTHR30425 573 742 2.5E-132 T 23-04-2016 NIDE_RS14210 4f427d3d60a351816be46ff2bb47d9fc 639 SUPERFAMILY SSF47203 282 443 2.42E-28 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 NIDE_RS14210 4f427d3d60a351816be46ff2bb47d9fc 639 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 439 1.2E-22 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 NIDE_RS14210 4f427d3d60a351816be46ff2bb47d9fc 639 PANTHER PTHR10909 48 460 6.2E-72 T 23-04-2016 NIDE_RS14210 4f427d3d60a351816be46ff2bb47d9fc 639 SUPERFAMILY SSF56645 41 289 7.72E-42 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 NIDE_RS14210 4f427d3d60a351816be46ff2bb47d9fc 639 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 48 155 9.7E-19 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 NIDE_RS14210 4f427d3d60a351816be46ff2bb47d9fc 639 PANTHER PTHR10909:SF145 48 460 6.2E-72 T 23-04-2016 NIDE_RS14210 4f427d3d60a351816be46ff2bb47d9fc 639 Gene3D G3DSA:2.40.110.10 158 271 9.9E-21 T 23-04-2016 NIDE_RS14210 4f427d3d60a351816be46ff2bb47d9fc 639 Gene3D G3DSA:1.10.540.10 41 156 1.1E-24 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 NIDE_RS14210 4f427d3d60a351816be46ff2bb47d9fc 639 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 158 270 1.5E-9 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 NIDE_RS14210 4f427d3d60a351816be46ff2bb47d9fc 639 Gene3D G3DSA:1.20.140.10 272 444 7.2E-36 T 23-04-2016 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 Pfam PF00571 CBS domain 379 433 1.7E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 Pfam PF00571 CBS domain 316 364 8.6E-8 T 23-04-2016 IPR000644 CBS domain NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 Gene3D G3DSA:3.10.580.10 314 433 2.1E-23 T 23-04-2016 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 Pfam PF01743 Poly A polymerase head domain 491 618 1.3E-31 T 23-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 643 704 3.7E-8 T 23-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 SMART SM00116 386 433 0.3 T 23-04-2016 IPR000644 CBS domain NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 SMART SM00116 323 371 3.7E-4 T 23-04-2016 IPR000644 CBS domain NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 Gene3D G3DSA:1.10.3090.10 615 833 3.5E-31 T 23-04-2016 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 PANTHER PTHR13734 404 880 1.5E-136 T 23-04-2016 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 SUPERFAMILY SSF54631 309 432 3.29E-27 T 23-04-2016 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 Pfam PF01368 DHH family 3 150 4.5E-8 T 23-04-2016 IPR001667 DDH domain NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 SUPERFAMILY SSF81891 616 882 5.23E-38 T 23-04-2016 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 Gene3D G3DSA:3.30.460.10 467 614 5.9E-41 T 23-04-2016 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 Pfam PF02272 DHHA1 domain 246 302 1.0E-4 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 SUPERFAMILY SSF81301 467 615 8.72E-37 T 23-04-2016 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 SUPERFAMILY SSF64182 3 300 4.71E-51 T 23-04-2016 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 Gene3D G3DSA:3.90.1640.10 3 187 9.7E-25 T 23-04-2016 NIDE_RS05310 9d3b8a1e27f1da108404b8a467b2db9c 891 PANTHER PTHR13734:SF8 404 880 1.5E-136 T 23-04-2016 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SUPERFAMILY SSF55785 806 927 7.63E-20 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00388 944 1010 1.2E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 PANTHER PTHR24423:SF458 52 609 1.1E-165 T 23-04-2016 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 PANTHER PTHR24423:SF458 928 1311 1.1E-165 T 23-04-2016 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1052 1172 8.9E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Pfam PF08448 PAS fold 501 613 2.2E-16 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00448 1193 1306 3.4E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Gene3D G3DSA:3.30.450.40 625 796 7.8E-18 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Gene3D G3DSA:1.10.287.130 940 1006 1.8E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Pfam PF01590 GAF domain 646 787 3.2E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Pfam PF13426 PAS domain 259 355 2.1E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00086 442 483 2.5E-5 T 23-04-2016 IPR001610 PAC motif NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00086 574 611 0.047 T 23-04-2016 IPR001610 PAC motif NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00086 316 357 3.5 T 23-04-2016 IPR001610 PAC motif NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00086 887 929 0.091 T 23-04-2016 IPR001610 PAC motif NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1134 1152 2.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1103 1117 2.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1121 1131 2.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1158 1171 2.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SUPERFAMILY SSF55874 1000 1176 5.76E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00091 816 881 1.1E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00091 243 309 1.9E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00091 369 435 6.3E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00091 495 562 5.3E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00387 1051 1174 1.0E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Pfam PF00072 Response regulator receiver domain 1195 1306 2.0E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 242 364 5.6E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 366 490 7.7E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 814 936 3.8E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 494 617 1.5E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Gene3D G3DSA:3.30.450.20 244 378 2.0E-27 T 23-04-2016 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Gene3D G3DSA:3.30.450.20 379 499 6.0E-28 T 23-04-2016 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SUPERFAMILY SSF55785 354 481 7.26E-28 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 PANTHER PTHR24423 52 609 1.1E-165 T 23-04-2016 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 PANTHER PTHR24423 928 1311 1.1E-165 T 23-04-2016 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SUPERFAMILY SSF55785 254 365 3.22E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Pfam PF08447 PAS fold 393 475 2.1E-13 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Pfam PF00512 His Kinase A (phospho-acceptor) domain 946 1007 2.0E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Gene3D G3DSA:3.40.50.2300 1192 1312 4.2E-30 T 23-04-2016 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SUPERFAMILY SSF52172 1193 1311 1.57E-28 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SUPERFAMILY SSF55781 646 789 3.93E-21 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SUPERFAMILY SSF47384 935 1007 2.55E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Gene3D G3DSA:3.30.450.20 797 927 1.0E-21 T 23-04-2016 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Gene3D G3DSA:3.30.565.10 1012 1172 9.5E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Gene3D G3DSA:3.30.450.20 500 611 6.6E-22 T 23-04-2016 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SUPERFAMILY SSF55785 480 609 3.49E-23 T 23-04-2016 IPR000014 PAS domain NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 Pfam PF00989 PAS fold 817 926 1.4E-15 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS21150 3b756964759258094de1a5b01335a565 1314 SMART SM00065 645 798 1.4E-13 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS02485 b73cfc0a26f318d9789bdde8a59f2541 267 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 6 263 47.928 T 23-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 NIDE_RS02485 b73cfc0a26f318d9789bdde8a59f2541 267 PANTHER PTHR11727 8 264 1.0E-78 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm NIDE_RS02485 b73cfc0a26f318d9789bdde8a59f2541 267 Pfam PF00398 Ribosomal RNA adenine dimethylase 10 259 5.9E-50 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm NIDE_RS02485 b73cfc0a26f318d9789bdde8a59f2541 267 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 38 65 - T 23-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 NIDE_RS02485 b73cfc0a26f318d9789bdde8a59f2541 267 Gene3D G3DSA:1.10.8.100 197 262 2.4E-16 T 23-04-2016 IPR023165 rRNA adenine dimethylase-like NIDE_RS02485 b73cfc0a26f318d9789bdde8a59f2541 267 Gene3D G3DSA:3.40.50.150 10 191 8.3E-64 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02485 b73cfc0a26f318d9789bdde8a59f2541 267 SUPERFAMILY SSF53335 8 263 5.31E-67 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02485 b73cfc0a26f318d9789bdde8a59f2541 267 SMART SM00650 22 191 1.9E-67 T 23-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 NIDE_RS02485 b73cfc0a26f318d9789bdde8a59f2541 267 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 9 261 2.8E-75 T 23-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 Gene3D G3DSA:3.30.70.240 600 685 2.7E-25 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 SUPERFAMILY SSF54980 402 480 2.05E-21 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 SUPERFAMILY SSF50447 262 404 2.4E-28 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 Gene3D G3DSA:3.30.70.870 405 480 8.7E-27 T 23-04-2016 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 SUPERFAMILY SSF54211 479 599 2.0E-43 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 Pfam PF03764 Elongation factor G, domain IV 479 597 5.1E-44 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 Gene3D G3DSA:2.40.30.10 306 404 8.6E-29 T 23-04-2016 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 Pfam PF00679 Elongation factor G C-terminus 600 684 1.7E-24 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 SMART SM00889 480 598 3.1E-69 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 PANTHER PTHR23115 1 176 4.3E-260 T 23-04-2016 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 PANTHER PTHR23115 303 691 4.3E-260 T 23-04-2016 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 PANTHER PTHR23115 251 279 4.3E-260 T 23-04-2016 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 Pfam PF00009 Elongation factor Tu GTP binding domain 8 278 3.4E-34 T 23-04-2016 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 SMART SM00838 600 687 4.0E-35 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 PANTHER PTHR23115:SF98 1 176 4.3E-260 T 23-04-2016 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 PANTHER PTHR23115:SF98 303 691 4.3E-260 T 23-04-2016 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 PANTHER PTHR23115:SF98 251 279 4.3E-260 T 23-04-2016 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 Pfam PF03144 Elongation factor Tu domain 2 324 391 2.3E-7 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 SUPERFAMILY SSF52540 7 278 3.2E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 Gene3D G3DSA:3.40.50.300 6 281 1.6E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 SUPERFAMILY SSF54980 603 698 5.76E-24 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 Gene3D G3DSA:3.30.230.10 484 599 8.8E-51 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 156 2.3E-12 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS11765 8a413c542504cafb9d9c1fd6fbf3feed 701 Pfam PF14492 Elongation Factor G, domain II 404 477 1.7E-27 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 37 774 1.5E-171 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 Pfam PF07244 Surface antigen variable number repeat 36 107 7.7E-8 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 Pfam PF07244 Surface antigen variable number repeat 371 442 1.0E-9 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 Pfam PF07244 Surface antigen variable number repeat 290 367 2.7E-15 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 Pfam PF07244 Surface antigen variable number repeat 190 286 1.9E-6 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 Pfam PF07244 Surface antigen variable number repeat 110 185 5.3E-10 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 PANTHER PTHR12815:SF11 17 774 7.4E-157 T 23-04-2016 NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 PIRSF PIRSF006076 3 774 2.4E-180 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 Gene3D G3DSA:2.40.160.50 572 771 4.6E-13 T 23-04-2016 NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 Pfam PF01103 Surface antigen 469 774 1.1E-45 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 NIDE_RS13945 39aed9a34719eeca49d539849b9fec71 774 PANTHER PTHR12815 17 774 7.4E-157 T 23-04-2016 NIDE_RS05615 3324de6a5c5f45906f9d16fd6d2075b7 452 Pfam PF01593 Flavin containing amine oxidoreductase 4 444 2.0E-44 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 NIDE_RS05615 3324de6a5c5f45906f9d16fd6d2075b7 452 PANTHER PTHR10742 6 447 1.3E-81 T 23-04-2016 NIDE_RS05615 3324de6a5c5f45906f9d16fd6d2075b7 452 Gene3D G3DSA:1.10.3110.10 85 181 7.9E-31 T 23-04-2016 NIDE_RS05615 3324de6a5c5f45906f9d16fd6d2075b7 452 SUPERFAMILY SSF51905 412 444 5.96E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05615 3324de6a5c5f45906f9d16fd6d2075b7 452 SUPERFAMILY SSF51905 4 303 5.96E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05615 3324de6a5c5f45906f9d16fd6d2075b7 452 Gene3D G3DSA:3.90.660.20 227 395 3.1E-43 T 23-04-2016 IPR027418 Protoporphyrinogen oxidase, C-terminal domain KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|UniPathway: UPA00251 NIDE_RS05615 3324de6a5c5f45906f9d16fd6d2075b7 452 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 5 448 1.6E-82 T 23-04-2016 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|UniPathway: UPA00251 NIDE_RS05615 3324de6a5c5f45906f9d16fd6d2075b7 452 SUPERFAMILY SSF54373 287 395 7.26E-30 T 23-04-2016 NIDE_RS05615 3324de6a5c5f45906f9d16fd6d2075b7 452 PANTHER PTHR10742:SF294 6 447 1.3E-81 T 23-04-2016 NIDE_RS13705 3ad89a31068f77fc0b85e130df437f4f 402 Pfam PF01757 Acyltransferase family 46 380 1.7E-15 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 NIDE_RS08840 4e04993a79ffa3a8900e3de37509a3ec 149 PANTHER PTHR10371 3 149 5.6E-36 T 23-04-2016 NIDE_RS08840 4e04993a79ffa3a8900e3de37509a3ec 149 PIRSF PIRSF000216 1 149 6.5E-40 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 NIDE_RS08840 4e04993a79ffa3a8900e3de37509a3ec 149 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 5 149 1.1E-37 T 23-04-2016 NIDE_RS08840 4e04993a79ffa3a8900e3de37509a3ec 149 Gene3D G3DSA:3.40.30.10 69 147 4.3E-8 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS08840 4e04993a79ffa3a8900e3de37509a3ec 149 SUPERFAMILY SSF52833 2 148 1.68E-38 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS10830 7a337a7b2b7f17dd810efe394931354a 123 Pfam PF00072 Response regulator receiver domain 5 117 1.7E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10830 7a337a7b2b7f17dd810efe394931354a 123 Gene3D G3DSA:3.40.50.2300 3 121 6.5E-40 T 23-04-2016 NIDE_RS10830 7a337a7b2b7f17dd810efe394931354a 123 SUPERFAMILY SSF52172 3 121 3.42E-38 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10830 7a337a7b2b7f17dd810efe394931354a 123 PANTHER PTHR26402 3 121 1.9E-43 T 23-04-2016 NIDE_RS10830 7a337a7b2b7f17dd810efe394931354a 123 SMART SM00448 3 117 7.4E-42 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Gene3D G3DSA:3.30.450.20 383 521 1.5E-33 T 23-04-2016 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Gene3D G3DSA:3.30.450.20 762 914 1.9E-32 T 23-04-2016 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SUPERFAMILY SSF55785 257 389 1.22E-22 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Gene3D G3DSA:3.30.450.20 139 258 1.9E-30 T 23-04-2016 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00091 403 472 4.6E-5 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00091 783 859 0.035 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00091 272 339 9.8E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00091 531 597 1.2E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00091 657 724 0.071 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00091 144 210 4.8E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00091 921 989 1.1 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Gene3D G3DSA:3.30.450.20 643 761 2.6E-18 T 23-04-2016 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Gene3D G3DSA:3.30.450.20 522 642 2.2E-30 T 23-04-2016 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 919 1032 9.2E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 816 916 3.0E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 654 775 1.3E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 528 651 1.2E-26 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 275 397 9.4E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 399 526 1.1E-17 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 265 7.2E-31 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Pfam PF13426 PAS domain 155 259 4.7E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Pfam PF13426 PAS domain 283 390 9.8E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00086 350 391 0.067 T 23-04-2016 IPR001610 PAC motif NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00086 604 645 2.8E-4 T 23-04-2016 IPR001610 PAC motif NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00086 220 260 0.011 T 23-04-2016 IPR001610 PAC motif NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00086 866 909 0.011 T 23-04-2016 IPR001610 PAC motif NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00086 995 1037 45.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00086 477 519 3.3E-10 T 23-04-2016 IPR001610 PAC motif NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00086 729 771 11.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SUPERFAMILY SSF55785 388 517 4.49E-26 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SUPERFAMILY SSF55785 133 258 3.32E-28 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SMART SM00448 8 119 1.7E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SUPERFAMILY SSF55785 642 769 1.92E-18 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Gene3D G3DSA:3.30.450.20 915 1031 1.7E-20 T 23-04-2016 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Pfam PF08448 PAS fold 663 772 2.3E-13 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SUPERFAMILY SSF55785 812 912 8.7E-19 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SUPERFAMILY SSF52172 7 152 1.2E-35 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Gene3D G3DSA:3.40.50.2300 8 138 9.3E-34 T 23-04-2016 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Gene3D G3DSA:3.30.450.20 271 382 1.1E-23 T 23-04-2016 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 PANTHER PTHR24423 373 643 5.0E-46 T 23-04-2016 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 PANTHER PTHR24423 908 927 5.0E-46 T 23-04-2016 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Pfam PF08447 PAS fold 427 513 5.5E-24 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Pfam PF08447 PAS fold 944 1031 1.2E-13 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Pfam PF08447 PAS fold 560 635 1.2E-14 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Pfam PF08447 PAS fold 814 901 1.2E-24 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 Pfam PF00072 Response regulator receiver domain 10 119 1.1E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SUPERFAMILY SSF55785 906 1031 1.14E-19 T 23-04-2016 IPR000014 PAS domain NIDE_RS02520 e8bc0d5e94528efbbe5bd60693d68416 1040 SUPERFAMILY SSF55785 516 643 5.86E-29 T 23-04-2016 IPR000014 PAS domain NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 PANTHER PTHR24220:SF425 331 540 2.9E-83 T 23-04-2016 NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 SMART SM00382 360 543 1.1E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 Gene3D G3DSA:3.40.50.300 329 542 1.7E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 Pfam PF00005 ABC transporter 353 488 1.4E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 Pfam PF00664 ABC transporter transmembrane region 19 203 5.9E-9 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 SUPERFAMILY SSF90123 8 303 1.15E-30 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 SUPERFAMILY SSF52540 323 544 4.02E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 ProSitePatterns PS00211 ABC transporters family signature. 461 475 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 PANTHER PTHR24220 331 540 2.9E-83 T 23-04-2016 NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 Gene3D G3DSA:1.20.1560.10 8 306 2.8E-24 T 23-04-2016 NIDE_RS08000 2cb67ce783a5b5cd83ec5de628c066e7 565 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 6 540 1.2E-138 T 23-04-2016 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015197|GO:0015833|GO:0016021 NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 8 201 8.3E-10 T 23-04-2016 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 SUPERFAMILY SSF52540 447 476 1.13E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 SUPERFAMILY SSF52540 214 417 1.13E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 PANTHER PTHR30195 35 418 1.2E-87 T 23-04-2016 NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 PANTHER PTHR30195 448 757 1.2E-87 T 23-04-2016 NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 SUPERFAMILY SSF52540 616 719 1.03E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 SUPERFAMILY SSF52540 293 355 1.03E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 SMART SM00487 263 499 8.4E-7 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 Gene3D G3DSA:3.40.50.300 264 473 1.0E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 Pfam PF04851 Type III restriction enzyme, res subunit 267 470 3.4E-14 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 PANTHER PTHR30195:SF13 35 418 1.2E-87 T 23-04-2016 NIDE_RS11490 9111e03aaa081acd2ee5a7e76b8c1c89 977 PANTHER PTHR30195:SF13 448 757 1.2E-87 T 23-04-2016 NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 578 592 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 PANTHER PTHR30258:SF2 197 768 2.1E-169 T 23-04-2016 NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 SUPERFAMILY SSF55781 25 182 1.37E-20 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 Gene3D G3DSA:3.40.50.300 488 768 1.6E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 229 331 6.4E-12 T 23-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 SMART SM00065 35 192 1.7E-5 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 SUPERFAMILY SSF52540 371 766 1.63E-85 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 Gene3D G3DSA:3.30.450.40 23 181 1.9E-28 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 Pfam PF00437 Type II/IV secretion system protein 382 650 2.7E-69 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 Gene3D G3DSA:3.30.450.90 353 483 9.0E-44 T 23-04-2016 NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 SUPERFAMILY SSF160246 197 327 1.54E-18 T 23-04-2016 NIDE_RS06965 80f40e21ae655ca4549b20d197a214a1 770 PANTHER PTHR30258 197 768 2.1E-169 T 23-04-2016 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 SMART SM00448 4 117 4.8E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 187 1.1E-15 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 171 1.1E-15 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 187 199 1.1E-15 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 PANTHER PTHR26402:SF151 4 220 1.4E-92 T 23-04-2016 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 SMART SM00421 154 211 8.7E-27 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 Pfam PF00072 Response regulator receiver domain 6 118 8.3E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 Gene3D G3DSA:3.40.50.2300 1 161 1.5E-43 T 23-04-2016 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 211 5.5E-23 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 SUPERFAMILY SSF46894 152 218 2.04E-23 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 Gene3D G3DSA:1.10.10.10 162 217 2.2E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 PANTHER PTHR26402 4 220 1.4E-92 T 23-04-2016 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 ProSitePatterns PS00622 LuxR-type HTH domain signature. 171 198 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS00760 1ff168b09c6b0b7b6fda72c33bac9063 223 SUPERFAMILY SSF52172 3 134 9.96E-36 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS02685 ac0c3f26e91b010962b587117dd031b0 1320 SUPERFAMILY SSF55729 1175 1307 1.49E-10 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS02685 ac0c3f26e91b010962b587117dd031b0 1320 Gene3D G3DSA:3.40.630.30 1217 1310 1.1E-10 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS02685 ac0c3f26e91b010962b587117dd031b0 1320 Pfam PF00583 Acetyltransferase (GNAT) family 1242 1304 8.4E-5 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS02685 ac0c3f26e91b010962b587117dd031b0 1320 Gene3D G3DSA:3.40.1090.10 706 988 1.5E-52 T 23-04-2016 NIDE_RS02685 ac0c3f26e91b010962b587117dd031b0 1320 Gene3D G3DSA:3.40.1090.10 56 133 1.5E-52 T 23-04-2016 NIDE_RS02685 ac0c3f26e91b010962b587117dd031b0 1320 Gene3D G3DSA:3.40.1090.10 647 648 1.5E-52 T 23-04-2016 NIDE_RS02685 ac0c3f26e91b010962b587117dd031b0 1320 Gene3D G3DSA:3.40.1090.10 534 572 1.5E-52 T 23-04-2016 NIDE_RS02685 ac0c3f26e91b010962b587117dd031b0 1320 Pfam PF01734 Patatin-like phospholipase 59 107 3.2E-8 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 NIDE_RS02685 ac0c3f26e91b010962b587117dd031b0 1320 SUPERFAMILY SSF52151 631 988 1.74E-32 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS02685 ac0c3f26e91b010962b587117dd031b0 1320 SUPERFAMILY SSF52151 50 109 1.74E-32 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 346 365 - T 23-04-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 PANTHER PTHR11455 4 473 4.9E-177 T 23-04-2016 NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 Gene3D G3DSA:3.40.50.620 3 142 1.7E-45 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 PRINTS PR00147 DNA photolyase signature 139 155 6.6E-24 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 PRINTS PR00147 DNA photolyase signature 385 399 6.6E-24 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 PRINTS PR00147 DNA photolyase signature 346 364 6.6E-24 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 PRINTS PR00147 DNA photolyase signature 326 342 6.6E-24 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 SUPERFAMILY SSF48173 196 476 5.36E-107 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 Pfam PF00875 DNA photolyase 4 161 4.3E-43 T 23-04-2016 IPR006050 DNA photolyase, N-terminal NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 Pfam PF03441 FAD binding domain of DNA photolyase 273 473 1.0E-76 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 326 338 - T 23-04-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 PANTHER PTHR11455:SF18 4 473 4.9E-177 T 23-04-2016 NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 Gene3D G3DSA:1.25.40.80 143 282 7.3E-34 T 23-04-2016 NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 SUPERFAMILY SSF52425 3 174 9.16E-51 T 23-04-2016 IPR006050 DNA photolyase, N-terminal NIDE_RS00920 c5f407921d75e3f913eda0f5ff9c84a2 481 Gene3D G3DSA:1.10.579.10 283 473 1.3E-75 T 23-04-2016 NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 PANTHER PTHR11700 5 103 2.1E-47 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 4 103 26.73 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 Gene3D G3DSA:3.30.70.600 5 103 4.2E-42 T 23-04-2016 IPR027486 Ribosomal protein S10 domain NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 5 102 1.7E-44 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 SMART SM01403 8 102 1.5E-53 T 23-04-2016 IPR027486 Ribosomal protein S10 domain NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 SUPERFAMILY SSF54999 6 103 7.32E-37 T 23-04-2016 IPR027486 Ribosomal protein S10 domain NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 PRINTS PR00971 Ribosomal protein S10 family signature 41 56 2.4E-17 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 PRINTS PR00971 Ribosomal protein S10 family signature 6 19 2.4E-17 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 PRINTS PR00971 Ribosomal protein S10 family signature 62 76 2.4E-17 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 30 45 - T 23-04-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06065 2d037328362640cf146d2e79900027b3 103 Pfam PF00338 Ribosomal protein S10p/S20e 8 102 8.1E-35 T 23-04-2016 IPR027486 Ribosomal protein S10 domain NIDE_RS11365 1210021d22aa78bb9b6375cad141e724 295 SUPERFAMILY SSF52540 25 269 7.99E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11365 1210021d22aa78bb9b6375cad141e724 295 ProSitePatterns PS01215 Mrp family signature. 129 145 - T 23-04-2016 IPR000808 Mrp, conserved site GO:0005524 NIDE_RS11365 1210021d22aa78bb9b6375cad141e724 295 Gene3D G3DSA:3.40.50.300 16 264 1.6E-110 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11365 1210021d22aa78bb9b6375cad141e724 295 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 24 265 3.1E-106 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein NIDE_RS11365 1210021d22aa78bb9b6375cad141e724 295 Hamap MF_02040 Iron-sulfur cluster carrier protein. 19 266 39.364 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein NIDE_RS11365 1210021d22aa78bb9b6375cad141e724 295 PANTHER PTHR23264 21 269 2.9E-149 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein NIDE_RS17805 8277628bc2be1ce1ffcc874d15229a27 275 PANTHER PTHR24220:SF483 20 259 1.1E-110 T 23-04-2016 NIDE_RS17805 8277628bc2be1ce1ffcc874d15229a27 275 SMART SM00382 43 233 8.5E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS17805 8277628bc2be1ce1ffcc874d15229a27 275 Pfam PF00005 ABC transporter 35 184 3.4E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS17805 8277628bc2be1ce1ffcc874d15229a27 275 SUPERFAMILY SSF52540 17 250 2.34E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17805 8277628bc2be1ce1ffcc874d15229a27 275 Gene3D G3DSA:3.40.50.300 17 247 4.7E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17805 8277628bc2be1ce1ffcc874d15229a27 275 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS17805 8277628bc2be1ce1ffcc874d15229a27 275 PANTHER PTHR24220 20 259 1.1E-110 T 23-04-2016 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Gene3D G3DSA:3.30.565.10 901 997 2.7E-11 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Gene3D G3DSA:3.30.565.10 840 862 2.7E-11 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 907 996 1.6E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00091 651 717 3.3E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00091 139 209 3.8E-4 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00091 526 592 4.6E-9 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00091 272 338 7.1E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00091 398 464 1.4E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00387 903 997 4.6E-10 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Gene3D G3DSA:3.30.450.20 258 383 1.5E-26 T 23-04-2016 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Gene3D G3DSA:3.30.450.20 512 636 1.6E-27 T 23-04-2016 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SUPERFAMILY SSF55785 636 768 6.11E-23 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00086 729 770 0.075 T 23-04-2016 IPR001610 PAC motif NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00086 217 260 37.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00086 474 514 0.0018 T 23-04-2016 IPR001610 PAC motif NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00086 345 386 0.004 T 23-04-2016 IPR001610 PAC motif NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SUPERFAMILY SSF55785 126 258 1.38E-18 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SUPERFAMILY SSF55785 257 384 2.99E-27 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Pfam PF07730 Histidine kinase 798 864 1.8E-14 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SUPERFAMILY SSF55874 867 995 2.23E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Pfam PF00989 PAS fold 272 383 3.2E-9 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SMART SM00448 6 120 3.9E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Pfam PF08448 PAS fold 533 641 1.7E-20 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Pfam PF08448 PAS fold 146 262 9.8E-8 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Pfam PF13426 PAS domain 409 513 1.7E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Pfam PF13426 PAS domain 662 769 1.5E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 PANTHER PTHR24423 729 998 2.4E-59 T 23-04-2016 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 PANTHER PTHR24423 249 469 2.4E-59 T 23-04-2016 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Gene3D G3DSA:3.30.450.20 132 257 6.0E-19 T 23-04-2016 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Gene3D G3DSA:3.30.450.20 384 511 1.8E-30 T 23-04-2016 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Gene3D G3DSA:3.30.450.20 637 768 8.6E-22 T 23-04-2016 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Gene3D G3DSA:3.40.50.2300 5 131 1.2E-26 T 23-04-2016 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 Pfam PF00072 Response regulator receiver domain 8 118 1.6E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SUPERFAMILY SSF55785 511 637 1.82E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SUPERFAMILY SSF55785 383 512 3.77E-29 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 656 777 9.2E-16 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 268 392 3.9E-23 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 137 267 9.0E-9 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 395 521 2.2E-30 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 522 645 1.0E-18 T 23-04-2016 IPR000014 PAS domain NIDE_RS20415 1742f82f8eae7bd4478ae48ff65963a5 998 SUPERFAMILY SSF52172 5 144 2.85E-26 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS07180 e8a6d1c1f40d7584fd99832ade17d858 297 Pfam PF04280 Tim44-like domain 168 295 3.9E-21 T 23-04-2016 IPR007379 Tim44-like domain NIDE_RS07180 e8a6d1c1f40d7584fd99832ade17d858 297 SUPERFAMILY SSF54427 165 296 5.09E-19 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS07180 e8a6d1c1f40d7584fd99832ade17d858 297 SMART SM00978 149 295 3.7E-20 T 23-04-2016 IPR007379 Tim44-like domain NIDE_RS07180 e8a6d1c1f40d7584fd99832ade17d858 297 PANTHER PTHR41542 168 296 7.2E-18 T 23-04-2016 NIDE_RS07180 e8a6d1c1f40d7584fd99832ade17d858 297 PANTHER PTHR41542:SF1 168 296 7.2E-18 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 Gene3D G3DSA:3.40.1130.10 413 542 1.2E-12 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 Gene3D G3DSA:1.20.1250.20 220 400 6.6E-11 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 Pfam PF00501 AMP-binding enzyme 620 1021 1.5E-77 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 Gene3D G3DSA:3.30.300.30 1026 1127 1.9E-10 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 ProSitePatterns PS00455 Putative AMP-binding domain signature. 775 786 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 Gene3D G3DSA:3.40.50.980 606 781 5.8E-21 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 SUPERFAMILY SSF56801 603 1125 1.31E-110 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 PANTHER PTHR24096:SF211 524 1127 5.5E-191 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 Pfam PF01553 Acyltransferase 416 541 1.1E-20 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 SUPERFAMILY SSF103473 41 400 8.37E-33 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 PANTHER PTHR24096 524 1127 5.5E-191 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 Gene3D G3DSA:3.40.50.980 782 930 4.6E-40 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 SUPERFAMILY SSF69593 392 592 2.75E-29 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 Pfam PF07690 Major Facilitator Superfamily 25 361 3.3E-24 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 Gene3D G3DSA:1.20.1250.20 38 198 3.9E-12 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 Gene3D G3DSA:2.30.38.10 944 1018 1.7E-27 T 23-04-2016 NIDE_RS05470 77f23551405dd85e946d47f689247f62 1132 SMART SM00563 430 545 1.1E-24 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 NIDE_RS19630 ff371c9337ffef16be44d8cd4c69a9e1 133 PANTHER PTHR31793:SF9 1 126 8.1E-38 T 23-04-2016 NIDE_RS19630 ff371c9337ffef16be44d8cd4c69a9e1 133 PANTHER PTHR31793 1 126 8.1E-38 T 23-04-2016 NIDE_RS19630 ff371c9337ffef16be44d8cd4c69a9e1 133 SUPERFAMILY SSF54637 1 126 6.71E-35 T 23-04-2016 IPR029069 HotDog domain NIDE_RS19630 ff371c9337ffef16be44d8cd4c69a9e1 133 PIRSF PIRSF003230 1 128 2.8E-37 T 23-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 NIDE_RS19630 ff371c9337ffef16be44d8cd4c69a9e1 133 Pfam PF03061 Thioesterase superfamily 13 90 5.8E-14 T 23-04-2016 IPR006683 Thioesterase domain NIDE_RS19630 ff371c9337ffef16be44d8cd4c69a9e1 133 Gene3D G3DSA:3.10.129.10 1 126 9.3E-43 T 23-04-2016 IPR029069 HotDog domain NIDE_RS19630 ff371c9337ffef16be44d8cd4c69a9e1 133 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 3 114 4.9E-28 T 23-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 NIDE_RS01150 66af3c68562574b7dd7929e4e4deca7b 492 Pfam PF13520 Amino acid permease 41 451 1.0E-51 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 NIDE_RS01150 66af3c68562574b7dd7929e4e4deca7b 492 PANTHER PTHR11785:SF328 1 490 1.4E-163 T 23-04-2016 NIDE_RS01150 66af3c68562574b7dd7929e4e4deca7b 492 PIRSF PIRSF006060 20 490 1.2E-89 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 NIDE_RS01150 66af3c68562574b7dd7929e4e4deca7b 492 PANTHER PTHR11785 1 490 1.4E-163 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 NIDE_RS15900 438c9d62751430db5fed25867dded3bb 398 PANTHER PTHR30158 1 398 1.9E-114 T 23-04-2016 NIDE_RS15900 438c9d62751430db5fed25867dded3bb 398 Gene3D G3DSA:2.40.50.100 67 99 1.5E-21 T 23-04-2016 NIDE_RS15900 438c9d62751430db5fed25867dded3bb 398 Gene3D G3DSA:2.40.50.100 174 207 1.5E-21 T 23-04-2016 NIDE_RS15900 438c9d62751430db5fed25867dded3bb 398 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 375 2.1E-76 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS15900 438c9d62751430db5fed25867dded3bb 398 Pfam PF13533 Biotin-lipoyl like 66 114 8.8E-10 T 23-04-2016 NIDE_RS15900 438c9d62751430db5fed25867dded3bb 398 SUPERFAMILY SSF111369 56 298 1.24E-61 T 23-04-2016 NIDE_RS15900 438c9d62751430db5fed25867dded3bb 398 PANTHER PTHR30158:SF3 1 398 1.9E-114 T 23-04-2016 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 SUPERFAMILY SSF52172 7 145 7.4E-14 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 PANTHER PTHR10108 1249 1315 2.3E-16 T 23-04-2016 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 PANTHER PTHR10108 1143 1232 2.3E-16 T 23-04-2016 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Gene3D G3DSA:3.30.450.20 133 258 5.5E-17 T 23-04-2016 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Pfam PF08241 Methyltransferase domain 1180 1306 2.0E-13 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Pfam PF00072 Response regulator receiver domain 10 112 8.5E-10 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 SUPERFAMILY SSF141371 685 822 2.94E-5 T 23-04-2016 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 SUPERFAMILY SSF53335 1158 1319 7.3E-21 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 SUPERFAMILY SSF53474 836 984 5.43E-13 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Pfam PF07238 PilZ domain 688 812 4.9E-8 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 SUPERFAMILY SSF55785 129 258 3.38E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Gene3D G3DSA:3.30.565.10 348 414 2.1E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 SUPERFAMILY SSF141371 544 587 2.35E-6 T 23-04-2016 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 SUPERFAMILY SSF55874 355 509 7.53E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Gene3D G3DSA:3.40.50.1820 831 1035 1.4E-23 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Gene3D G3DSA:3.40.50.150 1155 1313 3.2E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 SMART SM00091 141 207 2.7E-9 T 23-04-2016 IPR000014 PAS domain NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Pfam PF12146 Serine aminopeptidase, S33 863 972 7.1E-9 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Gene3D G3DSA:3.30.565.10 480 511 8.1E-4 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Gene3D G3DSA:3.40.50.2300 8 132 1.3E-12 T 23-04-2016 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 PANTHER PTHR10108:SF779 1249 1315 2.3E-16 T 23-04-2016 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 PANTHER PTHR10108:SF779 1143 1232 2.3E-16 T 23-04-2016 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 Pfam PF00989 PAS fold 144 257 7.5E-10 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS07315 2e1470c248b7da51d0bd3789a7721771 1396 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 142 267 7.6E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 220 234 - T 23-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PANTHER PTHR20854 7 268 9.6E-98 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 Pfam PF00459 Inositol monophosphatase family 15 269 1.3E-63 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 Gene3D G3DSA:3.30.540.10 15 158 6.0E-48 T 23-04-2016 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 90 103 - T 23-04-2016 IPR020583 Inositol monophosphatase, metal-binding site NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 SUPERFAMILY SSF56655 15 269 4.32E-81 T 23-04-2016 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PRINTS PR01959 SuhB family inositol monophosphatase signature 165 191 8.5E-9 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PRINTS PR01959 SuhB family inositol monophosphatase signature 113 132 8.5E-9 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PRINTS PR01959 SuhB family inositol monophosphatase signature 207 219 8.5E-9 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 69 85 2.0E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 217 241 2.0E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 186 207 2.0E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 47 67 2.0E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 139 162 2.0E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 90 106 2.0E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 PANTHER PTHR20854:SF4 7 268 9.6E-98 T 23-04-2016 NIDE_RS00745 6be30a410b83c67b1de23276677814bd 273 Gene3D G3DSA:3.40.190.80 159 269 4.4E-37 T 23-04-2016 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 SMART SM00387 666 773 1.6E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 SUPERFAMILY SSF55781 368 516 1.79E-14 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 SUPERFAMILY SSF47384 542 614 2.16E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 PANTHER PTHR24423:SF544 511 526 2.4E-95 T 23-04-2016 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 Pfam PF00672 HAMP domain 280 347 8.9E-13 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 Gene3D G3DSA:3.40.50.2300 791 904 1.3E-25 T 23-04-2016 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 PANTHER PTHR24423:SF544 32 40 2.4E-95 T 23-04-2016 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 Pfam PF00512 His Kinase A (phospho-acceptor) domain 548 613 2.5E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 SUPERFAMILY SSF158472 301 348 3.92E-7 T 23-04-2016 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 Pfam PF00072 Response regulator receiver domain 793 901 5.5E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 PANTHER PTHR24423 543 901 2.4E-95 T 23-04-2016 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 SMART SM00065 368 514 0.0028 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 SUPERFAMILY SSF52172 791 905 8.11E-24 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 Gene3D G3DSA:1.10.287.130 542 612 5.9E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 SUPERFAMILY SSF55874 624 771 2.88E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 PANTHER PTHR24423:SF544 543 901 2.4E-95 T 23-04-2016 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 PANTHER PTHR24423 32 40 2.4E-95 T 23-04-2016 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 Gene3D G3DSA:3.30.565.10 624 771 6.8E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 Pfam PF13185 GAF domain 367 503 4.9E-7 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 PANTHER PTHR24423 511 526 2.4E-95 T 23-04-2016 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 PRINTS PR00344 Bacterial sensor protein C-terminal signature 757 770 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 PRINTS PR00344 Bacterial sensor protein C-terminal signature 733 751 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 PRINTS PR00344 Bacterial sensor protein C-terminal signature 721 731 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 PRINTS PR00344 Bacterial sensor protein C-terminal signature 703 717 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 SMART SM00448 791 901 1.8E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 SMART SM00388 548 617 8.5E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 666 771 1.5E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 Gene3D G3DSA:3.30.450.40 346 519 5.2E-17 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20220 d31ed6ea6eca4ab915b43644547c06cd 922 SMART SM00304 299 351 2.7E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 SUPERFAMILY SSF55681 151 490 1.59E-119 T 23-04-2016 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 Gene3D G3DSA:3.30.930.10 146 488 3.5E-123 T 23-04-2016 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 10 492 43.723 T 23-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 PANTHER PTHR22594:SF4 3 493 6.7E-259 T 23-04-2016 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 PRINTS PR00982 Lysyl-tRNA synthetase signature 251 268 1.7E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 PRINTS PR00982 Lysyl-tRNA synthetase signature 204 220 1.7E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 PRINTS PR00982 Lysyl-tRNA synthetase signature 374 390 1.7E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 PRINTS PR00982 Lysyl-tRNA synthetase signature 188 198 1.7E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 PRINTS PR00982 Lysyl-tRNA synthetase signature 233 246 1.7E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 Gene3D G3DSA:2.40.50.140 5 144 6.6E-40 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 3 493 1.8E-202 T 23-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 SUPERFAMILY SSF50249 3 144 9.43E-37 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 Pfam PF01336 OB-fold nucleic acid binding domain 59 133 1.6E-14 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 Pfam PF00152 tRNA synthetases class II (D, K and N) 152 489 1.3E-80 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS09385 a44f88641d43b41ceb135502857536cb 493 PANTHER PTHR22594 3 493 6.7E-259 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 Gene3D G3DSA:3.40.50.261 243 387 6.5E-66 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 Gene3D G3DSA:3.30.470.20 96 242 1.2E-52 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 PANTHER PTHR11815 1 392 8.6E-210 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 389 41.054 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 PIRSF PIRSF001554 1 391 3.6E-147 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 387 3.0E-155 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 Gene3D G3DSA:3.30.1490.20 22 95 2.2E-30 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 SUPERFAMILY SSF52210 242 387 6.02E-54 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 Pfam PF08442 ATP-grasp domain 2 205 5.2E-74 T 23-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 Pfam PF00549 CoA-ligase 265 384 3.0E-26 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03865 29f90489db01cfa12b26153e2e4f125b 392 SUPERFAMILY SSF56059 1 241 1.86E-72 T 23-04-2016 NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 Gene3D G3DSA:2.60.40.420 11 131 1.7E-30 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 SUPERFAMILY SSF49503 141 285 2.41E-36 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 PANTHER PTHR11709:SF84 13 229 1.7E-22 T 23-04-2016 NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 SUPERFAMILY SSF49503 11 154 1.56E-34 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 PRINTS PR00695 Copper containing nitrite reductase signature 101 116 7.8E-21 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 PRINTS PR00695 Copper containing nitrite reductase signature 118 134 7.8E-21 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 PRINTS PR00695 Copper containing nitrite reductase signature 42 58 7.8E-21 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 PRINTS PR00695 Copper containing nitrite reductase signature 15 33 7.8E-21 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 PRINTS PR00695 Copper containing nitrite reductase signature 60 77 7.8E-21 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 Pfam PF07732 Multicopper oxidase 34 137 7.2E-14 T 23-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 PANTHER PTHR11709 13 229 1.7E-22 T 23-04-2016 NIDE_RS11620 557056bf6c0ed48494152c87e4bdbdf4 301 Gene3D G3DSA:2.60.40.420 132 269 1.9E-30 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS13885 fe603af699f0785fbc7e2983f5f4300e 360 PANTHER PTHR30160:SF7 3 340 6.0E-67 T 23-04-2016 NIDE_RS13885 fe603af699f0785fbc7e2983f5f4300e 360 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 76 328 1.5E-39 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 NIDE_RS13885 fe603af699f0785fbc7e2983f5f4300e 360 SUPERFAMILY SSF53756 7 348 7.38E-91 T 23-04-2016 NIDE_RS13885 fe603af699f0785fbc7e2983f5f4300e 360 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 8 344 3.1E-61 T 23-04-2016 IPR011910 Lipopolysaccharide heptosyltransferase II GO:0009103|GO:0016757 KEGG: 00231+2.-.-.-|UniPathway: UPA00958 NIDE_RS13885 fe603af699f0785fbc7e2983f5f4300e 360 PANTHER PTHR30160 3 340 6.0E-67 T 23-04-2016 NIDE_RS13885 fe603af699f0785fbc7e2983f5f4300e 360 Gene3D G3DSA:3.40.50.2000 7 155 1.3E-46 T 23-04-2016 NIDE_RS13885 fe603af699f0785fbc7e2983f5f4300e 360 Gene3D G3DSA:3.40.50.2000 175 348 1.9E-49 T 23-04-2016 NIDE_RS12025 ebaaaf6e7b7cf38f5f89748ac5851795 360 PANTHER PTHR35810 3 349 1.1E-165 T 23-04-2016 NIDE_RS12025 ebaaaf6e7b7cf38f5f89748ac5851795 360 PIRSF PIRSF015268 3 347 1.6E-147 T 23-04-2016 IPR011204 Virulence protein RhuM-like NIDE_RS12025 ebaaaf6e7b7cf38f5f89748ac5851795 360 PANTHER PTHR35810:SF1 3 349 1.1E-165 T 23-04-2016 NIDE_RS12025 ebaaaf6e7b7cf38f5f89748ac5851795 360 Pfam PF13310 Virulence protein RhuM family 67 315 2.6E-115 T 23-04-2016 IPR011204 Virulence protein RhuM-like NIDE_RS03225 4a00f23026a36e7f9f74785e9d735e40 296 Pfam PF00348 Polyprenyl synthetase 31 260 5.2E-57 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 NIDE_RS03225 4a00f23026a36e7f9f74785e9d735e40 296 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 215 227 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 NIDE_RS03225 4a00f23026a36e7f9f74785e9d735e40 296 Gene3D G3DSA:1.10.600.10 2 295 2.4E-94 T 23-04-2016 IPR008949 Isoprenoid synthase domain NIDE_RS03225 4a00f23026a36e7f9f74785e9d735e40 296 SUPERFAMILY SSF48576 2 288 1.58E-83 T 23-04-2016 IPR008949 Isoprenoid synthase domain NIDE_RS03225 4a00f23026a36e7f9f74785e9d735e40 296 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 97 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 NIDE_RS03225 4a00f23026a36e7f9f74785e9d735e40 296 PANTHER PTHR12001 1 296 1.6E-105 T 23-04-2016 IPR017446 Polyprenyl synthetase-related NIDE_RS03225 4a00f23026a36e7f9f74785e9d735e40 296 PANTHER PTHR12001:SF23 1 296 1.6E-105 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Gene3D G3DSA:1.25.40.10 39 283 4.2E-41 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Gene3D G3DSA:1.25.40.10 284 491 1.1E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SUPERFAMILY SSF48452 39 209 2.91E-27 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 PANTHER PTHR23083 523 545 2.9E-65 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 PANTHER PTHR23083 580 791 2.9E-65 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 PANTHER PTHR23083 393 454 2.9E-65 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 PANTHER PTHR23083 31 219 2.9E-65 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SUPERFAMILY SSF48452 347 548 1.78E-22 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Pfam PF13174 Tetratricopeptide repeat 452 481 0.018 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Pfam PF14559 Tetratricopeptide repeat 529 591 2.1E-7 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Pfam PF14559 Tetratricopeptide repeat 150 213 2.2E-6 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SUPERFAMILY SSF48452 497 688 9.01E-31 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SUPERFAMILY SSF48452 726 785 9.01E-31 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 584 617 0.22 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 241 274 33.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 139 172 350.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 71 104 0.0012 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 414 447 0.38 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 652 685 0.94 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 173 206 0.12 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 723 756 120.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 757 790 22.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 37 70 22.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 380 413 340.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 275 308 450.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 618 651 300.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SMART SM00028 516 549 0.35 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Gene3D G3DSA:1.25.40.10 561 786 2.1E-36 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Pfam PF13432 Tetratricopeptide repeat 729 782 7.8E-4 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Pfam PF13432 Tetratricopeptide repeat 43 103 4.6E-7 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Pfam PF13432 Tetratricopeptide repeat 629 684 1.6E-7 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Pfam PF13432 Tetratricopeptide repeat 398 448 1.4E-5 T 23-04-2016 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Gene3D G3DSA:1.25.40.10 492 551 2.3E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 SUPERFAMILY SSF48452 170 336 1.02E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11020 d3484b4273eb721b6b9f72dcc3bf3eff 805 Pfam PF13428 Tetratricopeptide repeat 244 283 8.9E-6 T 23-04-2016 NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 Gene3D G3DSA:1.10.1520.10 7 151 6.8E-48 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 SMART SM00358 167 234 1.6E-23 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 Pfam PF14622 Ribonuclease-III-like 21 146 5.6E-38 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 SUPERFAMILY SSF69065 5 153 1.71E-47 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 ProSitePatterns PS00517 Ribonuclease III family signature. 46 54 - T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 11 233 2.2E-77 T 23-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 PANTHER PTHR11207 5 234 2.1E-80 T 23-04-2016 NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 SUPERFAMILY SSF54768 118 233 8.64E-28 T 23-04-2016 NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 Pfam PF00035 Double-stranded RNA binding motif 167 233 1.6E-17 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 Gene3D G3DSA:3.30.160.20 166 233 4.3E-28 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 SMART SM00535 22 157 3.9E-47 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 NIDE_RS03670 278c269507bc8d8a79bbc2d9c6c5da61 234 Hamap MF_00104 Ribonuclease 3 [rnc]. 10 230 32.206 T 23-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 SUPERFAMILY SSF55326 26 152 1.62E-30 T 23-04-2016 NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 Gene3D G3DSA:3.30.1330.10 14 154 1.0E-35 T 23-04-2016 IPR016188 PurM-like, N-terminal domain NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 Pfam PF00586 AIR synthase related protein, N-terminal domain 39 152 3.3E-20 T 23-04-2016 IPR016188 PurM-like, N-terminal domain NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 SUPERFAMILY SSF56042 157 321 2.69E-32 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 Pfam PF02769 AIR synthase related protein, C-terminal domain 164 322 4.9E-5 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 PIRSF PIRSF005303 8 345 2.7E-91 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 13 342 29.374 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 PANTHER PTHR30270 15 348 3.5E-104 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 PANTHER PTHR30270:SF0 15 348 3.5E-104 T 23-04-2016 NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 15 345 1.5E-93 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 NIDE_RS13960 e75e655121bbba353b01c3f0d17efe2c 349 Gene3D G3DSA:3.90.650.10 159 345 7.8E-45 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS08810 7ede07d57c08b27af88cdd65051288db 224 Pfam PF01738 Dienelactone hydrolase family 19 203 8.8E-7 T 23-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 NIDE_RS08810 7ede07d57c08b27af88cdd65051288db 224 SUPERFAMILY SSF53474 11 213 1.72E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS08810 7ede07d57c08b27af88cdd65051288db 224 Gene3D G3DSA:3.40.50.1820 6 212 6.7E-47 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS08650 07f6f47b46606963e5988c1523454c68 139 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 15 138 1.7E-52 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 NIDE_RS08650 07f6f47b46606963e5988c1523454c68 139 PANTHER PTHR10173 13 139 4.4E-52 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 NIDE_RS08650 07f6f47b46606963e5988c1523454c68 139 PANTHER PTHR10173:SF18 13 139 4.4E-52 T 23-04-2016 NIDE_RS08650 07f6f47b46606963e5988c1523454c68 139 Pfam PF01641 SelR domain 19 138 1.7E-49 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 NIDE_RS08650 07f6f47b46606963e5988c1523454c68 139 SUPERFAMILY SSF51316 14 138 1.57E-54 T 23-04-2016 IPR011057 Mss4-like NIDE_RS08650 07f6f47b46606963e5988c1523454c68 139 Gene3D G3DSA:2.170.150.20 12 138 2.4E-56 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 NIDE_RS18815 3970b17667769b50990d57d31c6fa96f 417 Gene3D G3DSA:3.30.830.10 221 407 1.9E-56 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS18815 3970b17667769b50990d57d31c6fa96f 417 Gene3D G3DSA:3.30.830.10 2 210 1.1E-53 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS18815 3970b17667769b50990d57d31c6fa96f 417 Pfam PF00675 Insulinase (Peptidase family M16) 13 158 2.6E-42 T 23-04-2016 IPR011765 Peptidase M16, N-terminal NIDE_RS18815 3970b17667769b50990d57d31c6fa96f 417 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 33 56 - T 23-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 NIDE_RS18815 3970b17667769b50990d57d31c6fa96f 417 PANTHER PTHR11851 2 408 4.5E-120 T 23-04-2016 NIDE_RS18815 3970b17667769b50990d57d31c6fa96f 417 SUPERFAMILY SSF63411 223 410 7.49E-49 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS18815 3970b17667769b50990d57d31c6fa96f 417 SUPERFAMILY SSF63411 2 205 1.31E-56 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS18815 3970b17667769b50990d57d31c6fa96f 417 Pfam PF05193 Peptidase M16 inactive domain 168 340 3.7E-40 T 23-04-2016 IPR007863 Peptidase M16, C-terminal NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 Pfam PF00488 MutS domain V 338 533 1.2E-17 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 Pfam PF01713 Smr domain 735 810 3.3E-15 T 23-04-2016 IPR002625 Smr domain NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 SUPERFAMILY SSF48334 72 292 3.14E-18 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 SUPERFAMILY SSF52540 298 534 2.06E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 SUPERFAMILY SSF160443 734 809 7.19E-7 T 23-04-2016 IPR002625 Smr domain NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 SMART SM00534 335 534 7.2E-36 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 Gene3D G3DSA:3.40.50.300 299 533 1.6E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 SMART SM00533 14 320 6.8E-7 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 PIRSF PIRSF005814 3 810 1.4E-192 T 23-04-2016 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 PANTHER PTHR11361:SF14 42 622 7.7E-169 T 23-04-2016 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 7 809 17.794 T 23-04-2016 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 PANTHER PTHR11361 42 622 7.7E-169 T 23-04-2016 NIDE_RS05115 6d397556d554314f418987e4acea4c0d 810 SMART SM00463 732 810 1.4E-10 T 23-04-2016 IPR002625 Smr domain NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Pfam PF06251 Capsule biosynthesis GfcC 739 830 4.2E-8 T 23-04-2016 IPR010425 Domain of unknown function DUF1017 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Gene3D G3DSA:3.30.1950.10 277 346 3.3E-10 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Gene3D G3DSA:3.10.560.10 347 431 2.0E-17 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Gene3D G3DSA:3.10.560.10 437 525 2.7E-10 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Gene3D G3DSA:3.10.560.10 767 843 4.6E-11 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Gene3D G3DSA:3.10.560.10 622 669 1.1E-10 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Gene3D G3DSA:3.10.560.10 738 766 1.1E-10 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Gene3D G3DSA:3.10.560.10 532 616 3.9E-11 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 PANTHER PTHR33619 731 818 7.4E-89 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 PANTHER PTHR33619 247 657 7.4E-89 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 SUPERFAMILY SSF142984 436 470 2.75E-5 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 PANTHER PTHR33619:SF1 731 818 7.4E-89 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 PANTHER PTHR33619:SF1 247 657 7.4E-89 T 23-04-2016 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Pfam PF02563 Polysaccharide biosynthesis/export protein 271 346 5.4E-11 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Pfam PF10531 SLBB domain 625 660 1.3E-5 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Pfam PF10531 SLBB domain 535 579 2.5E-5 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Pfam PF10531 SLBB domain 353 398 2.1E-7 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS04095 151568fd1fc0d97084bdf17fe6dabe09 877 Pfam PF10531 SLBB domain 436 481 2.6E-11 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS10540 2405d1664303e9df2e0c15a4b7a09e7e 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 182 204 7.686185E-24 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NIDE_RS10540 2405d1664303e9df2e0c15a4b7a09e7e 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 24 45 7.686185E-24 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NIDE_RS10540 2405d1664303e9df2e0c15a4b7a09e7e 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 204 223 7.686185E-24 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NIDE_RS10540 2405d1664303e9df2e0c15a4b7a09e7e 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 82 101 7.686185E-24 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NIDE_RS10540 2405d1664303e9df2e0c15a4b7a09e7e 263 Pfam PF01311 Bacterial export proteins, family 1 16 248 3.2E-61 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 NIDE_RS10540 2405d1664303e9df2e0c15a4b7a09e7e 263 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 17 254 4.1E-53 T 23-04-2016 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 NIDE_RS10540 2405d1664303e9df2e0c15a4b7a09e7e 263 PANTHER PTHR30065 4 263 5.4E-62 T 23-04-2016 NIDE_RS10540 2405d1664303e9df2e0c15a4b7a09e7e 263 PANTHER PTHR30065:SF1 4 263 5.4E-62 T 23-04-2016 NIDE_RS01960 5fb46d5f592029474df24bb7b05e6488 219 PANTHER PTHR21299 2 219 3.0E-53 T 23-04-2016 NIDE_RS01960 5fb46d5f592029474df24bb7b05e6488 219 SUPERFAMILY SSF52540 2 218 9.77E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01960 5fb46d5f592029474df24bb7b05e6488 219 TIGRFAM TIGR00017 cmk: cytidylate kinase 2 213 1.2E-63 T 23-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 NIDE_RS01960 5fb46d5f592029474df24bb7b05e6488 219 Pfam PF02224 Cytidylate kinase 3 215 1.4E-64 T 23-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 NIDE_RS01960 5fb46d5f592029474df24bb7b05e6488 219 Gene3D G3DSA:3.40.50.300 2 215 2.8E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01960 5fb46d5f592029474df24bb7b05e6488 219 Hamap MF_00238 Cytidylate kinase [cmk]. 1 219 31.425 T 23-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 NIDE_RS13125 dfdd5ee0d55c15e99b10d41cf16d0125 345 Pfam PF13480 Acetyltransferase (GNAT) domain 153 286 3.9E-15 T 23-04-2016 NIDE_RS13125 dfdd5ee0d55c15e99b10d41cf16d0125 345 Gene3D G3DSA:3.40.630.30 101 295 8.4E-35 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS13125 dfdd5ee0d55c15e99b10d41cf16d0125 345 SUPERFAMILY SSF55729 142 304 3.04E-37 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS13125 dfdd5ee0d55c15e99b10d41cf16d0125 345 SUPERFAMILY SSF55729 13 123 6.24E-5 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS13125 dfdd5ee0d55c15e99b10d41cf16d0125 345 TIGRFAM TIGR03019 pepcterm_femAB: FemAB-related protein, PEP-CTERM system-associated 15 345 6.5E-121 T 23-04-2016 IPR017469 PEP-CTERM system-associated, FemAB-related NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Pfam PF00072 Response regulator receiver domain 530 643 5.7E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Pfam PF00072 Response regulator receiver domain 688 803 2.7E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Gene3D G3DSA:3.30.565.10 349 509 5.7E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Pfam PF13188 PAS domain 150 198 0.0051 T 23-04-2016 IPR000014 PAS domain NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SUPERFAMILY SSF55874 337 506 7.33E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SMART SM00091 149 213 0.19 T 23-04-2016 IPR000014 PAS domain NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SMART SM00091 24 89 0.43 T 23-04-2016 IPR000014 PAS domain NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 509 6.8E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Gene3D G3DSA:3.30.450.20 139 193 3.2E-8 T 23-04-2016 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Pfam PF08448 PAS fold 30 76 2.4E-5 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SMART SM00387 395 511 6.3E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SUPERFAMILY SSF47384 268 349 9.61E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Gene3D G3DSA:3.30.450.20 26 83 7.6E-6 T 23-04-2016 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 PANTHER PTHR24423 116 524 4.6E-161 T 23-04-2016 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 PANTHER PTHR24423 685 809 4.6E-161 T 23-04-2016 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SMART SM00448 528 646 2.4E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SMART SM00448 686 806 9.9E-38 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 464 2.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 489 2.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 PRINTS PR00344 Bacterial sensor protein C-terminal signature 495 508 2.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 450 2.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Gene3D G3DSA:3.40.50.2300 526 651 8.2E-31 T 23-04-2016 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SUPERFAMILY SSF52172 685 811 2.42E-37 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SUPERFAMILY SSF47226 833 933 3.79E-22 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SUPERFAMILY SSF47226 789 802 3.79E-22 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SUPERFAMILY SSF55785 26 74 4.36E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Gene3D G3DSA:1.10.287.130 275 344 3.0E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Gene3D G3DSA:3.40.50.2300 684 810 4.6E-44 T 23-04-2016 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 348 3.8E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Pfam PF01627 Hpt domain 853 934 1.6E-11 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SMART SM00388 283 348 2.3E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SUPERFAMILY SSF55785 140 195 8.72E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 SUPERFAMILY SSF52172 526 652 2.42E-29 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10635 d68d1b0875337daaaa061ccf2d593de4 950 Gene3D G3DSA:1.20.120.160 829 939 2.2E-21 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS13260 35b39c7bec60f2ad5152cc97f6b8b1b2 207 Gene3D G3DSA:3.10.560.10 114 207 3.5E-18 T 23-04-2016 NIDE_RS13260 35b39c7bec60f2ad5152cc97f6b8b1b2 207 Pfam PF10531 SLBB domain 121 171 4.9E-12 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS13260 35b39c7bec60f2ad5152cc97f6b8b1b2 207 Gene3D G3DSA:3.30.1950.10 49 113 1.5E-18 T 23-04-2016 NIDE_RS13260 35b39c7bec60f2ad5152cc97f6b8b1b2 207 Pfam PF02563 Polysaccharide biosynthesis/export protein 43 114 6.1E-19 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 NIDE_RS13260 35b39c7bec60f2ad5152cc97f6b8b1b2 207 PANTHER PTHR33619 39 207 4.1E-42 T 23-04-2016 NIDE_RS20905 d45797ec8abeb400543ebfa2cb26f66d 558 SMART SM00028 471 504 13.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20905 d45797ec8abeb400543ebfa2cb26f66d 558 SMART SM00028 508 541 0.021 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20905 d45797ec8abeb400543ebfa2cb26f66d 558 PANTHER PTHR26312 40 50 2.2E-14 T 23-04-2016 NIDE_RS20905 d45797ec8abeb400543ebfa2cb26f66d 558 PANTHER PTHR26312 445 551 2.2E-14 T 23-04-2016 NIDE_RS20905 d45797ec8abeb400543ebfa2cb26f66d 558 SUPERFAMILY SSF48452 442 551 5.82E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20905 d45797ec8abeb400543ebfa2cb26f66d 558 Pfam PF13525 Outer membrane lipoprotein 434 556 6.1E-11 T 23-04-2016 NIDE_RS20905 d45797ec8abeb400543ebfa2cb26f66d 558 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 435 550 5.6E-32 T 23-04-2016 IPR014162 Tol-Pal system, YbgF NIDE_RS20905 d45797ec8abeb400543ebfa2cb26f66d 558 Gene3D G3DSA:1.25.40.10 443 548 6.0E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20905 d45797ec8abeb400543ebfa2cb26f66d 558 PANTHER PTHR26312:SF74 40 50 2.2E-14 T 23-04-2016 NIDE_RS20905 d45797ec8abeb400543ebfa2cb26f66d 558 PANTHER PTHR26312:SF74 445 551 2.2E-14 T 23-04-2016 NIDE_RS14465 bbe9e53c1703042b29faa57435218dbb 274 PANTHER PTHR30632 1 258 1.3E-49 T 23-04-2016 NIDE_RS14465 bbe9e53c1703042b29faa57435218dbb 274 Gene3D G3DSA:3.40.190.10 16 106 2.2E-16 T 23-04-2016 NIDE_RS14465 bbe9e53c1703042b29faa57435218dbb 274 Gene3D G3DSA:3.40.190.10 221 257 2.2E-16 T 23-04-2016 NIDE_RS14465 bbe9e53c1703042b29faa57435218dbb 274 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 39 256 1.4E-46 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 NIDE_RS14465 bbe9e53c1703042b29faa57435218dbb 274 Pfam PF13531 Bacterial extracellular solute-binding protein 34 257 4.1E-43 T 23-04-2016 NIDE_RS14465 bbe9e53c1703042b29faa57435218dbb 274 SUPERFAMILY SSF53850 32 258 1.09E-53 T 23-04-2016 NIDE_RS14465 bbe9e53c1703042b29faa57435218dbb 274 Gene3D G3DSA:3.40.190.10 114 220 1.9E-25 T 23-04-2016 NIDE_RS14465 bbe9e53c1703042b29faa57435218dbb 274 PIRSF PIRSF004846 1 261 7.2E-57 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 NIDE_RS18085 19d96867c6a06b162e88eda0845c4648 555 SUPERFAMILY SSF90123 24 326 2.62E-18 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS18085 19d96867c6a06b162e88eda0845c4648 555 PANTHER PTHR24221:SF161 23 507 1.3E-31 T 23-04-2016 NIDE_RS18085 19d96867c6a06b162e88eda0845c4648 555 PANTHER PTHR24221 23 507 1.3E-31 T 23-04-2016 NIDE_RS18085 19d96867c6a06b162e88eda0845c4648 555 Gene3D G3DSA:3.40.50.300 346 554 9.6E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18085 19d96867c6a06b162e88eda0845c4648 555 Pfam PF00005 ABC transporter 364 507 2.8E-7 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS18085 19d96867c6a06b162e88eda0845c4648 555 SUPERFAMILY SSF52540 341 554 2.31E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18085 19d96867c6a06b162e88eda0845c4648 555 Gene3D G3DSA:1.20.1560.10 23 302 3.1E-9 T 23-04-2016 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 SUPERFAMILY SSF46894 150 213 1.9E-17 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 Pfam PF00072 Response regulator receiver domain 9 113 1.0E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 171 1.3E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 187 199 1.3E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 187 1.3E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 SMART SM00448 7 120 1.9E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 209 7.6E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 SMART SM00421 154 211 1.1E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 SUPERFAMILY SSF52172 7 134 6.83E-28 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 Gene3D G3DSA:3.40.50.2300 7 126 7.1E-29 T 23-04-2016 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 Gene3D G3DSA:1.10.10.10 155 213 1.2E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 PANTHER PTHR26402 7 208 5.0E-54 T 23-04-2016 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 PANTHER PTHR26402:SF588 7 208 5.0E-54 T 23-04-2016 NIDE_RS02675 c38b78464ef9000820ddac31a3160a5e 226 ProSitePatterns PS00622 LuxR-type HTH domain signature. 171 198 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04025 1f85d1b8d8969cc984590a28c1ee0b69 208 Gene3D G3DSA:2.40.160.20 40 206 1.1E-15 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS04025 1f85d1b8d8969cc984590a28c1ee0b69 208 SUPERFAMILY SSF56925 37 207 1.52E-15 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS04025 1f85d1b8d8969cc984590a28c1ee0b69 208 Pfam PF13505 Outer membrane protein beta-barrel domain 8 206 7.3E-13 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel NIDE_RS20550 308785accddaacaadaf2314066874a60 489 Gene3D G3DSA:3.40.50.10090 261 369 9.5E-10 T 23-04-2016 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 Gene3D G3DSA:3.40.50.10090 374 481 3.1E-9 T 23-04-2016 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 SUPERFAMILY SSF69618 257 484 6.02E-30 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 Pfam PF02602 Uroporphyrinogen-III synthase HemD 271 480 3.9E-23 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 Gene3D G3DSA:3.40.1010.10 7 122 1.8E-37 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 8 244 9.9E-73 T 23-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 9 220 7.3E-45 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 13 27 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 SUPERFAMILY SSF53790 5 258 8.37E-70 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 PANTHER PTHR21091:SF16 7 241 3.1E-62 T 23-04-2016 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 Gene3D G3DSA:3.30.950.10 123 260 7.3E-40 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 87 120 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 NIDE_RS20550 308785accddaacaadaf2314066874a60 489 PANTHER PTHR21091 7 241 3.1E-62 T 23-04-2016 NIDE_RS15545 c4fb60ac8ed30238acd7930eee01c83e 303 Gene3D G3DSA:1.10.3720.10 10 289 2.2E-63 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS15545 c4fb60ac8ed30238acd7930eee01c83e 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 287 1.2E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS15545 c4fb60ac8ed30238acd7930eee01c83e 303 PANTHER PTHR30406 11 303 2.6E-98 T 23-04-2016 NIDE_RS15545 c4fb60ac8ed30238acd7930eee01c83e 303 PANTHER PTHR30406:SF2 11 303 2.6E-98 T 23-04-2016 NIDE_RS15545 c4fb60ac8ed30238acd7930eee01c83e 303 SUPERFAMILY SSF161098 61 286 1.57E-61 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS12415 0bfacb3c1ca52b8801d547d04f31e238 374 PANTHER PTHR23028 2 334 3.0E-27 T 23-04-2016 NIDE_RS12415 0bfacb3c1ca52b8801d547d04f31e238 374 Pfam PF01757 Acyltransferase family 10 334 2.9E-21 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 Gene3D G3DSA:3.40.50.150 353 439 1.7E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 Gene3D G3DSA:3.40.50.150 166 316 1.7E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 SUPERFAMILY SSF110849 5 136 8.02E-27 T 23-04-2016 IPR003115 ParB/Sulfiredoxin NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 SUPERFAMILY SSF53335 169 445 6.56E-49 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 203 208 - T 23-04-2016 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 Pfam PF01555 DNA methylase 200 433 6.2E-21 T 23-04-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 375 392 7.6E-17 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 394 412 7.6E-17 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 417 437 7.6E-17 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 198 212 7.6E-17 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 Pfam PF02195 ParB-like nuclease domain 11 78 1.3E-10 T 23-04-2016 IPR003115 ParB/Sulfiredoxin NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 SMART SM00470 7 93 7.5E-11 T 23-04-2016 IPR003115 ParB/Sulfiredoxin NIDE_RS00435 3edcc8c0c27dd3609f40d333aca6b078 469 Gene3D G3DSA:3.90.1530.10 5 92 3.6E-15 T 23-04-2016 NIDE_RS18140 17f6bbe8e13bcb87e452ef30dcf68157 323 PANTHER PTHR11746 2 323 1.5E-43 T 23-04-2016 NIDE_RS18140 17f6bbe8e13bcb87e452ef30dcf68157 323 SUPERFAMILY SSF53335 86 319 5.02E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS18140 17f6bbe8e13bcb87e452ef30dcf68157 323 Gene3D G3DSA:3.40.50.150 96 321 7.5E-44 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS18140 17f6bbe8e13bcb87e452ef30dcf68157 323 PANTHER PTHR11746:SF63 2 323 1.5E-43 T 23-04-2016 NIDE_RS18140 17f6bbe8e13bcb87e452ef30dcf68157 323 Pfam PF16864 Dimerisation domain 6 87 3.0E-16 T 23-04-2016 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain NIDE_RS18140 17f6bbe8e13bcb87e452ef30dcf68157 323 Gene3D G3DSA:1.10.10.10 2 78 1.2E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS18140 17f6bbe8e13bcb87e452ef30dcf68157 323 PIRSF PIRSF005739 2 321 2.7E-19 T 23-04-2016 IPR016461 O-methyltransferase COMT-type GO:0008168 NIDE_RS18140 17f6bbe8e13bcb87e452ef30dcf68157 323 SUPERFAMILY SSF46785 3 84 3.38E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS18140 17f6bbe8e13bcb87e452ef30dcf68157 323 Pfam PF00891 O-methyltransferase 114 306 1.4E-28 T 23-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 NIDE_RS13730 41dde96fca46f1b3bcbcf8ab7be6f478 348 SUPERFAMILY SSF51569 7 273 1.2E-77 T 23-04-2016 NIDE_RS13730 41dde96fca46f1b3bcbcf8ab7be6f478 348 Gene3D G3DSA:3.90.1210.10 284 346 2.6E-18 T 23-04-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal NIDE_RS13730 41dde96fca46f1b3bcbcf8ab7be6f478 348 Pfam PF08666 SAF domain 288 346 9.9E-10 T 23-04-2016 IPR013974 SAF domain NIDE_RS13730 41dde96fca46f1b3bcbcf8ab7be6f478 348 Pfam PF03102 NeuB family 40 269 1.7E-74 T 23-04-2016 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 NIDE_RS13730 41dde96fca46f1b3bcbcf8ab7be6f478 348 SMART SM00858 286 347 1.2E-11 T 23-04-2016 IPR013974 SAF domain NIDE_RS13730 41dde96fca46f1b3bcbcf8ab7be6f478 348 Gene3D G3DSA:3.20.20.70 8 269 1.0E-90 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS13730 41dde96fca46f1b3bcbcf8ab7be6f478 348 SUPERFAMILY SSF51269 285 346 2.49E-11 T 23-04-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal NIDE_RS13730 41dde96fca46f1b3bcbcf8ab7be6f478 348 PANTHER PTHR23416:SF1 2 295 1.4E-84 T 23-04-2016 NIDE_RS13730 41dde96fca46f1b3bcbcf8ab7be6f478 348 PANTHER PTHR23416 2 295 1.4E-84 T 23-04-2016 NIDE_RS15760 18e0978395452fef6692168f8a475746 381 PANTHER PTHR21152 3 378 1.3E-127 T 23-04-2016 NIDE_RS15760 18e0978395452fef6692168f8a475746 381 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 182 202 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site NIDE_RS15760 18e0978395452fef6692168f8a475746 381 Gene3D G3DSA:3.40.640.10 15 255 1.6E-57 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS15760 18e0978395452fef6692168f8a475746 381 PIRSF PIRSF000524 1 380 3.3E-141 T 23-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 NIDE_RS15760 18e0978395452fef6692168f8a475746 381 Pfam PF00266 Aminotransferase class-V 5 340 2.1E-45 T 23-04-2016 IPR000192 Aminotransferase class V domain NIDE_RS15760 18e0978395452fef6692168f8a475746 381 Gene3D G3DSA:3.90.1150.10 256 363 1.8E-39 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS15760 18e0978395452fef6692168f8a475746 381 SUPERFAMILY SSF53383 3 362 7.6E-102 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS15760 18e0978395452fef6692168f8a475746 381 PANTHER PTHR21152:SF21 3 378 1.3E-127 T 23-04-2016 NIDE_RS15105 0c10916d778c5bfb90daec0c65eda49b 329 SUPERFAMILY SSF46785 15 82 4.59E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS15105 0c10916d778c5bfb90daec0c65eda49b 329 PANTHER PTHR11746:SF63 16 271 2.0E-34 T 23-04-2016 NIDE_RS15105 0c10916d778c5bfb90daec0c65eda49b 329 SUPERFAMILY SSF53335 91 316 1.79E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS15105 0c10916d778c5bfb90daec0c65eda49b 329 PIRSF PIRSF005739 4 323 1.3E-6 T 23-04-2016 IPR016461 O-methyltransferase COMT-type GO:0008168 NIDE_RS15105 0c10916d778c5bfb90daec0c65eda49b 329 Gene3D G3DSA:1.10.10.10 13 82 2.3E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS15105 0c10916d778c5bfb90daec0c65eda49b 329 Pfam PF16864 Dimerisation domain 16 90 5.7E-17 T 23-04-2016 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain NIDE_RS15105 0c10916d778c5bfb90daec0c65eda49b 329 PANTHER PTHR11746 16 271 2.0E-34 T 23-04-2016 NIDE_RS15105 0c10916d778c5bfb90daec0c65eda49b 329 Pfam PF00891 O-methyltransferase 106 312 8.2E-22 T 23-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 NIDE_RS15105 0c10916d778c5bfb90daec0c65eda49b 329 Gene3D G3DSA:3.40.50.150 87 314 9.0E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20995 01dbea8e686930210452ed5be73cc0a0 650 PANTHER PTHR35894:SF1 2 298 1.5E-71 T 23-04-2016 NIDE_RS20995 01dbea8e686930210452ed5be73cc0a0 650 Pfam PF11845 Protein of unknown function (DUF3365) 487 638 3.5E-21 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS20995 01dbea8e686930210452ed5be73cc0a0 650 SMART SM00382 42 196 8.0E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS20995 01dbea8e686930210452ed5be73cc0a0 650 PANTHER PTHR35894 2 298 1.5E-71 T 23-04-2016 NIDE_RS20995 01dbea8e686930210452ed5be73cc0a0 650 Gene3D G3DSA:3.40.50.300 28 177 1.4E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20995 01dbea8e686930210452ed5be73cc0a0 650 Pfam PF13401 AAA domain 41 177 1.2E-22 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS20995 01dbea8e686930210452ed5be73cc0a0 650 SUPERFAMILY SSF52540 10 271 7.78E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 Pfam PF00684 DnaJ central domain 146 205 2.3E-11 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 349 1.1E-129 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 Pfam PF00226 DnaJ domain 5 70 3.0E-25 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 Gene3D G3DSA:2.60.260.20 255 333 1.2E-19 T 23-04-2016 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 Gene3D G3DSA:2.60.260.20 210 253 3.1E-20 T 23-04-2016 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 Gene3D G3DSA:2.60.260.20 108 139 3.1E-20 T 23-04-2016 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 PANTHER PTHR24078:SF190 3 358 6.5E-144 T 23-04-2016 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 SUPERFAMILY SSF49493 257 343 2.49E-22 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 SUPERFAMILY SSF46565 2 106 7.33E-34 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 Gene3D G3DSA:1.10.287.110 2 104 1.6E-35 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 SMART SM00271 4 65 3.8E-31 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 PRINTS PR00625 DnaJ domain signature 25 40 6.1E-27 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 PRINTS PR00625 DnaJ domain signature 45 65 6.1E-27 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 PRINTS PR00625 DnaJ domain signature 7 25 6.1E-27 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 PRINTS PR00625 DnaJ domain signature 65 84 6.1E-27 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 Pfam PF01556 DnaJ C terminal domain 119 332 5.9E-40 T 23-04-2016 IPR002939 Chaperone DnaJ, C-terminal NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 368 39.095 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 SUPERFAMILY SSF57938 133 210 7.19E-20 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 PANTHER PTHR24078 3 358 6.5E-144 T 23-04-2016 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 SUPERFAMILY SSF49493 212 261 2.62E-18 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 SUPERFAMILY SSF49493 114 168 2.62E-18 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 NIDE_RS07925 6d5aa5cca66120dfc25c372ee84dd467 370 Gene3D G3DSA:2.10.230.10 140 209 9.9E-21 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 NIDE_RS01645 9ef05955ee5265549e858f3458f05d81 122 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 23 111 6.0E-5 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 NIDE_RS01645 9ef05955ee5265549e858f3458f05d81 122 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 115 12.019 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 NIDE_RS01645 9ef05955ee5265549e858f3458f05d81 122 Gene3D G3DSA:3.30.230.10 12 111 1.0E-21 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS01645 9ef05955ee5265549e858f3458f05d81 122 SUPERFAMILY SSF54211 11 111 2.1E-18 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS01645 9ef05955ee5265549e858f3458f05d81 122 PANTHER PTHR33992 12 111 6.5E-16 T 23-04-2016 NIDE_RS01645 9ef05955ee5265549e858f3458f05d81 122 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 12 112 5.0E-13 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 NIDE_RS01645 9ef05955ee5265549e858f3458f05d81 122 Pfam PF00825 Ribonuclease P 12 111 2.9E-18 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 NIDE_RS15745 31760f67c42af758ac43e7203e5982cf 451 SUPERFAMILY SSF48024 13 124 1.03E-36 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 NIDE_RS15745 31760f67c42af758ac43e7203e5982cf 451 PANTHER PTHR30153 1 451 2.0E-197 T 23-04-2016 NIDE_RS15745 31760f67c42af758ac43e7203e5982cf 451 SMART SM00382 207 404 9.0E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS15745 31760f67c42af758ac43e7203e5982cf 451 SUPERFAMILY SSF52540 188 436 1.03E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15745 31760f67c42af758ac43e7203e5982cf 451 Pfam PF00772 DnaB-like helicase N terminal domain 15 116 4.1E-35 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 NIDE_RS15745 31760f67c42af758ac43e7203e5982cf 451 Gene3D G3DSA:1.10.860.10 15 117 1.1E-37 T 23-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal NIDE_RS15745 31760f67c42af758ac43e7203e5982cf 451 Pfam PF03796 DnaB-like helicase C terminal domain 190 444 2.3E-110 T 23-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 NIDE_RS15745 31760f67c42af758ac43e7203e5982cf 451 Gene3D G3DSA:3.40.50.300 176 446 4.6E-102 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15745 31760f67c42af758ac43e7203e5982cf 451 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 14 446 1.3E-176 T 23-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 NIDE_RS03795 05a7b98be1252c917386951752d2bc8e 254 Pfam PF02552 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit 52 185 1.6E-35 T 23-04-2016 IPR003704 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit GO:0019385 NIDE_RS13570 c8212841cb90889baffc3a8e459a4349 812 SUPERFAMILY SSF56935 138 811 9.57E-64 T 23-04-2016 NIDE_RS13570 c8212841cb90889baffc3a8e459a4349 812 Pfam PF13620 Carboxypeptidase regulatory-like domain 39 118 4.3E-10 T 23-04-2016 NIDE_RS13570 c8212841cb90889baffc3a8e459a4349 812 Pfam PF07715 TonB-dependent Receptor Plug Domain 139 235 4.2E-5 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS13570 c8212841cb90889baffc3a8e459a4349 812 SUPERFAMILY SSF49464 39 131 6.28E-7 T 23-04-2016 IPR008969 Carboxypeptidase-like, regulatory domain NIDE_RS13570 c8212841cb90889baffc3a8e459a4349 812 Gene3D G3DSA:2.170.130.10 138 236 1.6E-5 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS13570 c8212841cb90889baffc3a8e459a4349 812 Gene3D G3DSA:2.60.40.1120 39 129 1.3E-10 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain NIDE_RS13570 c8212841cb90889baffc3a8e459a4349 812 Pfam PF00593 TonB dependent receptor 535 808 1.1E-12 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS13570 c8212841cb90889baffc3a8e459a4349 812 Gene3D G3DSA:2.40.170.20 237 810 9.8E-46 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 39.775 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 Gene3D G3DSA:1.10.287.610 100 152 2.8E-19 T 23-04-2016 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 5.8E-101 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 PRINTS PR00395 Ribosomal protein S2 signature 158 175 7.6E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 PRINTS PR00395 Ribosomal protein S2 signature 6 24 7.6E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 PRINTS PR00395 Ribosomal protein S2 signature 37 46 7.6E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 PRINTS PR00395 Ribosomal protein S2 signature 175 186 7.6E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 PRINTS PR00395 Ribosomal protein S2 signature 87 104 7.6E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 PRINTS PR00395 Ribosomal protein S2 signature 196 210 7.6E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 Pfam PF00318 Ribosomal protein S2 9 224 2.9E-91 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 23-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 Gene3D G3DSA:3.40.50.10490 23 99 6.5E-64 T 23-04-2016 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 Gene3D G3DSA:3.40.50.10490 158 235 6.5E-64 T 23-04-2016 NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 SUPERFAMILY SSF52313 6 235 8.76E-91 T 23-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain NIDE_RS12660 003ee6140bafeae183eea08b7ebe79fd 257 PANTHER PTHR12534 1 233 1.3E-105 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 NIDE_RS05785 79de4e69acefcf21413c0355995fcb51 232 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 6 227 53.517 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 NIDE_RS05785 79de4e69acefcf21413c0355995fcb51 232 Pfam PF06508 Queuosine biosynthesis protein QueC 7 220 8.3E-74 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 NIDE_RS05785 79de4e69acefcf21413c0355995fcb51 232 SUPERFAMILY SSF52402 6 230 8.16E-63 T 23-04-2016 NIDE_RS05785 79de4e69acefcf21413c0355995fcb51 232 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 8 214 2.8E-62 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 NIDE_RS05785 79de4e69acefcf21413c0355995fcb51 232 PIRSF PIRSF006293 5 231 7.4E-76 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 NIDE_RS05785 79de4e69acefcf21413c0355995fcb51 232 PANTHER PTHR11587:SF3 7 232 1.8E-95 T 23-04-2016 NIDE_RS05785 79de4e69acefcf21413c0355995fcb51 232 PANTHER PTHR11587 7 232 1.8E-95 T 23-04-2016 NIDE_RS05785 79de4e69acefcf21413c0355995fcb51 232 Gene3D G3DSA:3.40.50.620 7 231 2.0E-77 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS06990 82b1a1975b18a01ad3f04ec132c4442c 261 PANTHER PTHR10291 1 256 8.0E-116 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 NIDE_RS06990 82b1a1975b18a01ad3f04ec132c4442c 261 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 26 254 40.215 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 NIDE_RS06990 82b1a1975b18a01ad3f04ec132c4442c 261 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 199 216 - T 23-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 NIDE_RS06990 82b1a1975b18a01ad3f04ec132c4442c 261 Pfam PF01255 Putative undecaprenyl diphosphate synthase 33 253 1.0E-80 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 NIDE_RS06990 82b1a1975b18a01ad3f04ec132c4442c 261 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 26 253 3.8E-87 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 NIDE_RS06990 82b1a1975b18a01ad3f04ec132c4442c 261 Gene3D G3DSA:3.40.1180.10 18 256 6.5E-99 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 NIDE_RS06990 82b1a1975b18a01ad3f04ec132c4442c 261 SUPERFAMILY SSF64005 22 248 1.07E-85 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 NIDE_RS14105 1068e3f7e6f80829a4d407f29b89ff61 205 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 2 200 1.8E-38 T 23-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 NIDE_RS14105 1068e3f7e6f80829a4d407f29b89ff61 205 PANTHER PTHR35561:SF1 1 202 5.5E-31 T 23-04-2016 NIDE_RS14105 1068e3f7e6f80829a4d407f29b89ff61 205 SUPERFAMILY SSF55144 3 201 2.27E-37 T 23-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase NIDE_RS14105 1068e3f7e6f80829a4d407f29b89ff61 205 Pfam PF02834 LigT like Phosphoesterase 27 99 5.2E-12 T 23-04-2016 IPR014051 Phosphoesterase, HXTX NIDE_RS14105 1068e3f7e6f80829a4d407f29b89ff61 205 Pfam PF02834 LigT like Phosphoesterase 112 192 1.4E-7 T 23-04-2016 IPR014051 Phosphoesterase, HXTX NIDE_RS14105 1068e3f7e6f80829a4d407f29b89ff61 205 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 2 200 24.347 T 23-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 NIDE_RS14105 1068e3f7e6f80829a4d407f29b89ff61 205 Gene3D G3DSA:3.90.1140.10 2 202 2.1E-49 T 23-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase NIDE_RS14105 1068e3f7e6f80829a4d407f29b89ff61 205 PANTHER PTHR35561 1 202 5.5E-31 T 23-04-2016 NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 PANTHER PTHR30347 1 341 6.3E-29 T 23-04-2016 NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 370 386 - T 23-04-2016 IPR018488 Cyclic nucleotide-binding, conserved site NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 Gene3D G3DSA:2.60.120.10 337 463 6.8E-28 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 SUPERFAMILY SSF50182 155 217 7.85E-9 T 23-04-2016 IPR010920 LSM domain NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 410 427 - T 23-04-2016 IPR018488 Cyclic nucleotide-binding, conserved site NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 Gene3D G3DSA:2.30.30.60 169 217 1.6E-9 T 23-04-2016 NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 Gene3D G3DSA:3.30.70.100 229 307 5.1E-9 T 23-04-2016 NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 SUPERFAMILY SSF51206 336 462 3.27E-26 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 SMART SM00100 343 460 3.1E-15 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 SUPERFAMILY SSF82689 225 319 2.88E-20 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 Pfam PF00027 Cyclic nucleotide-binding domain 363 447 3.1E-19 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 Pfam PF00924 Mechanosensitive ion channel 118 309 9.5E-27 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 PRINTS PR00103 cAMP-dependent protein kinase signature 379 393 6.8E-9 T 23-04-2016 NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 PRINTS PR00103 cAMP-dependent protein kinase signature 420 431 6.8E-9 T 23-04-2016 NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 PRINTS PR00103 cAMP-dependent protein kinase signature 364 378 6.8E-9 T 23-04-2016 NIDE_RS14900 83e4313d0e2d1c9976a03debe532d49e 503 PRINTS PR00103 cAMP-dependent protein kinase signature 408 417 6.8E-9 T 23-04-2016 NIDE_RS17795 1d553cacea738ac50f51dd83d2c707eb 201 Gene3D G3DSA:3.40.50.10610 11 196 3.8E-43 T 23-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component NIDE_RS17795 1d553cacea738ac50f51dd83d2c707eb 201 PANTHER PTHR36698 54 190 5.5E-25 T 23-04-2016 NIDE_RS17795 1d553cacea738ac50f51dd83d2c707eb 201 PANTHER PTHR36698:SF1 54 190 5.5E-25 T 23-04-2016 NIDE_RS17795 1d553cacea738ac50f51dd83d2c707eb 201 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 32 184 3.1E-13 T 23-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component NIDE_RS17795 1d553cacea738ac50f51dd83d2c707eb 201 SUPERFAMILY SSF159594 34 193 3.4E-34 T 23-04-2016 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 SUPERFAMILY SSF52172 2 188 3.98E-43 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 Gene3D G3DSA:3.40.50.2300 3 129 7.0E-35 T 23-04-2016 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 Gene3D G3DSA:3.40.50.300 142 317 1.2E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 SUPERFAMILY SSF52540 145 387 8.64E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 Pfam PF00158 Sigma-54 interaction domain 146 311 1.3E-65 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 169 182 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 SMART SM00448 4 116 1.2E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 PANTHER PTHR32071 6 459 2.8E-193 T 23-04-2016 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 SUPERFAMILY SSF46689 358 456 1.43E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 Gene3D G3DSA:1.10.8.60 318 394 1.2E-25 T 23-04-2016 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 Pfam PF02954 Bacterial regulatory protein, Fis family 414 454 2.3E-16 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 Pfam PF00072 Response regulator receiver domain 7 114 5.1E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 Gene3D G3DSA:1.10.10.60 403 456 2.8E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 420 437 3.8E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 437 457 3.8E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS05175 425a389d448099fc610e9519a18fffe1 461 SMART SM00382 165 308 2.0E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10005 69891ff5ed895146b5d8efeb3e743e53 308 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 231 307 4.7E-12 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS10005 69891ff5ed895146b5d8efeb3e743e53 308 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 230 307 6.8E-14 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS10005 69891ff5ed895146b5d8efeb3e743e53 308 SUPERFAMILY SSF74653 199 308 6.93E-13 T 23-04-2016 NIDE_RS10005 69891ff5ed895146b5d8efeb3e743e53 308 Gene3D G3DSA:3.30.1150.10 213 307 5.8E-12 T 23-04-2016 NIDE_RS01495 eab7bea1c5e1ef2718d0437e1fbe66c5 465 PANTHER PTHR11203:SF11 1 465 4.6E-108 T 23-04-2016 NIDE_RS01495 eab7bea1c5e1ef2718d0437e1fbe66c5 465 SMART SM00849 13 229 6.5E-12 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS01495 eab7bea1c5e1ef2718d0437e1fbe66c5 465 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 394 457 5.1E-14 T 23-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain NIDE_RS01495 eab7bea1c5e1ef2718d0437e1fbe66c5 465 SUPERFAMILY SSF56281 1 458 2.36E-120 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS01495 eab7bea1c5e1ef2718d0437e1fbe66c5 465 Pfam PF00753 Metallo-beta-lactamase superfamily 18 207 3.5E-14 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS01495 eab7bea1c5e1ef2718d0437e1fbe66c5 465 SMART SM01027 254 379 4.8E-52 T 23-04-2016 IPR022712 Beta-Casp domain NIDE_RS01495 eab7bea1c5e1ef2718d0437e1fbe66c5 465 Pfam PF10996 Beta-Casp domain 254 379 6.8E-27 T 23-04-2016 IPR022712 Beta-Casp domain NIDE_RS01495 eab7bea1c5e1ef2718d0437e1fbe66c5 465 PANTHER PTHR11203 1 465 4.6E-108 T 23-04-2016 NIDE_RS01495 eab7bea1c5e1ef2718d0437e1fbe66c5 465 Gene3D G3DSA:3.60.15.10 1 100 9.1E-49 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS01495 eab7bea1c5e1ef2718d0437e1fbe66c5 465 Gene3D G3DSA:3.60.15.10 136 263 9.1E-49 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS03435 d23c7bd394a21b945777ad87317d1f6a 330 SUPERFAMILY SSF110296 14 189 7.85E-39 T 23-04-2016 NIDE_RS03435 d23c7bd394a21b945777ad87317d1f6a 330 SUPERFAMILY SSF110296 200 326 1.12E-33 T 23-04-2016 NIDE_RS03435 d23c7bd394a21b945777ad87317d1f6a 330 Pfam PF02012 BNR/Asp-box repeat 37 47 0.093 T 23-04-2016 IPR002860 BNR repeat NIDE_RS03435 d23c7bd394a21b945777ad87317d1f6a 330 Gene3D G3DSA:2.130.10.10 151 328 1.3E-46 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS03435 d23c7bd394a21b945777ad87317d1f6a 330 Gene3D G3DSA:2.130.10.10 16 148 1.5E-34 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS01365 815e797c35933e17a9a741dc584b85e5 178 SUPERFAMILY SSF56235 2 176 7.53E-56 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS01365 815e797c35933e17a9a741dc584b85e5 178 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 6 176 2.7E-81 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 NIDE_RS01365 815e797c35933e17a9a741dc584b85e5 178 Gene3D G3DSA:3.60.20.10 6 176 4.0E-79 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS01365 815e797c35933e17a9a741dc584b85e5 178 PIRSF PIRSF039093 1 178 1.4E-83 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 NIDE_RS01365 815e797c35933e17a9a741dc584b85e5 178 PANTHER PTHR32194 1 178 5.5E-111 T 23-04-2016 NIDE_RS01365 815e797c35933e17a9a741dc584b85e5 178 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 5 176 39.144 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 NIDE_RS01365 815e797c35933e17a9a741dc584b85e5 178 Pfam PF00227 Proteasome subunit 5 174 9.0E-19 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 Pfam PF14520 Helix-hairpin-helix domain 72 130 3.8E-15 T 23-04-2016 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 Gene3D G3DSA:2.40.50.140 1 65 2.2E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 PANTHER PTHR33796 2 202 2.8E-64 T 23-04-2016 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 SUPERFAMILY SSF46929 152 201 1.09E-7 T 23-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 SUPERFAMILY SSF47781 65 134 3.11E-19 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 SUPERFAMILY SSF50249 1 63 8.0E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 199 3.1E-44 T 23-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 SMART SM00278 73 92 110.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 SMART SM00278 108 127 5.7 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 Gene3D G3DSA:1.10.8.10 154 200 7.5E-11 T 23-04-2016 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 Pfam PF01330 RuvA N terminal domain 1 62 1.9E-19 T 23-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 Gene3D G3DSA:1.10.150.20 67 141 3.2E-25 T 23-04-2016 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 200 28.821 T 23-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 NIDE_RS01925 2fa36ce445a6a326d73132114db26677 202 Pfam PF07499 RuvA, C-terminal domain 154 199 1.9E-10 T 23-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 NIDE_RS06205 7abf47ed7bff2904588b5075df94c6b9 148 SUPERFAMILY SSF64263 1 119 7.06E-45 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06205 7abf47ed7bff2904588b5075df94c6b9 148 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 116 5.6E-42 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06205 7abf47ed7bff2904588b5075df94c6b9 148 Gene3D G3DSA:3.90.1030.10 2 116 6.8E-49 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06205 7abf47ed7bff2904588b5075df94c6b9 148 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.348 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06205 7abf47ed7bff2904588b5075df94c6b9 148 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06205 7abf47ed7bff2904588b5075df94c6b9 148 PANTHER PTHR14413 1 123 9.2E-59 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06205 7abf47ed7bff2904588b5075df94c6b9 148 Pfam PF01196 Ribosomal protein L17 20 116 1.6E-34 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS08595 5cde4d9d15f615237d40e31ee15d5197 211 Pfam PF00578 AhpC/TSA family 6 134 5.7E-30 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS08595 5cde4d9d15f615237d40e31ee15d5197 211 PIRSF PIRSF000239 1 208 2.3E-77 T 23-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 NIDE_RS08595 5cde4d9d15f615237d40e31ee15d5197 211 Gene3D G3DSA:3.30.1020.10 158 210 4.8E-29 T 23-04-2016 NIDE_RS08595 5cde4d9d15f615237d40e31ee15d5197 211 PANTHER PTHR10681:SF99 3 206 1.5E-90 T 23-04-2016 NIDE_RS08595 5cde4d9d15f615237d40e31ee15d5197 211 SUPERFAMILY SSF52833 3 208 1.82E-69 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS08595 5cde4d9d15f615237d40e31ee15d5197 211 Gene3D G3DSA:3.40.30.10 4 157 3.4E-59 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS08595 5cde4d9d15f615237d40e31ee15d5197 211 PANTHER PTHR10681 3 206 1.5E-90 T 23-04-2016 NIDE_RS08595 5cde4d9d15f615237d40e31ee15d5197 211 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 194 3.0E-10 T 23-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS17350 3e98c1208ce1796b181fa9f0972b16af 213 PIRSF PIRSF020606 11 212 1.6E-61 T 23-04-2016 IPR014509 Uncharacterised conserved protein UCP020606 NIDE_RS17350 3e98c1208ce1796b181fa9f0972b16af 213 Pfam PF09997 Predicted membrane protein (DUF2238) 52 191 4.5E-51 T 23-04-2016 IPR014509 Uncharacterised conserved protein UCP020606 NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 ProSitePatterns PS00622 LuxR-type HTH domain signature. 198 225 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 SUPERFAMILY SSF75516 13 169 4.45E-8 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 PANTHER PTHR26402 184 234 5.6E-13 T 23-04-2016 NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 Pfam PF03472 Autoinducer binding domain 57 163 1.1E-5 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 Pfam PF00196 Bacterial regulatory proteins, luxR family 184 237 6.4E-21 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 Gene3D G3DSA:1.10.10.10 187 237 3.1E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 SUPERFAMILY SSF46894 172 239 3.74E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 PANTHER PTHR26402:SF102 184 234 5.6E-13 T 23-04-2016 NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 Gene3D G3DSA:3.30.450.80 13 186 1.7E-8 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 214 226 7.5E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 198 7.5E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 198 214 7.5E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20200 a4dba1534826717676a6c02d5695ed93 265 SMART SM00421 181 238 1.6E-20 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS01375 ded4a3142dec5a43b08b538c96faeb3a 298 PRINTS PR00474 Glutamate 5-kinase family signature 198 225 6.2E-6 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS01375 ded4a3142dec5a43b08b538c96faeb3a 298 PRINTS PR00474 Glutamate 5-kinase family signature 248 268 6.2E-6 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS01375 ded4a3142dec5a43b08b538c96faeb3a 298 PRINTS PR00474 Glutamate 5-kinase family signature 55 69 6.2E-6 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS01375 ded4a3142dec5a43b08b538c96faeb3a 298 PANTHER PTHR23342 1 297 1.1E-115 T 23-04-2016 NIDE_RS01375 ded4a3142dec5a43b08b538c96faeb3a 298 PIRSF PIRSF000728 9 298 8.6E-108 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS01375 ded4a3142dec5a43b08b538c96faeb3a 298 Gene3D G3DSA:3.40.1160.10 22 298 2.0E-103 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS01375 ded4a3142dec5a43b08b538c96faeb3a 298 TIGRFAM TIGR00761 argB: acetylglutamate kinase 25 273 1.1E-75 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS01375 ded4a3142dec5a43b08b538c96faeb3a 298 Hamap MF_00082_B Acetylglutamate kinase [argB]. 22 298 36.164 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS01375 ded4a3142dec5a43b08b538c96faeb3a 298 SUPERFAMILY SSF53633 3 297 3.8E-93 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS01375 ded4a3142dec5a43b08b538c96faeb3a 298 Pfam PF00696 Amino acid kinase family 24 275 4.3E-47 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS12385 ccfde842a2f8e7565cc620177c5a1566 386 Pfam PF00534 Glycosyl transferases group 1 183 351 5.1E-29 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS12385 ccfde842a2f8e7565cc620177c5a1566 386 SUPERFAMILY SSF53756 3 372 3.11E-76 T 23-04-2016 NIDE_RS12385 ccfde842a2f8e7565cc620177c5a1566 386 PANTHER PTHR12526 8 378 1.7E-64 T 23-04-2016 NIDE_RS12385 ccfde842a2f8e7565cc620177c5a1566 386 Pfam PF13439 Glycosyltransferase Family 4 11 173 1.3E-19 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS12385 ccfde842a2f8e7565cc620177c5a1566 386 Gene3D G3DSA:3.40.50.2000 158 351 4.1E-30 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PANTHER PTHR32063:SF0 838 1075 2.9E-275 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PANTHER PTHR32063:SF0 1 793 2.9E-275 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 Gene3D G3DSA:3.30.70.1430 39 137 7.3E-18 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 2.9E-35 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PRINTS PR00702 Acriflavin resistance protein family signature 327 350 2.9E-35 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PRINTS PR00702 Acriflavin resistance protein family signature 354 375 2.9E-35 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PRINTS PR00702 Acriflavin resistance protein family signature 460 483 2.9E-35 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 2.9E-35 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PRINTS PR00702 Acriflavin resistance protein family signature 382 406 2.9E-35 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 2.9E-35 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PRINTS PR00702 Acriflavin resistance protein family signature 435 458 2.9E-35 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 Gene3D G3DSA:3.30.2090.10 715 788 6.7E-5 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 Gene3D G3DSA:3.30.2090.10 833 853 6.7E-5 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PANTHER PTHR32063 838 1075 2.9E-275 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 PANTHER PTHR32063 1 793 2.9E-275 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 SUPERFAMILY SSF82714 181 261 2.62E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 SUPERFAMILY SSF82866 288 487 9.42E-41 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 Pfam PF00873 AcrB/AcrD/AcrF family 4 746 3.0E-143 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 Pfam PF00873 AcrB/AcrD/AcrF family 835 1069 5.5E-65 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 Gene3D G3DSA:1.10.3850.10 857 1070 9.8E-58 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 Gene3D G3DSA:1.10.3850.10 270 488 5.9E-53 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 SUPERFAMILY SSF82866 849 1073 1.05E-50 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 SUPERFAMILY SSF82693 134 180 5.23E-16 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 SUPERFAMILY SSF82693 266 321 5.23E-16 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 SUPERFAMILY SSF82693 39 133 5.23E-19 T 23-04-2016 NIDE_RS07755 7e1ae0211d83d1818d1a936af760ff8c 1089 Gene3D G3DSA:3.30.2090.10 181 261 7.8E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS16040 15f5cd677ee74cb157afdc3940ab1412 184 PANTHER PTHR39336:SF2 3 176 2.4E-51 T 23-04-2016 NIDE_RS16040 15f5cd677ee74cb157afdc3940ab1412 184 PANTHER PTHR39336 3 176 2.4E-51 T 23-04-2016 NIDE_RS16040 15f5cd677ee74cb157afdc3940ab1412 184 SUPERFAMILY SSF50475 7 109 2.05E-9 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS16040 15f5cd677ee74cb157afdc3940ab1412 184 Gene3D G3DSA:2.30.110.10 5 107 6.9E-14 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS16040 15f5cd677ee74cb157afdc3940ab1412 184 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 10 99 2.0E-7 T 23-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 NIDE_RS16140 1668526fd35595530595b8b21b55d1cf 349 Pfam PF04773 FecR protein 142 233 4.7E-22 T 23-04-2016 IPR006860 FecR protein NIDE_RS16140 1668526fd35595530595b8b21b55d1cf 349 PIRSF PIRSF018266 30 349 1.1E-84 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component NIDE_RS16140 1668526fd35595530595b8b21b55d1cf 349 PANTHER PTHR30273:SF2 32 349 2.9E-66 T 23-04-2016 NIDE_RS16140 1668526fd35595530595b8b21b55d1cf 349 Pfam PF16344 Domain of unknown function (DUF4974) 250 338 1.2E-7 T 23-04-2016 IPR032508 Protein FecR, C-terminal NIDE_RS16140 1668526fd35595530595b8b21b55d1cf 349 Pfam PF16220 Domain of unknown function (DUF4880) 41 82 1.2E-11 T 23-04-2016 IPR032623 FecR, N-terminal NIDE_RS16140 1668526fd35595530595b8b21b55d1cf 349 PANTHER PTHR30273 32 349 2.9E-66 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 Pfam PF03190 Protein of unknown function, DUF255 11 173 2.5E-74 T 23-04-2016 IPR004879 Domain of unknown function DUF255 NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 SUPERFAMILY SSF52833 8 138 1.68E-34 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 Gene3D G3DSA:1.50.10.10 368 538 4.7E-26 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 Gene3D G3DSA:1.50.10.10 221 331 4.7E-26 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 Pfam PF00248 Aldo/keto reductase family 753 940 4.3E-18 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 SUPERFAMILY SSF48208 200 565 5.95E-84 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 PANTHER PTHR12145:SF11 10 706 3.9E-296 T 23-04-2016 NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 SUPERFAMILY SSF51430 855 1020 1.44E-28 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 SUPERFAMILY SSF51430 744 824 1.44E-28 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 PANTHER PTHR12145 10 706 3.9E-296 T 23-04-2016 NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 Gene3D G3DSA:3.20.20.100 1127 1224 8.5E-36 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 Gene3D G3DSA:3.20.20.100 744 1021 8.5E-36 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS20660 6a3ae37cdbd9e673976c5e99c67f6d90 1236 Gene3D G3DSA:3.40.30.10 28 157 7.0E-35 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS12920 9359db09b28b7d86ed38a674b2eeb656 397 SUPERFAMILY SSF109604 129 380 4.71E-63 T 23-04-2016 NIDE_RS12920 9359db09b28b7d86ed38a674b2eeb656 397 SUPERFAMILY SSF52172 1 126 2.99E-23 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS12920 9359db09b28b7d86ed38a674b2eeb656 397 Gene3D G3DSA:1.10.3150.10 121 380 5.6E-74 T 23-04-2016 IPR013976 Metal-dependent hydrolase HDOD NIDE_RS12920 9359db09b28b7d86ed38a674b2eeb656 397 Pfam PF00072 Response regulator receiver domain 4 114 1.8E-15 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS12920 9359db09b28b7d86ed38a674b2eeb656 397 SMART SM00448 2 114 2.7E-13 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS12920 9359db09b28b7d86ed38a674b2eeb656 397 PANTHER PTHR33525:SF3 132 359 2.9E-50 T 23-04-2016 NIDE_RS12920 9359db09b28b7d86ed38a674b2eeb656 397 PIRSF PIRSF036883 1 389 7.8E-71 T 23-04-2016 IPR014626 Signal transduction response regulator with modified HD-GYP domain, putative NIDE_RS12920 9359db09b28b7d86ed38a674b2eeb656 397 Pfam PF08668 HDOD domain 139 336 1.0E-55 T 23-04-2016 IPR013976 Metal-dependent hydrolase HDOD NIDE_RS12920 9359db09b28b7d86ed38a674b2eeb656 397 Gene3D G3DSA:3.40.50.2300 2 120 8.8E-24 T 23-04-2016 NIDE_RS12920 9359db09b28b7d86ed38a674b2eeb656 397 PANTHER PTHR33525 132 359 2.9E-50 T 23-04-2016 NIDE_RS07745 de46625976ca477a4639f0efb47d6291 472 SUPERFAMILY SSF56954 10 444 1.26E-70 T 23-04-2016 NIDE_RS07745 de46625976ca477a4639f0efb47d6291 472 Gene3D G3DSA:1.20.1600.10 45 443 3.0E-61 T 23-04-2016 NIDE_RS07745 de46625976ca477a4639f0efb47d6291 472 PANTHER PTHR30026 43 441 2.5E-44 T 23-04-2016 NIDE_RS07745 de46625976ca477a4639f0efb47d6291 472 Pfam PF02321 Outer membrane efflux protein 46 238 8.4E-20 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS07745 de46625976ca477a4639f0efb47d6291 472 Pfam PF02321 Outer membrane efflux protein 260 443 7.0E-31 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS07745 de46625976ca477a4639f0efb47d6291 472 PANTHER PTHR30026:SF4 43 441 2.5E-44 T 23-04-2016 NIDE_RS16850 840a77ec94e9a60b7f359586b44f5bd5 98 PANTHER PTHR33713 1 92 1.3E-13 T 23-04-2016 NIDE_RS16850 840a77ec94e9a60b7f359586b44f5bd5 98 Gene3D G3DSA:3.40.1620.10 1 50 1.3E-13 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS16850 840a77ec94e9a60b7f359586b44f5bd5 98 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 73 9.0E-18 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS16850 840a77ec94e9a60b7f359586b44f5bd5 98 SUPERFAMILY SSF143120 3 74 3.53E-17 T 23-04-2016 NIDE_RS16850 840a77ec94e9a60b7f359586b44f5bd5 98 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 53 8.0E-11 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 3 563 36.093 T 23-04-2016 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 7.4E-26 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 7.4E-26 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 PRINTS PR01042 Aspartyl-tRNA synthetase signature 195 207 7.4E-26 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 PRINTS PR01042 Aspartyl-tRNA synthetase signature 212 225 7.4E-26 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 Gene3D G3DSA:3.30.930.10 414 583 8.6E-115 T 23-04-2016 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 Gene3D G3DSA:3.30.930.10 136 281 8.6E-115 T 23-04-2016 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 Pfam PF00152 tRNA synthetases class II (D, K and N) 123 558 1.6E-106 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 Gene3D G3DSA:3.30.1360.30 282 413 2.3E-41 T 23-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 Pfam PF01336 OB-fold nucleic acid binding domain 20 105 6.3E-16 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 PANTHER PTHR22594 371 571 1.6E-254 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 PANTHER PTHR22594 1 302 1.6E-254 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 SUPERFAMILY SSF55261 294 419 5.56E-34 T 23-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 Gene3D G3DSA:2.40.50.140 3 111 4.4E-39 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 SUPERFAMILY SSF55681 424 583 2.49E-105 T 23-04-2016 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 SUPERFAMILY SSF55681 116 297 2.49E-105 T 23-04-2016 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 SUPERFAMILY SSF50249 3 108 2.67E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 Pfam PF02938 GAD domain 313 405 1.8E-20 T 23-04-2016 IPR029351 GAD domain NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 PANTHER PTHR22594:SF5 371 571 1.6E-254 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 PANTHER PTHR22594:SF5 1 302 1.6E-254 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 NIDE_RS06610 dc887c33537664407b28d5c1ee9e5f9b 587 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 4 582 8.0E-235 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 NIDE_RS17170 067e16a7f9205b1ffbacfea3e6d5eb0d 154 PANTHER PTHR13355:SF8 25 150 8.6E-34 T 23-04-2016 NIDE_RS17170 067e16a7f9205b1ffbacfea3e6d5eb0d 154 SUPERFAMILY SSF55729 14 145 1.66E-38 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS17170 067e16a7f9205b1ffbacfea3e6d5eb0d 154 PANTHER PTHR13355 25 150 8.6E-34 T 23-04-2016 NIDE_RS17170 067e16a7f9205b1ffbacfea3e6d5eb0d 154 Gene3D G3DSA:3.40.630.30 21 143 1.2E-39 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS17170 067e16a7f9205b1ffbacfea3e6d5eb0d 154 Pfam PF13673 Acetyltransferase (GNAT) domain 47 145 6.9E-24 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS13090 7c22520418cca0a78ab92ee9fa39fb80 248 Gene3D G3DSA:3.40.50.150 30 246 1.8E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13090 7c22520418cca0a78ab92ee9fa39fb80 248 Pfam PF08241 Methyltransferase domain 45 139 7.5E-15 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS13090 7c22520418cca0a78ab92ee9fa39fb80 248 SUPERFAMILY SSF53335 25 226 9.97E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13090 7c22520418cca0a78ab92ee9fa39fb80 248 PANTHER PTHR10108 91 211 8.4E-13 T 23-04-2016 NIDE_RS05280 ef6806c81f72ef88dabe2cd66fd725b9 214 Pfam PF00174 Oxidoreductase molybdopterin binding domain 55 196 2.0E-33 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS05280 ef6806c81f72ef88dabe2cd66fd725b9 214 PANTHER PTHR19372 31 213 6.1E-57 T 23-04-2016 NIDE_RS05280 ef6806c81f72ef88dabe2cd66fd725b9 214 SUPERFAMILY SSF56524 29 213 2.49E-57 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS05280 ef6806c81f72ef88dabe2cd66fd725b9 214 Gene3D G3DSA:3.90.420.10 31 212 1.1E-49 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS05280 ef6806c81f72ef88dabe2cd66fd725b9 214 PRINTS PR00407 Eukaryotic molybdopterin domain signature 142 158 6.1E-6 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS05280 ef6806c81f72ef88dabe2cd66fd725b9 214 PRINTS PR00407 Eukaryotic molybdopterin domain signature 175 188 6.1E-6 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS05280 ef6806c81f72ef88dabe2cd66fd725b9 214 PRINTS PR00407 Eukaryotic molybdopterin domain signature 159 172 6.1E-6 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 Pfam PF00270 DEAD/DEAH box helicase 578 739 1.6E-17 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 SMART SM00490 799 883 5.0E-13 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 Gene3D G3DSA:3.40.50.300 562 759 5.5E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 Gene3D G3DSA:3.30.2060.10 122 198 6.7E-13 T 23-04-2016 NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 SUPERFAMILY SSF141259 444 521 1.07E-20 T 23-04-2016 IPR003711 CarD-like/TRCF domain NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 Gene3D G3DSA:3.40.50.300 773 929 5.2E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 SUPERFAMILY SSF52540 354 441 6.04E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 21 1074 28.196 T 23-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 SUPERFAMILY SSF52540 496 756 7.16E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 PANTHER PTHR14025 358 1098 0.0 T 23-04-2016 NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 PANTHER PTHR14025:SF21 358 1098 0.0 T 23-04-2016 NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 138 1049 0.0 T 23-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 Pfam PF00271 Helicase conserved C-terminal domain 778 883 3.0E-14 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 SUPERFAMILY SSF52540 755 963 1.74E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 Pfam PF02559 CarD-like/TRCF domain 453 548 5.9E-26 T 23-04-2016 IPR003711 CarD-like/TRCF domain NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 Pfam PF03461 TRCF domain 977 1067 1.2E-25 T 23-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 SMART SM01058 452 549 5.8E-42 T 23-04-2016 IPR003711 CarD-like/TRCF domain NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 SUPERFAMILY SSF52540 9 311 7.67E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 SMART SM00982 976 1076 3.4E-36 T 23-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 SUPERFAMILY SSF143517 962 1111 4.97E-33 T 23-04-2016 NIDE_RS19680 2a00ee3f1149f9063a6504bd39ac137e 1128 SMART SM00487 573 763 1.2E-32 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 SUPERFAMILY SSF81330 13 133 7.72E-36 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 139 6.3E-42 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 23-04-2016 IPR019823 Large-conductance mechanosensitive channel, conserved site NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 PANTHER PTHR30266:SF2 1 141 1.5E-52 T 23-04-2016 NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 137 1.7E-44 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 140 27.601 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 Gene3D G3DSA:1.20.5.220 127 136 9.9E-4 T 23-04-2016 IPR029027 Single alpha-helix domain NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 PANTHER PTHR30266 1 141 1.5E-52 T 23-04-2016 NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 92 100 6.2E-11 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 6.2E-11 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 NIDE_RS01235 25a822a35b2e81f075bf318c189071f6 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 101 110 6.2E-11 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 NIDE_RS15505 89b11818eb091de840015f9bf807d0a6 323 PANTHER PTHR11732 1 312 6.4E-123 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta NIDE_RS15505 89b11818eb091de840015f9bf807d0a6 323 Pfam PF00248 Aldo/keto reductase family 15 309 3.3E-75 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS15505 89b11818eb091de840015f9bf807d0a6 323 Gene3D G3DSA:3.20.20.100 10 311 9.9E-100 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS15505 89b11818eb091de840015f9bf807d0a6 323 SUPERFAMILY SSF51430 1 312 3.8E-98 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS09360 7a8c7609194d4f6fa524292edffce3c1 357 SUPERFAMILY SSF55781 189 344 2.03E-20 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS09360 7a8c7609194d4f6fa524292edffce3c1 357 Pfam PF13185 GAF domain 206 341 7.2E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS09360 7a8c7609194d4f6fa524292edffce3c1 357 Gene3D G3DSA:3.30.450.40 195 345 2.6E-19 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS09360 7a8c7609194d4f6fa524292edffce3c1 357 SMART SM00065 206 350 3.0E-5 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS19360 1b682d5acfb9d1437d67d7234f674c5f 210 SUPERFAMILY SSF88946 24 108 2.67E-24 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS19360 1b682d5acfb9d1437d67d7234f674c5f 210 PANTHER PTHR30173 25 193 3.7E-44 T 23-04-2016 NIDE_RS19360 1b682d5acfb9d1437d67d7234f674c5f 210 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 192 5.3E-33 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS19360 1b682d5acfb9d1437d67d7234f674c5f 210 SUPERFAMILY SSF88659 128 193 8.97E-17 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS19360 1b682d5acfb9d1437d67d7234f674c5f 210 Gene3D G3DSA:1.10.10.10 129 193 3.1E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS19360 1b682d5acfb9d1437d67d7234f674c5f 210 PANTHER PTHR30173:SF24 25 193 3.7E-44 T 23-04-2016 NIDE_RS19360 1b682d5acfb9d1437d67d7234f674c5f 210 Pfam PF08281 Sigma-70, region 4 135 186 3.9E-17 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS19360 1b682d5acfb9d1437d67d7234f674c5f 210 Gene3D G3DSA:1.10.1740.10 24 111 2.7E-26 T 23-04-2016 NIDE_RS19360 1b682d5acfb9d1437d67d7234f674c5f 210 Pfam PF04542 Sigma-70 region 2 28 94 8.4E-18 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 SUPERFAMILY SSF55973 109 229 6.28E-50 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 380 55.5 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 256 264 - T 23-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 3.3E-41 T 23-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 112 122 - T 23-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 PANTHER PTHR11964 1 375 2.4E-247 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 SUPERFAMILY SSF55973 4 110 2.63E-45 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 378 2.6E-176 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 PIRSF PIRSF000497 1 381 2.9E-172 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 SUPERFAMILY SSF55973 230 380 1.31E-66 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 230 369 1.0E-66 T 23-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 Pfam PF02772 S-adenosylmethionine synthetase, central domain 112 228 2.4E-48 T 23-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 Gene3D G3DSA:3.30.300.10 132 230 7.5E-45 T 23-04-2016 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 Gene3D G3DSA:3.30.300.10 12 131 2.1E-43 T 23-04-2016 NIDE_RS03885 fcb34bdb09b3f909779370dd8326613f 382 Gene3D G3DSA:3.30.300.10 241 380 1.0E-66 T 23-04-2016 NIDE_RS14730 ffa3ed0b788c2c196a92c4abf04bdcc7 420 Gene3D G3DSA:1.10.710.10 50 218 3.3E-15 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 NIDE_RS14730 ffa3ed0b788c2c196a92c4abf04bdcc7 420 Pfam PF13435 Cytochrome c554 and c-prime 53 107 4.9E-4 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 NIDE_RS14730 ffa3ed0b788c2c196a92c4abf04bdcc7 420 SUPERFAMILY SSF48695 29 216 1.65E-21 T 23-04-2016 IPR011031 Multihaem cytochrome NIDE_RS08350 569197712640ab5e3a81b2962651b8b2 309 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 305 9.5E-131 T 23-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 NIDE_RS08350 569197712640ab5e3a81b2962651b8b2 309 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 295 1.3E-74 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIDE_RS08350 569197712640ab5e3a81b2962651b8b2 309 SUPERFAMILY SSF53686 4 303 6.29E-107 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIDE_RS08350 569197712640ab5e3a81b2962651b8b2 309 Gene3D G3DSA:3.40.50.1100 40 137 9.0E-40 T 23-04-2016 NIDE_RS08350 569197712640ab5e3a81b2962651b8b2 309 Gene3D G3DSA:3.40.50.1100 138 302 1.7E-78 T 23-04-2016 NIDE_RS08350 569197712640ab5e3a81b2962651b8b2 309 PANTHER PTHR10314:SF110 8 309 1.3E-148 T 23-04-2016 NIDE_RS08350 569197712640ab5e3a81b2962651b8b2 309 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 304 3.3E-137 T 23-04-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 NIDE_RS08350 569197712640ab5e3a81b2962651b8b2 309 PANTHER PTHR10314 8 309 1.3E-148 T 23-04-2016 NIDE_RS12240 cf7fdcf565e346f2072b17e1fc4d439b 199 Gene3D G3DSA:3.40.50.300 4 199 8.5E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12240 cf7fdcf565e346f2072b17e1fc4d439b 199 SUPERFAMILY SSF52540 9 199 1.6E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12240 cf7fdcf565e346f2072b17e1fc4d439b 199 PANTHER PTHR30069 1 199 3.3E-63 T 23-04-2016 NIDE_RS12240 cf7fdcf565e346f2072b17e1fc4d439b 199 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 25 199 1.8E-72 T 23-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 NIDE_RS12240 cf7fdcf565e346f2072b17e1fc4d439b 199 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 28 199 8.2E-65 T 23-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 NIDE_RS12240 cf7fdcf565e346f2072b17e1fc4d439b 199 PIRSF PIRSF015617 2 199 4.1E-75 T 23-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 SUPERFAMILY SSF46767 277 358 4.71E-31 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 PIRSF PIRSF000409 5 362 6.4E-139 T 23-04-2016 IPR016221 Bifunctional regulatory protein Ada NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 279 358 6.1E-33 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 Gene3D G3DSA:1.10.10.60 155 189 1.6E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 Gene3D G3DSA:3.30.160.70 190 276 5.6E-35 T 23-04-2016 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 SMART SM00342 108 190 1.4E-12 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 SUPERFAMILY SSF57884 14 99 2.75E-33 T 23-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 PANTHER PTHR10815:SF9 166 357 2.3E-107 T 23-04-2016 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 Pfam PF02805 Metal binding domain of Ada 20 83 1.5E-32 T 23-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 278 357 1.2E-34 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 Gene3D G3DSA:1.10.10.60 94 146 2.7E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 SUPERFAMILY SSF53155 198 276 2.35E-21 T 23-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 328 334 - T 23-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 SUPERFAMILY SSF46689 94 140 3.49E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 Pfam PF12833 Helix-turn-helix domain 114 191 2.4E-18 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 PANTHER PTHR10815 166 357 2.3E-107 T 23-04-2016 NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 Gene3D G3DSA:1.10.10.10 277 358 2.8E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16195 31fd18793f27f1db6006105c20330cf1 362 Gene3D G3DSA:3.40.10.10 15 93 8.6E-34 T 23-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 Gene3D G3DSA:3.40.50.261 491 618 2.5E-12 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 SUPERFAMILY SSF51735 202 339 6.72E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 SUPERFAMILY SSF52210 499 661 3.27E-29 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 Gene3D G3DSA:3.40.50.261 332 490 6.6E-37 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 Pfam PF13549 ATP-grasp domain 687 907 7.3E-75 T 23-04-2016 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 Gene3D G3DSA:3.30.470.20 699 803 6.6E-9 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 Pfam PF13380 CoA binding domain 213 337 3.3E-20 T 23-04-2016 IPR003781 CoA-binding GO:0048037 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 PANTHER PTHR11117 187 911 1.1E-223 T 23-04-2016 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 356 491 1.2E-54 T 23-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 SMART SM00881 208 303 1.3E-32 T 23-04-2016 IPR003781 CoA-binding GO:0048037 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 SUPERFAMILY SSF56059 697 910 2.3E-41 T 23-04-2016 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 PANTHER PTHR11117:SF8 187 911 1.1E-223 T 23-04-2016 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 SUPERFAMILY SSF55729 29 166 3.84E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 SUPERFAMILY SSF52210 332 500 2.49E-44 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 Pfam PF00583 Acetyltransferase (GNAT) family 97 165 3.5E-7 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 Gene3D G3DSA:3.40.50.720 199 331 1.2E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS17620 2f135ae66e9e0367fc698eac5ca9fceb 911 Gene3D G3DSA:3.40.630.30 24 165 1.6E-14 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS01835 688228c5149c9c680822b5ff0bfb524e 572 SUPERFAMILY SSF55681 358 569 1.47E-32 T 23-04-2016 NIDE_RS01835 688228c5149c9c680822b5ff0bfb524e 572 Pfam PF03484 tRNA synthetase B5 domain 296 360 2.2E-11 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 NIDE_RS01835 688228c5149c9c680822b5ff0bfb524e 572 TIGRFAM TIGR00471 pheT_arch: phenylalanine--tRNA ligase, beta subunit 1 569 1.6E-138 T 23-04-2016 IPR004531 Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 NIDE_RS01835 688228c5149c9c680822b5ff0bfb524e 572 SMART SM00873 106 266 1.4E-4 T 23-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 NIDE_RS01835 688228c5149c9c680822b5ff0bfb524e 572 SUPERFAMILY SSF46955 296 363 3.66E-11 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS01835 688228c5149c9c680822b5ff0bfb524e 572 SMART SM00874 292 360 1.4E-9 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 NIDE_RS01835 688228c5149c9c680822b5ff0bfb524e 572 Gene3D G3DSA:3.30.56.20 296 363 2.9E-14 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 NIDE_RS01835 688228c5149c9c680822b5ff0bfb524e 572 PANTHER PTHR10947 59 569 1.8E-103 T 23-04-2016 NIDE_RS01835 688228c5149c9c680822b5ff0bfb524e 572 Gene3D G3DSA:3.30.930.10 376 570 7.9E-39 T 23-04-2016 NIDE_RS11125 0692d4c004b84d39a9cf29e8a65005c4 234 SUPERFAMILY SSF46894 143 227 3.4E-7 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS11125 0692d4c004b84d39a9cf29e8a65005c4 234 PANTHER PTHR26402 4 227 4.6E-49 T 23-04-2016 NIDE_RS11125 0692d4c004b84d39a9cf29e8a65005c4 234 Pfam PF00072 Response regulator receiver domain 6 117 1.2E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS11125 0692d4c004b84d39a9cf29e8a65005c4 234 SUPERFAMILY SSF52172 6 129 6.4E-38 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS11125 0692d4c004b84d39a9cf29e8a65005c4 234 Gene3D G3DSA:1.10.10.10 149 227 1.1E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS11125 0692d4c004b84d39a9cf29e8a65005c4 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 227 4.1E-8 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS11125 0692d4c004b84d39a9cf29e8a65005c4 234 SMART SM00448 4 117 1.0E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS11125 0692d4c004b84d39a9cf29e8a65005c4 234 SMART SM00862 153 227 0.0057 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS11125 0692d4c004b84d39a9cf29e8a65005c4 234 PANTHER PTHR26402:SF531 4 227 4.6E-49 T 23-04-2016 NIDE_RS11125 0692d4c004b84d39a9cf29e8a65005c4 234 Gene3D G3DSA:3.40.50.2300 6 129 1.4E-36 T 23-04-2016 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 PANTHER PTHR11587 2 405 2.0E-242 T 23-04-2016 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 SUPERFAMILY SSF52402 7 207 7.5E-53 T 23-04-2016 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 12 20 - T 23-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 Hamap MF_00005 Argininosuccinate synthase [argG]. 6 401 53.591 T 23-04-2016 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 SUPERFAMILY SSF69864 176 401 1.96E-93 T 23-04-2016 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 Gene3D G3DSA:3.90.1260.10 164 359 4.0E-95 T 23-04-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 Gene3D G3DSA:1.20.5.470 370 400 4.9E-6 T 23-04-2016 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 PANTHER PTHR11587:SF2 2 405 2.0E-242 T 23-04-2016 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 TIGRFAM TIGR00032 argG: argininosuccinate synthase 8 400 4.1E-151 T 23-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 Pfam PF00764 Arginosuccinate synthase 10 394 6.8E-162 T 23-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 Gene3D G3DSA:3.40.50.620 7 163 6.8E-68 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS02225 17cc782d97e5af6adb2a06d3bcfdc453 405 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 120 131 - T 23-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PANTHER PTHR22912:SF20 1 462 7.9E-120 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 47 57 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 SUPERFAMILY SSF55424 352 462 9.11E-33 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 Gene3D G3DSA:3.50.50.60 13 143 1.3E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 Gene3D G3DSA:3.50.50.60 144 335 8.3E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PANTHER PTHR22912 1 462 7.9E-120 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PIRSF PIRSF000350 2 454 1.3E-86 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 328 4.3E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 Gene3D G3DSA:3.30.390.30 345 461 1.9E-33 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 6.0E-31 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 15 34 6.0E-31 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 6.0E-31 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 281 6.0E-31 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 6.0E-31 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 SUPERFAMILY SSF51905 9 371 9.72E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 352 456 3.8E-26 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 2.0E-57 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 2.0E-57 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 46 61 2.0E-57 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 14 36 2.0E-57 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 426 2.0E-57 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 280 2.0E-57 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 346 367 2.0E-57 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 453 2.0E-57 T 23-04-2016 NIDE_RS19800 e19847683de25a8b60194d1b32030103 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 2.0E-57 T 23-04-2016 NIDE_RS01605 bb9894035d3cd8eaccd87b5b51186df3 234 PANTHER PTHR24220 3 221 1.9E-94 T 23-04-2016 NIDE_RS01605 bb9894035d3cd8eaccd87b5b51186df3 234 Gene3D G3DSA:3.40.50.300 1 219 2.6E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01605 bb9894035d3cd8eaccd87b5b51186df3 234 Pfam PF00005 ABC transporter 21 167 4.3E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS01605 bb9894035d3cd8eaccd87b5b51186df3 234 PANTHER PTHR24220:SF86 3 221 1.9E-94 T 23-04-2016 NIDE_RS01605 bb9894035d3cd8eaccd87b5b51186df3 234 SMART SM00382 30 215 4.1E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS01605 bb9894035d3cd8eaccd87b5b51186df3 234 SUPERFAMILY SSF52540 1 220 1.77E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01605 bb9894035d3cd8eaccd87b5b51186df3 234 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 Pfam PF04542 Sigma-70 region 2 17 83 1.4E-7 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 Gene3D G3DSA:1.10.1740.10 11 83 1.1E-8 T 23-04-2016 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 PANTHER PTHR30173 1 387 2.2E-201 T 23-04-2016 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 Pfam PF08281 Sigma-70, region 4 117 168 3.1E-8 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 PANTHER PTHR30173:SF7 1 387 2.2E-201 T 23-04-2016 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 SUPERFAMILY SSF88659 109 171 3.55E-10 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 Gene3D G3DSA:1.25.40.10 366 405 9.6E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 SUPERFAMILY SSF48452 24 56 3.34E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 SUPERFAMILY SSF48452 323 412 3.34E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 SUPERFAMILY SSF88946 11 100 4.32E-10 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS15955 252b6de5692249253adc5515ec406d6b 416 Gene3D G3DSA:1.10.10.10 110 171 2.0E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS09295 d00b095337d40d628908b6da873c33c7 437 Gene3D G3DSA:3.30.465.10 317 412 3.2E-21 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 NIDE_RS09295 d00b095337d40d628908b6da873c33c7 437 SUPERFAMILY SSF56176 333 412 1.12E-16 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 NIDE_RS09295 d00b095337d40d628908b6da873c33c7 437 Gene3D G3DSA:3.10.580.10 189 316 9.3E-17 T 23-04-2016 NIDE_RS09295 d00b095337d40d628908b6da873c33c7 437 Pfam PF01595 Domain of unknown function DUF21 4 187 8.6E-39 T 23-04-2016 IPR002550 Domain of unknown function DUF21 NIDE_RS09295 d00b095337d40d628908b6da873c33c7 437 SUPERFAMILY SSF54631 197 340 1.11E-28 T 23-04-2016 NIDE_RS09295 d00b095337d40d628908b6da873c33c7 437 Pfam PF03471 Transporter associated domain 338 413 9.0E-17 T 23-04-2016 IPR005170 Transporter-associated domain NIDE_RS09295 d00b095337d40d628908b6da873c33c7 437 Pfam PF00571 CBS domain 274 322 9.1E-5 T 23-04-2016 IPR000644 CBS domain NIDE_RS09295 d00b095337d40d628908b6da873c33c7 437 PANTHER PTHR22777 1 417 1.6E-126 T 23-04-2016 NIDE_RS09295 d00b095337d40d628908b6da873c33c7 437 SMART SM01091 337 414 2.1E-21 T 23-04-2016 IPR005170 Transporter-associated domain NIDE_RS00570 c3811e1b805aa778d3a5077d82b3614a 198 Gene3D G3DSA:3.90.550.10 27 180 1.3E-14 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS00570 c3811e1b805aa778d3a5077d82b3614a 198 SUPERFAMILY SSF53448 22 186 2.04E-19 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS00640 70c77c6e8b43f5e564374a072a1359a6 113 PANTHER PTHR33755 7 106 2.6E-13 T 23-04-2016 NIDE_RS00640 70c77c6e8b43f5e564374a072a1359a6 113 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 10 101 1.4E-15 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NIDE_RS00640 70c77c6e8b43f5e564374a072a1359a6 113 SUPERFAMILY SSF143011 8 101 4.12E-7 T 23-04-2016 NIDE_RS11075 73fe1883c269d7148996fded388311bc 222 Pfam PF01895 PhoU domain 120 203 1.9E-19 T 23-04-2016 IPR026022 PhoU domain NIDE_RS11075 73fe1883c269d7148996fded388311bc 222 Pfam PF01895 PhoU domain 16 104 8.2E-23 T 23-04-2016 IPR026022 PhoU domain NIDE_RS11075 73fe1883c269d7148996fded388311bc 222 SUPERFAMILY SSF109755 3 217 4.71E-77 T 23-04-2016 NIDE_RS11075 73fe1883c269d7148996fded388311bc 222 PANTHER PTHR10010 1 215 3.4E-81 T 23-04-2016 NIDE_RS11075 73fe1883c269d7148996fded388311bc 222 Gene3D G3DSA:1.20.58.220 1 111 1.1E-37 T 23-04-2016 NIDE_RS11075 73fe1883c269d7148996fded388311bc 222 PANTHER PTHR10010:SF14 1 215 3.4E-81 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 NIDE_RS11075 73fe1883c269d7148996fded388311bc 222 Gene3D G3DSA:1.20.58.220 118 217 4.5E-31 T 23-04-2016 NIDE_RS11075 73fe1883c269d7148996fded388311bc 222 PIRSF PIRSF003107 1 217 2.4E-73 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 NIDE_RS11075 73fe1883c269d7148996fded388311bc 222 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 4 213 8.8E-74 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 NIDE_RS05805 0106ebf53515b48c5572fc7f11decc39 753 PANTHER PTHR32438 639 753 1.3E-157 T 23-04-2016 NIDE_RS05805 0106ebf53515b48c5572fc7f11decc39 753 PANTHER PTHR32438 181 620 1.3E-157 T 23-04-2016 NIDE_RS05805 0106ebf53515b48c5572fc7f11decc39 753 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 146 739 1.0E-140 T 23-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NIDE_RS05805 0106ebf53515b48c5572fc7f11decc39 753 Gene3D G3DSA:3.20.20.80 672 739 2.3E-153 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 NIDE_RS05805 0106ebf53515b48c5572fc7f11decc39 753 Gene3D G3DSA:3.20.20.80 188 632 2.3E-153 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 NIDE_RS05805 0106ebf53515b48c5572fc7f11decc39 753 SUPERFAMILY SSF51445 189 629 4.29E-139 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS05805 0106ebf53515b48c5572fc7f11decc39 753 SUPERFAMILY SSF51445 668 739 4.29E-139 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS05805 0106ebf53515b48c5572fc7f11decc39 753 PANTHER PTHR32438:SF5 639 753 1.3E-157 T 23-04-2016 NIDE_RS05805 0106ebf53515b48c5572fc7f11decc39 753 PANTHER PTHR32438:SF5 181 620 1.3E-157 T 23-04-2016 NIDE_RS05805 0106ebf53515b48c5572fc7f11decc39 753 Pfam PF02446 4-alpha-glucanotransferase 195 725 1.1E-122 T 23-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 16 459 46.77 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 SUPERFAMILY SSF53271 251 464 4.28E-70 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 PANTHER PTHR11907 14 471 2.6E-241 T 23-04-2016 NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 PIRSF PIRSF000485 13 469 2.1E-176 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 Pfam PF13537 Glutamine amidotransferase domain 99 213 1.5E-20 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 PANTHER PTHR11907:SF0 14 471 2.6E-241 T 23-04-2016 NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 SUPERFAMILY SSF56235 17 257 1.72E-70 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 Gene3D G3DSA:3.60.20.10 17 258 6.7E-67 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 Pfam PF00156 Phosphoribosyl transferase domain 282 386 3.5E-7 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 Gene3D G3DSA:3.40.50.2020 273 440 4.9E-47 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS06460 63342eefa76194b498a3ae387c072940 476 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 17 458 6.1E-168 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 NIDE_RS10940 3dc742706ac7a827cd31655f761370c7 83 SUPERFAMILY SSF143120 1 79 2.22E-24 T 23-04-2016 NIDE_RS10940 3dc742706ac7a827cd31655f761370c7 83 Gene3D G3DSA:3.40.1620.10 2 51 8.1E-11 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS10940 3dc742706ac7a827cd31655f761370c7 83 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 56 7.2E-13 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS10940 3dc742706ac7a827cd31655f761370c7 83 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 74 1.5E-22 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS10940 3dc742706ac7a827cd31655f761370c7 83 PANTHER PTHR33713 1 81 8.1E-27 T 23-04-2016 NIDE_RS10940 3dc742706ac7a827cd31655f761370c7 83 PANTHER PTHR33713:SF6 1 81 8.1E-27 T 23-04-2016 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 208 1.6E-72 T 23-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 Pfam PF01479 S4 domain 99 145 3.0E-16 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 97 2.1E-25 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 SUPERFAMILY SSF55174 4 208 1.96E-67 T 23-04-2016 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 PANTHER PTHR11831 1 208 6.3E-79 T 23-04-2016 IPR022801 Ribosomal protein S4/S9 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 ProSitePatterns PS00632 Ribosomal protein S4 signature. 96 120 - T 23-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 SMART SM00363 98 158 1.3E-16 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 Gene3D G3DSA:1.10.1050.10 2 101 2.3E-41 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 SMART SM01390 3 97 3.8E-50 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 PANTHER PTHR11831:SF4 1 208 6.3E-79 T 23-04-2016 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 Gene3D G3DSA:3.10.290.10 102 200 9.1E-28 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS06195 01b2c63121ed4d3cfa8e691c0eafdea3 208 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 208 34.947 T 23-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 NIDE_RS20305 7617e68bb9f98865aa4b9819bda1eecd 228 SMART SM00900 116 197 4.3E-5 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 NIDE_RS20305 7617e68bb9f98865aa4b9819bda1eecd 228 Pfam PF04205 FMN-binding domain 119 194 7.8E-8 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 NIDE_RS17810 5cd4074495ede5ddbe63f6e158c5dffe 373 PANTHER PTHR30188:SF3 35 367 2.1E-114 T 23-04-2016 NIDE_RS17810 5cd4074495ede5ddbe63f6e158c5dffe 373 Gene3D G3DSA:3.30.750.24 17 95 2.1E-6 T 23-04-2016 IPR002645 STAS domain NIDE_RS17810 5cd4074495ede5ddbe63f6e158c5dffe 373 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 130 368 6.5E-79 T 23-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria NIDE_RS17810 5cd4074495ede5ddbe63f6e158c5dffe 373 PANTHER PTHR30188 35 367 2.1E-114 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 NIDE_RS17810 5cd4074495ede5ddbe63f6e158c5dffe 373 Pfam PF02405 Permease MlaE 159 366 4.6E-74 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 NIDE_RS17810 5cd4074495ede5ddbe63f6e158c5dffe 373 SUPERFAMILY SSF52091 17 95 7.26E-8 T 23-04-2016 IPR002645 STAS domain NIDE_RS17810 5cd4074495ede5ddbe63f6e158c5dffe 373 Pfam PF13466 STAS domain 19 95 1.2E-11 T 23-04-2016 IPR002645 STAS domain NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 PANTHER PTHR11712 1 891 0.0 T 23-04-2016 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 395 510 2.4E-20 T 23-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Pfam PF00550 Phosphopantetheine attachment site 1425 1487 8.2E-12 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1447 1462 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SUPERFAMILY SSF52151 540 670 1.46E-72 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SUPERFAMILY SSF52151 730 833 1.46E-72 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SMART SM00823 Phosphopantetheine attachment site 1423 1492 0.0098 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SUPERFAMILY SSF47336 1420 1488 6.67E-16 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Gene3D G3DSA:3.40.50.720 1149 1323 3.0E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 179 195 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 18 266 6.4E-74 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1151 1330 1.6E-49 T 23-04-2016 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 543 838 3.8E-108 T 23-04-2016 IPR020801 Polyketide synthase, acyl transferase domain NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Pfam PF08659 KR domain 1151 1328 1.3E-48 T 23-04-2016 IPR013968 Polyketide synthase, ketoreductase domain NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Gene3D G3DSA:3.40.366.10 535 664 3.8E-80 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Gene3D G3DSA:3.40.366.10 728 835 3.8E-80 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SUPERFAMILY SSF51735 905 1134 5.9E-17 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SUPERFAMILY SSF55048 668 728 3.01E-10 T 23-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Gene3D G3DSA:3.40.47.10 19 278 4.8E-81 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 274 392 1.5E-40 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 PANTHER PTHR11712:SF288 1 891 0.0 T 23-04-2016 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Gene3D G3DSA:3.40.47.10 279 445 7.1E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SUPERFAMILY SSF51735 1146 1336 2.33E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Pfam PF00698 Acyl transferase domain 542 821 6.5E-51 T 23-04-2016 IPR014043 Acyl transferase NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Gene3D G3DSA:1.10.1200.10 1420 1493 8.8E-21 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 Gene3D G3DSA:3.30.70.250 668 727 2.6E-8 T 23-04-2016 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SUPERFAMILY SSF53901 162 388 1.6E-82 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SUPERFAMILY SSF53901 420 441 1.6E-82 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SUPERFAMILY SSF53901 16 133 1.6E-82 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS09845 69cbc296a187207e213c67c0ee18d558 1517 SMART SM00825 Beta-ketoacyl synthase 19 445 5.1E-187 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 379 29.442 T 23-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 339 3.3E-126 T 23-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 SUPERFAMILY SSF54814 278 342 1.18E-15 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 Gene3D G3DSA:3.30.1480.10 1 123 4.9E-44 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 SMART SM00322 300 373 0.025 T 23-04-2016 IPR004087 K Homology domain GO:0003676 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 SMART SM00322 229 292 31.0 T 23-04-2016 IPR004087 K Homology domain GO:0003676 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 Gene3D G3DSA:3.30.300.20 198 276 2.3E-35 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 SUPERFAMILY SSF54814 199 276 1.18E-29 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 Pfam PF08529 NusA N-terminal domain 4 122 4.6E-37 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 SUPERFAMILY SSF69705 1 125 7.72E-39 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 Gene3D G3DSA:3.30.300.20 277 346 1.5E-31 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 PANTHER PTHR22648:SF0 1 377 3.0E-150 T 23-04-2016 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 Gene3D G3DSA:2.40.50.140 128 197 7.9E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 SUPERFAMILY SSF50249 132 198 1.89E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 Pfam PF00575 S1 RNA binding domain 134 192 9.8E-6 T 23-04-2016 IPR003029 S1 domain GO:0003676 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 SMART SM00316 133 199 1.3E-7 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 Pfam PF13184 NusA-like KH domain 229 296 1.7E-28 T 23-04-2016 IPR025249 KH domain, NusA-like GO:0003723 NIDE_RS18850 89bb62f63eae5767b4acd1cbc1912ccf 379 PANTHER PTHR22648 1 377 3.0E-150 T 23-04-2016 NIDE_RS09990 356f09ac8b0572bf9fcc4fcf7d9074a0 858 Gene3D G3DSA:2.170.130.10 170 296 3.6E-35 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS09990 356f09ac8b0572bf9fcc4fcf7d9074a0 858 SMART SM00965 78 129 4.6E-11 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 NIDE_RS09990 356f09ac8b0572bf9fcc4fcf7d9074a0 858 Pfam PF07715 TonB-dependent Receptor Plug Domain 190 290 6.9E-21 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS09990 356f09ac8b0572bf9fcc4fcf7d9074a0 858 Gene3D G3DSA:2.40.170.20 304 857 2.3E-134 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS09990 356f09ac8b0572bf9fcc4fcf7d9074a0 858 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 191 857 8.8E-100 T 23-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 NIDE_RS09990 356f09ac8b0572bf9fcc4fcf7d9074a0 858 SUPERFAMILY SSF56935 153 857 1.01E-122 T 23-04-2016 NIDE_RS09990 356f09ac8b0572bf9fcc4fcf7d9074a0 858 Pfam PF07660 Secretin and TonB N terminus short domain 79 128 2.8E-7 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 NIDE_RS09990 356f09ac8b0572bf9fcc4fcf7d9074a0 858 Pfam PF00593 TonB dependent receptor 606 833 1.5E-26 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS09990 356f09ac8b0572bf9fcc4fcf7d9074a0 858 PANTHER PTHR32552:SF10 101 857 4.7E-200 T 23-04-2016 NIDE_RS09990 356f09ac8b0572bf9fcc4fcf7d9074a0 858 PANTHER PTHR32552 101 857 4.7E-200 T 23-04-2016 NIDE_RS08365 fadd0ed159e03b61fc9274be89059bd4 181 PANTHER PTHR21248 31 170 1.9E-27 T 23-04-2016 NIDE_RS08365 fadd0ed159e03b61fc9274be89059bd4 181 SUPERFAMILY SSF56024 32 174 2.47E-29 T 23-04-2016 NIDE_RS08365 fadd0ed159e03b61fc9274be89059bd4 181 Gene3D G3DSA:3.30.870.10 38 174 2.4E-29 T 23-04-2016 NIDE_RS08365 fadd0ed159e03b61fc9274be89059bd4 181 Pfam PF13091 PLD-like domain 51 170 4.5E-24 T 23-04-2016 IPR025202 Phospholipase D-like domain NIDE_RS02600 21c6a99b63be5a94062057cfe577e9e2 467 Pfam PF04055 Radical SAM superfamily 54 192 6.0E-21 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS02600 21c6a99b63be5a94062057cfe577e9e2 467 Gene3D G3DSA:3.20.20.70 47 371 4.2E-78 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS02600 21c6a99b63be5a94062057cfe577e9e2 467 PANTHER PTHR11228:SF32 44 390 3.5E-92 T 23-04-2016 NIDE_RS02600 21c6a99b63be5a94062057cfe577e9e2 467 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 404 448 1.1E-11 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS02600 21c6a99b63be5a94062057cfe577e9e2 467 PANTHER PTHR11228 44 390 3.5E-92 T 23-04-2016 NIDE_RS02600 21c6a99b63be5a94062057cfe577e9e2 467 Pfam PF13353 4Fe-4S single cluster domain 55 144 1.1E-7 T 23-04-2016 NIDE_RS02600 21c6a99b63be5a94062057cfe577e9e2 467 Pfam PF13186 Iron-sulfur cluster-binding domain 295 354 8.2E-9 T 23-04-2016 IPR023885 4Fe4S-binding SPASM domain NIDE_RS02600 21c6a99b63be5a94062057cfe577e9e2 467 SMART SM00729 49 250 8.2E-4 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS02600 21c6a99b63be5a94062057cfe577e9e2 467 SUPERFAMILY SSF102114 47 361 1.83E-71 T 23-04-2016 NIDE_RS02600 21c6a99b63be5a94062057cfe577e9e2 467 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 295 378 3.8E-12 T 23-04-2016 IPR023885 4Fe4S-binding SPASM domain NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 PIRSF PIRSF004491 1 311 5.0E-97 T 23-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 Gene3D G3DSA:2.40.30.30 179 308 1.8E-35 T 23-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 PANTHER PTHR22749:SF0 1 307 3.2E-101 T 23-04-2016 NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 Pfam PF06574 FAD synthetase 15 166 1.8E-45 T 23-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 SUPERFAMILY SSF52374 16 174 2.01E-28 T 23-04-2016 NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 Gene3D G3DSA:3.40.50.620 8 178 2.2E-57 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 305 2.9E-69 T 23-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 Pfam PF01687 Riboflavin kinase 183 305 9.7E-32 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 SUPERFAMILY SSF82114 173 307 7.63E-38 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 SMART SM00904 182 306 1.6E-48 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 NIDE_RS12570 6aa56b9aa656a7f14b713bcc91ef132f 321 PANTHER PTHR22749 1 307 3.2E-101 T 23-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 Pfam PF00512 His Kinase A (phospho-acceptor) domain 521 582 1.4E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 704 714 1.6E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 744 757 1.6E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 720 738 1.6E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 686 700 1.6E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 390 512 7.6E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 Gene3D G3DSA:1.10.287.130 517 582 2.5E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 634 759 4.0E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 Pfam PF00672 HAMP domain 297 369 3.8E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 SUPERFAMILY SSF47384 516 584 4.9E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 SMART SM00091 393 459 2.8E-5 T 23-04-2016 IPR000014 PAS domain NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 SMART SM00388 521 588 2.7E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 SUPERFAMILY SSF55785 380 504 1.05E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 PANTHER PTHR24423 391 665 5.1E-75 T 23-04-2016 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 PANTHER PTHR24423 686 762 5.1E-75 T 23-04-2016 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 SMART SM00387 634 760 7.4E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 SUPERFAMILY SSF55874 577 760 4.71E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 Gene3D G3DSA:3.30.450.20 385 506 6.4E-14 T 23-04-2016 NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 Gene3D G3DSA:3.30.565.10 591 762 2.9E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05120 5b200e16de4580367c70b6881298387c 768 Pfam PF08448 PAS fold 400 507 3.5E-9 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS17610 a8061e2f05af403cb829c0ca92a26af8 120 Gene3D G3DSA:1.10.760.10 5 113 9.2E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17610 a8061e2f05af403cb829c0ca92a26af8 120 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 28 110 2.1E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17610 a8061e2f05af403cb829c0ca92a26af8 120 SUPERFAMILY SSF46626 7 115 8.47E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 411 52.55 T 23-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 SMART SM01086 313 408 8.4E-31 T 23-04-2016 IPR019489 Clp ATPase, C-terminal NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 Pfam PF06689 ClpX C4-type zinc finger 11 48 1.5E-20 T 23-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 SUPERFAMILY SSF57716 11 46 4.28E-11 T 23-04-2016 NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 Gene3D G3DSA:1.10.8.60 312 408 7.8E-36 T 23-04-2016 NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 313 391 4.9E-17 T 23-04-2016 IPR019489 Clp ATPase, C-terminal NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 7 405 7.7E-199 T 23-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 SMART SM00382 109 281 3.4E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 Gene3D G3DSA:3.40.50.300 290 307 1.7E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 Gene3D G3DSA:3.40.50.300 63 251 1.7E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 PANTHER PTHR11262 6 414 9.2E-244 T 23-04-2016 NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 SUPERFAMILY SSF52540 59 398 8.68E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 Pfam PF07724 AAA domain (Cdc48 subfamily) 109 306 7.2E-50 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS01195 fd87ee06fd9ec404348439da2029c2dd 418 SMART SM00994 10 49 4.8E-23 T 23-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 NIDE_RS10980 aa17798c9dd4650d3d4ddfc6f694775c 261 PANTHER PTHR12526 12 258 1.2E-52 T 23-04-2016 NIDE_RS10980 aa17798c9dd4650d3d4ddfc6f694775c 261 SUPERFAMILY SSF53756 13 256 2.83E-62 T 23-04-2016 NIDE_RS10980 aa17798c9dd4650d3d4ddfc6f694775c 261 Gene3D G3DSA:3.40.50.2000 49 232 4.8E-24 T 23-04-2016 NIDE_RS10980 aa17798c9dd4650d3d4ddfc6f694775c 261 Pfam PF00534 Glycosyl transferases group 1 74 231 2.8E-31 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS01030 bac41e10808f4cbc7b28faad87daa75f 551 Pfam PF00361 Proton-conducting membrane transporter 180 448 3.1E-53 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS01030 bac41e10808f4cbc7b28faad87daa75f 551 PANTHER PTHR22773 1 160 2.9E-122 T 23-04-2016 NIDE_RS01030 bac41e10808f4cbc7b28faad87daa75f 551 PANTHER PTHR22773 189 497 2.9E-122 T 23-04-2016 NIDE_RS01030 bac41e10808f4cbc7b28faad87daa75f 551 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 405 431 4.1E-26 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS01030 bac41e10808f4cbc7b28faad87daa75f 551 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 353 372 4.1E-26 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS01030 bac41e10808f4cbc7b28faad87daa75f 551 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 135 154 4.1E-26 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS01030 bac41e10808f4cbc7b28faad87daa75f 551 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 265 289 4.1E-26 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS01030 bac41e10808f4cbc7b28faad87daa75f 551 PANTHER PTHR22773:SF40 1 160 2.9E-122 T 23-04-2016 NIDE_RS01030 bac41e10808f4cbc7b28faad87daa75f 551 PANTHER PTHR22773:SF40 189 497 2.9E-122 T 23-04-2016 NIDE_RS01030 bac41e10808f4cbc7b28faad87daa75f 551 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 8 513 5.8E-123 T 23-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 NIDE_RS01290 9bc7c072c37b008d12c29e713c9f593b 107 SUPERFAMILY SSF82607 12 106 2.35E-32 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family NIDE_RS01290 9bc7c072c37b008d12c29e713c9f593b 107 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 6 100 21.966 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family NIDE_RS01290 9bc7c072c37b008d12c29e713c9f593b 107 Gene3D G3DSA:3.30.1310.10 6 107 8.8E-40 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family NIDE_RS01290 9bc7c072c37b008d12c29e713c9f593b 107 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 5 106 1.7E-27 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family NIDE_RS01290 9bc7c072c37b008d12c29e713c9f593b 107 PIRSF PIRSF004555 4 107 2.5E-38 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family NIDE_RS01290 9bc7c072c37b008d12c29e713c9f593b 107 Pfam PF02575 YbaB/EbfC DNA-binding family 12 101 1.5E-32 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family NIDE_RS01290 9bc7c072c37b008d12c29e713c9f593b 107 PANTHER PTHR33449 6 107 1.4E-42 T 23-04-2016 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 Pfam PF02803 Thiolase, C-terminal domain 274 395 5.2E-46 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 394 1.2E-137 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 SUPERFAMILY SSF53901 274 395 2.08E-41 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 Gene3D G3DSA:3.40.47.10 280 395 1.2E-64 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 Gene3D G3DSA:3.40.47.10 143 192 1.2E-64 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 PANTHER PTHR18919 1 396 7.9E-177 T 23-04-2016 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 ProSitePatterns PS00099 Thiolases active site. 377 390 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 Pfam PF00108 Thiolase, N-terminal domain 4 265 1.3E-80 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 SUPERFAMILY SSF53901 3 272 4.01E-77 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 ProSitePatterns PS00737 Thiolases signature 2. 342 358 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 PIRSF PIRSF000429 1 396 4.4E-132 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 Gene3D G3DSA:3.40.47.10 3 123 2.6E-62 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14230 905363f64debdf34670dc5bc35755544 396 Gene3D G3DSA:3.40.47.10 193 279 2.6E-62 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14005 ba9375ffa104d94fbbb062e27159257e 274 PANTHER PTHR11599:SF58 9 270 2.7E-75 T 23-04-2016 NIDE_RS14005 ba9375ffa104d94fbbb062e27159257e 274 Pfam PF00227 Proteasome subunit 54 232 1.9E-34 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 NIDE_RS14005 ba9375ffa104d94fbbb062e27159257e 274 SUPERFAMILY SSF56235 25 264 8.75E-50 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS14005 ba9375ffa104d94fbbb062e27159257e 274 TIGRFAM TIGR03690 20S_bact_beta: proteasome, beta subunit 52 271 1.7E-89 T 23-04-2016 IPR022483 Peptidase T1A, proteasome beta-subunit, actinobacteria GO:0004298|GO:0005839|GO:0010498 UniPathway: UPA00997 NIDE_RS14005 ba9375ffa104d94fbbb062e27159257e 274 PANTHER PTHR11599 9 270 2.7E-75 T 23-04-2016 NIDE_RS14005 ba9375ffa104d94fbbb062e27159257e 274 Gene3D G3DSA:3.60.20.10 56 261 2.2E-47 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS17710 1e229dc02af39aec85df9daaed1bd278 144 PANTHER PTHR39624 12 142 4.1E-29 T 23-04-2016 NIDE_RS17710 1e229dc02af39aec85df9daaed1bd278 144 Pfam PF02566 OsmC-like protein 32 118 7.6E-12 T 23-04-2016 IPR003718 OsmC/Ohr family NIDE_RS17710 1e229dc02af39aec85df9daaed1bd278 144 SUPERFAMILY SSF82784 1 127 1.14E-26 T 23-04-2016 IPR003718 OsmC/Ohr family NIDE_RS17710 1e229dc02af39aec85df9daaed1bd278 144 Gene3D G3DSA:3.30.300.20 1 129 1.5E-34 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 SMART SM00174 6 165 3.0E-5 T 23-04-2016 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 Gene3D G3DSA:3.40.50.300 4 170 4.2E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 SMART SM00173 1 165 2.8E-10 T 23-04-2016 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 PANTHER PTHR24073:SF529 2 163 2.3E-34 T 23-04-2016 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 157 3.5E-18 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 PANTHER PTHR24073 2 163 2.3E-34 T 23-04-2016 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 SUPERFAMILY SSF52540 3 167 2.8E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 PRINTS PR00449 Transforming protein P21 ras signature 45 67 3.0E-22 T 23-04-2016 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 PRINTS PR00449 Transforming protein P21 ras signature 106 119 3.0E-22 T 23-04-2016 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 PRINTS PR00449 Transforming protein P21 ras signature 27 43 3.0E-22 T 23-04-2016 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 PRINTS PR00449 Transforming protein P21 ras signature 4 25 3.0E-22 T 23-04-2016 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 PRINTS PR00449 Transforming protein P21 ras signature 140 162 3.0E-22 T 23-04-2016 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 Pfam PF00071 Ras family 5 162 5.4E-30 T 23-04-2016 IPR001806 Small GTPase superfamily GO:0005525|GO:0007264 NIDE_RS01255 5ef185158cdaa1548113dbeb67803289 178 SMART SM00175 5 165 1.8E-13 T 23-04-2016 NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 SUPERFAMILY SSF53927 211 517 2.31E-121 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 Pfam PF02142 MGS-like domain 16 130 2.5E-26 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 Gene3D G3DSA:3.40.140.20 367 507 4.7E-53 T 23-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 SUPERFAMILY SSF52335 5 194 2.22E-69 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 SMART SM00851 16 131 9.3E-57 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 6 517 4.9E-206 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 PANTHER PTHR11692:SF2 2 517 7.5E-294 T 23-04-2016 NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 Pfam PF01808 AICARFT/IMPCHase bienzyme 136 451 1.2E-114 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 Gene3D G3DSA:3.40.140.20 245 359 5.5E-44 T 23-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 PANTHER PTHR11692 2 517 7.5E-294 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 PIRSF PIRSF000414 1 517 2.4E-210 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 4 517 43.672 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 Gene3D G3DSA:3.40.50.1380 3 187 4.7E-84 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain NIDE_RS11810 a4c3d3f2562bf78c9af42424ca95e4e3 517 SMART SM00798 136 452 4.6E-181 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 NIDE_RS15680 ecacb04f1da0cc2158349aa6cdebbf51 245 PANTHER PTHR40036:SF1 74 202 9.0E-17 T 23-04-2016 NIDE_RS15680 ecacb04f1da0cc2158349aa6cdebbf51 245 Gene3D G3DSA:3.40.50.150 63 206 8.8E-9 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS15680 ecacb04f1da0cc2158349aa6cdebbf51 245 Pfam PF05711 Macrocin-O-methyltransferase (TylF) 71 212 5.0E-19 T 23-04-2016 IPR008884 Macrocin-O-methyltransferase NIDE_RS15680 ecacb04f1da0cc2158349aa6cdebbf51 245 PANTHER PTHR40036 74 202 9.0E-17 T 23-04-2016 NIDE_RS15680 ecacb04f1da0cc2158349aa6cdebbf51 245 SUPERFAMILY SSF53335 63 204 8.46E-16 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS03740 58ca4b90a728db803589853ed451b2b0 272 SUPERFAMILY SSF56300 1 256 7.28E-48 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like NIDE_RS03740 58ca4b90a728db803589853ed451b2b0 272 PIRSF PIRSF000903 1 271 3.8E-97 T 23-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 NIDE_RS03740 58ca4b90a728db803589853ed451b2b0 272 PANTHER PTHR24032 1 261 2.1E-96 T 23-04-2016 NIDE_RS03740 58ca4b90a728db803589853ed451b2b0 272 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 262 9.7E-76 T 23-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 NIDE_RS03740 58ca4b90a728db803589853ed451b2b0 272 PANTHER PTHR24032:SF27 1 261 2.1E-96 T 23-04-2016 NIDE_RS03740 58ca4b90a728db803589853ed451b2b0 272 Pfam PF00149 Calcineurin-like phosphoesterase 2 138 3.2E-10 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 NIDE_RS03740 58ca4b90a728db803589853ed451b2b0 272 Gene3D G3DSA:3.60.21.10 1 130 3.6E-54 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like NIDE_RS03740 58ca4b90a728db803589853ed451b2b0 272 Gene3D G3DSA:3.60.21.10 167 267 3.6E-54 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 838 855 - T 23-04-2016 IPR010917 TonB-dependent receptor, conserved site NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 PANTHER PTHR32552:SF10 185 855 7.2E-183 T 23-04-2016 NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 PANTHER PTHR32552:SF10 147 165 7.2E-183 T 23-04-2016 NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 195 855 8.9E-116 T 23-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 Pfam PF00593 TonB dependent receptor 603 853 1.4E-34 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 Gene3D G3DSA:2.40.170.20 307 855 5.3E-144 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 Pfam PF07715 TonB-dependent Receptor Plug Domain 194 293 2.2E-17 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 PANTHER PTHR32552 185 855 7.2E-183 T 23-04-2016 NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 PANTHER PTHR32552 147 165 7.2E-183 T 23-04-2016 NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 SUPERFAMILY SSF56935 153 855 5.95E-132 T 23-04-2016 NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 SMART SM00965 75 126 1.1E-9 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 NIDE_RS09950 edfd39a105b44ec094d751a31c74ac03 855 Gene3D G3DSA:2.170.130.10 153 302 2.2E-34 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS09040 3a25c56514dc53d5b592dd311cdbce20 179 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 9 167 3.0E-56 T 23-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 NIDE_RS09040 3a25c56514dc53d5b592dd311cdbce20 179 PANTHER PTHR35850:SF1 3 163 7.2E-70 T 23-04-2016 NIDE_RS09040 3a25c56514dc53d5b592dd311cdbce20 179 PIRSF PIRSF028301 3 178 4.7E-63 T 23-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 NIDE_RS09040 3a25c56514dc53d5b592dd311cdbce20 179 PANTHER PTHR35850 3 163 7.2E-70 T 23-04-2016 NIDE_RS09040 3a25c56514dc53d5b592dd311cdbce20 179 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 13 167 3.0E-58 T 23-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 PANTHER PTHR11728 9 340 6.9E-134 T 23-04-2016 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 SUPERFAMILY SSF48179 185 337 3.4E-53 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 194 215 - T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 186 326 1.4E-49 T 23-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 Gene3D G3DSA:1.10.1040.10 190 332 5.8E-56 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 9 164 6.0E-46 T 23-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 PIRSF PIRSF000114 2 338 3.1E-103 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 11 28 1.9E-47 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 204 228 1.9E-47 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 139 159 1.9E-47 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 179 203 1.9E-47 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 244 261 1.9E-47 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 61 88 1.9E-47 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 Gene3D G3DSA:3.40.50.720 5 189 2.3E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 SUPERFAMILY SSF51735 8 184 3.23E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02450 b7e1ec56553b83aa1ca32bef8cc874a1 341 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 7 328 37.319 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 NIDE_RS13130 221fcd3cb1932b6c8870812e49590f87 392 SUPERFAMILY SSF53756 69 380 1.73E-16 T 23-04-2016 NIDE_RS13130 221fcd3cb1932b6c8870812e49590f87 392 Pfam PF13439 Glycosyltransferase Family 4 65 185 5.3E-12 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS16270 83b9a70de9d8556862edffbd1e9d94a1 211 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 25 203 6.9E-77 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 NIDE_RS16270 83b9a70de9d8556862edffbd1e9d94a1 211 Gene3D G3DSA:3.30.1130.10 77 203 6.2E-63 T 23-04-2016 NIDE_RS16270 83b9a70de9d8556862edffbd1e9d94a1 211 PANTHER PTHR11109 25 208 3.0E-112 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 NIDE_RS16270 83b9a70de9d8556862edffbd1e9d94a1 211 Gene3D G3DSA:1.10.286.10 21 72 7.9E-21 T 23-04-2016 NIDE_RS16270 83b9a70de9d8556862edffbd1e9d94a1 211 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 130 140 - T 23-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 NIDE_RS16270 83b9a70de9d8556862edffbd1e9d94a1 211 SUPERFAMILY SSF55620 20 203 1.85E-79 T 23-04-2016 NIDE_RS16270 83b9a70de9d8556862edffbd1e9d94a1 211 Pfam PF01227 GTP cyclohydrolase I 26 202 2.4E-75 T 23-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 NIDE_RS16270 83b9a70de9d8556862edffbd1e9d94a1 211 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 82 98 - T 23-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 NIDE_RS16270 83b9a70de9d8556862edffbd1e9d94a1 211 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 21 203 38.744 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 NIDE_RS03645 323c3a37ddedcbca27062748da92b690 325 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 325 70.661 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 NIDE_RS03645 323c3a37ddedcbca27062748da92b690 325 SUPERFAMILY SSF53901 4 325 6.06E-69 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS03645 323c3a37ddedcbca27062748da92b690 325 Gene3D G3DSA:3.40.47.10 3 160 2.5E-64 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS03645 323c3a37ddedcbca27062748da92b690 325 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 236 325 2.0E-37 T 23-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 NIDE_RS03645 323c3a37ddedcbca27062748da92b690 325 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 3 325 1.2E-128 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 NIDE_RS03645 323c3a37ddedcbca27062748da92b690 325 PANTHER PTHR18919 27 325 4.3E-130 T 23-04-2016 NIDE_RS03645 323c3a37ddedcbca27062748da92b690 325 PANTHER PTHR18919:SF109 27 325 4.3E-130 T 23-04-2016 NIDE_RS03645 323c3a37ddedcbca27062748da92b690 325 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 108 184 3.5E-30 T 23-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 NIDE_RS03645 323c3a37ddedcbca27062748da92b690 325 Gene3D G3DSA:3.40.47.10 161 325 2.0E-56 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS03860 8706a16f74495385e21a5d86a0bb89ff 533 Gene3D G3DSA:3.90.700.10 313 423 1.4E-24 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain NIDE_RS03860 8706a16f74495385e21a5d86a0bb89ff 533 Gene3D G3DSA:3.50.50.60 424 484 3.7E-89 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS03860 8706a16f74495385e21a5d86a0bb89ff 533 Gene3D G3DSA:3.50.50.60 81 312 3.7E-89 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS03860 8706a16f74495385e21a5d86a0bb89ff 533 SUPERFAMILY SSF51905 431 486 5.57E-63 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS03860 8706a16f74495385e21a5d86a0bb89ff 533 SUPERFAMILY SSF51905 78 324 5.57E-63 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS03860 8706a16f74495385e21a5d86a0bb89ff 533 SUPERFAMILY SSF56425 308 427 8.82E-28 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain NIDE_RS03860 8706a16f74495385e21a5d86a0bb89ff 533 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 87 106 4.9E-8 T 23-04-2016 NIDE_RS03860 8706a16f74495385e21a5d86a0bb89ff 533 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 430 452 4.9E-8 T 23-04-2016 NIDE_RS03860 8706a16f74495385e21a5d86a0bb89ff 533 PANTHER PTHR11632 72 484 6.2E-127 T 23-04-2016 NIDE_RS03860 8706a16f74495385e21a5d86a0bb89ff 533 Pfam PF00890 FAD binding domain 86 466 5.4E-84 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain NIDE_RS14515 df729f1d1b9e37e64a6ff538ff7e3b65 151 Gene3D G3DSA:1.20.1260.10 3 143 1.9E-29 T 23-04-2016 IPR012347 Ferritin-related NIDE_RS14515 df729f1d1b9e37e64a6ff538ff7e3b65 151 SUPERFAMILY SSF47240 2 141 5.13E-29 T 23-04-2016 IPR009078 Ferritin-like superfamily NIDE_RS14515 df729f1d1b9e37e64a6ff538ff7e3b65 151 Pfam PF00210 Ferritin-like domain 11 142 2.9E-18 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 Gene3D G3DSA:3.30.2090.10 724 818 4.4E-12 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 Gene3D G3DSA:3.30.2090.10 182 262 6.9E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 SUPERFAMILY SSF82693 40 134 6.98E-22 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 PANTHER PTHR32063 1 1037 0.0 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 Pfam PF00873 AcrB/AcrD/AcrF family 6 1034 4.8E-236 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 Gene3D G3DSA:1.10.3850.10 821 1036 1.5E-58 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 Gene3D G3DSA:1.10.3850.10 274 491 1.1E-55 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 SUPERFAMILY SSF82714 182 262 1.44E-12 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 SUPERFAMILY SSF82866 815 1039 3.01E-50 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 Gene3D G3DSA:3.30.70.1430 40 140 2.0E-20 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 SUPERFAMILY SSF82693 136 181 2.72E-13 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 SUPERFAMILY SSF82693 268 323 2.72E-13 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.91E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.91E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 548 565 1.91E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.91E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.91E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.91E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.91E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.91E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 SUPERFAMILY SSF82866 291 489 7.32E-44 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 PANTHER PTHR32063:SF0 1 1037 0.0 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 SUPERFAMILY SSF82693 562 668 8.89E-5 T 23-04-2016 NIDE_RS03325 d727414fbc52ce87d1e577102f7b208a 1058 SUPERFAMILY SSF82714 725 816 3.27E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 Gene3D G3DSA:3.30.360.10 202 504 6.2E-117 T 23-04-2016 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 PANTHER PTHR23429:SF0 7 503 3.9E-229 T 23-04-2016 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 SUPERFAMILY SSF55347 192 504 1.99E-111 T 23-04-2016 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 PIRSF PIRSF000110 5 507 5.3E-174 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 192 198 - T 23-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 SUPERFAMILY SSF51735 9 205 1.14E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 Gene3D G3DSA:3.40.50.720 14 201 1.6E-65 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 15 505 2.4E-190 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 PANTHER PTHR23429 7 503 3.9E-229 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 252 268 2.5E-48 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 343 369 2.5E-48 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 234 251 2.5E-48 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 182 210 2.5E-48 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 158 171 2.5E-48 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 204 503 5.3E-115 T 23-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 15 505 81.047 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS02145 db3676e816955358e8f9109caade5e8d 509 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 19 202 1.3E-59 T 23-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS19860 1667548213ff023cac7ff2a52e0d68a8 384 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 228 241 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 NIDE_RS19860 1667548213ff023cac7ff2a52e0d68a8 384 Gene3D G3DSA:3.90.1150.10 269 382 3.9E-21 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS19860 1667548213ff023cac7ff2a52e0d68a8 384 Pfam PF00155 Aminotransferase class I and II 26 379 9.5E-65 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NIDE_RS19860 1667548213ff023cac7ff2a52e0d68a8 384 Gene3D G3DSA:3.40.640.10 39 268 2.6E-74 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS19860 1667548213ff023cac7ff2a52e0d68a8 384 PANTHER PTHR11751:SF428 1 383 1.8E-120 T 23-04-2016 NIDE_RS19860 1667548213ff023cac7ff2a52e0d68a8 384 SUPERFAMILY SSF53383 2 382 5.85E-101 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS19860 1667548213ff023cac7ff2a52e0d68a8 384 PANTHER PTHR11751 1 383 1.8E-120 T 23-04-2016 NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 PANTHER PTHR24220 332 540 2.5E-83 T 23-04-2016 NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 Gene3D G3DSA:3.40.50.300 354 545 3.3E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 SUPERFAMILY SSF90123 6 298 7.32E-33 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 SMART SM00382 360 539 4.0E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 SUPERFAMILY SSF52540 351 543 1.62E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 Pfam PF00664 ABC transporter transmembrane region 17 201 1.7E-10 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 ProSitePatterns PS00211 ABC transporters family signature. 461 475 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 7 540 9.7E-147 T 23-04-2016 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015197|GO:0015833|GO:0016021 NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 Gene3D G3DSA:1.20.1560.10 6 301 1.2E-28 T 23-04-2016 NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 PANTHER PTHR24220:SF425 332 540 2.5E-83 T 23-04-2016 NIDE_RS09850 00d3ee25b62a3b22addce0820cd65356 565 Pfam PF00005 ABC transporter 354 488 1.8E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS05225 367b45447f411225ef463b7e36f5193d 891 PANTHER PTHR10412:SF10 14 889 0.0 T 23-04-2016 NIDE_RS05225 367b45447f411225ef463b7e36f5193d 891 Pfam PF03200 Glycosyl hydrolase family 63 C-terminal domain 709 794 1.6E-5 T 23-04-2016 IPR031335 Glycosyl hydrolase family 63, C-terminal KEGG: 00052+3.2.1.10|KEGG: 00500+3.2.1.10|KEGG: 00510+3.2.1.106 NIDE_RS05225 367b45447f411225ef463b7e36f5193d 891 PANTHER PTHR10412 14 889 0.0 T 23-04-2016 IPR004888 Glycoside hydrolase family 63 GO:0004573|GO:0009311 NIDE_RS05225 367b45447f411225ef463b7e36f5193d 891 SUPERFAMILY SSF48208 398 660 4.22E-49 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS05225 367b45447f411225ef463b7e36f5193d 891 SUPERFAMILY SSF48208 709 888 4.22E-49 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 Gene3D G3DSA:1.10.1660.10 63 134 1.5E-25 T 23-04-2016 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 4.7E-24 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 4.7E-24 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 4.7E-24 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 SMART SM00422 8 77 4.3E-31 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 Pfam PF00376 MerR family regulatory protein 9 46 8.0E-13 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 TIGRFAM TIGR02051 MerR: Hg(II)-responsive transcriptional regulator 9 132 1.5E-52 T 23-04-2016 IPR011794 Hg(II)-responsive transcriptional regulator GO:0003677|GO:0006355|GO:0045340|GO:0046689 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 SUPERFAMILY SSF46955 8 119 9.89E-31 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 Gene3D G3DSA:1.10.1660.10 6 62 1.0E-23 T 23-04-2016 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 PANTHER PTHR30204 1 118 1.8E-29 T 23-04-2016 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 Pfam PF09278 MerR, DNA binding 51 113 3.2E-17 T 23-04-2016 IPR015358 Transcription regulator MerR, DNA binding NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 PANTHER PTHR30204:SF18 1 118 1.8E-29 T 23-04-2016 NIDE_RS00310 f4fa9b25ebcd1761452a6dad2effe351 135 ProSitePatterns PS00552 MerR-type HTH domain signature. 11 33 - T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS15640 4f24ddae2fd5ed237794527f7a2c01cc 436 PANTHER PTHR10742:SF271 2 430 1.5E-47 T 23-04-2016 NIDE_RS15640 4f24ddae2fd5ed237794527f7a2c01cc 436 PANTHER PTHR10742 2 430 1.5E-47 T 23-04-2016 NIDE_RS15640 4f24ddae2fd5ed237794527f7a2c01cc 436 Gene3D G3DSA:3.50.50.60 193 296 2.9E-21 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS15640 4f24ddae2fd5ed237794527f7a2c01cc 436 Gene3D G3DSA:3.50.50.60 2 96 2.9E-21 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS15640 4f24ddae2fd5ed237794527f7a2c01cc 436 Pfam PF01593 Flavin containing amine oxidoreductase 9 430 3.2E-16 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 NIDE_RS15640 4f24ddae2fd5ed237794527f7a2c01cc 436 SUPERFAMILY SSF51905 385 430 5.83E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS15640 4f24ddae2fd5ed237794527f7a2c01cc 436 SUPERFAMILY SSF51905 2 297 5.83E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS08020 e2246cc83bdac5076583b42407784c75 201 Gene3D G3DSA:1.10.10.10 129 193 6.8E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS08020 e2246cc83bdac5076583b42407784c75 201 Pfam PF08281 Sigma-70, region 4 134 187 1.8E-13 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS08020 e2246cc83bdac5076583b42407784c75 201 Pfam PF04542 Sigma-70 region 2 31 99 1.1E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS08020 e2246cc83bdac5076583b42407784c75 201 SUPERFAMILY SSF88946 14 114 3.61E-24 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS08020 e2246cc83bdac5076583b42407784c75 201 PANTHER PTHR30173 2 193 2.8E-52 T 23-04-2016 NIDE_RS08020 e2246cc83bdac5076583b42407784c75 201 Gene3D G3DSA:1.10.1740.10 13 119 3.7E-24 T 23-04-2016 NIDE_RS08020 e2246cc83bdac5076583b42407784c75 201 SUPERFAMILY SSF88659 117 193 1.42E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS08020 e2246cc83bdac5076583b42407784c75 201 PANTHER PTHR30173:SF16 2 193 2.8E-52 T 23-04-2016 NIDE_RS08020 e2246cc83bdac5076583b42407784c75 201 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 27 189 3.7E-28 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS00770 5ccc6fd05ec3b216ad7ae9a8963770c5 154 PANTHER PTHR30455:SF2 2 154 1.1E-66 T 23-04-2016 NIDE_RS00770 5ccc6fd05ec3b216ad7ae9a8963770c5 154 Pfam PF03477 ATP cone domain 51 136 3.8E-18 T 23-04-2016 IPR005144 ATP-cone domain NIDE_RS00770 5ccc6fd05ec3b216ad7ae9a8963770c5 154 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 154 83.462 T 23-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 NIDE_RS00770 5ccc6fd05ec3b216ad7ae9a8963770c5 154 PANTHER PTHR30455 2 154 1.1E-66 T 23-04-2016 NIDE_RS00770 5ccc6fd05ec3b216ad7ae9a8963770c5 154 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 2.8E-61 T 23-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 NIDE_RS13665 0a8ee3c6ac2f1384e0d889b16510961f 466 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 17 466 5.8E-146 T 23-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase NIDE_RS13665 0a8ee3c6ac2f1384e0d889b16510961f 466 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 16 466 3.9E-153 T 23-04-2016 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 NIDE_RS13665 0a8ee3c6ac2f1384e0d889b16510961f 466 Pfam PF13727 CoA-binding domain 66 242 3.9E-30 T 23-04-2016 NIDE_RS13665 0a8ee3c6ac2f1384e0d889b16510961f 466 SUPERFAMILY SSF51735 147 275 1.97E-14 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13665 0a8ee3c6ac2f1384e0d889b16510961f 466 Pfam PF02397 Bacterial sugar transferase 279 457 4.8E-58 T 23-04-2016 IPR003362 Bacterial sugar transferase NIDE_RS13665 0a8ee3c6ac2f1384e0d889b16510961f 466 PANTHER PTHR30576:SF0 49 466 6.3E-156 T 23-04-2016 NIDE_RS13665 0a8ee3c6ac2f1384e0d889b16510961f 466 PANTHER PTHR30576 49 466 6.3E-156 T 23-04-2016 NIDE_RS13665 0a8ee3c6ac2f1384e0d889b16510961f 466 Gene3D G3DSA:3.40.50.720 146 225 2.2E-10 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02935 1a1e52f46e82e70912fcbd43df43a071 177 SUPERFAMILY SSF52833 37 176 1.43E-39 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS02935 1a1e52f46e82e70912fcbd43df43a071 177 Gene3D G3DSA:3.40.30.10 10 175 4.3E-45 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS02935 1a1e52f46e82e70912fcbd43df43a071 177 ProSitePatterns PS00194 Thioredoxin family active site. 67 85 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 NIDE_RS02935 1a1e52f46e82e70912fcbd43df43a071 177 PANTHER PTHR10681 34 159 3.8E-28 T 23-04-2016 NIDE_RS02935 1a1e52f46e82e70912fcbd43df43a071 177 Pfam PF00578 AhpC/TSA family 40 153 8.5E-25 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS02935 1a1e52f46e82e70912fcbd43df43a071 177 PANTHER PTHR10681:SF104 34 159 3.8E-28 T 23-04-2016 NIDE_RS20215 8068d2a73a516367b4a069cc0aa91aaf 209 SUPERFAMILY SSF54523 13 94 2.83E-19 T 23-04-2016 NIDE_RS20215 8068d2a73a516367b4a069cc0aa91aaf 209 PRINTS PR00813 Bacterial general secretion pathway protein G signature 48 66 8.7E-12 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 NIDE_RS20215 8068d2a73a516367b4a069cc0aa91aaf 209 PRINTS PR00813 Bacterial general secretion pathway protein G signature 12 37 8.7E-12 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 NIDE_RS20215 8068d2a73a516367b4a069cc0aa91aaf 209 Gene3D G3DSA:3.30.700.10 13 79 2.1E-13 T 23-04-2016 NIDE_RS20215 8068d2a73a516367b4a069cc0aa91aaf 209 PANTHER PTHR30093 8 96 7.1E-13 T 23-04-2016 NIDE_RS20215 8068d2a73a516367b4a069cc0aa91aaf 209 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 8 32 3.2E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS20215 8068d2a73a516367b4a069cc0aa91aaf 209 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 33 2.1E-5 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 SUPERFAMILY SSF54791 212 294 1.84E-14 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 SMART SM00471 334 440 1.0E-9 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 Pfam PF12072 Domain of unknown function (DUF3552) 9 207 1.3E-45 T 23-04-2016 IPR022711 Ribonuclease Y, N-terminal NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 Pfam PF00013 KH domain 216 270 5.1E-7 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 SUPERFAMILY SSF109604 324 473 7.33E-26 T 23-04-2016 NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 Hamap MF_00335 Ribonuclease Y [rny]. 3 522 23.371 T 23-04-2016 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 TIGRFAM TIGR00277 HDIG: HDIG domain 334 411 3.1E-20 T 23-04-2016 IPR006675 HDIG domain NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 SMART SM00322 210 277 4.3E-7 T 23-04-2016 IPR004087 K Homology domain GO:0003676 NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 Pfam PF01966 HD domain 339 430 1.1E-17 T 23-04-2016 IPR006674 HD domain NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 PANTHER PTHR12826 192 521 3.6E-120 T 23-04-2016 NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 12 522 7.5E-205 T 23-04-2016 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 Gene3D G3DSA:1.10.3210.10 318 498 3.6E-39 T 23-04-2016 IPR006674 HD domain NIDE_RS17015 204754dfe98ee5bb1c0a7632568653d2 522 Gene3D G3DSA:3.30.1370.10 222 303 2.1E-6 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 NIDE_RS18750 329be9f976c1398ee30fa1220ad22d0b 529 PANTHER PTHR10277 4 529 7.4E-266 T 23-04-2016 NIDE_RS18750 329be9f976c1398ee30fa1220ad22d0b 529 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 12 526 2.9E-231 T 23-04-2016 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101|UniPathway: UPA00047 NIDE_RS18750 329be9f976c1398ee30fa1220ad22d0b 529 SUPERFAMILY SSF110921 420 520 5.49E-20 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS18750 329be9f976c1398ee30fa1220ad22d0b 529 SMART SM00917 381 524 1.5E-39 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS18750 329be9f976c1398ee30fa1220ad22d0b 529 Pfam PF08502 LeuA allosteric (dimerisation) domain 382 523 8.4E-28 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS18750 329be9f976c1398ee30fa1220ad22d0b 529 Pfam PF00682 HMGL-like 12 279 1.9E-45 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 NIDE_RS18750 329be9f976c1398ee30fa1220ad22d0b 529 Gene3D G3DSA:3.20.20.70 7 354 1.8E-122 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS18750 329be9f976c1398ee30fa1220ad22d0b 529 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 19 35 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS18750 329be9f976c1398ee30fa1220ad22d0b 529 SUPERFAMILY SSF51569 9 299 2.01E-80 T 23-04-2016 NIDE_RS18750 329be9f976c1398ee30fa1220ad22d0b 529 PANTHER PTHR10277:SF5 4 529 7.4E-266 T 23-04-2016 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101|UniPathway: UPA00047 NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 SUPERFAMILY SSF48019 261 427 1.25E-64 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 Gene3D G3DSA:1.20.272.10 258 356 7.0E-42 T 23-04-2016 NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 25 144 3.1E-13 T 23-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 Pfam PF12002 MgsA AAA+ ATPase C terminal 278 427 1.3E-59 T 23-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 Pfam PF16193 AAA C-terminal domain 198 276 3.8E-20 T 23-04-2016 IPR032423 AAA ATPase, C-terminal domain NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 SMART SM00382 58 174 1.0E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 SUPERFAMILY SSF52540 23 244 3.55E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 PANTHER PTHR13779 24 427 2.2E-182 T 23-04-2016 NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 Gene3D G3DSA:1.10.3710.10 357 428 9.4E-22 T 23-04-2016 NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 Gene3D G3DSA:3.40.50.300 22 171 1.3E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16260 e38114371538bb6d0acb89682e04878e 429 PANTHER PTHR13779:SF7 24 427 2.2E-182 T 23-04-2016 NIDE_RS18525 84ccccdf300a638298014cc2645d9e1e 161 Pfam PF01878 EVE domain 7 153 5.1E-57 T 23-04-2016 IPR002740 EVE domain NIDE_RS18525 84ccccdf300a638298014cc2645d9e1e 161 Gene3D G3DSA:3.10.590.10 6 153 3.3E-33 T 23-04-2016 IPR002740 EVE domain NIDE_RS18525 84ccccdf300a638298014cc2645d9e1e 161 PANTHER PTHR14087 1 156 1.0E-85 T 23-04-2016 NIDE_RS18525 84ccccdf300a638298014cc2645d9e1e 161 SUPERFAMILY SSF88697 4 156 8.2E-62 T 23-04-2016 IPR015947 PUA-like domain NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 Pfam PF12142 Polyphenol oxidase middle domain 281 317 7.7E-7 T 23-04-2016 IPR022739 Polyphenol oxidase, central domain GO:0004097|GO:0055114 KEGG: 00350+1.10.3.1|KEGG: 00950+1.10.3.1|MetaCyc: PWY-6752 NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 ProSitePatterns PS00497 Tyrosinase CuA-binding region signature. 122 139 - T 23-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 PRINTS PR00092 Tyrosinase copper-binding domain signature 229 240 4.4E-14 T 23-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 PRINTS PR00092 Tyrosinase copper-binding domain signature 122 139 4.4E-14 T 23-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 PRINTS PR00092 Tyrosinase copper-binding domain signature 249 267 4.4E-14 T 23-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 Pfam PF00264 Common central domain of tyrosinase 184 269 4.5E-18 T 23-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 Pfam PF00264 Common central domain of tyrosinase 103 170 1.2E-13 T 23-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 ProSitePatterns PS00498 Tyrosinase and hemocyanins CuB-binding region signature. 250 261 - T 23-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 PANTHER PTHR11474:SF16 69 315 1.4E-60 T 23-04-2016 NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 SUPERFAMILY SSF48056 47 318 2.49E-61 T 23-04-2016 IPR008922 Uncharacterised domain, di-copper centre NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 Gene3D G3DSA:1.10.1280.10 47 317 1.2E-53 T 23-04-2016 IPR008922 Uncharacterised domain, di-copper centre NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 PANTHER PTHR11474 69 315 1.4E-60 T 23-04-2016 NIDE_RS14670 049e9b3dd2921bacf0a007df8fc671b7 478 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 14 39 9.6E-4 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal NIDE_RS13805 138f30573f453e1c082bda63a0ffd307 283 PANTHER PTHR10491:SF4 2 275 1.4E-87 T 23-04-2016 NIDE_RS13805 138f30573f453e1c082bda63a0ffd307 283 SUPERFAMILY SSF51735 2 274 1.53E-87 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13805 138f30573f453e1c082bda63a0ffd307 283 Pfam PF04321 RmlD substrate binding domain 2 274 1.4E-92 T 23-04-2016 IPR029903 RmlD-like substrate binding domain NIDE_RS13805 138f30573f453e1c082bda63a0ffd307 283 PANTHER PTHR10491 2 275 1.4E-87 T 23-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family NIDE_RS13805 138f30573f453e1c082bda63a0ffd307 283 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 274 6.0E-92 T 23-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family NIDE_RS13805 138f30573f453e1c082bda63a0ffd307 283 Gene3D G3DSA:3.40.50.720 2 224 8.0E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19585 7a9eb5e184690b01b7d47064fcb4c03f 85 PANTHER PTHR38813:SF1 2 84 1.0E-15 T 23-04-2016 NIDE_RS19585 7a9eb5e184690b01b7d47064fcb4c03f 85 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 84 1.6E-11 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NIDE_RS19585 7a9eb5e184690b01b7d47064fcb4c03f 85 SUPERFAMILY SSF143011 1 83 2.62E-22 T 23-04-2016 NIDE_RS19585 7a9eb5e184690b01b7d47064fcb4c03f 85 PANTHER PTHR38813 2 84 1.0E-15 T 23-04-2016 NIDE_RS10140 8e7d7942680ad5a22b08013659a56c04 484 Gene3D G3DSA:1.10.10.60 412 457 6.2E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS10140 8e7d7942680ad5a22b08013659a56c04 484 Pfam PF00158 Sigma-54 interaction domain 149 314 1.8E-59 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS10140 8e7d7942680ad5a22b08013659a56c04 484 SUPERFAMILY SSF52540 149 391 7.61E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10140 8e7d7942680ad5a22b08013659a56c04 484 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 173 186 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS10140 8e7d7942680ad5a22b08013659a56c04 484 Gene3D G3DSA:1.10.8.60 322 393 3.9E-25 T 23-04-2016 NIDE_RS10140 8e7d7942680ad5a22b08013659a56c04 484 PANTHER PTHR32071 72 467 1.3E-126 T 23-04-2016 NIDE_RS10140 8e7d7942680ad5a22b08013659a56c04 484 SMART SM00382 169 313 1.1E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10140 8e7d7942680ad5a22b08013659a56c04 484 Gene3D G3DSA:3.40.50.300 146 321 9.4E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10140 8e7d7942680ad5a22b08013659a56c04 484 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 235 250 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS10140 8e7d7942680ad5a22b08013659a56c04 484 SUPERFAMILY SSF46689 362 457 1.3E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 Pfam PF12705 PD-(D/E)XK nuclease superfamily 969 1110 3.4E-9 T 23-04-2016 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 PANTHER PTHR11070 305 720 3.1E-99 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 PANTHER PTHR11070 122 218 3.1E-99 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 PANTHER PTHR11070 830 1105 3.1E-99 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 PANTHER PTHR11070 13 88 3.1E-99 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 PANTHER PTHR11070 738 804 3.1E-99 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 Gene3D G3DSA:3.90.320.10 950 1116 5.4E-14 T 23-04-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 SUPERFAMILY SSF52540 327 802 4.43E-113 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 SUPERFAMILY SSF52540 122 220 4.43E-113 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 SUPERFAMILY SSF52540 831 859 4.43E-113 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 SUPERFAMILY SSF52540 13 79 4.43E-113 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 Pfam PF00580 UvrD/REP helicase N-terminal domain 13 444 2.7E-51 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 SUPERFAMILY SSF52980 953 1121 8.04E-21 T 23-04-2016 IPR011335 Restriction endonuclease type II-like NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 Gene3D G3DSA:3.40.50.300 12 75 9.0E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 Gene3D G3DSA:3.40.50.300 130 189 9.0E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 Gene3D G3DSA:3.40.50.300 337 448 9.0E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 Pfam PF13361 UvrD-like helicase C-terminal domain 459 852 9.7E-31 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 Gene3D G3DSA:1.10.486.10 597 737 3.3E-12 T 23-04-2016 NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 Gene3D G3DSA:3.40.50.300 461 590 3.1E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09520 5a9f71102c428cbd21b2dfd244a30a3c 1128 Gene3D G3DSA:3.40.50.300 753 906 3.1E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Pfam PF00384 Molybdopterin oxidoreductase 279 707 1.6E-66 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 152 162 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 11 706 1.3E-149 T 23-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 PIRSF PIRSF036643 4 738 5.3E-196 T 23-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 SUPERFAMILY SSF54292 8 81 1.24E-20 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 PANTHER PTHR11615:SF38 10 341 3.7E-150 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 PANTHER PTHR11615:SF38 492 888 3.7E-150 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 SUPERFAMILY SSF53706 214 733 1.11E-128 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Gene3D G3DSA:3.10.20.30 8 62 8.6E-7 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 7 83 2.0E-20 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 SUPERFAMILY SSF50692 786 888 9.95E-22 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Gene3D G3DSA:3.30.70.20 105 209 5.0E-10 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Gene3D G3DSA:2.40.40.20 788 888 1.4E-20 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 105 117 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Gene3D G3DSA:3.40.50.740 540 562 3.0E-76 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Gene3D G3DSA:3.40.50.740 595 734 3.0E-76 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Gene3D G3DSA:3.40.50.740 279 351 3.0E-76 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Gene3D G3DSA:3.40.228.10 354 539 2.1E-24 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 SUPERFAMILY SSF54862 83 210 3.56E-32 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 223 270 4.0E-9 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 193 204 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 38 55 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 PANTHER PTHR11615 10 341 3.7E-150 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 PANTHER PTHR11615 492 888 3.7E-150 T 23-04-2016 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Pfam PF01568 Molydopterin dinucleotide binding domain 788 880 1.7E-15 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 SMART SM00926 222 276 7.8E-7 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 91 129 2.4E-15 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 SMART SM00929 90 130 7.9E-16 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 NIDE_RS02820 6a81332ad97e92b5a8d250bb8ccb9ce2 889 Gene3D G3DSA:2.20.25.90 223 272 2.4E-12 T 23-04-2016 NIDE_RS12230 c7eab933936b34429d5ea8651ba134dd 198 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 7 190 1.7E-57 T 23-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 NIDE_RS12230 c7eab933936b34429d5ea8651ba134dd 198 Pfam PF01923 Cobalamin adenosyltransferase 6 178 4.3E-59 T 23-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 NIDE_RS12230 c7eab933936b34429d5ea8651ba134dd 198 PANTHER PTHR12213 1 193 1.9E-77 T 23-04-2016 NIDE_RS12230 c7eab933936b34429d5ea8651ba134dd 198 PANTHER PTHR12213:SF0 1 193 1.9E-77 T 23-04-2016 NIDE_RS12230 c7eab933936b34429d5ea8651ba134dd 198 Gene3D G3DSA:1.20.1200.10 15 193 1.2E-62 T 23-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 NIDE_RS12230 c7eab933936b34429d5ea8651ba134dd 198 SUPERFAMILY SSF89028 5 190 3.53E-57 T 23-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 NIDE_RS12230 c7eab933936b34429d5ea8651ba134dd 198 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 12 190 3.0E-43 T 23-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 NIDE_RS20705 3027411a736c289d6739ddaf05aef743 496 Gene3D G3DSA:3.40.50.2300 1 124 7.4E-32 T 23-04-2016 NIDE_RS20705 3027411a736c289d6739ddaf05aef743 496 SUPERFAMILY SSF52172 1 128 7.54E-33 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20705 3027411a736c289d6739ddaf05aef743 496 PANTHER PTHR26402 2 136 4.2E-27 T 23-04-2016 NIDE_RS20705 3027411a736c289d6739ddaf05aef743 496 SMART SM00448 2 115 2.9E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20705 3027411a736c289d6739ddaf05aef743 496 Pfam PF00072 Response regulator receiver domain 4 115 3.8E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS21090 3eba6fbbef114692a095084a2169435d 250 Pfam PF00691 OmpA family 105 170 4.0E-7 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS21090 3eba6fbbef114692a095084a2169435d 250 Gene3D G3DSA:3.30.1330.60 102 222 7.1E-17 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS21090 3eba6fbbef114692a095084a2169435d 250 SUPERFAMILY SSF103088 104 222 5.89E-12 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20755 b10c617b6b130dd20a5e822c6debc375 107 Gene3D G3DSA:3.40.50.150 1 79 4.7E-5 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20755 b10c617b6b130dd20a5e822c6debc375 107 SUPERFAMILY SSF53335 2 78 3.01E-6 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS01385 a11df8046b8aa2a85a75089882ff606d 179 PANTHER PTHR13061 1 168 2.1E-71 T 23-04-2016 NIDE_RS01385 a11df8046b8aa2a85a75089882ff606d 179 SUPERFAMILY SSF51161 3 167 1.18E-48 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS01385 a11df8046b8aa2a85a75089882ff606d 179 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 5.4E-8 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS01385 a11df8046b8aa2a85a75089882ff606d 179 Gene3D G3DSA:2.160.10.10 3 166 1.5E-47 T 23-04-2016 NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 SMART SM00382 37 226 9.2E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 SMART SM00382 369 560 7.8E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 SUPERFAMILY SSF52540 339 565 2.28E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 Pfam PF00005 ABC transporter 29 175 2.0E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 Pfam PF00005 ABC transporter 361 504 2.6E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 PANTHER PTHR24220 360 464 1.4E-146 T 23-04-2016 NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 PANTHER PTHR24220 14 281 1.4E-146 T 23-04-2016 NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 SUPERFAMILY SSF52540 12 235 1.66E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 PANTHER PTHR24220:SF0 360 464 1.4E-146 T 23-04-2016 NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 PANTHER PTHR24220:SF0 14 281 1.4E-146 T 23-04-2016 NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 Gene3D G3DSA:3.40.50.300 344 565 2.7E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00155 c081f20512a289f0c370e2379ccf7194 659 Gene3D G3DSA:3.40.50.300 4 234 1.2E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11175 79b39e18f8fd703aa1f588df58aa8b4a 192 PANTHER PTHR30128 71 192 7.2E-37 T 23-04-2016 NIDE_RS11175 79b39e18f8fd703aa1f588df58aa8b4a 192 SUPERFAMILY SSF103088 85 190 3.66E-28 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS11175 79b39e18f8fd703aa1f588df58aa8b4a 192 Gene3D G3DSA:3.30.1330.60 85 190 2.9E-28 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS11175 79b39e18f8fd703aa1f588df58aa8b4a 192 PRINTS PR01021 OMPA domain signature 120 135 1.4E-13 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS11175 79b39e18f8fd703aa1f588df58aa8b4a 192 PRINTS PR01021 OMPA domain signature 90 112 1.4E-13 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS11175 79b39e18f8fd703aa1f588df58aa8b4a 192 PRINTS PR01021 OMPA domain signature 135 151 1.4E-13 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS11175 79b39e18f8fd703aa1f588df58aa8b4a 192 PANTHER PTHR30128:SF18 71 192 7.2E-37 T 23-04-2016 NIDE_RS11175 79b39e18f8fd703aa1f588df58aa8b4a 192 Pfam PF00691 OmpA family 89 184 1.2E-15 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS12970 9ab24b8665ffb07dcd0bf597eee36e96 404 Pfam PF00482 Type II secretion system (T2SS), protein F 72 193 1.7E-27 T 23-04-2016 IPR018076 Type II secretion system F domain NIDE_RS12970 9ab24b8665ffb07dcd0bf597eee36e96 404 Pfam PF00482 Type II secretion system (T2SS), protein F 274 395 2.2E-26 T 23-04-2016 IPR018076 Type II secretion system F domain NIDE_RS12970 9ab24b8665ffb07dcd0bf597eee36e96 404 PANTHER PTHR30012 2 404 2.5E-110 T 23-04-2016 NIDE_RS12970 9ab24b8665ffb07dcd0bf597eee36e96 404 PANTHER PTHR30012:SF0 2 404 2.5E-110 T 23-04-2016 NIDE_RS12970 9ab24b8665ffb07dcd0bf597eee36e96 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 384 403 2.3E-14 T 23-04-2016 IPR003004 GspF/PilC family NIDE_RS12970 9ab24b8665ffb07dcd0bf597eee36e96 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 368 382 2.3E-14 T 23-04-2016 IPR003004 GspF/PilC family NIDE_RS12970 9ab24b8665ffb07dcd0bf597eee36e96 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 165 193 2.3E-14 T 23-04-2016 IPR003004 GspF/PilC family NIDE_RS12970 9ab24b8665ffb07dcd0bf597eee36e96 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 66 78 2.3E-14 T 23-04-2016 IPR003004 GspF/PilC family NIDE_RS12970 9ab24b8665ffb07dcd0bf597eee36e96 404 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 165 193 - T 23-04-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 NIDE_RS09275 4b66356334b9f5e8dd0694bb73be847e 370 SUPERFAMILY SSF111249 8 368 1.31E-169 T 23-04-2016 IPR002803 Fructose-1,6-bisphosphatase, class V NIDE_RS09275 4b66356334b9f5e8dd0694bb73be847e 370 ProDom PD014260 DIHYDROOROTATE DEHYDROGENASE THERMOPHILE-SPECIFIC TA1428 ST0318 BLL2851 16-BISPHOSPHATASE APE1109 PF0613 MJ0299 8 367 5.0E-150 T 23-04-2016 IPR002803 Fructose-1,6-bisphosphatase, class V NIDE_RS09275 4b66356334b9f5e8dd0694bb73be847e 370 Pfam PF01950 Fructose-1,6-bisphosphatase 8 367 8.4E-185 T 23-04-2016 IPR002803 Fructose-1,6-bisphosphatase, class V NIDE_RS09275 4b66356334b9f5e8dd0694bb73be847e 370 PANTHER PTHR38341 7 368 1.1E-197 T 23-04-2016 NIDE_RS09275 4b66356334b9f5e8dd0694bb73be847e 370 PANTHER PTHR38341:SF1 7 368 1.1E-197 T 23-04-2016 NIDE_RS09275 4b66356334b9f5e8dd0694bb73be847e 370 PIRSF PIRSF015647 7 370 3.3E-177 T 23-04-2016 IPR002803 Fructose-1,6-bisphosphatase, class V NIDE_RS17585 d8343f35e4ecc62ff2a3d50af2f93513 157 Gene3D G3DSA:2.60.40.790 7 156 9.0E-48 T 23-04-2016 IPR008978 HSP20-like chaperone NIDE_RS17585 d8343f35e4ecc62ff2a3d50af2f93513 157 PANTHER PTHR11527:SF118 7 156 3.1E-42 T 23-04-2016 NIDE_RS17585 d8343f35e4ecc62ff2a3d50af2f93513 157 PANTHER PTHR11527 7 156 3.1E-42 T 23-04-2016 IPR031107 Small heat shock protein HSP20 NIDE_RS17585 d8343f35e4ecc62ff2a3d50af2f93513 157 SUPERFAMILY SSF49764 45 156 4.53E-42 T 23-04-2016 IPR008978 HSP20-like chaperone NIDE_RS17585 d8343f35e4ecc62ff2a3d50af2f93513 157 Pfam PF00011 Hsp20/alpha crystallin family 55 155 1.7E-29 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain NIDE_RS01785 158d8f5eacd7ca61e3bf7cd86f62f67c 173 SUPERFAMILY SSF48452 34 155 1.07E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS01785 158d8f5eacd7ca61e3bf7cd86f62f67c 173 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 43 158 8.4E-30 T 23-04-2016 IPR014162 Tol-Pal system, YbgF NIDE_RS01785 158d8f5eacd7ca61e3bf7cd86f62f67c 173 PANTHER PTHR26312 55 159 2.0E-16 T 23-04-2016 NIDE_RS01785 158d8f5eacd7ca61e3bf7cd86f62f67c 173 Pfam PF13432 Tetratricopeptide repeat 45 103 8.6E-9 T 23-04-2016 NIDE_RS01785 158d8f5eacd7ca61e3bf7cd86f62f67c 173 Pfam PF13174 Tetratricopeptide repeat 119 148 1.4E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS01785 158d8f5eacd7ca61e3bf7cd86f62f67c 173 Gene3D G3DSA:1.25.40.10 33 155 9.9E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS01785 158d8f5eacd7ca61e3bf7cd86f62f67c 173 PANTHER PTHR26312:SF74 55 159 2.0E-16 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Gene3D G3DSA:1.10.287.130 828 884 1.3E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SMART SM00388 833 899 2.1E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 PANTHER PTHR24423 101 636 2.2E-113 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 PANTHER PTHR24423 776 1051 2.2E-113 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 PRINTS PR00344 Bacterial sensor protein C-terminal signature 996 1006 2.6E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 PRINTS PR00344 Bacterial sensor protein C-terminal signature 978 992 2.6E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1033 1046 2.6E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1009 1027 2.6E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Gene3D G3DSA:3.30.565.10 885 1050 7.6E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 946 1048 2.6E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Pfam PF08448 PAS fold 429 536 1.8E-14 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Pfam PF08448 PAS fold 714 819 4.8E-11 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 421 541 4.0E-20 T 23-04-2016 IPR000014 PAS domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 705 824 8.9E-17 T 23-04-2016 IPR000014 PAS domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 562 684 1.2E-24 T 23-04-2016 IPR000014 PAS domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Gene3D G3DSA:3.30.450.20 415 533 3.2E-22 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SUPERFAMILY SSF47384 826 898 9.42E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Pfam PF00672 HAMP domain 338 404 7.0E-16 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SMART SM00304 356 408 1.2E-14 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SUPERFAMILY SSF158472 356 406 3.53E-10 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SMART SM00091 422 488 1.2E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SMART SM00091 708 773 0.033 T 23-04-2016 IPR000014 PAS domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SMART SM00091 565 631 1.4E-9 T 23-04-2016 IPR000014 PAS domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Gene3D G3DSA:3.30.450.20 676 816 3.7E-19 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SUPERFAMILY SSF55785 556 676 1.01E-19 T 23-04-2016 IPR000014 PAS domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Pfam PF02743 Cache domain 40 314 1.8E-23 T 23-04-2016 IPR033479 Double Cache domain 1 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SUPERFAMILY SSF55785 410 533 1.47E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SMART SM00387 941 1049 1.7E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SUPERFAMILY SSF55785 700 816 1.06E-16 T 23-04-2016 IPR000014 PAS domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Pfam PF00989 PAS fold 565 675 2.0E-13 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Gene3D G3DSA:3.30.450.20 557 675 1.9E-20 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SUPERFAMILY SSF55874 889 1048 1.83E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Gene3D G3DSA:3.30.450.20 201 332 1.8E-6 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Pfam PF00512 His Kinase A (phospho-acceptor) domain 834 896 6.9E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 PANTHER PTHR24423:SF445 101 636 2.2E-113 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 PANTHER PTHR24423:SF445 776 1051 2.2E-113 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 Gene3D G3DSA:3.30.450.20 137 200 2.1E-8 T 23-04-2016 NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SMART SM00086 638 678 15.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SMART SM00086 493 535 6.9E-4 T 23-04-2016 IPR001610 PAC motif NIDE_RS15005 ca0f298a06f724a2e18ffdd768349ce4 1058 SMART SM00086 776 818 2.2E-4 T 23-04-2016 IPR001610 PAC motif NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 SUPERFAMILY SSF52440 15 107 6.14E-28 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 Pfam PF07478 D-ala D-ala ligase C-terminus 118 317 2.2E-55 T 23-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 SUPERFAMILY SSF56059 109 316 2.65E-51 T 23-04-2016 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 Gene3D G3DSA:3.30.1490.20 120 189 1.6E-17 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 75 86 - T 23-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 PANTHER PTHR23132 16 322 8.9E-82 T 23-04-2016 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 Gene3D G3DSA:3.40.50.20 14 96 4.7E-28 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 15 320 35.909 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 PANTHER PTHR23132:SF0 16 322 8.9E-82 T 23-04-2016 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 16 319 3.1E-94 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 262 290 - T 23-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 Pfam PF01820 D-ala D-ala ligase N-terminus 16 98 3.9E-22 T 23-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 Gene3D G3DSA:3.30.470.20 97 115 6.3E-47 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS03505 b96825da89ef78e70287db42c105885f 332 Gene3D G3DSA:3.30.470.20 190 320 6.3E-47 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS20525 cd67d6ea425455a418e7400e3810e431 278 SUPERFAMILY SSF160719 155 263 7.85E-12 T 23-04-2016 NIDE_RS20525 cd67d6ea425455a418e7400e3810e431 278 Gene3D G3DSA:3.10.450.40 193 264 7.5E-8 T 23-04-2016 NIDE_RS20525 cd67d6ea425455a418e7400e3810e431 278 Pfam PF04965 Gene 25-like lysozyme 154 254 1.1E-19 T 23-04-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD NIDE_RS20525 cd67d6ea425455a418e7400e3810e431 278 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 129 274 5.2E-35 T 23-04-2016 IPR017737 Type VI secretion system, lysozyme-related protein NIDE_RS20525 cd67d6ea425455a418e7400e3810e431 278 PANTHER PTHR38595:SF2 155 269 4.6E-14 T 23-04-2016 NIDE_RS20525 cd67d6ea425455a418e7400e3810e431 278 PANTHER PTHR38595 155 269 4.6E-14 T 23-04-2016 NIDE_RS09030 a2f331bfe86268d6491c571fbd5017f5 266 PIRSF PIRSF029288 1 265 8.9E-75 T 23-04-2016 IPR009211 Predicted virulence protein, SciE type NIDE_RS09030 a2f331bfe86268d6491c571fbd5017f5 266 Pfam PF07024 ImpE protein 138 259 1.8E-40 T 23-04-2016 IPR009211 Predicted virulence protein, SciE type NIDE_RS09030 a2f331bfe86268d6491c571fbd5017f5 266 SUPERFAMILY SSF144059 2 261 5.75E-73 T 23-04-2016 NIDE_RS06230 fa42c862f872265b15a0bdfc51288cb9 183 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 96 4.7E-24 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 NIDE_RS06230 fa42c862f872265b15a0bdfc51288cb9 183 PANTHER PTHR33231 1 179 2.7E-29 T 23-04-2016 NIDE_RS06230 fa42c862f872265b15a0bdfc51288cb9 183 Gene3D G3DSA:3.30.160.100 1 81 8.9E-26 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 NIDE_RS06230 fa42c862f872265b15a0bdfc51288cb9 183 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 5 92 3.8E-21 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 NIDE_RS06230 fa42c862f872265b15a0bdfc51288cb9 183 SUPERFAMILY SSF69754 3 100 1.96E-25 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 NIDE_RS06230 fa42c862f872265b15a0bdfc51288cb9 183 Gene3D G3DSA:3.30.540.10 82 168 0.001 T 23-04-2016 NIDE_RS17245 913d24402f4838da2478e6bddca62be8 444 Gene3D G3DSA:3.20.140.10 2 372 1.2E-105 T 23-04-2016 NIDE_RS17245 913d24402f4838da2478e6bddca62be8 444 PANTHER PTHR11098 1 440 9.4E-149 T 23-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 NIDE_RS17245 913d24402f4838da2478e6bddca62be8 444 SUPERFAMILY SSF51690 136 439 5.45E-94 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 NIDE_RS17245 913d24402f4838da2478e6bddca62be8 444 PIRSF PIRSF000484 1 441 1.4E-126 T 23-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 NIDE_RS17245 913d24402f4838da2478e6bddca62be8 444 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 152 332 7.3E-11 T 23-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 NIDE_RS17245 913d24402f4838da2478e6bddca62be8 444 PANTHER PTHR11098:SF1 1 440 9.4E-149 T 23-04-2016 NIDE_RS17245 913d24402f4838da2478e6bddca62be8 444 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 7 432 2.0E-151 T 23-04-2016 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 NIDE_RS17245 913d24402f4838da2478e6bddca62be8 444 SUPERFAMILY SSF54675 2 134 2.75E-45 T 23-04-2016 NIDE_RS00590 dc36626854f873b2fed42ca44c055d5a 166 SUPERFAMILY SSF53955 9 163 1.94E-39 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS00590 dc36626854f873b2fed42ca44c055d5a 166 Gene3D G3DSA:1.10.530.40 15 164 8.9E-41 T 23-04-2016 IPR023347 Lysozyme domain GO:0003796 NIDE_RS00590 dc36626854f873b2fed42ca44c055d5a 166 Pfam PF00959 Phage lysozyme 41 138 1.9E-11 T 23-04-2016 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 NIDE_RS00590 dc36626854f873b2fed42ca44c055d5a 166 PANTHER PTHR38107 10 166 1.2E-26 T 23-04-2016 NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 SUPERFAMILY SSF47384 138 207 8.24E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 Gene3D G3DSA:1.10.287.130 139 205 2.0E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 334 1.1E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 PRINTS PR00344 Bacterial sensor protein C-terminal signature 337 355 1.1E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 PRINTS PR00344 Bacterial sensor protein C-terminal signature 306 320 1.1E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 PRINTS PR00344 Bacterial sensor protein C-terminal signature 361 374 1.1E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 Pfam PF00512 His Kinase A (phospho-acceptor) domain 145 205 3.2E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 PANTHER PTHR24423 128 374 2.8E-64 T 23-04-2016 NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 Gene3D G3DSA:3.30.565.10 217 374 3.1E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 SMART SM00387 251 377 1.8E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 SMART SM00388 144 210 1.0E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 252 374 1.1E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05810 6db5295d616e4fd4ecde988a4782047b 383 SUPERFAMILY SSF55874 200 376 7.07E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20390 6e593acea4239ab5b7bb62609e59d48a 301 SUPERFAMILY SSF46785 138 211 8.98E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS20390 6e593acea4239ab5b7bb62609e59d48a 301 PANTHER PTHR34298:SF2 24 243 3.5E-68 T 23-04-2016 NIDE_RS20390 6e593acea4239ab5b7bb62609e59d48a 301 Gene3D G3DSA:1.10.10.10 54 132 2.2E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS20390 6e593acea4239ab5b7bb62609e59d48a 301 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 58 226 3.8E-43 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 NIDE_RS20390 6e593acea4239ab5b7bb62609e59d48a 301 PANTHER PTHR34298 24 243 3.5E-68 T 23-04-2016 NIDE_RS20390 6e593acea4239ab5b7bb62609e59d48a 301 Hamap MF_01804 Segregation and condensation protein B [scpB]. 55 234 28.845 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 NIDE_RS20390 6e593acea4239ab5b7bb62609e59d48a 301 Gene3D G3DSA:1.10.10.10 137 211 1.7E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS20390 6e593acea4239ab5b7bb62609e59d48a 301 SUPERFAMILY SSF46785 54 132 7.07E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS20390 6e593acea4239ab5b7bb62609e59d48a 301 Pfam PF04079 Segregation and condensation complex subunit ScpB 61 220 8.1E-57 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 NIDE_RS06000 38ba8fb153ea16e38bc117f6b428ed0b 49 PANTHER PTHR15238:SF3 1 49 1.2E-18 T 23-04-2016 NIDE_RS06000 38ba8fb153ea16e38bc117f6b428ed0b 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 23-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06000 38ba8fb153ea16e38bc117f6b428ed0b 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 49 2.4E-20 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06000 38ba8fb153ea16e38bc117f6b428ed0b 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 18.178 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06000 38ba8fb153ea16e38bc117f6b428ed0b 49 Pfam PF00471 Ribosomal protein L33 4 49 1.1E-21 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06000 38ba8fb153ea16e38bc117f6b428ed0b 49 SUPERFAMILY SSF57829 1 49 3.05E-18 T 23-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 NIDE_RS06000 38ba8fb153ea16e38bc117f6b428ed0b 49 PANTHER PTHR15238 1 49 1.2E-18 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PIRSF PIRSF000350 1 458 2.2E-64 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 324 6.8E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 SUPERFAMILY SSF51905 2 333 2.87E-55 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 343 450 4.1E-23 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 289 311 2.7E-29 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 136 154 2.7E-29 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 276 2.7E-29 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.7E-29 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 175 193 2.7E-29 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 Gene3D G3DSA:3.50.50.60 141 333 5.1E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 Gene3D G3DSA:3.30.390.30 340 454 2.4E-28 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 SUPERFAMILY SSF55424 342 456 4.98E-29 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 Gene3D G3DSA:3.50.50.60 2 140 4.6E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PANTHER PTHR22912:SF93 1 455 4.1E-221 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 261 275 4.8E-49 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 175 200 4.8E-49 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 4.8E-49 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 426 446 4.8E-49 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 304 311 4.8E-49 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 339 360 4.8E-49 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 4.8E-49 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 404 419 4.8E-49 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 4.8E-49 T 23-04-2016 NIDE_RS05545 d511538ea77a25d5cd2b467b97c11904 467 PANTHER PTHR22912 1 455 4.1E-221 T 23-04-2016 NIDE_RS03005 a94ef0d74438acd77ac38601a635d846 780 SUPERFAMILY SSF56935 125 777 1.94E-84 T 23-04-2016 NIDE_RS03005 a94ef0d74438acd77ac38601a635d846 780 PANTHER PTHR32552 49 779 2.9E-27 T 23-04-2016 NIDE_RS03005 a94ef0d74438acd77ac38601a635d846 780 Pfam PF07715 TonB-dependent Receptor Plug Domain 127 226 1.5E-13 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS03005 a94ef0d74438acd77ac38601a635d846 780 Pfam PF00593 TonB dependent receptor 510 776 2.5E-23 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS03005 a94ef0d74438acd77ac38601a635d846 780 Gene3D G3DSA:2.170.130.10 126 230 2.0E-18 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS03005 a94ef0d74438acd77ac38601a635d846 780 Gene3D G3DSA:2.40.170.20 231 776 4.5E-67 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 Gene3D G3DSA:3.40.309.10 771 959 6.7E-58 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 Pfam PF00171 Aldehyde dehydrogenase family 523 979 2.7E-138 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 PIRSF PIRSF000197 75 988 2.8E-223 T 23-04-2016 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 Gene3D G3DSA:3.40.605.10 519 770 2.2E-71 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 SUPERFAMILY SSF51730 123 455 2.51E-84 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 SUPERFAMILY SSF53720 519 981 1.01E-134 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 Pfam PF01619 Proline dehydrogenase 131 434 1.1E-78 T 23-04-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 PANTHER PTHR11699:SF18 519 983 1.9E-169 T 23-04-2016 NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 PANTHER PTHR11699 519 983 1.9E-169 T 23-04-2016 NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 Gene3D G3DSA:3.20.20.220 122 440 2.3E-78 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like NIDE_RS11345 34432df659c450d356aed30c3e04086c 993 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 755 762 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 NIDE_RS07950 c410149abb704640ca3526effdb508b4 293 Gene3D G3DSA:3.20.20.70 133 272 5.3E-54 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS07950 c410149abb704640ca3526effdb508b4 293 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 22 110 2.8E-23 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 NIDE_RS07950 c410149abb704640ca3526effdb508b4 293 SUPERFAMILY SSF54675 7 111 1.96E-28 T 23-04-2016 NIDE_RS07950 c410149abb704640ca3526effdb508b4 293 SUPERFAMILY SSF51690 112 282 1.53E-52 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 NIDE_RS07950 c410149abb704640ca3526effdb508b4 293 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 13 281 1.5E-90 T 23-04-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 NIDE_RS07950 c410149abb704640ca3526effdb508b4 293 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 112 281 2.2E-56 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 NIDE_RS07950 c410149abb704640ca3526effdb508b4 293 PIRSF PIRSF006250 4 285 1.2E-87 T 23-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD NIDE_RS07950 c410149abb704640ca3526effdb508b4 293 Gene3D G3DSA:3.90.1170.20 7 132 4.9E-45 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 NIDE_RS07950 c410149abb704640ca3526effdb508b4 293 PANTHER PTHR32179 9 282 9.5E-110 T 23-04-2016 NIDE_RS16985 644320b02a9892d09be6edede3de5e3f 106 Gene3D G3DSA:3.40.250.10 4 106 9.6E-31 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS16985 644320b02a9892d09be6edede3de5e3f 106 Pfam PF00581 Rhodanese-like domain 6 96 5.4E-16 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS16985 644320b02a9892d09be6edede3de5e3f 106 PANTHER PTHR10657:SF12 22 106 1.1E-16 T 23-04-2016 NIDE_RS16985 644320b02a9892d09be6edede3de5e3f 106 SUPERFAMILY SSF52821 4 104 6.81E-32 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS16985 644320b02a9892d09be6edede3de5e3f 106 PANTHER PTHR10657 22 106 1.1E-16 T 23-04-2016 NIDE_RS16985 644320b02a9892d09be6edede3de5e3f 106 SMART SM00450 6 101 1.5E-24 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS10755 b936b915fd0c6fff93b6a605e89b946e 315 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 162 6.1E-22 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain NIDE_RS10755 b936b915fd0c6fff93b6a605e89b946e 315 PANTHER PTHR13696 244 302 5.5E-32 T 23-04-2016 NIDE_RS10755 b936b915fd0c6fff93b6a605e89b946e 315 PANTHER PTHR13696 4 217 5.5E-32 T 23-04-2016 NIDE_RS10755 b936b915fd0c6fff93b6a605e89b946e 315 PANTHER PTHR13696:SF3 244 302 5.5E-32 T 23-04-2016 NIDE_RS10755 b936b915fd0c6fff93b6a605e89b946e 315 PANTHER PTHR13696:SF3 4 217 5.5E-32 T 23-04-2016 NIDE_RS10755 b936b915fd0c6fff93b6a605e89b946e 315 Gene3D G3DSA:3.40.50.300 209 288 9.4E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10755 b936b915fd0c6fff93b6a605e89b946e 315 Gene3D G3DSA:3.40.50.300 1 159 9.4E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10755 b936b915fd0c6fff93b6a605e89b946e 315 SUPERFAMILY SSF52540 212 289 4.16E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10755 b936b915fd0c6fff93b6a605e89b946e 315 SUPERFAMILY SSF52540 1 164 4.16E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12160 d6126d6817e50e9a4e64088d212f8f39 134 SUPERFAMILY SSF50341 2 126 7.85E-11 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS12160 d6126d6817e50e9a4e64088d212f8f39 134 Pfam PF01584 CheW-like domain 1 122 8.3E-9 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 Gene3D G3DSA:1.10.150.300 131 200 1.2E-23 T 23-04-2016 IPR023192 TGS-like domain NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 Pfam PF01926 50S ribosome-binding GTPase 5 126 8.3E-22 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 SUPERFAMILY SSF81271 279 360 1.57E-36 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 PANTHER PTHR23305 1 363 1.1E-200 T 23-04-2016 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 2.2E-40 T 23-04-2016 IPR013029 Domain of unknown function DUF933 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 SUPERFAMILY SSF52540 4 301 1.38E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 Gene3D G3DSA:3.40.50.300 201 266 8.3E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 Gene3D G3DSA:3.40.50.300 4 130 8.3E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.08E-32 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 1.08E-32 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.08E-32 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 1.08E-32 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.6E-149 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 Gene3D G3DSA:3.10.20.30 267 363 6.0E-51 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 42.466 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 NIDE_RS14520 886844ffadd7b17d0b7226fe7e9c2f86 363 PIRSF PIRSF006641 1 363 1.6E-152 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 NIDE_RS12645 54a60879d9b01c51ee6e0f17235f5e02 130 SUPERFAMILY SSF54211 7 130 5.69E-43 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS12645 54a60879d9b01c51ee6e0f17235f5e02 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 28.634 T 23-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid NIDE_RS12645 54a60879d9b01c51ee6e0f17235f5e02 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 23-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 NIDE_RS12645 54a60879d9b01c51ee6e0f17235f5e02 130 PANTHER PTHR21569 7 130 1.6E-58 T 23-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 NIDE_RS12645 54a60879d9b01c51ee6e0f17235f5e02 130 Gene3D G3DSA:3.30.230.10 6 130 8.9E-46 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS12645 54a60879d9b01c51ee6e0f17235f5e02 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 4.5E-43 T 23-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 PANTHER PTHR11405:SF47 3 1085 0.0 T 23-04-2016 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1078 12.881 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 SUPERFAMILY SSF48108 395 570 1.19E-41 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 PANTHER PTHR11405 3 1085 0.0 T 23-04-2016 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Gene3D G3DSA:3.40.50.20 4 108 1.1E-43 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 689 891 7.7E-38 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 2.4E-65 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Gene3D G3DSA:1.10.1030.10 399 555 3.3E-44 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Gene3D G3DSA:3.40.50.1380 954 1087 4.4E-39 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 SUPERFAMILY SSF52440 572 690 7.91E-50 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Gene3D G3DSA:3.30.1490.20 702 761 8.0E-26 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Gene3D G3DSA:3.30.1490.20 141 202 3.3E-19 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 434 563 1.9E-34 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 SMART SM01096 431 563 7.8E-52 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Pfam PF02142 MGS-like domain 972 1057 8.8E-20 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 SUPERFAMILY SSF56059 128 400 4.42E-107 T 23-04-2016 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 4.1E-64 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 4.1E-64 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 4.1E-64 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 4.1E-64 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 4.1E-64 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 4.1E-64 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 379 397 4.1E-64 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1085 13.521 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 SMART SM00851 971 1057 1.1E-28 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 SUPERFAMILY SSF52440 2 127 3.74E-49 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 SUPERFAMILY SSF52335 952 1087 5.1E-37 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Gene3D G3DSA:3.40.50.20 556 678 1.2E-62 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1066 0.0 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 SUPERFAMILY SSF56059 689 948 3.71E-102 T 23-04-2016 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Gene3D G3DSA:3.30.470.20 203 398 5.2E-77 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS11675 69e87f68339bd5a4ede5558fc80fd24b 1089 Gene3D G3DSA:3.30.470.20 762 950 1.2E-73 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 167 277 4.9E-22 T 23-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 PANTHER PTHR11811:SF28 1 297 1.1E-154 T 23-04-2016 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 SUPERFAMILY SSF51735 1 155 6.29E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 154 7.0E-42 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 23-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 PANTHER PTHR11811 1 297 1.1E-154 T 23-04-2016 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 296 3.2E-116 T 23-04-2016 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 Gene3D G3DSA:3.40.50.720 1 168 7.4E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 SUPERFAMILY SSF48179 165 296 6.33E-40 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 231 258 2.1E-27 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 156 184 2.1E-27 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 59 88 2.1E-27 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 21 2.1E-27 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 Gene3D G3DSA:1.10.1040.10 169 284 2.6E-34 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NIDE_RS10080 518b20961323eac5a4dfbd6b90f493b2 297 SMART SM01350 167 297 3.4E-5 T 23-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 Gene3D G3DSA:1.10.8.320 393 444 0.001 T 23-04-2016 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 502 8.2E-127 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 483 490 - T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 PRINTS PR00045 Sigma-54 factor signature 200 217 8.6E-25 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 PRINTS PR00045 Sigma-54 factor signature 478 496 8.6E-25 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 PRINTS PR00045 Sigma-54 factor signature 402 414 8.6E-25 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 PRINTS PR00045 Sigma-54 factor signature 418 429 8.6E-25 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 PANTHER PTHR32248 1 505 3.4E-141 T 23-04-2016 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 PANTHER PTHR32248:SF4 1 505 3.4E-141 T 23-04-2016 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 PIRSF PIRSF000774 1 505 6.3E-149 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 Pfam PF04552 Sigma-54, DNA binding domain 343 503 2.1E-57 T 23-04-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 390 409 - T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 Pfam PF04963 Sigma-54 factor, core binding domain 127 327 4.7E-57 T 23-04-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 NIDE_RS06225 05255a56b5f48a32cda268ef897f8627 505 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 49 2.9E-15 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04540 3cb3a1a47fda6bc1a0f938fa9a34100e 114 Gene3D G3DSA:3.30.428.10 2 114 1.1E-40 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 NIDE_RS04540 3cb3a1a47fda6bc1a0f938fa9a34100e 114 PANTHER PTHR23089 2 114 1.6E-49 T 23-04-2016 IPR001310 Histidine triad (HIT) protein NIDE_RS04540 3cb3a1a47fda6bc1a0f938fa9a34100e 114 PRINTS PR00332 Histidine triad family signature 94 104 1.3E-18 T 23-04-2016 IPR001310 Histidine triad (HIT) protein NIDE_RS04540 3cb3a1a47fda6bc1a0f938fa9a34100e 114 PRINTS PR00332 Histidine triad family signature 26 44 1.3E-18 T 23-04-2016 IPR001310 Histidine triad (HIT) protein NIDE_RS04540 3cb3a1a47fda6bc1a0f938fa9a34100e 114 PRINTS PR00332 Histidine triad family signature 5 21 1.3E-18 T 23-04-2016 IPR001310 Histidine triad (HIT) protein NIDE_RS04540 3cb3a1a47fda6bc1a0f938fa9a34100e 114 Pfam PF01230 HIT domain 13 109 1.6E-27 T 23-04-2016 IPR001310 Histidine triad (HIT) protein NIDE_RS04540 3cb3a1a47fda6bc1a0f938fa9a34100e 114 SUPERFAMILY SSF54197 2 113 7.58E-38 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 NIDE_RS04540 3cb3a1a47fda6bc1a0f938fa9a34100e 114 PANTHER PTHR23089:SF2 2 114 1.6E-49 T 23-04-2016 NIDE_RS04540 3cb3a1a47fda6bc1a0f938fa9a34100e 114 ProSitePatterns PS00892 HIT domain signature. 87 105 - T 23-04-2016 IPR019808 Histidine triad, conserved site NIDE_RS11140 394a13346fd20b8dd5faec76cc5d057f 385 SUPERFAMILY SSF53850 61 356 9.67E-49 T 23-04-2016 NIDE_RS11140 394a13346fd20b8dd5faec76cc5d057f 385 PANTHER PTHR30570:SF5 129 385 9.6E-49 T 23-04-2016 NIDE_RS11140 394a13346fd20b8dd5faec76cc5d057f 385 PANTHER PTHR30570:SF5 58 108 9.6E-49 T 23-04-2016 NIDE_RS11140 394a13346fd20b8dd5faec76cc5d057f 385 PANTHER PTHR30570 129 385 9.6E-49 T 23-04-2016 NIDE_RS11140 394a13346fd20b8dd5faec76cc5d057f 385 PANTHER PTHR30570 58 108 9.6E-49 T 23-04-2016 NIDE_RS11140 394a13346fd20b8dd5faec76cc5d057f 385 Gene3D G3DSA:3.40.190.10 165 308 3.5E-28 T 23-04-2016 NIDE_RS11140 394a13346fd20b8dd5faec76cc5d057f 385 Pfam PF12849 PBP superfamily domain 60 334 5.2E-24 T 23-04-2016 IPR024370 PBP domain NIDE_RS10750 39b14ee79c0ea4f57cd3ab68614ea636 203 Gene3D G3DSA:2.40.10.220 110 199 3.2E-8 T 23-04-2016 NIDE_RS10750 39b14ee79c0ea4f57cd3ab68614ea636 203 Pfam PF07238 PilZ domain 113 190 6.4E-10 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 SUPERFAMILY SSF55424 383 497 7.39E-33 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 Gene3D G3DSA:3.50.50.60 291 366 5.2E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 37 358 1.1E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PIRSF PIRSF000350 25 498 2.2E-95 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PANTHER PTHR22912:SF29 23 495 2.0E-201 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 70 85 4.4E-57 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 60 4.4E-57 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 338 345 4.4E-57 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 296 310 4.4E-57 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 379 400 4.4E-57 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 181 4.4E-57 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 466 486 4.4E-57 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 444 459 4.4E-57 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 208 233 4.4E-57 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 SUPERFAMILY SSF51905 28 404 1.7E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 Gene3D G3DSA:3.30.390.30 378 492 2.5E-35 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 383 489 1.8E-28 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 39 58 3.0E-26 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 3.0E-26 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 311 3.0E-26 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 323 345 3.0E-26 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 208 226 3.0E-26 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 71 81 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 Gene3D G3DSA:3.50.50.60 37 190 5.8E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 PANTHER PTHR22912 23 495 2.0E-201 T 23-04-2016 NIDE_RS05290 aebbba507c2a58112df4fd9bb7a9c0eb 517 Gene3D G3DSA:3.50.50.60 191 290 3.0E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS12740 daf727850547c468d6248a56063ed1ff 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 135 1.1E-29 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 NIDE_RS12740 daf727850547c468d6248a56063ed1ff 343 SUPERFAMILY SSF50129 1 171 5.78E-52 T 23-04-2016 IPR011032 GroES-like NIDE_RS12740 daf727850547c468d6248a56063ed1ff 343 Gene3D G3DSA:3.40.50.720 174 289 1.3E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12740 daf727850547c468d6248a56063ed1ff 343 SMART SM00829 10 340 8.6E-29 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 NIDE_RS12740 daf727850547c468d6248a56063ed1ff 343 PANTHER PTHR11695:SF605 15 343 1.8E-129 T 23-04-2016 NIDE_RS12740 daf727850547c468d6248a56063ed1ff 343 SUPERFAMILY SSF51735 142 318 2.63E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12740 daf727850547c468d6248a56063ed1ff 343 Pfam PF00107 Zinc-binding dehydrogenase 178 304 1.4E-39 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 NIDE_RS12740 daf727850547c468d6248a56063ed1ff 343 PANTHER PTHR11695 15 343 1.8E-129 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 NIDE_RS12740 daf727850547c468d6248a56063ed1ff 343 Gene3D G3DSA:3.90.180.10 1 173 3.6E-48 T 23-04-2016 IPR011032 GroES-like NIDE_RS00790 8eb8a0e309b9f74a177c11df6e175f22 491 Pfam PF13086 AAA domain 188 471 7.5E-7 T 23-04-2016 NIDE_RS00790 8eb8a0e309b9f74a177c11df6e175f22 491 Gene3D G3DSA:3.40.50.300 438 472 4.9E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00790 8eb8a0e309b9f74a177c11df6e175f22 491 Gene3D G3DSA:3.40.50.300 181 243 4.9E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01100 06db57c8629af9bafad114bb6504d4ff 123 Pfam PF00072 Response regulator receiver domain 4 118 1.4E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS01100 06db57c8629af9bafad114bb6504d4ff 123 SUPERFAMILY SSF52172 1 120 2.85E-31 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS01100 06db57c8629af9bafad114bb6504d4ff 123 Gene3D G3DSA:3.40.50.2300 2 120 6.3E-33 T 23-04-2016 NIDE_RS01100 06db57c8629af9bafad114bb6504d4ff 123 PANTHER PTHR26402 2 119 4.6E-29 T 23-04-2016 NIDE_RS01100 06db57c8629af9bafad114bb6504d4ff 123 SMART SM00448 2 117 1.4E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02680 baf1cc988a90bff7b385f36922e6a732 127 Pfam PF00072 Response regulator receiver domain 4 112 2.8E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02680 baf1cc988a90bff7b385f36922e6a732 127 PANTHER PTHR26402 2 119 1.5E-19 T 23-04-2016 NIDE_RS02680 baf1cc988a90bff7b385f36922e6a732 127 PANTHER PTHR26402:SF603 2 119 1.5E-19 T 23-04-2016 NIDE_RS02680 baf1cc988a90bff7b385f36922e6a732 127 SMART SM00448 2 115 7.6E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02680 baf1cc988a90bff7b385f36922e6a732 127 SUPERFAMILY SSF52172 4 120 1.39E-26 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS02680 baf1cc988a90bff7b385f36922e6a732 127 Gene3D G3DSA:3.40.50.2300 4 118 6.7E-25 T 23-04-2016 NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 PRINTS PR01950 LanC-like protein superfamily signature 707 720 3.2E-9 T 23-04-2016 IPR007822 Lanthionine synthetase C-like NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 PRINTS PR01950 LanC-like protein superfamily signature 543 558 3.2E-9 T 23-04-2016 IPR007822 Lanthionine synthetase C-like NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 PRINTS PR01950 LanC-like protein superfamily signature 663 683 3.2E-9 T 23-04-2016 IPR007822 Lanthionine synthetase C-like NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 PRINTS PR01950 LanC-like protein superfamily signature 602 618 3.2E-9 T 23-04-2016 IPR007822 Lanthionine synthetase C-like NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 Pfam PF00069 Protein kinase domain 251 389 4.2E-10 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 Pfam PF05147 Lanthionine synthetase C-like protein 459 721 9.8E-29 T 23-04-2016 IPR007822 Lanthionine synthetase C-like NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 SMART SM00220 157 395 1.6E-5 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 Gene3D G3DSA:1.10.510.10 249 390 2.4E-15 T 23-04-2016 NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 SMART SM01260 450 792 4.3E-8 T 23-04-2016 IPR007822 Lanthionine synthetase C-like NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 SUPERFAMILY SSF158745 455 781 3.01E-34 T 23-04-2016 NIDE_RS04240 46adcf645cf4ff3ba53167541cd81e22 823 SUPERFAMILY SSF56112 156 393 9.57E-20 T 23-04-2016 IPR011009 Protein kinase-like domain NIDE_RS16400 da015d39501d7ccdaa14dc8a9af8df8a 120 Gene3D G3DSA:3.30.300.90 39 119 2.4E-21 T 23-04-2016 IPR002634 BolA protein NIDE_RS16400 da015d39501d7ccdaa14dc8a9af8df8a 120 PANTHER PTHR12735:SF3 43 119 1.2E-13 T 23-04-2016 NIDE_RS16400 da015d39501d7ccdaa14dc8a9af8df8a 120 SUPERFAMILY SSF82657 25 119 4.84E-22 T 23-04-2016 IPR002634 BolA protein NIDE_RS16400 da015d39501d7ccdaa14dc8a9af8df8a 120 PANTHER PTHR12735 43 119 1.2E-13 T 23-04-2016 NIDE_RS16400 da015d39501d7ccdaa14dc8a9af8df8a 120 Pfam PF01722 BolA-like protein 65 117 1.6E-15 T 23-04-2016 IPR002634 BolA protein NIDE_RS09650 db67c9c14feb60661b17c5377e3024ed 289 SUPERFAMILY SSF52540 21 262 4.32E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09650 db67c9c14feb60661b17c5377e3024ed 289 PANTHER PTHR13696 20 271 7.0E-30 T 23-04-2016 NIDE_RS09650 db67c9c14feb60661b17c5377e3024ed 289 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 24 209 5.4E-14 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain NIDE_RS09650 db67c9c14feb60661b17c5377e3024ed 289 Gene3D G3DSA:3.40.50.300 21 260 1.2E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16605 c1d9d2942e687ebc919c570d4cc6e18b 184 SUPERFAMILY SSF52980 4 178 4.29E-70 T 23-04-2016 IPR011335 Restriction endonuclease type II-like NIDE_RS16605 c1d9d2942e687ebc919c570d4cc6e18b 184 PIRSF PIRSF011484 1 180 1.3E-69 T 23-04-2016 IPR009822 YaeQ NIDE_RS16605 c1d9d2942e687ebc919c570d4cc6e18b 184 Gene3D G3DSA:3.10.640.10 1 178 1.1E-77 T 23-04-2016 NIDE_RS16605 c1d9d2942e687ebc919c570d4cc6e18b 184 SMART SM01322 1 176 1.9E-108 T 23-04-2016 IPR009822 YaeQ NIDE_RS16605 c1d9d2942e687ebc919c570d4cc6e18b 184 PANTHER PTHR38784 1 182 2.7E-73 T 23-04-2016 NIDE_RS16605 c1d9d2942e687ebc919c570d4cc6e18b 184 Pfam PF07152 YaeQ protein 1 173 3.0E-74 T 23-04-2016 IPR009822 YaeQ NIDE_RS16605 c1d9d2942e687ebc919c570d4cc6e18b 184 PANTHER PTHR38784:SF1 1 182 2.7E-73 T 23-04-2016 NIDE_RS07945 e3271218a5bbf4f644dd1dd124dc2d3a 290 Pfam PF03099 Biotin/lipoate A/B protein ligase family 35 168 2.2E-17 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 NIDE_RS07945 e3271218a5bbf4f644dd1dd124dc2d3a 290 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 32 264 8.5E-49 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 NIDE_RS07945 e3271218a5bbf4f644dd1dd124dc2d3a 290 SUPERFAMILY SSF55681 19 230 1.37E-53 T 23-04-2016 NIDE_RS07945 e3271218a5bbf4f644dd1dd124dc2d3a 290 PANTHER PTHR12835 14 268 4.5E-66 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 NIDE_RS07945 e3271218a5bbf4f644dd1dd124dc2d3a 290 Gene3D G3DSA:3.30.930.10 20 231 2.8E-57 T 23-04-2016 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 Gene3D G3DSA:3.40.50.720 2 218 3.6E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 PANTHER PTHR11374 1 427 1.8E-229 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 PIRSF PIRSF000124 3 421 5.9E-57 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 PIRSF PIRSF500136 1 427 2.3E-148 T 23-04-2016 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 198 286 2.5E-23 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 SUPERFAMILY SSF51735 3 189 2.43E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 4 410 4.4E-117 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 313 414 5.3E-22 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 176 5.3E-33 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 SUPERFAMILY SSF52413 296 415 1.05E-27 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 SMART SM00984 313 415 7.8E-31 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 Gene3D G3DSA:3.40.50.720 228 418 4.1E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 PANTHER PTHR11374:SF25 1 427 1.8E-229 T 23-04-2016 NIDE_RS12995 6f5bf0dd11e7050a3c15692bd1461b01 427 SUPERFAMILY SSF48179 197 288 6.63E-24 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS06960 bfb4153243f235b301978700dcbe7964 266 SMART SM00028 150 183 110.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06960 bfb4153243f235b301978700dcbe7964 266 SMART SM00028 70 103 57.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06960 bfb4153243f235b301978700dcbe7964 266 SMART SM00028 30 63 150.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06960 bfb4153243f235b301978700dcbe7964 266 SMART SM00028 110 143 0.66 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06960 bfb4153243f235b301978700dcbe7964 266 SUPERFAMILY SSF48452 3 181 1.21E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS06960 bfb4153243f235b301978700dcbe7964 266 PANTHER PTHR10098:SF104 3 216 5.1E-20 T 23-04-2016 NIDE_RS06960 bfb4153243f235b301978700dcbe7964 266 PANTHER PTHR10098 3 216 5.1E-20 T 23-04-2016 NIDE_RS06960 bfb4153243f235b301978700dcbe7964 266 Pfam PF13424 Tetratricopeptide repeat 75 140 4.9E-10 T 23-04-2016 NIDE_RS06960 bfb4153243f235b301978700dcbe7964 266 Gene3D G3DSA:1.25.40.10 3 175 3.6E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS06960 bfb4153243f235b301978700dcbe7964 266 Gene3D G3DSA:1.25.40.10 176 249 1.2E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 ProSitePatterns PS01312 SecA family signature. 501 516 - T 23-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 Gene3D G3DSA:1.10.3060.10 657 841 1.5E-63 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 Pfam PF02810 SEC-C motif 883 900 1.1E-10 T 23-04-2016 IPR004027 SEC-C motif NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 SUPERFAMILY SSF52540 9 247 7.04E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 SUPERFAMILY SSF52540 369 416 7.04E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 Gene3D G3DSA:3.90.1440.10 249 369 7.4E-50 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 829 0.0 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 SUPERFAMILY SSF81767 246 369 7.72E-48 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 843 20.368 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 Pfam PF07516 SecA Wing and Scaffold domain 626 841 5.8E-75 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 SMART SM00958 247 359 4.1E-70 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 PRINTS PR00906 SecA protein signature 117 127 1.6E-57 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 PRINTS PR00906 SecA protein signature 101 115 1.6E-57 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 PRINTS PR00906 SecA protein signature 377 394 1.6E-57 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 PRINTS PR00906 SecA protein signature 414 427 1.6E-57 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 PRINTS PR00906 SecA protein signature 340 362 1.6E-57 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 PRINTS PR00906 SecA protein signature 63 87 1.6E-57 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 SUPERFAMILY SSF52540 418 627 1.83E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 Gene3D G3DSA:3.40.50.300 419 628 4.9E-95 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 SUPERFAMILY SSF81886 879 891 9.68E-80 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 SUPERFAMILY SSF81886 629 851 9.68E-80 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 PANTHER PTHR30612 178 521 0.0 T 23-04-2016 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 PANTHER PTHR30612 1 159 0.0 T 23-04-2016 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 PANTHER PTHR30612 559 901 0.0 T 23-04-2016 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 SMART SM00957 6 403 2.0E-282 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 Pfam PF01043 SecA preprotein cross-linking domain 251 359 6.8E-44 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 Gene3D G3DSA:3.40.50.300 370 417 3.5E-118 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 Gene3D G3DSA:3.40.50.300 3 247 3.5E-118 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02885 f6ef176b42b2c0d3d93b94f961c50c95 901 Pfam PF07517 SecA DEAD-like domain 8 402 1.6E-129 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 NIDE_RS13295 b8d857d77bb40c275a7025ef8cf0d860 515 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 17 506 8.2E-170 T 23-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 NIDE_RS13295 b8d857d77bb40c275a7025ef8cf0d860 515 Pfam PF08323 Starch synthase catalytic domain 17 266 2.9E-79 T 23-04-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 NIDE_RS13295 b8d857d77bb40c275a7025ef8cf0d860 515 Pfam PF00534 Glycosyl transferases group 1 320 477 1.4E-15 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS13295 b8d857d77bb40c275a7025ef8cf0d860 515 PANTHER PTHR12526:SF17 2 508 1.6E-143 T 23-04-2016 NIDE_RS13295 b8d857d77bb40c275a7025ef8cf0d860 515 Hamap MF_00484 Glycogen synthase [glgA]. 16 506 44.368 T 23-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 NIDE_RS13295 b8d857d77bb40c275a7025ef8cf0d860 515 SUPERFAMILY SSF53756 99 508 2.39E-119 T 23-04-2016 NIDE_RS13295 b8d857d77bb40c275a7025ef8cf0d860 515 SUPERFAMILY SSF53756 15 61 2.39E-119 T 23-04-2016 NIDE_RS13295 b8d857d77bb40c275a7025ef8cf0d860 515 PANTHER PTHR12526 2 508 1.6E-143 T 23-04-2016 NIDE_RS13295 b8d857d77bb40c275a7025ef8cf0d860 515 Gene3D G3DSA:3.40.50.2000 281 488 2.1E-73 T 23-04-2016 NIDE_RS13280 08ec83b33a77dda44b5f9a3dfcf74515 375 TIGRFAM TIGR03297 Ppyr-DeCO2ase: phosphonopyruvate decarboxylase 15 373 2.4E-149 T 23-04-2016 IPR017684 Phosphonopyruvate decarboxylase GO:0032923|GO:0033980 KEGG: 00440+4.1.1.82|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7510 NIDE_RS13280 08ec83b33a77dda44b5f9a3dfcf74515 375 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 243 262 - T 23-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 NIDE_RS13280 08ec83b33a77dda44b5f9a3dfcf74515 375 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 168 7.5E-16 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 NIDE_RS13280 08ec83b33a77dda44b5f9a3dfcf74515 375 PANTHER PTHR18968:SF81 120 375 2.7E-78 T 23-04-2016 NIDE_RS13280 08ec83b33a77dda44b5f9a3dfcf74515 375 Gene3D G3DSA:3.40.50.970 176 374 4.8E-36 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS13280 08ec83b33a77dda44b5f9a3dfcf74515 375 PANTHER PTHR18968 120 375 2.7E-78 T 23-04-2016 NIDE_RS13280 08ec83b33a77dda44b5f9a3dfcf74515 375 SUPERFAMILY SSF52518 7 168 6.38E-17 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS13280 08ec83b33a77dda44b5f9a3dfcf74515 375 Gene3D G3DSA:3.40.50.970 7 125 3.4E-11 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS13280 08ec83b33a77dda44b5f9a3dfcf74515 375 SUPERFAMILY SSF52518 180 371 7.33E-36 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS13280 08ec83b33a77dda44b5f9a3dfcf74515 375 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 213 345 1.0E-17 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 SUPERFAMILY SSF160246 254 307 4.18E-8 T 23-04-2016 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 SMART SM01231 315 378 8.1E-18 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 SMART SM00260 556 696 4.3E-37 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 SUPERFAMILY SSF47384 317 379 2.0E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 PANTHER PTHR22617 1 697 5.9E-233 T 23-04-2016 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 SMART SM00073 4 102 8.2E-30 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 Gene3D G3DSA:3.30.565.10 380 563 3.9E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 PANTHER PTHR22617:SF20 1 697 5.9E-233 T 23-04-2016 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 317 378 2.3E-16 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 Gene3D G3DSA:1.20.120.160 4 142 3.6E-44 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 SUPERFAMILY SSF47226 8 128 5.5E-33 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 561 9.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 482 9.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 518 9.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 542 9.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 SMART SM00387 423 564 4.8E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 426 563 6.0E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 SUPERFAMILY SSF50341 563 696 6.41E-30 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 Pfam PF01627 Hpt domain 10 96 1.7E-17 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 Gene3D G3DSA:2.30.30.40 652 695 2.9E-24 T 23-04-2016 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 Gene3D G3DSA:2.30.30.40 564 585 2.9E-24 T 23-04-2016 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 Gene3D G3DSA:2.40.50.180 588 651 2.5E-10 T 23-04-2016 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 SUPERFAMILY SSF55874 380 562 1.31E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 Pfam PF01584 CheW-like domain 569 697 4.5E-24 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10835 626780ed664e07069aa27a995e051c2c 707 Gene3D G3DSA:1.10.287.560 317 379 2.8E-20 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NIDE_RS13285 beb088d3a4bdc853bed5d07f21089b7f 544 SUPERFAMILY SSF51621 9 294 1.61E-78 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS13285 beb088d3a4bdc853bed5d07f21089b7f 544 Gene3D G3DSA:3.20.20.60 7 278 1.7E-72 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS13285 beb088d3a4bdc853bed5d07f21089b7f 544 SUPERFAMILY SSF53448 302 427 2.16E-25 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13285 beb088d3a4bdc853bed5d07f21089b7f 544 SUPERFAMILY SSF53448 470 542 2.16E-25 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13285 beb088d3a4bdc853bed5d07f21089b7f 544 PANTHER PTHR21631:SF23 1 417 4.5E-126 T 23-04-2016 NIDE_RS13285 beb088d3a4bdc853bed5d07f21089b7f 544 Gene3D G3DSA:3.90.550.10 301 543 4.5E-24 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13285 beb088d3a4bdc853bed5d07f21089b7f 544 Pfam PF13714 Phosphoenolpyruvate phosphomutase 13 258 2.5E-65 T 23-04-2016 NIDE_RS13285 beb088d3a4bdc853bed5d07f21089b7f 544 Pfam PF12804 MobA-like NTP transferase domain 303 425 2.6E-12 T 23-04-2016 IPR025877 MobA-like NTP transferase NIDE_RS13285 beb088d3a4bdc853bed5d07f21089b7f 544 PANTHER PTHR21631 1 417 4.5E-126 T 23-04-2016 NIDE_RS13285 beb088d3a4bdc853bed5d07f21089b7f 544 TIGRFAM TIGR02320 PEP_mutase: phosphoenolpyruvate mutase 13 283 1.2E-116 T 23-04-2016 IPR012698 Phosphoenolpyruvate phosphomutase, core GO:0050188 KEGG: 00440+5.4.2.9|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7419|MetaCyc: PWY-7510 NIDE_RS09870 7881442c91f57e079528e4091dee2f8d 253 SUPERFAMILY SSF53474 6 240 8.48E-48 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS09870 7881442c91f57e079528e4091dee2f8d 253 Gene3D G3DSA:3.40.50.1820 10 241 7.6E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS09870 7881442c91f57e079528e4091dee2f8d 253 SMART SM00824 Thioesterase 23 245 0.0079 T 23-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 NIDE_RS09870 7881442c91f57e079528e4091dee2f8d 253 Pfam PF00975 Thioesterase domain 21 240 2.8E-51 T 23-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 NIDE_RS09870 7881442c91f57e079528e4091dee2f8d 253 PANTHER PTHR11487 20 253 2.9E-83 T 23-04-2016 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS GO:0009058 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 SUPERFAMILY SSF54980 403 480 1.47E-24 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PANTHER PTHR23115 254 282 0.0 T 23-04-2016 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Gene3D G3DSA:3.30.70.240 598 684 1.1E-33 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Gene3D G3DSA:3.40.50.300 5 286 8.2E-105 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PANTHER PTHR23115:SF66 3 177 0.0 T 23-04-2016 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PANTHER PTHR23115:SF66 302 690 0.0 T 23-04-2016 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Gene3D G3DSA:3.30.70.870 405 478 2.0E-37 T 23-04-2016 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 SMART SM00889 479 597 1.1E-68 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 SUPERFAMILY SSF54211 478 598 2.15E-44 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Hamap MF_00054_B Elongation factor G [fusA]. 6 690 110.002 T 23-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 SMART SM00838 599 686 1.0E-55 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PANTHER PTHR23115 3 177 0.0 T 23-04-2016 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PANTHER PTHR23115 302 690 0.0 T 23-04-2016 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 SUPERFAMILY SSF54980 602 689 6.23E-30 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Pfam PF03144 Elongation factor Tu domain 2 323 390 8.7E-16 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.9E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.9E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PRINTS PR00315 GTP-binding elongation factor signature 130 139 1.9E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.9E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.9E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 PANTHER PTHR23115:SF66 254 282 0.0 T 23-04-2016 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Pfam PF14492 Elongation Factor G, domain II 403 477 2.3E-33 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 179 1.4E-34 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Gene3D G3DSA:2.40.30.10 304 404 1.7E-37 T 23-04-2016 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 690 0.0 T 23-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Pfam PF00009 Elongation factor Tu GTP binding domain 9 281 4.7E-69 T 23-04-2016 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Pfam PF03764 Elongation factor G, domain IV 478 596 6.4E-46 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 SUPERFAMILY SSF50447 264 403 8.33E-35 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Gene3D G3DSA:3.30.230.10 483 597 2.1E-50 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 SUPERFAMILY SSF52540 6 281 2.42E-109 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06055 008e0c49ff1d73459cf8d2fdda6139cb 693 Pfam PF00679 Elongation factor G C-terminus 599 685 2.5E-30 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 PANTHER PTHR24423 251 491 2.6E-105 T 23-04-2016 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 PANTHER PTHR24423 2 15 2.6E-105 T 23-04-2016 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 Pfam PF05227 CHASE3 domain 83 212 7.0E-22 T 23-04-2016 IPR007891 CHASE3 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 Gene3D G3DSA:1.10.287.130 266 336 1.6E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 Pfam PF00512 His Kinase A (phospho-acceptor) domain 274 338 1.3E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 381 493 2.5E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 SMART SM00388 272 340 1.6E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 Gene3D G3DSA:3.30.565.10 340 494 8.6E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 SUPERFAMILY SSF47384 256 340 8.44E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 435 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 478 491 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 472 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 PANTHER PTHR24423:SF383 251 491 2.6E-105 T 23-04-2016 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 PANTHER PTHR24423:SF383 2 15 2.6E-105 T 23-04-2016 NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 SUPERFAMILY SSF55874 329 493 1.05E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20115 40bb3feb82e405737bf7b33a061a9a0c 497 SMART SM00387 381 494 1.9E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20720 53ade4ce4556bd08b0647cf2017daf76 171 SUPERFAMILY SSF53756 1 167 4.19E-53 T 23-04-2016 NIDE_RS20720 53ade4ce4556bd08b0647cf2017daf76 171 PANTHER PTHR12526 1 168 1.4E-49 T 23-04-2016 NIDE_RS20720 53ade4ce4556bd08b0647cf2017daf76 171 Pfam PF00534 Glycosyl transferases group 1 1 148 2.0E-40 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS20720 53ade4ce4556bd08b0647cf2017daf76 171 Gene3D G3DSA:3.40.50.2000 2 148 1.3E-26 T 23-04-2016 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 SMART SM00028 379 412 160.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 SMART SM00028 107 140 0.38 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 SMART SM00028 147 180 0.28 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 SMART SM00028 339 372 340.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 SMART SM00028 187 220 28.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 Pfam PF13374 Tetratricopeptide repeat 186 216 0.0059 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 Pfam PF13424 Tetratricopeptide repeat 106 179 1.7E-9 T 23-04-2016 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 Gene3D G3DSA:1.25.40.10 132 268 5.4E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 Gene3D G3DSA:1.25.40.10 53 131 9.0E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 Gene3D G3DSA:1.25.40.10 342 408 5.4E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 SUPERFAMILY SSF48452 148 279 9.05E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 SUPERFAMILY SSF48452 317 423 6.75E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 PANTHER PTHR10098 97 412 3.7E-19 T 23-04-2016 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 PANTHER PTHR10098:SF104 97 412 3.7E-19 T 23-04-2016 NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 Pfam PF12770 CHAT domain 555 820 1.1E-47 T 23-04-2016 IPR024983 CHAT domain NIDE_RS14190 ebfd2ff84da7ce3b017900f46c34a8b5 824 SUPERFAMILY SSF48452 72 178 9.28E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08280 16a992162270b794507599d0a46d5e85 381 SUPERFAMILY SSF111369 78 309 1.07E-19 T 23-04-2016 NIDE_RS08280 16a992162270b794507599d0a46d5e85 381 Gene3D G3DSA:2.40.50.100 189 227 2.6E-12 T 23-04-2016 NIDE_RS08280 16a992162270b794507599d0a46d5e85 381 Gene3D G3DSA:2.40.50.100 74 108 2.6E-12 T 23-04-2016 NIDE_RS08280 16a992162270b794507599d0a46d5e85 381 PANTHER PTHR30097 50 376 1.2E-72 T 23-04-2016 NIDE_RS08280 16a992162270b794507599d0a46d5e85 381 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 78 376 3.0E-47 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS08280 16a992162270b794507599d0a46d5e85 381 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 302 6.5E-59 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS08280 16a992162270b794507599d0a46d5e85 381 PANTHER PTHR30097:SF4 50 376 1.2E-72 T 23-04-2016 NIDE_RS01520 7ccb83dbfd32cbcb06dd2f875cac737a 208 Pfam PF04367 Protein of unknown function (DUF502) 57 161 6.9E-23 T 23-04-2016 IPR007462 Protein of unknown function DUF502 NIDE_RS01520 7ccb83dbfd32cbcb06dd2f875cac737a 208 PANTHER PTHR31876:SF1 9 195 1.2E-32 T 23-04-2016 NIDE_RS01520 7ccb83dbfd32cbcb06dd2f875cac737a 208 PANTHER PTHR31876 9 195 1.2E-32 T 23-04-2016 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 7 476 32.616 T 23-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 SUPERFAMILY SSF116878 401 476 2.35E-44 T 23-04-2016 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 SUPERFAMILY SSF116878 142 241 2.35E-44 T 23-04-2016 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 Pfam PF01926 50S ribosome-binding GTPase 240 352 6.2E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 Gene3D G3DSA:3.30.1360.120 6 142 1.6E-41 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 238 392 6.4E-21 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 Pfam PF12631 MnmE helical domain 144 473 6.3E-52 T 23-04-2016 IPR025867 MnmE, helical domain NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 PANTHER PTHR11649 10 476 1.6E-145 T 23-04-2016 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 Gene3D G3DSA:1.20.120.430 407 476 3.0E-52 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 Gene3D G3DSA:1.20.120.430 268 292 3.0E-52 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 Gene3D G3DSA:1.20.120.430 143 203 3.0E-52 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 13 476 7.0E-105 T 23-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 Gene3D G3DSA:3.40.50.300 307 406 8.7E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 Pfam PF10396 GTP-binding protein TrmE N-terminus 8 141 1.4E-37 T 23-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 Gene3D G3DSA:3.40.50.300 221 267 7.1E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 SUPERFAMILY SSF52540 209 392 4.67E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 SUPERFAMILY SSF52540 93 173 4.67E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01655 c67f6a5fdaa60af7e6be25383744b267 476 PANTHER PTHR11649:SF56 10 476 1.6E-145 T 23-04-2016 NIDE_RS04975 965a93ef17305ab70895bc208eb07270 90 SUPERFAMILY SSF160766 10 88 9.81E-18 T 23-04-2016 IPR023122 NE1680-like domain NIDE_RS04975 965a93ef17305ab70895bc208eb07270 90 Pfam PF09630 Domain of unknown function (DUF2024) 10 88 2.1E-26 T 23-04-2016 IPR018592 Protein of unknown function DUF2024 NIDE_RS04975 965a93ef17305ab70895bc208eb07270 90 Gene3D G3DSA:3.10.510.10 9 88 4.9E-26 T 23-04-2016 IPR023122 NE1680-like domain NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 SUPERFAMILY SSF47384 418 485 9.61E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 SUPERFAMILY SSF55874 483 641 2.23E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 Gene3D G3DSA:3.30.450.20 304 409 3.3E-27 T 23-04-2016 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 PANTHER PTHR24423 294 641 7.2E-72 T 23-04-2016 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 PANTHER PTHR24423 29 133 7.2E-72 T 23-04-2016 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 Pfam PF13426 PAS domain 71 117 1.3 T 23-04-2016 IPR000014 PAS domain NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 Gene3D G3DSA:1.10.287.130 420 481 0.001 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 SMART SM00091 296 362 1.4E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 537 642 5.3E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 SUPERFAMILY SSF55785 307 418 2.42E-27 T 23-04-2016 IPR000014 PAS domain NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 294 417 3.3E-24 T 23-04-2016 IPR000014 PAS domain NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 601 3.3E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 PRINTS PR00344 Bacterial sensor protein C-terminal signature 573 587 3.3E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 PRINTS PR00344 Bacterial sensor protein C-terminal signature 603 621 3.3E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 PRINTS PR00344 Bacterial sensor protein C-terminal signature 627 640 3.3E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 SMART SM00086 78 118 23.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 SMART SM00086 368 410 4.9E-6 T 23-04-2016 IPR001610 PAC motif NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 SUPERFAMILY SSF55781 113 287 2.36E-25 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 Gene3D G3DSA:3.30.565.10 495 642 4.2E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 SMART SM00065 147 295 5.5E-14 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 Gene3D G3DSA:3.30.450.40 125 293 2.1E-39 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 SMART SM00387 533 643 9.6E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 Pfam PF01590 GAF domain 149 283 3.5E-14 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS08140 1831b4c28e0f2570ef33a01c58828fd2 645 Pfam PF00989 PAS fold 297 406 1.9E-16 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS14610 8520e2eb2c3eae01ead4dd30eb13a30b 721 Pfam PF06202 Amylo-alpha-1,6-glucosidase 281 645 9.6E-11 T 23-04-2016 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25+3.2.1.33|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NIDE_RS14610 8520e2eb2c3eae01ead4dd30eb13a30b 721 SUPERFAMILY SSF48208 244 714 1.46E-91 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS14610 8520e2eb2c3eae01ead4dd30eb13a30b 721 PANTHER PTHR10569:SF1 348 665 5.5E-155 T 23-04-2016 NIDE_RS14610 8520e2eb2c3eae01ead4dd30eb13a30b 721 PANTHER PTHR10569:SF1 257 328 5.5E-155 T 23-04-2016 NIDE_RS14610 8520e2eb2c3eae01ead4dd30eb13a30b 721 PANTHER PTHR10569 348 665 5.5E-155 T 23-04-2016 IPR010401 Glycogen debranching enzyme GO:0004134|GO:0004135|GO:0005980 KEGG: 00500+3.2.1.33+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NIDE_RS14610 8520e2eb2c3eae01ead4dd30eb13a30b 721 PANTHER PTHR10569 257 328 5.5E-155 T 23-04-2016 IPR010401 Glycogen debranching enzyme GO:0004134|GO:0004135|GO:0005980 KEGG: 00500+3.2.1.33+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NIDE_RS14610 8520e2eb2c3eae01ead4dd30eb13a30b 721 Pfam PF14742 N-terminal domain of (some) glycogen debranching enzymes 27 218 1.3E-58 T 23-04-2016 IPR032856 Putative glycogen debranching enzyme, N-terminal NIDE_RS05275 402d44f66c5a8b872b65c9c16d72795b 373 PANTHER PTHR13794 12 363 4.2E-90 T 23-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 NIDE_RS05275 402d44f66c5a8b872b65c9c16d72795b 373 SMART SM00922 151 248 4.7E-20 T 23-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal NIDE_RS05275 402d44f66c5a8b872b65c9c16d72795b 373 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 17 133 1.1E-12 T 23-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain NIDE_RS05275 402d44f66c5a8b872b65c9c16d72795b 373 SUPERFAMILY SSF51604 123 359 4.45E-52 T 23-04-2016 IPR029065 Enolase C-terminal domain-like NIDE_RS05275 402d44f66c5a8b872b65c9c16d72795b 373 Pfam PF13378 Enolase C-terminal domain-like 156 332 2.9E-32 T 23-04-2016 IPR029065 Enolase C-terminal domain-like NIDE_RS05275 402d44f66c5a8b872b65c9c16d72795b 373 Gene3D G3DSA:3.20.20.120 131 359 4.2E-57 T 23-04-2016 IPR029065 Enolase C-terminal domain-like NIDE_RS05275 402d44f66c5a8b872b65c9c16d72795b 373 PANTHER PTHR13794:SF55 12 363 4.2E-90 T 23-04-2016 NIDE_RS05275 402d44f66c5a8b872b65c9c16d72795b 373 SUPERFAMILY SSF54826 13 133 2.21E-25 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NIDE_RS05275 402d44f66c5a8b872b65c9c16d72795b 373 Gene3D G3DSA:3.30.390.10 13 130 5.0E-31 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NIDE_RS19515 8eb0264153b622414e2fcfa94fac1856 478 Gene3D G3DSA:3.30.830.10 37 257 3.0E-39 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS19515 8eb0264153b622414e2fcfa94fac1856 478 Gene3D G3DSA:3.30.830.10 274 454 1.4E-30 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS19515 8eb0264153b622414e2fcfa94fac1856 478 SUPERFAMILY SSF63411 267 457 1.45E-43 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS19515 8eb0264153b622414e2fcfa94fac1856 478 Pfam PF00675 Insulinase (Peptidase family M16) 56 177 5.0E-7 T 23-04-2016 IPR011765 Peptidase M16, N-terminal NIDE_RS19515 8eb0264153b622414e2fcfa94fac1856 478 PANTHER PTHR11851:SF140 6 463 9.1E-93 T 23-04-2016 NIDE_RS19515 8eb0264153b622414e2fcfa94fac1856 478 Pfam PF05193 Peptidase M16 inactive domain 209 388 1.1E-29 T 23-04-2016 IPR007863 Peptidase M16, C-terminal NIDE_RS19515 8eb0264153b622414e2fcfa94fac1856 478 SUPERFAMILY SSF63411 36 261 1.36E-43 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS19515 8eb0264153b622414e2fcfa94fac1856 478 PANTHER PTHR11851 6 463 9.1E-93 T 23-04-2016 NIDE_RS11885 746d1099ca136a96e6cf269eb672b743 155 PANTHER PTHR11102 11 20 2.6E-17 T 23-04-2016 NIDE_RS11885 746d1099ca136a96e6cf269eb672b743 155 PANTHER PTHR11102 46 128 2.6E-17 T 23-04-2016 NIDE_RS11885 746d1099ca136a96e6cf269eb672b743 155 Gene3D G3DSA:1.25.40.10 39 135 7.5E-23 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11885 746d1099ca136a96e6cf269eb672b743 155 Pfam PF08238 Sel1 repeat 89 122 6.1E-8 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS11885 746d1099ca136a96e6cf269eb672b743 155 Pfam PF08238 Sel1 repeat 52 86 3.3E-8 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS11885 746d1099ca136a96e6cf269eb672b743 155 SUPERFAMILY SSF81901 42 127 1.16E-19 T 23-04-2016 NIDE_RS11885 746d1099ca136a96e6cf269eb672b743 155 SMART SM00671 87 122 1.3E-6 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS11885 746d1099ca136a96e6cf269eb672b743 155 SMART SM00671 51 86 4.8E-7 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS20640 14aebff1f34368676b9fc2c22e01dd75 335 PANTHER PTHR22916 7 261 5.6E-47 T 23-04-2016 NIDE_RS20640 14aebff1f34368676b9fc2c22e01dd75 335 Gene3D G3DSA:3.90.550.10 9 220 2.9E-48 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20640 14aebff1f34368676b9fc2c22e01dd75 335 Pfam PF00535 Glycosyl transferase family 2 11 137 2.3E-31 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS20640 14aebff1f34368676b9fc2c22e01dd75 335 SUPERFAMILY SSF53448 8 216 4.69E-50 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS16390 01d7f0313cc8514b8d69085aff24d466 478 PANTHER PTHR11048 190 476 1.8E-33 T 23-04-2016 NIDE_RS16390 01d7f0313cc8514b8d69085aff24d466 478 SUPERFAMILY SSF56784 3 167 1.4E-15 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS16390 01d7f0313cc8514b8d69085aff24d466 478 Pfam PF12710 haloacid dehalogenase-like hydrolase 13 152 1.3E-8 T 23-04-2016 NIDE_RS16390 01d7f0313cc8514b8d69085aff24d466 478 PANTHER PTHR11048:SF5 190 476 1.8E-33 T 23-04-2016 NIDE_RS16390 01d7f0313cc8514b8d69085aff24d466 478 Pfam PF01040 UbiA prenyltransferase family 212 455 9.4E-21 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 NIDE_RS16390 01d7f0313cc8514b8d69085aff24d466 478 Gene3D G3DSA:3.40.50.1000 11 21 4.4E-8 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS16390 01d7f0313cc8514b8d69085aff24d466 478 Gene3D G3DSA:3.40.50.1000 60 173 4.4E-8 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 SUPERFAMILY SSF82693 810 860 5.75E-24 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 SUPERFAMILY SSF82693 671 720 5.75E-24 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 Gene3D G3DSA:1.10.3850.10 816 1030 3.0E-58 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 Gene3D G3DSA:1.10.3850.10 282 500 2.0E-64 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 SUPERFAMILY SSF82693 39 131 3.35E-24 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PANTHER PTHR32063 2 1056 0.0 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 Pfam PF00873 AcrB/AcrD/AcrF family 2 1030 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 Gene3D G3DSA:3.30.2090.10 183 277 7.3E-23 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 3.2E-101 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 3.2E-101 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 3.2E-101 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 3.2E-101 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 3.2E-101 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 3.2E-101 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 3.2E-101 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 3.2E-101 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 3.2E-101 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 SUPERFAMILY SSF82693 564 670 7.32E-28 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 PANTHER PTHR32063:SF11 2 1056 0.0 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1044 0.0 T 23-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 SUPERFAMILY SSF82714 721 809 2.09E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 SUPERFAMILY SSF82866 833 1029 1.96E-46 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 Gene3D G3DSA:3.30.70.1430 566 670 2.9E-31 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 SUPERFAMILY SSF82714 184 274 4.19E-19 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 SUPERFAMILY SSF82693 137 183 1.03E-23 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 SUPERFAMILY SSF82693 276 332 1.03E-23 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 SUPERFAMILY SSF82866 298 499 3.92E-53 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 Gene3D G3DSA:3.30.70.1430 39 138 2.7E-29 T 23-04-2016 NIDE_RS15895 161f0d516ea6abe9105be0cf3e121c48 1059 Gene3D G3DSA:3.30.2090.10 726 810 6.6E-19 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 Pfam PF00270 DEAD/DEAH box helicase 9 166 9.3E-7 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 SMART SM00847 390 480 2.3E-14 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 PIRSF PIRSF005496 1 832 0.0 T 23-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 SMART SM00490 227 330 4.9E-18 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 SMART SM00487 5 187 2.1E-11 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 Pfam PF08482 ATP-dependent helicase C-terminal 687 819 3.2E-56 T 23-04-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 Pfam PF00271 Helicase conserved C-terminal domain 210 329 2.8E-13 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 SUPERFAMILY SSF52540 18 340 2.65E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 PANTHER PTHR18934 3 451 2.2E-142 T 23-04-2016 NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 4 832 0.0 T 23-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 Gene3D G3DSA:3.40.50.300 201 345 8.4E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 Pfam PF04408 Helicase associated domain (HA2) 391 472 3.2E-15 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 NIDE_RS11870 70aff830d2f5be591344ae2b94a7adf3 832 Gene3D G3DSA:3.40.50.300 3 161 2.9E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 SUPERFAMILY SSF50447 523 605 4.47E-23 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 Pfam PF00009 Elongation factor Tu GTP binding domain 355 511 7.7E-32 T 23-04-2016 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 353 509 2.2E-35 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 1 849 17.33 T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 Gene3D G3DSA:2.40.30.10 522 615 3.6E-21 T 23-04-2016 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 49 3.5E-14 T 23-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 274 323 2.4E-11 T 23-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 266 848 4.8E-251 T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 Gene3D G3DSA:3.40.50.10050 651 729 1.2E-23 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 Pfam PF11987 Translation-initiation factor 2 636 739 5.2E-35 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 PANTHER PTHR23115 703 847 1.0E-196 T 23-04-2016 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 PANTHER PTHR23115 333 669 1.0E-196 T 23-04-2016 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 ProSitePatterns PS01176 Initiation factor 2 signature. 802 824 - T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 PANTHER PTHR23115:SF184 703 847 1.0E-196 T 23-04-2016 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 PANTHER PTHR23115:SF184 333 669 1.0E-196 T 23-04-2016 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 SUPERFAMILY SSF52540 348 523 4.22E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 SUPERFAMILY SSF50447 752 845 9.03E-29 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 Gene3D G3DSA:3.40.50.300 349 510 1.1E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 Gene3D G3DSA:2.40.30.10 752 847 7.9E-36 T 23-04-2016 NIDE_RS18845 160a58b0b433840169bfd849c41c63d5 865 SUPERFAMILY SSF52156 631 757 1.7E-34 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 NIDE_RS07695 60d105e7412ce80b738a446c37838ecc 240 Gene3D G3DSA:3.30.1330.30 2 74 1.4E-9 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like NIDE_RS07695 60d105e7412ce80b738a446c37838ecc 240 PANTHER PTHR12029 1 230 8.2E-43 T 23-04-2016 NIDE_RS07695 60d105e7412ce80b738a446c37838ecc 240 SMART SM00967 1 77 3.8E-8 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 NIDE_RS07695 60d105e7412ce80b738a446c37838ecc 240 Pfam PF00588 SpoU rRNA Methylase family 94 228 2.0E-28 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 NIDE_RS07695 60d105e7412ce80b738a446c37838ecc 240 Gene3D G3DSA:3.40.1280.10 91 230 2.1E-36 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIDE_RS07695 60d105e7412ce80b738a446c37838ecc 240 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 2 74 7.9E-9 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 NIDE_RS07695 60d105e7412ce80b738a446c37838ecc 240 SUPERFAMILY SSF75217 94 230 7.19E-30 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases NIDE_RS07695 60d105e7412ce80b738a446c37838ecc 240 SUPERFAMILY SSF55315 2 75 2.94E-8 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like NIDE_RS19945 ea4b777e43b9bacf3b8a625279b5dbb0 290 Gene3D G3DSA:3.40.50.720 4 227 9.1E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19945 ea4b777e43b9bacf3b8a625279b5dbb0 290 PANTHER PTHR10491 1 287 3.5E-73 T 23-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family NIDE_RS19945 ea4b777e43b9bacf3b8a625279b5dbb0 290 Pfam PF04321 RmlD substrate binding domain 4 275 6.2E-54 T 23-04-2016 IPR029903 RmlD-like substrate binding domain NIDE_RS19945 ea4b777e43b9bacf3b8a625279b5dbb0 290 SUPERFAMILY SSF51735 4 276 9.38E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS18110 0bd86c9e37bffda8a617f35c8d620374 197 PANTHER PTHR40438 3 177 2.4E-36 T 23-04-2016 NIDE_RS18110 0bd86c9e37bffda8a617f35c8d620374 197 Gene3D G3DSA:3.50.20.10 6 185 8.2E-55 T 23-04-2016 IPR016105 Pyruvoyl-dependent histidine/arginine decarboxylase, 3-layer sandwich domain GO:0006520|GO:0016831 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NIDE_RS18110 0bd86c9e37bffda8a617f35c8d620374 197 Hamap MF_01404 Pyruvoyl-dependent arginine decarboxylase [pdaD]. 1 191 80.157 T 23-04-2016 IPR002724 Pyruvoyl-dependent arginine decarboxylase GO:0006527|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NIDE_RS18110 0bd86c9e37bffda8a617f35c8d620374 197 PANTHER PTHR40438:SF1 3 177 2.4E-36 T 23-04-2016 NIDE_RS18110 0bd86c9e37bffda8a617f35c8d620374 197 PIRSF PIRSF005216 5 185 1.7E-59 T 23-04-2016 IPR002724 Pyruvoyl-dependent arginine decarboxylase GO:0006527|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NIDE_RS18110 0bd86c9e37bffda8a617f35c8d620374 197 SUPERFAMILY SSF56271 5 169 2.88E-45 T 23-04-2016 IPR016104 Pyruvoyl-dependent histidine/arginine decarboxylase GO:0006520|GO:0016831 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NIDE_RS18110 0bd86c9e37bffda8a617f35c8d620374 197 Pfam PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) 8 184 5.2E-59 T 23-04-2016 IPR002724 Pyruvoyl-dependent arginine decarboxylase GO:0006527|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NIDE_RS18110 0bd86c9e37bffda8a617f35c8d620374 197 ProDom PD010449 DECARBOXYLASE PYRUVOYL-DEPENDENT ARGININE SUBUNIT ALPHA CONTAINS: BETA PVLARGDC LYA DECARBOX 9 106 6.0E-29 T 23-04-2016 IPR002724 Pyruvoyl-dependent arginine decarboxylase GO:0006527|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NIDE_RS18110 0bd86c9e37bffda8a617f35c8d620374 197 TIGRFAM TIGR00286 TIGR00286: arginine decarboxylase, pyruvoyl-dependent 8 155 2.0E-36 T 23-04-2016 IPR002724 Pyruvoyl-dependent arginine decarboxylase GO:0006527|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 NIDE_RS01440 4858bbd26ce115d84f79589e31d5786a 328 PANTHER PTHR12304 5 326 1.5E-93 T 23-04-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase NIDE_RS01440 4858bbd26ce115d84f79589e31d5786a 328 Gene3D G3DSA:3.90.245.10 6 326 5.1E-99 T 23-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain NIDE_RS01440 4858bbd26ce115d84f79589e31d5786a 328 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 8 318 4.2E-67 T 23-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain NIDE_RS01440 4858bbd26ce115d84f79589e31d5786a 328 SUPERFAMILY SSF53590 6 326 3.27E-87 T 23-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain NIDE_RS01440 4858bbd26ce115d84f79589e31d5786a 328 PANTHER PTHR12304:SF4 5 326 1.5E-93 T 23-04-2016 NIDE_RS04600 8051cda61c531d3c27db6b835cb3fd70 216 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 38 213 1.3E-53 T 23-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 NIDE_RS04600 8051cda61c531d3c27db6b835cb3fd70 216 Pfam PF02666 Phosphatidylserine decarboxylase 43 212 2.0E-31 T 23-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 NIDE_RS04600 8051cda61c531d3c27db6b835cb3fd70 216 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 9 216 33.993 T 23-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 NIDE_RS04600 8051cda61c531d3c27db6b835cb3fd70 216 PANTHER PTHR35809 2 216 1.2E-63 T 23-04-2016 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 SUPERFAMILY SSF53790 3 259 1.83E-81 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 11 25 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 8 219 4.4E-49 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 Gene3D G3DSA:3.40.1010.10 6 121 1.3E-44 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 86 119 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 SUPERFAMILY SSF69618 256 506 1.03E-76 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 Gene3D G3DSA:3.30.950.10 122 261 5.4E-56 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 Gene3D G3DSA:3.40.50.10090 262 378 4.0E-39 T 23-04-2016 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 Gene3D G3DSA:3.40.50.10090 379 506 5.1E-34 T 23-04-2016 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 Pfam PF02602 Uroporphyrinogen-III synthase HemD 270 500 1.9E-68 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 PANTHER PTHR21091:SF16 1 240 1.6E-79 T 23-04-2016 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 PANTHER PTHR21091 1 240 1.6E-79 T 23-04-2016 NIDE_RS12585 8c28b57648688bd0e31eba40be57aff5 521 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 6 243 3.1E-94 T 23-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 NIDE_RS20790 b94cdfb2bc80a6823a4d018db1579b32 163 Gene3D G3DSA:1.10.10.10 28 159 1.2E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS20790 b94cdfb2bc80a6823a4d018db1579b32 163 SUPERFAMILY SSF46785 23 162 2.66E-30 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS20790 b94cdfb2bc80a6823a4d018db1579b32 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 107 123 6.8E-11 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS20790 b94cdfb2bc80a6823a4d018db1579b32 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 137 157 6.8E-11 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS20790 b94cdfb2bc80a6823a4d018db1579b32 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 103 6.8E-11 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS20790 b94cdfb2bc80a6823a4d018db1579b32 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 87 6.8E-11 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS20790 b94cdfb2bc80a6823a4d018db1579b32 163 PANTHER PTHR33164 29 162 6.5E-21 T 23-04-2016 NIDE_RS20790 b94cdfb2bc80a6823a4d018db1579b32 163 Pfam PF01047 MarR family 54 111 1.7E-14 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS20790 b94cdfb2bc80a6823a4d018db1579b32 163 SMART SM00347 47 147 3.2E-20 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PANTHER PTHR34217:SF1 1 507 1.6E-228 T 23-04-2016 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PANTHER PTHR34217 1 507 1.6E-228 T 23-04-2016 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 SUPERFAMILY SSF55486 9 501 6.96E-115 T 23-04-2016 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PIRSF PIRSF006615 3 507 7.9E-180 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 408 429 5.6E-69 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 234 250 5.6E-69 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 385 402 5.6E-69 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 271 290 5.6E-69 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 453 471 5.6E-69 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 251 270 5.6E-69 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 298 314 5.6E-69 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 154 174 5.6E-69 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 339 358 5.6E-69 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS04805 a33a2fa759ccb01a5edb88566ea3697f 507 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 17 501 1.1E-113 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 97 134 1.8E-14 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 PANTHER PTHR11615 334 446 3.5E-116 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 PANTHER PTHR11615 17 301 3.5E-116 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 PANTHER PTHR11615 544 900 3.5E-116 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 SMART SM00929 97 137 5.5E-12 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 228 291 8.1E-10 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Gene3D G3DSA:2.20.25.90 238 293 1.1E-17 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 SUPERFAMILY SSF50692 784 900 1.33E-25 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 SUPERFAMILY SSF54292 16 134 9.97E-28 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Gene3D G3DSA:2.40.40.20 788 900 1.8E-24 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Pfam PF00384 Molybdopterin oxidoreductase 295 718 1.4E-57 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Gene3D G3DSA:3.40.228.10 370 548 3.2E-38 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Gene3D G3DSA:3.40.50.740 295 367 6.8E-69 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Gene3D G3DSA:3.40.50.740 606 745 6.8E-69 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Gene3D G3DSA:3.40.50.740 549 572 6.8E-69 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Gene3D G3DSA:3.10.20.30 11 69 5.2E-5 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Pfam PF01568 Molydopterin dinucleotide binding domain 791 893 1.4E-16 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 199 210 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 SUPERFAMILY SSF54862 92 217 2.09E-26 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 SUPERFAMILY SSF53706 221 752 2.75E-144 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Gene3D G3DSA:3.30.70.20 210 237 2.9E-4 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Gene3D G3DSA:3.30.70.20 115 209 3.1E-11 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 PANTHER PTHR11615:SF38 334 446 3.5E-116 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 PANTHER PTHR11615:SF38 17 301 3.5E-116 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 PANTHER PTHR11615:SF38 544 900 3.5E-116 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 14 89 1.2E-13 T 23-04-2016 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 SMART SM00926 228 292 1.6E-11 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 NIDE_RS01060 b78521686c87e78f823d3a1e81ed3673 902 PIRSF PIRSF036643 11 902 1.2E-221 T 23-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 NIDE_RS12055 04b343f550e18aec87aa832a46a6b742 653 Gene3D G3DSA:2.40.10.10 190 299 1.7E-18 T 23-04-2016 NIDE_RS12055 04b343f550e18aec87aa832a46a6b742 653 SUPERFAMILY SSF50494 111 296 2.34E-15 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS12055 04b343f550e18aec87aa832a46a6b742 653 SUPERFAMILY SSF69318 438 648 2.75E-10 T 23-04-2016 NIDE_RS07035 831d479fc716c672f6a0ade2cacf43db 235 SUPERFAMILY SSF56784 5 217 4.82E-49 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS07035 831d479fc716c672f6a0ade2cacf43db 235 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 73 195 8.4E-13 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS07035 831d479fc716c672f6a0ade2cacf43db 235 Gene3D G3DSA:1.10.150.240 18 88 6.2E-5 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 NIDE_RS07035 831d479fc716c672f6a0ade2cacf43db 235 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 196 1.9E-32 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS07035 831d479fc716c672f6a0ade2cacf43db 235 Gene3D G3DSA:3.40.50.1000 94 218 4.8E-41 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS07035 831d479fc716c672f6a0ade2cacf43db 235 Gene3D G3DSA:3.40.50.1000 2 17 4.8E-41 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS07035 831d479fc716c672f6a0ade2cacf43db 235 PANTHER PTHR18901 1 217 1.2E-51 T 23-04-2016 NIDE_RS08805 f16c7c85b96c80c987f1740e5e3ca4ac 287 Pfam PF00582 Universal stress protein family 2 139 8.2E-24 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS08805 f16c7c85b96c80c987f1740e5e3ca4ac 287 Pfam PF00582 Universal stress protein family 149 285 1.3E-21 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS08805 f16c7c85b96c80c987f1740e5e3ca4ac 287 PRINTS PR01438 Universal stress protein signature 148 166 2.8E-13 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS08805 f16c7c85b96c80c987f1740e5e3ca4ac 287 PRINTS PR01438 Universal stress protein signature 265 287 2.8E-13 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS08805 f16c7c85b96c80c987f1740e5e3ca4ac 287 PRINTS PR01438 Universal stress protein signature 247 259 2.8E-13 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS08805 f16c7c85b96c80c987f1740e5e3ca4ac 287 SUPERFAMILY SSF52402 1 140 4.86E-27 T 23-04-2016 NIDE_RS08805 f16c7c85b96c80c987f1740e5e3ca4ac 287 Gene3D G3DSA:3.40.50.620 147 285 2.0E-26 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS08805 f16c7c85b96c80c987f1740e5e3ca4ac 287 PANTHER PTHR31964 1 136 3.5E-23 T 23-04-2016 NIDE_RS08805 f16c7c85b96c80c987f1740e5e3ca4ac 287 SUPERFAMILY SSF52402 148 286 7.53E-25 T 23-04-2016 NIDE_RS08805 f16c7c85b96c80c987f1740e5e3ca4ac 287 Gene3D G3DSA:3.40.50.620 2 140 1.8E-28 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Gene3D G3DSA:3.90.199.10 29 234 4.5E-118 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Gene3D G3DSA:3.90.199.10 333 397 4.5E-118 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Gene3D G3DSA:3.30.1360.40 235 332 2.6E-37 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 PANTHER PTHR10169:SF48 4 776 0.0 T 23-04-2016 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 2 811 29.663 T 23-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 9 807 0.0 T 23-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 SMART SM00434 10 464 2.4E-282 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 SUPERFAMILY SSF101904 498 812 6.02E-108 T 23-04-2016 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 PANTHER PTHR10169 4 776 0.0 T 23-04-2016 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 711 751 2.1E-12 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 553 602 3.0E-11 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 611 653 5.4E-7 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 760 806 9.7E-13 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 658 703 4.4E-14 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 505 548 1.1E-10 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 SUPERFAMILY SSF56719 29 487 1.14E-179 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 31 471 3.1E-159 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00020 fa81c194bb060d4bd5201ac8c1bed9f4 820 Gene3D G3DSA:2.120.10.90 496 806 4.3E-129 T 23-04-2016 NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 PANTHER PTHR30195 110 467 7.3E-93 T 23-04-2016 NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 Gene3D G3DSA:3.40.50.150 187 448 5.8E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 303 315 3.5E-13 T 23-04-2016 NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 185 201 3.5E-13 T 23-04-2016 NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 212 226 3.5E-13 T 23-04-2016 NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 Pfam PF12161 HsdM N-terminal domain 13 148 1.2E-14 T 23-04-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 Pfam PF02384 N-6 DNA Methylase 165 470 1.6E-56 T 23-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 PANTHER PTHR30195:SF10 110 467 7.3E-93 T 23-04-2016 NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 306 312 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 SUPERFAMILY SSF53335 84 499 9.04E-101 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 SUPERFAMILY SSF53335 615 656 9.04E-101 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS11470 7e7aa7a571f952f4e7b75ee73e10a415 658 SUPERFAMILY SSF53335 12 50 9.04E-101 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 414 431 7.6E-6 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 431 451 7.6E-6 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 Pfam PF00072 Response regulator receiver domain 9 108 2.0E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 SMART SM00382 166 309 2.6E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 Pfam PF00158 Sigma-54 interaction domain 148 312 1.8E-66 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 SUPERFAMILY SSF52172 3 191 1.15E-38 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 Pfam PF02954 Bacterial regulatory protein, Fis family 408 448 1.9E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 SUPERFAMILY SSF52540 148 388 1.25E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 Gene3D G3DSA:1.10.10.60 391 448 7.2E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 Gene3D G3DSA:1.10.8.60 319 390 4.4E-21 T 23-04-2016 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 SUPERFAMILY SSF46689 357 448 5.82E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 SMART SM00448 6 119 6.1E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 Gene3D G3DSA:3.40.50.300 148 318 1.9E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 Gene3D G3DSA:3.40.50.2300 6 132 1.3E-32 T 23-04-2016 NIDE_RS14490 500dec9a0addbef5d18be8f2b852ef52 456 PANTHER PTHR32071 1 449 5.5E-176 T 23-04-2016 NIDE_RS09565 8ecf043399c73aa72c6eb703448de0a0 368 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 13 363 28.044 T 23-04-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS09565 8ecf043399c73aa72c6eb703448de0a0 368 PIRSF PIRSF026782 9 368 1.4E-116 T 23-04-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS09565 8ecf043399c73aa72c6eb703448de0a0 368 PANTHER PTHR35863:SF1 2 368 2.0E-112 T 23-04-2016 NIDE_RS09565 8ecf043399c73aa72c6eb703448de0a0 368 SUPERFAMILY SSF111342 7 289 3.92E-79 T 23-04-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS09565 8ecf043399c73aa72c6eb703448de0a0 368 PANTHER PTHR35863 2 368 2.0E-112 T 23-04-2016 NIDE_RS09565 8ecf043399c73aa72c6eb703448de0a0 368 Gene3D G3DSA:3.30.2110.10 15 186 7.9E-53 T 23-04-2016 NIDE_RS09565 8ecf043399c73aa72c6eb703448de0a0 368 Pfam PF01888 CbiD 13 272 1.7E-87 T 23-04-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS09565 8ecf043399c73aa72c6eb703448de0a0 368 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 20 360 1.3E-70 T 23-04-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS16435 41a3db0fa7346c856d5b45b33effc96a 146 Pfam PF04519 Polymer-forming cytoskeletal 14 109 1.8E-24 T 23-04-2016 IPR007607 Protein of unknown function DUF583 NIDE_RS16435 41a3db0fa7346c856d5b45b33effc96a 146 PANTHER PTHR35024 14 143 2.5E-29 T 23-04-2016 NIDE_RS10885 2b79a2a6f1049ef1011902f2dfc7b8dc 119 Pfam PF01627 Hpt domain 26 107 1.1E-11 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10885 2b79a2a6f1049ef1011902f2dfc7b8dc 119 SUPERFAMILY SSF47226 5 110 1.5E-20 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10885 2b79a2a6f1049ef1011902f2dfc7b8dc 119 Gene3D G3DSA:1.20.120.160 3 110 6.9E-21 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 PANTHER PTHR13691:SF5 1 275 3.1E-137 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 23-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 Gene3D G3DSA:2.30.30.30 119 195 7.0E-34 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 SMART SM01382 124 253 2.4E-91 T 23-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 PIRSF PIRSF002158 9 275 1.8E-96 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 274 48.023 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 Gene3D G3DSA:4.10.950.10 196 274 2.4E-34 T 23-04-2016 IPR014726 Ribosomal protein L2, domain 3 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 SUPERFAMILY SSF50249 2 124 1.23E-45 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 251 1.5E-56 T 23-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 2.7E-29 T 23-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 SUPERFAMILY SSF50104 126 273 1.14E-60 T 23-04-2016 IPR008991 Translation protein SH3-like domain NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 SMART SM01383 42 118 8.8E-41 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 Gene3D G3DSA:2.40.50.140 1 113 2.3E-47 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 275 1.3E-130 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 NIDE_RS06085 522f8ec74763f32f8711a2fe58d9b459 275 PANTHER PTHR13691 1 275 3.1E-137 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 PANTHER PTHR32282 440 768 6.9E-251 T 23-04-2016 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 PANTHER PTHR32282 1 327 6.9E-251 T 23-04-2016 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 SUPERFAMILY SSF56601 229 251 2.32E-135 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 SUPERFAMILY SSF56601 441 773 2.32E-135 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 SUPERFAMILY SSF56601 278 330 2.32E-135 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 SUPERFAMILY SSF50249 355 438 1.56E-8 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 SUPERFAMILY SSF53955 59 280 1.86E-75 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 SMART SM00316 357 441 1.8E-8 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 Gene3D G3DSA:3.40.710.10 250 330 6.9E-136 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 Gene3D G3DSA:3.40.710.10 439 770 6.9E-136 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 Gene3D G3DSA:1.10.3810.10 73 249 1.9E-72 T 23-04-2016 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 Pfam PF17092 Penicillin-binding protein OB-like domain 333 444 5.6E-13 T 23-04-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 PANTHER PTHR32282:SF5 440 768 6.9E-251 T 23-04-2016 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 PANTHER PTHR32282:SF5 1 327 6.9E-251 T 23-04-2016 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 Pfam PF00912 Transglycosylase 74 247 8.4E-65 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 Pfam PF00905 Penicillin binding protein transpeptidase domain 446 685 1.1E-31 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 82 723 4.9E-192 T 23-04-2016 NIDE_RS18370 69cc510b55fe9afada991528fbe10e6e 797 Gene3D G3DSA:2.40.50.140 355 438 3.3E-10 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS08570 90fd243ec9b62d17b1b5e14836181f02 247 PANTHER PTHR11953:SF0 9 243 1.7E-81 T 23-04-2016 NIDE_RS08570 90fd243ec9b62d17b1b5e14836181f02 247 Gene3D G3DSA:3.30.230.70 9 244 1.2E-30 T 23-04-2016 IPR027408 PNPase/RNase PH domain NIDE_RS08570 90fd243ec9b62d17b1b5e14836181f02 247 ProSitePatterns PS01277 Ribonuclease PH signature. 123 135 - T 23-04-2016 IPR018336 Ribonuclease PH, conserved site NIDE_RS08570 90fd243ec9b62d17b1b5e14836181f02 247 Pfam PF01138 3' exoribonuclease family, domain 1 17 147 6.9E-24 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 NIDE_RS08570 90fd243ec9b62d17b1b5e14836181f02 247 SUPERFAMILY SSF54211 9 188 1.87E-45 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS08570 90fd243ec9b62d17b1b5e14836181f02 247 Hamap MF_00564 Ribonuclease PH [rph]. 8 244 46.81 T 23-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 NIDE_RS08570 90fd243ec9b62d17b1b5e14836181f02 247 PANTHER PTHR11953 9 243 1.7E-81 T 23-04-2016 NIDE_RS08570 90fd243ec9b62d17b1b5e14836181f02 247 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 9 243 8.3E-112 T 23-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 NIDE_RS08570 90fd243ec9b62d17b1b5e14836181f02 247 SUPERFAMILY SSF55666 161 243 6.02E-21 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 NIDE_RS08570 90fd243ec9b62d17b1b5e14836181f02 247 Pfam PF03725 3' exoribonuclease family, domain 2 166 228 9.6E-11 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 NIDE_RS04500 d8d951f349788b5af85089d2cb8301ad 218 Gene3D G3DSA:3.40.190.10 114 176 1.1E-29 T 23-04-2016 NIDE_RS04500 d8d951f349788b5af85089d2cb8301ad 218 Pfam PF01634 ATP phosphoribosyltransferase 50 203 3.1E-52 T 23-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 NIDE_RS04500 d8d951f349788b5af85089d2cb8301ad 218 PANTHER PTHR21403:SF3 1 210 2.8E-93 T 23-04-2016 NIDE_RS04500 d8d951f349788b5af85089d2cb8301ad 218 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 142 163 - T 23-04-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 NIDE_RS04500 d8d951f349788b5af85089d2cb8301ad 218 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 1 183 4.5E-62 T 23-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 NIDE_RS04500 d8d951f349788b5af85089d2cb8301ad 218 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 1 207 52.864 T 23-04-2016 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 NIDE_RS04500 d8d951f349788b5af85089d2cb8301ad 218 SUPERFAMILY SSF53850 1 206 1.61E-66 T 23-04-2016 NIDE_RS04500 d8d951f349788b5af85089d2cb8301ad 218 Gene3D G3DSA:3.40.190.10 1 113 2.3E-35 T 23-04-2016 NIDE_RS04500 d8d951f349788b5af85089d2cb8301ad 218 PANTHER PTHR21403 1 210 2.8E-93 T 23-04-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 NIDE_RS11715 67b5c9391305b0c0a79791e4228e5908 309 PANTHER PTHR10584:SF159 1 302 2.0E-107 T 23-04-2016 NIDE_RS11715 67b5c9391305b0c0a79791e4228e5908 309 Pfam PF00294 pfkB family carbohydrate kinase 1 296 6.3E-40 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB NIDE_RS11715 67b5c9391305b0c0a79791e4228e5908 309 PANTHER PTHR10584 1 302 2.0E-107 T 23-04-2016 NIDE_RS11715 67b5c9391305b0c0a79791e4228e5908 309 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 1 306 1.0E-112 T 23-04-2016 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 NIDE_RS11715 67b5c9391305b0c0a79791e4228e5908 309 Gene3D G3DSA:3.40.1190.20 1 308 6.8E-60 T 23-04-2016 IPR029056 Ribokinase-like NIDE_RS11715 67b5c9391305b0c0a79791e4228e5908 309 SUPERFAMILY SSF53613 1 304 2.65E-55 T 23-04-2016 IPR029056 Ribokinase-like NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 Gene3D G3DSA:1.25.40.10 501 597 2.0E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 Gene3D G3DSA:1.25.40.10 231 357 2.0E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 Gene3D G3DSA:1.25.40.10 7 205 9.0E-26 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 SUPERFAMILY SSF48452 497 599 2.25E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 Pfam PF13174 Tetratricopeptide repeat 539 563 0.046 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 SUPERFAMILY SSF48452 12 207 2.09E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 SUPERFAMILY SSF48452 238 359 2.11E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 SMART SM00028 113 146 0.0034 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 SMART SM00028 535 567 180.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 SMART SM00028 501 534 190.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 SMART SM00028 324 357 72.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 SMART SM00028 59 92 19.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 SMART SM00028 167 200 3.3 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 Pfam PF13432 Tetratricopeptide repeat 117 171 3.5E-4 T 23-04-2016 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 Pfam PF13432 Tetratricopeptide repeat 296 350 0.013 T 23-04-2016 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 Pfam PF13432 Tetratricopeptide repeat 10 68 7.5E-4 T 23-04-2016 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 Pfam PF13181 Tetratricopeptide repeat 501 524 0.016 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 PANTHER PTHR23083 249 282 1.6E-29 T 23-04-2016 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 PANTHER PTHR23083 501 597 1.6E-29 T 23-04-2016 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 PANTHER PTHR23083 303 353 1.6E-29 T 23-04-2016 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 PANTHER PTHR23083 53 159 1.6E-29 T 23-04-2016 NIDE_RS12105 4016f8d4df0ddbb6a3a1b4d04a2991b5 639 Pfam PF14559 Tetratricopeptide repeat 247 289 1.6E-6 T 23-04-2016 NIDE_RS09855 3e0573d4b387ba40c1a35dab990c9ee0 447 Gene3D G3DSA:3.90.1150.10 314 440 2.4E-46 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS09855 3e0573d4b387ba40c1a35dab990c9ee0 447 PANTHER PTHR11986 5 446 2.7E-176 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS09855 3e0573d4b387ba40c1a35dab990c9ee0 447 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 248 285 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS09855 3e0573d4b387ba40c1a35dab990c9ee0 447 SUPERFAMILY SSF53383 15 438 3.56E-117 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS09855 3e0573d4b387ba40c1a35dab990c9ee0 447 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 7 441 4.3E-159 T 23-04-2016 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|UniPathway: UPA00067 NIDE_RS09855 3e0573d4b387ba40c1a35dab990c9ee0 447 Gene3D G3DSA:3.40.640.10 61 313 7.8E-71 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS09855 3e0573d4b387ba40c1a35dab990c9ee0 447 Pfam PF00202 Aminotransferase class-III 25 438 1.3E-91 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS09855 3e0573d4b387ba40c1a35dab990c9ee0 447 PANTHER PTHR11986:SF7 5 446 2.7E-176 T 23-04-2016 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 565 41.487 T 23-04-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 Gene3D G3DSA:3.30.930.10 385 466 9.6E-102 T 23-04-2016 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 Gene3D G3DSA:3.30.930.10 11 234 9.6E-102 T 23-04-2016 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 560 7.6E-224 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 455 5.6E-48 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 SUPERFAMILY SSF55681 9 237 8.81E-102 T 23-04-2016 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 SUPERFAMILY SSF55681 403 473 8.81E-102 T 23-04-2016 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 PANTHER PTHR11451 4 244 5.3E-155 T 23-04-2016 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 PANTHER PTHR11451 395 565 5.3E-155 T 23-04-2016 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 SUPERFAMILY SSF55826 219 385 1.12E-32 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 PIRSF PIRSF001535 1 568 2.9E-271 T 23-04-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.0E-18 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.0E-18 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.0E-18 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.0E-18 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 PANTHER PTHR11451:SF3 4 244 5.3E-155 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 PANTHER PTHR11451:SF3 395 565 5.3E-155 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 Pfam PF04073 Aminoacyl-tRNA editing domain 257 374 1.4E-27 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 Gene3D G3DSA:3.40.50.800 467 565 1.5E-27 T 23-04-2016 IPR004154 Anticodon-binding NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 Gene3D G3DSA:3.90.960.10 256 384 1.3E-34 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 SUPERFAMILY SSF52954 459 565 4.08E-30 T 23-04-2016 IPR004154 Anticodon-binding NIDE_RS06970 938838dc6377046f93a5ee39d1d81195 568 Pfam PF03129 Anticodon binding domain 471 560 6.6E-19 T 23-04-2016 IPR004154 Anticodon-binding NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SUPERFAMILY SSF55874 922 1050 1.44E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 PANTHER PTHR24423 422 645 9.7E-58 T 23-04-2016 NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 PANTHER PTHR24423 780 1051 9.7E-58 T 23-04-2016 NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Gene3D G3DSA:3.30.565.10 943 1051 1.6E-11 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Gene3D G3DSA:3.30.450.20 582 688 1.5E-23 T 23-04-2016 NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SUPERFAMILY SSF55785 304 435 6.44E-17 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Pfam PF08448 PAS fold 322 437 8.1E-9 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SMART SM00086 780 821 0.0011 T 23-04-2016 IPR001610 PAC motif NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SMART SM00086 521 562 2.0E-4 T 23-04-2016 IPR001610 PAC motif NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SMART SM00086 650 690 0.018 T 23-04-2016 IPR001610 PAC motif NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SMART SM00086 394 437 38.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Gene3D G3DSA:3.30.450.20 446 581 3.0E-30 T 23-04-2016 NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SMART SM00387 959 1051 5.8E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SMART SM00091 449 515 5.3E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SMART SM00091 702 768 6.2E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SMART SM00091 316 386 0.097 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SMART SM00091 574 640 5.8E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Gene3D G3DSA:3.30.450.20 689 818 6.9E-26 T 23-04-2016 NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Gene3D G3DSA:3.30.450.20 305 435 1.2E-18 T 23-04-2016 NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 963 1050 2.4E-10 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 571 697 2.1E-28 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 708 828 1.1E-17 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 446 569 2.1E-17 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 318 444 4.0E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SUPERFAMILY SSF55785 559 688 2.37E-27 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SUPERFAMILY SSF55785 434 560 4.61E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 SUPERFAMILY SSF55785 687 819 3.49E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Pfam PF07730 Histidine kinase 849 921 3.6E-13 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Pfam PF13426 PAS domain 585 689 2.3E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Pfam PF00989 PAS fold 704 817 4.5E-18 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS20830 d91b386a1f9aad2999857632145584c8 1051 Pfam PF00989 PAS fold 450 559 6.4E-14 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 SUPERFAMILY SSF141571 77 212 2.09E-32 T 23-04-2016 NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 PANTHER PTHR14136 324 415 1.1E-46 T 23-04-2016 NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 PANTHER PTHR14136 84 278 1.1E-46 T 23-04-2016 NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 PANTHER PTHR14136:SF0 324 415 1.1E-46 T 23-04-2016 NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 PANTHER PTHR14136:SF0 84 278 1.1E-46 T 23-04-2016 NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 SUPERFAMILY SSF141571 320 451 1.83E-29 T 23-04-2016 NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 Pfam PF00805 Pentapeptide repeats (8 copies) 328 356 2.8E-7 T 23-04-2016 IPR001646 Pentapeptide repeat NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 Pfam PF00805 Pentapeptide repeats (8 copies) 108 145 1.1E-8 T 23-04-2016 IPR001646 Pentapeptide repeat NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 Pfam PF00805 Pentapeptide repeats (8 copies) 200 237 1.4E-11 T 23-04-2016 IPR001646 Pentapeptide repeat NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 Pfam PF00805 Pentapeptide repeats (8 copies) 362 393 3.9E-6 T 23-04-2016 IPR001646 Pentapeptide repeat NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 Pfam PF00805 Pentapeptide repeats (8 copies) 243 281 1.0E-9 T 23-04-2016 IPR001646 Pentapeptide repeat NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 Pfam PF00805 Pentapeptide repeats (8 copies) 399 437 2.2E-10 T 23-04-2016 IPR001646 Pentapeptide repeat NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 Pfam PF00805 Pentapeptide repeats (8 copies) 288 326 2.0E-7 T 23-04-2016 IPR001646 Pentapeptide repeat NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 Pfam PF00805 Pentapeptide repeats (8 copies) 160 195 4.6E-9 T 23-04-2016 IPR001646 Pentapeptide repeat NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 Gene3D G3DSA:3.80.10.10 134 437 3.5E-5 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like NIDE_RS21025 c2db01f2ef8fbf9de2473dead849ee5d 476 SUPERFAMILY SSF141571 166 333 9.81E-40 T 23-04-2016 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 PANTHER PTHR34186:SF2 16 146 2.7E-43 T 23-04-2016 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 SUPERFAMILY SSF47413 3 76 6.98E-14 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 SUPERFAMILY SSF55234 80 146 3.14E-25 T 23-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 PIRSF PIRSF001263 1 146 7.8E-45 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 Gene3D G3DSA:3.30.1160.10 80 146 7.2E-29 T 23-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 Gene3D G3DSA:1.10.260.40 1 78 1.4E-20 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 Hamap MF_00535 Cyanate hydratase [cynS]. 1 146 49.657 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 PANTHER PTHR34186 16 146 2.7E-43 T 23-04-2016 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 SMART SM00530 9 64 4.6E-4 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 PRINTS PR01693 Cyanase signature 99 115 1.3E-23 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 PRINTS PR01693 Cyanase signature 131 141 1.3E-23 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 PRINTS PR01693 Cyanase signature 81 95 1.3E-23 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 PRINTS PR01693 Cyanase signature 34 51 1.3E-23 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 PRINTS PR01693 Cyanase signature 14 29 1.3E-23 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 SMART SM01116 74 146 5.4E-31 T 23-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 Pfam PF02560 Cyanate lyase C-terminal domain 79 144 4.7E-32 T 23-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS06325 47502ef18d781d847b92f1482c6a8d64 146 TIGRFAM TIGR00673 cynS: cyanase 6 146 1.6E-41 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 NIDE_RS10760 a58cc026cd7e878d37ed552f3e0034d1 66 SUPERFAMILY SSF46955 13 62 7.69E-7 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS10760 a58cc026cd7e878d37ed552f3e0034d1 66 Gene3D G3DSA:1.10.10.10 17 63 3.4E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS10760 a58cc026cd7e878d37ed552f3e0034d1 66 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 14 60 4.6E-14 T 23-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 NIDE_RS10760 a58cc026cd7e878d37ed552f3e0034d1 66 Pfam PF12728 Helix-turn-helix domain 14 62 3.5E-16 T 23-04-2016 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 273 6.5E-67 T 23-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 SUPERFAMILY SSF57716 222 274 1.08E-10 T 23-04-2016 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 SUPERFAMILY SSF46946 136 222 2.75E-23 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 SMART SM01232 136 226 6.7E-31 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 Pfam PF06827 Zinc finger found in FPG and IleRS 246 274 6.2E-5 T 23-04-2016 IPR010663 Zinc finger, FPG/IleRS-type NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 ProSitePatterns PS01242 Zinc finger FPG-type signature. 249 273 - T 23-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 Gene3D G3DSA:1.10.8.50 137 274 6.4E-40 T 23-04-2016 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 PANTHER PTHR22993 1 275 2.7E-70 T 23-04-2016 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 146 223 2.8E-22 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 119 2.2E-21 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 PANTHER PTHR22993:SF15 1 275 2.7E-70 T 23-04-2016 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 SUPERFAMILY SSF81624 2 142 5.89E-23 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 SMART SM00898 2 121 1.2E-18 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 NIDE_RS03830 f0dab191c6139f7ef1fdd2653bcc55c8 287 Gene3D G3DSA:3.20.190.10 2 130 2.8E-21 T 23-04-2016 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 Gene3D G3DSA:3.90.800.10 105 213 5.3E-44 T 23-04-2016 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 Gene3D G3DSA:2.40.240.10 468 555 3.9E-29 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 37 48 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 31 341 2.4E-103 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 PANTHER PTHR11451 12 251 1.6E-218 T 23-04-2016 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 PANTHER PTHR11451 271 567 1.6E-218 T 23-04-2016 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 SUPERFAMILY SSF50715 344 555 4.24E-69 T 23-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 557 51.287 T 23-04-2016 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 PRINTS PR00987 Glutamyl-tRNA synthetase signature 34 46 1.5E-7 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 PRINTS PR00987 Glutamyl-tRNA synthetase signature 214 224 1.5E-7 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 PRINTS PR00987 Glutamyl-tRNA synthetase signature 64 77 1.5E-7 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 Gene3D G3DSA:2.40.240.10 352 467 1.1E-50 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 Gene3D G3DSA:3.40.50.620 216 266 4.1E-42 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 Gene3D G3DSA:3.40.50.620 31 100 4.1E-42 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 PANTHER PTHR11451:SF29 12 251 1.6E-218 T 23-04-2016 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 PANTHER PTHR11451:SF29 271 567 1.6E-218 T 23-04-2016 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 31 559 1.5E-216 T 23-04-2016 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 Gene3D G3DSA:1.10.1160.10 267 342 3.6E-35 T 23-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 SUPERFAMILY SSF52374 23 341 7.68E-96 T 23-04-2016 NIDE_RS18295 792d58160b5d559b19400cbc4ad6c33a 567 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 344 537 2.8E-58 T 23-04-2016 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: REACT_71 NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 Pfam PF12848 ABC transporter 208 273 3.6E-5 T 23-04-2016 IPR032781 ABC-transporter extension domain NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 Gene3D G3DSA:3.40.50.300 5 236 2.3E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 Gene3D G3DSA:3.40.50.300 293 499 2.9E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 SUPERFAMILY SSF52540 5 217 6.16E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 PANTHER PTHR19211 6 547 2.0E-154 T 23-04-2016 NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 SMART SM00382 31 200 2.9E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 SMART SM00382 319 488 1.4E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 PANTHER PTHR19211:SF45 6 547 2.0E-154 T 23-04-2016 NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 ProSitePatterns PS00211 ABC transporters family signature. 416 430 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 Pfam PF00005 ABC transporter 311 444 5.9E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 Pfam PF00005 ABC transporter 23 155 2.0E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 SUPERFAMILY SSF52540 289 487 5.71E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18305 a6c8ef3466e02ddde76b036c0dede8b7 614 Pfam PF16326 ABC transporter C-terminal domain 537 605 5.7E-15 T 23-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 SUPERFAMILY SSF56235 2 233 4.98E-70 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 40.92 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 SUPERFAMILY SSF53697 245 610 3.34E-122 T 23-04-2016 NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 Pfam PF13522 Glutamine amidotransferase domain 62 192 3.7E-22 T 23-04-2016 NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 1.6E-254 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 PANTHER PTHR10937 1 610 0.0 T 23-04-2016 NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 Gene3D G3DSA:3.40.50.10490 244 444 1.0E-75 T 23-04-2016 NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 Gene3D G3DSA:3.60.20.10 2 240 2.4E-79 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 PANTHER PTHR10937:SF0 1 610 0.0 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 Pfam PF01380 SIS domain 464 592 1.8E-26 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 Pfam PF01380 SIS domain 291 418 3.2E-33 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 NIDE_RS13370 1e69a7a491d592f878aba4a3d018ba36 610 Gene3D G3DSA:3.40.50.10490 445 610 5.4E-66 T 23-04-2016 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 SMART SM00388 370 436 0.001 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 SMART SM00065 12 152 0.013 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 SMART SM00065 183 333 0.013 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 585 4.0E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 Gene3D G3DSA:3.30.450.40 180 319 3.1E-13 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 585 1.5E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 519 533 1.5E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 566 1.5E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 547 1.5E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 SUPERFAMILY SSF55781 181 321 1.48E-11 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 Pfam PF01590 GAF domain 191 319 3.0E-5 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 Pfam PF01590 GAF domain 14 142 1.8E-5 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 SUPERFAMILY SSF47384 363 432 2.35E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 PANTHER PTHR24423:SF445 365 585 1.5E-54 T 23-04-2016 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 Gene3D G3DSA:1.10.287.130 364 432 1.7E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 Gene3D G3DSA:3.30.565.10 441 585 2.8E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 SUPERFAMILY SSF55781 15 148 2.18E-11 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 Gene3D G3DSA:3.30.450.40 14 143 1.5E-10 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 SMART SM00387 478 588 5.5E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 PANTHER PTHR24423 365 585 1.5E-54 T 23-04-2016 NIDE_RS03195 9d5f4c2a6d8a233b59fefda32b02c6f2 610 SUPERFAMILY SSF55874 425 586 1.77E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS21015 c98964892f1633f46e027e7396d4bee0 395 Pfam PF13847 Methyltransferase domain 62 190 1.6E-27 T 23-04-2016 IPR025714 Methyltransferase domain NIDE_RS21015 c98964892f1633f46e027e7396d4bee0 395 Gene3D G3DSA:3.40.50.150 59 223 3.0E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS21015 c98964892f1633f46e027e7396d4bee0 395 PANTHER PTHR10108 62 262 5.3E-48 T 23-04-2016 NIDE_RS21015 c98964892f1633f46e027e7396d4bee0 395 PANTHER PTHR10108:SF924 62 262 5.3E-48 T 23-04-2016 NIDE_RS21015 c98964892f1633f46e027e7396d4bee0 395 SUPERFAMILY SSF53335 28 215 8.53E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12915 0f81008f8d29238b759ed56d2b6f6eb0 439 Gene3D G3DSA:3.20.20.80 112 318 4.2E-19 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 NIDE_RS12915 0f81008f8d29238b759ed56d2b6f6eb0 439 SUPERFAMILY SSF51445 105 318 1.72E-24 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 Gene3D G3DSA:3.30.70.1400 50 130 9.2E-27 T 23-04-2016 NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 SUPERFAMILY SSF101790 272 364 6.54E-24 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 PANTHER PTHR13847:SF5 4 361 9.2E-70 T 23-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 Gene3D G3DSA:2.40.30.110 281 364 9.9E-25 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 Pfam PF01571 Aminomethyltransferase folate-binding domain 6 258 2.0E-92 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 364 42.377 T 23-04-2016 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 PIRSF PIRSF006487 1 368 1.3E-100 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 Gene3D G3DSA:3.30.1360.120 133 235 1.4E-29 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 SUPERFAMILY SSF103025 1 280 1.68E-96 T 23-04-2016 NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 363 7.6E-112 T 23-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 PANTHER PTHR13847 4 361 9.2E-70 T 23-04-2016 NIDE_RS01470 f7a7beaca984dc87d2a93dc95515be30 369 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 264 359 2.0E-23 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NIDE_RS02285 9a4cb7f74e5c2cfe2fd04f5e38fd7ec2 471 Pfam PF02646 RmuC family 154 444 3.2E-92 T 23-04-2016 IPR003798 DNA recombination RmuC NIDE_RS02285 9a4cb7f74e5c2cfe2fd04f5e38fd7ec2 471 PANTHER PTHR30563 26 459 5.3E-57 T 23-04-2016 NIDE_RS17260 a63ca3acd5eab1754bed06652794cf57 400 Gene3D G3DSA:1.20.1250.20 16 200 6.4E-27 T 23-04-2016 NIDE_RS17260 a63ca3acd5eab1754bed06652794cf57 400 Gene3D G3DSA:1.20.1250.20 238 390 1.4E-23 T 23-04-2016 NIDE_RS17260 a63ca3acd5eab1754bed06652794cf57 400 ProSitePatterns PS00216 Sugar transport proteins signature 1. 70 87 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 NIDE_RS17260 a63ca3acd5eab1754bed06652794cf57 400 PANTHER PTHR23518:SF2 10 386 4.9E-109 T 23-04-2016 NIDE_RS17260 a63ca3acd5eab1754bed06652794cf57 400 PANTHER PTHR23518 10 386 4.9E-109 T 23-04-2016 NIDE_RS17260 a63ca3acd5eab1754bed06652794cf57 400 Pfam PF07690 Major Facilitator Superfamily 21 206 1.7E-21 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS17260 a63ca3acd5eab1754bed06652794cf57 400 Pfam PF07690 Major Facilitator Superfamily 248 386 1.8E-14 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS17260 a63ca3acd5eab1754bed06652794cf57 400 SUPERFAMILY SSF103473 14 392 1.57E-57 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS21125 1d4c4ff8d33ab52bd45d3359b28b4071 583 Gene3D G3DSA:3.30.70.270 176 333 3.7E-37 T 23-04-2016 NIDE_RS21125 1d4c4ff8d33ab52bd45d3359b28b4071 583 SMART SM00267 161 332 1.0E-31 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS21125 1d4c4ff8d33ab52bd45d3359b28b4071 583 PANTHER PTHR10799 201 331 6.1E-18 T 23-04-2016 NIDE_RS21125 1d4c4ff8d33ab52bd45d3359b28b4071 583 PANTHER PTHR10799 441 542 6.1E-18 T 23-04-2016 NIDE_RS21125 1d4c4ff8d33ab52bd45d3359b28b4071 583 PANTHER PTHR10799:SF750 201 331 6.1E-18 T 23-04-2016 NIDE_RS21125 1d4c4ff8d33ab52bd45d3359b28b4071 583 Pfam PF00990 Diguanylate cyclase, GGDEF domain 175 325 1.4E-31 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS21125 1d4c4ff8d33ab52bd45d3359b28b4071 583 PANTHER PTHR10799:SF750 441 542 6.1E-18 T 23-04-2016 NIDE_RS21125 1d4c4ff8d33ab52bd45d3359b28b4071 583 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 176 330 3.9E-31 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS21125 1d4c4ff8d33ab52bd45d3359b28b4071 583 SUPERFAMILY SSF55073 179 327 3.69E-31 T 23-04-2016 IPR029787 Nucleotide cyclase NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 252 362 3.1E-24 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 SUPERFAMILY SSF55957 361 459 2.79E-19 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 Gene3D G3DSA:3.30.310.50 365 460 8.0E-24 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 SUPERFAMILY SSF53738 146 249 5.1E-30 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 Gene3D G3DSA:3.40.120.10 3 123 1.4E-32 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 227 242 1.912472E-19 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 1.912472E-19 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 198 211 1.912472E-19 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 164 183 1.912472E-19 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 Gene3D G3DSA:3.40.120.10 167 243 3.6E-31 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 Gene3D G3DSA:3.40.120.10 244 361 1.6E-42 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 SUPERFAMILY SSF53738 3 124 1.45E-35 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 131 1.8E-32 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 SUPERFAMILY SSF53738 251 359 1.18E-30 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 PANTHER PTHR22573 3 466 1.9E-170 T 23-04-2016 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 392 453 4.6E-10 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 PANTHER PTHR22573:SF28 3 466 1.9E-170 T 23-04-2016 NIDE_RS13650 19842b68fd17601be380f678d32c4d60 466 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 148 247 5.2E-27 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS04850 49a5f32f8128dc87b20d76bf23bb9717 130 Gene3D G3DSA:3.10.450.50 3 129 8.6E-45 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS04850 49a5f32f8128dc87b20d76bf23bb9717 130 SUPERFAMILY SSF54427 5 128 2.93E-37 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS04850 49a5f32f8128dc87b20d76bf23bb9717 130 PANTHER PTHR34957 3 128 1.9E-35 T 23-04-2016 NIDE_RS04850 49a5f32f8128dc87b20d76bf23bb9717 130 Pfam PF13474 SnoaL-like domain 9 129 9.4E-30 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 Gene3D G3DSA:3.40.50.300 286 488 5.2E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 PANTHER PTHR30195:SF13 10 436 0.0 T 23-04-2016 NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 PANTHER PTHR30195:SF13 463 934 0.0 T 23-04-2016 NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 SMART SM00487 289 512 2.8E-7 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 138 227 1.1E-18 T 23-04-2016 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 PANTHER PTHR30195 10 436 0.0 T 23-04-2016 NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 PANTHER PTHR30195 463 934 0.0 T 23-04-2016 NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 Pfam PF04851 Type III restriction enzyme, res subunit 294 485 1.2E-14 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 SUPERFAMILY SSF52540 315 373 5.65E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 SUPERFAMILY SSF52540 636 734 5.65E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 SUPERFAMILY SSF52540 261 445 3.6E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08710 ac0f5222f788aa0e43db200c96d76499 1007 SUPERFAMILY SSF52540 473 490 3.6E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03530 e845a85fa1391c5d8bd98fad2dac4d2a 235 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 13 233 3.4E-57 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 NIDE_RS03530 e845a85fa1391c5d8bd98fad2dac4d2a 235 SUPERFAMILY SSF51419 6 231 4.97E-72 T 23-04-2016 IPR029066 PLP-binding barrel NIDE_RS03530 e845a85fa1391c5d8bd98fad2dac4d2a 235 Pfam PF01168 Alanine racemase, N-terminal domain 20 233 5.5E-24 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS03530 e845a85fa1391c5d8bd98fad2dac4d2a 235 PIRSF PIRSF004848 2 235 1.5E-72 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 NIDE_RS03530 e845a85fa1391c5d8bd98fad2dac4d2a 235 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 80 94 - T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 NIDE_RS03530 e845a85fa1391c5d8bd98fad2dac4d2a 235 Gene3D G3DSA:3.20.20.10 6 233 1.6E-84 T 23-04-2016 IPR029066 PLP-binding barrel NIDE_RS03530 e845a85fa1391c5d8bd98fad2dac4d2a 235 PANTHER PTHR10146 3 233 1.4E-89 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 PANTHER PTHR33516 7 183 6.7E-42 T 23-04-2016 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 Gene3D G3DSA:1.10.260.40 8 56 2.5E-11 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 SMART SM00530 6 64 1.8E-6 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 104 115 6.0E-7 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 132 144 6.0E-7 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 93 103 6.0E-7 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 TIGRFAM TIGR00498 lexA: repressor LexA 8 180 4.4E-36 T 23-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 Gene3D G3DSA:2.10.109.10 58 180 1.5E-37 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 SUPERFAMILY SSF51306 58 178 4.36E-28 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 PANTHER PTHR33516:SF2 7 183 6.7E-42 T 23-04-2016 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 SUPERFAMILY SSF47413 3 55 2.3E-9 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 Pfam PF01381 Helix-turn-helix 8 45 4.1E-10 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS14400 37a20c4223c59d6dd217b136293d3443 183 Pfam PF00717 Peptidase S24-like 96 162 4.5E-13 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B NIDE_RS04510 a69ae8ae27e636c6436dca651e908548 201 PANTHER PTHR23133 6 201 4.6E-95 T 23-04-2016 NIDE_RS04510 a69ae8ae27e636c6436dca651e908548 201 SUPERFAMILY SSF54211 8 91 1.23E-31 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS04510 a69ae8ae27e636c6436dca651e908548 201 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 67 80 - T 23-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 NIDE_RS04510 a69ae8ae27e636c6436dca651e908548 201 SUPERFAMILY SSF54211 93 185 2.28E-34 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS04510 a69ae8ae27e636c6436dca651e908548 201 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 37 180 2.6E-63 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 NIDE_RS04510 a69ae8ae27e636c6436dca651e908548 201 Gene3D G3DSA:3.30.230.40 8 95 4.4E-37 T 23-04-2016 NIDE_RS04510 a69ae8ae27e636c6436dca651e908548 201 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 8 201 40.9 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 NIDE_RS04510 a69ae8ae27e636c6436dca651e908548 201 Gene3D G3DSA:3.30.230.40 96 201 2.1E-32 T 23-04-2016 NIDE_RS04510 a69ae8ae27e636c6436dca651e908548 201 PANTHER PTHR23133:SF2 6 201 4.6E-95 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 NIDE_RS04510 a69ae8ae27e636c6436dca651e908548 201 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 162 174 - T 23-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 NIDE_RS10580 50992f2fda72e594b8edcaaaab475243 263 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 143 244 1.5E-30 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G NIDE_RS10580 50992f2fda72e594b8edcaaaab475243 263 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 5.0E-46 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G NIDE_RS10580 50992f2fda72e594b8edcaaaab475243 263 SUPERFAMILY SSF117143 92 223 3.53E-31 T 23-04-2016 NIDE_RS10580 50992f2fda72e594b8edcaaaab475243 263 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 261 1.7E-106 T 23-04-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 NIDE_RS10580 50992f2fda72e594b8edcaaaab475243 263 PANTHER PTHR30435 1 263 1.1E-114 T 23-04-2016 NIDE_RS10580 50992f2fda72e594b8edcaaaab475243 263 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site NIDE_RS10580 50992f2fda72e594b8edcaaaab475243 263 PANTHER PTHR30435:SF19 1 263 1.1E-114 T 23-04-2016 NIDE_RS10580 50992f2fda72e594b8edcaaaab475243 263 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 183 261 4.5E-24 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain NIDE_RS10580 50992f2fda72e594b8edcaaaab475243 263 Pfam PF00460 Flagella basal body rod protein 5 35 7.1E-10 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 PANTHER PTHR11219:SF46 502 622 1.4E-23 T 23-04-2016 NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 545 621 4.6E-26 T 23-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 SUPERFAMILY SSF49899 4 146 1.92E-23 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 Gene3D G3DSA:2.60.120.200 4 144 3.1E-22 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 PANTHER PTHR11219:SF46 149 362 1.4E-23 T 23-04-2016 NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 PANTHER PTHR11219 502 622 1.4E-23 T 23-04-2016 NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 PANTHER PTHR11219 149 362 1.4E-23 T 23-04-2016 NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 PRINTS PR00394 RHS protein signature 565 585 3.8E-7 T 23-04-2016 IPR001826 RHS protein NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 PRINTS PR00394 RHS protein signature 588 607 3.8E-7 T 23-04-2016 IPR001826 RHS protein NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 200 229 0.0024 T 23-04-2016 IPR006530 YD repeat NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 16 139 1.8E-18 T 23-04-2016 NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 Pfam PF05593 RHS Repeat 271 302 3.0E-7 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07870 fc47c322e4575e3472211983a5b1890a 755 Pfam PF05593 RHS Repeat 200 230 9.8E-5 T 23-04-2016 IPR031325 RHS repeat NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 Gene3D G3DSA:3.30.565.10 590 764 6.7E-52 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 SUPERFAMILY SSF55874 594 765 9.56E-51 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 651 762 7.6E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 SUPERFAMILY SSF55781 330 504 3.71E-27 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 Gene3D G3DSA:3.30.450.40 328 509 3.2E-30 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 SMART SM00448 777 888 1.1E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 Pfam PF01590 GAF domain 351 496 9.4E-15 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 Pfam PF00512 His Kinase A (phospho-acceptor) domain 537 604 1.1E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 SMART SM00388 536 604 6.9E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 SMART SM00065 351 506 3.6E-21 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 SMART SM00387 650 763 2.9E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 SUPERFAMILY SSF47384 522 605 1.39E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 PANTHER PTHR24423 515 893 3.5E-124 T 23-04-2016 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 Pfam PF00072 Response regulator receiver domain 779 888 2.1E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 706 716 9.0E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 747 760 9.0E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 723 741 9.0E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 PRINTS PR00344 Bacterial sensor protein C-terminal signature 688 702 9.0E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 Gene3D G3DSA:1.10.287.130 528 589 2.2E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 Gene3D G3DSA:3.40.50.2300 778 892 2.4E-36 T 23-04-2016 NIDE_RS02580 265a148faaf69c94f857986241a0bd73 905 SUPERFAMILY SSF52172 777 892 8.82E-38 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 SMART SM00388 373 440 6.9E-23 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 Pfam PF00989 PAS fold 262 364 1.7E-9 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 Gene3D G3DSA:1.10.287.130 365 425 2.2E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 Gene3D G3DSA:3.30.450.20 257 364 2.1E-13 T 23-04-2016 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 Pfam PF00512 His Kinase A (phospho-acceptor) domain 374 440 5.1E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 SUPERFAMILY SSF55785 270 372 4.01E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 PRINTS PR00344 Bacterial sensor protein C-terminal signature 549 559 7.5E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 584 7.5E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 PRINTS PR00344 Bacterial sensor protein C-terminal signature 590 603 7.5E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 545 7.5E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 SUPERFAMILY SSF47384 358 441 2.35E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 Gene3D G3DSA:3.30.450.20 35 145 5.1E-9 T 23-04-2016 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 PANTHER PTHR24423 257 607 4.0E-98 T 23-04-2016 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 SUPERFAMILY SSF55874 429 607 3.41E-50 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 SUPERFAMILY SSF158472 200 249 1.14E-9 T 23-04-2016 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 Pfam PF00672 HAMP domain 181 248 1.3E-14 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 SMART SM00091 259 325 4.8E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 SMART SM00387 486 606 1.7E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 605 1.8E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 Gene3D G3DSA:3.30.565.10 426 608 1.2E-48 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 263 371 2.5E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS03940 880041b41983b21b5bfde0cfeb56576a 619 SMART SM00304 200 252 2.3E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 Pfam PF13243 Squalene-hopene cyclase C-terminal domain 381 698 1.5E-143 T 23-04-2016 IPR032696 Squalene cyclase, C-terminal NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 Gene3D G3DSA:1.50.10.20 92 360 3.6E-69 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 Pfam PF13249 Squalene-hopene cyclase N-terminal domain 70 362 6.3E-117 T 23-04-2016 IPR032697 Squalene cyclase, N-terminal NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 PANTHER PTHR11764 62 706 4.2E-282 T 23-04-2016 NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 TIGRFAM TIGR01787 squalene_cyclas: squalene/oxidosqualene cyclases 69 698 1.8E-184 T 23-04-2016 IPR018333 Squalene cyclase GO:0016866 NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 PANTHER PTHR11764:SF12 62 706 4.2E-282 T 23-04-2016 NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 TIGRFAM TIGR01507 hopene_cyclase: squalene-hopene cyclase 62 701 1.5E-232 T 23-04-2016 IPR006400 Squalene hopene cyclase GO:0016866|GO:0019746 KEGG: 00030+4.2.1.12|KEGG: 00909+4.2.1.129+5.4.99.17|MetaCyc: PWY-6098|MetaCyc: PWY-7072|UniPathway: UPA00337 NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 SUPERFAMILY SSF48239 376 698 1.8E-100 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 SUPERFAMILY SSF48239 94 361 2.93E-77 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 ProSitePatterns PS01074 Terpene synthases signature. 554 568 - T 23-04-2016 IPR002365 Terpene synthase, conserved site GO:0016866 NIDE_RS03960 87299e8070f5082fb5b7ad4be8b341ad 724 Gene3D G3DSA:1.50.10.20 374 699 6.5E-108 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 PANTHER PTHR10836:SF50 1 333 2.4E-210 T 23-04-2016 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 323 1.6E-133 T 23-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 SUPERFAMILY SSF55347 152 314 6.85E-71 T 23-04-2016 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 SUPERFAMILY SSF51735 4 168 1.75E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 23-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 Gene3D G3DSA:3.40.50.720 1 160 7.2E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 Gene3D G3DSA:3.30.360.10 161 315 3.7E-74 T 23-04-2016 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 2.4E-40 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 2.4E-40 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 2.4E-40 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 2.4E-40 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 2.4E-40 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 152 2.0E-59 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 PIRSF PIRSF000149 1 335 6.8E-136 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 SMART SM00846 3 152 1.4E-92 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 PANTHER PTHR10836 1 333 2.4E-210 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS05110 05add9b787886ca77f12789734cd0ac5 335 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 313 4.2E-66 T 23-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 NIDE_RS14720 3de7723b099203567342be0193f3d59d 118 Pfam PF16785 Small metal-binding protein 8 116 1.3E-32 T 23-04-2016 IPR031877 Metal-binding protein SmbP GO:0046872 NIDE_RS14720 3de7723b099203567342be0193f3d59d 118 Gene3D G3DSA:1.20.1270.10 51 115 5.8E-4 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain NIDE_RS18095 cfdcad3ad35a1b79cb16fdaa791776c5 263 Pfam PF12729 Four helix bundle sensory module for signal transduction 28 209 3.5E-11 T 23-04-2016 IPR024478 4HB MCP domain NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 Pfam PF00488 MutS domain V 634 823 7.4E-82 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 Gene3D G3DSA:3.40.1170.10 6 119 1.9E-47 T 23-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 SUPERFAMILY SSF52540 589 824 1.16E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 Pfam PF05192 MutS domain III 286 581 1.4E-37 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 SUPERFAMILY SSF48334 283 586 3.4E-82 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 SUPERFAMILY SSF53150 116 294 4.97E-30 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 PANTHER PTHR11361:SF86 7 827 0.0 T 23-04-2016 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 7 877 8.7E-293 T 23-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 SUPERFAMILY SSF55271 5 114 2.62E-39 T 23-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 PANTHER PTHR11361 7 827 0.0 T 23-04-2016 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 712 728 - T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 Pfam PF05188 MutS domain II 127 268 1.6E-19 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 Gene3D G3DSA:1.10.1420.10 280 490 1.2E-50 T 23-04-2016 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 SMART SM00533 305 613 6.1E-97 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 Pfam PF01624 MutS domain I 7 118 7.1E-42 T 23-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 SMART SM00534 631 820 1.2E-112 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 PIRSF PIRSF037677 3 845 3.1E-151 T 23-04-2016 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 Gene3D G3DSA:3.40.50.300 589 823 8.4E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 6 871 24.786 T 23-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 Gene3D G3DSA:3.30.420.110 126 271 4.6E-28 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 NIDE_RS18800 7bf78ecdfe518acbd5afb7640ed0e00a 882 Pfam PF05190 MutS family domain IV 450 539 1.1E-28 T 23-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 NIDE_RS10875 482f49b6a9454281678471cf31860c9f 116 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 103 2.9E-19 T 23-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 NIDE_RS10875 482f49b6a9454281678471cf31860c9f 116 Pfam PF01740 STAS domain 8 106 5.9E-16 T 23-04-2016 IPR002645 STAS domain NIDE_RS10875 482f49b6a9454281678471cf31860c9f 116 Gene3D G3DSA:3.30.750.24 1 108 8.0E-24 T 23-04-2016 IPR002645 STAS domain NIDE_RS10875 482f49b6a9454281678471cf31860c9f 116 PANTHER PTHR33495 1 114 4.0E-20 T 23-04-2016 NIDE_RS10875 482f49b6a9454281678471cf31860c9f 116 SUPERFAMILY SSF52091 1 108 2.35E-22 T 23-04-2016 IPR002645 STAS domain NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PANTHER PTHR11405:SF1 15 320 3.1E-147 T 23-04-2016 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 16 318 7.0E-126 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 16 156 1.2E-47 T 23-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 Gene3D G3DSA:3.40.50.1370 15 152 5.9E-52 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 162 316 1.8E-60 T 23-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PANTHER PTHR11405 15 320 3.1E-147 T 23-04-2016 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 Gene3D G3DSA:3.40.50.1370 153 305 4.8E-66 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 SUPERFAMILY SSF53671 15 320 8.51E-107 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PRINTS PR00102 Ornithine carbamoyltransferase signature 297 308 5.2E-30 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PRINTS PR00102 Ornithine carbamoyltransferase signature 132 146 5.2E-30 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PRINTS PR00102 Ornithine carbamoyltransferase signature 235 245 5.2E-30 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PRINTS PR00102 Ornithine carbamoyltransferase signature 59 73 5.2E-30 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PRINTS PR00102 Ornithine carbamoyltransferase signature 92 105 5.2E-30 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 61 68 - T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 15 319 79.319 T 23-04-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 143 154 2.3E-29 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 283 306 2.3E-29 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 271 280 2.3E-29 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS02220 3cde45e5dff5b773ef16b28abc60478b 326 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 61 80 2.3E-29 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS12655 d8754fc533986b91167db9e6f00e3cd3 403 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 403 145.174 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 NIDE_RS12655 d8754fc533986b91167db9e6f00e3cd3 403 PANTHER PTHR23100 1 403 3.3E-186 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 NIDE_RS12655 d8754fc533986b91167db9e6f00e3cd3 403 PANTHER PTHR23100:SF0 1 403 3.3E-186 T 23-04-2016 NIDE_RS12655 d8754fc533986b91167db9e6f00e3cd3 403 SUPERFAMILY SSF56266 11 399 9.81E-133 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 NIDE_RS12655 d8754fc533986b91167db9e6f00e3cd3 403 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 32 403 5.0E-89 T 23-04-2016 NIDE_RS12655 d8754fc533986b91167db9e6f00e3cd3 403 Gene3D G3DSA:3.60.70.12 5 275 6.2E-102 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 NIDE_RS12655 d8754fc533986b91167db9e6f00e3cd3 403 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 4 403 8.8E-139 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 NIDE_RS12655 d8754fc533986b91167db9e6f00e3cd3 403 Pfam PF01960 ArgJ family 16 403 1.4E-146 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 208 5.8E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 PANTHER PTHR26402 3 208 5.0E-63 T 23-04-2016 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 Gene3D G3DSA:1.10.10.10 158 213 5.2E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 Gene3D G3DSA:3.40.50.2300 2 157 3.3E-35 T 23-04-2016 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 8.2E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 8.2E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 8.2E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 SMART SM00421 153 210 2.0E-22 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 PANTHER PTHR26402:SF151 3 208 5.0E-63 T 23-04-2016 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 Pfam PF00072 Response regulator receiver domain 5 116 5.0E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 SMART SM00448 3 116 3.0E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 SUPERFAMILY SSF46894 151 212 1.09E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS05125 68a0b50e6b790dde0c4d1c436ce9dc77 214 SUPERFAMILY SSF52172 1 129 2.28E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS12455 2041c770205966c4df6d2a18f3986d0d 281 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 50 268 1.6E-18 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS12455 2041c770205966c4df6d2a18f3986d0d 281 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 279 1.0E-32 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS12455 2041c770205966c4df6d2a18f3986d0d 281 PANTHER PTHR30469 43 280 1.2E-32 T 23-04-2016 NIDE_RS12455 2041c770205966c4df6d2a18f3986d0d 281 Gene3D G3DSA:2.40.50.100 50 81 1.9E-12 T 23-04-2016 NIDE_RS12455 2041c770205966c4df6d2a18f3986d0d 281 Gene3D G3DSA:2.40.50.100 169 194 1.9E-12 T 23-04-2016 NIDE_RS12455 2041c770205966c4df6d2a18f3986d0d 281 SUPERFAMILY SSF111369 43 278 1.02E-22 T 23-04-2016 NIDE_RS18565 650a4e834a7b0ecef7da062ad84774cc 99 PANTHER PTHR33162 1 77 1.6E-16 T 23-04-2016 NIDE_RS18565 650a4e834a7b0ecef7da062ad84774cc 99 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 7.0E-19 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NIDE_RS18565 650a4e834a7b0ecef7da062ad84774cc 99 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 5.3E-9 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 NIDE_RS18565 650a4e834a7b0ecef7da062ad84774cc 99 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 5.3E-9 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 NIDE_RS18565 650a4e834a7b0ecef7da062ad84774cc 99 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 5.3E-9 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 NIDE_RS18565 650a4e834a7b0ecef7da062ad84774cc 99 Pfam PF02416 mttA/Hcf106 family 4 49 4.0E-16 T 23-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 NIDE_RS18565 650a4e834a7b0ecef7da062ad84774cc 99 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 60 17.552 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 SMART SM00841 129 184 3.2E-27 T 23-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 Pfam PF01132 Elongation factor P (EF-P) OB domain 69 121 5.2E-19 T 23-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 23-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 Gene3D G3DSA:2.30.30.30 2 62 8.4E-29 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 SUPERFAMILY SSF50104 2 62 9.53E-19 T 23-04-2016 IPR008991 Translation protein SH3-like domain NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 SMART SM01185 67 121 6.7E-15 T 23-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 PANTHER PTHR30053 2 186 3.9E-80 T 23-04-2016 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 Pfam PF09285 Elongation factor P, C-terminal 129 184 4.7E-23 T 23-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 Gene3D G3DSA:2.40.50.140 65 127 6.5E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 3.0E-23 T 23-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 Gene3D G3DSA:2.40.50.140 128 185 9.8E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 PIRSF PIRSF005901 1 186 6.1E-62 T 23-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 SUPERFAMILY SSF50249 65 129 3.56E-15 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 TIGRFAM TIGR00038 efp: translation elongation factor P 2 185 7.3E-69 T 23-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 Hamap MF_00141 Elongation factor P [efp]. 1 185 43.173 T 23-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 NIDE_RS11310 898761b3072c7a67147b1c603b8efe78 186 SUPERFAMILY SSF50249 128 185 2.06E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS04535 4826be438efe8eaed88d2655a0ebbf05 220 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 1 206 34.085 T 23-04-2016 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19|UniPathway: UPA00031|UniPathway: UPA00031 NIDE_RS04535 4826be438efe8eaed88d2655a0ebbf05 220 Gene3D G3DSA:1.10.287.1080 147 200 2.7E-5 T 23-04-2016 NIDE_RS04535 4826be438efe8eaed88d2655a0ebbf05 220 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 118 201 5.6E-30 T 23-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 NIDE_RS04535 4826be438efe8eaed88d2655a0ebbf05 220 SUPERFAMILY SSF101386 117 207 5.05E-25 T 23-04-2016 NIDE_RS04535 4826be438efe8eaed88d2655a0ebbf05 220 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 115 201 21.178 T 23-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 NIDE_RS04535 4826be438efe8eaed88d2655a0ebbf05 220 PANTHER PTHR21256 2 212 1.2E-104 T 23-04-2016 NIDE_RS04535 4826be438efe8eaed88d2655a0ebbf05 220 SUPERFAMILY SSF141734 2 101 2.62E-44 T 23-04-2016 NIDE_RS04535 4826be438efe8eaed88d2655a0ebbf05 220 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 122 203 3.6E-14 T 23-04-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 NIDE_RS04535 4826be438efe8eaed88d2655a0ebbf05 220 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 23 96 5.4E-33 T 23-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 NIDE_RS04535 4826be438efe8eaed88d2655a0ebbf05 220 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 46 95 2.0E-16 T 23-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 Gene3D G3DSA:3.30.70.1430 40 141 2.4E-29 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 SUPERFAMILY SSF82693 556 653 3.4E-14 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 SUPERFAMILY SSF82714 710 789 4.05E-12 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 Gene3D G3DSA:3.30.70.1430 558 646 9.9E-9 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PANTHER PTHR32063 1 1021 0.0 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 SUPERFAMILY SSF82693 792 839 1.83E-12 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 SUPERFAMILY SSF82693 668 706 1.83E-12 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 SUPERFAMILY SSF82693 136 182 1.74E-22 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 SUPERFAMILY SSF82693 268 324 1.74E-22 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 SUPERFAMILY SSF82714 183 266 2.35E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PANTHER PTHR32063:SF21 1 1021 0.0 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 SUPERFAMILY SSF82866 816 1013 6.54E-44 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 SUPERFAMILY SSF82866 290 491 7.85E-47 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 Pfam PF00873 AcrB/AcrD/AcrF family 4 1012 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 SUPERFAMILY SSF82693 40 132 1.46E-23 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.7E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 4.7E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 4.7E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.7E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 4.7E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 4.7E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 4.7E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 4.7E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 4.7E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 Gene3D G3DSA:1.10.3850.10 797 1014 2.2E-56 T 23-04-2016 NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 Gene3D G3DSA:3.30.2090.10 711 791 1.2E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 Gene3D G3DSA:3.30.2090.10 183 262 1.1E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS16155 b6556ee1b498030deccb4baba69252b0 1037 Gene3D G3DSA:1.20.1640.10 285 497 1.1E-56 T 23-04-2016 NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 Gene3D G3DSA:3.40.50.2300 10 135 6.1E-28 T 23-04-2016 NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 Pfam PF00072 Response regulator receiver domain 11 127 1.8E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 Gene3D G3DSA:1.10.8.60 327 398 1.7E-26 T 23-04-2016 NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 Gene3D G3DSA:1.10.10.60 418 468 2.6E-4 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 SMART SM00448 9 127 1.8E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 SUPERFAMILY SSF52540 155 397 2.67E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 368 377 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 SUPERFAMILY SSF52172 10 199 4.55E-34 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 PANTHER PTHR32071 11 468 1.3E-152 T 23-04-2016 NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 Gene3D G3DSA:3.40.50.300 151 326 3.5E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 SMART SM00382 175 326 2.5E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 Pfam PF00158 Sigma-54 interaction domain 155 321 4.0E-61 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS14870 265121037a4dd820baa6e267bb3d657e 473 SUPERFAMILY SSF46689 368 468 3.0E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS04595 589ba5976335d59f1cb77c37e560fbd8 337 Gene3D G3DSA:1.10.1040.10 39 324 7.7E-117 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NIDE_RS04595 589ba5976335d59f1cb77c37e560fbd8 337 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 15 327 3.3E-138 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS04595 589ba5976335d59f1cb77c37e560fbd8 337 SUPERFAMILY SSF51735 1 181 1.32E-74 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04595 589ba5976335d59f1cb77c37e560fbd8 337 SUPERFAMILY SSF48179 182 331 4.42E-71 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS04595 589ba5976335d59f1cb77c37e560fbd8 337 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 1 327 45.341 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS04595 589ba5976335d59f1cb77c37e560fbd8 337 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 182 325 1.1E-67 T 23-04-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS04595 589ba5976335d59f1cb77c37e560fbd8 337 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 176 3.8E-75 T 23-04-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS04595 589ba5976335d59f1cb77c37e560fbd8 337 PANTHER PTHR21371 1 336 8.7E-203 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS04595 589ba5976335d59f1cb77c37e560fbd8 337 Gene3D G3DSA:3.50.50.60 5 38 2.2E-4 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 SUPERFAMILY SSF160544 247 354 3.27E-40 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 211 229 1.1E-32 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 9 31 1.1E-32 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 275 290 1.1E-32 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 231 248 1.1E-32 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 305 326 1.1E-32 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 6 355 3.3E-110 T 23-04-2016 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 PANTHER PTHR30531 1 356 7.5E-129 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 Pfam PF01312 FlhB HrpN YscU SpaS Family 6 350 6.8E-119 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 Gene3D G3DSA:3.40.1690.10 221 355 1.3E-55 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal NIDE_RS10545 4317a951c6bdfa603c756bc746fde880 360 PANTHER PTHR30531:SF0 1 356 7.5E-129 T 23-04-2016 NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 Pfam PF02347 Glycine cleavage system P-protein 485 739 6.4E-8 T 23-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 Pfam PF02347 Glycine cleavage system P-protein 16 444 3.1E-178 T 23-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 PANTHER PTHR11773 7 958 0.0 T 23-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 SUPERFAMILY SSF53383 933 956 6.83E-101 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 SUPERFAMILY SSF53383 479 890 6.83E-101 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 PANTHER PTHR11773:SF1 7 958 0.0 T 23-04-2016 NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 16 954 0.0 T 23-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 7 960 25.065 T 23-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 Gene3D G3DSA:3.40.640.10 85 305 6.9E-15 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 Gene3D G3DSA:3.40.640.10 506 756 1.7E-42 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS01430 7c65a8672fb0d715d95a26a152d20a4a 961 SUPERFAMILY SSF53383 16 443 4.69E-101 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS20480 fd359036d828239e800eea15152f8b27 355 SUPERFAMILY SSF52540 116 293 2.15E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20480 fd359036d828239e800eea15152f8b27 355 SMART SM00487 120 307 3.5E-21 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS20480 fd359036d828239e800eea15152f8b27 355 Pfam PF00270 DEAD/DEAH box helicase 133 277 5.8E-12 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NIDE_RS20480 fd359036d828239e800eea15152f8b27 355 Gene3D G3DSA:3.40.50.300 120 288 1.0E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07850 43c13917ab543d008c9237133d7fe75d 229 SMART SM01133 9 220 6.1E-80 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 NIDE_RS07850 43c13917ab543d008c9237133d7fe75d 229 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 217 2.2E-73 T 23-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 NIDE_RS07850 43c13917ab543d008c9237133d7fe75d 229 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 8 222 32.307 T 23-04-2016 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 NIDE_RS07850 43c13917ab543d008c9237133d7fe75d 229 PANTHER PTHR10889 5 229 1.2E-87 T 23-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 NIDE_RS07850 43c13917ab543d008c9237133d7fe75d 229 SUPERFAMILY SSF51569 4 221 1.57E-73 T 23-04-2016 NIDE_RS07850 43c13917ab543d008c9237133d7fe75d 229 Pfam PF01791 DeoC/LacD family aldolase 14 204 1.5E-11 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 NIDE_RS07850 43c13917ab543d008c9237133d7fe75d 229 Gene3D G3DSA:3.20.20.70 4 222 8.0E-83 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS07850 43c13917ab543d008c9237133d7fe75d 229 PIRSF PIRSF001357 4 228 6.9E-69 T 23-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 NIDE_RS12520 bb7175aed92f013a9e8d25619e2260b0 343 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 29 334 4.0E-128 T 23-04-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 NIDE_RS12520 bb7175aed92f013a9e8d25619e2260b0 343 PANTHER PTHR10233 5 337 5.9E-175 T 23-04-2016 NIDE_RS12520 bb7175aed92f013a9e8d25619e2260b0 343 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 1 341 41.519 T 23-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 NIDE_RS12520 bb7175aed92f013a9e8d25619e2260b0 343 PANTHER PTHR10233:SF6 5 337 5.9E-175 T 23-04-2016 NIDE_RS12520 bb7175aed92f013a9e8d25619e2260b0 343 SUPERFAMILY SSF100950 2 339 1.81E-125 T 23-04-2016 NIDE_RS12520 bb7175aed92f013a9e8d25619e2260b0 343 Gene3D G3DSA:1.20.120.420 3 153 8.9E-54 T 23-04-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 NIDE_RS12520 bb7175aed92f013a9e8d25619e2260b0 343 Pfam PF01008 Initiation factor 2 subunit family 43 334 3.0E-90 T 23-04-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 NIDE_RS12520 bb7175aed92f013a9e8d25619e2260b0 343 Gene3D G3DSA:3.40.50.10470 154 339 2.8E-76 T 23-04-2016 NIDE_RS12520 bb7175aed92f013a9e8d25619e2260b0 343 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 4 333 9.5E-139 T 23-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 NIDE_RS10175 03109d5b1360dbaaa379891521d655af 643 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 433 558 1.6E-24 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS10175 03109d5b1360dbaaa379891521d655af 643 Gene3D G3DSA:3.40.50.300 428 575 1.0E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10175 03109d5b1360dbaaa379891521d655af 643 PANTHER PTHR23073:SF24 433 607 1.5E-39 T 23-04-2016 NIDE_RS10175 03109d5b1360dbaaa379891521d655af 643 PANTHER PTHR23073 433 607 1.5E-39 T 23-04-2016 NIDE_RS10175 03109d5b1360dbaaa379891521d655af 643 SMART SM00382 428 560 2.4E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10175 03109d5b1360dbaaa379891521d655af 643 SUPERFAMILY SSF52540 426 600 2.03E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03560 1c349281a83b0a3e68926a9f5219de36 180 PIRSF PIRSF000847 1 179 2.5E-39 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 NIDE_RS03560 1c349281a83b0a3e68926a9f5219de36 180 PANTHER PTHR14269 3 176 5.0E-27 T 23-04-2016 NIDE_RS03560 1c349281a83b0a3e68926a9f5219de36 180 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 68 7.0E-15 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NIDE_RS03560 1c349281a83b0a3e68926a9f5219de36 180 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 46 68 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NIDE_RS07005 77f29cdf2b05eea03b91d7928940cd4a 184 SUPERFAMILY SSF49777 24 183 2.49E-52 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein NIDE_RS07005 77f29cdf2b05eea03b91d7928940cd4a 184 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 41 182 3.5E-44 T 23-04-2016 IPR005247 YbhB/YbcL NIDE_RS07005 77f29cdf2b05eea03b91d7928940cd4a 184 Gene3D G3DSA:3.90.280.10 24 184 1.6E-56 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein NIDE_RS07005 77f29cdf2b05eea03b91d7928940cd4a 184 PANTHER PTHR30289:SF0 1 184 1.9E-82 T 23-04-2016 NIDE_RS07005 77f29cdf2b05eea03b91d7928940cd4a 184 Pfam PF01161 Phosphatidylethanolamine-binding protein 46 182 6.5E-38 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein NIDE_RS07005 77f29cdf2b05eea03b91d7928940cd4a 184 PANTHER PTHR30289 1 184 1.9E-82 T 23-04-2016 NIDE_RS15765 2ab504835e56c3407e04f5ad8408cd33 431 Gene3D G3DSA:3.10.350.10 388 429 8.5E-14 T 23-04-2016 IPR018392 LysM domain NIDE_RS15765 2ab504835e56c3407e04f5ad8408cd33 431 Pfam PF01476 LysM domain 388 429 2.2E-10 T 23-04-2016 IPR018392 LysM domain NIDE_RS15765 2ab504835e56c3407e04f5ad8408cd33 431 Gene3D G3DSA:1.10.530.10 137 291 4.8E-45 T 23-04-2016 NIDE_RS15765 2ab504835e56c3407e04f5ad8408cd33 431 PANTHER PTHR21666 120 429 5.1E-77 T 23-04-2016 NIDE_RS15765 2ab504835e56c3407e04f5ad8408cd33 431 SUPERFAMILY SSF54106 387 429 1.31E-8 T 23-04-2016 IPR018392 LysM domain NIDE_RS15765 2ab504835e56c3407e04f5ad8408cd33 431 PANTHER PTHR21666:SF219 120 429 5.1E-77 T 23-04-2016 NIDE_RS15765 2ab504835e56c3407e04f5ad8408cd33 431 Pfam PF01464 Transglycosylase SLT domain 155 252 3.3E-25 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 NIDE_RS15765 2ab504835e56c3407e04f5ad8408cd33 431 SMART SM00257 387 430 1.3E-9 T 23-04-2016 IPR018392 LysM domain NIDE_RS15765 2ab504835e56c3407e04f5ad8408cd33 431 SUPERFAMILY SSF53955 141 292 9.65E-39 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 Gene3D G3DSA:3.30.70.1440 679 727 4.1E-15 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 Gene3D G3DSA:3.30.70.1440 824 855 4.1E-15 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 SUPERFAMILY SSF82714 729 815 5.23E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 Gene3D G3DSA:3.30.70.1430 580 677 1.2E-24 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 Pfam PF00873 AcrB/AcrD/AcrF family 3 1033 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PANTHER PTHR32063:SF11 1 1047 0.0 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1051 0.0 T 23-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PRINTS PR00702 Acriflavin resistance protein family signature 562 579 5.6E-92 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 5.6E-92 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 5.6E-92 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 5.6E-92 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 5.6E-92 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 5.6E-92 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 5.6E-92 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 5.6E-92 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PRINTS PR00702 Acriflavin resistance protein family signature 631 645 5.6E-92 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 SUPERFAMILY SSF82693 575 678 5.23E-23 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 SUPERFAMILY SSF82866 299 499 1.14E-51 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 Gene3D G3DSA:3.30.2090.10 184 278 3.4E-27 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 Gene3D G3DSA:3.30.2090.10 729 817 1.0E-15 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 SUPERFAMILY SSF82693 41 134 5.41E-26 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 SUPERFAMILY SSF82693 277 333 7.32E-25 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 SUPERFAMILY SSF82693 139 184 7.32E-25 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 Gene3D G3DSA:3.30.70.1430 41 141 3.0E-30 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 SUPERFAMILY SSF82866 841 1032 2.49E-43 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 Gene3D G3DSA:1.20.1640.10 856 1032 1.2E-44 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 Gene3D G3DSA:1.20.1640.10 295 506 1.7E-60 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 SUPERFAMILY SSF82693 679 728 6.8E-18 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 SUPERFAMILY SSF82693 815 865 6.8E-18 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 PANTHER PTHR32063 1 1047 0.0 T 23-04-2016 NIDE_RS13560 bd1fae7d49f12ffdb1a6b788182f3cbb 1065 SUPERFAMILY SSF82714 185 275 1.27E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS08770 2c969484e3fe5c9fd9152ead65e0db57 240 SMART SM00478 64 213 2.3E-45 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 NIDE_RS08770 2c969484e3fe5c9fd9152ead65e0db57 240 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 60 189 7.9E-15 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 NIDE_RS08770 2c969484e3fe5c9fd9152ead65e0db57 240 SUPERFAMILY SSF48150 30 234 2.51E-70 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 NIDE_RS08770 2c969484e3fe5c9fd9152ead65e0db57 240 PANTHER PTHR10359 30 234 1.9E-75 T 23-04-2016 NIDE_RS08770 2c969484e3fe5c9fd9152ead65e0db57 240 Gene3D G3DSA:1.10.1670.10 149 234 2.1E-34 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal NIDE_RS08770 2c969484e3fe5c9fd9152ead65e0db57 240 Pfam PF00633 Helix-hairpin-helix motif 124 153 1.4E-6 T 23-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 NIDE_RS08770 2c969484e3fe5c9fd9152ead65e0db57 240 Gene3D G3DSA:1.10.340.30 46 148 6.4E-38 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 NIDE_RS08770 2c969484e3fe5c9fd9152ead65e0db57 240 PIRSF PIRSF001435 26 239 4.8E-26 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 NIDE_RS19690 f97363c223ae42e1ac9e3a0a4bc032bc 258 SUPERFAMILY SSF54534 87 198 1.44E-18 T 23-04-2016 NIDE_RS19690 f97363c223ae42e1ac9e3a0a4bc032bc 258 Pfam PF13624 SurA N-terminal domain 2 63 1.7E-7 T 23-04-2016 NIDE_RS19690 f97363c223ae42e1ac9e3a0a4bc032bc 258 Gene3D G3DSA:3.10.50.40 106 225 9.8E-21 T 23-04-2016 NIDE_RS19690 f97363c223ae42e1ac9e3a0a4bc032bc 258 PANTHER PTHR10657:SF11 1 242 1.7E-27 T 23-04-2016 NIDE_RS19690 f97363c223ae42e1ac9e3a0a4bc032bc 258 PANTHER PTHR10657 1 242 1.7E-27 T 23-04-2016 NIDE_RS19690 f97363c223ae42e1ac9e3a0a4bc032bc 258 SUPERFAMILY SSF109998 1 136 3.73E-17 T 23-04-2016 IPR027304 Trigger factor/SurA domain NIDE_RS19690 f97363c223ae42e1ac9e3a0a4bc032bc 258 Pfam PF00639 PPIC-type PPIASE domain 126 198 1.4E-13 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 140 30.045 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 139 1.4E-63 T 23-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 4.0E-13 T 23-04-2016 NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 1.7E-25 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 Gene3D G3DSA:3.30.1550.10 2 71 5.4E-37 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 SUPERFAMILY SSF46906 67 139 3.66E-26 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 SMART SM00649 9 140 7.2E-82 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 SUPERFAMILY SSF54747 3 72 1.7E-29 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 PANTHER PTHR11661 1 139 1.4E-67 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 Gene3D G3DSA:1.10.10.250 72 140 4.1E-31 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 NIDE_RS06020 c1c63f540ac6db9f95f9dcc219212dd2 140 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 2.4E-29 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal NIDE_RS04970 3db57118f00f99e66a9837c5abb1194c 173 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 5 162 17.347 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 NIDE_RS04970 3db57118f00f99e66a9837c5abb1194c 173 PANTHER PTHR33695:SF1 5 170 5.2E-54 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 NIDE_RS04970 3db57118f00f99e66a9837c5abb1194c 173 Pfam PF01252 Signal peptidase (SPase) II 14 155 4.6E-37 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 NIDE_RS04970 3db57118f00f99e66a9837c5abb1194c 173 TIGRFAM TIGR00077 lspA: signal peptidase II 6 160 1.8E-38 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 NIDE_RS04970 3db57118f00f99e66a9837c5abb1194c 173 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 101 116 1.9E-17 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 NIDE_RS04970 3db57118f00f99e66a9837c5abb1194c 173 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 52 60 1.9E-17 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 NIDE_RS04970 3db57118f00f99e66a9837c5abb1194c 173 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 1.9E-17 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 NIDE_RS04970 3db57118f00f99e66a9837c5abb1194c 173 PANTHER PTHR33695 5 170 5.2E-54 T 23-04-2016 NIDE_RS04970 3db57118f00f99e66a9837c5abb1194c 173 ProSitePatterns PS00855 Signal peptidases II signature. 104 116 - T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 NIDE_RS09315 72eeb589c2a886e81c16891915dd02c3 219 Pfam PF01476 LysM domain 175 217 4.2E-13 T 23-04-2016 IPR018392 LysM domain NIDE_RS09315 72eeb589c2a886e81c16891915dd02c3 219 SUPERFAMILY SSF54106 174 216 1.57E-12 T 23-04-2016 IPR018392 LysM domain NIDE_RS09315 72eeb589c2a886e81c16891915dd02c3 219 Gene3D G3DSA:3.10.350.10 173 216 2.4E-17 T 23-04-2016 IPR018392 LysM domain NIDE_RS09315 72eeb589c2a886e81c16891915dd02c3 219 SMART SM00257 174 217 3.5E-15 T 23-04-2016 IPR018392 LysM domain NIDE_RS02370 3186d7ec18dda2f1e42146ebde0728d4 202 PIRSF PIRSF000709 2 177 2.1E-10 T 23-04-2016 NIDE_RS02370 3186d7ec18dda2f1e42146ebde0728d4 202 PANTHER PTHR23029 1 182 5.8E-44 T 23-04-2016 NIDE_RS02370 3186d7ec18dda2f1e42146ebde0728d4 202 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 23-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 NIDE_RS02370 3186d7ec18dda2f1e42146ebde0728d4 202 Gene3D G3DSA:3.40.50.1240 2 199 1.0E-50 T 23-04-2016 IPR029033 Histidine phosphatase superfamily NIDE_RS02370 3186d7ec18dda2f1e42146ebde0728d4 202 SUPERFAMILY SSF53254 1 199 4.71E-51 T 23-04-2016 IPR029033 Histidine phosphatase superfamily NIDE_RS02370 3186d7ec18dda2f1e42146ebde0728d4 202 SMART SM00855 3 155 4.2E-23 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 NIDE_RS02370 3186d7ec18dda2f1e42146ebde0728d4 202 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 193 5.3E-52 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 NIDE_RS02370 3186d7ec18dda2f1e42146ebde0728d4 202 PANTHER PTHR23029:SF1 1 182 5.8E-44 T 23-04-2016 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 426 564 6.9E-10 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 131 279 1.9E-41 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Gene3D G3DSA:3.30.413.10 422 564 1.4E-29 T 23-04-2016 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 PANTHER PTHR32439:SF0 320 571 6.9E-110 T 23-04-2016 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 PANTHER PTHR32439:SF0 48 283 6.9E-110 T 23-04-2016 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Gene3D G3DSA:3.30.413.10 132 282 5.7E-42 T 23-04-2016 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Gene3D G3DSA:3.30.110.40 759 828 5.4E-16 T 23-04-2016 IPR001455 TusA-like domain NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 PANTHER PTHR32439 320 571 6.9E-110 T 23-04-2016 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 PANTHER PTHR32439 48 283 6.9E-110 T 23-04-2016 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 56 121 1.5E-17 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 347 411 5.0E-18 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 SUPERFAMILY SSF64307 757 828 1.44E-14 T 23-04-2016 IPR001455 TusA-like domain NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 SUPERFAMILY SSF55124 263 287 1.01E-23 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 SUPERFAMILY SSF55124 334 435 1.01E-23 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Gene3D G3DSA:1.20.120.330 607 682 1.5E-10 T 23-04-2016 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 SUPERFAMILY SSF56014 132 282 3.53E-48 T 23-04-2016 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 SUPERFAMILY SSF55124 23 130 4.09E-26 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 PRINTS PR00397 Sirohaem Fe-binding site signature 424 442 2.8E-5 T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 PRINTS PR00397 Sirohaem Fe-binding site signature 470 488 2.8E-5 T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 182 198 - T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Gene3D G3DSA:3.90.480.10 340 415 2.6E-37 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Gene3D G3DSA:3.90.480.10 59 128 2.6E-37 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Pfam PF01206 Sulfurtransferase TusA 758 828 2.4E-14 T 23-04-2016 IPR001455 TusA-like domain NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 SUPERFAMILY SSF56014 422 580 5.37E-32 T 23-04-2016 NIDE_RS01880 66b349103a38ee8b01c93f4f451a3e03 831 Pfam PF05168 HEPN domain 609 658 9.6E-5 T 23-04-2016 IPR007842 HEPN domain NIDE_RS20160 944417c9d663e6b7369af976384fcf0a 221 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 36 184 6.0E-37 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 NIDE_RS20160 944417c9d663e6b7369af976384fcf0a 221 Pfam PF02527 rRNA small subunit methyltransferase G 34 184 9.8E-37 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 NIDE_RS20160 944417c9d663e6b7369af976384fcf0a 221 PANTHER PTHR31760 15 158 9.8E-38 T 23-04-2016 NIDE_RS20160 944417c9d663e6b7369af976384fcf0a 221 SUPERFAMILY SSF53335 21 205 3.54E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20160 944417c9d663e6b7369af976384fcf0a 221 PIRSF PIRSF003078 8 220 2.2E-37 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 NIDE_RS20160 944417c9d663e6b7369af976384fcf0a 221 Gene3D G3DSA:3.40.50.150 9 218 1.3E-43 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20160 944417c9d663e6b7369af976384fcf0a 221 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 23 215 21.925 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 NIDE_RS20160 944417c9d663e6b7369af976384fcf0a 221 PANTHER PTHR31760:SF0 15 158 9.8E-38 T 23-04-2016 NIDE_RS02610 b6661d7546eed8fd3dd11ea00483fa51 551 PANTHER PTHR11918 126 426 1.4E-55 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS02610 b6661d7546eed8fd3dd11ea00483fa51 551 Gene3D G3DSA:3.80.30.20 226 422 4.7E-30 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS02610 b6661d7546eed8fd3dd11ea00483fa51 551 SMART SM00729 224 443 8.9E-16 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS02610 b6661d7546eed8fd3dd11ea00483fa51 551 SUPERFAMILY SSF102114 223 398 2.88E-25 T 23-04-2016 NIDE_RS02610 b6661d7546eed8fd3dd11ea00483fa51 551 Pfam PF04055 Radical SAM superfamily 231 389 3.9E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS02610 b6661d7546eed8fd3dd11ea00483fa51 551 PANTHER PTHR11918:SF73 126 426 1.4E-55 T 23-04-2016 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SUPERFAMILY SSF55874 538 708 2.23E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SUPERFAMILY SSF52172 744 853 3.98E-16 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Gene3D G3DSA:3.40.50.2300 741 853 5.6E-16 T 23-04-2016 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Gene3D G3DSA:3.30.450.20 344 464 3.4E-24 T 23-04-2016 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Pfam PF08447 PAS fold 246 333 1.7E-21 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Pfam PF00512 His Kinase A (phospho-acceptor) domain 485 549 3.2E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 94 218 4.1E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 348 471 2.8E-16 T 23-04-2016 IPR000014 PAS domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 221 344 5.2E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 711 4.9E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SUPERFAMILY SSF55785 336 462 4.32E-22 T 23-04-2016 IPR000014 PAS domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Gene3D G3DSA:3.30.450.20 207 343 1.4E-35 T 23-04-2016 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SUPERFAMILY SSF55785 85 209 5.45E-24 T 23-04-2016 IPR000014 PAS domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SUPERFAMILY SSF47384 469 550 1.02E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Pfam PF00072 Response regulator receiver domain 745 844 2.6E-8 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Pfam PF00072 Response regulator receiver domain 889 1001 3.6E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Gene3D G3DSA:3.30.565.10 550 712 4.0E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SMART SM00086 297 339 1.8E-4 T 23-04-2016 IPR001610 PAC motif NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SUPERFAMILY SSF55785 208 337 2.42E-26 T 23-04-2016 IPR000014 PAS domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SMART SM00387 596 712 4.5E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Gene3D G3DSA:3.40.50.2300 886 1007 1.1E-39 T 23-04-2016 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Gene3D G3DSA:3.30.450.20 84 206 1.2E-24 T 23-04-2016 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 PRINTS PR00344 Bacterial sensor protein C-terminal signature 655 665 1.14E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 651 1.14E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 PRINTS PR00344 Bacterial sensor protein C-terminal signature 672 690 1.14E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 PRINTS PR00344 Bacterial sensor protein C-terminal signature 696 709 1.14E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SMART SM00091 98 164 0.0023 T 23-04-2016 IPR000014 PAS domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SMART SM00091 351 417 5.8E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SMART SM00091 223 291 1.7E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Pfam PF08448 PAS fold 105 213 9.8E-16 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Pfam PF08448 PAS fold 357 466 8.0E-20 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SUPERFAMILY SSF52172 886 1006 1.07E-35 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 PANTHER PTHR24423 886 1006 5.0E-202 T 23-04-2016 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 PANTHER PTHR24423 203 740 5.0E-202 T 23-04-2016 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 Gene3D G3DSA:1.10.287.130 477 545 1.3E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SMART SM00448 887 1001 2.5E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SMART SM00448 730 848 0.033 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08740 38e984c7613124a6f4ff676d5f32f34f 1013 SMART SM00388 484 549 9.2E-25 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 SMART SM00419 188 236 6.7E-13 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 SUPERFAMILY SSF51206 25 163 1.83E-31 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 PANTHER PTHR24567:SF32 25 243 4.3E-46 T 23-04-2016 NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 Pfam PF13545 Crp-like helix-turn-helix domain 169 241 2.0E-17 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 Gene3D G3DSA:1.10.10.10 167 244 1.9E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 210 225 7.3E-7 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 194 210 7.3E-7 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 SMART SM00100 30 149 2.4E-14 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 Gene3D G3DSA:2.60.120.10 25 163 9.4E-30 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 SUPERFAMILY SSF46785 167 243 4.08E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 Pfam PF00027 Cyclic nucleotide-binding domain 49 135 3.5E-17 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain NIDE_RS11625 d42b0812d94896cede8da2cf6b1059bc 246 PANTHER PTHR24567 25 243 4.3E-46 T 23-04-2016 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 399 416 2.5E-8 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 416 436 2.5E-8 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 SMART SM00382 143 286 4.8E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 SUPERFAMILY SSF52172 1 167 2.13E-41 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 Pfam PF00158 Sigma-54 interaction domain 123 290 3.0E-72 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 Pfam PF00072 Response regulator receiver domain 1 93 6.1E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 Pfam PF02954 Bacterial regulatory protein, Fis family 396 433 2.7E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 SUPERFAMILY SSF52540 122 365 1.25E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 Gene3D G3DSA:1.10.10.60 383 436 4.7E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 SUPERFAMILY SSF46689 389 435 4.44E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 PANTHER PTHR32071 1 435 2.0E-198 T 23-04-2016 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 209 224 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 Gene3D G3DSA:3.40.50.2300 1 110 4.5E-32 T 23-04-2016 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 SMART SM00448 1 94 4.3E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 Gene3D G3DSA:1.10.8.60 296 368 6.3E-24 T 23-04-2016 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 147 160 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS03575 63e13145a2047ea5a9ec447334f4b88a 440 Gene3D G3DSA:3.40.50.300 119 295 2.3E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14565 6bd379a61767de85ece3e87c75cc485d 317 Gene3D G3DSA:2.70.98.10 11 309 2.6E-55 T 23-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 NIDE_RS14565 6bd379a61767de85ece3e87c75cc485d 317 SUPERFAMILY SSF74650 16 312 1.0E-67 T 23-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 NIDE_RS14565 6bd379a61767de85ece3e87c75cc485d 317 PANTHER PTHR10091 19 315 1.4E-44 T 23-04-2016 NIDE_RS14565 6bd379a61767de85ece3e87c75cc485d 317 Pfam PF01263 Aldose 1-epimerase 19 310 2.7E-56 T 23-04-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 NIDE_RS19970 9f5045d74f2b49afb3ea268800e780ee 268 Gene3D G3DSA:3.20.180.10 173 262 1.9E-10 T 23-04-2016 IPR019595 Domain of unknown function DUF2470 NIDE_RS19970 9f5045d74f2b49afb3ea268800e780ee 268 Gene3D G3DSA:2.30.110.10 5 167 1.5E-55 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS19970 9f5045d74f2b49afb3ea268800e780ee 268 Pfam PF13883 Pyridoxamine 5'-phosphate oxidase 22 167 6.3E-28 T 23-04-2016 NIDE_RS19970 9f5045d74f2b49afb3ea268800e780ee 268 Pfam PF10615 Protein of unknown function (DUF2470) 180 251 1.1E-6 T 23-04-2016 IPR019595 Domain of unknown function DUF2470 NIDE_RS19970 9f5045d74f2b49afb3ea268800e780ee 268 PANTHER PTHR13343 16 268 5.2E-62 T 23-04-2016 NIDE_RS19970 9f5045d74f2b49afb3ea268800e780ee 268 SUPERFAMILY SSF50475 23 259 3.31E-48 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS13340 042cff000f2d3386d2803f61d5aaf05e 476 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 475 38.705 T 23-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 NIDE_RS13340 042cff000f2d3386d2803f61d5aaf05e 476 PANTHER PTHR11659:SF0 3 474 4.7E-243 T 23-04-2016 NIDE_RS13340 042cff000f2d3386d2803f61d5aaf05e 476 PANTHER PTHR11659 3 474 4.7E-243 T 23-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 NIDE_RS13340 042cff000f2d3386d2803f61d5aaf05e 476 Pfam PF02637 GatB domain 328 474 8.2E-51 T 23-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 NIDE_RS13340 042cff000f2d3386d2803f61d5aaf05e 476 SMART SM00845 327 474 7.3E-76 T 23-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 NIDE_RS13340 042cff000f2d3386d2803f61d5aaf05e 476 SUPERFAMILY SSF55931 4 295 5.17E-120 T 23-04-2016 NIDE_RS13340 042cff000f2d3386d2803f61d5aaf05e 476 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 2 474 2.9E-175 T 23-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 NIDE_RS13340 042cff000f2d3386d2803f61d5aaf05e 476 Pfam PF02934 GatB/GatE catalytic domain 5 288 6.5E-114 T 23-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 NIDE_RS13340 042cff000f2d3386d2803f61d5aaf05e 476 SUPERFAMILY SSF89095 296 402 2.35E-30 T 23-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 NIDE_RS13340 042cff000f2d3386d2803f61d5aaf05e 476 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 143 157 - T 23-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 NIDE_RS02555 5f0d4999dbafbdcf87403436555d7b40 565 Gene3D G3DSA:2.40.160.50 176 561 2.7E-58 T 23-04-2016 NIDE_RS02555 5f0d4999dbafbdcf87403436555d7b40 565 Gene3D G3DSA:3.10.20.310 65 141 1.4E-20 T 23-04-2016 NIDE_RS02555 5f0d4999dbafbdcf87403436555d7b40 565 Pfam PF01103 Surface antigen 405 535 5.3E-11 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 NIDE_RS02555 5f0d4999dbafbdcf87403436555d7b40 565 PANTHER PTHR34597 65 560 1.4E-65 T 23-04-2016 NIDE_RS02555 5f0d4999dbafbdcf87403436555d7b40 565 PANTHER PTHR34597:SF1 65 560 1.4E-65 T 23-04-2016 NIDE_RS02555 5f0d4999dbafbdcf87403436555d7b40 565 Pfam PF08479 POTRA domain, ShlB-type 68 141 2.7E-19 T 23-04-2016 IPR013686 Polypeptide-transport-associated, ShlB-type NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 Gene3D G3DSA:3.40.50.2300 7 158 5.9E-23 T 23-04-2016 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 SUPERFAMILY SSF46894 147 215 5.78E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 158 211 1.2E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 173 200 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 Pfam PF00072 Response regulator receiver domain 11 122 2.0E-15 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 PANTHER PTHR26402:SF151 9 212 2.1E-54 T 23-04-2016 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 189 9.8E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 201 9.8E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 173 9.8E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 SMART SM00448 9 122 1.7E-9 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 Gene3D G3DSA:1.10.10.10 159 215 8.0E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 SMART SM00421 156 213 2.2E-21 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 SUPERFAMILY SSF52172 8 138 1.71E-21 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS02705 b9a90308a23a21fecc19dc1a61b8671f 218 PANTHER PTHR26402 9 212 2.1E-54 T 23-04-2016 NIDE_RS04065 50e4001737df90ae5a7d2d3be4ed46ed 348 SUPERFAMILY SSF53448 4 233 1.22E-48 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS04065 50e4001737df90ae5a7d2d3be4ed46ed 348 Gene3D G3DSA:3.90.550.10 7 221 1.1E-37 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS04065 50e4001737df90ae5a7d2d3be4ed46ed 348 PANTHER PTHR22916 1 232 4.3E-34 T 23-04-2016 NIDE_RS04065 50e4001737df90ae5a7d2d3be4ed46ed 348 Pfam PF00535 Glycosyl transferase family 2 10 155 3.7E-23 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 939 1209 1.7E-124 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 SUPERFAMILY SSF56507 903 1226 1.44E-131 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 Pfam PF02310 B12 binding domain 749 842 6.3E-19 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 SUPERFAMILY SSF82282 5 400 1.83E-108 T 23-04-2016 IPR003726 Homocysteine-binding domain NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 SMART SM01018 655 738 7.4E-45 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 Pfam PF00809 Pterin binding enzyme 361 599 1.9E-62 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 Pfam PF02574 Homocysteine S-methyltransferase 15 326 1.6E-83 T 23-04-2016 IPR003726 Homocysteine-binding domain NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 Pfam PF02607 B12 binding domain 657 730 4.1E-26 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 TIGRFAM TIGR02082 metH: methionine synthase 11 1193 0.0 T 23-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 PANTHER PTHR21091 6 399 4.5E-141 T 23-04-2016 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 Gene3D G3DSA:3.10.196.10 958 1226 4.1E-112 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 PIRSF PIRSF000381 1 1196 0.0 T 23-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 SUPERFAMILY SSF47644 650 737 2.35E-29 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 Gene3D G3DSA:3.40.50.280 747 895 4.7E-61 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 Gene3D G3DSA:3.20.20.20 365 637 2.0E-112 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 SUPERFAMILY SSF51717 357 631 8.24E-89 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 SUPERFAMILY SSF52242 745 895 6.02E-44 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 Gene3D G3DSA:1.10.1240.10 648 735 5.6E-39 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 PANTHER PTHR21091:SF97 6 399 4.5E-141 T 23-04-2016 NIDE_RS08555 e48f11e3ed3decb3a7d324b122451688 1227 Gene3D G3DSA:3.20.20.330 4 364 1.2E-116 T 23-04-2016 IPR003726 Homocysteine-binding domain NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 Gene3D G3DSA:3.30.70.890 169 279 7.6E-29 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 6 288 30.404 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 SUPERFAMILY SSF55060 169 277 2.16E-22 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 7 284 2.5E-62 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 PANTHER PTHR20861:SF2 1 275 1.7E-85 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 PIRSF PIRSF010376 4 299 1.1E-77 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 Pfam PF00288 GHMP kinases N terminal domain 92 148 2.4E-9 T 23-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 Pfam PF08544 GHMP kinases C terminal 213 277 5.1E-7 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 Gene3D G3DSA:3.30.230.10 8 163 3.8E-47 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 SUPERFAMILY SSF54211 6 160 2.81E-37 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS03580 56cd4229397c1b69c30297b9372e33df 304 PANTHER PTHR20861 1 275 1.7E-85 T 23-04-2016 NIDE_RS06675 809dafb252e67e10a9e5fbc0c433c5fc 545 Pfam PF03321 GH3 auxin-responsive promoter 28 527 7.5E-93 T 23-04-2016 IPR004993 GH3 family KEGG: 00220+6.3.2.-|KEGG: 00261+6.3.2.-|KEGG: 00380+6.3.2.- NIDE_RS06675 809dafb252e67e10a9e5fbc0c433c5fc 545 PANTHER PTHR31901:SF5 36 527 2.0E-53 T 23-04-2016 NIDE_RS06675 809dafb252e67e10a9e5fbc0c433c5fc 545 PANTHER PTHR31901 36 527 2.0E-53 T 23-04-2016 IPR004993 GH3 family KEGG: 00220+6.3.2.-|KEGG: 00261+6.3.2.-|KEGG: 00380+6.3.2.- NIDE_RS06675 809dafb252e67e10a9e5fbc0c433c5fc 545 ProSitePatterns PS00455 Putative AMP-binding domain signature. 102 113 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS10000 9fa889fece94a6e4da19c0ae8dad614c 173 Gene3D G3DSA:1.10.1740.10 13 79 6.6E-13 T 23-04-2016 NIDE_RS10000 9fa889fece94a6e4da19c0ae8dad614c 173 PANTHER PTHR30173:SF30 13 166 1.4E-37 T 23-04-2016 NIDE_RS10000 9fa889fece94a6e4da19c0ae8dad614c 173 SUPERFAMILY SSF88659 92 167 7.29E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10000 9fa889fece94a6e4da19c0ae8dad614c 173 Pfam PF08281 Sigma-70, region 4 115 162 9.3E-13 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10000 9fa889fece94a6e4da19c0ae8dad614c 173 Gene3D G3DSA:1.10.10.10 103 168 5.0E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS10000 9fa889fece94a6e4da19c0ae8dad614c 173 Pfam PF04542 Sigma-70 region 2 13 77 5.3E-11 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10000 9fa889fece94a6e4da19c0ae8dad614c 173 PANTHER PTHR30173 13 166 1.4E-37 T 23-04-2016 NIDE_RS10000 9fa889fece94a6e4da19c0ae8dad614c 173 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 166 2.9E-21 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10000 9fa889fece94a6e4da19c0ae8dad614c 173 SUPERFAMILY SSF88946 10 74 1.18E-12 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS20800 cf7516c6e32d4bef8c9ae6acad1b7cee 703 Pfam PF07940 Heparinase II/III-like protein 450 675 2.0E-34 T 23-04-2016 IPR012480 Heparinase II/III-like MetaCyc: PWY-7651 NIDE_RS20800 cf7516c6e32d4bef8c9ae6acad1b7cee 703 Gene3D G3DSA:1.50.10.110 175 380 5.5E-21 T 23-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 NIDE_RS20800 cf7516c6e32d4bef8c9ae6acad1b7cee 703 Pfam PF16889 Heparinase II/III N-terminus 131 385 6.9E-37 T 23-04-2016 IPR031680 Heparin-sulfate lyase, N-terminal MetaCyc: PWY-7651 NIDE_RS20800 cf7516c6e32d4bef8c9ae6acad1b7cee 703 SUPERFAMILY SSF48230 164 405 1.28E-42 T 23-04-2016 IPR008929 Chondroitin AC/alginate lyase NIDE_RS20800 cf7516c6e32d4bef8c9ae6acad1b7cee 703 PANTHER PTHR39210 21 608 8.7E-53 T 23-04-2016 NIDE_RS02865 81d8551a03e30220868f30eb57c6d5cb 337 Gene3D G3DSA:3.30.420.10 180 325 2.1E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS02865 81d8551a03e30220868f30eb57c6d5cb 337 Pfam PF00665 Integrase core domain 180 285 5.5E-10 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS02865 81d8551a03e30220868f30eb57c6d5cb 337 PANTHER PTHR10948 1 337 4.0E-93 T 23-04-2016 NIDE_RS02865 81d8551a03e30220868f30eb57c6d5cb 337 SUPERFAMILY SSF53098 180 328 3.49E-22 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS02865 81d8551a03e30220868f30eb57c6d5cb 337 Gene3D G3DSA:1.10.10.10 5 47 3.7E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02865 81d8551a03e30220868f30eb57c6d5cb 337 ProSitePatterns PS01043 Transposases, IS30 family, signature. 272 288 - T 23-04-2016 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 NIDE_RS02865 81d8551a03e30220868f30eb57c6d5cb 337 Pfam PF13936 Helix-turn-helix domain 6 48 3.0E-16 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 Pfam PF00501 AMP-binding enzyme 57 462 4.7E-83 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 Gene3D G3DSA:3.30.300.30 457 556 4.3E-21 T 23-04-2016 NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 SUPERFAMILY SSF56801 13 567 1.13E-121 T 23-04-2016 NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 PANTHER PTHR24096 59 554 2.2E-112 T 23-04-2016 NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 Gene3D G3DSA:3.40.50.980 208 359 3.1E-39 T 23-04-2016 NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 Gene3D G3DSA:2.30.38.10 377 444 3.4E-19 T 23-04-2016 NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 Gene3D G3DSA:3.40.50.980 50 207 8.5E-29 T 23-04-2016 NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 PRINTS PR00154 AMP-binding signature 197 208 6.31E-5 T 23-04-2016 IPR020459 AMP-binding NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 PRINTS PR00154 AMP-binding signature 209 217 6.31E-5 T 23-04-2016 IPR020459 AMP-binding NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 Pfam PF13193 AMP-binding enzyme C-terminal domain 471 547 7.4E-8 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS14340 14db457c1a1e0c5242998c4afb9927c7 573 ProSitePatterns PS00455 Putative AMP-binding domain signature. 202 213 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 PANTHER PTHR32071 5 448 7.1E-183 T 23-04-2016 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 Pfam PF00072 Response regulator receiver domain 5 114 2.7E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 Pfam PF02954 Bacterial regulatory protein, Fis family 412 443 2.9E-6 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 SMART SM00382 161 308 5.6E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 SUPERFAMILY SSF52172 5 186 8.4E-47 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 Pfam PF00158 Sigma-54 interaction domain 144 307 2.0E-66 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 SUPERFAMILY SSF46689 354 447 5.82E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 Gene3D G3DSA:1.10.10.60 412 443 1.5E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 411 428 1.1E-6 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 428 448 1.1E-6 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 Gene3D G3DSA:3.40.50.300 148 313 3.0E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 SUPERFAMILY SSF52540 145 382 3.89E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 Gene3D G3DSA:3.40.50.2300 3 147 1.6E-42 T 23-04-2016 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 Gene3D G3DSA:1.10.8.60 314 388 4.9E-24 T 23-04-2016 NIDE_RS09220 ab6cf3e938ac61cd1c972dccf60ecece 448 SMART SM00448 3 114 2.1E-40 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS04420 7b7c4ee0ef3af7b9cce3dfc103f61320 329 PIRSF PIRSF005211 2 329 9.0E-83 T 23-04-2016 IPR012020 AB hydrolase 4 family KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- NIDE_RS04420 7b7c4ee0ef3af7b9cce3dfc103f61320 329 Pfam PF12697 Alpha/beta hydrolase family 66 304 2.7E-14 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS04420 7b7c4ee0ef3af7b9cce3dfc103f61320 329 PANTHER PTHR10794 7 323 3.9E-49 T 23-04-2016 NIDE_RS04420 7b7c4ee0ef3af7b9cce3dfc103f61320 329 Gene3D G3DSA:3.40.50.1820 57 325 1.1E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS04420 7b7c4ee0ef3af7b9cce3dfc103f61320 329 SUPERFAMILY SSF53474 36 303 3.32E-40 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS04420 7b7c4ee0ef3af7b9cce3dfc103f61320 329 PRINTS PR00111 Alpha/beta hydrolase fold signature 140 153 6.2E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS04420 7b7c4ee0ef3af7b9cce3dfc103f61320 329 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 107 6.2E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS04420 7b7c4ee0ef3af7b9cce3dfc103f61320 329 PRINTS PR00111 Alpha/beta hydrolase fold signature 262 276 6.2E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS13695 c055e9ed2c360fd9a3b3bc8519ea2cee 281 Gene3D G3DSA:3.40.50.150 188 237 1.7E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13695 c055e9ed2c360fd9a3b3bc8519ea2cee 281 Gene3D G3DSA:3.40.50.150 30 156 1.7E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13695 c055e9ed2c360fd9a3b3bc8519ea2cee 281 SUPERFAMILY SSF53335 24 148 4.42E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13695 c055e9ed2c360fd9a3b3bc8519ea2cee 281 SUPERFAMILY SSF53335 182 239 4.42E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13695 c055e9ed2c360fd9a3b3bc8519ea2cee 281 Pfam PF13489 Methyltransferase domain 36 225 1.9E-17 T 23-04-2016 NIDE_RS13695 c055e9ed2c360fd9a3b3bc8519ea2cee 281 PANTHER PTHR10108 184 227 1.4E-19 T 23-04-2016 NIDE_RS13695 c055e9ed2c360fd9a3b3bc8519ea2cee 281 PANTHER PTHR10108 14 145 1.4E-19 T 23-04-2016 NIDE_RS03460 67dce0486341b5d52bb8278bffbd12d5 572 Pfam PF03717 Penicillin-binding Protein dimerisation domain 54 196 9.3E-15 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 NIDE_RS03460 67dce0486341b5d52bb8278bffbd12d5 572 Gene3D G3DSA:3.90.1310.10 122 222 2.8E-23 T 23-04-2016 NIDE_RS03460 67dce0486341b5d52bb8278bffbd12d5 572 Gene3D G3DSA:3.40.710.10 223 555 6.4E-101 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS03460 67dce0486341b5d52bb8278bffbd12d5 572 SUPERFAMILY SSF56519 50 215 4.45E-38 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 NIDE_RS03460 67dce0486341b5d52bb8278bffbd12d5 572 PANTHER PTHR30627 6 568 3.8E-186 T 23-04-2016 NIDE_RS03460 67dce0486341b5d52bb8278bffbd12d5 572 PANTHER PTHR30627:SF1 6 568 3.8E-186 T 23-04-2016 NIDE_RS03460 67dce0486341b5d52bb8278bffbd12d5 572 SUPERFAMILY SSF56601 167 562 1.46E-102 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS03460 67dce0486341b5d52bb8278bffbd12d5 572 Pfam PF00905 Penicillin binding protein transpeptidase domain 241 547 1.5E-79 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 NIDE_RS12670 dadbbba2798465759a9338e04bab8497 241 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 237 5.8E-98 T 23-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 NIDE_RS12670 dadbbba2798465759a9338e04bab8497 241 Gene3D G3DSA:3.40.1160.10 3 237 8.9E-84 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS12670 dadbbba2798465759a9338e04bab8497 241 Pfam PF00696 Amino acid kinase family 8 216 2.2E-25 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS12670 dadbbba2798465759a9338e04bab8497 241 PANTHER PTHR21499:SF20 6 241 1.2E-112 T 23-04-2016 NIDE_RS12670 dadbbba2798465759a9338e04bab8497 241 SUPERFAMILY SSF53633 5 237 1.31E-69 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS12670 dadbbba2798465759a9338e04bab8497 241 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 237 43.709 T 23-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 NIDE_RS12670 dadbbba2798465759a9338e04bab8497 241 PANTHER PTHR21499 6 241 1.2E-112 T 23-04-2016 NIDE_RS12670 dadbbba2798465759a9338e04bab8497 241 PIRSF PIRSF005650 1 241 2.4E-92 T 23-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 NIDE_RS05060 50b692e4cd256a9d5c348b8adf3e239a 114 SUPERFAMILY SSF81301 7 113 6.05E-36 T 23-04-2016 NIDE_RS05060 50b692e4cd256a9d5c348b8adf3e239a 114 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 4 108 23.597 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS NIDE_RS05060 50b692e4cd256a9d5c348b8adf3e239a 114 Pfam PF02410 Ribosomal silencing factor during starvation 13 107 8.7E-25 T 23-04-2016 NIDE_RS05060 50b692e4cd256a9d5c348b8adf3e239a 114 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 12 107 3.9E-33 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS NIDE_RS05060 50b692e4cd256a9d5c348b8adf3e239a 114 Gene3D G3DSA:3.30.460.10 6 110 6.2E-35 T 23-04-2016 NIDE_RS05060 50b692e4cd256a9d5c348b8adf3e239a 114 PANTHER PTHR21043 5 113 2.6E-37 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 3 459 1.3E-154 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 PRINTS PR01050 Pyruvate kinase family signature 59 75 1.2E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 PRINTS PR01050 Pyruvate kinase family signature 266 290 1.2E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 PRINTS PR01050 Pyruvate kinase family signature 184 198 1.2E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 PRINTS PR01050 Pyruvate kinase family signature 241 265 1.2E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 PRINTS PR01050 Pyruvate kinase family signature 214 240 1.2E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 PRINTS PR01050 Pyruvate kinase family signature 310 326 1.2E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 PRINTS PR01050 Pyruvate kinase family signature 291 309 1.2E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 PANTHER PTHR11817 1 477 6.1E-202 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 Gene3D G3DSA:2.40.33.10 73 166 1.0E-25 T 23-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 SUPERFAMILY SSF51621 165 334 8.72E-92 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 SUPERFAMILY SSF51621 1 75 8.72E-92 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 Pfam PF00224 Pyruvate kinase, barrel domain 2 334 8.1E-121 T 23-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 Gene3D G3DSA:3.20.20.60 167 322 1.3E-101 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 Gene3D G3DSA:3.20.20.60 3 72 1.3E-101 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 Pfam PF02887 Pyruvate kinase, alpha/beta domain 354 452 2.2E-16 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 SUPERFAMILY SSF50800 70 165 8.72E-22 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 SUPERFAMILY SSF52935 320 452 4.32E-22 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS12875 9a17f2a1909e98bdcfab82532c78f8b6 478 Gene3D G3DSA:3.40.1380.20 323 464 9.8E-27 T 23-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS18075 54d25f5341e0d5566d56e7b5a898d1f4 532 PANTHER PTHR30386:SF8 214 518 1.2E-37 T 23-04-2016 NIDE_RS18075 54d25f5341e0d5566d56e7b5a898d1f4 532 PANTHER PTHR30386 97 198 1.2E-37 T 23-04-2016 NIDE_RS18075 54d25f5341e0d5566d56e7b5a898d1f4 532 SUPERFAMILY SSF111369 132 253 8.76E-6 T 23-04-2016 NIDE_RS18075 54d25f5341e0d5566d56e7b5a898d1f4 532 Gene3D G3DSA:2.40.50.100 362 396 8.1E-12 T 23-04-2016 NIDE_RS18075 54d25f5341e0d5566d56e7b5a898d1f4 532 Gene3D G3DSA:2.40.50.100 146 177 8.1E-12 T 23-04-2016 NIDE_RS18075 54d25f5341e0d5566d56e7b5a898d1f4 532 Pfam PF13533 Biotin-lipoyl like 146 177 2.0E-6 T 23-04-2016 NIDE_RS18075 54d25f5341e0d5566d56e7b5a898d1f4 532 PANTHER PTHR30386:SF8 97 198 1.2E-37 T 23-04-2016 NIDE_RS18075 54d25f5341e0d5566d56e7b5a898d1f4 532 PANTHER PTHR30386 214 518 1.2E-37 T 23-04-2016 NIDE_RS00625 9a214f4d56b4d53504ab33148efe51c1 1040 Pfam PF04465 Protein of unknown function (DUF499) 129 376 2.3E-22 T 23-04-2016 IPR007555 Protein of unknown function DUF499 NIDE_RS00625 9a214f4d56b4d53504ab33148efe51c1 1040 PANTHER PTHR41711 2 924 4.6E-95 T 23-04-2016 NIDE_RS00625 9a214f4d56b4d53504ab33148efe51c1 1040 PANTHER PTHR41711:SF1 2 924 4.6E-95 T 23-04-2016 NIDE_RS00625 9a214f4d56b4d53504ab33148efe51c1 1040 Pfam PF13287 Fn3 associated 857 902 2.0E-6 T 23-04-2016 IPR026876 Fn3 associated repeat NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 Gene3D G3DSA:3.30.450.40 181 351 1.0E-18 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 Pfam PF02954 Bacterial regulatory protein, Fis family 626 670 5.9E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 Pfam PF13185 GAF domain 250 335 5.2E-10 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 456 471 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 SUPERFAMILY SSF46689 581 672 3.05E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 Gene3D G3DSA:1.10.10.60 623 669 7.9E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 PANTHER PTHR32071 339 675 3.0E-150 T 23-04-2016 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 583 592 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 Gene3D G3DSA:1.10.8.60 543 613 3.5E-27 T 23-04-2016 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 Gene3D G3DSA:3.30.450.40 11 171 2.1E-10 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 SMART SM00382 390 537 2.1E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 Gene3D G3DSA:3.40.50.300 368 542 1.1E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 SUPERFAMILY SSF52540 370 611 3.89E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 SMART SM00065 200 344 0.015 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 SMART SM00065 22 181 3.6E-8 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 Pfam PF00158 Sigma-54 interaction domain 370 536 5.3E-69 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 SUPERFAMILY SSF55781 28 179 2.12E-11 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 SUPERFAMILY SSF55781 197 347 4.58E-18 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 Pfam PF01590 GAF domain 29 168 3.8E-5 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20885 96dcc5984ba848874229d934d55773e1 680 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 394 407 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS20910 aff37bc3416376b50664f3234102d5df 243 PANTHER PTHR30128:SF18 104 239 1.6E-41 T 23-04-2016 NIDE_RS20910 aff37bc3416376b50664f3234102d5df 243 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 138 239 1.7E-37 T 23-04-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 NIDE_RS20910 aff37bc3416376b50664f3234102d5df 243 PANTHER PTHR30128 104 239 1.6E-41 T 23-04-2016 NIDE_RS20910 aff37bc3416376b50664f3234102d5df 243 PRINTS PR01021 OMPA domain signature 170 185 1.6E-14 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS20910 aff37bc3416376b50664f3234102d5df 243 PRINTS PR01021 OMPA domain signature 140 162 1.6E-14 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS20910 aff37bc3416376b50664f3234102d5df 243 PRINTS PR01021 OMPA domain signature 185 201 1.6E-14 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS20910 aff37bc3416376b50664f3234102d5df 243 SUPERFAMILY SSF103088 136 240 6.8E-32 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20910 aff37bc3416376b50664f3234102d5df 243 Pfam PF00691 OmpA family 139 234 6.1E-20 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20910 aff37bc3416376b50664f3234102d5df 243 Gene3D G3DSA:3.30.1330.60 136 240 2.1E-32 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS16050 6e4df914918b4437c9166230f1c8edeb 184 SUPERFAMILY SSF55729 3 175 2.5E-45 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS16050 6e4df914918b4437c9166230f1c8edeb 184 PANTHER PTHR13256:SF10 1 177 2.0E-40 T 23-04-2016 NIDE_RS16050 6e4df914918b4437c9166230f1c8edeb 184 Pfam PF13302 Acetyltransferase (GNAT) domain 11 150 5.0E-30 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS16050 6e4df914918b4437c9166230f1c8edeb 184 Gene3D G3DSA:3.40.630.30 3 178 3.5E-51 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS16050 6e4df914918b4437c9166230f1c8edeb 184 PANTHER PTHR13256 1 177 2.0E-40 T 23-04-2016 NIDE_RS15215 557dabe2bc67698c02d802117b242681 665 SUPERFAMILY SSF56784 301 421 4.68E-10 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS15215 557dabe2bc67698c02d802117b242681 665 TIGRFAM TIGR01686 FkbH: FkbH domain 301 626 2.3E-86 T 23-04-2016 IPR010037 FkbH domain NIDE_RS15215 557dabe2bc67698c02d802117b242681 665 Gene3D G3DSA:3.40.50.1000 302 422 2.4E-11 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS15215 557dabe2bc67698c02d802117b242681 665 Pfam PF03031 NLI interacting factor-like phosphatase 302 418 1.9E-5 T 23-04-2016 IPR004274 FCP1 homology domain NIDE_RS15215 557dabe2bc67698c02d802117b242681 665 Gene3D G3DSA:1.25.40.10 17 74 2.9E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15215 557dabe2bc67698c02d802117b242681 665 SUPERFAMILY SSF55729 495 632 1.02E-6 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS15215 557dabe2bc67698c02d802117b242681 665 TIGRFAM TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC 302 425 1.3E-16 T 23-04-2016 IPR010033 HAD-superfamily phosphatase, subfamily IIIC NIDE_RS15215 557dabe2bc67698c02d802117b242681 665 Gene3D G3DSA:3.40.630.30 492 637 1.2E-5 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS13205 8d599a1ebcc6dad8f1c9a8e69f5cfe19 420 Pfam PF16254 Domain of unknown function (DUF4910) 2 340 1.1E-115 T 23-04-2016 IPR032589 Domain of unknown function DUF4910 NIDE_RS13205 8d599a1ebcc6dad8f1c9a8e69f5cfe19 420 PIRSF PIRSF015244 1 419 1.2E-189 T 23-04-2016 IPR012353 Uncharacterised conserved protein UCP01524, polysaccharide biosynthesis aminopeptidase-like NIDE_RS13205 8d599a1ebcc6dad8f1c9a8e69f5cfe19 420 SUPERFAMILY SSF53187 76 338 2.78E-33 T 23-04-2016 NIDE_RS13205 8d599a1ebcc6dad8f1c9a8e69f5cfe19 420 Pfam PF09940 Domain of unknown function (DUF2172) 52 143 4.0E-40 T 23-04-2016 IPR032610 Domain of unknown function DUF2172 NIDE_RS13205 8d599a1ebcc6dad8f1c9a8e69f5cfe19 420 Pfam PF16221 winged helix-turn-helix 342 417 4.5E-31 T 23-04-2016 IPR032622 UCP01524, winged helix-turn-helix domain NIDE_RS13205 8d599a1ebcc6dad8f1c9a8e69f5cfe19 420 Gene3D G3DSA:3.40.630.10 161 338 6.6E-10 T 23-04-2016 NIDE_RS15775 7e6ee7c5a9635a07a8dbf574de423e98 386 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 15 376 1.2E-139 T 23-04-2016 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147|UniPathway: UPA00078 NIDE_RS15775 7e6ee7c5a9635a07a8dbf574de423e98 386 Pfam PF00155 Aminotransferase class I and II 35 376 2.9E-67 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NIDE_RS15775 7e6ee7c5a9635a07a8dbf574de423e98 386 PANTHER PTHR13693 2 386 1.3E-176 T 23-04-2016 NIDE_RS15775 7e6ee7c5a9635a07a8dbf574de423e98 386 SUPERFAMILY SSF53383 2 384 1.34E-116 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS15775 7e6ee7c5a9635a07a8dbf574de423e98 386 Gene3D G3DSA:3.90.1150.10 269 379 1.9E-33 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS15775 7e6ee7c5a9635a07a8dbf574de423e98 386 Gene3D G3DSA:3.40.640.10 52 268 1.8E-90 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS15775 7e6ee7c5a9635a07a8dbf574de423e98 386 PANTHER PTHR13693:SF53 2 386 1.3E-176 T 23-04-2016 NIDE_RS02010 b077346768ed13b55dbbf50e79de1f3a 309 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 62 284 1.3E-51 T 23-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 NIDE_RS02010 b077346768ed13b55dbbf50e79de1f3a 309 SUPERFAMILY SSF56601 9 32 4.77E-60 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS02010 b077346768ed13b55dbbf50e79de1f3a 309 SUPERFAMILY SSF56601 63 298 4.77E-60 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS02010 b077346768ed13b55dbbf50e79de1f3a 309 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 166 179 1.1E-12 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NIDE_RS02010 b077346768ed13b55dbbf50e79de1f3a 309 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 139 156 1.1E-12 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NIDE_RS02010 b077346768ed13b55dbbf50e79de1f3a 309 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 91 102 1.1E-12 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 NIDE_RS02010 b077346768ed13b55dbbf50e79de1f3a 309 PANTHER PTHR21581:SF1 52 299 3.3E-62 T 23-04-2016 NIDE_RS02010 b077346768ed13b55dbbf50e79de1f3a 309 PANTHER PTHR21581 52 299 3.3E-62 T 23-04-2016 NIDE_RS02010 b077346768ed13b55dbbf50e79de1f3a 309 Gene3D G3DSA:3.40.710.10 62 298 1.4E-73 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 Pfam PF06827 Zinc finger found in FPG and IleRS 910 935 1.3E-5 T 23-04-2016 IPR010663 Zinc finger, FPG/IleRS-type NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 PANTHER PTHR11946:SF11 286 917 0.0 T 23-04-2016 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 PANTHER PTHR11946:SF11 5 262 0.0 T 23-04-2016 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 Gene3D G3DSA:1.10.730.10 655 843 3.3E-50 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 Gene3D G3DSA:3.90.740.10 205 400 4.5E-52 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 57 68 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 412 427 4.4E-32 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 241 264 4.4E-32 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 575 584 4.4E-32 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 543 556 4.4E-32 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 50 61 4.4E-32 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 SUPERFAMILY SSF50677 203 414 7.01E-50 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 856 2.7E-281 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 SUPERFAMILY SSF47323 666 938 2.24E-75 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 27 655 8.9E-201 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 Pfam PF08264 Anticodon-binding domain of tRNA 699 858 1.7E-29 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 Gene3D G3DSA:3.40.50.620 12 199 5.6E-139 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 Gene3D G3DSA:3.40.50.620 417 650 5.6E-139 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 SUPERFAMILY SSF52374 1 201 4.61E-145 T 23-04-2016 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 SUPERFAMILY SSF52374 414 661 4.61E-145 T 23-04-2016 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 1 939 20.733 T 23-04-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 PANTHER PTHR11946 286 917 0.0 T 23-04-2016 NIDE_RS04965 2752f0bbbc049e6710657e91267597b3 939 PANTHER PTHR11946 5 262 0.0 T 23-04-2016 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 SUPERFAMILY SSF56059 4 352 8.36E-67 T 23-04-2016 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 SUPERFAMILY SSF52009 768 871 3.53E-22 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 Gene3D G3DSA:3.30.1490.20 14 182 3.8E-40 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 Pfam PF00391 PEP-utilising enzyme, mobile domain 798 869 3.6E-15 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 PANTHER PTHR22931 5 372 1.0E-99 T 23-04-2016 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 PANTHER PTHR22931 783 871 1.0E-99 T 23-04-2016 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 317 4.7E-70 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 Gene3D G3DSA:3.30.470.20 184 324 5.6E-38 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 Gene3D G3DSA:3.50.30.10 768 871 1.3E-18 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 PANTHER PTHR22931:SF7 5 372 1.0E-99 T 23-04-2016 NIDE_RS02280 3faf6c9886fd6cd7502196e4605e72a5 876 PANTHER PTHR22931:SF7 783 871 1.0E-99 T 23-04-2016 NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 SUPERFAMILY SSF55781 7 170 3.49E-21 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 Gene3D G3DSA:1.10.10.60 424 500 8.2E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 Gene3D G3DSA:3.40.50.300 196 370 1.3E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 Gene3D G3DSA:1.10.8.60 371 423 1.5E-24 T 23-04-2016 NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 Gene3D G3DSA:3.30.450.40 7 178 8.7E-25 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 Pfam PF00158 Sigma-54 interaction domain 199 365 5.1E-71 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 PANTHER PTHR32071 166 502 1.3E-142 T 23-04-2016 NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 SMART SM00065 23 172 1.3E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 PANTHER PTHR32071:SF16 166 502 1.3E-142 T 23-04-2016 NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 284 299 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 SMART SM00382 218 362 1.1E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 411 420 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 Pfam PF13185 GAF domain 22 163 8.1E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 222 235 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS14795 da1e54a93bae1c13bc8cd731908e4130 506 SUPERFAMILY SSF52540 198 436 5.08E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 PANTHER PTHR24103:SF378 153 438 7.8E-76 T 23-04-2016 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 SUPERFAMILY SSF49265 463 547 1.41E-5 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Pfam PF01436 NHL repeat 269 296 2.2E-8 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Pfam PF01436 NHL repeat 410 437 6.1E-8 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Pfam PF01436 NHL repeat 217 244 2.9E-9 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Pfam PF01436 NHL repeat 824 852 4.4E-8 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Pfam PF01436 NHL repeat 365 390 9.6E-6 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Pfam PF01436 NHL repeat 776 804 2.5E-5 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Pfam PF01436 NHL repeat 728 755 4.0E-8 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Pfam PF01436 NHL repeat 686 708 6.8E-5 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Pfam PF01436 NHL repeat 886 913 2.6E-9 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Pfam PF01436 NHL repeat 169 196 3.1E-10 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Gene3D G3DSA:2.120.10.30 149 440 4.7E-86 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Gene3D G3DSA:2.120.10.30 715 962 3.6E-71 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 SUPERFAMILY SSF49265 36 148 8.11E-8 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Gene3D G3DSA:2.120.10.30 624 714 7.8E-6 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 PANTHER PTHR24103 153 438 7.8E-76 T 23-04-2016 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Gene3D G3DSA:2.60.40.10 463 548 1.1E-13 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 Gene3D G3DSA:2.60.40.10 42 148 5.4E-11 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 SMART SM00060 40 140 0.1 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 SMART SM00060 460 538 4.9 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 SUPERFAMILY SSF101898 164 441 3.66E-55 T 23-04-2016 NIDE_RS20395 ee9b3cfa637792dbc0b2a18b9c0037d0 989 SUPERFAMILY SSF101898 684 960 1.2E-46 T 23-04-2016 NIDE_RS05320 a0326e772d96767d0d44dcd71477f452 321 Gene3D G3DSA:2.40.100.10 240 308 1.4E-7 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS05320 a0326e772d96767d0d44dcd71477f452 321 SUPERFAMILY SSF50891 186 300 2.54E-9 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS05320 a0326e772d96767d0d44dcd71477f452 321 PANTHER PTHR18866:SF74 148 283 2.4E-30 T 23-04-2016 NIDE_RS05320 a0326e772d96767d0d44dcd71477f452 321 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 7 311 3.4E-86 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B NIDE_RS05320 a0326e772d96767d0d44dcd71477f452 321 SMART SM00797 29 311 8.4E-123 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B NIDE_RS05320 a0326e772d96767d0d44dcd71477f452 321 Pfam PF02626 Allophanate hydrolase subunit 2 30 294 3.3E-87 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B NIDE_RS05320 a0326e772d96767d0d44dcd71477f452 321 PANTHER PTHR18866 148 283 2.4E-30 T 23-04-2016 NIDE_RS08715 d970534670ecdd818325ac421ba6cdd0 195 Pfam PF04542 Sigma-70 region 2 26 83 2.7E-8 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS08715 d970534670ecdd818325ac421ba6cdd0 195 PANTHER PTHR30173 14 170 1.2E-18 T 23-04-2016 NIDE_RS08715 d970534670ecdd818325ac421ba6cdd0 195 Gene3D G3DSA:1.10.1740.10 13 106 1.0E-11 T 23-04-2016 NIDE_RS08715 d970534670ecdd818325ac421ba6cdd0 195 PANTHER PTHR30173:SF9 14 170 1.2E-18 T 23-04-2016 NIDE_RS08715 d970534670ecdd818325ac421ba6cdd0 195 SUPERFAMILY SSF88659 104 169 1.33E-9 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS08715 d970534670ecdd818325ac421ba6cdd0 195 SUPERFAMILY SSF88946 13 102 1.1E-10 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS08715 d970534670ecdd818325ac421ba6cdd0 195 Gene3D G3DSA:1.10.10.10 107 170 1.6E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS08715 d970534670ecdd818325ac421ba6cdd0 195 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 167 2.0E-18 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS08715 d970534670ecdd818325ac421ba6cdd0 195 Pfam PF08281 Sigma-70, region 4 112 164 1.4E-6 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS16495 7d319fece28cb55c2647ae6a2cd4f932 225 Gene3D G3DSA:3.10.50.40 110 222 1.9E-44 T 23-04-2016 NIDE_RS16495 7d319fece28cb55c2647ae6a2cd4f932 225 PANTHER PTHR10516 95 225 1.1E-47 T 23-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type NIDE_RS16495 7d319fece28cb55c2647ae6a2cd4f932 225 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 133 220 5.9E-27 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 NIDE_RS16495 7d319fece28cb55c2647ae6a2cd4f932 225 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 21 120 3.3E-10 T 23-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 NIDE_RS16495 7d319fece28cb55c2647ae6a2cd4f932 225 Gene3D G3DSA:1.10.287.460 23 109 8.1E-8 T 23-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 NIDE_RS16495 7d319fece28cb55c2647ae6a2cd4f932 225 SUPERFAMILY SSF54534 67 223 1.73E-47 T 23-04-2016 NIDE_RS14295 e6ef6eed71e847e721e43a211118565d 282 SMART SM00849 47 256 5.6E-18 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS14295 e6ef6eed71e847e721e43a211118565d 282 SUPERFAMILY SSF56281 2 268 3.14E-43 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS14295 e6ef6eed71e847e721e43a211118565d 282 PANTHER PTHR23200 1 281 3.2E-71 T 23-04-2016 NIDE_RS14295 e6ef6eed71e847e721e43a211118565d 282 Gene3D G3DSA:3.60.15.10 1 271 7.1E-49 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS14295 e6ef6eed71e847e721e43a211118565d 282 Pfam PF00753 Metallo-beta-lactamase superfamily 46 256 2.0E-22 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS14295 e6ef6eed71e847e721e43a211118565d 282 PANTHER PTHR23200:SF41 1 281 3.2E-71 T 23-04-2016 NIDE_RS11550 1d1f8f1310488f1fa71e84fba61bcdff 477 ProSitePatterns PS01288 Uncharacterized protein family UPF0027 signature. 44 73 - T 23-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 NIDE_RS11550 1d1f8f1310488f1fa71e84fba61bcdff 477 SUPERFAMILY SSF103365 3 477 2.35E-161 T 23-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 NIDE_RS11550 1d1f8f1310488f1fa71e84fba61bcdff 477 PANTHER PTHR11118:SF1 5 477 1.6E-244 T 23-04-2016 NIDE_RS11550 1d1f8f1310488f1fa71e84fba61bcdff 477 PANTHER PTHR11118 5 477 1.6E-244 T 23-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 NIDE_RS11550 1d1f8f1310488f1fa71e84fba61bcdff 477 Pfam PF01139 tRNA-splicing ligase RtcB 44 477 8.8E-158 T 23-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 Gene3D G3DSA:3.40.50.300 269 355 5.7E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 Gene3D G3DSA:3.40.50.300 15 121 5.7E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 15 467 2.0E-194 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 SMART SM01086 359 453 1.6E-19 T 23-04-2016 IPR019489 Clp ATPase, C-terminal NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 SMART SM00382 60 356 6.6E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 Pfam PF07724 AAA domain (Cdc48 subfamily) 223 353 2.5E-40 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 PANTHER PTHR11262 242 467 4.0E-200 T 23-04-2016 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 PANTHER PTHR11262 2 116 4.0E-200 T 23-04-2016 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 64 134 7.9E-7 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 12 467 42.048 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 Gene3D G3DSA:1.10.8.10 237 267 1.1E-26 T 23-04-2016 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 Gene3D G3DSA:1.10.8.10 122 200 1.1E-26 T 23-04-2016 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 SUPERFAMILY SSF52540 15 465 3.16E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 PANTHER PTHR11262:SF3 242 467 4.0E-200 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 PANTHER PTHR11262:SF3 2 116 4.0E-200 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 Gene3D G3DSA:1.10.8.60 358 467 1.5E-34 T 23-04-2016 NIDE_RS01370 97aa05686dab09ae4c4b12ea6c2af163 467 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 359 430 1.4E-5 T 23-04-2016 IPR019489 Clp ATPase, C-terminal NIDE_RS09865 f760c2fe08231562ee81fd7ceb3ed13e 81 SUPERFAMILY SSF160582 5 70 2.09E-26 T 23-04-2016 NIDE_RS09865 f760c2fe08231562ee81fd7ceb3ed13e 81 SMART SM00923 3 53 4.3E-20 T 23-04-2016 IPR005153 MbtH-like protein NIDE_RS09865 f760c2fe08231562ee81fd7ceb3ed13e 81 Gene3D G3DSA:3.90.820.10 11 70 7.5E-30 T 23-04-2016 NIDE_RS09865 f760c2fe08231562ee81fd7ceb3ed13e 81 PANTHER PTHR38444:SF1 1 73 7.0E-26 T 23-04-2016 NIDE_RS09865 f760c2fe08231562ee81fd7ceb3ed13e 81 Pfam PF03621 MbtH-like protein 4 53 7.9E-21 T 23-04-2016 IPR005153 MbtH-like protein NIDE_RS09865 f760c2fe08231562ee81fd7ceb3ed13e 81 PANTHER PTHR38444 1 73 7.0E-26 T 23-04-2016 NIDE_RS04490 c1d0d009273e5053e35e16e11a123d6d 309 Pfam PF05175 Methyltransferase small domain 123 211 1.8E-14 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 NIDE_RS04490 c1d0d009273e5053e35e16e11a123d6d 309 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 23 297 4.5E-72 T 23-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 NIDE_RS04490 c1d0d009273e5053e35e16e11a123d6d 309 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 201 207 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NIDE_RS04490 c1d0d009273e5053e35e16e11a123d6d 309 Gene3D G3DSA:1.10.8.10 16 99 1.6E-22 T 23-04-2016 NIDE_RS04490 c1d0d009273e5053e35e16e11a123d6d 309 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 38 294 5.9E-77 T 23-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 NIDE_RS04490 c1d0d009273e5053e35e16e11a123d6d 309 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 16 298 39.582 T 23-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 NIDE_RS04490 c1d0d009273e5053e35e16e11a123d6d 309 PANTHER PTHR18895 20 302 1.2E-85 T 23-04-2016 NIDE_RS04490 c1d0d009273e5053e35e16e11a123d6d 309 SUPERFAMILY SSF53335 18 295 2.56E-55 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS04490 c1d0d009273e5053e35e16e11a123d6d 309 PANTHER PTHR18895:SF64 20 302 1.2E-85 T 23-04-2016 NIDE_RS04490 c1d0d009273e5053e35e16e11a123d6d 309 Gene3D G3DSA:3.40.50.150 102 297 2.2E-61 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 8.7E-6 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 8.7E-6 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.6E-47 T 23-04-2016 NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 360 4.4E-144 T 23-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 363 1.3E-16 T 23-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 Gene3D G3DSA:3.40.50.300 15 166 3.9E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 PANTHER PTHR11669:SF0 1 360 1.3E-171 T 23-04-2016 NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 Gene3D G3DSA:1.10.8.60 167 242 4.0E-30 T 23-04-2016 NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 SUPERFAMILY SSF52540 29 222 3.23E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 Gene3D G3DSA:1.20.272.10 243 362 3.5E-15 T 23-04-2016 NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 SUPERFAMILY SSF48019 244 363 1.19E-17 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 SMART SM00382 37 179 9.2E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS01285 ffa6e947dd64c008c5ef5bb538eab57c 625 PANTHER PTHR11669 1 360 1.3E-171 T 23-04-2016 NIDE_RS01620 2a290b4798984d34eea81bd23179fa8b 233 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 55 224 3.3E-61 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 NIDE_RS01620 2a290b4798984d34eea81bd23179fa8b 233 SUPERFAMILY SSF75445 134 211 1.29E-20 T 23-04-2016 NIDE_RS01620 2a290b4798984d34eea81bd23179fa8b 233 SMART SM01134 5 153 0.0047 T 23-04-2016 NIDE_RS01620 2a290b4798984d34eea81bd23179fa8b 233 PANTHER PTHR11934 7 233 2.4E-91 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 NIDE_RS01620 2a290b4798984d34eea81bd23179fa8b 233 Gene3D G3DSA:3.40.50.1360 9 146 1.7E-57 T 23-04-2016 NIDE_RS01620 2a290b4798984d34eea81bd23179fa8b 233 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 7 228 33.286 T 23-04-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 NIDE_RS01620 2a290b4798984d34eea81bd23179fa8b 233 SUPERFAMILY SSF100950 8 153 3.14E-46 T 23-04-2016 NIDE_RS01620 2a290b4798984d34eea81bd23179fa8b 233 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 11 225 7.0E-77 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 NIDE_RS01620 2a290b4798984d34eea81bd23179fa8b 233 Gene3D G3DSA:3.30.70.260 147 208 8.8E-24 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 Gene3D G3DSA:3.50.30.30 166 282 1.5E-7 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 PANTHER PTHR12147:SF16 4 234 1.1E-46 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 PANTHER PTHR12147:SF16 293 529 1.1E-46 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 SUPERFAMILY SSF52025 166 284 9.16E-11 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 PANTHER PTHR12147 4 234 1.1E-46 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 PANTHER PTHR12147 293 529 1.1E-46 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 SUPERFAMILY SSF53187 313 530 3.87E-57 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 SUPERFAMILY SSF53187 61 109 3.87E-57 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 Gene3D G3DSA:3.40.630.10 314 530 1.7E-54 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 Gene3D G3DSA:3.40.630.10 60 115 1.7E-54 T 23-04-2016 NIDE_RS14605 da980a17ea4c73e0f23eb06e51060b87 530 Pfam PF04389 Peptidase family M28 329 521 1.1E-36 T 23-04-2016 IPR007484 Peptidase M28 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 Gene3D G3DSA:2.40.50.140 557 663 6.6E-36 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 7 513 1.5E-147 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 PANTHER PTHR11946 2 619 4.4E-258 T 23-04-2016 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 Gene3D G3DSA:2.170.220.10 119 228 9.0E-39 T 23-04-2016 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 SUPERFAMILY SSF50249 558 662 8.08E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 PANTHER PTHR11946:SF1 2 619 4.4E-258 T 23-04-2016 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 Gene3D G3DSA:1.10.730.10 339 512 5.2E-41 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 PRINTS PR01041 Methionyl-tRNA synthetase signature 227 238 2.3E-29 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 PRINTS PR01041 Methionyl-tRNA synthetase signature 256 271 2.3E-29 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 PRINTS PR01041 Methionyl-tRNA synthetase signature 348 359 2.3E-29 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 PRINTS PR01041 Methionyl-tRNA synthetase signature 89 100 2.3E-29 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 PRINTS PR01041 Methionyl-tRNA synthetase signature 9 22 2.3E-29 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 PRINTS PR01041 Methionyl-tRNA synthetase signature 41 55 2.3E-29 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 SUPERFAMILY SSF52374 4 347 9.38E-109 T 23-04-2016 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 554 663 5.8E-41 T 23-04-2016 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 512 44.436 T 23-04-2016 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 Pfam PF09334 tRNA synthetases class I (M) 158 361 1.3E-54 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 Pfam PF09334 tRNA synthetases class I (M) 7 151 6.1E-48 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 SUPERFAMILY SSF47323 353 515 8.6E-34 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 Pfam PF01588 Putative tRNA binding domain 570 661 1.6E-26 T 23-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 Gene3D G3DSA:3.40.50.620 4 115 1.4E-76 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS13395 7cf9167802c1be7650a1a724dd1a78d7 663 Gene3D G3DSA:3.40.50.620 229 336 1.4E-76 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS04140 ebc09ee9cd7ce407a2a93c6da8beb5ff 371 SUPERFAMILY SSF81342 21 279 4.4E-70 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 NIDE_RS04140 ebc09ee9cd7ce407a2a93c6da8beb5ff 371 Gene3D G3DSA:1.20.810.10 21 364 1.7E-93 T 23-04-2016 IPR027387 Cytochrome b/b6-like domain NIDE_RS04140 ebc09ee9cd7ce407a2a93c6da8beb5ff 371 SUPERFAMILY SSF81648 238 363 9.16E-22 T 23-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 NIDE_RS04140 ebc09ee9cd7ce407a2a93c6da8beb5ff 371 Pfam PF00033 Cytochrome b/b6/petB 39 224 8.2E-48 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 NIDE_RS04140 ebc09ee9cd7ce407a2a93c6da8beb5ff 371 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 286 363 1.9E-9 T 23-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 NIDE_RS04140 ebc09ee9cd7ce407a2a93c6da8beb5ff 371 PANTHER PTHR19271 15 365 2.5E-89 T 23-04-2016 NIDE_RS12130 54b736a82f97418f560091b903eae08e 113 PANTHER PTHR20863:SF5 5 88 1.2E-14 T 23-04-2016 NIDE_RS12130 54b736a82f97418f560091b903eae08e 113 Pfam PF00550 Phosphopantetheine attachment site 9 76 9.1E-15 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS12130 54b736a82f97418f560091b903eae08e 113 Hamap MF_01217 Acyl carrier protein [acpP]. 6 80 13.935 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 NIDE_RS12130 54b736a82f97418f560091b903eae08e 113 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 38 77 2.0E-5 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 NIDE_RS12130 54b736a82f97418f560091b903eae08e 113 PANTHER PTHR20863 5 88 1.2E-14 T 23-04-2016 NIDE_RS12130 54b736a82f97418f560091b903eae08e 113 Gene3D G3DSA:1.10.1200.10 4 98 5.9E-21 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS12130 54b736a82f97418f560091b903eae08e 113 SUPERFAMILY SSF47336 4 94 1.7E-20 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Gene3D G3DSA:3.30.930.10 240 530 9.5E-113 T 23-04-2016 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 2.4E-52 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 2.4E-52 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 2.4E-52 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 2.4E-52 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 2.4E-52 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 65 634 35.014 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Pfam PF03129 Anticodon binding domain 541 629 3.5E-21 T 23-04-2016 IPR004154 Anticodon-binding NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 SUPERFAMILY SSF81271 1 61 2.62E-10 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Gene3D G3DSA:3.30.54.20 131 185 1.2E-21 T 23-04-2016 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 SUPERFAMILY SSF52954 529 633 3.02E-32 T 23-04-2016 IPR004154 Anticodon-binding NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 SUPERFAMILY SSF55186 63 238 1.57E-63 T 23-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Pfam PF02824 TGS domain 1 57 8.6E-7 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 PANTHER PTHR11451 1 629 7.9E-301 T 23-04-2016 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 SMART SM00863 168 217 6.0E-25 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Gene3D G3DSA:3.30.980.10 65 128 2.2E-38 T 23-04-2016 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Gene3D G3DSA:3.30.980.10 186 222 2.2E-38 T 23-04-2016 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 168 217 1.2E-15 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 PANTHER PTHR11451:SF5 1 629 7.9E-301 T 23-04-2016 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 324 529 1.1E-35 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Gene3D G3DSA:3.40.50.800 531 632 8.3E-35 T 23-04-2016 IPR004154 Anticodon-binding NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 SUPERFAMILY SSF55681 241 526 1.43E-94 T 23-04-2016 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 71 631 3.7E-222 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 NIDE_RS01855 ad70345a1870c45f4f387bc6a32cf402 646 Gene3D G3DSA:3.10.20.30 1 63 3.3E-15 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS04085 e13cbaf9f1fbe9dad010c81079307718 656 Pfam PF13727 CoA-binding domain 83 234 2.2E-14 T 23-04-2016 NIDE_RS04085 e13cbaf9f1fbe9dad010c81079307718 656 Gene3D G3DSA:3.40.50.720 288 465 8.6E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04085 e13cbaf9f1fbe9dad010c81079307718 656 SUPERFAMILY SSF51735 287 548 4.44E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04085 e13cbaf9f1fbe9dad010c81079307718 656 Gene3D G3DSA:3.90.25.10 466 546 9.4E-7 T 23-04-2016 NIDE_RS04085 e13cbaf9f1fbe9dad010c81079307718 656 PANTHER PTHR10366:SF256 288 552 4.8E-102 T 23-04-2016 NIDE_RS04085 e13cbaf9f1fbe9dad010c81079307718 656 Gene3D G3DSA:3.40.50.720 142 225 3.5E-14 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04085 e13cbaf9f1fbe9dad010c81079307718 656 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 287 454 0.0049 T 23-04-2016 NIDE_RS04085 e13cbaf9f1fbe9dad010c81079307718 656 Pfam PF02719 Polysaccharide biosynthesis protein 289 570 2.6E-107 T 23-04-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain NIDE_RS04085 e13cbaf9f1fbe9dad010c81079307718 656 PANTHER PTHR10366 288 552 4.8E-102 T 23-04-2016 NIDE_RS04085 e13cbaf9f1fbe9dad010c81079307718 656 SUPERFAMILY SSF51735 145 276 1.5E-18 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 94 284 3.8E-48 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 PANTHER PTHR30081 3 294 1.9E-69 T 23-04-2016 NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 10 298 26.417 T 23-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 PRINTS PR01755 Bacterial translocase SecF protein signature 235 250 2.4E-27 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 PRINTS PR01755 Bacterial translocase SecF protein signature 40 55 2.4E-27 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 PRINTS PR01755 Bacterial translocase SecF protein signature 155 169 2.4E-27 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 PRINTS PR01755 Bacterial translocase SecF protein signature 203 221 2.4E-27 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 Gene3D G3DSA:1.20.1640.10 126 294 2.1E-28 T 23-04-2016 NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 43 287 7.0E-73 T 23-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 SUPERFAMILY SSF82866 102 295 1.7E-37 T 23-04-2016 NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 Pfam PF02355 Protein export membrane protein 120 294 1.1E-59 T 23-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial NIDE_RS15010 cf8fa173e35a9e093d5fc77f09cdaf73 305 Pfam PF07549 SecD/SecF GG Motif 43 61 6.9E-6 T 23-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site NIDE_RS03675 06ab907d4b0ad508fbf2e0c0ae8509e4 217 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 50 186 2.0E-47 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS03675 06ab907d4b0ad508fbf2e0c0ae8509e4 217 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 62 77 1.1E-16 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS03675 06ab907d4b0ad508fbf2e0c0ae8509e4 217 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 150 162 1.1E-16 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS03675 06ab907d4b0ad508fbf2e0c0ae8509e4 217 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 100 1.1E-16 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS03675 06ab907d4b0ad508fbf2e0c0ae8509e4 217 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 163 178 1.1E-16 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS03675 06ab907d4b0ad508fbf2e0c0ae8509e4 217 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 83 100 - T 23-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 NIDE_RS03675 06ab907d4b0ad508fbf2e0c0ae8509e4 217 PANTHER PTHR11071 50 181 1.6E-48 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 NIDE_RS03675 06ab907d4b0ad508fbf2e0c0ae8509e4 217 SUPERFAMILY SSF50891 47 186 1.4E-48 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS03675 06ab907d4b0ad508fbf2e0c0ae8509e4 217 Gene3D G3DSA:2.40.100.10 40 185 3.1E-52 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS00170 c66abd0157c3b6c68d2f26e4afd84fdf 168 PANTHER PTHR33452 4 166 2.3E-62 T 23-04-2016 NIDE_RS00170 c66abd0157c3b6c68d2f26e4afd84fdf 168 PANTHER PTHR33452:SF3 4 166 2.3E-62 T 23-04-2016 NIDE_RS00170 c66abd0157c3b6c68d2f26e4afd84fdf 168 Pfam PF07681 DoxX 14 98 1.4E-19 T 23-04-2016 IPR032808 DoxX family NIDE_RS14765 9938c9a18664b43fbdaa21dd64844918 87 Gene3D G3DSA:1.10.10.10 12 35 0.001 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS06620 4acb92e5a3012a58eede48e18dbb4519 156 SUPERFAMILY SSF53098 1 140 1.39E-55 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS06620 4acb92e5a3012a58eede48e18dbb4519 156 Pfam PF00075 RNase H 3 138 1.4E-47 T 23-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 NIDE_RS06620 4acb92e5a3012a58eede48e18dbb4519 156 PANTHER PTHR10642 1 143 5.2E-56 T 23-04-2016 NIDE_RS06620 4acb92e5a3012a58eede48e18dbb4519 156 Gene3D G3DSA:3.30.420.10 2 141 1.8E-57 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS06620 4acb92e5a3012a58eede48e18dbb4519 156 Hamap MF_00042 Ribonuclease H [rnhA]. 1 147 33.299 T 23-04-2016 IPR022892 Ribonuclease H GO:0004523 NIDE_RS01155 99dd6cfd249823ce9096ff256d2f98e6 258 PANTHER PTHR11922:SF18 31 244 2.8E-54 T 23-04-2016 NIDE_RS01155 99dd6cfd249823ce9096ff256d2f98e6 258 SUPERFAMILY SSF52317 24 243 2.5E-42 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS01155 99dd6cfd249823ce9096ff256d2f98e6 258 Pfam PF07722 Peptidase C26 3 221 1.3E-63 T 23-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 NIDE_RS01155 99dd6cfd249823ce9096ff256d2f98e6 258 Gene3D G3DSA:3.40.50.880 1 243 9.3E-53 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS01155 99dd6cfd249823ce9096ff256d2f98e6 258 PANTHER PTHR11922 31 244 2.8E-54 T 23-04-2016 NIDE_RS18105 c82b9887d9e87bff5cb2deb648f4ebe9 310 PIRSF PIRSF036979 16 304 5.3E-43 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 NIDE_RS18105 c82b9887d9e87bff5cb2deb648f4ebe9 310 TIGRFAM TIGR01230 agmatinase: agmatinase 22 301 8.2E-57 T 23-04-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 NIDE_RS18105 c82b9887d9e87bff5cb2deb648f4ebe9 310 PANTHER PTHR11358 24 300 4.6E-76 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 NIDE_RS18105 c82b9887d9e87bff5cb2deb648f4ebe9 310 PANTHER PTHR11358:SF34 24 300 4.6E-76 T 23-04-2016 NIDE_RS18105 c82b9887d9e87bff5cb2deb648f4ebe9 310 Gene3D G3DSA:3.40.800.10 23 303 1.1E-58 T 23-04-2016 IPR023696 Ureohydrolase domain NIDE_RS18105 c82b9887d9e87bff5cb2deb648f4ebe9 310 SUPERFAMILY SSF52768 27 307 4.68E-58 T 23-04-2016 NIDE_RS18105 c82b9887d9e87bff5cb2deb648f4ebe9 310 Pfam PF00491 Arginase family 28 298 2.1E-55 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 NIDE_RS18105 c82b9887d9e87bff5cb2deb648f4ebe9 310 PRINTS PR00116 Arginase signature 115 130 7.0E-11 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 NIDE_RS18105 c82b9887d9e87bff5cb2deb648f4ebe9 310 PRINTS PR00116 Arginase signature 228 257 7.0E-11 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 NIDE_RS02070 7ada20b2cbd62c6b4596f7f3bcad0acb 284 Gene3D G3DSA:3.40.50.720 111 281 4.1E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02070 7ada20b2cbd62c6b4596f7f3bcad0acb 284 Gene3D G3DSA:3.40.192.10 3 110 4.4E-42 T 23-04-2016 NIDE_RS02070 7ada20b2cbd62c6b4596f7f3bcad0acb 284 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 9 282 1.1E-71 T 23-04-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS02070 7ada20b2cbd62c6b4596f7f3bcad0acb 284 PANTHER PTHR21089 1 282 9.1E-97 T 23-04-2016 NIDE_RS02070 7ada20b2cbd62c6b4596f7f3bcad0acb 284 SUPERFAMILY SSF53223 3 105 4.32E-33 T 23-04-2016 NIDE_RS02070 7ada20b2cbd62c6b4596f7f3bcad0acb 284 SUPERFAMILY SSF51735 106 281 2.99E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02070 7ada20b2cbd62c6b4596f7f3bcad0acb 284 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 12 93 5.7E-29 T 23-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS02070 7ada20b2cbd62c6b4596f7f3bcad0acb 284 PANTHER PTHR21089:SF1 1 282 9.1E-97 T 23-04-2016 NIDE_RS02070 7ada20b2cbd62c6b4596f7f3bcad0acb 284 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 7 281 32.816 T 23-04-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS05085 d61515adef90ee48f725c45b343076db 104 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 8.4E-32 T 23-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05085 d61515adef90ee48f725c45b343076db 104 PANTHER PTHR21349 1 102 7.0E-35 T 23-04-2016 NIDE_RS05085 d61515adef90ee48f725c45b343076db 104 SUPERFAMILY SSF141091 1 101 6.02E-35 T 23-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 NIDE_RS05085 d61515adef90ee48f725c45b343076db 104 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 2.2E-38 T 23-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 NIDE_RS05085 d61515adef90ee48f725c45b343076db 104 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 25.532 T 23-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05085 d61515adef90ee48f725c45b343076db 104 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 23-04-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 PRINTS PR00127 Clp protease catalytic subunit P signature 58 78 1.8E-55 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 PRINTS PR00127 Clp protease catalytic subunit P signature 110 129 1.8E-55 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 PRINTS PR00127 Clp protease catalytic subunit P signature 167 186 1.8E-55 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 PRINTS PR00127 Clp protease catalytic subunit P signature 89 106 1.8E-55 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 PRINTS PR00127 Clp protease catalytic subunit P signature 18 33 1.8E-55 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 SUPERFAMILY SSF52096 9 190 9.95E-76 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 2 192 45.37 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 PANTHER PTHR10381 1 198 1.2E-139 T 23-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 89 100 - T 23-04-2016 IPR018215 ClpP, Ser active site NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 2 191 3.1E-106 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 Gene3D G3DSA:3.90.226.10 2 190 4.0E-91 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 Pfam PF00574 Clp protease 12 191 9.7E-90 T 23-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA NIDE_RS01200 237489c049c7a38187b8dedda0ccde57 211 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 111 124 - T 23-04-2016 IPR033135 ClpP, histidine active site NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 SUPERFAMILY SSF46894 139 209 5.1E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 SMART SM00448 2 115 4.1E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 SMART SM00421 146 203 1.0E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 6.1E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 Pfam PF00072 Response regulator receiver domain 4 115 7.1E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 Gene3D G3DSA:1.10.10.10 120 210 1.3E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 SUPERFAMILY SSF52172 3 130 4.27E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 5.2E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 5.2E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 5.2E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 PANTHER PTHR26402 2 207 1.6E-58 T 23-04-2016 NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 Gene3D G3DSA:3.40.50.2300 3 119 8.2E-34 T 23-04-2016 NIDE_RS06885 321fdc1bdada9b1294ae8600ed053a05 214 PANTHER PTHR26402:SF458 2 207 1.6E-58 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Gene3D G3DSA:3.10.20.30 2 55 9.7E-6 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Gene3D G3DSA:2.40.40.20 735 892 2.5E-41 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 SUPERFAMILY SSF50692 737 892 1.38E-36 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Gene3D G3DSA:3.40.50.740 275 357 5.0E-23 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Gene3D G3DSA:2.20.25.90 228 271 4.3E-19 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Gene3D G3DSA:3.40.50.740 584 731 2.5E-56 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Gene3D G3DSA:3.40.50.740 530 551 2.5E-56 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 PANTHER PTHR11615:SF112 216 497 5.1E-213 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 PANTHER PTHR11615:SF112 520 906 5.1E-213 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Gene3D G3DSA:3.40.228.10 358 529 7.5E-66 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 1 75 2.6E-19 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 PANTHER PTHR11615 216 497 5.1E-213 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 30 47 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 191 202 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 SUPERFAMILY SSF53706 217 783 7.59E-195 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 223 240 - T 23-04-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 PANTHER PTHR11615 520 906 5.1E-213 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 PANTHER PTHR11615 2 50 5.1E-213 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 SMART SM00926 218 272 2.7E-15 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 SUPERFAMILY SSF54292 1 98 7.66E-27 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Gene3D G3DSA:3.30.70.20 198 227 3.0E-4 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Pfam PF01568 Molydopterin dinucleotide binding domain 781 884 2.8E-24 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Pfam PF12838 4Fe-4S dicluster domain 140 205 2.1E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 PIRSF PIRSF036643 1 903 0.0 T 23-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 SUPERFAMILY SSF54862 74 213 2.63E-27 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Pfam PF00384 Molybdopterin oxidoreductase 275 697 2.0E-83 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 223 889 2.0E-249 T 23-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 219 270 1.1E-16 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 PANTHER PTHR11615:SF112 2 50 5.1E-213 T 23-04-2016 NIDE_RS08850 7fcee50c59e4c7744581256922d24cb8 908 Gene3D G3DSA:3.30.70.20 124 197 2.8E-13 T 23-04-2016 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 Pfam PF00815 Histidinol dehydrogenase 21 426 5.0E-166 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 5 426 40.429 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 Gene3D G3DSA:3.40.50.1980 29 238 9.9E-80 T 23-04-2016 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 SUPERFAMILY SSF53720 28 425 9.42E-78 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 PIRSF PIRSF000099 2 427 5.5E-162 T 23-04-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 PANTHER PTHR21256 1 427 6.6E-189 T 23-04-2016 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 425 5.9E-160 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 PRINTS PR00083 Histidinol dehydrogenase signature 135 161 6.0E-86 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 PRINTS PR00083 Histidinol dehydrogenase signature 199 224 6.0E-86 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 PRINTS PR00083 Histidinol dehydrogenase signature 169 195 6.0E-86 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 PRINTS PR00083 Histidinol dehydrogenase signature 360 378 6.0E-86 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 PRINTS PR00083 Histidinol dehydrogenase signature 228 249 6.0E-86 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 PRINTS PR00083 Histidinol dehydrogenase signature 319 344 6.0E-86 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 PRINTS PR00083 Histidinol dehydrogenase signature 250 269 6.0E-86 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS04505 86ea545a872561d4f8c88f6eb700e4d3 427 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 6.0E-86 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 NIDE_RS13170 5302d45a8bc034e07498dbacb3632e2f 354 Gene3D G3DSA:3.40.50.1110 99 229 1.2E-18 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS13170 5302d45a8bc034e07498dbacb3632e2f 354 Gene3D G3DSA:3.40.50.1110 266 346 1.2E-18 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS13170 5302d45a8bc034e07498dbacb3632e2f 354 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 102 335 1.5E-9 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS13170 5302d45a8bc034e07498dbacb3632e2f 354 SUPERFAMILY SSF52266 99 174 2.26E-22 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS13170 5302d45a8bc034e07498dbacb3632e2f 354 SUPERFAMILY SSF52266 276 346 2.26E-22 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS10815 2b98f16f593df18e4d38b8d557d8b756 259 PANTHER PTHR30329:SF4 1 258 2.2E-68 T 23-04-2016 NIDE_RS10815 2b98f16f593df18e4d38b8d557d8b756 259 SUPERFAMILY SSF103088 120 235 8.24E-30 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS10815 2b98f16f593df18e4d38b8d557d8b756 259 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 3 55 7.0E-23 T 23-04-2016 IPR025713 Motility protein B, N-terminal domain NIDE_RS10815 2b98f16f593df18e4d38b8d557d8b756 259 Gene3D G3DSA:3.30.1330.60 116 235 1.3E-29 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS10815 2b98f16f593df18e4d38b8d557d8b756 259 Pfam PF00691 OmpA family 130 229 9.3E-15 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS10815 2b98f16f593df18e4d38b8d557d8b756 259 PANTHER PTHR30329 1 258 2.2E-68 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SUPERFAMILY SSF56801 1486 2053 7.98E-156 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SUPERFAMILY SSF52777 1247 1492 9.45E-61 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:3.40.50.980 459 610 4.3E-51 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:3.40.50.980 1516 1674 8.0E-49 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1544 1953 5.6E-127 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 484 886 7.3E-131 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Pfam PF00501 AMP-binding enzyme 464 862 1.6E-98 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Pfam PF00501 AMP-binding enzyme 1524 1930 6.4E-89 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Pfam PF00550 Phosphopantetheine attachment site 2041 2105 1.0E-14 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Pfam PF00550 Phosphopantetheine attachment site 974 1035 3.3E-15 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SUPERFAMILY SSF47336 964 1036 7.72E-21 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SUPERFAMILY SSF56801 426 983 2.09E-160 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SUPERFAMILY SSF47336 2032 2106 5.1E-20 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SUPERFAMILY SSF52777 10 182 4.45E-23 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SMART SM00824 Thioesterase 2129 2335 0.009 T 23-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:3.40.50.980 611 772 1.1E-37 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:3.40.50.980 1675 1840 2.1E-37 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 PANTHER PTHR24095:SF137 12 2013 0.0 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SMART SM00823 Phosphopantetheine attachment site 971 1040 1.7E-5 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SMART SM00823 Phosphopantetheine attachment site 2040 2109 2.5E-6 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 ProSitePatterns PS00455 Putative AMP-binding domain signature. 602 613 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1665 1676 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Pfam PF13745 HxxPF-repeated domain 1380 1470 5.9E-35 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Pfam PF00975 Thioesterase domain 2127 2372 1.5E-24 T 23-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SUPERFAMILY SSF52777 1062 1239 2.0E-51 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 PANTHER PTHR24095 12 2013 0.0 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:1.10.1200.10 976 1039 2.3E-28 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:1.10.1200.10 2044 2110 9.0E-27 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:3.40.50.1820 2326 2378 2.3E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:3.40.50.1820 2116 2229 2.3E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Pfam PF13193 AMP-binding enzyme C-terminal domain 1938 2013 1.0E-8 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Pfam PF13193 AMP-binding enzyme C-terminal domain 870 944 9.8E-13 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Pfam PF00668 Condensation domain 1059 1358 1.4E-74 T 23-04-2016 IPR001242 Condensation domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Pfam PF00668 Condensation domain 11 304 4.8E-34 T 23-04-2016 IPR001242 Condensation domain NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SUPERFAMILY SSF53474 2107 2372 9.73E-40 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 SUPERFAMILY SSF52777 191 426 1.67E-23 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:3.30.300.30 1925 2043 8.7E-39 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:3.30.300.30 857 975 3.4E-43 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2064 2079 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:2.30.38.10 773 852 1.1E-28 T 23-04-2016 NIDE_RS09895 e5b86706f227feafa06c6578550c03e5 2392 Gene3D G3DSA:2.30.38.10 1841 1919 2.4E-23 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 SUPERFAMILY SSF53706 32 737 3.93E-84 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 3 23 3.5E-5 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 Gene3D G3DSA:2.20.25.90 73 132 1.3E-7 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 Gene3D G3DSA:3.40.228.10 287 394 6.3E-45 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 Gene3D G3DSA:3.40.228.10 484 560 6.3E-45 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 Gene3D G3DSA:2.40.40.20 898 1108 1.7E-13 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 Pfam PF00384 Molybdopterin oxidoreductase 264 742 1.1E-25 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 Gene3D G3DSA:3.40.50.740 561 758 1.2E-23 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 Gene3D G3DSA:3.40.50.740 133 239 1.2E-23 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615:SF167 487 854 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615:SF167 11 139 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615:SF167 163 246 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615:SF167 295 377 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615:SF167 897 936 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615:SF167 954 970 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615 487 854 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615 11 139 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615 163 246 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615 295 377 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615 897 936 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 PANTHER PTHR11615 954 970 2.3E-26 T 23-04-2016 NIDE_RS14790 855939ddd04f681d78bd27e27ba58bb9 1146 SUPERFAMILY SSF50692 900 974 9.49E-8 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain NIDE_RS13410 c71c18ccafdf60fd924017341bb025a1 313 PANTHER PTHR11562 10 296 6.7E-84 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 NIDE_RS13410 c71c18ccafdf60fd924017341bb025a1 313 SUPERFAMILY SSF161111 8 205 3.53E-50 T 23-04-2016 NIDE_RS13410 c71c18ccafdf60fd924017341bb025a1 313 SUPERFAMILY SSF160240 211 284 3.66E-10 T 23-04-2016 NIDE_RS13410 c71c18ccafdf60fd924017341bb025a1 313 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 286 3.6E-78 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 NIDE_RS13410 c71c18ccafdf60fd924017341bb025a1 313 Gene3D G3DSA:3.30.70.1350 215 283 4.4E-5 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain NIDE_RS13410 c71c18ccafdf60fd924017341bb025a1 313 Gene3D G3DSA:1.20.1510.10 11 203 2.5E-50 T 23-04-2016 IPR027469 Cation efflux protein transmembrane domain NIDE_RS13410 c71c18ccafdf60fd924017341bb025a1 313 Pfam PF01545 Cation efflux family 13 204 2.5E-38 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 NIDE_RS17060 1c4b2a29ccad74f9ecd9ccc56b3a2d53 76 Gene3D G3DSA:1.20.20.10 8 72 8.4E-23 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 NIDE_RS17060 1c4b2a29ccad74f9ecd9ccc56b3a2d53 76 PRINTS PR00124 ATP synthase C subunit signature 47 72 1.2E-24 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 NIDE_RS17060 1c4b2a29ccad74f9ecd9ccc56b3a2d53 76 PRINTS PR00124 ATP synthase C subunit signature 9 28 1.2E-24 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 NIDE_RS17060 1c4b2a29ccad74f9ecd9ccc56b3a2d53 76 PRINTS PR00124 ATP synthase C subunit signature 30 45 1.2E-24 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 NIDE_RS17060 1c4b2a29ccad74f9ecd9ccc56b3a2d53 76 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 72 3.4E-18 T 23-04-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 NIDE_RS17060 1c4b2a29ccad74f9ecd9ccc56b3a2d53 76 SUPERFAMILY SSF81333 5 72 2.88E-18 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 NIDE_RS17060 1c4b2a29ccad74f9ecd9ccc56b3a2d53 76 ProSitePatterns PS00605 ATP synthase c subunit signature. 37 58 - T 23-04-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site NIDE_RS17060 1c4b2a29ccad74f9ecd9ccc56b3a2d53 76 Hamap MF_01396 ATP synthase subunit c [atpH]. 7 74 15.284 T 23-04-2016 NIDE_RS17060 1c4b2a29ccad74f9ecd9ccc56b3a2d53 76 Pfam PF00137 ATP synthase subunit C 10 71 1.1E-13 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 NIDE_RS17060 1c4b2a29ccad74f9ecd9ccc56b3a2d53 76 PANTHER PTHR10031 4 72 2.8E-20 T 23-04-2016 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 SUPERFAMILY SSF52172 13 127 1.76E-11 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 SUPERFAMILY SSF46894 156 229 4.76E-22 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 Pfam PF00196 Bacterial regulatory proteins, luxR family 168 221 3.8E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 SMART SM00421 166 223 1.3E-23 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 PANTHER PTHR26402:SF151 11 229 3.7E-31 T 23-04-2016 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 PANTHER PTHR26402 11 229 3.7E-31 T 23-04-2016 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 Gene3D G3DSA:1.10.10.10 170 229 3.3E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 Pfam PF00072 Response regulator receiver domain 13 123 3.1E-9 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 ProSitePatterns PS00622 LuxR-type HTH domain signature. 183 210 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 199 1.5E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 199 211 1.5E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 183 1.5E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 Gene3D G3DSA:3.40.50.2300 13 169 4.1E-12 T 23-04-2016 NIDE_RS20735 162a932f651a99d0d051b9a5a503f4e6 235 SMART SM00448 11 123 0.0033 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 SMART SM00283 361 622 3.3E-57 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 SUPERFAMILY SSF58104 367 623 7.46E-63 T 23-04-2016 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 SUPERFAMILY SSF58104 257 291 7.46E-63 T 23-04-2016 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 Gene3D G3DSA:1.10.287.950 376 587 1.2E-48 T 23-04-2016 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 417 621 2.0E-44 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 PANTHER PTHR32089 329 624 5.9E-92 T 23-04-2016 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 PANTHER PTHR32089 204 271 5.9E-92 T 23-04-2016 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 Pfam PF00672 HAMP domain 218 284 2.6E-14 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 SMART SM00304 295 346 37.0 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 SMART SM00304 237 289 5.1E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS20710 67d396d7d4593aacb3824cbf279a6f9e 624 Pfam PF12729 Four helix bundle sensory module for signal transduction 12 207 1.2E-17 T 23-04-2016 IPR024478 4HB MCP domain NIDE_RS04590 3645174713faec0cffaa786928445b50 172 Pfam PF10369 Small subunit of acetolactate synthase 84 156 1.0E-28 T 23-04-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS04590 3645174713faec0cffaa786928445b50 172 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 2 75 9.0E-30 T 23-04-2016 NIDE_RS04590 3645174713faec0cffaa786928445b50 172 SUPERFAMILY SSF55021 1 76 1.78E-23 T 23-04-2016 NIDE_RS04590 3645174713faec0cffaa786928445b50 172 Gene3D G3DSA:3.30.70.260 1 78 3.1E-35 T 23-04-2016 NIDE_RS04590 3645174713faec0cffaa786928445b50 172 PANTHER PTHR30239 1 159 4.1E-88 T 23-04-2016 NIDE_RS04590 3645174713faec0cffaa786928445b50 172 SUPERFAMILY SSF55021 79 157 8.89E-27 T 23-04-2016 NIDE_RS04590 3645174713faec0cffaa786928445b50 172 Pfam PF13710 ACT domain 14 73 2.6E-16 T 23-04-2016 NIDE_RS04590 3645174713faec0cffaa786928445b50 172 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 157 8.2E-61 T 23-04-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS04590 3645174713faec0cffaa786928445b50 172 Gene3D G3DSA:3.30.70.1150 84 158 6.9E-30 T 23-04-2016 NIDE_RS09440 45b44ad0cca73496b6bbd788b9049497 236 Pfam PF13759 Putative 2OG-Fe(II) oxygenase 104 213 9.2E-25 T 23-04-2016 IPR012668 Conserved hypothetical protein CHP02466 NIDE_RS09440 45b44ad0cca73496b6bbd788b9049497 236 TIGRFAM TIGR02466 TIGR02466: conserved hypothetical protein 12 215 6.4E-23 T 23-04-2016 IPR012668 Conserved hypothetical protein CHP02466 NIDE_RS09440 45b44ad0cca73496b6bbd788b9049497 236 Gene3D G3DSA:2.60.120.620 10 220 2.8E-44 T 23-04-2016 NIDE_RS09995 e5296dbc41c1b7f7f68f1c16bd1d1ab8 329 Pfam PF04773 FecR protein 121 212 7.0E-20 T 23-04-2016 IPR006860 FecR protein NIDE_RS09995 e5296dbc41c1b7f7f68f1c16bd1d1ab8 329 PANTHER PTHR30273:SF2 7 316 5.7E-61 T 23-04-2016 NIDE_RS09995 e5296dbc41c1b7f7f68f1c16bd1d1ab8 329 PANTHER PTHR30273 7 316 5.7E-61 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component NIDE_RS09995 e5296dbc41c1b7f7f68f1c16bd1d1ab8 329 Pfam PF16344 Domain of unknown function (DUF4974) 230 316 4.0E-9 T 23-04-2016 IPR032508 Protein FecR, C-terminal NIDE_RS09995 e5296dbc41c1b7f7f68f1c16bd1d1ab8 329 Pfam PF16220 Domain of unknown function (DUF4880) 15 55 1.9E-13 T 23-04-2016 IPR032623 FecR, N-terminal NIDE_RS09995 e5296dbc41c1b7f7f68f1c16bd1d1ab8 329 PIRSF PIRSF018266 4 329 1.9E-88 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 SUPERFAMILY SSF52413 316 437 7.19E-34 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 SMART SM00984 325 428 2.1E-41 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 Gene3D G3DSA:3.40.50.720 1 189 7.4E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 Gene3D G3DSA:1.20.5.100 198 227 2.8E-14 T 23-04-2016 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 325 427 3.7E-29 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 PANTHER PTHR11374:SF18 1 448 3.6E-155 T 23-04-2016 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 198 303 4.5E-35 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 SUPERFAMILY SSF48179 198 305 5.95E-19 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 PANTHER PTHR11374 1 448 3.6E-155 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 179 8.1E-54 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 PIRSF PIRSF500134 1 445 4.7E-125 T 23-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 424 1.7E-118 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 SUPERFAMILY SSF51735 1 188 8.25E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 Gene3D G3DSA:3.40.50.720 230 443 1.6E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13215 27c0cc220af1b05033094ac5ec1b802e 448 PIRSF PIRSF000124 1 443 1.7E-119 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 NIDE_RS13685 209ee3db2061d4c247b1d7bbaa43d0cd 259 Pfam PF08241 Methyltransferase domain 69 163 1.5E-21 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS13685 209ee3db2061d4c247b1d7bbaa43d0cd 259 Gene3D G3DSA:3.40.50.150 39 243 5.2E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13685 209ee3db2061d4c247b1d7bbaa43d0cd 259 PANTHER PTHR10108 30 188 1.1E-25 T 23-04-2016 NIDE_RS13685 209ee3db2061d4c247b1d7bbaa43d0cd 259 SUPERFAMILY SSF53335 4 259 3.01E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 SUPERFAMILY SSF56524 43 261 2.22E-70 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PRINTS PR00407 Eukaryotic molybdopterin domain signature 372 385 1.8E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PRINTS PR00407 Eukaryotic molybdopterin domain signature 314 326 1.8E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PRINTS PR00407 Eukaryotic molybdopterin domain signature 359 371 1.8E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PRINTS PR00407 Eukaryotic molybdopterin domain signature 196 212 1.8E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PRINTS PR00407 Eukaryotic molybdopterin domain signature 143 158 1.8E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PRINTS PR00407 Eukaryotic molybdopterin domain signature 229 242 1.8E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PRINTS PR00407 Eukaryotic molybdopterin domain signature 44 58 1.8E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PRINTS PR00407 Eukaryotic molybdopterin domain signature 276 288 1.8E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PRINTS PR00407 Eukaryotic molybdopterin domain signature 213 226 1.8E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PRINTS PR00407 Eukaryotic molybdopterin domain signature 64 80 1.8E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 PANTHER PTHR19372 50 391 2.1E-99 T 23-04-2016 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 277 390 6.4E-16 T 23-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 Gene3D G3DSA:3.90.420.10 43 262 1.7E-79 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 Gene3D G3DSA:2.60.40.650 278 391 3.5E-34 T 23-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 SUPERFAMILY SSF81296 278 391 8.4E-32 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS17705 0ee38cc83328185bedf153acfb12ae04 393 Pfam PF00174 Oxidoreductase molybdopterin binding domain 84 250 7.1E-58 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS08845 b44fd3c7f61b45da9e631f3d0c9c5dcb 498 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 423 434 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 NIDE_RS08845 b44fd3c7f61b45da9e631f3d0c9c5dcb 498 SMART SM00928 410 455 1.7E-22 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 NIDE_RS08845 b44fd3c7f61b45da9e631f3d0c9c5dcb 498 SUPERFAMILY SSF140490 407 496 1.24E-31 T 23-04-2016 NIDE_RS08845 b44fd3c7f61b45da9e631f3d0c9c5dcb 498 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 135 300 5.0E-44 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain NIDE_RS08845 b44fd3c7f61b45da9e631f3d0c9c5dcb 498 SUPERFAMILY SSF142984 325 404 4.84E-21 T 23-04-2016 NIDE_RS08845 b44fd3c7f61b45da9e631f3d0c9c5dcb 498 Pfam PF10531 SLBB domain 327 369 1.7E-7 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS08845 b44fd3c7f61b45da9e631f3d0c9c5dcb 498 PANTHER PTHR11780:SF0 85 497 3.3E-200 T 23-04-2016 NIDE_RS08845 b44fd3c7f61b45da9e631f3d0c9c5dcb 498 SUPERFAMILY SSF142019 85 321 2.48E-73 T 23-04-2016 NIDE_RS08845 b44fd3c7f61b45da9e631f3d0c9c5dcb 498 PANTHER PTHR11780 85 497 3.3E-200 T 23-04-2016 NIDE_RS08845 b44fd3c7f61b45da9e631f3d0c9c5dcb 498 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 412 494 7.8E-31 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 NIDE_RS18665 97a5af8de1326adb02126dc8ef0f2d82 367 Pfam PF16074 Type IV Pilus-assembly protein W 226 366 3.8E-6 T 23-04-2016 IPR032092 Type IV Pilus-assembly protein W GO:0043683 NIDE_RS18665 97a5af8de1326adb02126dc8ef0f2d82 367 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 1.5E-4 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS18665 97a5af8de1326adb02126dc8ef0f2d82 367 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 7 29 7.1E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS18665 97a5af8de1326adb02126dc8ef0f2d82 367 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 SUPERFAMILY SSF46689 597 688 3.0E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 Pfam PF00158 Sigma-54 interaction domain 386 552 4.9E-71 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 Gene3D G3DSA:3.40.50.300 383 558 1.4E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 410 423 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 Pfam PF13185 GAF domain 48 172 6.0E-10 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 Pfam PF13185 GAF domain 208 351 7.9E-16 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 PANTHER PTHR32071 346 692 1.9E-154 T 23-04-2016 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 Gene3D G3DSA:1.10.8.60 559 611 6.1E-24 T 23-04-2016 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 Pfam PF02954 Bacterial regulatory protein, Fis family 643 686 1.1E-5 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 SUPERFAMILY SSF52540 385 621 3.9E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 Gene3D G3DSA:3.30.450.40 12 184 3.9E-24 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 Gene3D G3DSA:3.30.450.40 186 366 1.1E-30 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 SMART SM00065 32 181 5.7E-13 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 SMART SM00065 209 360 1.1E-15 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 SMART SM00382 406 550 3.9E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 472 487 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 599 608 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 SUPERFAMILY SSF55781 190 366 1.64E-26 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 Gene3D G3DSA:1.10.10.60 612 688 5.9E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS00140 97a609dd8e7df7d49ddda04c6fa2b39e 693 SUPERFAMILY SSF55781 32 182 7.63E-22 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS18590 694b2a1b5bdd8bb2cedca5777f61cb34 564 Gene3D G3DSA:1.20.1560.10 27 334 4.4E-11 T 23-04-2016 NIDE_RS18590 694b2a1b5bdd8bb2cedca5777f61cb34 564 PANTHER PTHR24221 27 516 9.6E-42 T 23-04-2016 NIDE_RS18590 694b2a1b5bdd8bb2cedca5777f61cb34 564 SUPERFAMILY SSF52540 351 563 1.24E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18590 694b2a1b5bdd8bb2cedca5777f61cb34 564 Gene3D G3DSA:3.40.50.300 354 563 8.5E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18590 694b2a1b5bdd8bb2cedca5777f61cb34 564 Pfam PF00005 ABC transporter 371 516 1.3E-11 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS18590 694b2a1b5bdd8bb2cedca5777f61cb34 564 PANTHER PTHR24221:SF161 27 516 9.6E-42 T 23-04-2016 NIDE_RS18590 694b2a1b5bdd8bb2cedca5777f61cb34 564 SUPERFAMILY SSF90123 29 334 2.35E-19 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 472 2.5E-160 T 23-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 PIRSF PIRSF000130 1 487 5.3E-206 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 SMART SM01240 8 472 0.0 T 23-04-2016 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 9 453 2.2E-193 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 PANTHER PTHR11911 5 281 4.9E-238 T 23-04-2016 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 PANTHER PTHR11911 299 484 4.9E-238 T 23-04-2016 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 SUPERFAMILY SSF54631 82 204 1.06E-30 T 23-04-2016 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 SUPERFAMILY SSF51412 5 91 1.03E-124 T 23-04-2016 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 SUPERFAMILY SSF51412 216 476 1.03E-124 T 23-04-2016 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 294 306 - T 23-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 Pfam PF00571 CBS domain 149 203 1.5E-8 T 23-04-2016 IPR000644 CBS domain NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 Pfam PF00571 CBS domain 97 140 1.1E-11 T 23-04-2016 IPR000644 CBS domain NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 SMART SM00116 157 205 2.1E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 SMART SM00116 97 144 3.7E-11 T 23-04-2016 IPR000644 CBS domain NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 Gene3D G3DSA:3.20.20.70 3 484 2.3E-203 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 9 485 84.803 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 PANTHER PTHR11911:SF6 5 281 4.9E-238 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 NIDE_RS06595 8c0a312981f8851d773326b3f7da76cd 488 PANTHER PTHR11911:SF6 299 484 4.9E-238 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 NIDE_RS12150 0b4ba7243af37dc3e8c73219724843bf 315 Gene3D G3DSA:1.20.120.160 10 98 8.6E-11 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12150 0b4ba7243af37dc3e8c73219724843bf 315 SUPERFAMILY SSF47226 14 103 2.22E-10 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS14435 0a786af5ebce8159d9335eee7fe8bec9 253 PIRSF PIRSF004846 1 253 1.9E-61 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 NIDE_RS14435 0a786af5ebce8159d9335eee7fe8bec9 253 SUPERFAMILY SSF53850 23 252 1.66E-68 T 23-04-2016 NIDE_RS14435 0a786af5ebce8159d9335eee7fe8bec9 253 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 29 248 1.7E-63 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 NIDE_RS14435 0a786af5ebce8159d9335eee7fe8bec9 253 PANTHER PTHR30632 1 249 3.2E-52 T 23-04-2016 NIDE_RS14435 0a786af5ebce8159d9335eee7fe8bec9 253 PANTHER PTHR30632:SF0 1 249 3.2E-52 T 23-04-2016 NIDE_RS14435 0a786af5ebce8159d9335eee7fe8bec9 253 Gene3D G3DSA:3.40.190.10 24 95 9.1E-10 T 23-04-2016 NIDE_RS14435 0a786af5ebce8159d9335eee7fe8bec9 253 Gene3D G3DSA:3.40.190.10 103 211 7.6E-38 T 23-04-2016 NIDE_RS14435 0a786af5ebce8159d9335eee7fe8bec9 253 Gene3D G3DSA:3.40.190.10 213 252 2.4E-5 T 23-04-2016 NIDE_RS14435 0a786af5ebce8159d9335eee7fe8bec9 253 Pfam PF13531 Bacterial extracellular solute-binding protein 25 249 2.0E-56 T 23-04-2016 NIDE_RS01885 20a7caacdca53c9a3957ba45f7e7f99d 240 PANTHER PTHR23293:SF5 13 239 5.7E-78 T 23-04-2016 NIDE_RS01885 20a7caacdca53c9a3957ba45f7e7f99d 240 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 4 240 38.321 T 23-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 NIDE_RS01885 20a7caacdca53c9a3957ba45f7e7f99d 240 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 43 216 1.1E-45 T 23-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 NIDE_RS01885 20a7caacdca53c9a3957ba45f7e7f99d 240 PIRSF PIRSF000857 1 240 1.0E-86 T 23-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 NIDE_RS01885 20a7caacdca53c9a3957ba45f7e7f99d 240 PANTHER PTHR23293 13 239 5.7E-78 T 23-04-2016 NIDE_RS01885 20a7caacdca53c9a3957ba45f7e7f99d 240 SUPERFAMILY SSF52402 16 202 1.35E-48 T 23-04-2016 NIDE_RS01885 20a7caacdca53c9a3957ba45f7e7f99d 240 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 31 240 1.9E-70 T 23-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 NIDE_RS01885 20a7caacdca53c9a3957ba45f7e7f99d 240 Gene3D G3DSA:3.40.50.620 6 212 6.0E-56 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS10870 bf6ed25e4f0f22865fbb2883b87467f3 112 PANTHER PTHR33495:SF3 1 101 8.5E-12 T 23-04-2016 NIDE_RS10870 bf6ed25e4f0f22865fbb2883b87467f3 112 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 99 2.3E-16 T 23-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 NIDE_RS10870 bf6ed25e4f0f22865fbb2883b87467f3 112 Gene3D G3DSA:3.30.750.24 1 99 1.9E-20 T 23-04-2016 IPR002645 STAS domain NIDE_RS10870 bf6ed25e4f0f22865fbb2883b87467f3 112 PANTHER PTHR33495 1 101 8.5E-12 T 23-04-2016 NIDE_RS10870 bf6ed25e4f0f22865fbb2883b87467f3 112 Pfam PF13466 STAS domain 14 93 5.1E-15 T 23-04-2016 IPR002645 STAS domain NIDE_RS10870 bf6ed25e4f0f22865fbb2883b87467f3 112 SUPERFAMILY SSF52091 1 99 1.96E-19 T 23-04-2016 IPR002645 STAS domain NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 PANTHER PTHR11766 4 399 3.0E-201 T 23-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 8 400 2.6E-116 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 Gene3D G3DSA:3.40.50.620 10 231 8.5E-84 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 Gene3D G3DSA:3.10.290.10 335 399 2.9E-19 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 PANTHER PTHR11766:SF1 4 399 3.0E-201 T 23-04-2016 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 403 44.982 T 23-04-2016 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 50 72 1.9E-26 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 182 204 1.9E-26 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 165 180 1.9E-26 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 215 227 1.9E-26 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 SUPERFAMILY SSF52374 6 310 2.65E-89 T 23-04-2016 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 Pfam PF01479 S4 domain 342 378 4.5E-8 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 56 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 Pfam PF00579 tRNA synthetases class I (W and Y) 34 312 5.5E-76 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 Gene3D G3DSA:1.10.240.10 232 325 7.8E-32 T 23-04-2016 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 SUPERFAMILY SSF55174 295 400 6.15E-14 T 23-04-2016 NIDE_RS12490 693f12242bed1c97c30fa79fc73f5391 405 SMART SM00363 341 404 1.7E-4 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 646 661 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 SUPERFAMILY SSF55781 18 181 2.4E-20 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS16010 74390338865007a8af83255268a77cd0 866 SUPERFAMILY SSF55781 186 348 3.49E-23 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS16010 74390338865007a8af83255268a77cd0 866 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 773 782 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Pfam PF02954 Bacterial regulatory protein, Fis family 816 860 1.4E-8 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Pfam PF00158 Sigma-54 interaction domain 560 726 3.5E-72 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Gene3D G3DSA:3.40.50.300 556 732 3.6E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Pfam PF13185 GAF domain 391 525 7.2E-14 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 SMART SM00065 32 184 2.7E-10 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 SMART SM00065 382 534 4.7E-17 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 SMART SM00065 205 354 7.6E-19 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Pfam PF01590 GAF domain 208 344 1.5E-10 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Gene3D G3DSA:1.10.8.60 733 785 2.3E-26 T 23-04-2016 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 SUPERFAMILY SSF55781 363 539 8.72E-23 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS16010 74390338865007a8af83255268a77cd0 866 PANTHER PTHR32071 508 866 5.6E-158 T 23-04-2016 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Gene3D G3DSA:3.30.450.40 187 347 6.1E-26 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Gene3D G3DSA:3.30.450.40 18 186 1.7E-20 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Gene3D G3DSA:3.30.450.40 359 538 4.1E-24 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS16010 74390338865007a8af83255268a77cd0 866 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 584 597 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 SUPERFAMILY SSF52540 559 797 1.27E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Gene3D G3DSA:1.10.10.60 786 862 1.3E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 SUPERFAMILY SSF46689 771 862 9.86E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 Pfam PF13492 GAF domain 41 176 9.2E-9 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS16010 74390338865007a8af83255268a77cd0 866 SMART SM00382 580 723 7.6E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS09045 60b83be9257d7f79468f375520eaa067 497 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 71 492 1.5E-201 T 23-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath NIDE_RS09045 60b83be9257d7f79468f375520eaa067 497 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 21 492 1.2E-225 T 23-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath NIDE_RS09045 60b83be9257d7f79468f375520eaa067 497 PANTHER PTHR35565:SF3 1 497 7.2E-281 T 23-04-2016 NIDE_RS09045 60b83be9257d7f79468f375520eaa067 497 PANTHER PTHR35565 1 497 7.2E-281 T 23-04-2016 NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 Pfam PF02195 ParB-like nuclease domain 14 95 4.6E-11 T 23-04-2016 IPR003115 ParB/Sulfiredoxin NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 PANTHER PTHR13370 313 392 4.6E-20 T 23-04-2016 NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 SUPERFAMILY SSF110849 9 158 7.15E-36 T 23-04-2016 IPR003115 ParB/Sulfiredoxin NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 PIRSF PIRSF036758 8 413 8.4E-158 T 23-04-2016 IPR015840 DNA methyase, ParB domain-containing NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 SUPERFAMILY SSF53335 163 394 9.31E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 Gene3D G3DSA:3.90.1530.10 8 101 1.3E-18 T 23-04-2016 NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 Gene3D G3DSA:3.40.50.150 161 406 1.1E-52 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 Pfam PF01555 DNA methylase 195 389 1.8E-25 T 23-04-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 332 349 1.1E-19 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 194 208 1.1E-19 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 374 394 1.1E-19 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 351 369 1.1E-19 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 SMART SM00470 11 97 3.1E-14 T 23-04-2016 IPR003115 ParB/Sulfiredoxin NIDE_RS00440 72c085e1f40322cf6bcea6ecf5e63298 413 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 198 204 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NIDE_RS17020 09508d0a95e1891d74281413b9bff35e 92 Pfam PF05164 Cell division protein ZapA 1 82 5.6E-19 T 23-04-2016 IPR007838 Cell division protein ZapA-like NIDE_RS17020 09508d0a95e1891d74281413b9bff35e 92 PANTHER PTHR34981 1 84 1.4E-13 T 23-04-2016 NIDE_RS17020 09508d0a95e1891d74281413b9bff35e 92 PANTHER PTHR34981:SF1 1 84 1.4E-13 T 23-04-2016 NIDE_RS17020 09508d0a95e1891d74281413b9bff35e 92 SUPERFAMILY SSF102829 1 85 7.98E-17 T 23-04-2016 IPR007838 Cell division protein ZapA-like NIDE_RS18395 64be1b39a8cf7b91b670e91339e5ec29 230 Pfam PF03781 Sulfatase-modifying factor enzyme 1 1 221 1.6E-56 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS18395 64be1b39a8cf7b91b670e91339e5ec29 230 PANTHER PTHR23150 1 230 1.5E-64 T 23-04-2016 NIDE_RS18395 64be1b39a8cf7b91b670e91339e5ec29 230 SUPERFAMILY SSF56436 1 223 5.53E-70 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS18395 64be1b39a8cf7b91b670e91339e5ec29 230 Gene3D G3DSA:3.90.1580.10 1 227 1.1E-71 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS10295 57b71bffe8a918ed400b0631162cbf6f 394 SUPERFAMILY SSF56672 3 239 1.42E-40 T 23-04-2016 NIDE_RS10295 57b71bffe8a918ed400b0631162cbf6f 394 Gene3D G3DSA:3.30.1490.100 253 350 1.7E-4 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS10295 57b71bffe8a918ed400b0631162cbf6f 394 Gene3D G3DSA:3.30.70.270 67 162 1.0E-9 T 23-04-2016 NIDE_RS10295 57b71bffe8a918ed400b0631162cbf6f 394 Pfam PF00817 impB/mucB/samB family 18 154 1.6E-23 T 23-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS10295 57b71bffe8a918ed400b0631162cbf6f 394 Gene3D G3DSA:1.10.150.20 172 239 5.4E-9 T 23-04-2016 NIDE_RS10295 57b71bffe8a918ed400b0631162cbf6f 394 SUPERFAMILY SSF100879 252 343 2.12E-5 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS10295 57b71bffe8a918ed400b0631162cbf6f 394 PANTHER PTHR11076 19 345 3.8E-23 T 23-04-2016 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00091 273 339 7.7E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00091 144 212 1.2E-4 T 23-04-2016 IPR000014 PAS domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00091 399 469 8.4E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SUPERFAMILY SSF55785 258 385 2.58E-27 T 23-04-2016 IPR000014 PAS domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SUPERFAMILY SSF55785 384 510 2.09E-23 T 23-04-2016 IPR000014 PAS domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00065 546 698 6.6E-10 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Pfam PF08448 PAS fold 279 388 6.9E-12 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Gene3D G3DSA:3.30.450.20 127 263 2.8E-33 T 23-04-2016 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Gene3D G3DSA:3.40.50.2300 959 1085 1.6E-26 T 23-04-2016 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SUPERFAMILY SSF55781 550 689 1.16E-20 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00448 1107 1223 6.3E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00448 960 1078 4.2E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SUPERFAMILY SSF55785 131 259 3.54E-20 T 23-04-2016 IPR000014 PAS domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Pfam PF00072 Response regulator receiver domain 963 1075 6.2E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Pfam PF00072 Response regulator receiver domain 1109 1223 5.5E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SUPERFAMILY SSF47384 699 779 4.12E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 PANTHER PTHR24423 131 404 2.4E-204 T 23-04-2016 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 PANTHER PTHR24423 1088 1228 2.4E-204 T 23-04-2016 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 PANTHER PTHR24423 711 944 2.4E-204 T 23-04-2016 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SUPERFAMILY SSF52172 959 1090 1.99E-25 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Gene3D G3DSA:3.40.50.2300 1104 1239 2.3E-35 T 23-04-2016 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Pfam PF13426 PAS domain 409 510 4.5E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Pfam PF01590 GAF domain 546 687 1.4E-13 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00388 713 778 6.8E-25 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Gene3D G3DSA:3.30.565.10 786 936 3.4E-48 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SUPERFAMILY SSF47226 1208 1335 1.44E-13 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Gene3D G3DSA:3.30.450.20 264 384 8.1E-27 T 23-04-2016 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Gene3D G3DSA:3.30.450.20 385 510 3.4E-24 T 23-04-2016 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Pfam PF00512 His Kinase A (phospho-acceptor) domain 713 778 1.4E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Pfam PF08447 PAS fold 168 255 4.2E-16 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00086 346 387 15.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00086 472 512 0.04 T 23-04-2016 IPR001610 PAC motif NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00086 219 261 8.4E-6 T 23-04-2016 IPR001610 PAC motif NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Gene3D G3DSA:1.20.120.160 1252 1336 4.0E-13 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SUPERFAMILY SSF52172 1104 1228 1.85E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 825 939 5.1E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 866 880 2.5E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 884 894 2.5E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 901 919 2.5E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 925 938 2.5E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SUPERFAMILY SSF55874 767 936 5.89E-49 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 395 519 9.3E-20 T 23-04-2016 IPR000014 PAS domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 269 394 1.4E-24 T 23-04-2016 IPR000014 PAS domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 267 3.4E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 SMART SM00387 825 941 8.3E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Gene3D G3DSA:3.30.450.40 528 696 3.8E-16 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Gene3D G3DSA:1.10.287.130 707 774 1.5E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20315 d695f9802987393e9be72edab94ceee5 1340 Pfam PF01627 Hpt domain 1260 1336 2.6E-8 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 285 394 8.3E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 SUPERFAMILY SSF55874 233 394 6.55E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 SMART SM00091 65 131 0.0021 T 23-04-2016 IPR000014 PAS domain NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 Gene3D G3DSA:1.10.287.130 172 238 5.1E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 Gene3D G3DSA:3.30.450.20 61 130 4.4E-10 T 23-04-2016 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 SMART SM00388 176 242 9.7E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 SUPERFAMILY SSF55785 54 152 2.09E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 Pfam PF13188 PAS domain 69 117 1.6E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 Gene3D G3DSA:3.30.450.20 131 171 7.9E-4 T 23-04-2016 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 SUPERFAMILY SSF47384 166 241 1.37E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 SMART SM00387 284 396 2.0E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 355 1.9E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 393 1.9E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 374 1.9E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 341 1.9E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 62 116 1.4E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 PANTHER PTHR24423 53 393 1.3E-85 T 23-04-2016 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 Pfam PF00512 His Kinase A (phospho-acceptor) domain 176 239 6.1E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS10435 1530a0869841e8bf7e23bc7286a6ec39 429 Gene3D G3DSA:3.30.565.10 246 393 8.5E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 362 471 3.2E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 SUPERFAMILY SSF158472 196 246 8.11E-5 T 23-04-2016 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 312 1.8E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 SMART SM00388 250 316 1.6E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 SUPERFAMILY SSF55874 306 471 7.2E-50 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 Pfam PF00672 HAMP domain 177 245 5.2E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 470 5.5E-21 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 451 5.5E-21 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 412 5.5E-21 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 426 5.5E-21 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 SMART SM00387 361 473 1.3E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 Gene3D G3DSA:1.10.287.130 240 312 9.5E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 Gene3D G3DSA:3.30.565.10 319 476 4.8E-51 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 SMART SM00304 196 249 1.6E-5 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 SUPERFAMILY SSF47384 233 314 2.35E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 PANTHER PTHR24423 6 28 1.6E-80 T 23-04-2016 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 PANTHER PTHR24423 70 128 1.6E-80 T 23-04-2016 NIDE_RS07195 cc54cd1960293f85f67225812ebbbdc7 481 PANTHER PTHR24423 190 476 1.6E-80 T 23-04-2016 NIDE_RS09735 164d6f7e8a22b59f470f6bb8cbe856c8 186 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 55 90 2.9E-9 T 23-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS09735 164d6f7e8a22b59f470f6bb8cbe856c8 186 Gene3D G3DSA:1.20.5.810 8 52 8.9E-12 T 23-04-2016 NIDE_RS09735 164d6f7e8a22b59f470f6bb8cbe856c8 186 PANTHER PTHR35446:SF1 2 186 3.2E-54 T 23-04-2016 NIDE_RS09735 164d6f7e8a22b59f470f6bb8cbe856c8 186 Pfam PF02627 Carboxymuconolactone decarboxylase family 39 103 7.2E-11 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS09735 164d6f7e8a22b59f470f6bb8cbe856c8 186 Gene3D G3DSA:1.20.1290.10 57 174 4.3E-23 T 23-04-2016 IPR029032 AhpD-like NIDE_RS09735 164d6f7e8a22b59f470f6bb8cbe856c8 186 PANTHER PTHR35446 2 186 3.2E-54 T 23-04-2016 NIDE_RS09735 164d6f7e8a22b59f470f6bb8cbe856c8 186 SUPERFAMILY SSF69118 3 178 5.63E-45 T 23-04-2016 IPR029032 AhpD-like NIDE_RS07470 aab9819370e3e76b10c5564c4ff5cec5 141 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 23-04-2016 IPR030489 Transcription regulator Rrf2-type, conserved site NIDE_RS07470 aab9819370e3e76b10c5564c4ff5cec5 141 Gene3D G3DSA:1.10.10.10 1 139 8.7E-35 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS07470 aab9819370e3e76b10c5564c4ff5cec5 141 PANTHER PTHR33221:SF1 2 134 5.6E-49 T 23-04-2016 NIDE_RS07470 aab9819370e3e76b10c5564c4ff5cec5 141 SUPERFAMILY SSF46785 2 138 5.63E-33 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS07470 aab9819370e3e76b10c5564c4ff5cec5 141 Pfam PF02082 Transcriptional regulator 1 82 1.8E-26 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type NIDE_RS07470 aab9819370e3e76b10c5564c4ff5cec5 141 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 135 2.5E-35 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type NIDE_RS07470 aab9819370e3e76b10c5564c4ff5cec5 141 PANTHER PTHR33221 2 134 5.6E-49 T 23-04-2016 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 211 399 6.0E-76 T 23-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 206 401 40.334 T 23-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 3 205 39.083 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 PANTHER PTHR21327 5 399 3.9E-232 T 23-04-2016 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 SUPERFAMILY SSF55821 3 204 2.52E-84 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 9 200 1.3E-83 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 PIRSF PIRSF001259 3 402 8.0E-179 T 23-04-2016 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 Pfam PF00925 GTP cyclohydrolase II 210 375 3.5E-74 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 5 201 2.8E-74 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 Gene3D G3DSA:3.90.870.10 3 212 1.8E-97 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 PANTHER PTHR21327:SF6 5 399 3.9E-232 T 23-04-2016 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 4 397 53.38 T 23-04-2016 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275|UniPathway: UPA00275 NIDE_RS06410 4bf025053784c9b4ab606fcf66404bba 402 SUPERFAMILY SSF142695 207 377 5.23E-71 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 NIDE_RS12555 5e12e75a3d52534259a0f624d32f63dd 183 PANTHER PTHR22573:SF56 1 172 1.2E-74 T 23-04-2016 NIDE_RS12555 5e12e75a3d52534259a0f624d32f63dd 183 Gene3D G3DSA:3.40.50.2020 8 175 1.5E-73 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS12555 5e12e75a3d52534259a0f624d32f63dd 183 SUPERFAMILY SSF53271 9 173 1.7E-51 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS12555 5e12e75a3d52534259a0f624d32f63dd 183 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 9 172 2.6E-65 T 23-04-2016 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620|UniPathway: UPA00591 NIDE_RS12555 5e12e75a3d52534259a0f624d32f63dd 183 Pfam PF00156 Phosphoribosyl transferase domain 10 159 2.8E-25 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 NIDE_RS12555 5e12e75a3d52534259a0f624d32f63dd 183 PANTHER PTHR22573 1 172 1.2E-74 T 23-04-2016 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 SUPERFAMILY SSF48452 52 214 2.91E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 SUPERFAMILY SSF48452 256 356 2.46E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 PANTHER PTHR23083 251 358 8.5E-28 T 23-04-2016 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 PANTHER PTHR23083 41 214 8.5E-28 T 23-04-2016 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 Gene3D G3DSA:1.25.40.10 266 354 1.4E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 Gene3D G3DSA:1.25.40.10 53 215 1.1E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 Pfam PF13432 Tetratricopeptide repeat 266 313 3.8E-6 T 23-04-2016 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 Pfam PF13432 Tetratricopeptide repeat 97 152 0.0053 T 23-04-2016 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 Pfam PF13432 Tetratricopeptide repeat 156 205 0.0043 T 23-04-2016 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 SMART SM00028 330 363 280.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 SMART SM00028 259 292 7.6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 SMART SM00028 152 185 0.0033 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14560 1f3420e5a23936b6f46823df4867e56c 584 SMART SM00028 84 117 130.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02775 5453aa60a8841662d6e7e8b8fc1806d8 372 SUPERFAMILY SSF54631 233 361 2.53E-24 T 23-04-2016 NIDE_RS02775 5453aa60a8841662d6e7e8b8fc1806d8 372 PANTHER PTHR11911:SF23 144 364 7.1E-25 T 23-04-2016 NIDE_RS02775 5453aa60a8841662d6e7e8b8fc1806d8 372 SMART SM00116 250 298 4.3E-5 T 23-04-2016 IPR000644 CBS domain NIDE_RS02775 5453aa60a8841662d6e7e8b8fc1806d8 372 SMART SM00116 315 362 4.7E-4 T 23-04-2016 IPR000644 CBS domain NIDE_RS02775 5453aa60a8841662d6e7e8b8fc1806d8 372 Pfam PF02163 Peptidase family M50 126 183 4.9E-7 T 23-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 NIDE_RS02775 5453aa60a8841662d6e7e8b8fc1806d8 372 PANTHER PTHR11911 144 364 7.1E-25 T 23-04-2016 NIDE_RS02775 5453aa60a8841662d6e7e8b8fc1806d8 372 PIRSF PIRSF006404 1 369 4.7E-96 T 23-04-2016 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS NIDE_RS02775 5453aa60a8841662d6e7e8b8fc1806d8 372 Gene3D G3DSA:3.20.20.70 242 363 3.8E-22 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS02775 5453aa60a8841662d6e7e8b8fc1806d8 372 Pfam PF00571 CBS domain 243 293 2.3E-10 T 23-04-2016 IPR000644 CBS domain NIDE_RS02775 5453aa60a8841662d6e7e8b8fc1806d8 372 Pfam PF00571 CBS domain 306 356 1.4E-5 T 23-04-2016 IPR000644 CBS domain NIDE_RS09160 36f76edb65bef1373592b0c9c25377f1 80 PANTHER PTHR33713:SF6 1 69 1.4E-15 T 23-04-2016 NIDE_RS09160 36f76edb65bef1373592b0c9c25377f1 80 PANTHER PTHR33713 1 69 1.4E-15 T 23-04-2016 NIDE_RS09160 36f76edb65bef1373592b0c9c25377f1 80 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 54 1.1E-8 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS09160 36f76edb65bef1373592b0c9c25377f1 80 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 68 5.6E-19 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS09160 36f76edb65bef1373592b0c9c25377f1 80 SUPERFAMILY SSF143120 1 78 9.94E-20 T 23-04-2016 NIDE_RS09160 36f76edb65bef1373592b0c9c25377f1 80 Gene3D G3DSA:3.40.1620.10 1 49 1.5E-5 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS04485 a4070c413c11769c0b674a52f5460330 356 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 348 5.5E-150 T 23-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 NIDE_RS04485 a4070c413c11769c0b674a52f5460330 356 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 1 356 37.514 T 23-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 NIDE_RS04485 a4070c413c11769c0b674a52f5460330 356 SMART SM00937 63 178 2.7E-50 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 NIDE_RS04485 a4070c413c11769c0b674a52f5460330 356 Pfam PF00472 RF-1 domain 211 320 6.4E-44 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 NIDE_RS04485 a4070c413c11769c0b674a52f5460330 356 SUPERFAMILY SSF75620 9 347 6.41E-127 T 23-04-2016 NIDE_RS04485 a4070c413c11769c0b674a52f5460330 356 PANTHER PTHR11075:SF9 1 353 8.6E-170 T 23-04-2016 NIDE_RS04485 a4070c413c11769c0b674a52f5460330 356 Pfam PF03462 PCRF domain 9 203 5.0E-64 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 NIDE_RS04485 a4070c413c11769c0b674a52f5460330 356 Gene3D G3DSA:1.20.58.410 4 93 5.4E-12 T 23-04-2016 NIDE_RS04485 a4070c413c11769c0b674a52f5460330 356 PANTHER PTHR11075 1 353 8.6E-170 T 23-04-2016 NIDE_RS04485 a4070c413c11769c0b674a52f5460330 356 Gene3D G3DSA:3.30.160.20 210 288 1.4E-34 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain NIDE_RS05480 0d08fdff41e55b40643b3c0d3ef6e392 311 SUPERFAMILY SSF53335 56 297 1.66E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS05480 0d08fdff41e55b40643b3c0d3ef6e392 311 Gene3D G3DSA:3.40.50.150 109 296 4.4E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS05480 0d08fdff41e55b40643b3c0d3ef6e392 311 PANTHER PTHR18895:SF3 84 297 8.8E-38 T 23-04-2016 NIDE_RS05480 0d08fdff41e55b40643b3c0d3ef6e392 311 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 77 299 2.0E-50 T 23-04-2016 NIDE_RS05480 0d08fdff41e55b40643b3c0d3ef6e392 311 PANTHER PTHR18895 84 297 8.8E-38 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 SUPERFAMILY SSF47336 2060 2130 2.88E-19 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Pfam PF13745 HxxPF-repeated domain 338 428 4.2E-34 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Gene3D G3DSA:3.40.50.980 637 801 2.6E-43 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Gene3D G3DSA:1.10.1200.10 2072 2131 2.2E-27 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Gene3D G3DSA:1.10.1200.10 1003 1065 7.5E-27 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 SUPERFAMILY SSF52777 25 197 1.02E-47 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Pfam PF00501 AMP-binding enzyme 481 890 6.7E-87 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Pfam PF00501 AMP-binding enzyme 1562 1958 2.7E-98 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Gene3D G3DSA:3.40.50.980 479 636 1.6E-42 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 SUPERFAMILY SSF56801 1519 2081 3.01E-165 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 PANTHER PTHR24095 5 2041 0.0 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 SMART SM00823 Phosphopantetheine attachment site 998 1066 9.3E-6 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 SMART SM00823 Phosphopantetheine attachment site 2068 2136 0.0011 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 SUPERFAMILY SSF52777 1096 1296 1.67E-46 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 PANTHER PTHR24095:SF173 5 2041 0.0 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1022 1037 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2092 2107 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 ProSitePatterns PS00455 Putative AMP-binding domain signature. 628 639 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1701 1712 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 SUPERFAMILY SSF56801 439 1010 6.02E-147 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Gene3D G3DSA:3.40.50.980 1721 1868 3.4E-47 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 SUPERFAMILY SSF52777 205 450 5.11E-63 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 SUPERFAMILY SSF47336 990 1063 1.19E-19 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Pfam PF00668 Condensation domain 1098 1398 1.2E-71 T 23-04-2016 IPR001242 Condensation domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Pfam PF00668 Condensation domain 23 316 9.1E-74 T 23-04-2016 IPR001242 Condensation domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Gene3D G3DSA:2.30.38.10 802 880 7.9E-26 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Gene3D G3DSA:2.30.38.10 1869 1948 3.7E-29 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 SUPERFAMILY SSF52777 1281 1545 6.67E-58 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Pfam PF13193 AMP-binding enzyme C-terminal domain 898 973 2.0E-8 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Pfam PF13193 AMP-binding enzyme C-terminal domain 1966 2041 1.3E-9 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Gene3D G3DSA:3.40.50.980 1556 1718 5.4E-44 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Gene3D G3DSA:3.30.300.30 885 1002 1.8E-40 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Gene3D G3DSA:3.30.300.30 1953 2071 4.2E-41 T 23-04-2016 NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Pfam PF00550 Phosphopantetheine attachment site 1000 1062 9.1E-14 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 Pfam PF00550 Phosphopantetheine attachment site 2069 2129 7.5E-14 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 502 913 4.0E-126 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS09880 eb68e14a8efa6e19ed80948aaf71b137 2170 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1581 1982 1.4E-139 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS06525 fa5502c9b000760fc68b3f4a96ab885a 480 Pfam PF13181 Tetratricopeptide repeat 125 156 0.11 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06525 fa5502c9b000760fc68b3f4a96ab885a 480 SUPERFAMILY SSF48452 121 240 7.97E-16 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS06525 fa5502c9b000760fc68b3f4a96ab885a 480 Gene3D G3DSA:1.25.40.10 123 247 1.3E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS06525 fa5502c9b000760fc68b3f4a96ab885a 480 SMART SM00028 123 156 0.23 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06525 fa5502c9b000760fc68b3f4a96ab885a 480 SMART SM00028 157 190 0.59 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06525 fa5502c9b000760fc68b3f4a96ab885a 480 PANTHER PTHR23083 123 231 2.7E-14 T 23-04-2016 NIDE_RS10525 c8b950e1f37542113fbee7111f2bda66 122 Pfam PF04347 Flagellar biosynthesis protein, FliO 33 91 3.9E-7 T 23-04-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 Gene3D G3DSA:3.40.50.620 171 328 6.3E-20 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 Gene3D G3DSA:3.40.50.620 1 163 2.6E-22 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 PRINTS PR01438 Universal stress protein signature 2 20 1.4E-6 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 PRINTS PR01438 Universal stress protein signature 139 161 1.4E-6 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 PRINTS PR01438 Universal stress protein signature 121 133 1.4E-6 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 PANTHER PTHR31964 1 164 3.7E-15 T 23-04-2016 NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 624 664 1.5E-6 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 521 560 7.7E-9 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 345 388 5.0E-11 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 SUPERFAMILY SSF57802 461 492 1.05E-6 T 23-04-2016 NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 SUPERFAMILY SSF52402 1 162 5.19E-19 T 23-04-2016 NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 Gene3D G3DSA:2.20.28.10 459 493 9.0E-11 T 23-04-2016 IPR004039 Rubredoxin-type fold NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 SUPERFAMILY SSF52402 170 326 3.01E-17 T 23-04-2016 NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 Pfam PF00582 Universal stress protein family 171 326 9.2E-15 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS02605 0b1782f1d011b4ee51f90b81a526091d 703 Pfam PF00582 Universal stress protein family 1 154 1.2E-14 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS08240 2985576eb84567f562f96f162929eaff 620 Pfam PF00271 Helicase conserved C-terminal domain 72 158 1.3E-5 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS08240 2985576eb84567f562f96f162929eaff 620 SMART SM01142 456 616 2.7E-14 T 23-04-2016 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal NIDE_RS08240 2985576eb84567f562f96f162929eaff 620 Gene3D G3DSA:3.40.50.300 10 44 5.6E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08240 2985576eb84567f562f96f162929eaff 620 Gene3D G3DSA:3.40.50.300 81 163 5.6E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08240 2985576eb84567f562f96f162929eaff 620 SUPERFAMILY SSF52540 9 171 2.93E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08240 2985576eb84567f562f96f162929eaff 620 SMART SM00490 52 158 9.4E-10 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS08240 2985576eb84567f562f96f162929eaff 620 Pfam PF08148 DSHCT (NUC185) domain 460 615 3.3E-21 T 23-04-2016 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal NIDE_RS08335 ef3b1a2064f073bbbb6a348d7cc8c185 90 PANTHER PTHR38031:SF1 1 90 1.5E-23 T 23-04-2016 NIDE_RS08335 ef3b1a2064f073bbbb6a348d7cc8c185 90 Pfam PF02597 ThiS family 4 90 1.1E-17 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 NIDE_RS08335 ef3b1a2064f073bbbb6a348d7cc8c185 90 PANTHER PTHR38031 1 90 1.5E-23 T 23-04-2016 NIDE_RS08335 ef3b1a2064f073bbbb6a348d7cc8c185 90 TIGRFAM TIGR01687 moaD_arch: MoaD family protein 4 90 2.1E-14 T 23-04-2016 IPR010038 MoaD, archaeal-type NIDE_RS08335 ef3b1a2064f073bbbb6a348d7cc8c185 90 Gene3D G3DSA:3.10.20.30 2 88 2.0E-30 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS08335 ef3b1a2064f073bbbb6a348d7cc8c185 90 SUPERFAMILY SSF54285 1 90 1.74E-26 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NIDE_RS09380 65da1de87147a4c86a39d732880fddb5 423 Pfam PF02687 FtsX-like permease family 293 416 2.2E-22 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS09380 65da1de87147a4c86a39d732880fddb5 423 PANTHER PTHR30489 3 423 7.0E-72 T 23-04-2016 NIDE_RS09380 65da1de87147a4c86a39d732880fddb5 423 Pfam PF12704 MacB-like periplasmic core domain 25 261 1.5E-15 T 23-04-2016 IPR025857 MacB-like periplasmic core domain NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 Gene3D G3DSA:3.50.50.60 365 420 1.9E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 Gene3D G3DSA:3.50.50.60 6 200 1.9E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 SUPERFAMILY SSF160996 203 366 1.26E-31 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 9 418 4.3E-117 T 23-04-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 PANTHER PTHR10617:SF103 5 311 1.3E-90 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 PANTHER PTHR10617:SF103 356 421 1.3E-90 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 178 2.5E-6 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.5E-6 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 166 184 1.2E-7 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 373 395 1.2E-7 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.2E-7 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 Pfam PF03486 HI0933-like protein 7 418 6.8E-112 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 PANTHER PTHR10617 5 311 1.3E-90 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 PANTHER PTHR10617 356 421 1.3E-90 T 23-04-2016 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 SUPERFAMILY SSF51905 5 202 2.29E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 SUPERFAMILY SSF51905 363 420 2.29E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS16535 433b4d6c3348fc5a871ab4a817b72256 436 Gene3D G3DSA:2.40.30.10 203 299 5.5E-13 T 23-04-2016 NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 SUPERFAMILY SSF56420 2 168 5.76E-58 T 23-04-2016 IPR023635 Peptide deformylase NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 Hamap MF_00163 Peptide deformylase [def]. 2 167 28.749 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 Pfam PF01327 Polypeptide deformylase 5 154 1.6E-49 T 23-04-2016 IPR023635 Peptide deformylase NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 PIRSF PIRSF004749 1 175 4.5E-53 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 PANTHER PTHR10458 1 167 6.6E-70 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 Gene3D G3DSA:3.90.45.10 5 169 9.1E-61 T 23-04-2016 IPR023635 Peptide deformylase NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 10 160 6.0E-43 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 PRINTS PR01576 Peptide deformylase signature 36 65 3.1E-35 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 PRINTS PR01576 Peptide deformylase signature 125 154 3.1E-35 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 PRINTS PR01576 Peptide deformylase signature 94 105 3.1E-35 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS08295 e0b571ca74f95eb5fb7832dfd27373c9 176 PRINTS PR01576 Peptide deformylase signature 106 124 3.1E-35 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 Gene3D G3DSA:3.40.1360.10 250 369 3.1E-40 T 23-04-2016 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 Hamap MF_00974 DNA primase [dnaG]. 5 594 27.329 T 23-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 PIRSF PIRSF002811 3 601 3.6E-154 T 23-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 Pfam PF01807 CHC2 zinc finger 7 100 1.1E-34 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 SMART SM00493 268 339 6.5E-19 T 23-04-2016 IPR006171 Toprim domain NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 Pfam PF13662 Toprim domain 269 344 2.3E-18 T 23-04-2016 IPR006171 Toprim domain NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 PANTHER PTHR30313 4 446 6.7E-139 T 23-04-2016 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 TIGRFAM TIGR01391 dnaG: DNA primase 6 424 7.0E-130 T 23-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 260 2.0E-37 T 23-04-2016 IPR013264 DNA primase, catalytic core, N-terminal NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 SMART SM00400 37 91 8.2E-31 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 Gene3D G3DSA:3.90.580.10 5 101 9.0E-36 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 SUPERFAMILY SSF56731 118 432 3.4E-95 T 23-04-2016 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 SUPERFAMILY SSF57783 6 100 2.72E-32 T 23-04-2016 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 Pfam PF10410 DnaB-helicase binding domain of primase 376 430 2.6E-10 T 23-04-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 NIDE_RS04545 083a579ad342e87061335d2e358c3b5d 614 Gene3D G3DSA:3.90.980.10 118 249 1.9E-40 T 23-04-2016 IPR013264 DNA primase, catalytic core, N-terminal NIDE_RS10895 e37bf2356edc2906f071e0a81372351b 74 SUPERFAMILY SSF143100 5 50 1.83E-10 T 23-04-2016 NIDE_RS10895 e37bf2356edc2906f071e0a81372351b 74 PANTHER PTHR34504 3 49 7.0E-13 T 23-04-2016 NIDE_RS10895 e37bf2356edc2906f071e0a81372351b 74 PANTHER PTHR34504:SF1 3 49 7.0E-13 T 23-04-2016 NIDE_RS06160 33f2d7f0ae8bd4d591ad051ea8823b51 149 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 146 21.524 T 23-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 NIDE_RS06160 33f2d7f0ae8bd4d591ad051ea8823b51 149 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 144 3.6E-36 T 23-04-2016 IPR021131 Ribosomal protein L18e/L15P NIDE_RS06160 33f2d7f0ae8bd4d591ad051ea8823b51 149 PANTHER PTHR12934 1 147 8.6E-67 T 23-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 NIDE_RS06160 33f2d7f0ae8bd4d591ad051ea8823b51 149 SUPERFAMILY SSF52080 4 143 6.8E-46 T 23-04-2016 IPR021131 Ribosomal protein L18e/L15P NIDE_RS06160 33f2d7f0ae8bd4d591ad051ea8823b51 149 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 5.0E-54 T 23-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 NIDE_RS06160 33f2d7f0ae8bd4d591ad051ea8823b51 149 Gene3D G3DSA:3.100.10.10 32 146 1.2E-36 T 23-04-2016 NIDE_RS06160 33f2d7f0ae8bd4d591ad051ea8823b51 149 ProSitePatterns PS00475 Ribosomal protein L15 signature. 110 140 - T 23-04-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS16650 c9d7266a47016eb6bd0a886d4d833090 152 PANTHER PTHR11911 89 143 1.6E-27 T 23-04-2016 NIDE_RS16650 c9d7266a47016eb6bd0a886d4d833090 152 PANTHER PTHR11911 15 73 1.6E-27 T 23-04-2016 NIDE_RS16650 c9d7266a47016eb6bd0a886d4d833090 152 SUPERFAMILY SSF54631 11 146 3.18E-32 T 23-04-2016 NIDE_RS16650 c9d7266a47016eb6bd0a886d4d833090 152 Gene3D G3DSA:3.10.580.10 15 145 5.2E-31 T 23-04-2016 NIDE_RS16650 c9d7266a47016eb6bd0a886d4d833090 152 Pfam PF00571 CBS domain 90 144 1.3E-15 T 23-04-2016 IPR000644 CBS domain NIDE_RS16650 c9d7266a47016eb6bd0a886d4d833090 152 Pfam PF00571 CBS domain 16 69 5.2E-12 T 23-04-2016 IPR000644 CBS domain NIDE_RS16650 c9d7266a47016eb6bd0a886d4d833090 152 SMART SM00116 97 145 3.6E-10 T 23-04-2016 IPR000644 CBS domain NIDE_RS16650 c9d7266a47016eb6bd0a886d4d833090 152 SMART SM00116 23 70 1.1E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS06445 47c14c100cd1a37590443d696a0230a2 79 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 1 78 22.545 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS06445 47c14c100cd1a37590443d696a0230a2 79 Gene3D G3DSA:3.30.1280.10 1 78 9.0E-36 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS06445 47c14c100cd1a37590443d696a0230a2 79 SUPERFAMILY SSF82697 1 77 1.48E-29 T 23-04-2016 NIDE_RS06445 47c14c100cd1a37590443d696a0230a2 79 PANTHER PTHR34696 1 78 1.7E-28 T 23-04-2016 NIDE_RS06445 47c14c100cd1a37590443d696a0230a2 79 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 1 78 9.5E-32 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS06445 47c14c100cd1a37590443d696a0230a2 79 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 2 78 1.3E-34 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS06445 47c14c100cd1a37590443d696a0230a2 79 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 8 78 4.0E-20 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS12320 5e24e8e0538b69d06c342446b00b40f8 253 SUPERFAMILY SSF55729 8 124 3.09E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS12320 5e24e8e0538b69d06c342446b00b40f8 253 Pfam PF00583 Acetyltransferase (GNAT) family 43 118 3.4E-11 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS12320 5e24e8e0538b69d06c342446b00b40f8 253 Gene3D G3DSA:3.40.630.30 23 124 1.4E-19 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 PANTHER PTHR30295 1 154 1.1E-34 T 23-04-2016 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 SUPERFAMILY SSF47240 1 156 7.09E-40 T 23-04-2016 IPR009078 Ferritin-like superfamily NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 PRINTS PR00601 Bacterioferritin signature 65 85 1.0E-37 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 PRINTS PR00601 Bacterioferritin signature 86 106 1.0E-37 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 PRINTS PR00601 Bacterioferritin signature 107 127 1.0E-37 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 PRINTS PR00601 Bacterioferritin signature 128 149 1.0E-37 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 PRINTS PR00601 Bacterioferritin signature 44 64 1.0E-37 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 PRINTS PR00601 Bacterioferritin signature 3 22 1.0E-37 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 PRINTS PR00601 Bacterioferritin signature 23 43 1.0E-37 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 Gene3D G3DSA:1.20.1260.10 1 157 1.6E-46 T 23-04-2016 IPR012347 Ferritin-related NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 PANTHER PTHR30295:SF9 1 154 1.1E-34 T 23-04-2016 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 PIRSF PIRSF002560 1 157 1.2E-50 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 2.8E-43 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04710 0839938de22ea7f5c6efe0e7633bb607 159 Pfam PF00210 Ferritin-like domain 9 143 1.8E-31 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 NIDE_RS21115 7e5935bb67bf330fc0c4abde4c2c8963 236 Pfam PF13646 HEAT repeats 107 182 1.9E-13 T 23-04-2016 NIDE_RS21115 7e5935bb67bf330fc0c4abde4c2c8963 236 PANTHER PTHR12697:SF18 97 218 4.8E-13 T 23-04-2016 NIDE_RS21115 7e5935bb67bf330fc0c4abde4c2c8963 236 PANTHER PTHR12697 97 218 4.8E-13 T 23-04-2016 NIDE_RS21115 7e5935bb67bf330fc0c4abde4c2c8963 236 Gene3D G3DSA:1.25.10.10 108 218 5.1E-19 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS21115 7e5935bb67bf330fc0c4abde4c2c8963 236 SMART SM00567 E-Z type HEAT repeats 113 142 3.6E-6 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21115 7e5935bb67bf330fc0c4abde4c2c8963 236 SMART SM00567 E-Z type HEAT repeats 174 202 120.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21115 7e5935bb67bf330fc0c4abde4c2c8963 236 SUPERFAMILY SSF48371 102 205 1.61E-17 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS01010 9379355f6852180b224c98614099b718 545 Gene3D G3DSA:3.30.565.10 215 383 2.4E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01010 9379355f6852180b224c98614099b718 545 PANTHER PTHR24423:SF458 129 521 6.9E-136 T 23-04-2016 NIDE_RS01010 9379355f6852180b224c98614099b718 545 SUPERFAMILY SSF55874 208 383 1.57E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01010 9379355f6852180b224c98614099b718 545 SMART SM00448 5 117 1.0E-5 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS01010 9379355f6852180b224c98614099b718 545 SMART SM00448 402 515 6.9E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS01010 9379355f6852180b224c98614099b718 545 SMART SM00387 259 382 1.3E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01010 9379355f6852180b224c98614099b718 545 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 260 380 2.6E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01010 9379355f6852180b224c98614099b718 545 SUPERFAMILY SSF47384 142 215 9.02E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS01010 9379355f6852180b224c98614099b718 545 PANTHER PTHR24423 129 521 6.9E-136 T 23-04-2016 NIDE_RS01010 9379355f6852180b224c98614099b718 545 Pfam PF00512 His Kinase A (phospho-acceptor) domain 153 216 1.3E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS01010 9379355f6852180b224c98614099b718 545 Gene3D G3DSA:3.40.50.2300 401 522 8.9E-31 T 23-04-2016 NIDE_RS01010 9379355f6852180b224c98614099b718 545 SUPERFAMILY SSF52172 4 143 5.55E-20 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS01010 9379355f6852180b224c98614099b718 545 SUPERFAMILY SSF52172 402 520 2.28E-29 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS01010 9379355f6852180b224c98614099b718 545 Gene3D G3DSA:1.10.287.130 145 214 2.0E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS01010 9379355f6852180b224c98614099b718 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 360 2.2E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01010 9379355f6852180b224c98614099b718 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 311 325 2.2E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01010 9379355f6852180b224c98614099b718 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 379 2.2E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01010 9379355f6852180b224c98614099b718 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 329 339 2.2E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01010 9379355f6852180b224c98614099b718 545 SMART SM00388 152 218 8.6E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS01010 9379355f6852180b224c98614099b718 545 Gene3D G3DSA:3.40.50.2300 3 122 7.3E-20 T 23-04-2016 NIDE_RS01010 9379355f6852180b224c98614099b718 545 Pfam PF00072 Response regulator receiver domain 13 110 1.2E-11 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS01010 9379355f6852180b224c98614099b718 545 Pfam PF00072 Response regulator receiver domain 404 515 7.1E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 9 205 1.2E-57 T 23-04-2016 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 PIRSF PIRSF036428 2 412 3.8E-126 T 23-04-2016 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|KEGG: 00860+2.1.1.132|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00148 NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 195 8.4E-25 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 Gene3D G3DSA:3.40.50.150 230 412 7.4E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 SUPERFAMILY SSF53790 7 208 1.1E-42 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 Gene3D G3DSA:3.30.950.10 111 210 1.6E-22 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 SUPERFAMILY SSF53335 213 398 1.2E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 PANTHER PTHR14741:SF34 237 373 1.6E-48 T 23-04-2016 NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 239 360 8.1E-40 T 23-04-2016 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 249 357 6.5E-8 T 23-04-2016 NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 PANTHER PTHR14741 237 373 1.6E-48 T 23-04-2016 NIDE_RS09575 b141ac70a64cfa274e3670a6b2df1386 418 Gene3D G3DSA:3.40.1010.10 6 110 4.1E-26 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 NIDE_RS12360 09995d224ac9b358d0dd7141ab8d78b8 416 Gene3D G3DSA:3.40.50.1110 105 196 6.4E-19 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS12360 09995d224ac9b358d0dd7141ab8d78b8 416 Gene3D G3DSA:3.40.50.1110 303 400 6.4E-19 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS12360 09995d224ac9b358d0dd7141ab8d78b8 416 SUPERFAMILY SSF52266 104 202 7.55E-19 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS12360 09995d224ac9b358d0dd7141ab8d78b8 416 SUPERFAMILY SSF52266 316 401 7.55E-19 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 PANTHER PTHR11911 9 274 8.3E-35 T 23-04-2016 NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 SUPERFAMILY SSF54631 154 269 2.02E-26 T 23-04-2016 NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 PANTHER PTHR11911:SF68 9 274 8.3E-35 T 23-04-2016 NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 SMART SM00116 223 270 4.7E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 SMART SM00116 158 205 4.0E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 SMART SM00116 16 69 0.018 T 23-04-2016 IPR000644 CBS domain NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 SMART SM00116 87 134 1.3E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 Gene3D G3DSA:3.10.580.10 8 131 2.5E-28 T 23-04-2016 NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 Gene3D G3DSA:3.10.580.10 148 267 6.2E-28 T 23-04-2016 NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 SUPERFAMILY SSF54631 8 135 1.34E-26 T 23-04-2016 NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 Pfam PF00571 CBS domain 154 205 4.4E-10 T 23-04-2016 IPR000644 CBS domain NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 Pfam PF00571 CBS domain 9 68 7.9E-7 T 23-04-2016 IPR000644 CBS domain NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 Pfam PF00571 CBS domain 81 133 5.7E-12 T 23-04-2016 IPR000644 CBS domain NIDE_RS21035 7536fa454fccef6bcc179cabedba71e7 284 Pfam PF00571 CBS domain 216 267 1.7E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS15275 1ee0aa8316ac4786ce03df862697c34c 269 SUPERFAMILY SSF52540 30 269 5.87E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15275 1ee0aa8316ac4786ce03df862697c34c 269 Hamap MF_02040 Iron-sulfur cluster carrier protein. 22 269 32.148 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein NIDE_RS15275 1ee0aa8316ac4786ce03df862697c34c 269 Gene3D G3DSA:3.40.50.300 21 269 2.7E-90 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15275 1ee0aa8316ac4786ce03df862697c34c 269 PANTHER PTHR23264 20 269 1.5E-111 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein NIDE_RS15275 1ee0aa8316ac4786ce03df862697c34c 269 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 27 269 2.9E-88 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein NIDE_RS11720 005713c39a801ee8f7ecf58d0a61bf33 263 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 10 252 35.752 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 NIDE_RS11720 005713c39a801ee8f7ecf58d0a61bf33 263 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 11 244 2.4E-59 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 NIDE_RS11720 005713c39a801ee8f7ecf58d0a61bf33 263 Pfam PF02348 Cytidylyltransferase 14 226 1.3E-46 T 23-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 NIDE_RS11720 005713c39a801ee8f7ecf58d0a61bf33 263 PANTHER PTHR21485 11 244 6.4E-86 T 23-04-2016 NIDE_RS11720 005713c39a801ee8f7ecf58d0a61bf33 263 PANTHER PTHR21485:SF4 11 244 6.4E-86 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 NIDE_RS11720 005713c39a801ee8f7ecf58d0a61bf33 263 SUPERFAMILY SSF53448 12 252 1.54E-57 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS11720 005713c39a801ee8f7ecf58d0a61bf33 263 Gene3D G3DSA:3.90.550.10 11 246 2.1E-69 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 SUPERFAMILY SSF52540 257 390 5.14E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 SUPERFAMILY SSF52540 29 208 5.14E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 Pfam PF00271 Helicase conserved C-terminal domain 286 387 6.8E-15 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 PANTHER PTHR24031 1356 1362 7.8E-73 T 23-04-2016 NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 Gene3D G3DSA:3.40.50.300 9 204 1.1E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 PANTHER PTHR24031:SF336 259 435 7.8E-73 T 23-04-2016 NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 Pfam PF08494 DEAD/H associated 655 860 5.4E-58 T 23-04-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 SMART SM00487 17 234 1.7E-33 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 SMART SM00490 308 387 1.7E-15 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 PANTHER PTHR24031:SF336 1356 1362 7.8E-73 T 23-04-2016 NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 Pfam PF00270 DEAD/DEAH box helicase 22 205 4.2E-31 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 PANTHER PTHR24031 9 231 7.8E-73 T 23-04-2016 NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 PANTHER PTHR24031 259 435 7.8E-73 T 23-04-2016 NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 Gene3D G3DSA:3.40.50.300 277 405 4.1E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05390 dfd7c4ae24dd5a4f441f6bada0a86907 1420 PANTHER PTHR24031:SF336 9 231 7.8E-73 T 23-04-2016 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 PANTHER PTHR30603 9 157 2.0E-212 T 23-04-2016 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 PANTHER PTHR30603 321 601 2.0E-212 T 23-04-2016 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 PANTHER PTHR30603:SF0 9 157 2.0E-212 T 23-04-2016 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 PANTHER PTHR30603:SF0 321 601 2.0E-212 T 23-04-2016 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 SUPERFAMILY SSF88659 496 597 1.64E-26 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 Gene3D G3DSA:1.10.10.10 529 599 4.6E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 Pfam PF00140 Sigma-70 factor, region 1.2 103 135 1.0E-13 T 23-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 SUPERFAMILY SSF88659 439 512 6.54E-23 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 390 403 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 Pfam PF04539 Sigma-70 region 3 445 521 8.2E-32 T 23-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 Pfam PF04542 Sigma-70 region 2 366 435 3.8E-22 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 Pfam PF04546 Sigma-70, non-essential region 145 277 2.3E-9 T 23-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 Gene3D G3DSA:1.10.10.10 439 490 3.7E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 363 598 5.3E-122 T 23-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 559 585 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 SUPERFAMILY SSF88946 120 433 1.44E-71 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 PRINTS PR00046 Major sigma-70 factor signature 414 422 5.2E-30 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 PRINTS PR00046 Major sigma-70 factor signature 538 550 5.2E-30 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 PRINTS PR00046 Major sigma-70 factor signature 574 585 5.2E-30 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 PRINTS PR00046 Major sigma-70 factor signature 559 574 5.2E-30 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 PRINTS PR00046 Major sigma-70 factor signature 390 403 5.2E-30 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 364 587 2.6E-38 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 Gene3D G3DSA:1.10.601.10 117 435 7.0E-85 T 23-04-2016 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 Pfam PF04545 Sigma-70, region 4 534 587 2.1E-17 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 Pfam PF03979 Sigma-70 factor, region 1.1 9 84 1.4E-20 T 23-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 NIDE_RS04550 76e169fae101dbcd86e631e11f6c0e54 601 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 5 599 38.132 T 23-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 369 4.6E-35 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 PANTHER PTHR22573:SF15 1 449 2.7E-168 T 23-04-2016 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 445 4.0E-192 T 23-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 Gene3D G3DSA:3.30.310.50 372 446 1.1E-15 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 2 133 5.0E-44 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 Gene3D G3DSA:3.40.120.10 1 138 2.9E-48 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 8.7E-13 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 8.7E-13 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 176 195 8.7E-13 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 SUPERFAMILY SSF53738 158 258 3.92E-28 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 SUPERFAMILY SSF55957 360 448 1.57E-20 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 PANTHER PTHR22573 1 449 2.7E-168 T 23-04-2016 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 23-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 SUPERFAMILY SSF53738 260 368 7.06E-33 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 SUPERFAMILY SSF53738 3 183 4.71E-48 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 Gene3D G3DSA:3.40.120.10 254 370 2.8E-37 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 447 47.342 T 23-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 Gene3D G3DSA:3.40.120.10 178 252 1.5E-26 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 159 256 3.9E-17 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS12540 2302ffd4db304e4cb047ed3388624326 449 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 444 1.9E-13 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 SUPERFAMILY SSF82693 40 124 6.8E-22 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 Pfam PF00873 AcrB/AcrD/AcrF family 6 1014 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 SUPERFAMILY SSF82693 556 652 6.28E-17 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 Gene3D G3DSA:3.30.70.1430 40 142 1.3E-27 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 SUPERFAMILY SSF82693 137 182 2.44E-22 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 Gene3D G3DSA:3.30.2090.10 711 790 1.1E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 Gene3D G3DSA:3.30.2090.10 183 265 1.4E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 SUPERFAMILY SSF82866 290 490 1.14E-48 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 SUPERFAMILY SSF82714 709 790 1.1E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 SUPERFAMILY SSF82714 183 266 3.4E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 Gene3D G3DSA:1.20.1640.10 285 496 2.2E-57 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 Gene3D G3DSA:1.10.3850.10 799 1016 3.7E-55 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 2.8E-78 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 2.8E-78 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.8E-78 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 2.8E-78 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 2.8E-78 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 2.8E-78 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.8E-78 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 2.8E-78 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 2.8E-78 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 SUPERFAMILY SSF82866 797 1018 1.03E-41 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 Gene3D G3DSA:3.30.70.1430 559 646 1.9E-12 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 SUPERFAMILY SSF82693 268 324 2.44E-22 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PANTHER PTHR32063 1 1026 0.0 T 23-04-2016 NIDE_RS16150 99e3a8a1819fcb44b8caa9326b5ff981 1033 PANTHER PTHR32063:SF34 1 1026 0.0 T 23-04-2016 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 SUPERFAMILY SSF50156 376 467 4.47E-16 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 Gene3D G3DSA:2.40.10.10 37 155 2.4E-32 T 23-04-2016 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 PRINTS PR00834 HtrA/DegQ protease family signature 196 213 1.2E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 PRINTS PR00834 HtrA/DegQ protease family signature 218 235 1.2E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 PRINTS PR00834 HtrA/DegQ protease family signature 121 141 1.2E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 PRINTS PR00834 HtrA/DegQ protease family signature 304 316 1.2E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 PRINTS PR00834 HtrA/DegQ protease family signature 161 185 1.2E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 PRINTS PR00834 HtrA/DegQ protease family signature 100 112 1.2E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 SUPERFAMILY SSF50156 222 345 2.37E-19 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 Pfam PF13365 Trypsin-like peptidase domain 91 225 1.7E-34 T 23-04-2016 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 PANTHER PTHR22939 3 373 1.2E-106 T 23-04-2016 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 Gene3D G3DSA:2.40.10.10 156 265 1.2E-42 T 23-04-2016 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 SUPERFAMILY SSF50494 42 261 5.47E-63 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 45 465 1.5E-130 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 PANTHER PTHR22939:SF79 3 373 1.2E-106 T 23-04-2016 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 398 438 3.8E-7 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 Gene3D G3DSA:2.30.42.10 266 362 4.3E-22 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 Gene3D G3DSA:2.30.42.10 377 467 2.0E-16 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 SMART SM00228 377 460 2.9E-6 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 SMART SM00228 264 346 8.8E-8 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS03135 50c7928c9e0dfe2a5778c80074c2af5e 470 Pfam PF13180 PDZ domain 264 355 4.9E-12 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 3 617 42.772 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 PANTHER PTHR11624 238 617 2.6E-281 T 23-04-2016 IPR033247 Transketolase family NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 PANTHER PTHR11624:SF20 17 211 2.6E-281 T 23-04-2016 NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 PANTHER PTHR11624:SF20 238 617 2.6E-281 T 23-04-2016 NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 ProSitePatterns PS00801 Transketolase signature 1. 29 48 - T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 SUPERFAMILY SSF52518 2 192 3.58E-73 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 SUPERFAMILY SSF52518 240 377 3.58E-73 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 SMART SM00861 315 479 4.6E-65 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 4 279 2.3E-113 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 Pfam PF02779 Transketolase, pyrimidine binding domain 319 473 2.7E-40 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 SUPERFAMILY SSF52518 315 501 5.89E-61 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 PANTHER PTHR11624 17 211 2.6E-281 T 23-04-2016 IPR033247 Transketolase family NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 SUPERFAMILY SSF52922 487 617 1.7E-38 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 5 616 1.5E-246 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 Gene3D G3DSA:3.40.50.970 236 291 2.5E-55 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 Gene3D G3DSA:3.40.50.970 2 188 2.5E-55 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 Gene3D G3DSA:3.40.50.970 292 491 1.0E-66 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 Gene3D G3DSA:3.40.50.920 492 617 1.0E-40 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS04000 f988c5d0f07eb318ec36ebcee300119e 617 Pfam PF02780 Transketolase, C-terminal domain 491 613 2.2E-35 T 23-04-2016 IPR033248 Transketolase, C-terminal domain NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 SUPERFAMILY SSF51735 1 231 5.48E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 Pfam PF00106 short chain dehydrogenase 1 187 8.6E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 7.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 7.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 7.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 7.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 7.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PANTHER PTHR24322:SF328 1 130 9.5E-52 T 23-04-2016 NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PANTHER PTHR24322:SF328 146 178 9.5E-52 T 23-04-2016 NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PANTHER PTHR24322 1 130 9.5E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PANTHER PTHR24322 146 178 9.5E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 1.9E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 1.9E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 1.9E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS11335 460953c4f37b619f0c3076d0a4b6c749 233 Gene3D G3DSA:3.40.50.720 1 229 1.5E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS20095 d0bd22df223b48a63763c7c5c1e75b0a 175 SUPERFAMILY SSF54060 72 138 1.77E-11 T 23-04-2016 NIDE_RS20095 d0bd22df223b48a63763c7c5c1e75b0a 175 Pfam PF02945 Recombination endonuclease VII 71 133 4.9E-15 T 23-04-2016 IPR004211 Recombination endonuclease VII NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 Pfam PF05746 DALR anticodon binding domain 439 584 5.0E-29 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 SMART SM01016 8 97 2.2E-18 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 30 526 3.1E-121 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 SUPERFAMILY SSF47323 433 584 1.31E-28 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 SMART SM00836 439 584 2.0E-46 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 11 96 1.5E-16 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 Hamap MF_00123 Arginine--tRNA ligase [argS]. 8 584 25.985 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 Gene3D G3DSA:3.40.50.620 121 442 1.4E-101 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 Gene3D G3DSA:3.30.1360.70 9 116 1.2E-21 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 PANTHER PTHR11956:SF6 552 584 6.5E-200 T 23-04-2016 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 SUPERFAMILY SSF52374 120 450 1.91E-86 T 23-04-2016 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 PANTHER PTHR11956:SF6 6 530 6.5E-200 T 23-04-2016 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 136 145 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 Pfam PF00750 tRNA synthetases class I (R) 113 404 2.4E-27 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 Gene3D G3DSA:1.10.730.10 443 584 1.3E-39 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 SUPERFAMILY SSF55190 13 117 1.57E-16 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 PANTHER PTHR11956 6 530 6.5E-200 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 PRINTS PR01038 Arginyl-tRNA synthetase signature 308 329 6.5E-23 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 PRINTS PR01038 Arginyl-tRNA synthetase signature 126 141 6.5E-23 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 PRINTS PR01038 Arginyl-tRNA synthetase signature 141 157 6.5E-23 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 PRINTS PR01038 Arginyl-tRNA synthetase signature 165 178 6.5E-23 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS15030 56eaef89f69a7e87f33b9d0e6df5173b 584 PANTHER PTHR11956 552 584 6.5E-200 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 NIDE_RS08065 e24b67f63df811a133a8977200a5bdf9 285 PANTHER PTHR33525:SF3 16 285 2.7E-49 T 23-04-2016 NIDE_RS08065 e24b67f63df811a133a8977200a5bdf9 285 Gene3D G3DSA:1.10.3150.10 5 274 1.3E-72 T 23-04-2016 IPR013976 Metal-dependent hydrolase HDOD NIDE_RS08065 e24b67f63df811a133a8977200a5bdf9 285 PANTHER PTHR33525 16 285 2.7E-49 T 23-04-2016 NIDE_RS08065 e24b67f63df811a133a8977200a5bdf9 285 SUPERFAMILY SSF109604 5 274 1.07E-60 T 23-04-2016 NIDE_RS08065 e24b67f63df811a133a8977200a5bdf9 285 Pfam PF08668 HDOD domain 16 206 5.3E-56 T 23-04-2016 IPR013976 Metal-dependent hydrolase HDOD NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 PANTHER PTHR11735 1 333 2.6E-132 T 23-04-2016 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 SUPERFAMILY SSF53067 1 310 3.45E-38 T 23-04-2016 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 2.6E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 2.6E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 2.6E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 265 274 2.6E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 2.6E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 2.6E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 315 4.1E-124 T 23-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 333 58.176 T 23-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 Gene3D G3DSA:3.30.420.40 1 159 2.4E-45 T 23-04-2016 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 Pfam PF00814 Glycoprotease family 23 308 1.3E-92 T 23-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 PANTHER PTHR11735:SF6 1 333 2.6E-132 T 23-04-2016 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 23-04-2016 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS11265 0e9f2df0c08ebc0b30c1d5ce6248e9ea 346 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 308 9.0E-102 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 417 434 8.06E-8 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 434 454 8.06E-8 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 PANTHER PTHR32071:SF18 1 459 3.6E-205 T 23-04-2016 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 SMART SM00448 6 117 2.0E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 SUPERFAMILY SSF52172 8 190 6.83E-46 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 PANTHER PTHR32071 1 459 3.6E-205 T 23-04-2016 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 SUPERFAMILY SSF52540 146 388 5.19E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 Pfam PF00072 Response regulator receiver domain 8 117 5.8E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 SMART SM00382 166 309 1.2E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 Pfam PF02954 Bacterial regulatory protein, Fis family 411 450 2.1E-14 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 Pfam PF00158 Sigma-54 interaction domain 146 312 6.8E-72 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 Gene3D G3DSA:3.40.50.2300 8 138 1.5E-38 T 23-04-2016 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 SUPERFAMILY SSF46689 359 450 6.15E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 Gene3D G3DSA:1.10.8.60 319 393 2.2E-28 T 23-04-2016 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 Gene3D G3DSA:1.10.10.60 408 450 2.8E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS17960 0b9b1932070bab56336496e1c87246b6 459 Gene3D G3DSA:3.40.50.300 142 318 3.2E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18130 9c2db742fcc2cc59eb893f7defa2116d 367 SUPERFAMILY SSF52467 9 361 6.87E-75 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS18130 9c2db742fcc2cc59eb893f7defa2116d 367 Pfam PF01916 Deoxyhypusine synthase 30 354 2.1E-68 T 23-04-2016 IPR002773 Deoxyhypusine synthase GO:0008612 UniPathway: UPA00354 NIDE_RS18130 9c2db742fcc2cc59eb893f7defa2116d 367 Gene3D G3DSA:3.40.910.10 17 363 9.2E-72 T 23-04-2016 IPR002773 Deoxyhypusine synthase GO:0008612 UniPathway: UPA00354 NIDE_RS18130 9c2db742fcc2cc59eb893f7defa2116d 367 PANTHER PTHR11703 229 361 2.3E-43 T 23-04-2016 IPR002773 Deoxyhypusine synthase GO:0008612 UniPathway: UPA00354 NIDE_RS18130 9c2db742fcc2cc59eb893f7defa2116d 367 PANTHER PTHR11703 27 211 2.3E-43 T 23-04-2016 IPR002773 Deoxyhypusine synthase GO:0008612 UniPathway: UPA00354 NIDE_RS18130 9c2db742fcc2cc59eb893f7defa2116d 367 PANTHER PTHR11703:SF3 229 361 2.3E-43 T 23-04-2016 NIDE_RS18130 9c2db742fcc2cc59eb893f7defa2116d 367 PANTHER PTHR11703:SF3 27 211 2.3E-43 T 23-04-2016 NIDE_RS13850 83afc0fb0acebed3fc9ecc50bf655deb 347 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 70 315 4.4E-45 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 NIDE_RS13850 83afc0fb0acebed3fc9ecc50bf655deb 347 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 5 338 2.9E-47 T 23-04-2016 IPR011910 Lipopolysaccharide heptosyltransferase II GO:0009103|GO:0016757 KEGG: 00231+2.-.-.-|UniPathway: UPA00958 NIDE_RS13850 83afc0fb0acebed3fc9ecc50bf655deb 347 SUPERFAMILY SSF53756 4 340 2.67E-93 T 23-04-2016 NIDE_RS13850 83afc0fb0acebed3fc9ecc50bf655deb 347 Gene3D G3DSA:3.40.50.2000 176 340 4.5E-55 T 23-04-2016 NIDE_RS13850 83afc0fb0acebed3fc9ecc50bf655deb 347 PANTHER PTHR30160:SF1 4 347 2.5E-68 T 23-04-2016 NIDE_RS13850 83afc0fb0acebed3fc9ecc50bf655deb 347 Gene3D G3DSA:3.40.50.2000 4 148 1.0E-39 T 23-04-2016 NIDE_RS13850 83afc0fb0acebed3fc9ecc50bf655deb 347 PANTHER PTHR30160 4 347 2.5E-68 T 23-04-2016 NIDE_RS13850 83afc0fb0acebed3fc9ecc50bf655deb 347 TIGRFAM TIGR02201 heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III 6 338 9.6E-57 T 23-04-2016 IPR011916 Lipopolysaccharide heptosyltransferase III, putative KEGG: 00231+2.-.-.-|UniPathway: UPA00958 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SUPERFAMILY SSF55785 143 254 5.68E-22 T 23-04-2016 IPR000014 PAS domain NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Gene3D G3DSA:1.10.287.130 430 496 1.6E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Gene3D G3DSA:3.30.450.40 253 429 3.7E-17 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SUPERFAMILY SSF47384 424 497 2.16E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 PRINTS PR00344 Bacterial sensor protein C-terminal signature 648 661 7.7E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 PRINTS PR00344 Bacterial sensor protein C-terminal signature 593 607 7.7E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 PRINTS PR00344 Bacterial sensor protein C-terminal signature 624 642 7.7E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 PRINTS PR00344 Bacterial sensor protein C-terminal signature 611 621 7.7E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SUPERFAMILY SSF55874 490 666 1.96E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 PANTHER PTHR24423:SF458 1 21 9.0E-147 T 23-04-2016 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 PANTHER PTHR24423:SF458 418 802 9.0E-147 T 23-04-2016 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 PANTHER PTHR24423:SF458 118 249 9.0E-147 T 23-04-2016 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Pfam PF00072 Response regulator receiver domain 686 797 1.8E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Pfam PF00072 Response regulator receiver domain 3 105 1.7E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SUPERFAMILY SSF55781 273 430 3.93E-15 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Pfam PF13185 GAF domain 272 417 3.2E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SUPERFAMILY SSF52172 684 802 3.56E-25 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Gene3D G3DSA:3.40.50.2300 682 803 8.6E-30 T 23-04-2016 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Gene3D G3DSA:3.30.450.20 128 252 8.0E-26 T 23-04-2016 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SUPERFAMILY SSF52172 1 138 2.13E-25 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Pfam PF08447 PAS fold 158 243 1.4E-17 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 PANTHER PTHR24423 1 21 9.0E-147 T 23-04-2016 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 PANTHER PTHR24423 418 802 9.0E-147 T 23-04-2016 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 PANTHER PTHR24423 118 249 9.0E-147 T 23-04-2016 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SMART SM00065 273 427 9.1E-5 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SMART SM00091 134 202 0.0024 T 23-04-2016 IPR000014 PAS domain NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SMART SM00086 209 251 4.2E-5 T 23-04-2016 IPR001610 PAC motif NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SMART SM00448 1 116 2.6E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SMART SM00448 684 797 1.5E-17 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 SMART SM00387 541 664 7.6E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 542 661 8.5E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 130 256 2.0E-9 T 23-04-2016 IPR000014 PAS domain NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Gene3D G3DSA:3.40.50.2300 1 127 1.0E-26 T 23-04-2016 NIDE_RS20815 769ec09bf29ae738d65e89e36a432746 809 Gene3D G3DSA:3.30.565.10 501 662 4.4E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 PANTHER PTHR26402:SF151 12 231 6.9E-34 T 23-04-2016 NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 Pfam PF00196 Bacterial regulatory proteins, luxR family 168 220 4.9E-16 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 Gene3D G3DSA:3.40.50.2300 12 131 2.6E-10 T 23-04-2016 NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 SUPERFAMILY SSF46894 158 228 1.87E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 SMART SM00421 165 222 7.1E-22 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 Pfam PF00072 Response regulator receiver domain 14 112 2.0E-5 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 SUPERFAMILY SSF52172 12 131 8.5E-11 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 ProSitePatterns PS00622 LuxR-type HTH domain signature. 182 209 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 Gene3D G3DSA:1.10.10.10 159 227 3.1E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 198 1.4E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 198 210 1.4E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 182 1.4E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06860 e926dc865006f1e70a2d69991e8e4301 249 PANTHER PTHR26402 12 231 6.9E-34 T 23-04-2016 NIDE_RS14065 e54c88215ab78331de242bed2c86e287 224 PANTHER PTHR10954 12 209 2.5E-73 T 23-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 NIDE_RS14065 e54c88215ab78331de242bed2c86e287 224 Hamap MF_00052_B Ribonuclease HII [rnhB]. 27 206 35.248 T 23-04-2016 IPR022898 Ribonuclease HII GO:0004523 NIDE_RS14065 e54c88215ab78331de242bed2c86e287 224 Gene3D G3DSA:3.30.420.10 28 167 1.9E-43 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS14065 e54c88215ab78331de242bed2c86e287 224 PANTHER PTHR10954:SF7 12 209 2.5E-73 T 23-04-2016 NIDE_RS14065 e54c88215ab78331de242bed2c86e287 224 SUPERFAMILY SSF53098 17 210 1.52E-66 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS14065 e54c88215ab78331de242bed2c86e287 224 Pfam PF01351 Ribonuclease HII 29 205 2.8E-35 T 23-04-2016 IPR024567 Ribonuclease HII/HIII domain NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 25 629 3.0E-266 T 23-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 PANTHER PTHR24095 27 629 5.9E-277 T 23-04-2016 NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 30 83 5.5E-22 T 23-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 SUPERFAMILY SSF56801 25 626 2.22E-180 T 23-04-2016 NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 Gene3D G3DSA:3.30.300.30 515 618 2.4E-28 T 23-04-2016 NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 Pfam PF13193 AMP-binding enzyme C-terminal domain 528 606 7.1E-26 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 Pfam PF00501 AMP-binding enzyme 85 519 9.0E-98 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 Gene3D G3DSA:3.40.50.980 81 266 1.7E-43 T 23-04-2016 NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 Gene3D G3DSA:3.40.50.980 267 422 5.5E-32 T 23-04-2016 NIDE_RS07550 c5045ce338c85debe699edc7154cbbc4 629 Gene3D G3DSA:2.30.38.10 437 513 4.9E-9 T 23-04-2016 NIDE_RS18070 c2614f1f707928d91b3454aeae77e7f7 184 PIRSF PIRSF001338 8 169 4.0E-66 T 23-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 NIDE_RS18070 c2614f1f707928d91b3454aeae77e7f7 184 Gene3D G3DSA:3.40.50.7700 7 165 1.5E-70 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 NIDE_RS18070 c2614f1f707928d91b3454aeae77e7f7 184 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 12 163 32.286 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 NIDE_RS18070 c2614f1f707928d91b3454aeae77e7f7 184 PANTHER PTHR23046 9 172 7.8E-79 T 23-04-2016 NIDE_RS18070 c2614f1f707928d91b3454aeae77e7f7 184 PANTHER PTHR23046:SF2 9 172 7.8E-79 T 23-04-2016 NIDE_RS18070 c2614f1f707928d91b3454aeae77e7f7 184 SMART SM01001 10 159 7.8E-92 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 NIDE_RS18070 c2614f1f707928d91b3454aeae77e7f7 184 SUPERFAMILY SSF52255 12 166 4.32E-63 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 NIDE_RS18070 c2614f1f707928d91b3454aeae77e7f7 184 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 12 165 1.2E-64 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 NIDE_RS18070 c2614f1f707928d91b3454aeae77e7f7 184 Pfam PF00731 AIR carboxylase 12 157 3.0E-63 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 PIRSF PIRSF006769 1 365 2.6E-127 T 23-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 1 357 2.7E-110 T 23-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 PANTHER PTHR11079:SF10 1 220 2.3E-59 T 23-04-2016 NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 Gene3D G3DSA:3.40.430.10 123 359 1.6E-75 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 SUPERFAMILY SSF53597 139 358 3.39E-57 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 Gene3D G3DSA:3.40.140.10 1 122 1.5E-26 T 23-04-2016 NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 1 95 1.5E-16 T 23-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 PANTHER PTHR11079 1 220 2.3E-59 T 23-04-2016 NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 SUPERFAMILY SSF53927 1 139 9.03E-39 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 141 360 1.5E-62 T 23-04-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 NIDE_RS07515 7655b90ffd4c5dec7412c2aeb61ba698 365 Pfam PF01872 RibD C-terminal domain 142 357 8.7E-53 T 23-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 PANTHER PTHR30203 4 476 4.5E-104 T 23-04-2016 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 PANTHER PTHR30203:SF3 4 476 4.5E-104 T 23-04-2016 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 Gene3D G3DSA:1.20.1600.10 135 306 4.1E-109 T 23-04-2016 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 Gene3D G3DSA:1.20.1600.10 344 458 4.1E-109 T 23-04-2016 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 Gene3D G3DSA:1.20.1600.10 48 85 4.1E-109 T 23-04-2016 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 8 457 1.4E-107 T 23-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 Pfam PF02321 Outer membrane efflux protein 59 247 1.9E-27 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 Pfam PF02321 Outer membrane efflux protein 274 455 7.5E-23 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 Gene3D G3DSA:2.20.200.10 307 341 4.4E-8 T 23-04-2016 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 Gene3D G3DSA:2.20.200.10 123 134 4.4E-8 T 23-04-2016 NIDE_RS15890 a72984f6af99450e0d382d3ed3fd704d 477 SUPERFAMILY SSF56954 1 460 3.01E-107 T 23-04-2016 NIDE_RS10795 43f9b1cd0b4d5550f5b4ec46e3ff0942 561 Pfam PF11845 Protein of unknown function (DUF3365) 22 220 8.4E-22 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS10795 43f9b1cd0b4d5550f5b4ec46e3ff0942 561 SMART SM00304 230 284 3.7E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS10795 43f9b1cd0b4d5550f5b4ec46e3ff0942 561 PANTHER PTHR32089 184 561 1.6E-139 T 23-04-2016 NIDE_RS10795 43f9b1cd0b4d5550f5b4ec46e3ff0942 561 SUPERFAMILY SSF58104 252 561 9.68E-89 T 23-04-2016 NIDE_RS10795 43f9b1cd0b4d5550f5b4ec46e3ff0942 561 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 347 559 1.4E-60 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 NIDE_RS10795 43f9b1cd0b4d5550f5b4ec46e3ff0942 561 SMART SM00283 299 560 2.3E-99 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 NIDE_RS10795 43f9b1cd0b4d5550f5b4ec46e3ff0942 561 Gene3D G3DSA:1.10.287.950 316 530 8.3E-63 T 23-04-2016 NIDE_RS10795 43f9b1cd0b4d5550f5b4ec46e3ff0942 561 Pfam PF00672 HAMP domain 211 281 1.6E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS08005 c6f98d05c40b85743833d0867725e63c 254 SUPERFAMILY SSF56214 127 246 1.83E-25 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 NIDE_RS08005 c6f98d05c40b85743833d0867725e63c 254 SUPERFAMILY SSF56214 22 119 2.22E-23 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 NIDE_RS08005 c6f98d05c40b85743833d0867725e63c 254 PANTHER PTHR12215 13 204 1.9E-49 T 23-04-2016 NIDE_RS08005 c6f98d05c40b85743833d0867725e63c 254 Gene3D G3DSA:3.90.470.20 140 235 6.2E-23 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 NIDE_RS08005 c6f98d05c40b85743833d0867725e63c 254 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 128 230 2.3E-16 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 NIDE_RS08005 c6f98d05c40b85743833d0867725e63c 254 Gene3D G3DSA:3.90.470.20 22 139 6.6E-33 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 602 618 5.8E-53 T 23-04-2016 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 733 751 5.8E-53 T 23-04-2016 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 359 378 5.8E-53 T 23-04-2016 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 680 699 5.8E-53 T 23-04-2016 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 710 729 5.8E-53 T 23-04-2016 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 PANTHER PTHR10046 12 773 0.0 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 Gene3D G3DSA:1.10.8.60 503 591 6.3E-25 T 23-04-2016 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 Gene3D G3DSA:3.40.50.300 311 502 1.4E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 SUPERFAMILY SSF54211 602 773 1.06E-54 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 12 192 1.4E-32 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 PANTHER PTHR10046:SF24 12 773 0.0 T 23-04-2016 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 SUPERFAMILY SSF88697 11 203 1.27E-38 T 23-04-2016 IPR015947 PUA-like domain NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 577 773 2.3E-84 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 SUPERFAMILY SSF52540 310 565 6.96E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 SMART SM00382 351 496 1.8E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 Gene3D G3DSA:3.30.230.10 597 773 1.1E-70 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 683 691 - T 23-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 TIGRFAM TIGR00763 lon: endopeptidase La 13 773 1.1E-273 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 355 492 2.5E-20 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 SMART SM00464 11 205 1.4E-41 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 PIRSF PIRSF001174 1 773 7.3E-281 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 NIDE_RS08655 693553788a72cc9cf90b1189d99f92ac 773 Hamap MF_01973 Lon protease [lon]. 12 773 63.621 T 23-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 NIDE_RS13810 0110bec0d5ffe97d4a994697fa716a86 342 SUPERFAMILY SSF51735 1 330 8.86E-97 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13810 0110bec0d5ffe97d4a994697fa716a86 342 Gene3D G3DSA:3.90.25.10 180 327 4.4E-50 T 23-04-2016 NIDE_RS13810 0110bec0d5ffe97d4a994697fa716a86 342 Gene3D G3DSA:3.40.50.720 1 179 6.9E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13810 0110bec0d5ffe97d4a994697fa716a86 342 PANTHER PTHR10366 2 330 1.3E-152 T 23-04-2016 NIDE_RS13810 0110bec0d5ffe97d4a994697fa716a86 342 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 317 1.9E-130 T 23-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 NIDE_RS13810 0110bec0d5ffe97d4a994697fa716a86 342 PANTHER PTHR10366:SF41 2 330 1.3E-152 T 23-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 NIDE_RS13810 0110bec0d5ffe97d4a994697fa716a86 342 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 303 1.6E-80 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04575 5f6120cc9050143e743e73334e744d8b 467 SUPERFAMILY SSF56935 274 465 2.62E-15 T 23-04-2016 NIDE_RS04575 5f6120cc9050143e743e73334e744d8b 467 SUPERFAMILY SSF56935 89 243 2.62E-15 T 23-04-2016 NIDE_RS04575 5f6120cc9050143e743e73334e744d8b 467 Gene3D G3DSA:2.40.160.10 89 462 4.3E-19 T 23-04-2016 IPR023614 Porin domain NIDE_RS17650 7d9da196b0aca66cd9dab0329e7037ce 158 Pfam PF01322 Cytochrome C' 109 154 1.1E-5 T 23-04-2016 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 NIDE_RS17650 7d9da196b0aca66cd9dab0329e7037ce 158 Gene3D G3DSA:1.20.120.10 110 154 3.3E-7 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 NIDE_RS17650 7d9da196b0aca66cd9dab0329e7037ce 158 SUPERFAMILY SSF47175 48 154 2.21E-12 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 NIDE_RS05355 eddf055106df5dae194ffbb39a4af505 405 SUPERFAMILY SSF53383 9 375 2.1E-106 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS05355 eddf055106df5dae194ffbb39a4af505 405 Gene3D G3DSA:3.90.1150.10 271 378 2.6E-33 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS05355 eddf055106df5dae194ffbb39a4af505 405 Pfam PF00266 Aminotransferase class-V 16 340 9.6E-40 T 23-04-2016 IPR000192 Aminotransferase class V domain NIDE_RS05355 eddf055106df5dae194ffbb39a4af505 405 PIRSF PIRSF000524 9 400 7.9E-118 T 23-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 NIDE_RS05355 eddf055106df5dae194ffbb39a4af505 405 Gene3D G3DSA:3.40.640.10 26 270 1.4E-65 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS05355 eddf055106df5dae194ffbb39a4af505 405 PANTHER PTHR21152 6 394 4.2E-129 T 23-04-2016 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 Gene3D G3DSA:3.30.860.10 1 89 1.6E-41 T 23-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 PANTHER PTHR11880 1 87 6.0E-51 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 87 5.3E-46 T 23-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 Pfam PF00203 Ribosomal protein S19 3 83 1.2E-37 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 PIRSF PIRSF002144 1 95 7.6E-34 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 23-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.811 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 SUPERFAMILY SSF54570 3 84 1.14E-35 T 23-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.6E-24 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.6E-24 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06090 24ae73b7dfa465e04e9a9b92c972deed 95 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.6E-24 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 NIDE_RS02405 7762f9338a3a724d5b6bf4b04d1d197b 252 SMART SM00849 18 205 3.4E-4 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS02405 7762f9338a3a724d5b6bf4b04d1d197b 252 PANTHER PTHR12553 2 250 4.7E-27 T 23-04-2016 NIDE_RS02405 7762f9338a3a724d5b6bf4b04d1d197b 252 Pfam PF12706 Beta-lactamase superfamily domain 48 220 2.1E-18 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS02405 7762f9338a3a724d5b6bf4b04d1d197b 252 SUPERFAMILY SSF56281 3 249 3.41E-44 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS02405 7762f9338a3a724d5b6bf4b04d1d197b 252 Gene3D G3DSA:3.60.15.10 1 250 2.1E-45 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 257 272 - T 23-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 5 468 3.5E-206 T 23-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 SMART SM01230 102 378 8.2E-153 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 PANTHER PTHR20852 156 469 4.0E-252 T 23-04-2016 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 PANTHER PTHR20852 1 138 4.0E-252 T 23-04-2016 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 SUPERFAMILY SSF55931 102 468 1.37E-139 T 23-04-2016 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 1.2E-26 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 23-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 SUPERFAMILY SSF54368 3 101 1.18E-31 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 465 3.4E-137 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 Gene3D G3DSA:3.30.590.10 106 448 9.4E-139 T 23-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 PANTHER PTHR20852:SF15 156 469 4.0E-252 T 23-04-2016 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 PANTHER PTHR20852:SF15 1 138 4.0E-252 T 23-04-2016 NIDE_RS06315 fbd81669002b297296f0037a0789385f 469 Gene3D G3DSA:3.10.20.70 4 105 3.3E-34 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 NIDE_RS09860 01daf9f19c4d5d7d6f43641a75bf0306 795 PIRSF PIRSF001227 5 790 1.3E-185 T 23-04-2016 IPR014395 Penicillin acylase GO:0016811 NIDE_RS09860 01daf9f19c4d5d7d6f43641a75bf0306 795 Gene3D G3DSA:3.60.20.10 260 335 6.1E-88 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS09860 01daf9f19c4d5d7d6f43641a75bf0306 795 Gene3D G3DSA:3.60.20.10 410 616 6.1E-88 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS09860 01daf9f19c4d5d7d6f43641a75bf0306 795 SUPERFAMILY SSF56235 41 787 7.72E-189 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS09860 01daf9f19c4d5d7d6f43641a75bf0306 795 PANTHER PTHR34218 1 790 8.7E-169 T 23-04-2016 NIDE_RS09860 01daf9f19c4d5d7d6f43641a75bf0306 795 PANTHER PTHR34218:SF2 1 790 8.7E-169 T 23-04-2016 NIDE_RS09860 01daf9f19c4d5d7d6f43641a75bf0306 795 Pfam PF01804 Penicillin amidase 45 776 4.0E-170 T 23-04-2016 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 NIDE_RS09860 01daf9f19c4d5d7d6f43641a75bf0306 795 Gene3D G3DSA:2.30.120.10 336 401 5.6E-15 T 23-04-2016 NIDE_RS09860 01daf9f19c4d5d7d6f43641a75bf0306 795 Gene3D G3DSA:1.10.439.10 30 198 5.1E-49 T 23-04-2016 IPR023343 Penicillin amidase type, domain1 GO:0016811 NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 Gene3D G3DSA:3.40.1190.20 2 297 2.4E-96 T 23-04-2016 IPR029056 Ribokinase-like NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 PRINTS PR00990 Ribokinase signature 31 50 5.9E-34 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 PRINTS PR00990 Ribokinase signature 171 186 5.9E-34 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 PRINTS PR00990 Ribokinase signature 4 25 5.9E-34 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 PRINTS PR00990 Ribokinase signature 103 116 5.9E-34 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 PRINTS PR00990 Ribokinase signature 210 221 5.9E-34 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 2 293 2.7E-94 T 23-04-2016 IPR011877 Ribokinase, bacterial type GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|UniPathway: UPA00916 NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 239 252 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 PANTHER PTHR10584:SF184 2 294 1.9E-95 T 23-04-2016 NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 SUPERFAMILY SSF53613 2 294 6.24E-82 T 23-04-2016 IPR029056 Ribokinase-like NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 PANTHER PTHR10584 2 294 1.9E-95 T 23-04-2016 NIDE_RS01445 119115f4455a8dbdf24db5a14433dc7e 308 Pfam PF00294 pfkB family carbohydrate kinase 2 287 9.9E-63 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 SUPERFAMILY SSF52540 611 910 6.15E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:3.40.50.300 818 939 2.1E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:3.40.50.300 611 689 2.1E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:3.40.50.300 477 595 3.4E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:3.40.50.300 19 72 3.4E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:3.30.1490.20 221 267 4.5E-11 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:3.30.1490.20 159 174 4.5E-11 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 25 922 0.0 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 PANTHER PTHR32282:SF2 21 944 0.0 T 23-04-2016 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 PANTHER PTHR32282 21 944 0.0 T 23-04-2016 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:1.20.1580.10 691 817 2.7E-44 T 23-04-2016 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 SUPERFAMILY SSF52540 429 568 8.78E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:1.20.1580.10 406 476 1.0E-46 T 23-04-2016 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:1.20.1580.10 113 150 1.0E-46 T 23-04-2016 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:1.20.1580.10 269 302 1.0E-46 T 23-04-2016 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 SUPERFAMILY SSF52540 32 225 8.78E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 Gene3D G3DSA:1.10.8.280 305 405 7.7E-19 T 23-04-2016 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 ProSitePatterns PS00211 ABC transporters family signature. 827 841 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS14705 78770c5ddf556a8adede5e7e895c0c03 952 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF56801 2213 2770 1.44E-163 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 PANTHER PTHR24095 679 1053 0.0 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.40.50.980 13 180 8.8E-30 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.40.50.980 2248 2402 2.1E-51 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.40.50.980 1171 1325 2.3E-58 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:1.10.1200.10 602 679 1.8E-12 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 ProSitePatterns PS00012 Phosphopantetheine attachment site. 636 651 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 PANTHER PTHR24095:SF137 679 1053 0.0 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.40.50.980 2403 2559 2.5E-34 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.40.50.980 1326 1494 7.4E-42 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.40.50.980 181 342 2.5E-33 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF52777 704 879 2.45E-35 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF00975 Thioesterase domain 2845 2937 4.4E-20 T 23-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:2.30.38.10 1495 1574 7.1E-27 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:2.30.38.10 2560 2635 6.9E-27 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 PANTHER PTHR24095:SF137 1079 2729 0.0 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF52777 1979 2240 2.11E-57 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF47336 2750 2823 1.44E-19 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1198 1609 1.8E-141 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2275 2670 1.1E-129 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF13745 HxxPF-repeated domain 1020 1123 1.8E-18 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF13745 HxxPF-repeated domain 2111 2200 8.0E-22 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF00668 Condensation domain 1790 2089 8.5E-71 T 23-04-2016 IPR001242 Condensation domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF00668 Condensation domain 699 996 2.3E-60 T 23-04-2016 IPR001242 Condensation domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:2.30.38.10 378 456 4.4E-17 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 ProSitePatterns PS00455 Putative AMP-binding domain signature. 174 185 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1723 1738 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF00550 Phosphopantetheine attachment site 2759 2821 3.5E-14 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF00550 Phosphopantetheine attachment site 1701 1764 4.4E-13 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF00550 Phosphopantetheine attachment site 612 677 2.7E-11 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF52777 890 1140 5.78E-51 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 PANTHER PTHR24095 1079 2729 0.0 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF00501 AMP-binding enzyme 1178 1585 2.9E-98 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF00501 AMP-binding enzyme 20 467 4.0E-76 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF00501 AMP-binding enzyme 2254 2646 4.2E-99 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1319 1330 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF47336 1692 1764 8.77E-21 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF47336 603 697 2.88E-14 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SMART SM00823 Phosphopantetheine attachment site 1699 1768 4.9E-5 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SMART SM00823 Phosphopantetheine attachment site 610 681 9.3E-4 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SMART SM00823 Phosphopantetheine attachment site 2757 2826 9.0E-9 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF13193 AMP-binding enzyme C-terminal domain 1593 1668 6.3E-10 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Pfam PF13193 AMP-binding enzyme C-terminal domain 2654 2729 2.2E-12 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF53474 2826 3096 2.46E-43 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2396 2407 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF56801 1135 1712 1.44E-159 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF56801 10 574 3.79E-106 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.30.300.30 2642 2761 7.6E-43 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.30.300.30 1581 1703 8.0E-38 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:1.10.1200.10 2762 2824 5.7E-25 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:1.10.1200.10 1704 1770 1.8E-29 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.30.300.30 458 566 3.2E-14 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 SUPERFAMILY SSF52777 1793 1971 2.45E-48 T 23-04-2016 NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.40.50.1820 3028 3098 1.0E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS07995 269b763664f732f0f7f6978992f40087 3120 Gene3D G3DSA:3.40.50.1820 2831 2947 1.0E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 SUPERFAMILY SSF55073 165 319 2.55E-50 T 23-04-2016 IPR029787 Nucleotide cyclase NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 SMART SM00448 1 122 2.2E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 Pfam PF00990 Diguanylate cyclase, GGDEF domain 162 318 1.3E-51 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 Gene3D G3DSA:3.30.70.270 163 319 1.0E-55 T 23-04-2016 NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 Pfam PF00072 Response regulator receiver domain 3 122 2.0E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 Gene3D G3DSA:3.40.50.2300 3 144 1.4E-34 T 23-04-2016 NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 PANTHER PTHR26402 174 189 1.4E-34 T 23-04-2016 NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 PANTHER PTHR26402 1 140 1.4E-34 T 23-04-2016 NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 SUPERFAMILY SSF52172 2 148 1.2E-33 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 SMART SM00267 149 322 8.2E-70 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS05675 10dab24c0bd297c47ccbca456c280dd5 334 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 158 320 1.9E-53 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS07250 f0b247e8c27b47751968dabb24ce532f 354 SUPERFAMILY SSF102114 14 285 2.22E-66 T 23-04-2016 NIDE_RS07250 f0b247e8c27b47751968dabb24ce532f 354 Pfam PF06463 Molybdenum Cofactor Synthesis C 194 317 2.1E-33 T 23-04-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS07250 f0b247e8c27b47751968dabb24ce532f 354 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 14 323 2.9E-104 T 23-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS07250 f0b247e8c27b47751968dabb24ce532f 354 Pfam PF13394 4Fe-4S single cluster domain 29 116 1.4E-7 T 23-04-2016 NIDE_RS07250 f0b247e8c27b47751968dabb24ce532f 354 PANTHER PTHR22960 11 291 1.6E-111 T 23-04-2016 NIDE_RS07250 f0b247e8c27b47751968dabb24ce532f 354 Pfam PF04055 Radical SAM superfamily 27 186 5.0E-27 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS07250 f0b247e8c27b47751968dabb24ce532f 354 Gene3D G3DSA:3.20.20.70 14 307 8.3E-71 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS07250 f0b247e8c27b47751968dabb24ce532f 354 SMART SM00729 22 223 2.0E-6 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS07250 f0b247e8c27b47751968dabb24ce532f 354 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 13 354 38.395 T 23-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS07250 f0b247e8c27b47751968dabb24ce532f 354 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 28 39 - T 23-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 PANTHER PTHR32063:SF14 1 1007 0.0 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 PANTHER PTHR32063 1 1007 0.0 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 SUPERFAMILY SSF82693 42 133 1.31E-21 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 8.1E-61 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 8.1E-61 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 8.1E-61 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 8.1E-61 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 8.1E-61 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 PRINTS PR00702 Acriflavin resistance protein family signature 602 616 8.1E-61 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 8.1E-61 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 8.1E-61 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 Gene3D G3DSA:3.30.70.1430 43 137 1.4E-23 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 SUPERFAMILY SSF82693 269 325 3.14E-17 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 SUPERFAMILY SSF82693 141 183 3.14E-17 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 SUPERFAMILY SSF82866 291 490 1.7E-44 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 Gene3D G3DSA:3.30.2090.10 185 269 7.2E-22 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 SUPERFAMILY SSF82714 185 267 4.05E-19 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 SUPERFAMILY SSF82866 781 1005 1.1E-35 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 Gene3D G3DSA:3.30.2090.10 697 782 1.9E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 Gene3D G3DSA:1.10.3850.10 789 1003 1.2E-49 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 Gene3D G3DSA:1.10.3850.10 275 492 1.2E-50 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 SUPERFAMILY SSF82693 555 648 3.82E-8 T 23-04-2016 NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 SUPERFAMILY SSF82714 697 781 6.15E-15 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS15985 64cd930ccb222162b92847f260e722a1 1027 Pfam PF00873 AcrB/AcrD/AcrF family 5 1002 7.6E-242 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Pfam PF00668 Condensation domain 1096 1397 2.4E-70 T 23-04-2016 IPR001242 Condensation domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Pfam PF00668 Condensation domain 23 324 7.5E-68 T 23-04-2016 IPR001242 Condensation domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Pfam PF00668 Condensation domain 2153 2452 5.1E-60 T 23-04-2016 IPR001242 Condensation domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SMART SM00823 Phosphopantetheine attachment site 2070 2138 0.0075 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SMART SM00823 Phosphopantetheine attachment site 1010 1079 1.1E-8 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Pfam PF13745 HxxPF-repeated domain 1419 1509 5.1E-34 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Gene3D G3DSA:1.10.1200.10 1016 1080 3.9E-29 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Gene3D G3DSA:1.10.1200.10 2074 2135 8.9E-26 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SUPERFAMILY SSF47336 2062 2134 2.22E-17 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SUPERFAMILY SSF56801 1523 2083 1.26E-165 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Pfam PF00501 AMP-binding enzyme 488 900 5.9E-87 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Pfam PF00501 AMP-binding enzyme 1564 1960 2.0E-98 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 PANTHER PTHR24095 21 2043 0.0 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SUPERFAMILY SSF52777 206 456 2.78E-58 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Gene3D G3DSA:3.40.50.980 1723 1870 4.3E-47 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Gene3D G3DSA:3.40.50.980 1558 1720 1.5E-44 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 2459 2613 1.3E-43 T 23-04-2016 IPR010060 Non-ribosomal peptide synthase NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SUPERFAMILY SSF56801 448 1023 4.06E-156 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Gene3D G3DSA:3.40.50.980 482 645 2.4E-44 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SUPERFAMILY SSF52777 1101 1278 2.56E-47 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SUPERFAMILY SSF52777 2158 2332 1.05E-34 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1703 1714 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 ProSitePatterns PS00455 Putative AMP-binding domain signature. 636 647 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Pfam PF13193 AMP-binding enzyme C-terminal domain 908 983 7.4E-14 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Pfam PF13193 AMP-binding enzyme C-terminal domain 1968 2043 1.6E-9 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Gene3D G3DSA:3.30.300.30 895 1015 4.9E-45 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Gene3D G3DSA:3.30.300.30 1955 2073 5.2E-41 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SUPERFAMILY SSF47336 1002 1111 3.53E-24 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1034 1049 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2094 2109 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Gene3D G3DSA:3.40.50.980 646 810 5.7E-41 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SUPERFAMILY SSF52777 28 205 9.34E-46 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Pfam PF00550 Phosphopantetheine attachment site 2071 2133 4.9E-11 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Pfam PF00550 Phosphopantetheine attachment site 1012 1074 2.6E-16 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SUPERFAMILY SSF52777 1286 1548 4.56E-66 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 SUPERFAMILY SSF52777 2342 2589 2.33E-44 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 PANTHER PTHR24095:SF173 21 2043 0.0 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 509 924 1.1E-122 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1583 1984 1.1E-139 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Gene3D G3DSA:2.30.38.10 1871 1950 4.6E-29 T 23-04-2016 NIDE_RS09885 04204f45404c2976c6e3ea62428d72f1 2623 Gene3D G3DSA:2.30.38.10 811 890 1.4E-23 T 23-04-2016 NIDE_RS18325 19a7c704a289506225086d055f08337d 232 SUPERFAMILY SSF63380 11 106 4.86E-23 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 NIDE_RS18325 19a7c704a289506225086d055f08337d 232 Gene3D G3DSA:3.40.50.80 93 226 8.7E-19 T 23-04-2016 NIDE_RS18325 19a7c704a289506225086d055f08337d 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 97 106 2.6E-7 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS18325 19a7c704a289506225086d055f08337d 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 34 46 2.6E-7 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS18325 19a7c704a289506225086d055f08337d 232 PRINTS PR00410 Phenol hydroxylase reductase family signature 113 132 2.6E-7 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS18325 19a7c704a289506225086d055f08337d 232 Pfam PF00970 Oxidoreductase FAD-binding domain 21 102 4.3E-14 T 23-04-2016 IPR008333 Oxidoreductase, FAD-binding domain NIDE_RS18325 19a7c704a289506225086d055f08337d 232 Gene3D G3DSA:2.40.30.10 10 92 6.2E-21 T 23-04-2016 NIDE_RS18325 19a7c704a289506225086d055f08337d 232 SUPERFAMILY SSF52343 91 227 2.49E-19 T 23-04-2016 NIDE_RS18325 19a7c704a289506225086d055f08337d 232 PANTHER PTHR19370 11 229 6.2E-28 T 23-04-2016 NIDE_RS01670 a4d2507131396df147477b62c6753ee5 258 PANTHER PTHR13696 1 258 2.1E-89 T 23-04-2016 NIDE_RS01670 a4d2507131396df147477b62c6753ee5 258 PANTHER PTHR13696:SF52 1 258 2.1E-89 T 23-04-2016 NIDE_RS01670 a4d2507131396df147477b62c6753ee5 258 Gene3D G3DSA:3.40.50.300 3 251 1.5E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01670 a4d2507131396df147477b62c6753ee5 258 SUPERFAMILY SSF52540 1 250 2.55E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01670 a4d2507131396df147477b62c6753ee5 258 Pfam PF13614 AAA domain 3 178 7.7E-65 T 23-04-2016 IPR025669 AAA domain NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 SMART SM01004 3 322 1.6E-240 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 241 253 - T 23-04-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 Gene3D G3DSA:3.20.20.70 3 323 7.9E-155 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 SUPERFAMILY SSF51569 2 323 2.05E-144 T 23-04-2016 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 Pfam PF00490 Delta-aminolevulinic acid dehydratase 6 319 4.0E-154 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 PIRSF PIRSF001415 1 325 1.1E-154 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 296 315 2.0E-60 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 151 170 2.0E-60 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 121 135 2.0E-60 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 266 281 2.0E-60 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 189 208 2.0E-60 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 241 257 2.0E-60 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12575 540bec3e99e6e4999a9b995b0dfd6f3e 327 PANTHER PTHR11458 3 323 9.9E-195 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS06095 9a6b57fc90cd642a8f0fe0d7268e355d 117 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 6 108 1.1E-38 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 NIDE_RS06095 9a6b57fc90cd642a8f0fe0d7268e355d 117 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 2 111 26.196 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 NIDE_RS06095 9a6b57fc90cd642a8f0fe0d7268e355d 117 Pfam PF00237 Ribosomal protein L22p/L17e 9 108 6.2E-29 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06095 9a6b57fc90cd642a8f0fe0d7268e355d 117 PANTHER PTHR13501 3 108 9.5E-33 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 NIDE_RS06095 9a6b57fc90cd642a8f0fe0d7268e355d 117 SUPERFAMILY SSF54843 3 109 2.09E-35 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06095 9a6b57fc90cd642a8f0fe0d7268e355d 117 ProSitePatterns PS00464 Ribosomal protein L22 signature. 84 108 - T 23-04-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06095 9a6b57fc90cd642a8f0fe0d7268e355d 117 Gene3D G3DSA:3.90.470.10 3 109 3.0E-36 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 NIDE_RS14035 1240a6697f02682cbc698734c705221e 149 Gene3D G3DSA:1.10.8.310 1 71 7.2E-19 T 23-04-2016 IPR027420 DNA polymerase beta, N-terminal domain NIDE_RS14035 1240a6697f02682cbc698734c705221e 149 Pfam PF14716 Helix-hairpin-helix domain 1 59 1.2E-15 T 23-04-2016 IPR010996 DNA polymerase beta-like, N-terminal domain NIDE_RS14035 1240a6697f02682cbc698734c705221e 149 SUPERFAMILY SSF47802 1 71 1.12E-15 T 23-04-2016 IPR010996 DNA polymerase beta-like, N-terminal domain NIDE_RS14035 1240a6697f02682cbc698734c705221e 149 PANTHER PTHR11276 1 109 1.1E-15 T 23-04-2016 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 454 465 - T 23-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 SUPERFAMILY SSF56059 3 383 2.0E-132 T 23-04-2016 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Pfam PF00391 PEP-utilising enzyme, mobile domain 427 506 1.2E-25 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 PIRSF PIRSF000853 2 904 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Gene3D G3DSA:3.50.30.10 407 509 8.4E-36 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 537 894 1.1E-91 T 23-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Gene3D G3DSA:3.30.470.20 248 345 1.4E-36 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 PANTHER PTHR22931 2 649 0.0 T 23-04-2016 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 PANTHER PTHR22931 669 904 0.0 T 23-04-2016 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 SUPERFAMILY SSF52009 394 512 2.62E-31 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Gene3D G3DSA:1.10.189.10 346 406 1.1E-24 T 23-04-2016 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Gene3D G3DSA:3.20.20.60 550 898 8.9E-136 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Gene3D G3DSA:3.30.1490.20 204 247 1.7E-54 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Gene3D G3DSA:3.30.1490.20 4 115 1.7E-54 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Gene3D G3DSA:1.20.80.30 116 202 1.4E-31 T 23-04-2016 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 SUPERFAMILY SSF51621 534 896 1.19E-123 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 786 804 - T 23-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 69 292 3.1E-34 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 22 60 4.3E-9 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 306 360 6.8E-10 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 PANTHER PTHR22931:SF9 2 649 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 PANTHER PTHR22931:SF9 669 904 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NIDE_RS07510 5cb47f93e1b8495cdef8cb9169673efe 949 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 3 896 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NIDE_RS03125 2dc448ccab1a4a513f9ed06b9f543f7d 214 SUPERFAMILY SSF52833 44 205 2.87E-23 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS03125 2dc448ccab1a4a513f9ed06b9f543f7d 214 Pfam PF13462 Thioredoxin 52 204 2.8E-11 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS03125 2dc448ccab1a4a513f9ed06b9f543f7d 214 Gene3D G3DSA:3.40.30.10 47 193 1.5E-24 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS17565 8d290b32077b48cc7f937d8052e4b340 324 SMART SM00861 4 179 4.6E-59 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain NIDE_RS17565 8d290b32077b48cc7f937d8052e4b340 324 PANTHER PTHR11624 3 324 3.0E-134 T 23-04-2016 IPR033247 Transketolase family NIDE_RS17565 8d290b32077b48cc7f937d8052e4b340 324 Gene3D G3DSA:3.40.50.970 2 183 1.2E-75 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS17565 8d290b32077b48cc7f937d8052e4b340 324 SUPERFAMILY SSF52922 190 323 2.75E-38 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS17565 8d290b32077b48cc7f937d8052e4b340 324 Pfam PF02780 Transketolase, C-terminal domain 194 315 1.3E-35 T 23-04-2016 IPR033248 Transketolase, C-terminal domain NIDE_RS17565 8d290b32077b48cc7f937d8052e4b340 324 Gene3D G3DSA:3.40.50.920 197 320 4.6E-42 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS17565 8d290b32077b48cc7f937d8052e4b340 324 Pfam PF02779 Transketolase, pyrimidine binding domain 3 178 9.2E-43 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain NIDE_RS17565 8d290b32077b48cc7f937d8052e4b340 324 SUPERFAMILY SSF52518 3 182 1.18E-64 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 Pfam PF01493 GXGXG motif 1262 1449 1.9E-81 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 Pfam PF00310 Glutamine amidotransferases class-II 22 442 8.6E-187 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 SUPERFAMILY SSF51395 457 1219 2.28E-276 T 23-04-2016 NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 Gene3D G3DSA:3.20.20.70 458 802 2.3E-113 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 SUPERFAMILY SSF69336 1231 1495 1.23E-96 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 SUPERFAMILY SSF56235 22 445 1.85E-153 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 Gene3D G3DSA:3.60.20.10 22 453 8.7E-190 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 Pfam PF01645 Conserved region in glutamate synthase 814 1182 3.6E-156 T 23-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 PANTHER PTHR11938:SF1 11 1499 0.0 T 23-04-2016 NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 Gene3D G3DSA:2.160.20.60 1237 1503 2.0E-106 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 PANTHER PTHR11938 11 1499 0.0 T 23-04-2016 NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 Pfam PF04898 Glutamate synthase central domain 469 754 1.4E-118 T 23-04-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 NIDE_RS15475 92c4c35ba8e0e8ede17a990cfc5e1190 1506 Gene3D G3DSA:3.20.20.70 831 1216 3.7E-185 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 Pfam PF02803 Thiolase, C-terminal domain 257 378 6.3E-47 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 ProSitePatterns PS00099 Thiolases active site. 360 373 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 Gene3D G3DSA:3.40.47.10 2 110 1.4E-61 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 Gene3D G3DSA:3.40.47.10 181 262 1.4E-61 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 2 377 2.3E-132 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 SUPERFAMILY SSF53901 258 378 1.5E-41 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 PANTHER PTHR18919 1 378 1.3E-187 T 23-04-2016 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 Pfam PF00108 Thiolase, N-terminal domain 1 249 7.7E-82 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 Gene3D G3DSA:3.40.47.10 129 180 2.2E-61 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 Gene3D G3DSA:3.40.47.10 263 377 2.2E-61 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 ProSitePatterns PS00737 Thiolases signature 2. 325 341 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 PANTHER PTHR18919:SF110 1 378 1.3E-187 T 23-04-2016 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 PIRSF PIRSF000429 1 378 4.4E-111 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 SUPERFAMILY SSF53901 2 256 6.45E-71 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS14280 a3c87f5738f71d7f3fe26233f440af7d 378 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 71 89 - T 23-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 NIDE_RS17325 180b581069bea2dbaae4f8e0ce3c22e2 337 Gene3D G3DSA:3.40.50.150 91 335 3.3E-56 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS17325 180b581069bea2dbaae4f8e0ce3c22e2 337 SUPERFAMILY SSF53335 93 334 4.96E-47 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS17325 180b581069bea2dbaae4f8e0ce3c22e2 337 PANTHER PTHR11746:SF63 7 323 1.6E-66 T 23-04-2016 NIDE_RS17325 180b581069bea2dbaae4f8e0ce3c22e2 337 Gene3D G3DSA:1.10.10.10 4 84 2.0E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS17325 180b581069bea2dbaae4f8e0ce3c22e2 337 Pfam PF16864 Dimerisation domain 11 91 1.9E-15 T 23-04-2016 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain NIDE_RS17325 180b581069bea2dbaae4f8e0ce3c22e2 337 PIRSF PIRSF005739 3 337 1.9E-31 T 23-04-2016 IPR016461 O-methyltransferase COMT-type GO:0008168 NIDE_RS17325 180b581069bea2dbaae4f8e0ce3c22e2 337 Pfam PF00891 O-methyltransferase 102 323 7.5E-36 T 23-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 NIDE_RS17325 180b581069bea2dbaae4f8e0ce3c22e2 337 SUPERFAMILY SSF46785 9 87 4.09E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS17325 180b581069bea2dbaae4f8e0ce3c22e2 337 PANTHER PTHR11746 7 323 1.6E-66 T 23-04-2016 NIDE_RS18620 75da7462efbb63ed98544de4b979715d 726 PANTHER PTHR11533 175 460 1.7E-20 T 23-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 NIDE_RS18620 75da7462efbb63ed98544de4b979715d 726 SUPERFAMILY SSF55486 232 460 2.64E-38 T 23-04-2016 NIDE_RS18620 75da7462efbb63ed98544de4b979715d 726 Gene3D G3DSA:1.10.390.10 332 461 1.1E-11 T 23-04-2016 NIDE_RS18620 75da7462efbb63ed98544de4b979715d 726 PANTHER PTHR11533:SF185 175 460 1.7E-20 T 23-04-2016 NIDE_RS11530 98e630d828fa73ac06062f59fa927fcd 1129 Pfam PF05170 AsmA family 2 161 4.0E-13 T 23-04-2016 IPR007844 AsmA NIDE_RS11530 98e630d828fa73ac06062f59fa927fcd 1129 PANTHER PTHR30441:SF2 865 1011 4.9E-13 T 23-04-2016 NIDE_RS11530 98e630d828fa73ac06062f59fa927fcd 1129 Pfam PF13116 Protein of unknown function 366 574 7.8E-8 T 23-04-2016 IPR025263 Domain of unknown function DUF3971 NIDE_RS11530 98e630d828fa73ac06062f59fa927fcd 1129 Pfam PF13502 AsmA-like C-terminal region 828 1056 6.4E-29 T 23-04-2016 IPR032712 AsmA-like, C-terminal NIDE_RS11530 98e630d828fa73ac06062f59fa927fcd 1129 PANTHER PTHR30441:SF2 1 472 4.9E-13 T 23-04-2016 NIDE_RS11530 98e630d828fa73ac06062f59fa927fcd 1129 PANTHER PTHR30441:SF2 729 820 4.9E-13 T 23-04-2016 NIDE_RS11530 98e630d828fa73ac06062f59fa927fcd 1129 PANTHER PTHR30441 865 1011 4.9E-13 T 23-04-2016 NIDE_RS11530 98e630d828fa73ac06062f59fa927fcd 1129 PANTHER PTHR30441 1 472 4.9E-13 T 23-04-2016 NIDE_RS11530 98e630d828fa73ac06062f59fa927fcd 1129 PANTHER PTHR30441 729 820 4.9E-13 T 23-04-2016 NIDE_RS15020 2f2416d37d1fc31b4a1ea4d370710c80 106 SMART SM01323 19 101 2.8E-41 T 23-04-2016 IPR003849 Preprotein translocase YajC NIDE_RS15020 2f2416d37d1fc31b4a1ea4d370710c80 106 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 99 5.2E-31 T 23-04-2016 IPR003849 Preprotein translocase YajC NIDE_RS15020 2f2416d37d1fc31b4a1ea4d370710c80 106 Pfam PF02699 Preprotein translocase subunit 23 99 2.0E-29 T 23-04-2016 IPR003849 Preprotein translocase YajC NIDE_RS15020 2f2416d37d1fc31b4a1ea4d370710c80 106 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 2.1E-14 T 23-04-2016 IPR003849 Preprotein translocase YajC NIDE_RS15020 2f2416d37d1fc31b4a1ea4d370710c80 106 PRINTS PR01853 Bacterial YajC preprotein translocase signature 41 59 2.1E-14 T 23-04-2016 IPR003849 Preprotein translocase YajC NIDE_RS15020 2f2416d37d1fc31b4a1ea4d370710c80 106 PANTHER PTHR33909:SF1 1 106 2.3E-29 T 23-04-2016 NIDE_RS15020 2f2416d37d1fc31b4a1ea4d370710c80 106 PANTHER PTHR33909 1 106 2.3E-29 T 23-04-2016 NIDE_RS19440 3e945a33a9628a898beb6e82f68e8698 221 PANTHER PTHR38601 4 221 4.2E-42 T 23-04-2016 NIDE_RS19440 3e945a33a9628a898beb6e82f68e8698 221 PANTHER PTHR38601:SF1 4 221 4.2E-42 T 23-04-2016 NIDE_RS19440 3e945a33a9628a898beb6e82f68e8698 221 ProDom PD037531 MEMBRANE HYDROGENASE SUBUNIT COMPONENT HYDROGENASE-4 E OXIDOREDUCTASE PRECURSOR SIGNAL 1.-.-.- 24 192 4.0E-30 T 23-04-2016 NIDE_RS08265 f11708d935855f02bb74403010348efc 257 SUPERFAMILY SSF161098 5 255 4.3E-55 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS08265 f11708d935855f02bb74403010348efc 257 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 252 4.1E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS08265 f11708d935855f02bb74403010348efc 257 PANTHER PTHR30222 14 257 8.5E-70 T 23-04-2016 NIDE_RS08265 f11708d935855f02bb74403010348efc 257 Gene3D G3DSA:1.10.3720.10 10 255 1.6E-57 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS08265 f11708d935855f02bb74403010348efc 257 PANTHER PTHR30222:SF7 14 257 8.5E-70 T 23-04-2016 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 423 7.3E-211 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 Gene3D G3DSA:3.30.390.10 4 126 8.0E-56 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 Gene3D G3DSA:3.20.20.120 129 424 7.7E-135 T 23-04-2016 IPR029065 Enolase C-terminal domain-like NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 PIRSF PIRSF001400 1 425 6.2E-190 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 423 1.5E-128 T 23-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 SMART SM01192 139 426 1.4E-217 T 23-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 Hamap MF_00318 Enolase [eno]. 2 412 44.91 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 SUPERFAMILY SSF51604 138 423 2.55E-125 T 23-04-2016 IPR029065 Enolase C-terminal domain-like NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 SMART SM01193 4 134 4.9E-92 T 23-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 Pfam PF03952 Enolase, N-terminal domain 4 134 3.2E-60 T 23-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 PANTHER PTHR11902 1 421 9.5E-254 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 ProSitePatterns PS00164 Enolase signature. 335 348 - T 23-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 PRINTS PR00148 Enolase signature 335 349 1.5E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 PRINTS PR00148 Enolase signature 107 123 1.5E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 PRINTS PR00148 Enolase signature 364 381 1.5E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 PRINTS PR00148 Enolase signature 161 174 1.5E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 PRINTS PR00148 Enolase signature 37 51 1.5E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 PRINTS PR00148 Enolase signature 312 323 1.5E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS13330 6505f9d35db09d781cb8d41f11cd00aa 428 SUPERFAMILY SSF54826 4 138 1.62E-56 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NIDE_RS14070 b3c375bc3fb278aff44727ccaa2f7239 134 PANTHER PTHR15680 1 113 1.7E-43 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14070 b3c375bc3fb278aff44727ccaa2f7239 134 PRINTS PR00061 Ribosomal protein L19 signature 33 62 6.8E-37 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14070 b3c375bc3fb278aff44727ccaa2f7239 134 PRINTS PR00061 Ribosomal protein L19 signature 3 32 6.8E-37 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14070 b3c375bc3fb278aff44727ccaa2f7239 134 PRINTS PR00061 Ribosomal protein L19 signature 87 112 6.8E-37 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14070 b3c375bc3fb278aff44727ccaa2f7239 134 PIRSF PIRSF002191 1 133 7.9E-48 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14070 b3c375bc3fb278aff44727ccaa2f7239 134 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 2 112 2.0E-44 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14070 b3c375bc3fb278aff44727ccaa2f7239 134 Pfam PF01245 Ribosomal protein L19 4 111 1.5E-45 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14070 b3c375bc3fb278aff44727ccaa2f7239 134 SUPERFAMILY SSF50104 1 114 6.09E-43 T 23-04-2016 IPR008991 Translation protein SH3-like domain NIDE_RS14070 b3c375bc3fb278aff44727ccaa2f7239 134 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 113 28.953 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14070 b3c375bc3fb278aff44727ccaa2f7239 134 ProSitePatterns PS01015 Ribosomal protein L19 signature. 85 100 - T 23-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12625 98847e26226d10e8d5f22d308a0868df 93 Gene3D G3DSA:1.10.3880.10 4 80 3.8E-20 T 23-04-2016 NIDE_RS12625 98847e26226d10e8d5f22d308a0868df 93 SUPERFAMILY SSF111148 4 78 6.28E-17 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 NIDE_RS12625 98847e26226d10e8d5f22d308a0868df 93 Pfam PF04362 Bacterial Fe(2+) trafficking 4 79 3.6E-14 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 NIDE_RS12625 98847e26226d10e8d5f22d308a0868df 93 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 4 73 1.0E-6 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Gene3D G3DSA:1.10.460.10 139 186 7.7E-55 T 23-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Gene3D G3DSA:1.10.460.10 485 590 7.7E-55 T 23-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Gene3D G3DSA:3.40.50.140 1 137 2.7E-44 T 23-04-2016 IPR006171 Toprim domain NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 166 184 6.4E-36 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 298 307 6.4E-36 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 502 516 6.4E-36 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 6.4E-36 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 375 391 6.4E-36 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 SMART SM00436 108 196 1.8E-46 T 23-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 PANTHER PTHR11390:SF27 1 770 0.0 T 23-04-2016 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 718 51.976 T 23-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 SUPERFAMILY SSF57783 659 697 4.42E-13 T 23-04-2016 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 PANTHER PTHR11390 1 770 0.0 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 SMART SM00493 3 103 3.8E-30 T 23-04-2016 IPR006171 Toprim domain NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 642 4.4E-226 T 23-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Pfam PF01751 Toprim domain 5 117 8.8E-28 T 23-04-2016 IPR006171 Toprim domain NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Gene3D G3DSA:2.70.20.10 323 484 1.1E-27 T 23-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Gene3D G3DSA:2.70.20.10 188 320 1.3E-30 T 23-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 701 740 1.3E-12 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 662 696 1.0E-14 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 608 644 2.2E-5 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Pfam PF01131 DNA topoisomerase 131 574 1.6E-120 T 23-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 SUPERFAMILY SSF57783 604 643 1.7E-7 T 23-04-2016 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Gene3D G3DSA:3.30.65.10 659 703 1.1E-18 T 23-04-2016 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 Gene3D G3DSA:3.30.65.10 604 643 2.3E-12 T 23-04-2016 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 SMART SM00437 247 539 4.3E-102 T 23-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 284 307 - T 23-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 SUPERFAMILY SSF56712 663 670 3.53E-183 T 23-04-2016 IPR023405 DNA topoisomerase, type IA, core domain NIDE_RS04700 058b8840b6f4216846ba89472e169f8b 779 SUPERFAMILY SSF56712 3 590 3.53E-183 T 23-04-2016 IPR023405 DNA topoisomerase, type IA, core domain NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 SUPERFAMILY SSF56024 530 710 4.71E-70 T 23-04-2016 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 Pfam PF13090 Polyphosphate kinase C-terminal domain 361 707 6.9E-153 T 23-04-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 PANTHER PTHR30218:SF0 28 711 0.0 T 23-04-2016 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 Hamap MF_00347 Polyphosphate kinase [ppk]. 32 712 33.576 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 SUPERFAMILY SSF56024 345 527 7.06E-55 T 23-04-2016 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 35 708 1.2E-290 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 Pfam PF02503 Polyphosphate kinase middle domain 152 351 1.1E-60 T 23-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 Gene3D G3DSA:3.30.870.10 345 530 2.9E-75 T 23-04-2016 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 PANTHER PTHR30218 28 711 0.0 T 23-04-2016 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 Gene3D G3DSA:3.30.870.10 531 710 3.9E-73 T 23-04-2016 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 PIRSF PIRSF015589 15 712 1.3E-277 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 Gene3D G3DSA:3.30.1840.10 138 330 1.2E-66 T 23-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 SUPERFAMILY SSF143724 138 343 5.49E-62 T 23-04-2016 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 Pfam PF13089 Polyphosphate kinase N-terminal domain 35 140 2.6E-38 T 23-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 NIDE_RS15590 1400d8c6d32dbdb218b85bd052c879d1 712 SUPERFAMILY SSF140356 32 135 3.01E-38 T 23-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 NIDE_RS10640 0f4405212ca6557bb31b9b8dc5903b56 417 TIGRFAM TIGR00277 HDIG: HDIG domain 166 257 1.9E-7 T 23-04-2016 IPR006675 HDIG domain NIDE_RS10640 0f4405212ca6557bb31b9b8dc5903b56 417 SMART SM00471 162 298 1.2E-4 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS10640 0f4405212ca6557bb31b9b8dc5903b56 417 SUPERFAMILY SSF109604 162 327 5.71E-20 T 23-04-2016 NIDE_RS10640 0f4405212ca6557bb31b9b8dc5903b56 417 Pfam PF11871 Domain of unknown function (DUF3391) 5 130 7.3E-27 T 23-04-2016 IPR021812 Protein of unknown function DUF3391 NIDE_RS10640 0f4405212ca6557bb31b9b8dc5903b56 417 Pfam PF13487 HD domain 219 279 1.5E-14 T 23-04-2016 NIDE_RS10640 0f4405212ca6557bb31b9b8dc5903b56 417 Gene3D G3DSA:1.10.3210.10 163 289 7.0E-17 T 23-04-2016 IPR006674 HD domain NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 PANTHER PTHR12725:SF74 4 240 1.8E-52 T 23-04-2016 NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 126 139 9.0E-6 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 156 172 9.0E-6 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 9.0E-6 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 174 194 9.0E-6 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 Pfam PF13419 Haloacid dehalogenase-like hydrolase 93 209 4.9E-19 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 114 212 9.0E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 Gene3D G3DSA:3.40.50.1000 5 235 3.2E-40 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 PANTHER PTHR12725 4 240 1.8E-52 T 23-04-2016 NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 TIGRFAM TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA 7 212 1.9E-56 T 23-04-2016 IPR011949 HAD-superfamily hydrolase, subfamily IA, REG-2-like NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 103 207 1.2E-11 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS07965 de19ae3b523504d4dfadcc9c5ec98e2b 240 SUPERFAMILY SSF56784 6 238 1.09E-39 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS05510 ebcb58aece1a7238d4a7a4f9d602941b 266 SUPERFAMILY SSF53474 4 263 1.2E-41 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS05510 ebcb58aece1a7238d4a7a4f9d602941b 266 Pfam PF12697 Alpha/beta hydrolase family 31 241 2.1E-11 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS05510 ebcb58aece1a7238d4a7a4f9d602941b 266 Gene3D G3DSA:3.40.50.1820 2 263 3.8E-50 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS05510 ebcb58aece1a7238d4a7a4f9d602941b 266 PANTHER PTHR10992 12 262 2.2E-16 T 23-04-2016 NIDE_RS08485 b18c43714e67b84ab641e8e982906e1f 392 PANTHER PTHR13932 7 388 1.3E-119 T 23-04-2016 NIDE_RS08485 b18c43714e67b84ab641e8e982906e1f 392 Gene3D G3DSA:3.80.30.20 9 244 5.6E-32 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS08485 b18c43714e67b84ab641e8e982906e1f 392 SUPERFAMILY SSF102114 6 379 7.06E-98 T 23-04-2016 NIDE_RS08485 b18c43714e67b84ab641e8e982906e1f 392 Pfam PF04055 Radical SAM superfamily 11 182 2.2E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS08485 b18c43714e67b84ab641e8e982906e1f 392 SMART SM00729 6 227 4.8E-47 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS08485 b18c43714e67b84ab641e8e982906e1f 392 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 9 331 2.7E-75 T 23-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- NIDE_RS08485 b18c43714e67b84ab641e8e982906e1f 392 Pfam PF06969 HemN C-terminal domain 307 367 1.8E-6 T 23-04-2016 IPR010723 HemN, C-terminal NIDE_RS06605 5d8e85031c75884b5577c986fb87cd45 244 PANTHER PTHR21600:SF2 1 241 3.6E-82 T 23-04-2016 NIDE_RS06605 5d8e85031c75884b5577c986fb87cd45 244 Gene3D G3DSA:3.10.290.10 3 66 6.6E-24 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS06605 5d8e85031c75884b5577c986fb87cd45 244 Pfam PF01479 S4 domain 3 45 1.6E-11 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS06605 5d8e85031c75884b5577c986fb87cd45 244 SUPERFAMILY SSF55120 61 239 5.28E-46 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS06605 5d8e85031c75884b5577c986fb87cd45 244 SMART SM00363 3 64 5.1E-10 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS06605 5d8e85031c75884b5577c986fb87cd45 244 Pfam PF00849 RNA pseudouridylate synthase 65 196 3.2E-20 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS06605 5d8e85031c75884b5577c986fb87cd45 244 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 102 116 - T 23-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 NIDE_RS06605 5d8e85031c75884b5577c986fb87cd45 244 PANTHER PTHR21600 1 241 3.6E-82 T 23-04-2016 NIDE_RS06605 5d8e85031c75884b5577c986fb87cd45 244 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 69 228 5.0E-55 T 23-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 NIDE_RS06605 5d8e85031c75884b5577c986fb87cd45 244 SUPERFAMILY SSF55174 2 68 3.14E-14 T 23-04-2016 NIDE_RS00415 1792325de2222f3ea7dff588c5b0da60 763 TIGRFAM TIGR01613 primase_Cterm: phage/plasmid primase, P4 family, C-terminal domain 418 723 7.2E-108 T 23-04-2016 IPR006500 DNA primase, phage/plasmid NIDE_RS00415 1792325de2222f3ea7dff588c5b0da60 763 SMART SM00885 327 471 5.8E-45 T 23-04-2016 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal NIDE_RS00415 1792325de2222f3ea7dff588c5b0da60 763 PANTHER PTHR35372:SF2 322 714 4.7E-119 T 23-04-2016 NIDE_RS00415 1792325de2222f3ea7dff588c5b0da60 763 Pfam PF08706 D5 N terminal like 329 470 5.8E-28 T 23-04-2016 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal NIDE_RS00415 1792325de2222f3ea7dff588c5b0da60 763 Gene3D G3DSA:3.40.1360.10 181 283 6.1E-5 T 23-04-2016 NIDE_RS00415 1792325de2222f3ea7dff588c5b0da60 763 PANTHER PTHR35372 322 714 4.7E-119 T 23-04-2016 NIDE_RS09290 bd268b291d53bac26706e02204057609 249 Pfam PF03330 Lytic transglycolase 62 146 3.8E-22 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain NIDE_RS09290 bd268b291d53bac26706e02204057609 249 PANTHER PTHR34183:SF1 57 164 6.4E-45 T 23-04-2016 NIDE_RS09290 bd268b291d53bac26706e02204057609 249 PANTHER PTHR34183 57 164 6.4E-45 T 23-04-2016 NIDE_RS09290 bd268b291d53bac26706e02204057609 249 SUPERFAMILY SSF50685 63 146 1.5E-10 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain NIDE_RS09290 bd268b291d53bac26706e02204057609 249 Pfam PF05036 Sporulation related domain 167 238 1.0E-14 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 NIDE_RS09290 bd268b291d53bac26706e02204057609 249 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 64 158 1.6E-39 T 23-04-2016 IPR012997 Rare lipoprotein A NIDE_RS09290 bd268b291d53bac26706e02204057609 249 SUPERFAMILY SSF110997 166 237 1.11E-11 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 NIDE_RS09290 bd268b291d53bac26706e02204057609 249 Gene3D G3DSA:3.30.70.1070 167 238 5.5E-11 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 NIDE_RS10705 00fd78f6a9104a3d89a4aefa9efe4b06 398 SUPERFAMILY SSF53756 12 330 1.04E-43 T 23-04-2016 NIDE_RS10705 00fd78f6a9104a3d89a4aefa9efe4b06 398 Gene3D G3DSA:3.40.50.2000 12 122 2.7E-15 T 23-04-2016 NIDE_RS10705 00fd78f6a9104a3d89a4aefa9efe4b06 398 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 210 331 1.3E-14 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 NIDE_RS10705 00fd78f6a9104a3d89a4aefa9efe4b06 398 Gene3D G3DSA:3.40.50.2000 192 331 5.6E-28 T 23-04-2016 NIDE_RS10655 5ee096f78897f3894967a4039f0e79c7 315 Gene3D G3DSA:3.40.50.720 7 189 1.6E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS10655 5ee096f78897f3894967a4039f0e79c7 315 PANTHER PTHR10366:SF370 7 307 3.0E-84 T 23-04-2016 NIDE_RS10655 5ee096f78897f3894967a4039f0e79c7 315 Pfam PF01370 NAD dependent epimerase/dehydratase family 8 237 9.2E-31 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 NIDE_RS10655 5ee096f78897f3894967a4039f0e79c7 315 Gene3D G3DSA:3.90.25.10 190 305 1.2E-12 T 23-04-2016 NIDE_RS10655 5ee096f78897f3894967a4039f0e79c7 315 PANTHER PTHR10366 7 307 3.0E-84 T 23-04-2016 NIDE_RS10655 5ee096f78897f3894967a4039f0e79c7 315 SUPERFAMILY SSF51735 8 304 9.02E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 SMART SM00248 168 197 1.5 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 SMART SM00248 135 164 0.0032 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 SMART SM00248 69 98 0.076 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 SMART SM00248 102 131 4.5E-4 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 SMART SM00248 200 230 4300.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 Gene3D G3DSA:1.25.40.20 67 149 9.1E-29 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 Gene3D G3DSA:1.25.40.20 150 224 1.8E-16 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 PRINTS PR01415 Ankyrin repeat signature 70 85 4.4E-7 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 PRINTS PR01415 Ankyrin repeat signature 118 132 4.4E-7 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 SUPERFAMILY SSF48452 230 358 1.92E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 PANTHER PTHR24198 69 224 3.5E-38 T 23-04-2016 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 Gene3D G3DSA:1.25.40.10 231 360 1.3E-26 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 Pfam PF13432 Tetratricopeptide repeat 311 359 1.8E-4 T 23-04-2016 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 SMART SM00028 299 332 37.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 SMART SM00028 231 264 3.6E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 SMART SM00028 265 298 0.001 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 SUPERFAMILY SSF48403 47 224 1.02E-38 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 Pfam PF12796 Ankyrin repeats (3 copies) 54 132 4.8E-12 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 Pfam PF13414 TPR repeat 240 277 5.1E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20150 ae3d600881c31148e6240cf207804444 368 Pfam PF13637 Ankyrin repeats (many copies) 136 189 4.8E-10 T 23-04-2016 NIDE_RS17950 623fd213977412c1af12df2fae1f1215 143 Gene3D G3DSA:3.40.50.2300 12 132 2.2E-32 T 23-04-2016 NIDE_RS17950 623fd213977412c1af12df2fae1f1215 143 Pfam PF00072 Response regulator receiver domain 19 126 2.7E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS17950 623fd213977412c1af12df2fae1f1215 143 PANTHER PTHR26402 16 131 3.2E-29 T 23-04-2016 NIDE_RS17950 623fd213977412c1af12df2fae1f1215 143 SMART SM00448 16 126 2.7E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS17950 623fd213977412c1af12df2fae1f1215 143 SUPERFAMILY SSF52172 18 132 7.97E-33 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS09585 c63a9276fe2d5077a0599618602428bf 383 Pfam PF11760 Cobalamin synthesis G N-terminal 60 139 7.5E-32 T 23-04-2016 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS09585 c63a9276fe2d5077a0599618602428bf 383 PANTHER PTHR37477 7 205 4.0E-46 T 23-04-2016 NIDE_RS09585 c63a9276fe2d5077a0599618602428bf 383 PANTHER PTHR37477 223 376 4.0E-46 T 23-04-2016 NIDE_RS09585 c63a9276fe2d5077a0599618602428bf 383 SUPERFAMILY SSF159664 236 371 9.94E-35 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 NIDE_RS09585 c63a9276fe2d5077a0599618602428bf 383 Gene3D G3DSA:3.30.420.180 235 368 1.6E-32 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 NIDE_RS09585 c63a9276fe2d5077a0599618602428bf 383 PANTHER PTHR37477:SF1 7 205 4.0E-46 T 23-04-2016 NIDE_RS09585 c63a9276fe2d5077a0599618602428bf 383 PANTHER PTHR37477:SF1 223 376 4.0E-46 T 23-04-2016 NIDE_RS09585 c63a9276fe2d5077a0599618602428bf 383 Pfam PF11761 Cobalamin biosynthesis central region 145 240 2.5E-10 T 23-04-2016 IPR021745 Cobalamin biosynthesis central region KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS09585 c63a9276fe2d5077a0599618602428bf 383 SUPERFAMILY SSF159672 5 249 6.8E-53 T 23-04-2016 NIDE_RS09585 c63a9276fe2d5077a0599618602428bf 383 Pfam PF01890 Cobalamin synthesis G C-terminus 243 367 8.5E-33 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 NIDE_RS06720 5fcb12dfdabda28e385bd628b2eb715d 174 SMART SM01057 1 172 5.6E-45 T 23-04-2016 IPR001148 Alpha carbonic anhydrase NIDE_RS06720 5fcb12dfdabda28e385bd628b2eb715d 174 SUPERFAMILY SSF51069 3 171 2.36E-53 T 23-04-2016 IPR001148 Alpha carbonic anhydrase NIDE_RS06720 5fcb12dfdabda28e385bd628b2eb715d 174 Gene3D G3DSA:3.10.200.10 4 171 1.7E-51 T 23-04-2016 IPR001148 Alpha carbonic anhydrase NIDE_RS06720 5fcb12dfdabda28e385bd628b2eb715d 174 ProSitePatterns PS00162 Alpha-carbonic anhydrases signature. 45 61 - T 23-04-2016 IPR018338 Carbonic anhydrase, alpha-class, conserved site GO:0004089|GO:0006730|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 NIDE_RS06720 5fcb12dfdabda28e385bd628b2eb715d 174 PANTHER PTHR18952:SF122 15 169 3.8E-51 T 23-04-2016 NIDE_RS06720 5fcb12dfdabda28e385bd628b2eb715d 174 Pfam PF00194 Eukaryotic-type carbonic anhydrase 8 171 8.0E-34 T 23-04-2016 IPR001148 Alpha carbonic anhydrase NIDE_RS06720 5fcb12dfdabda28e385bd628b2eb715d 174 PANTHER PTHR18952 15 169 3.8E-51 T 23-04-2016 IPR023561 Carbonic anhydrase, alpha-class NIDE_RS04715 cdf1fae7abfff8df2aa515e7e362cfb8 179 Gene3D G3DSA:1.10.10.60 121 169 2.3E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS04715 cdf1fae7abfff8df2aa515e7e362cfb8 179 SMART SM00342 84 167 6.2E-25 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NIDE_RS04715 cdf1fae7abfff8df2aa515e7e362cfb8 179 Pfam PF12833 Helix-turn-helix domain 90 169 4.0E-21 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NIDE_RS04715 cdf1fae7abfff8df2aa515e7e362cfb8 179 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 151 167 8.8E-5 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NIDE_RS04715 cdf1fae7abfff8df2aa515e7e362cfb8 179 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 136 151 8.8E-5 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NIDE_RS04715 cdf1fae7abfff8df2aa515e7e362cfb8 179 SUPERFAMILY SSF46689 71 118 4.93E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS04715 cdf1fae7abfff8df2aa515e7e362cfb8 179 Gene3D G3DSA:1.10.10.60 71 120 7.1E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS04715 cdf1fae7abfff8df2aa515e7e362cfb8 179 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 121 163 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 NIDE_RS04715 cdf1fae7abfff8df2aa515e7e362cfb8 179 SUPERFAMILY SSF46689 121 171 2.2E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS04715 cdf1fae7abfff8df2aa515e7e362cfb8 179 PANTHER PTHR11019 7 175 1.2E-27 T 23-04-2016 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 TIGRFAM TIGR00422 valS: valine--tRNA ligase 7 890 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 PANTHER PTHR11946:SF5 839 901 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 PANTHER PTHR11946:SF5 1 818 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 Pfam PF08264 Anticodon-binding domain of tRNA 636 779 4.8E-40 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 58 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 19 594 8.8E-199 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 843 907 1.4E-13 T 23-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 PANTHER PTHR11946 839 901 0.0 T 23-04-2016 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 PANTHER PTHR11946 1 818 0.0 T 23-04-2016 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 Gene3D G3DSA:3.90.740.10 198 350 8.6E-40 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 SUPERFAMILY SSF52374 6 196 1.13E-143 T 23-04-2016 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 SUPERFAMILY SSF52374 354 605 1.13E-143 T 23-04-2016 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 SUPERFAMILY SSF47323 607 819 4.3E-56 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 SUPERFAMILY SSF50677 194 354 6.54E-51 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 SUPERFAMILY SSF46589 843 906 1.15E-10 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 Gene3D G3DSA:1.10.730.10 595 769 9.8E-61 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 Gene3D G3DSA:3.40.50.620 8 197 3.8E-145 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 Gene3D G3DSA:3.40.50.620 354 593 3.8E-145 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 PRINTS PR00986 Valyl-tRNA synthetase signature 476 497 1.2E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 PRINTS PR00986 Valyl-tRNA synthetase signature 507 525 1.2E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 PRINTS PR00986 Valyl-tRNA synthetase signature 235 252 1.2E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 PRINTS PR00986 Valyl-tRNA synthetase signature 359 372 1.2E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 PRINTS PR00986 Valyl-tRNA synthetase signature 40 51 1.2E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 Hamap MF_02004 Valine--tRNA ligase [valS]. 6 908 15.271 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 NIDE_RS07955 4e1d4e502f6173a1af2996be7312d445 920 Gene3D G3DSA:1.10.287.380 849 907 1.8E-9 T 23-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 NIDE_RS15260 ec6cff8cacfe719021a8b8d6df0bba81 234 Gene3D G3DSA:1.10.3820.10 21 223 1.7E-17 T 23-04-2016 NIDE_RS15260 ec6cff8cacfe719021a8b8d6df0bba81 234 SUPERFAMILY SSF48695 16 108 6.55E-21 T 23-04-2016 IPR011031 Multihaem cytochrome NIDE_RS15260 ec6cff8cacfe719021a8b8d6df0bba81 234 SUPERFAMILY SSF48695 147 223 6.55E-21 T 23-04-2016 IPR011031 Multihaem cytochrome NIDE_RS15260 ec6cff8cacfe719021a8b8d6df0bba81 234 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 6 162 2.4E-12 T 23-04-2016 IPR005126 NapC/NirT cytochrome c, N-terminal NIDE_RS11485 b02407417907739bc6b0fdabf4186dda 131 Gene3D G3DSA:1.10.260.40 33 98 1.4E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS11485 b02407417907739bc6b0fdabf4186dda 131 SUPERFAMILY SSF47413 31 98 4.22E-15 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS11485 b02407417907739bc6b0fdabf4186dda 131 SMART SM00530 36 92 7.2E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS11485 b02407417907739bc6b0fdabf4186dda 131 Pfam PF12844 Helix-turn-helix domain 40 86 1.3E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 SMART SM00448 4 115 1.1E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 SUPERFAMILY SSF52172 2 187 1.99E-43 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 SUPERFAMILY SSF46689 421 472 1.43E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 Gene3D G3DSA:1.10.10.60 416 471 1.5E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 Gene3D G3DSA:3.40.50.2300 2 120 8.6E-35 T 23-04-2016 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 SUPERFAMILY SSF52540 143 376 4.89E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 Pfam PF02954 Bacterial regulatory protein, Fis family 429 469 9.6E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 Gene3D G3DSA:3.40.50.300 140 315 1.2E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 452 472 3.0E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 435 452 3.0E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 Pfam PF00158 Sigma-54 interaction domain 144 310 3.6E-54 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 PANTHER PTHR32071 4 482 1.6E-155 T 23-04-2016 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 Pfam PF00072 Response regulator receiver domain 6 115 7.2E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 SMART SM00382 164 306 3.5E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS15000 b0ca1144a876ecb5c400de7a612deaf7 483 Gene3D G3DSA:1.10.8.60 317 378 8.1E-13 T 23-04-2016 NIDE_RS02815 a74bbad759605997ce664a2f540d6166 355 Pfam PF00146 NADH dehydrogenase 13 347 7.6E-131 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 NIDE_RS02815 a74bbad759605997ce664a2f540d6166 355 PANTHER PTHR11432 5 355 2.7E-163 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 NIDE_RS02815 a74bbad759605997ce664a2f540d6166 355 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 226 239 - T 23-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 NIDE_RS02815 a74bbad759605997ce664a2f540d6166 355 PANTHER PTHR11432:SF3 5 355 2.7E-163 T 23-04-2016 NIDE_RS02815 a74bbad759605997ce664a2f540d6166 355 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 52 67 - T 23-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 NIDE_RS02815 a74bbad759605997ce664a2f540d6166 355 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 6 353 26.4 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 SUPERFAMILY SSF51735 4 180 1.68E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 PANTHER PTHR32338 4 357 1.8E-172 T 23-04-2016 NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 4 351 43.48 T 23-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 Gene3D G3DSA:3.40.50.720 2 160 9.2E-65 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 4 357 1.2E-133 T 23-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 Gene3D G3DSA:3.30.360.10 161 325 6.5E-62 T 23-04-2016 NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 144 3.8E-33 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 PANTHER PTHR32338:SF8 4 357 1.8E-172 T 23-04-2016 NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 SMART SM00859 5 144 8.5E-56 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 161 328 3.0E-21 T 23-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS12650 380fffc5e5b99a1ad45dba9b0d8dcadf 357 SUPERFAMILY SSF55347 152 325 3.27E-52 T 23-04-2016 NIDE_RS00990 ff4e4c8b705fa918d2264145032154e6 191 Pfam PF00156 Phosphoribosyl transferase domain 64 169 1.1E-9 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 NIDE_RS00990 ff4e4c8b705fa918d2264145032154e6 191 Gene3D G3DSA:3.40.50.2020 4 185 1.0E-47 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS00990 ff4e4c8b705fa918d2264145032154e6 191 SUPERFAMILY SSF53271 21 185 3.02E-38 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS00990 ff4e4c8b705fa918d2264145032154e6 191 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 22 183 4.8E-38 T 23-04-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS00990 ff4e4c8b705fa918d2264145032154e6 191 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 191 23.148 T 23-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS00990 ff4e4c8b705fa918d2264145032154e6 191 PANTHER PTHR19278 4 185 7.5E-51 T 23-04-2016 NIDE_RS12695 2c6d1216aa13d688ab6d6003f36ecd27 217 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 11 189 6.3E-37 T 23-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 NIDE_RS12695 2c6d1216aa13d688ab6d6003f36ecd27 217 PANTHER PTHR35330 4 188 6.6E-37 T 23-04-2016 NIDE_RS12695 2c6d1216aa13d688ab6d6003f36ecd27 217 Gene3D G3DSA:3.30.160.110 117 152 3.3E-10 T 23-04-2016 NIDE_RS12695 2c6d1216aa13d688ab6d6003f36ecd27 217 Pfam PF13241 Putative NAD(P)-binding 10 119 4.3E-19 T 23-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 NIDE_RS12695 2c6d1216aa13d688ab6d6003f36ecd27 217 SUPERFAMILY SSF51735 7 115 3.02E-12 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12695 2c6d1216aa13d688ab6d6003f36ecd27 217 Gene3D G3DSA:3.40.50.720 7 115 4.4E-24 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12695 2c6d1216aa13d688ab6d6003f36ecd27 217 SUPERFAMILY SSF75615 118 192 1.24E-16 T 23-04-2016 NIDE_RS08290 a0393cde0b04eb3c93ec05556d9168ea 267 SUPERFAMILY SSF48371 93 218 9.6E-14 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS08290 a0393cde0b04eb3c93ec05556d9168ea 267 SMART SM00567 E-Z type HEAT repeats 111 140 3.6 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS08290 a0393cde0b04eb3c93ec05556d9168ea 267 SMART SM00567 E-Z type HEAT repeats 175 204 38.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS08290 a0393cde0b04eb3c93ec05556d9168ea 267 Gene3D G3DSA:1.25.10.10 174 222 8.3E-6 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS08290 a0393cde0b04eb3c93ec05556d9168ea 267 Gene3D G3DSA:1.25.10.10 86 173 9.8E-11 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS10470 750b6331185c65fb5069eb05826f7938 349 PANTHER PTHR32071 8 165 3.5E-31 T 23-04-2016 NIDE_RS10470 750b6331185c65fb5069eb05826f7938 349 SUPERFAMILY SSF52172 25 157 1.07E-34 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10470 750b6331185c65fb5069eb05826f7938 349 Gene3D G3DSA:3.40.50.2300 26 151 4.0E-31 T 23-04-2016 NIDE_RS10470 750b6331185c65fb5069eb05826f7938 349 Pfam PF00072 Response regulator receiver domain 27 136 2.8E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10470 750b6331185c65fb5069eb05826f7938 349 Pfam PF02108 Flagellar assembly protein FliH 209 335 3.6E-20 T 23-04-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE NIDE_RS10470 750b6331185c65fb5069eb05826f7938 349 SMART SM00448 25 136 2.6E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS17725 05d75ffaef66de2f76814aad1b45f551 116 SUPERFAMILY SSF46626 10 115 1.33E-21 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17725 05d75ffaef66de2f76814aad1b45f551 116 Gene3D G3DSA:1.10.760.10 20 114 1.6E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17725 05d75ffaef66de2f76814aad1b45f551 116 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 29 111 7.2E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS20870 527c6b60ba3b380b09e14a054f0ee33a 201 PANTHER PTHR30176 47 200 7.4E-23 T 23-04-2016 NIDE_RS20870 527c6b60ba3b380b09e14a054f0ee33a 201 SUPERFAMILY SSF54862 44 180 1.7E-17 T 23-04-2016 NIDE_RS20870 527c6b60ba3b380b09e14a054f0ee33a 201 PANTHER PTHR30176:SF3 47 200 7.4E-23 T 23-04-2016 NIDE_RS20870 527c6b60ba3b380b09e14a054f0ee33a 201 Gene3D G3DSA:3.30.70.20 59 71 5.5E-11 T 23-04-2016 NIDE_RS20870 527c6b60ba3b380b09e14a054f0ee33a 201 Gene3D G3DSA:3.30.70.20 144 190 5.5E-11 T 23-04-2016 NIDE_RS20870 527c6b60ba3b380b09e14a054f0ee33a 201 Gene3D G3DSA:3.30.70.20 103 143 1.5E-5 T 23-04-2016 NIDE_RS20870 527c6b60ba3b380b09e14a054f0ee33a 201 Gene3D G3DSA:3.30.70.20 72 102 3.4E-7 T 23-04-2016 NIDE_RS20870 527c6b60ba3b380b09e14a054f0ee33a 201 Pfam PF12838 4Fe-4S dicluster domain 138 179 1.1E-6 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS20870 527c6b60ba3b380b09e14a054f0ee33a 201 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 62 73 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 Pfam PF00072 Response regulator receiver domain 6 117 1.0E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 SUPERFAMILY SSF52172 3 134 7.26E-37 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 SMART SM00421 150 207 5.5E-23 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 Gene3D G3DSA:1.10.10.10 124 214 3.4E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 PANTHER PTHR26402 4 213 2.8E-75 T 23-04-2016 NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 SMART SM00448 4 117 3.2E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 SUPERFAMILY SSF46894 144 213 1.7E-21 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 207 1.2E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 6.9E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 6.9E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 6.9E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 PANTHER PTHR26402:SF151 4 213 2.8E-75 T 23-04-2016 NIDE_RS04285 f298d2270fb417ec56cdbdfa3155884d 216 Gene3D G3DSA:3.40.50.2300 2 123 1.1E-39 T 23-04-2016 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 SUPERFAMILY SSF46689 353 460 4.93E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 Gene3D G3DSA:3.40.50.300 138 312 5.6E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 SMART SM00382 160 303 5.7E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 Gene3D G3DSA:1.10.10.60 366 460 6.8E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 Pfam PF00158 Sigma-54 interaction domain 140 306 1.2E-69 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 Gene3D G3DSA:1.10.8.60 313 365 2.0E-25 T 23-04-2016 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 PANTHER PTHR32071:SF17 1 465 4.0E-214 T 23-04-2016 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 Gene3D G3DSA:3.40.50.2300 2 129 6.2E-39 T 23-04-2016 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 SUPERFAMILY SSF52540 139 381 1.14E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 SUPERFAMILY SSF52172 3 185 2.13E-47 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 Pfam PF02954 Bacterial regulatory protein, Fis family 420 456 2.2E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 Pfam PF00072 Response regulator receiver domain 5 114 9.8E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 SMART SM00448 3 114 4.7E-37 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05645 8565f31ec26b333b0df7462cd4e22dca 466 PANTHER PTHR32071 1 465 4.0E-214 T 23-04-2016 NIDE_RS10650 b8d5e913af5390dc1571b2ff86814f8c 397 Gene3D G3DSA:3.40.640.10 17 275 5.9E-50 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS10650 b8d5e913af5390dc1571b2ff86814f8c 397 PIRSF PIRSF000390 9 397 1.3E-78 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS10650 b8d5e913af5390dc1571b2ff86814f8c 397 PANTHER PTHR30244:SF3 21 228 2.2E-59 T 23-04-2016 NIDE_RS10650 b8d5e913af5390dc1571b2ff86814f8c 397 PANTHER PTHR30244:SF3 248 396 2.2E-59 T 23-04-2016 NIDE_RS10650 b8d5e913af5390dc1571b2ff86814f8c 397 PANTHER PTHR30244 21 228 2.2E-59 T 23-04-2016 NIDE_RS10650 b8d5e913af5390dc1571b2ff86814f8c 397 PANTHER PTHR30244 248 396 2.2E-59 T 23-04-2016 NIDE_RS10650 b8d5e913af5390dc1571b2ff86814f8c 397 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 22 393 4.2E-74 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS10650 b8d5e913af5390dc1571b2ff86814f8c 397 Gene3D G3DSA:3.90.1150.10 276 391 1.1E-17 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS10650 b8d5e913af5390dc1571b2ff86814f8c 397 SUPERFAMILY SSF53383 17 396 1.73E-78 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS07135 b9f5ad7347b53509458343224b97234d 266 TIGRFAM TIGR01868 casD_Cas5e: CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI 4 197 2.0E-42 T 23-04-2016 IPR010147 CRISPR-associated protein, CasD GO:0003723|GO:0051607 NIDE_RS07135 b9f5ad7347b53509458343224b97234d 266 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 4 46 2.8E-8 T 23-04-2016 IPR013422 CRISPR-associated protein Cas5, N-terminal NIDE_RS07135 b9f5ad7347b53509458343224b97234d 266 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 4 258 1.5E-38 T 23-04-2016 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 NIDE_RS14380 2d0a49e567619bba845bc6e9eb8b9afa 454 SUPERFAMILY SSF111369 216 372 3.4E-6 T 23-04-2016 NIDE_RS14380 2d0a49e567619bba845bc6e9eb8b9afa 454 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 206 390 7.4E-9 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS14380 2d0a49e567619bba845bc6e9eb8b9afa 454 Gene3D G3DSA:2.40.50.100 309 347 3.3E-5 T 23-04-2016 NIDE_RS14380 2d0a49e567619bba845bc6e9eb8b9afa 454 Gene3D G3DSA:2.40.50.100 217 251 3.3E-5 T 23-04-2016 NIDE_RS14380 2d0a49e567619bba845bc6e9eb8b9afa 454 PANTHER PTHR32347 256 448 4.6E-14 T 23-04-2016 NIDE_RS09555 77902a80216ccd1f9c4d1070e0659030 241 Pfam PF00970 Oxidoreductase FAD-binding domain 7 102 9.0E-14 T 23-04-2016 IPR008333 Oxidoreductase, FAD-binding domain NIDE_RS09555 77902a80216ccd1f9c4d1070e0659030 241 SUPERFAMILY SSF52343 93 224 2.37E-6 T 23-04-2016 NIDE_RS09555 77902a80216ccd1f9c4d1070e0659030 241 SUPERFAMILY SSF63380 5 106 2.51E-19 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 NIDE_RS09555 77902a80216ccd1f9c4d1070e0659030 241 Gene3D G3DSA:2.40.30.10 6 92 4.1E-16 T 23-04-2016 NIDE_RS09555 77902a80216ccd1f9c4d1070e0659030 241 Gene3D G3DSA:3.40.50.80 93 150 2.9E-5 T 23-04-2016 NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 Gene3D G3DSA:3.40.50.150 120 285 1.2E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 Gene3D G3DSA:3.30.1130.10 4 119 1.9E-29 T 23-04-2016 NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 Pfam PF02152 Dihydroneopterin aldolase 5 115 3.1E-25 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 Pfam PF03848 Tellurite resistance protein TehB 141 235 1.4E-8 T 23-04-2016 IPR015985 Tellurite resistance methyltransferase TehB-like domain NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 SUPERFAMILY SSF53335 123 281 1.04E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 PANTHER PTHR20941:SF3 1 251 4.3E-16 T 23-04-2016 NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 SMART SM00905 5 117 6.8E-29 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 SUPERFAMILY SSF55620 4 119 6.12E-27 T 23-04-2016 NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 116 3.2E-22 T 23-04-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 TIGRFAM TIGR00526 folB_dom: FolB domain 4 119 6.3E-19 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 NIDE_RS20430 789f2c66778ff42c8608d45273ce07f0 309 PANTHER PTHR20941 1 251 4.3E-16 T 23-04-2016 NIDE_RS11290 e113f35bc50cf5c93e43485f9a1db637 120 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 17 61 6.4E-7 T 23-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS11290 e113f35bc50cf5c93e43485f9a1db637 120 Pfam PF01192 RNA polymerase Rpb6 16 63 2.8E-7 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS11290 e113f35bc50cf5c93e43485f9a1db637 120 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 4 64 10.44 T 23-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS11290 e113f35bc50cf5c93e43485f9a1db637 120 SUPERFAMILY SSF63562 12 72 1.92E-11 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS11290 e113f35bc50cf5c93e43485f9a1db637 120 Gene3D G3DSA:3.90.940.10 15 79 1.8E-8 T 23-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS11290 e113f35bc50cf5c93e43485f9a1db637 120 SMART SM01409 11 63 6.0E-7 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS16970 2d8f32edc082b762bd09135a14b5102c 560 Gene3D G3DSA:3.30.1510.10 128 242 6.9E-36 T 23-04-2016 NIDE_RS16970 2d8f32edc082b762bd09135a14b5102c 560 Pfam PF01268 Formate--tetrahydrofolate ligase 1 559 1.1E-230 T 23-04-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 NIDE_RS16970 2d8f32edc082b762bd09135a14b5102c 560 Gene3D G3DSA:3.40.50.300 243 443 7.6E-131 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16970 2d8f32edc082b762bd09135a14b5102c 560 Gene3D G3DSA:3.40.50.300 13 127 7.6E-131 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16970 2d8f32edc082b762bd09135a14b5102c 560 SUPERFAMILY SSF52540 3 558 1.33E-207 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16970 2d8f32edc082b762bd09135a14b5102c 560 Gene3D G3DSA:3.10.410.10 446 535 1.9E-34 T 23-04-2016 NIDE_RS16970 2d8f32edc082b762bd09135a14b5102c 560 PANTHER PTHR10025 2 559 9.9E-300 T 23-04-2016 NIDE_RS16970 2d8f32edc082b762bd09135a14b5102c 560 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 323 334 - T 23-04-2016 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 NIDE_RS16970 2d8f32edc082b762bd09135a14b5102c 560 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 102 112 - T 23-04-2016 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 NIDE_RS16970 2d8f32edc082b762bd09135a14b5102c 560 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 560 41.569 T 23-04-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 NIDE_RS14930 1d87bb3e794a1ebf79d7cdfaa4264c6a 412 Gene3D G3DSA:1.10.710.10 45 234 1.7E-18 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 NIDE_RS14930 1d87bb3e794a1ebf79d7cdfaa4264c6a 412 Pfam PF13435 Cytochrome c554 and c-prime 50 133 3.4E-9 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 NIDE_RS14930 1d87bb3e794a1ebf79d7cdfaa4264c6a 412 SUPERFAMILY SSF48695 46 133 7.34E-19 T 23-04-2016 IPR011031 Multihaem cytochrome NIDE_RS14930 1d87bb3e794a1ebf79d7cdfaa4264c6a 412 SUPERFAMILY SSF48695 179 244 7.34E-19 T 23-04-2016 IPR011031 Multihaem cytochrome NIDE_RS03855 93af4e7f88f6a3a5ba1e07d52f809137 236 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 125 136 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS03855 93af4e7f88f6a3a5ba1e07d52f809137 236 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 54 62 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 NIDE_RS03855 93af4e7f88f6a3a5ba1e07d52f809137 236 Gene3D G3DSA:3.30.70.20 115 176 4.9E-7 T 23-04-2016 NIDE_RS03855 93af4e7f88f6a3a5ba1e07d52f809137 236 SUPERFAMILY SSF46548 73 177 4.71E-11 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 NIDE_RS03855 93af4e7f88f6a3a5ba1e07d52f809137 236 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 18 89 3.9E-8 T 23-04-2016 NIDE_RS03855 93af4e7f88f6a3a5ba1e07d52f809137 236 SUPERFAMILY SSF54292 18 92 8.13E-12 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NIDE_RS03855 93af4e7f88f6a3a5ba1e07d52f809137 236 Gene3D G3DSA:3.10.20.30 19 88 1.7E-5 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 PANTHER PTHR22617 136 304 3.4E-146 T 23-04-2016 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 PANTHER PTHR22617 320 554 3.4E-146 T 23-04-2016 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 PANTHER PTHR22617 627 984 3.4E-146 T 23-04-2016 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Pfam PF01627 Hpt domain 159 251 4.8E-14 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Pfam PF01627 Hpt domain 341 432 1.8E-17 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Pfam PF01627 Hpt domain 9 95 3.7E-7 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SUPERFAMILY SSF47384 506 544 6.67E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 PANTHER PTHR22617:SF6 136 304 3.4E-146 T 23-04-2016 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 PANTHER PTHR22617:SF6 320 554 3.4E-146 T 23-04-2016 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 PANTHER PTHR22617:SF6 627 984 3.4E-146 T 23-04-2016 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SUPERFAMILY SSF52172 996 1125 1.34E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Gene3D G3DSA:2.30.30.40 922 967 3.4E-15 T 23-04-2016 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Gene3D G3DSA:2.30.30.40 837 858 3.4E-15 T 23-04-2016 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SUPERFAMILY SSF55874 651 835 4.32E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SUPERFAMILY SSF47226 7 128 3.14E-12 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SUPERFAMILY SSF50341 836 967 1.19E-23 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SUPERFAMILY SSF47226 338 444 3.4E-26 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 506 552 9.1E-9 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SMART SM00260 829 968 6.3E-20 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 697 836 1.9E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SMART SM01231 505 642 2.1E-10 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SMART SM00073 6 104 0.17 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SMART SM00073 338 435 2.8E-26 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SMART SM00073 157 254 8.6E-18 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Pfam PF00072 Response regulator receiver domain 1007 1117 1.1E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Gene3D G3DSA:1.20.120.160 338 468 1.7E-32 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Gene3D G3DSA:1.20.120.160 6 139 5.5E-11 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Gene3D G3DSA:1.20.120.160 157 290 2.0E-27 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Gene3D G3DSA:3.40.50.2300 1002 1125 7.0E-35 T 23-04-2016 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 797 815 2.7E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 821 834 2.7E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 739 753 2.7E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SMART SM00387 694 837 1.2E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SMART SM00448 1004 1117 2.0E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Pfam PF01584 CheW-like domain 842 969 3.7E-21 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Gene3D G3DSA:1.10.287.560 597 614 5.8E-11 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Gene3D G3DSA:1.10.287.560 506 540 5.8E-11 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 Gene3D G3DSA:3.30.565.10 651 836 1.4E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS12170 3eedc6d8a24a2c560d150347c4670bb4 1129 SUPERFAMILY SSF47226 157 268 7.07E-23 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS15550 04a4fa0c33c4676fcc647adb4aa0f9af 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 263 7.7E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS15550 04a4fa0c33c4676fcc647adb4aa0f9af 271 SUPERFAMILY SSF161098 3 271 2.29E-71 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS15550 04a4fa0c33c4676fcc647adb4aa0f9af 271 PANTHER PTHR32243:SF18 3 271 1.1E-92 T 23-04-2016 NIDE_RS15550 04a4fa0c33c4676fcc647adb4aa0f9af 271 Gene3D G3DSA:1.10.3720.10 3 258 1.1E-62 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS15550 04a4fa0c33c4676fcc647adb4aa0f9af 271 PANTHER PTHR32243 3 271 1.1E-92 T 23-04-2016 NIDE_RS05605 922717ae487009b4d4f4bf2d9884eaeb 341 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 136 152 - T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 NIDE_RS05605 922717ae487009b4d4f4bf2d9884eaeb 341 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 5 337 2.6E-131 T 23-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 NIDE_RS05605 922717ae487009b4d4f4bf2d9884eaeb 341 Gene3D G3DSA:3.20.20.210 2 339 7.1E-149 T 23-04-2016 NIDE_RS05605 922717ae487009b4d4f4bf2d9884eaeb 341 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 2 337 1.7E-136 T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 NIDE_RS05605 922717ae487009b4d4f4bf2d9884eaeb 341 PANTHER PTHR21091:SF2 1 341 8.2E-145 T 23-04-2016 NIDE_RS05605 922717ae487009b4d4f4bf2d9884eaeb 341 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 18 27 - T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 NIDE_RS05605 922717ae487009b4d4f4bf2d9884eaeb 341 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 2 339 48.692 T 23-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 NIDE_RS05605 922717ae487009b4d4f4bf2d9884eaeb 341 SUPERFAMILY SSF51726 2 339 1.83E-118 T 23-04-2016 NIDE_RS05605 922717ae487009b4d4f4bf2d9884eaeb 341 PANTHER PTHR21091 1 341 8.2E-145 T 23-04-2016 NIDE_RS03430 697839600cab7df925e2a584f9b79776 165 PANTHER PTHR30476:SF0 3 165 5.8E-77 T 23-04-2016 NIDE_RS03430 697839600cab7df925e2a584f9b79776 165 PANTHER PTHR30476 3 165 5.8E-77 T 23-04-2016 NIDE_RS03430 697839600cab7df925e2a584f9b79776 165 Pfam PF04461 Protein of unknown function (DUF520) 5 165 6.8E-64 T 23-04-2016 IPR007551 Protein of unknown function DUF520 NIDE_RS03430 697839600cab7df925e2a584f9b79776 165 Gene3D G3DSA:3.30.70.860 100 165 5.3E-31 T 23-04-2016 NIDE_RS03430 697839600cab7df925e2a584f9b79776 165 Gene3D G3DSA:3.30.70.990 12 99 5.9E-32 T 23-04-2016 NIDE_RS03430 697839600cab7df925e2a584f9b79776 165 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 4 165 25.367 T 23-04-2016 IPR007551 Protein of unknown function DUF520 NIDE_RS03430 697839600cab7df925e2a584f9b79776 165 SUPERFAMILY SSF89963 6 91 1.05E-29 T 23-04-2016 IPR007551 Protein of unknown function DUF520 NIDE_RS03430 697839600cab7df925e2a584f9b79776 165 SUPERFAMILY SSF89963 94 165 5.75E-27 T 23-04-2016 IPR007551 Protein of unknown function DUF520 NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 SUPERFAMILY SSF49503 1305 1415 1.82E-6 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 SUPERFAMILY SSF49503 391 540 1.28E-10 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 Gene3D G3DSA:2.60.40.420 1099 1240 4.8E-8 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 ProSitePatterns PS00080 Multicopper oxidases signature 2. 526 537 - T 23-04-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 SUPERFAMILY SSF49503 1121 1228 2.63E-10 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 Gene3D G3DSA:2.60.40.420 151 321 1.1E-13 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 Gene3D G3DSA:2.60.40.420 1307 1420 6.6E-13 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 Gene3D G3DSA:2.60.40.420 941 1009 3.7E-5 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 Gene3D G3DSA:2.60.40.420 794 842 3.7E-5 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 SUPERFAMILY SSF49503 218 318 4.47E-9 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 Gene3D G3DSA:2.60.40.420 414 539 4.9E-8 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS17940 e4debdfb0d8f3f087ad56a7a4ac4ec11 1645 SUPERFAMILY SSF49503 1517 1615 1.66E-5 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 322 441 9.5E-28 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 141 150 - T 23-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 212 318 8.8E-15 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 181 9.1E-39 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 Gene3D G3DSA:3.30.310.50 468 546 2.2E-29 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 480 541 1.9E-10 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 SUPERFAMILY SSF53738 27 236 7.53E-49 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 SUPERFAMILY SSF55957 435 546 9.24E-20 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 SUPERFAMILY SSF53738 307 449 6.47E-32 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 SUPERFAMILY SSF53738 210 318 8.95E-8 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 Gene3D G3DSA:3.40.120.10 312 447 1.0E-33 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 Gene3D G3DSA:3.40.120.10 227 311 2.9E-44 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 545 2.2E-285 T 23-04-2016 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|MetaCyc: PWY-7343 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 Gene3D G3DSA:3.40.120.10 32 226 5.5E-60 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 PANTHER PTHR22573 18 545 7.8E-271 T 23-04-2016 NIDE_RS09505 b26d460c60e9b7a291da6d91f3ca0e83 550 PANTHER PTHR22573:SF52 18 545 7.8E-271 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1252 1262 2.6E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1293 1306 2.6E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1234 1248 2.6E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1269 1287 2.6E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Gene3D G3DSA:3.30.450.20 919 1060 1.3E-24 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Gene3D G3DSA:3.30.450.20 538 659 2.2E-27 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00388 1082 1147 1.5E-23 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 PANTHER PTHR24423 1480 1599 5.3E-210 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 PANTHER PTHR24423 658 878 5.3E-210 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 PANTHER PTHR24423 1020 1323 5.3E-210 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Pfam PF13426 PAS domain 944 1060 2.8E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Pfam PF00989 PAS fold 810 914 3.0E-8 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Pfam PF00989 PAS fold 553 665 4.0E-14 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Gene3D G3DSA:3.40.50.2300 1473 1602 1.2E-45 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SUPERFAMILY SSF55785 946 1071 2.74E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00086 628 668 8.3 T 23-04-2016 IPR001610 PAC motif NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00086 880 920 22.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00086 753 795 1.8E-5 T 23-04-2016 IPR001610 PAC motif NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00086 362 405 9.2E-6 T 23-04-2016 IPR001610 PAC motif NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00086 1020 1062 5.1E-9 T 23-04-2016 IPR001610 PAC motif NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00086 498 540 3.6E-5 T 23-04-2016 IPR001610 PAC motif NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Gene3D G3DSA:3.30.565.10 1148 1307 2.1E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SUPERFAMILY SSF55785 433 542 4.03E-20 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1083 1147 1.6E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Gene3D G3DSA:1.10.287.130 1075 1143 8.3E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SUPERFAMILY SSF47384 1067 1148 6.87E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SUPERFAMILY SSF55785 563 677 8.2E-28 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Pfam PF00072 Response regulator receiver domain 1329 1443 2.8E-15 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Pfam PF00072 Response regulator receiver domain 1484 1595 2.7E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 310 410 1.2E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 676 801 4.3E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 803 927 1.6E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 548 674 2.7E-32 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 449 544 2.9E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 941 1069 1.3E-18 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Gene3D G3DSA:3.30.450.20 415 537 1.1E-25 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SUPERFAMILY SSF55785 792 917 9.13E-20 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SUPERFAMILY SSF55874 1136 1304 1.57E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00091 287 355 9.4E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00091 807 873 3.1E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00091 552 618 1.0E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00091 680 749 1.1E-4 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00091 932 1000 7.1E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00091 424 492 3.0 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SUPERFAMILY SSF52172 1479 1600 1.07E-39 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1194 1307 2.4E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Gene3D G3DSA:3.30.450.20 796 917 1.5E-20 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SUPERFAMILY SSF52172 1323 1448 2.28E-25 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00387 1194 1309 8.3E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SUPERFAMILY SSF55785 292 407 3.32E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Gene3D G3DSA:3.40.50.2300 1325 1449 2.1E-25 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SUPERFAMILY SSF55785 665 793 4.51E-22 T 23-04-2016 IPR000014 PAS domain NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Gene3D G3DSA:3.30.450.20 660 795 8.7E-32 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Gene3D G3DSA:3.30.450.20 279 414 1.2E-30 T 23-04-2016 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00448 1327 1445 1.5E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 SMART SM00448 1481 1595 5.4E-40 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Pfam PF08447 PAS fold 704 788 1.1E-18 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Pfam PF08447 PAS fold 448 534 1.8E-21 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS20195 99358db08d7fee2e1dd1121baa1b6d24 1610 Pfam PF08447 PAS fold 310 399 9.2E-23 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS15295 7612643efe84f63c2b4e7016874dffa7 239 PANTHER PTHR10859:SF91 11 239 1.2E-80 T 23-04-2016 NIDE_RS15295 7612643efe84f63c2b4e7016874dffa7 239 Pfam PF00535 Glycosyl transferase family 2 12 183 2.2E-33 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS15295 7612643efe84f63c2b4e7016874dffa7 239 Gene3D G3DSA:3.90.550.10 7 211 1.5E-33 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS15295 7612643efe84f63c2b4e7016874dffa7 239 PANTHER PTHR10859 11 239 1.2E-80 T 23-04-2016 NIDE_RS15295 7612643efe84f63c2b4e7016874dffa7 239 SUPERFAMILY SSF53448 7 224 1.59E-49 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS00730 6591a128e7f568f9c87526117bf5a23c 115 PANTHER PTHR12599 7 106 2.8E-25 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 NIDE_RS00730 6591a128e7f568f9c87526117bf5a23c 115 Gene3D G3DSA:3.30.1360.20 11 106 4.0E-26 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 NIDE_RS00730 6591a128e7f568f9c87526117bf5a23c 115 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 15 108 21.344 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 NIDE_RS00730 6591a128e7f568f9c87526117bf5a23c 115 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 17 105 5.3E-28 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 NIDE_RS00730 6591a128e7f568f9c87526117bf5a23c 115 SUPERFAMILY SSF55248 15 107 2.35E-27 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 SUPERFAMILY SSF82866 301 507 7.85E-43 T 23-04-2016 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 Gene3D G3DSA:1.10.3850.10 814 1031 3.9E-62 T 23-04-2016 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 Gene3D G3DSA:1.10.3850.10 289 508 6.0E-60 T 23-04-2016 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1037 0.0 T 23-04-2016 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 SUPERFAMILY SSF82714 194 275 4.32E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 PANTHER PTHR32063:SF24 2 1034 0.0 T 23-04-2016 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 SUPERFAMILY SSF82693 43 130 4.97E-19 T 23-04-2016 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 SUPERFAMILY SSF82714 725 808 1.31E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 4.6E-40 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 4.6E-40 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 PRINTS PR00702 Acriflavin resistance protein family signature 398 422 4.6E-40 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 4.6E-40 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 PRINTS PR00702 Acriflavin resistance protein family signature 370 391 4.6E-40 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 4.6E-40 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 PRINTS PR00702 Acriflavin resistance protein family signature 343 366 4.6E-40 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 SUPERFAMILY SSF82693 576 666 3.92E-6 T 23-04-2016 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 Gene3D G3DSA:3.30.2090.10 193 275 2.0E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 Gene3D G3DSA:3.30.2090.10 725 808 1.9E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 PANTHER PTHR32063 2 1034 0.0 T 23-04-2016 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 Gene3D G3DSA:3.30.70.1430 43 142 7.4E-23 T 23-04-2016 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 Pfam PF00873 AcrB/AcrD/AcrF family 6 1028 5.8E-298 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 SUPERFAMILY SSF82866 807 1031 1.57E-57 T 23-04-2016 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 SUPERFAMILY SSF82693 161 192 6.02E-13 T 23-04-2016 NIDE_RS14855 0a0d758e58ea6010452c004d91875303 1043 SUPERFAMILY SSF82693 278 336 6.02E-13 T 23-04-2016 NIDE_RS21040 be5f4d485d99cb93e8c3574e88f57edf 287 SUPERFAMILY SSF49464 185 236 9.42E-11 T 23-04-2016 IPR008969 Carboxypeptidase-like, regulatory domain NIDE_RS21040 be5f4d485d99cb93e8c3574e88f57edf 287 Gene3D G3DSA:2.60.40.1120 200 234 1.1E-6 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PANTHER PTHR24093 11 840 1.6E-245 T 23-04-2016 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 Gene3D G3DSA:2.70.150.10 23 58 2.9E-31 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 Gene3D G3DSA:2.70.150.10 112 226 2.9E-31 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PANTHER PTHR24093:SF128 11 840 1.6E-245 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 555 674 2.2E-27 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 86 346 1.2E-33 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 327 333 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 SMART SM00831 6 79 2.0E-10 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 Gene3D G3DSA:1.20.1110.10 59 111 5.8E-77 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 Gene3D G3DSA:1.20.1110.10 555 834 5.8E-77 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 Pfam PF00689 Cation transporting ATPase, C-terminus 669 830 4.1E-17 T 23-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PRINTS PR01836 Magnesium-transporting ATPase signature 745 766 2.3E-43 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PRINTS PR01836 Magnesium-transporting ATPase signature 694 707 2.3E-43 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PRINTS PR01836 Magnesium-transporting ATPase signature 662 673 2.3E-43 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PRINTS PR01836 Magnesium-transporting ATPase signature 359 372 2.3E-43 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PRINTS PR01836 Magnesium-transporting ATPase signature 238 254 2.3E-43 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PRINTS PR01836 Magnesium-transporting ATPase signature 255 274 2.3E-43 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PRINTS PR01836 Magnesium-transporting ATPase signature 644 659 2.3E-43 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PRINTS PR01836 Magnesium-transporting ATPase signature 794 815 2.3E-43 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 PRINTS PR01836 Magnesium-transporting ATPase signature 714 730 2.3E-43 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 SUPERFAMILY SSF81653 117 225 1.05E-26 T 23-04-2016 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 Pfam PF00122 E1-E2 ATPase 85 316 2.2E-59 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 13 836 6.6E-235 T 23-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 SUPERFAMILY SSF81665 226 319 2.62E-88 T 23-04-2016 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 SUPERFAMILY SSF81665 6 117 2.62E-88 T 23-04-2016 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 SUPERFAMILY SSF81665 635 836 2.62E-88 T 23-04-2016 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 SUPERFAMILY SSF56784 323 343 6.48E-43 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 SUPERFAMILY SSF56784 443 686 6.48E-43 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 Pfam PF00702 haloacid dehalogenase-like hydrolase 321 600 9.1E-24 T 23-04-2016 NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 Pfam PF00690 Cation transporter/ATPase, N-terminus 8 74 1.0E-8 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal NIDE_RS17150 95653f304e99ba9fd7702208e310736d 841 Gene3D G3DSA:3.40.1110.10 316 493 1.9E-25 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SUPERFAMILY SSF48452 55 287 3.92E-30 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SUPERFAMILY SSF48452 250 554 2.53E-41 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 Pfam PF14559 Tetratricopeptide repeat 327 384 1.3E-5 T 23-04-2016 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 347 380 0.0035 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 518 551 1.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 449 483 12.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 279 312 0.061 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 176 209 0.13 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 313 346 11.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 142 175 7.7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 40 73 18.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 245 278 370.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 210 244 120.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 381 414 0.0024 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 108 141 0.027 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00028 415 448 0.054 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 Pfam PF13432 Tetratricopeptide repeat 118 176 3.8E-7 T 23-04-2016 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 Pfam PF13432 Tetratricopeptide repeat 253 310 7.6E-7 T 23-04-2016 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 Pfam PF13432 Tetratricopeptide repeat 420 482 2.8E-5 T 23-04-2016 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 Pfam PF13432 Tetratricopeptide repeat 490 551 9.2E-4 T 23-04-2016 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 Pfam PF13432 Tetratricopeptide repeat 180 237 6.7E-5 T 23-04-2016 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 Gene3D G3DSA:1.25.40.10 377 558 2.8E-42 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 PANTHER PTHR23083 38 555 3.6E-96 T 23-04-2016 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 Gene3D G3DSA:1.25.40.10 299 376 4.9E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00671 449 481 84.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00671 347 378 180.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00671 108 139 32.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 SMART SM00671 176 207 37.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS15740 986cebc07a46a7e334c97064d4e16db0 592 Gene3D G3DSA:1.25.40.10 32 298 3.1E-50 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS09355 4ec53ff65d8730e7f06f0589237fb614 266 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 23-04-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 NIDE_RS09355 4ec53ff65d8730e7f06f0589237fb614 266 PANTHER PTHR10314 74 130 5.4E-24 T 23-04-2016 NIDE_RS09355 4ec53ff65d8730e7f06f0589237fb614 266 PANTHER PTHR10314 1 51 5.4E-24 T 23-04-2016 NIDE_RS09355 4ec53ff65d8730e7f06f0589237fb614 266 Gene3D G3DSA:3.20.20.70 1 263 2.1E-101 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS09355 4ec53ff65d8730e7f06f0589237fb614 266 SUPERFAMILY SSF51366 1 248 1.88E-88 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 NIDE_RS09355 4ec53ff65d8730e7f06f0589237fb614 266 Pfam PF00290 Tryptophan synthase alpha chain 8 263 7.4E-91 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 NIDE_RS09355 4ec53ff65d8730e7f06f0589237fb614 266 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 9 260 1.5E-77 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 NIDE_RS09355 4ec53ff65d8730e7f06f0589237fb614 266 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 262 35.564 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 NIDE_RS09355 4ec53ff65d8730e7f06f0589237fb614 266 PANTHER PTHR10314:SF4 74 130 5.4E-24 T 23-04-2016 NIDE_RS09355 4ec53ff65d8730e7f06f0589237fb614 266 PANTHER PTHR10314:SF4 1 51 5.4E-24 T 23-04-2016 NIDE_RS17185 d0765ec389824d32a83312a156fd26f4 239 SUPERFAMILY SSF53098 89 224 3.34E-28 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS17185 d0765ec389824d32a83312a156fd26f4 239 PANTHER PTHR24559 8 225 3.5E-102 T 23-04-2016 NIDE_RS17185 d0765ec389824d32a83312a156fd26f4 239 Pfam PF13683 Integrase core domain 154 219 1.8E-27 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS17185 d0765ec389824d32a83312a156fd26f4 239 Gene3D G3DSA:3.30.420.10 119 220 1.8E-25 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS17185 d0765ec389824d32a83312a156fd26f4 239 Pfam PF13276 HTH-like domain 27 79 7.6E-10 T 23-04-2016 IPR025948 HTH-like domain NIDE_RS17185 d0765ec389824d32a83312a156fd26f4 239 PANTHER PTHR24559:SF185 8 225 3.5E-102 T 23-04-2016 NIDE_RS04745 9ae4d39cc7bead9ee86ad7146b125a07 377 PANTHER PTHR30040:SF2 34 377 5.3E-83 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 NIDE_RS04745 9ae4d39cc7bead9ee86ad7146b125a07 377 Pfam PF02424 ApbE family 75 352 1.1E-73 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 NIDE_RS04745 9ae4d39cc7bead9ee86ad7146b125a07 377 PIRSF PIRSF006268 38 375 2.0E-91 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 NIDE_RS04745 9ae4d39cc7bead9ee86ad7146b125a07 377 PANTHER PTHR30040 34 377 5.3E-83 T 23-04-2016 NIDE_RS04745 9ae4d39cc7bead9ee86ad7146b125a07 377 SUPERFAMILY SSF143631 68 369 1.1E-86 T 23-04-2016 IPR003374 ApbE-like domain NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 Gene3D G3DSA:3.40.50.720 1 105 7.1E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 SUPERFAMILY SSF143548 318 448 2.88E-40 T 23-04-2016 IPR029009 Allosteric substrate binding domain NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 2 525 2.4E-204 T 23-04-2016 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|UniPathway: UPA00135 NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 SUPERFAMILY SSF55021 444 522 1.87E-16 T 23-04-2016 NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 SUPERFAMILY SSF51735 99 281 2.05E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 142 169 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 PANTHER PTHR10996:SF20 1 356 4.2E-169 T 23-04-2016 NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 3 312 9.8E-41 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 SUPERFAMILY SSF52283 15 127 2.27E-40 T 23-04-2016 NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 Pfam PF01842 ACT domain 453 512 3.3E-9 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 Gene3D G3DSA:3.40.50.720 106 282 1.7E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 Gene3D G3DSA:3.30.70.260 446 523 2.6E-19 T 23-04-2016 NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 190 212 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 105 280 2.3E-61 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 Gene3D G3DSA:3.30.1330.90 317 445 2.2E-48 T 23-04-2016 IPR029009 Allosteric substrate binding domain NIDE_RS15755 8a11329f9d3d938064bff4772daee8ad 530 PANTHER PTHR10996 1 356 4.2E-169 T 23-04-2016 NIDE_RS11725 6e11ec60da254b039857e762550e4173 540 Hamap MF_01227 CTP synthase [pyrG]. 9 537 52.226 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 NIDE_RS11725 6e11ec60da254b039857e762550e4173 540 PANTHER PTHR11550 2 537 0.0 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 NIDE_RS11725 6e11ec60da254b039857e762550e4173 540 SUPERFAMILY SSF52317 294 536 8.62E-80 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS11725 6e11ec60da254b039857e762550e4173 540 Gene3D G3DSA:3.40.50.300 6 290 9.5E-134 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11725 6e11ec60da254b039857e762550e4173 540 TIGRFAM TIGR00337 PyrG: CTP synthase 8 532 6.1E-254 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 NIDE_RS11725 6e11ec60da254b039857e762550e4173 540 Pfam PF00117 Glutamine amidotransferase class-I 307 530 1.1E-55 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 NIDE_RS11725 6e11ec60da254b039857e762550e4173 540 SUPERFAMILY SSF52540 9 274 7.25E-122 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11725 6e11ec60da254b039857e762550e4173 540 Gene3D G3DSA:3.40.50.880 293 536 1.7E-98 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS11725 6e11ec60da254b039857e762550e4173 540 Pfam PF06418 CTP synthase N-terminus 10 272 2.0E-125 T 23-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 NIDE_RS17085 aa7f7cd6ab38d4673aa5fe0c60ba8f37 226 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 89 117 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 NIDE_RS17085 aa7f7cd6ab38d4673aa5fe0c60ba8f37 226 SUPERFAMILY SSF53955 67 190 3.44E-44 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS17085 aa7f7cd6ab38d4673aa5fe0c60ba8f37 226 PANTHER PTHR21666 51 191 4.5E-42 T 23-04-2016 NIDE_RS17085 aa7f7cd6ab38d4673aa5fe0c60ba8f37 226 Pfam PF01464 Transglycosylase SLT domain 73 171 4.9E-29 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 NIDE_RS17085 aa7f7cd6ab38d4673aa5fe0c60ba8f37 226 Gene3D G3DSA:1.10.530.10 67 190 1.9E-48 T 23-04-2016 NIDE_RS17085 aa7f7cd6ab38d4673aa5fe0c60ba8f37 226 Pfam PF13511 Domain of unknown function (DUF4124) 15 49 5.2E-6 T 23-04-2016 IPR025392 Domain of unknown function DUF4124 NIDE_RS20670 212ba00a2ecf1ca186b28cbaae5d8ed3 444 PANTHER PTHR30408:SF2 16 231 8.8E-23 T 23-04-2016 NIDE_RS20670 212ba00a2ecf1ca186b28cbaae5d8ed3 444 PANTHER PTHR30408 16 231 8.8E-23 T 23-04-2016 NIDE_RS20670 212ba00a2ecf1ca186b28cbaae5d8ed3 444 SUPERFAMILY SSF116734 15 215 4.25E-36 T 23-04-2016 NIDE_RS20670 212ba00a2ecf1ca186b28cbaae5d8ed3 444 Pfam PF01420 Type I restriction modification DNA specificity domain 78 184 3.6E-6 T 23-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 NIDE_RS20670 212ba00a2ecf1ca186b28cbaae5d8ed3 444 Pfam PF01420 Type I restriction modification DNA specificity domain 298 413 2.2E-7 T 23-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 NIDE_RS20670 212ba00a2ecf1ca186b28cbaae5d8ed3 444 SUPERFAMILY SSF116734 218 436 1.96E-30 T 23-04-2016 NIDE_RS11605 b6c692bf8192fe11267a972a5e128dac 343 Gene3D G3DSA:3.40.190.10 182 247 1.2E-5 T 23-04-2016 NIDE_RS11605 b6c692bf8192fe11267a972a5e128dac 343 Gene3D G3DSA:3.40.190.10 268 310 2.5E-13 T 23-04-2016 NIDE_RS11605 b6c692bf8192fe11267a972a5e128dac 343 Gene3D G3DSA:3.40.190.10 56 146 2.5E-13 T 23-04-2016 NIDE_RS11605 b6c692bf8192fe11267a972a5e128dac 343 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 63 307 1.1E-16 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIDE_RS11605 b6c692bf8192fe11267a972a5e128dac 343 SUPERFAMILY SSF53850 55 309 2.06E-20 T 23-04-2016 NIDE_RS11605 b6c692bf8192fe11267a972a5e128dac 343 SMART SM00062 47 309 0.0063 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIDE_RS17370 3e5cc3005245a141fe820a2537fbcb58 311 Pfam PF01458 Uncharacterized protein family (UPF0051) 86 308 1.7E-35 T 23-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 NIDE_RS17370 3e5cc3005245a141fe820a2537fbcb58 311 PANTHER PTHR30508:SF5 46 310 1.5E-66 T 23-04-2016 NIDE_RS17370 3e5cc3005245a141fe820a2537fbcb58 311 PANTHER PTHR30508 46 310 1.5E-66 T 23-04-2016 NIDE_RS17370 3e5cc3005245a141fe820a2537fbcb58 311 SUPERFAMILY SSF101960 59 310 2.22E-43 T 23-04-2016 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 Gene3D G3DSA:1.20.59.10 2 87 6.7E-20 T 23-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 SMART SM00830 9 90 1.0E-23 T 23-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 PANTHER PTHR21022 1 355 6.4E-133 T 23-04-2016 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 Pfam PF00800 Prephenate dehydratase 92 267 6.4E-63 T 23-04-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 SUPERFAMILY SSF53850 91 273 1.74E-58 T 23-04-2016 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 TIGRFAM TIGR01807 CM_P2: chorismate mutase 5 80 2.3E-23 T 23-04-2016 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626|UniPathway: UPA00120|UniPathway: UPA00121 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 SUPERFAMILY SSF48600 3 93 1.39E-18 T 23-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 PIRSF PIRSF001500 1 358 2.9E-132 T 23-04-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 PANTHER PTHR21022:SF0 1 355 6.4E-133 T 23-04-2016 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 Pfam PF01817 Chorismate mutase type II 9 87 9.0E-22 T 23-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 Gene3D G3DSA:3.40.190.10 90 177 3.7E-30 T 23-04-2016 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 304 311 - T 23-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 Pfam PF01842 ACT domain 278 341 4.3E-12 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 Gene3D G3DSA:3.40.190.10 178 254 1.5E-26 T 23-04-2016 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 SUPERFAMILY SSF55021 261 355 2.02E-31 T 23-04-2016 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 242 264 - T 23-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 NIDE_RS01935 655409bfa0908ac2554af42d424aa653 358 Gene3D G3DSA:3.30.70.260 270 357 5.5E-36 T 23-04-2016 NIDE_RS05575 aa91a1f6d080c143b89d11b10500c5b1 274 PANTHER PTHR30570 38 271 9.0E-22 T 23-04-2016 NIDE_RS05575 aa91a1f6d080c143b89d11b10500c5b1 274 Gene3D G3DSA:3.40.190.10 96 231 2.0E-21 T 23-04-2016 NIDE_RS05575 aa91a1f6d080c143b89d11b10500c5b1 274 PANTHER PTHR30570:SF1 38 271 9.0E-22 T 23-04-2016 NIDE_RS05575 aa91a1f6d080c143b89d11b10500c5b1 274 SUPERFAMILY SSF53850 20 269 3.22E-36 T 23-04-2016 NIDE_RS05575 aa91a1f6d080c143b89d11b10500c5b1 274 Pfam PF12849 PBP superfamily domain 21 255 3.7E-13 T 23-04-2016 IPR024370 PBP domain NIDE_RS02530 3767ba19911b41125e0c39a7f8ddb7d1 649 Gene3D G3DSA:2.40.170.20 160 631 7.9E-64 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS02530 3767ba19911b41125e0c39a7f8ddb7d1 649 Gene3D G3DSA:2.170.130.10 35 159 1.4E-29 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02530 3767ba19911b41125e0c39a7f8ddb7d1 649 PANTHER PTHR32552 35 426 2.0E-38 T 23-04-2016 NIDE_RS02530 3767ba19911b41125e0c39a7f8ddb7d1 649 PANTHER PTHR32552 445 649 2.0E-38 T 23-04-2016 NIDE_RS02530 3767ba19911b41125e0c39a7f8ddb7d1 649 PANTHER PTHR32552:SF15 35 426 2.0E-38 T 23-04-2016 NIDE_RS02530 3767ba19911b41125e0c39a7f8ddb7d1 649 PANTHER PTHR32552:SF15 445 649 2.0E-38 T 23-04-2016 NIDE_RS02530 3767ba19911b41125e0c39a7f8ddb7d1 649 Pfam PF00593 TonB dependent receptor 394 627 1.9E-19 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS02530 3767ba19911b41125e0c39a7f8ddb7d1 649 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 157 5.2E-19 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02530 3767ba19911b41125e0c39a7f8ddb7d1 649 SUPERFAMILY SSF56935 34 630 3.43E-96 T 23-04-2016 NIDE_RS13195 6106bbae06c939a7811d2ab2e7560ff0 281 Gene3D G3DSA:3.40.50.720 2 153 3.3E-19 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13195 6106bbae06c939a7811d2ab2e7560ff0 281 PANTHER PTHR10366 1 272 1.4E-31 T 23-04-2016 NIDE_RS13195 6106bbae06c939a7811d2ab2e7560ff0 281 SUPERFAMILY SSF51735 1 275 1.64E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13195 6106bbae06c939a7811d2ab2e7560ff0 281 Gene3D G3DSA:3.90.25.10 154 277 4.8E-23 T 23-04-2016 NIDE_RS13195 6106bbae06c939a7811d2ab2e7560ff0 281 Pfam PF01370 NAD dependent epimerase/dehydratase family 1 195 6.0E-21 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 NIDE_RS13195 6106bbae06c939a7811d2ab2e7560ff0 281 PANTHER PTHR10366:SF466 1 272 1.4E-31 T 23-04-2016 NIDE_RS02060 c75b5e68bbe4272f19fc6fd4bde30719 292 Gene3D G3DSA:3.40.50.150 66 265 1.5E-57 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02060 c75b5e68bbe4272f19fc6fd4bde30719 292 SUPERFAMILY SSF53335 4 259 2.48E-62 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02060 c75b5e68bbe4272f19fc6fd4bde30719 292 Pfam PF08704 tRNA methyltransferase complex GCD14 subunit 62 241 8.3E-32 T 23-04-2016 IPR014816 tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14 GO:0016429|GO:0030488|GO:0031515 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829 NIDE_RS02060 c75b5e68bbe4272f19fc6fd4bde30719 292 Gene3D G3DSA:3.10.330.20 3 64 2.9E-21 T 23-04-2016 NIDE_RS02060 c75b5e68bbe4272f19fc6fd4bde30719 292 PIRSF PIRSF017269 1 269 6.9E-77 T 23-04-2016 IPR014816 tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14 GO:0016429|GO:0030488|GO:0031515 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829 NIDE_RS02060 c75b5e68bbe4272f19fc6fd4bde30719 292 Pfam PF14801 tRNA methyltransferase complex GCD14 subunit N-term 4 51 7.5E-15 T 23-04-2016 NIDE_RS02060 c75b5e68bbe4272f19fc6fd4bde30719 292 PANTHER PTHR12133 5 282 5.3E-76 T 23-04-2016 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 354 422 3.4E-31 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 444 32.138 T 23-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 Gene3D G3DSA:3.40.50.300 108 274 6.6E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 ProSitePatterns PS01008 DnaA protein signature. 403 422 - T 23-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 Pfam PF11638 DnaA N-terminal domain 1 60 3.1E-15 T 23-04-2016 IPR024633 DnaA N-terminal domain NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 PANTHER PTHR30050:SF2 1 446 3.2E-209 T 23-04-2016 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 SUPERFAMILY SSF48295 340 443 9.42E-34 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 SUPERFAMILY SSF52540 110 321 1.44E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 Gene3D G3DSA:1.10.1750.10 344 443 1.7E-38 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 2 443 9.8E-172 T 23-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 SMART SM00760 353 422 5.4E-40 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 Pfam PF00308 Bacterial dnaA protein 111 327 2.5E-94 T 23-04-2016 IPR013317 Chromosomal replication initiator protein DnaA NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 Gene3D G3DSA:1.10.8.60 276 343 3.8E-28 T 23-04-2016 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 PANTHER PTHR30050 1 446 3.2E-209 T 23-04-2016 NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 207 221 3.2E-51 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 403 422 3.2E-51 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 175 189 3.2E-51 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 241 268 3.2E-51 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 144 164 3.2E-51 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like NIDE_RS00005 f802b120adba63c6d2a91ec6cb722048 446 SMART SM00382 143 270 1.8E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Gene3D G3DSA:3.10.560.10 550 611 5.9E-9 T 23-04-2016 NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Gene3D G3DSA:3.10.560.10 399 461 1.8E-13 T 23-04-2016 NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Gene3D G3DSA:3.10.560.10 329 383 1.3E-11 T 23-04-2016 NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Gene3D G3DSA:3.10.560.10 476 535 7.5E-14 T 23-04-2016 NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Gene3D G3DSA:3.10.560.10 180 234 6.2E-9 T 23-04-2016 NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Gene3D G3DSA:3.10.560.10 249 325 1.6E-13 T 23-04-2016 NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Pfam PF10531 SLBB domain 410 454 5.7E-13 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Pfam PF10531 SLBB domain 261 311 2.2E-12 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Pfam PF10531 SLBB domain 558 606 8.2E-10 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Pfam PF10531 SLBB domain 483 530 1.5E-13 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Pfam PF10531 SLBB domain 110 156 3.8E-10 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Pfam PF10531 SLBB domain 184 235 4.6E-7 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Pfam PF10531 SLBB domain 334 384 3.3E-9 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Pfam PF02563 Polysaccharide biosynthesis/export protein 31 104 1.3E-19 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Gene3D G3DSA:3.30.1950.10 38 100 7.9E-17 T 23-04-2016 NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 PANTHER PTHR33619 1 488 3.1E-53 T 23-04-2016 NIDE_RS12285 3c4b78cb1bb4441611967701114559d6 630 Gene3D G3DSA:3.10.560.10 101 166 6.8E-11 T 23-04-2016 NIDE_RS04075 4cf74fdb92a43f329fd74caf146abe97 386 PIRSF PIRSF000390 1 384 7.1E-114 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS04075 4cf74fdb92a43f329fd74caf146abe97 386 SUPERFAMILY SSF53383 6 381 5.7E-118 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS04075 4cf74fdb92a43f329fd74caf146abe97 386 PANTHER PTHR30244 1 384 1.4E-153 T 23-04-2016 NIDE_RS04075 4cf74fdb92a43f329fd74caf146abe97 386 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 378 8.0E-134 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS04075 4cf74fdb92a43f329fd74caf146abe97 386 Gene3D G3DSA:3.90.1150.10 258 383 3.1E-40 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS04075 4cf74fdb92a43f329fd74caf146abe97 386 PANTHER PTHR30244:SF3 1 384 1.4E-153 T 23-04-2016 NIDE_RS04075 4cf74fdb92a43f329fd74caf146abe97 386 Gene3D G3DSA:3.40.640.10 6 253 7.6E-91 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS13880 984cf8e957d3c7d84a4cda472746d7bc 347 PANTHER PTHR30160 1 340 5.1E-65 T 23-04-2016 NIDE_RS13880 984cf8e957d3c7d84a4cda472746d7bc 347 Gene3D G3DSA:3.40.50.2000 170 340 1.8E-57 T 23-04-2016 NIDE_RS13880 984cf8e957d3c7d84a4cda472746d7bc 347 SUPERFAMILY SSF53756 6 340 5.55E-93 T 23-04-2016 NIDE_RS13880 984cf8e957d3c7d84a4cda472746d7bc 347 PANTHER PTHR30160:SF7 1 340 5.1E-65 T 23-04-2016 NIDE_RS13880 984cf8e957d3c7d84a4cda472746d7bc 347 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 75 314 6.0E-48 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 NIDE_RS13880 984cf8e957d3c7d84a4cda472746d7bc 347 Gene3D G3DSA:3.40.50.2000 6 149 2.1E-36 T 23-04-2016 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SMART SM00091 147 213 5.5E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SMART SM00091 15 85 30.0 T 23-04-2016 IPR000014 PAS domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SMART SM00091 268 334 1.5E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Gene3D G3DSA:3.40.50.2300 814 936 2.3E-46 T 23-04-2016 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SUPERFAMILY SSF55785 28 143 9.42E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Gene3D G3DSA:3.30.450.20 13 134 1.1E-7 T 23-04-2016 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 PRINTS PR00344 Bacterial sensor protein C-terminal signature 589 599 1.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 PRINTS PR00344 Bacterial sensor protein C-terminal signature 630 643 1.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 585 1.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 PRINTS PR00344 Bacterial sensor protein C-terminal signature 606 624 1.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Gene3D G3DSA:3.30.565.10 484 647 1.5E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Pfam PF13426 PAS domain 278 382 8.9E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SUPERFAMILY SSF55785 158 272 4.61E-27 T 23-04-2016 IPR000014 PAS domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SUPERFAMILY SSF55785 280 391 1.95E-24 T 23-04-2016 IPR000014 PAS domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Pfam PF00989 PAS fold 148 260 2.9E-14 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Gene3D G3DSA:3.40.50.2300 665 793 9.9E-31 T 23-04-2016 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Gene3D G3DSA:1.10.287.130 413 479 2.9E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SMART SM00387 530 646 1.2E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SUPERFAMILY SSF55874 472 642 4.32E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Pfam PF00072 Response regulator receiver domain 668 784 3.1E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Pfam PF00072 Response regulator receiver domain 818 929 3.6E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SUPERFAMILY SSF47384 404 484 1.08E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SMART SM00448 815 929 1.7E-39 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SMART SM00448 666 784 5.5E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Gene3D G3DSA:3.30.450.20 135 261 2.6E-28 T 23-04-2016 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Gene3D G3DSA:3.30.450.20 264 382 6.8E-24 T 23-04-2016 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SUPERFAMILY SSF52172 816 941 7.12E-41 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SMART SM00388 418 483 2.4E-26 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Pfam PF00512 His Kinase A (phospho-acceptor) domain 418 483 4.7E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 PANTHER PTHR24423:SF382 814 937 8.5E-194 T 23-04-2016 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 PANTHER PTHR24423:SF382 131 670 8.5E-194 T 23-04-2016 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 141 8.1E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 266 391 2.2E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 144 268 1.5E-30 T 23-04-2016 IPR000014 PAS domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 530 644 3.3E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 SUPERFAMILY SSF52172 657 793 1.35E-30 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 PANTHER PTHR24423 814 937 8.5E-194 T 23-04-2016 NIDE_RS20190 9018c59a73a6e3fa0129a29a633a1e54 954 PANTHER PTHR24423 131 670 8.5E-194 T 23-04-2016 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 TIGRFAM TIGR00436 era: GTP-binding protein Era 5 277 5.0E-82 T 23-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 Hamap MF_00367 GTPase Era [era]. 1 294 34.895 T 23-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 PANTHER PTHR11649 2 294 2.0E-111 T 23-04-2016 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 Pfam PF07650 KH domain 207 283 1.6E-19 T 23-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 PANTHER PTHR11649:SF3 2 294 2.0E-111 T 23-04-2016 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 165 1.3E-26 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 SUPERFAMILY SSF54814 180 294 1.11E-39 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 Pfam PF01926 50S ribosome-binding GTPase 6 124 3.1E-24 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 SUPERFAMILY SSF52540 6 206 1.93E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 PRINTS PR00449 Transforming protein P21 ras signature 114 127 5.1E-7 T 23-04-2016 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 PRINTS PR00449 Transforming protein P21 ras signature 149 171 5.1E-7 T 23-04-2016 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 PRINTS PR00449 Transforming protein P21 ras signature 4 25 5.1E-7 T 23-04-2016 NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 Gene3D G3DSA:3.40.50.300 5 190 2.0E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13320 8e2d72f2d09c3a51eb3d8eb75be1aeb4 294 Gene3D G3DSA:3.30.300.20 191 290 5.2E-38 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta NIDE_RS20770 3db9613969d8a50a772e5db4f9b1a8df 343 Pfam PF13177 DNA polymerase III, delta subunit 9 172 4.7E-51 T 23-04-2016 NIDE_RS20770 3db9613969d8a50a772e5db4f9b1a8df 343 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 235 329 1.3E-12 T 23-04-2016 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS20770 3db9613969d8a50a772e5db4f9b1a8df 343 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 15 208 1.5E-59 T 23-04-2016 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS20770 3db9613969d8a50a772e5db4f9b1a8df 343 SUPERFAMILY SSF52540 3 210 4.44E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20770 3db9613969d8a50a772e5db4f9b1a8df 343 PANTHER PTHR11669:SF8 1 330 6.6E-57 T 23-04-2016 NIDE_RS20770 3db9613969d8a50a772e5db4f9b1a8df 343 Gene3D G3DSA:3.40.50.300 3 172 1.0E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20770 3db9613969d8a50a772e5db4f9b1a8df 343 PANTHER PTHR11669 1 330 6.6E-57 T 23-04-2016 NIDE_RS20770 3db9613969d8a50a772e5db4f9b1a8df 343 Gene3D G3DSA:1.20.272.10 238 335 5.9E-8 T 23-04-2016 NIDE_RS20770 3db9613969d8a50a772e5db4f9b1a8df 343 SUPERFAMILY SSF48019 248 335 9.07E-5 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 NIDE_RS16395 b54672a7b83bc3d0f612f83dd361ea7d 108 PANTHER PTHR10293:SF44 1 104 5.0E-26 T 23-04-2016 NIDE_RS16395 b54672a7b83bc3d0f612f83dd361ea7d 108 Pfam PF00462 Glutaredoxin 18 81 4.0E-15 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 NIDE_RS16395 b54672a7b83bc3d0f612f83dd361ea7d 108 Gene3D G3DSA:3.40.30.10 9 104 1.4E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS16395 b54672a7b83bc3d0f612f83dd361ea7d 108 SUPERFAMILY SSF52833 5 103 4.86E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS16395 b54672a7b83bc3d0f612f83dd361ea7d 108 PANTHER PTHR10293 1 104 5.0E-26 T 23-04-2016 IPR004480 Monothiol glutaredoxin-related NIDE_RS00260 a1dfefbcfc084c06acca3b0118df98ac 116 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 4 116 3.9E-40 T 23-04-2016 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394 NIDE_RS00260 a1dfefbcfc084c06acca3b0118df98ac 116 Gene3D G3DSA:2.60.40.180 2 116 8.5E-39 T 23-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily NIDE_RS00260 a1dfefbcfc084c06acca3b0118df98ac 116 Pfam PF00576 HIUase/Transthyretin family 6 115 2.5E-36 T 23-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily NIDE_RS00260 a1dfefbcfc084c06acca3b0118df98ac 116 ProSitePatterns PS00768 Transthyretin signature 1. 9 24 - T 23-04-2016 IPR023418 Transthyretin, thyroxine binding site NIDE_RS00260 a1dfefbcfc084c06acca3b0118df98ac 116 PANTHER PTHR10395:SF7 1 116 1.2E-43 T 23-04-2016 NIDE_RS00260 a1dfefbcfc084c06acca3b0118df98ac 116 PANTHER PTHR10395 1 116 1.2E-43 T 23-04-2016 NIDE_RS00260 a1dfefbcfc084c06acca3b0118df98ac 116 SUPERFAMILY SSF49472 3 116 6.41E-39 T 23-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily NIDE_RS00260 a1dfefbcfc084c06acca3b0118df98ac 116 ProSitePatterns PS00769 Transthyretin signature 2. 99 111 - T 23-04-2016 IPR023419 Transthyretin, conserved site NIDE_RS00260 a1dfefbcfc084c06acca3b0118df98ac 116 PRINTS PR00189 Transthyretin signature 65 94 1.9E-5 T 23-04-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase NIDE_RS00260 a1dfefbcfc084c06acca3b0118df98ac 116 PRINTS PR00189 Transthyretin signature 5 25 1.9E-5 T 23-04-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase NIDE_RS01975 0bb3ec315c2f77cc2c5d610849a99516 299 Pfam PF01343 Peptidase family S49 105 253 2.0E-53 T 23-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 NIDE_RS01975 0bb3ec315c2f77cc2c5d610849a99516 299 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 48 253 1.4E-75 T 23-04-2016 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 NIDE_RS01975 0bb3ec315c2f77cc2c5d610849a99516 299 SUPERFAMILY SSF52096 40 152 9.53E-42 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS01975 0bb3ec315c2f77cc2c5d610849a99516 299 SUPERFAMILY SSF52096 181 243 9.53E-42 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS01975 0bb3ec315c2f77cc2c5d610849a99516 299 PANTHER PTHR33209 42 282 6.4E-82 T 23-04-2016 NIDE_RS01975 0bb3ec315c2f77cc2c5d610849a99516 299 Gene3D G3DSA:3.90.226.10 182 260 7.0E-57 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS01975 0bb3ec315c2f77cc2c5d610849a99516 299 Gene3D G3DSA:3.90.226.10 20 144 7.0E-57 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS12475 09988d2951469d6b55ad7819ca7b61f4 715 Gene3D G3DSA:2.40.50.100 550 578 4.5E-5 T 23-04-2016 NIDE_RS12475 09988d2951469d6b55ad7819ca7b61f4 715 Gene3D G3DSA:2.40.50.100 463 495 4.5E-5 T 23-04-2016 NIDE_RS12475 09988d2951469d6b55ad7819ca7b61f4 715 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 463 613 7.6E-8 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS12475 09988d2951469d6b55ad7819ca7b61f4 715 PANTHER PTHR13325:SF4 38 568 4.3E-75 T 23-04-2016 NIDE_RS12475 09988d2951469d6b55ad7819ca7b61f4 715 SUPERFAMILY SSF111369 461 597 8.11E-6 T 23-04-2016 NIDE_RS12475 09988d2951469d6b55ad7819ca7b61f4 715 PANTHER PTHR13325 38 568 4.3E-75 T 23-04-2016 IPR001193 Membrane-bound transcription factor site-2 protease GO:0004222|GO:0006508|GO:0016020 NIDE_RS06120 b8e5f17a6d08b5074e64291469340b90 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 5.9E-54 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 NIDE_RS06120 b8e5f17a6d08b5074e64291469340b90 122 SUPERFAMILY SSF50193 1 122 4.97E-51 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 NIDE_RS06120 b8e5f17a6d08b5074e64291469340b90 122 Gene3D G3DSA:2.40.150.20 1 122 1.4E-53 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 NIDE_RS06120 b8e5f17a6d08b5074e64291469340b90 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.686 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 NIDE_RS06120 b8e5f17a6d08b5074e64291469340b90 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.3E-56 T 23-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 NIDE_RS06120 b8e5f17a6d08b5074e64291469340b90 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 23-04-2016 IPR019972 Ribosomal protein L14P, conserved site NIDE_RS06120 b8e5f17a6d08b5074e64291469340b90 122 SMART SM01374 1 122 2.0E-86 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 NIDE_RS06120 b8e5f17a6d08b5074e64291469340b90 122 PANTHER PTHR11761 1 122 3.5E-71 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 SUPERFAMILY SSF50129 9 201 3.35E-60 T 23-04-2016 IPR011032 GroES-like NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 Gene3D G3DSA:3.40.50.720 198 317 1.2E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 SMART SM00829 21 372 6.8E-5 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 36 132 2.0E-24 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 Pfam PF00107 Zinc-binding dehydrogenase 205 322 2.9E-29 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 PANTHER PTHR11695 24 113 2.8E-126 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 PANTHER PTHR11695 134 374 2.8E-126 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 PANTHER PTHR11695:SF571 24 113 2.8E-126 T 23-04-2016 NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 PANTHER PTHR11695:SF571 134 374 2.8E-126 T 23-04-2016 NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 Gene3D G3DSA:3.90.180.10 7 197 3.4E-54 T 23-04-2016 IPR011032 GroES-like NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 69 83 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 NIDE_RS00115 68dd592b84f24e53088714364e3fc9a8 376 SUPERFAMILY SSF51735 168 340 1.65E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS06050 982dd23df9febfb3562475ed892323f9 157 PANTHER PTHR11205 8 157 1.7E-86 T 23-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 NIDE_RS06050 982dd23df9febfb3562475ed892323f9 157 Gene3D G3DSA:1.10.455.10 9 157 7.4E-65 T 23-04-2016 IPR023798 Ribosomal protein S7 domain NIDE_RS06050 982dd23df9febfb3562475ed892323f9 157 PIRSF PIRSF002122 3 157 7.0E-58 T 23-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 NIDE_RS06050 982dd23df9febfb3562475ed892323f9 157 SUPERFAMILY SSF47973 7 150 5.89E-58 T 23-04-2016 IPR023798 Ribosomal protein S7 domain NIDE_RS06050 982dd23df9febfb3562475ed892323f9 157 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 23-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 NIDE_RS06050 982dd23df9febfb3562475ed892323f9 157 Pfam PF00177 Ribosomal protein S7p/S5e 1 150 2.7E-63 T 23-04-2016 IPR023798 Ribosomal protein S7 domain NIDE_RS06050 982dd23df9febfb3562475ed892323f9 157 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 157 34.3 T 23-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 NIDE_RS06050 982dd23df9febfb3562475ed892323f9 157 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 9 157 1.1E-63 T 23-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 NIDE_RS18855 0a4e654ae2333a481885d56aad246bc6 166 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 16 165 23.222 T 23-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 NIDE_RS18855 0a4e654ae2333a481885d56aad246bc6 166 Gene3D G3DSA:2.30.30.180 100 160 1.8E-11 T 23-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal NIDE_RS18855 0a4e654ae2333a481885d56aad246bc6 166 Pfam PF02576 Putative ribosome maturation factor RimP 22 160 1.6E-38 T 23-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 NIDE_RS18855 0a4e654ae2333a481885d56aad246bc6 166 Gene3D G3DSA:3.30.300.70 15 90 1.2E-24 T 23-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal NIDE_RS18855 0a4e654ae2333a481885d56aad246bc6 166 SUPERFAMILY SSF75420 14 93 7.98E-23 T 23-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal NIDE_RS18855 0a4e654ae2333a481885d56aad246bc6 166 PANTHER PTHR33867 10 166 3.9E-45 T 23-04-2016 NIDE_RS18855 0a4e654ae2333a481885d56aad246bc6 166 PANTHER PTHR33867:SF1 10 166 3.9E-45 T 23-04-2016 NIDE_RS18855 0a4e654ae2333a481885d56aad246bc6 166 SUPERFAMILY SSF74942 94 165 7.85E-13 T 23-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 SUPERFAMILY SSF54534 137 255 5.46E-16 T 23-04-2016 NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 TIGRFAM TIGR00115 tig: trigger factor 12 433 3.1E-110 T 23-04-2016 IPR005215 Trigger factor GO:0015031 NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 Pfam PF05697 Bacterial trigger factor protein (TF) 1 147 7.1E-36 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 PIRSF PIRSF003095 1 440 3.0E-102 T 23-04-2016 IPR005215 Trigger factor GO:0015031 NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 Gene3D G3DSA:3.30.70.1050 1 119 4.6E-29 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 PANTHER PTHR30560 1 440 1.7E-86 T 23-04-2016 NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 Hamap MF_00303 Trigger factor [tig]. 1 440 18.443 T 23-04-2016 IPR005215 Trigger factor GO:0015031 NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 SUPERFAMILY SSF109998 257 438 2.22E-37 T 23-04-2016 IPR027304 Trigger factor/SurA domain NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 SUPERFAMILY SSF102735 1 124 1.96E-29 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 270 433 6.7E-31 T 23-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 NIDE_RS01205 5d401cda76f59127a9fbb4ef19b0f15b 441 Gene3D G3DSA:1.10.3120.10 213 407 9.4E-48 T 23-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 NIDE_RS03315 7f6c2c81faf89737cc0ddd2c3ebbc394 147 Gene3D G3DSA:3.60.90.10 33 146 4.4E-13 T 23-04-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 NIDE_RS03315 7f6c2c81faf89737cc0ddd2c3ebbc394 147 SUPERFAMILY SSF56276 35 146 2.79E-12 T 23-04-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 NIDE_RS03315 7f6c2c81faf89737cc0ddd2c3ebbc394 147 Pfam PF02675 S-adenosylmethionine decarboxylase 41 146 7.3E-18 T 23-04-2016 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 NIDE_RS06905 470b2dd1777b44951d5438218138c08e 138 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 NIDE_RS06905 470b2dd1777b44951d5438218138c08e 138 Gene3D G3DSA:3.30.160.200 4 106 1.1E-32 T 23-04-2016 NIDE_RS06905 470b2dd1777b44951d5438218138c08e 138 PANTHER PTHR11075 8 134 1.3E-33 T 23-04-2016 NIDE_RS06905 470b2dd1777b44951d5438218138c08e 138 Pfam PF00472 RF-1 domain 6 132 8.8E-27 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 NIDE_RS06905 470b2dd1777b44951d5438218138c08e 138 SUPERFAMILY SSF75620 6 100 3.14E-14 T 23-04-2016 NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 Gene3D G3DSA:3.40.50.970 354 556 1.4E-78 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 PANTHER PTHR18968:SF116 1 563 0.0 T 23-04-2016 NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 SUPERFAMILY SSF52518 370 563 3.57E-71 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 Gene3D G3DSA:3.40.50.970 1 177 6.4E-74 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 SUPERFAMILY SSF52518 1 180 3.24E-62 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 PANTHER PTHR18968 1 563 0.0 T 23-04-2016 NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 SUPERFAMILY SSF52467 185 359 1.33E-66 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 1.2E-58 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 Gene3D G3DSA:3.40.50.1220 187 353 4.2E-70 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 3 563 1.2E-251 T 23-04-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 541 5.6E-52 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NIDE_RS04585 5281caec6e743023b2275b81d6c1319c 563 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 328 1.5E-49 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 Pfam PF02321 Outer membrane efflux protein 73 267 1.2E-15 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 Pfam PF02321 Outer membrane efflux protein 300 485 3.0E-19 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 PANTHER PTHR30203 40 497 3.0E-85 T 23-04-2016 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 PANTHER PTHR30203:SF6 40 497 3.0E-85 T 23-04-2016 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 Gene3D G3DSA:1.20.1600.10 155 328 6.5E-69 T 23-04-2016 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 Gene3D G3DSA:1.20.1600.10 59 98 6.5E-69 T 23-04-2016 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 Gene3D G3DSA:1.20.1600.10 374 487 6.5E-69 T 23-04-2016 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 Gene3D G3DSA:2.20.200.10 329 372 8.1E-16 T 23-04-2016 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 Gene3D G3DSA:2.20.200.10 108 154 8.1E-16 T 23-04-2016 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 SUPERFAMILY SSF56954 7 489 2.88E-79 T 23-04-2016 NIDE_RS14805 99719337ef77def151609a7f72c4d6d7 502 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 20 487 1.2E-92 T 23-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1025 1.5E-278 T 23-04-2016 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 Pfam PF00873 AcrB/AcrD/AcrF family 5 1015 3.7E-250 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 SUPERFAMILY SSF82714 709 794 4.71E-19 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 SUPERFAMILY SSF82714 182 263 4.58E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 SUPERFAMILY SSF82866 289 492 8.24E-39 T 23-04-2016 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 PANTHER PTHR32063 2 1017 0.0 T 23-04-2016 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 Gene3D G3DSA:1.10.3850.10 275 493 4.6E-53 T 23-04-2016 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 Gene3D G3DSA:1.10.3850.10 800 1017 4.7E-50 T 23-04-2016 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 PANTHER PTHR32063:SF12 2 1017 0.0 T 23-04-2016 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 SUPERFAMILY SSF82693 143 180 3.4E-14 T 23-04-2016 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 SUPERFAMILY SSF82693 267 324 3.4E-14 T 23-04-2016 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 PRINTS PR00702 Acriflavin resistance protein family signature 465 488 1.1E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.1E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 1.1E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.1E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.1E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.1E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 Gene3D G3DSA:3.30.70.1430 43 126 1.1E-21 T 23-04-2016 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 Gene3D G3DSA:3.30.2090.10 708 794 1.6E-21 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 Gene3D G3DSA:3.30.2090.10 182 263 6.1E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 SUPERFAMILY SSF82693 553 649 1.02E-7 T 23-04-2016 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 SUPERFAMILY SSF82866 794 1017 4.84E-47 T 23-04-2016 NIDE_RS08285 5bed70138d05470e17a431811f1543e6 1034 SUPERFAMILY SSF82693 44 126 6.28E-20 T 23-04-2016 NIDE_RS13675 501eeeed70ab5f395d9df37d7f935caf 357 PANTHER PTHR12526:SF399 3 351 5.3E-54 T 23-04-2016 NIDE_RS13675 501eeeed70ab5f395d9df37d7f935caf 357 SUPERFAMILY SSF53756 8 350 1.22E-67 T 23-04-2016 NIDE_RS13675 501eeeed70ab5f395d9df37d7f935caf 357 Pfam PF13439 Glycosyltransferase Family 4 87 164 3.9E-11 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS13675 501eeeed70ab5f395d9df37d7f935caf 357 PANTHER PTHR12526 3 351 5.3E-54 T 23-04-2016 NIDE_RS13675 501eeeed70ab5f395d9df37d7f935caf 357 Pfam PF00534 Glycosyl transferases group 1 173 331 2.1E-30 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS13675 501eeeed70ab5f395d9df37d7f935caf 357 Gene3D G3DSA:3.40.50.2000 174 329 2.4E-26 T 23-04-2016 NIDE_RS01825 1f1856b89cc49b9f2acb51fc26c3c4d8 234 Pfam PF00834 Ribulose-phosphate 3 epimerase family 8 204 5.7E-85 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 NIDE_RS01825 1f1856b89cc49b9f2acb51fc26c3c4d8 234 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 137 159 - T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 NIDE_RS01825 1f1856b89cc49b9f2acb51fc26c3c4d8 234 SUPERFAMILY SSF51366 6 217 1.41E-75 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 NIDE_RS01825 1f1856b89cc49b9f2acb51fc26c3c4d8 234 PANTHER PTHR11749 4 218 3.8E-119 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 NIDE_RS01825 1f1856b89cc49b9f2acb51fc26c3c4d8 234 PIRSF PIRSF001461 2 229 7.8E-98 T 23-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 NIDE_RS01825 1f1856b89cc49b9f2acb51fc26c3c4d8 234 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 35 49 - T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 NIDE_RS01825 1f1856b89cc49b9f2acb51fc26c3c4d8 234 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 8 217 1.1E-93 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 NIDE_RS01825 1f1856b89cc49b9f2acb51fc26c3c4d8 234 Gene3D G3DSA:3.20.20.70 6 222 3.7E-95 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS05330 3de737b46d161520d972dba7667877d9 234 Pfam PF02682 Allophanate hydrolase subunit 1 10 210 5.6E-69 T 23-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D NIDE_RS05330 3de737b46d161520d972dba7667877d9 234 PANTHER PTHR34698 5 229 2.7E-85 T 23-04-2016 NIDE_RS05330 3de737b46d161520d972dba7667877d9 234 PANTHER PTHR34698:SF2 5 229 2.7E-85 T 23-04-2016 NIDE_RS05330 3de737b46d161520d972dba7667877d9 234 Gene3D G3DSA:3.30.1360.40 10 82 2.2E-19 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain NIDE_RS05330 3de737b46d161520d972dba7667877d9 234 Gene3D G3DSA:2.40.100.10 96 230 4.1E-49 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS05330 3de737b46d161520d972dba7667877d9 234 SUPERFAMILY SSF50891 97 226 1.63E-43 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS05330 3de737b46d161520d972dba7667877d9 234 SUPERFAMILY SSF160467 10 101 1.14E-19 T 23-04-2016 NIDE_RS05330 3de737b46d161520d972dba7667877d9 234 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 14 219 5.4E-60 T 23-04-2016 IPR010016 KipI family NIDE_RS05330 3de737b46d161520d972dba7667877d9 234 SMART SM00796 9 210 1.7E-85 T 23-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Gene3D G3DSA:3.30.565.10 744 894 1.1E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 PRINTS PR00344 Bacterial sensor protein C-terminal signature 855 873 7.5E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 PRINTS PR00344 Bacterial sensor protein C-terminal signature 879 892 7.5E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 PRINTS PR00344 Bacterial sensor protein C-terminal signature 822 836 7.5E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 PRINTS PR00344 Bacterial sensor protein C-terminal signature 840 850 7.5E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SMART SM00091 254 322 5.1 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SMART SM00091 514 584 1.6E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SMART SM00091 383 453 1.2 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SMART SM00091 129 195 3.1E-4 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Gene3D G3DSA:1.10.287.130 669 734 3.1E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SMART SM00086 593 636 0.0038 T 23-04-2016 IPR001610 PAC motif NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SMART SM00086 201 242 61.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SMART SM00086 329 371 9.8E-12 T 23-04-2016 IPR001610 PAC motif NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Pfam PF08447 PAS fold 281 364 6.4E-20 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SUPERFAMILY SSF55785 367 467 1.05E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SUPERFAMILY SSF47384 667 737 1.71E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Gene3D G3DSA:3.30.450.20 500 634 1.3E-19 T 23-04-2016 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Gene3D G3DSA:3.30.450.20 377 499 3.6E-14 T 23-04-2016 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Pfam PF00512 His Kinase A (phospho-acceptor) domain 676 734 4.1E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 PANTHER PTHR24423 220 386 3.5E-105 T 23-04-2016 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 PANTHER PTHR24423 512 651 3.5E-105 T 23-04-2016 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 PANTHER PTHR24423 672 898 3.5E-105 T 23-04-2016 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Pfam PF08448 PAS fold 522 638 3.2E-10 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Pfam PF08448 PAS fold 135 242 2.7E-21 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SUPERFAMILY SSF55785 525 643 6.78E-19 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SUPERFAMILY SSF55874 736 893 1.06E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Gene3D G3DSA:3.30.450.20 234 376 2.9E-39 T 23-04-2016 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SMART SM00387 785 895 6.6E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Pfam PF13426 PAS domain 403 501 0.18 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SUPERFAMILY SSF55785 262 374 2.62E-23 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SUPERFAMILY SSF55785 123 240 1.05E-19 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Gene3D G3DSA:3.30.450.20 128 233 8.6E-22 T 23-04-2016 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 788 894 4.3E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 SMART SM00388 676 742 3.6E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 251 378 4.9E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 513 643 5.6E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 380 509 3.6E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS20960 75ee1e547a06df1c1ac86dcbf2b66904 924 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 130 248 7.0E-16 T 23-04-2016 IPR000014 PAS domain NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 Gene3D G3DSA:3.30.565.10 311 482 1.2E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 SUPERFAMILY SSF47384 242 325 1.86E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 Gene3D G3DSA:1.10.287.130 249 310 2.2E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 PANTHER PTHR24423 198 486 1.2E-84 T 23-04-2016 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 SMART SM00388 257 325 4.3E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 SUPERFAMILY SSF55874 315 481 7.6E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 SUPERFAMILY SSF158472 205 253 1.96E-5 T 23-04-2016 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 438 8.6E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 424 8.6E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 482 8.6E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 463 8.6E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 SMART SM00304 204 256 2.3E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 SMART SM00387 371 485 1.8E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 Pfam PF00672 HAMP domain 188 253 3.3E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 325 1.9E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20620 5728393f7f2c77ad2add0e8e290cf06a 490 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 372 484 2.9E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS04155 5cfc525448e72c803cd1987e4e7926bb 206 SUPERFAMILY SSF46626 75 179 6.68E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS04155 5cfc525448e72c803cd1987e4e7926bb 206 Pfam PF00034 Cytochrome c 77 170 1.0E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS04155 5cfc525448e72c803cd1987e4e7926bb 206 Gene3D G3DSA:1.10.760.10 47 170 2.4E-11 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS14935 63496ba8fd35773d2c2d39d297efc2e6 435 SUPERFAMILY SSF48695 53 245 3.42E-17 T 23-04-2016 IPR011031 Multihaem cytochrome NIDE_RS14935 63496ba8fd35773d2c2d39d297efc2e6 435 Pfam PF13435 Cytochrome c554 and c-prime 58 158 8.9E-5 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 NIDE_RS14935 63496ba8fd35773d2c2d39d297efc2e6 435 Gene3D G3DSA:1.10.710.10 52 243 1.1E-16 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 Pfam PF02154 Flagellar motor switch protein FliM 38 230 2.0E-60 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 PANTHER PTHR30034:SF0 1 322 5.4E-124 T 23-04-2016 NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 SUPERFAMILY SSF103039 55 230 3.4E-17 T 23-04-2016 IPR028976 CheC-like domain NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 SUPERFAMILY SSF103039 4 13 3.4E-17 T 23-04-2016 IPR028976 CheC-like domain NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 1.7E-19 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 1.7E-19 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 1.7E-19 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 1.7E-19 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 Gene3D G3DSA:2.30.330.10 241 322 8.9E-17 T 23-04-2016 NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 320 5.4E-97 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 SUPERFAMILY SSF101801 249 322 1.44E-16 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 252 322 6.6E-20 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 PIRSF PIRSF002888 1 323 1.8E-95 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 NIDE_RS10515 0dc27b9d91da58305d2b0fe105be7069 323 PANTHER PTHR30034 1 322 5.4E-124 T 23-04-2016 NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PANTHER PTHR24322:SF211 11 138 6.7E-50 T 23-04-2016 NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PANTHER PTHR24322:SF211 154 186 6.7E-50 T 23-04-2016 NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 241 3.1E-58 T 23-04-2016 NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 Gene3D G3DSA:3.40.50.720 1 243 8.7E-80 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 SUPERFAMILY SSF51735 5 243 1.59E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.7E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 4.7E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 4.7E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.7E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 4.7E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 4.7E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PANTHER PTHR24322 11 138 6.7E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PANTHER PTHR24322 154 186 6.7E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 8.2E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 8.2E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00235 1947a3b8a166ecbf4c7c79fce7882575 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 8.2E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 Gene3D G3DSA:3.40.50.1220 186 333 6.6E-41 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 SUPERFAMILY SSF52518 359 544 2.76E-43 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 381 523 3.4E-24 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 SUPERFAMILY SSF52467 163 331 1.52E-31 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 PIRSF PIRSF036565 1 547 3.7E-145 T 23-04-2016 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 Gene3D G3DSA:3.40.50.970 353 532 2.7E-49 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 197 316 2.3E-27 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 174 8.0E-38 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 SUPERFAMILY SSF52518 3 174 1.03E-37 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 PANTHER PTHR18968:SF4 5 549 2.8E-141 T 23-04-2016 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 Gene3D G3DSA:3.40.50.970 3 180 1.1E-56 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS07670 285db630f05158b8d5c7204b4c13f43e 550 PANTHER PTHR18968 5 549 2.8E-141 T 23-04-2016 NIDE_RS21020 7e8d8fbe782806a9e0595f927d609783 181 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 99 1.3E-12 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 NIDE_RS21020 7e8d8fbe782806a9e0595f927d609783 181 Gene3D G3DSA:2.40.50.140 113 175 1.4E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS21020 7e8d8fbe782806a9e0595f927d609783 181 SMART SM00357 113 176 5.5E-9 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 NIDE_RS21020 7e8d8fbe782806a9e0595f927d609783 181 SUPERFAMILY SSF69754 1 96 3.01E-16 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 NIDE_RS21020 7e8d8fbe782806a9e0595f927d609783 181 SUPERFAMILY SSF50249 113 174 4.16E-11 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS21020 7e8d8fbe782806a9e0595f927d609783 181 Gene3D G3DSA:3.30.160.100 1 102 5.9E-17 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 NIDE_RS21020 7e8d8fbe782806a9e0595f927d609783 181 Pfam PF00313 'Cold-shock' DNA-binding domain 113 175 1.7E-10 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NIDE_RS06180 1eba777ab3e0bd90010edbb9eb8b050c 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 7.9E-28 T 23-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 NIDE_RS06180 1eba777ab3e0bd90010edbb9eb8b050c 72 SMART SM00316 4 72 1.7E-7 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS06180 1eba777ab3e0bd90010edbb9eb8b050c 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.102 T 23-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 NIDE_RS06180 1eba777ab3e0bd90010edbb9eb8b050c 72 Gene3D G3DSA:2.40.50.140 2 72 2.9E-39 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06180 1eba777ab3e0bd90010edbb9eb8b050c 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 1.2E-37 T 23-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 NIDE_RS06180 1eba777ab3e0bd90010edbb9eb8b050c 72 SUPERFAMILY SSF50249 2 71 3.81E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06180 1eba777ab3e0bd90010edbb9eb8b050c 72 PANTHER PTHR33370 3 72 5.0E-48 T 23-04-2016 NIDE_RS16330 c42b4d58326277e156c5b8be94d331cf 105 SMART SM01152 16 92 3.7E-35 T 23-04-2016 IPR003746 Protein of unknown function DUF167 NIDE_RS16330 c42b4d58326277e156c5b8be94d331cf 105 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 13 93 1.4E-18 T 23-04-2016 IPR005228 Conserved hypothetical protein CHP00251 NIDE_RS16330 c42b4d58326277e156c5b8be94d331cf 105 SUPERFAMILY SSF69786 12 95 5.62E-27 T 23-04-2016 IPR003746 Protein of unknown function DUF167 NIDE_RS16330 c42b4d58326277e156c5b8be94d331cf 105 PANTHER PTHR13420 19 102 2.3E-20 T 23-04-2016 NIDE_RS16330 c42b4d58326277e156c5b8be94d331cf 105 Hamap MF_00634 UPF0235 protein YggU [yggU]. 16 104 19.996 T 23-04-2016 IPR003746 Protein of unknown function DUF167 NIDE_RS16330 c42b4d58326277e156c5b8be94d331cf 105 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 19 90 1.7E-25 T 23-04-2016 IPR003746 Protein of unknown function DUF167 NIDE_RS16330 c42b4d58326277e156c5b8be94d331cf 105 Gene3D G3DSA:3.30.1200.10 12 102 4.5E-30 T 23-04-2016 IPR003746 Protein of unknown function DUF167 NIDE_RS04905 ffe52789d3470c7d8c6471bd89ac1224 638 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 145 605 1.5E-218 T 23-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 NIDE_RS04905 ffe52789d3470c7d8c6471bd89ac1224 638 PANTHER PTHR30557:SF1 138 168 0.0 T 23-04-2016 NIDE_RS04905 ffe52789d3470c7d8c6471bd89ac1224 638 PANTHER PTHR30557:SF1 204 637 0.0 T 23-04-2016 NIDE_RS04905 ffe52789d3470c7d8c6471bd89ac1224 638 PANTHER PTHR30557:SF1 27 104 0.0 T 23-04-2016 NIDE_RS04905 ffe52789d3470c7d8c6471bd89ac1224 638 Pfam PF13667 ThiC-associated domain 27 106 4.6E-32 T 23-04-2016 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 NIDE_RS04905 ffe52789d3470c7d8c6471bd89ac1224 638 PANTHER PTHR30557 138 168 0.0 T 23-04-2016 NIDE_RS04905 ffe52789d3470c7d8c6471bd89ac1224 638 PANTHER PTHR30557 204 637 0.0 T 23-04-2016 NIDE_RS04905 ffe52789d3470c7d8c6471bd89ac1224 638 PANTHER PTHR30557 27 104 0.0 T 23-04-2016 NIDE_RS04905 ffe52789d3470c7d8c6471bd89ac1224 638 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 145 607 55.944 T 23-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 NIDE_RS04905 ffe52789d3470c7d8c6471bd89ac1224 638 Pfam PF01964 Radical SAM ThiC family 147 601 2.2E-201 T 23-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 NIDE_RS09180 7e20700541de6d36c3a893825350f48c 295 SMART SM00869 1 284 1.3E-25 T 23-04-2016 IPR005546 Autotransporter beta-domain NIDE_RS09180 7e20700541de6d36c3a893825350f48c 295 Gene3D G3DSA:2.40.128.130 2 293 1.3E-50 T 23-04-2016 IPR005546 Autotransporter beta-domain NIDE_RS09180 7e20700541de6d36c3a893825350f48c 295 Pfam PF03797 Autotransporter beta-domain 4 274 1.6E-30 T 23-04-2016 IPR005546 Autotransporter beta-domain NIDE_RS09180 7e20700541de6d36c3a893825350f48c 295 SUPERFAMILY SSF103515 2 293 2.35E-36 T 23-04-2016 IPR005546 Autotransporter beta-domain NIDE_RS07450 7879573c31df0d1afe3eb810c79bb1d9 365 Pfam PF00005 ABC transporter 20 160 1.6E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS07450 7879573c31df0d1afe3eb810c79bb1d9 365 SUPERFAMILY SSF52540 3 241 1.5E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07450 7879573c31df0d1afe3eb810c79bb1d9 365 SUPERFAMILY SSF50331 235 338 4.36E-11 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal NIDE_RS07450 7879573c31df0d1afe3eb810c79bb1d9 365 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS07450 7879573c31df0d1afe3eb810c79bb1d9 365 PANTHER PTHR24220:SF123 4 256 1.7E-122 T 23-04-2016 NIDE_RS07450 7879573c31df0d1afe3eb810c79bb1d9 365 SMART SM00382 27 210 3.2E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS07450 7879573c31df0d1afe3eb810c79bb1d9 365 Gene3D G3DSA:3.40.50.300 3 233 7.6E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07450 7879573c31df0d1afe3eb810c79bb1d9 365 PANTHER PTHR24220 4 256 1.7E-122 T 23-04-2016 NIDE_RS07450 7879573c31df0d1afe3eb810c79bb1d9 365 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 238 2.8E-106 T 23-04-2016 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 NIDE_RS06420 e21da9a6379f587e97e4a32d98017aef 157 PANTHER PTHR11078 4 148 6.0E-47 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 NIDE_RS06420 e21da9a6379f587e97e4a32d98017aef 157 Gene3D G3DSA:1.10.940.10 1 129 2.3E-44 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 NIDE_RS06420 e21da9a6379f587e97e4a32d98017aef 157 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 3 128 2.6E-41 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 NIDE_RS06420 e21da9a6379f587e97e4a32d98017aef 157 Pfam PF01029 NusB family 5 128 8.2E-38 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 NIDE_RS06420 e21da9a6379f587e97e4a32d98017aef 157 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 2 133 23.105 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 NIDE_RS06420 e21da9a6379f587e97e4a32d98017aef 157 SUPERFAMILY SSF48013 3 128 3.79E-39 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 NIDE_RS01965 f1e412ea3efb9e2d14a01dd01a60955c 231 SUPERFAMILY SSF69593 18 200 1.09E-37 T 23-04-2016 NIDE_RS01965 f1e412ea3efb9e2d14a01dd01a60955c 231 PANTHER PTHR10434:SF21 1 202 1.2E-47 T 23-04-2016 NIDE_RS01965 f1e412ea3efb9e2d14a01dd01a60955c 231 SMART SM00563 35 147 3.4E-24 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 NIDE_RS01965 f1e412ea3efb9e2d14a01dd01a60955c 231 Pfam PF01553 Acyltransferase 26 144 8.6E-22 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 NIDE_RS01965 f1e412ea3efb9e2d14a01dd01a60955c 231 Gene3D G3DSA:3.40.1130.10 29 201 2.1E-28 T 23-04-2016 NIDE_RS01965 f1e412ea3efb9e2d14a01dd01a60955c 231 PANTHER PTHR10434 1 202 1.2E-47 T 23-04-2016 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 Gene3D G3DSA:3.30.565.10 344 510 3.4E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 SUPERFAMILY SSF55874 357 512 9.43E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 PANTHER PTHR24423 223 525 1.0E-56 T 23-04-2016 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 PANTHER PTHR24423 1 10 1.0E-56 T 23-04-2016 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 PRINTS PR00344 Bacterial sensor protein C-terminal signature 496 509 3.0E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 453 3.0E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 PRINTS PR00344 Bacterial sensor protein C-terminal signature 472 490 3.0E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 SMART SM00388 290 358 1.0E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 Pfam PF00672 HAMP domain 210 279 3.3E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 SMART SM00387 400 512 8.3E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 Pfam PF00512 His Kinase A (phospho-acceptor) domain 291 357 2.7E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 SUPERFAMILY SSF158472 229 279 1.57E-9 T 23-04-2016 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 Gene3D G3DSA:1.10.287.130 286 343 8.0E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 402 510 1.4E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 SMART SM00304 229 282 2.1E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS20840 fd6459621631c06fb2e5de264f69e41f 528 SUPERFAMILY SSF47384 273 358 3.14E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05540 d9a5d7e1aa69b03846d1662d6f1e0fb7 222 Gene3D G3DSA:1.20.910.10 1 221 7.4E-70 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 NIDE_RS05540 d9a5d7e1aa69b03846d1662d6f1e0fb7 222 Pfam PF03070 TENA/THI-4/PQQC family 11 216 9.8E-41 T 23-04-2016 IPR004305 Thiaminase-2/PQQC NIDE_RS05540 d9a5d7e1aa69b03846d1662d6f1e0fb7 222 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 11 215 7.1E-46 T 23-04-2016 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356|UniPathway: UPA00060 NIDE_RS05540 d9a5d7e1aa69b03846d1662d6f1e0fb7 222 SUPERFAMILY SSF48613 1 215 1.91E-65 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 NIDE_RS05540 d9a5d7e1aa69b03846d1662d6f1e0fb7 222 PANTHER PTHR20858 11 181 3.0E-46 T 23-04-2016 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 Pfam PF01025 GrpE 27 179 5.4E-50 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 SUPERFAMILY SSF58014 28 124 1.57E-26 T 23-04-2016 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 ProSitePatterns PS01071 grpE protein signature. 135 178 - T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 Gene3D G3DSA:2.30.22.10 124 181 8.1E-22 T 23-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 PRINTS PR00773 GrpE protein signature 78 93 3.8E-25 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 PRINTS PR00773 GrpE protein signature 50 66 3.8E-25 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 PRINTS PR00773 GrpE protein signature 159 178 3.8E-25 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 PRINTS PR00773 GrpE protein signature 132 147 3.8E-25 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 Gene3D G3DSA:3.90.20.20 26 123 1.4E-29 T 23-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 Hamap MF_01151 Protein GrpE [grpE]. 3 180 19.316 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 SUPERFAMILY SSF51064 125 180 2.22E-16 T 23-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 NIDE_RS07935 c59de41eeed9e6c0bf14a5cf5e1b11db 184 PANTHER PTHR21237 28 183 1.4E-52 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 NIDE_RS04440 a4db04c9f302463529862e7f10b8210f 92 SUPERFAMILY SSF54862 4 67 2.45E-9 T 23-04-2016 NIDE_RS04440 a4db04c9f302463529862e7f10b8210f 92 Gene3D G3DSA:3.30.70.20 4 72 1.1E-9 T 23-04-2016 NIDE_RS09715 5f746352fa8b50732ddbf50bd803f44c 205 PANTHER PTHR30055 7 203 2.0E-46 T 23-04-2016 NIDE_RS09715 5f746352fa8b50732ddbf50bd803f44c 205 PANTHER PTHR30055:SF44 7 203 2.0E-46 T 23-04-2016 NIDE_RS09715 5f746352fa8b50732ddbf50bd803f44c 205 SUPERFAMILY SSF48498 90 202 8.01E-23 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal NIDE_RS09715 5f746352fa8b50732ddbf50bd803f44c 205 Pfam PF16925 Bacterial transcriptional repressor C-terminal 111 179 9.6E-7 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal NIDE_RS09715 5f746352fa8b50732ddbf50bd803f44c 205 Gene3D G3DSA:1.10.357.10 83 203 1.4E-20 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 NIDE_RS09715 5f746352fa8b50732ddbf50bd803f44c 205 Gene3D G3DSA:1.10.10.60 13 78 4.5E-21 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS09715 5f746352fa8b50732ddbf50bd803f44c 205 SUPERFAMILY SSF46689 9 93 6.67E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS09715 5f746352fa8b50732ddbf50bd803f44c 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 69 1.5E-13 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 Pfam PF00171 Aldehyde dehydrogenase family 2 298 7.1E-20 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 SUPERFAMILY SSF53720 2 408 2.88E-117 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 PIRSF PIRSF000151 1 409 1.7E-173 T 23-04-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 315 336 - T 23-04-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 1 408 39.993 T 23-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 Gene3D G3DSA:3.40.605.10 2 216 1.9E-101 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 Gene3D G3DSA:3.40.605.10 366 408 1.9E-101 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 PANTHER PTHR11063:SF8 3 409 3.2E-181 T 23-04-2016 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 5 397 7.5E-146 T 23-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 PANTHER PTHR11063 3 409 3.2E-181 T 23-04-2016 NIDE_RS12935 a5464258c9a64dec6556f8cd8a070358 409 Gene3D G3DSA:3.40.309.10 219 364 5.6E-43 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 NIDE_RS16085 dba924af8fdc886b5ace6a90bce43955 227 SUPERFAMILY SSF56784 7 215 4.88E-13 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS16085 dba924af8fdc886b5ace6a90bce43955 227 Gene3D G3DSA:3.40.50.1000 71 222 2.4E-75 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS12425 676ac2dc140038923a43a8d4fb8d76bf 725 SUPERFAMILY SSF52540 534 718 4.52E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12425 676ac2dc140038923a43a8d4fb8d76bf 725 Pfam PF13807 G-rich domain on putative tyrosine kinase 387 463 9.1E-12 T 23-04-2016 IPR032807 Tyrosine kinase, G-rich domain NIDE_RS12425 676ac2dc140038923a43a8d4fb8d76bf 725 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 514 721 7.8E-44 T 23-04-2016 IPR005702 Exopolysaccharide synthesis protein GO:0045226 NIDE_RS12425 676ac2dc140038923a43a8d4fb8d76bf 725 PANTHER PTHR32309 1 724 3.7E-123 T 23-04-2016 NIDE_RS12425 676ac2dc140038923a43a8d4fb8d76bf 725 Gene3D G3DSA:3.40.50.300 534 711 2.1E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12425 676ac2dc140038923a43a8d4fb8d76bf 725 Pfam PF02706 Chain length determinant protein 9 185 5.9E-13 T 23-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 NIDE_RS12425 676ac2dc140038923a43a8d4fb8d76bf 725 PANTHER PTHR32309:SF13 1 724 3.7E-123 T 23-04-2016 NIDE_RS12425 676ac2dc140038923a43a8d4fb8d76bf 725 Pfam PF13614 AAA domain 545 695 5.8E-7 T 23-04-2016 IPR025669 AAA domain NIDE_RS17590 ab37e7d3c3f285a96bcefd5dfab9b54b 217 Pfam PF00156 Phosphoribosyl transferase domain 8 194 6.9E-21 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 NIDE_RS17590 ab37e7d3c3f285a96bcefd5dfab9b54b 217 PANTHER PTHR31299 1 214 6.0E-78 T 23-04-2016 NIDE_RS17590 ab37e7d3c3f285a96bcefd5dfab9b54b 217 Gene3D G3DSA:3.40.50.2020 2 65 5.0E-31 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS17590 ab37e7d3c3f285a96bcefd5dfab9b54b 217 Gene3D G3DSA:3.40.50.2020 97 202 5.0E-31 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS17590 ab37e7d3c3f285a96bcefd5dfab9b54b 217 SUPERFAMILY SSF53271 1 207 8.73E-40 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Pfam PF08448 PAS fold 842 950 7.7E-15 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Pfam PF08447 PAS fold 984 1069 1.6E-14 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Pfam PF08447 PAS fold 484 567 1.7E-22 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Pfam PF08447 PAS fold 728 817 2.6E-24 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SUPERFAMILY SSF55785 820 946 1.01E-27 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SUPERFAMILY SSF55785 466 576 6.98E-24 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Gene3D G3DSA:3.30.565.10 1198 1307 1.1E-10 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Pfam PF00989 PAS fold 175 223 3.1E-8 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SUPERFAMILY SSF55785 184 299 6.28E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Pfam PF01590 GAF domain 30 158 5.9E-12 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 588 700 8.8E-19 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 834 953 1.9E-23 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 956 1079 4.1E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 454 581 8.2E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 175 299 2.5E-9 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 701 829 8.6E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Gene3D G3DSA:3.30.450.20 173 290 2.5E-14 T 23-04-2016 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1216 1306 6.0E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Gene3D G3DSA:3.30.450.20 578 688 3.0E-23 T 23-04-2016 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Gene3D G3DSA:3.30.450.20 829 941 5.6E-30 T 23-04-2016 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SUPERFAMILY SSF55785 593 701 6.14E-24 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 PANTHER PTHR24423 443 569 1.2E-55 T 23-04-2016 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 PANTHER PTHR24423 1102 1319 1.2E-55 T 23-04-2016 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 PANTHER PTHR24423 689 840 1.2E-55 T 23-04-2016 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Pfam PF13426 PAS domain 598 692 1.0E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00387 1214 1308 3.4E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SUPERFAMILY SSF55785 945 1074 1.77E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00065 309 454 0.01 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00065 26 168 1.3E-8 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Gene3D G3DSA:3.30.450.20 454 577 1.1E-37 T 23-04-2016 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Gene3D G3DSA:3.30.450.20 942 1087 3.0E-34 T 23-04-2016 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Gene3D G3DSA:3.30.450.20 689 828 3.2E-45 T 23-04-2016 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00091 582 648 0.0028 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00091 458 526 0.0018 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00091 835 901 2.9E-9 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00091 705 773 3.7E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00091 960 1027 4.2E-4 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00091 173 239 5.9E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Pfam PF07730 Histidine kinase 1104 1174 1.4E-11 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SUPERFAMILY SSF55781 30 163 4.91E-27 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Gene3D G3DSA:3.30.450.40 313 453 4.0E-12 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 Gene3D G3DSA:3.30.450.40 24 163 2.8E-17 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SUPERFAMILY SSF55874 1213 1306 4.71E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SUPERFAMILY SSF55781 313 457 1.59E-11 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00086 653 693 1.5 T 23-04-2016 IPR001610 PAC motif NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00086 906 948 3.2E-5 T 23-04-2016 IPR001610 PAC motif NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00086 1034 1076 0.0042 T 23-04-2016 IPR001610 PAC motif NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00086 532 574 6.9E-7 T 23-04-2016 IPR001610 PAC motif NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SMART SM00086 780 823 4.2E-9 T 23-04-2016 IPR001610 PAC motif NIDE_RS02665 21d1f7a0ba998e4c24ac929f5578ba02 1332 SUPERFAMILY SSF55785 690 821 8.86E-30 T 23-04-2016 IPR000014 PAS domain NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 Pfam PF16360 GTP-binding GTPase Middle Region 162 240 2.6E-23 T 23-04-2016 IPR032305 GTP-binding protein, middle domain NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 Hamap MF_00900 GTPase HflX [hflX]. 28 434 43.839 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 Pfam PF13167 GTP-binding GTPase N-terminal 121 159 1.4E-11 T 23-04-2016 IPR025121 GTPase HflX, N-terminal NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 Pfam PF13167 GTP-binding GTPase N-terminal 26 69 9.6E-8 T 23-04-2016 IPR025121 GTPase HflX, N-terminal NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 SUPERFAMILY SSF52540 244 415 2.62E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 121 402 2.8E-106 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 PANTHER PTHR10229:SF0 120 448 5.6E-118 T 23-04-2016 NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 PIRSF PIRSF006809 1 463 3.2E-148 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 PANTHER PTHR10229 120 448 5.6E-118 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 246 266 3.4E-5 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 313 331 3.4E-5 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 Gene3D G3DSA:3.40.50.300 243 406 5.8E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11980 3bb3862538e87a82bef4fbbb1357272e 463 Pfam PF01926 50S ribosome-binding GTPase 246 364 2.5E-18 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS04695 20bc3a7824d3d8d80cccbfecaefcc52a 378 SUPERFAMILY SSF47781 5 58 6.35E-6 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 NIDE_RS04695 20bc3a7824d3d8d80cccbfecaefcc52a 378 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 75 291 1.4E-75 T 23-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 NIDE_RS04695 20bc3a7824d3d8d80cccbfecaefcc52a 378 SUPERFAMILY SSF102405 85 291 4.27E-44 T 23-04-2016 NIDE_RS04695 20bc3a7824d3d8d80cccbfecaefcc52a 378 PANTHER PTHR32039:SF8 64 372 1.3E-103 T 23-04-2016 NIDE_RS04695 20bc3a7824d3d8d80cccbfecaefcc52a 378 Gene3D G3DSA:1.10.150.20 10 58 1.1E-4 T 23-04-2016 NIDE_RS04695 20bc3a7824d3d8d80cccbfecaefcc52a 378 Pfam PF02481 DNA recombination-mediator protein A 76 282 5.7E-79 T 23-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 NIDE_RS04695 20bc3a7824d3d8d80cccbfecaefcc52a 378 Gene3D G3DSA:3.40.50.450 117 260 1.2E-12 T 23-04-2016 NIDE_RS04695 20bc3a7824d3d8d80cccbfecaefcc52a 378 PANTHER PTHR32039 64 372 1.3E-103 T 23-04-2016 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 6 302 1.3E-98 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 Gene3D G3DSA:3.40.50.1370 143 290 2.3E-47 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 Gene3D G3DSA:3.40.50.1370 3 142 1.9E-52 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PANTHER PTHR11405:SF16 2 304 8.6E-133 T 23-04-2016 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 136 147 1.1E-20 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 1.1E-20 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 291 1.1E-20 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 256 265 1.1E-20 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PANTHER PTHR11405 2 304 8.6E-133 T 23-04-2016 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 SUPERFAMILY SSF53671 3 304 2.75E-98 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 302 1.5E-25 T 23-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 260 265 1.4E-31 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 284 298 1.4E-31 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 135 152 1.4E-31 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 219 228 1.4E-31 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 80 89 1.4E-31 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 42 64 1.4E-31 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 6 148 2.9E-42 T 23-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 NIDE_RS11645 b77446009e378d52935ead1373ccb34c 306 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 5 305 41.839 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS18965 9adb3780bee6a38d71b41240299302a2 128 SUPERFAMILY SSF55486 13 126 2.11E-32 T 23-04-2016 NIDE_RS18965 9adb3780bee6a38d71b41240299302a2 128 Pfam PF06262 Zinicin-like metallopeptidase 35 126 7.8E-32 T 23-04-2016 IPR010428 Zinicin-like metallopeptidase NIDE_RS18965 9adb3780bee6a38d71b41240299302a2 128 PANTHER PTHR41522 13 126 2.0E-32 T 23-04-2016 NIDE_RS11460 4ef632df477a6a9a997cb99c1d1145c6 112 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 4 106 3.5E-11 T 23-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 NIDE_RS11460 4ef632df477a6a9a997cb99c1d1145c6 112 SUPERFAMILY SSF50118 1 109 9.37E-15 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor NIDE_RS11460 4ef632df477a6a9a997cb99c1d1145c6 112 Gene3D G3DSA:2.30.30.110 2 108 2.2E-7 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 SUPERFAMILY SSF53474 357 592 3.69E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 PANTHER PTHR10108 651 890 5.8E-19 T 23-04-2016 NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 Gene3D G3DSA:3.40.50.150 674 893 3.1E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 Pfam PF13847 Methyltransferase domain 686 847 1.7E-14 T 23-04-2016 IPR025714 Methyltransferase domain NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 SUPERFAMILY SSF141371 40 101 8.83E-7 T 23-04-2016 NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 SUPERFAMILY SSF53335 673 896 2.35E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 Pfam PF02273 Acyl transferase 362 603 3.2E-23 T 23-04-2016 IPR003157 Acyl transferase, LuxD GO:0006631|GO:0016746 UniPathway: UPA00569 NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 Pfam PF07238 PilZ domain 44 148 5.6E-7 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 Pfam PF07238 PilZ domain 204 330 4.2E-5 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 PANTHER PTHR10108:SF779 651 890 5.8E-19 T 23-04-2016 NIDE_RS04410 8d333640d7e80448a34c2170477ea4ec 910 Gene3D G3DSA:3.40.50.1820 358 641 9.5E-50 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 Gene3D G3DSA:3.40.1110.10 325 538 1.2E-53 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PANTHER PTHR24093 11 923 0.0 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 Pfam PF00689 Cation transporting ATPase, C-terminus 731 915 1.5E-40 T 23-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 SMART SM00831 8 81 1.3E-13 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 Gene3D G3DSA:1.20.1110.10 616 917 1.2E-91 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 Gene3D G3DSA:1.20.1110.10 61 120 1.2E-91 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 223 355 1.6E-23 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 95 192 4.6E-18 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 621 730 1.3E-31 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PANTHER PTHR24093:SF268 11 923 0.0 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 Pfam PF00690 Cation transporter/ATPase, N-terminus 13 75 7.1E-14 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 Gene3D G3DSA:2.70.150.10 121 233 7.9E-39 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 Gene3D G3DSA:2.70.150.10 25 60 7.9E-39 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 SUPERFAMILY SSF81653 125 233 7.85E-29 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 SUPERFAMILY SSF56784 332 352 8.44E-55 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 SUPERFAMILY SSF56784 486 752 8.44E-55 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 Pfam PF00702 haloacid dehalogenase-like hydrolase 331 661 7.2E-17 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 SUPERFAMILY SSF81665 235 328 4.45E-105 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 SUPERFAMILY SSF81665 697 919 4.45E-105 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 SUPERFAMILY SSF81665 11 126 4.45E-105 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00121 Sodium/potassium-transporting ATPase signature 68 82 3.6E-24 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00121 Sodium/potassium-transporting ATPase signature 327 348 3.6E-24 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00121 Sodium/potassium-transporting ATPase signature 254 276 3.6E-24 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00121 Sodium/potassium-transporting ATPase signature 456 474 3.6E-24 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00121 Sodium/potassium-transporting ATPase signature 788 808 3.6E-24 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00121 Sodium/potassium-transporting ATPase signature 719 740 3.6E-24 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 Pfam PF00122 E1-E2 ATPase 94 325 2.8E-61 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 336 342 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 334 348 6.6E-39 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 531 542 6.6E-39 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 647 666 6.6E-39 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 553 563 6.6E-39 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 173 187 6.6E-39 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 671 683 6.6E-39 T 23-04-2016 NIDE_RS17285 0ffa85d5bad2e054dac4db4537d032b0 932 SUPERFAMILY SSF81660 340 543 2.29E-45 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 246 1.3E-46 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 SUPERFAMILY SSF52518 285 460 1.14E-55 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 Pfam PF02780 Transketolase, C-terminal domain 472 590 2.8E-25 T 23-04-2016 IPR033248 Transketolase, C-terminal domain NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 Gene3D G3DSA:3.40.50.920 469 598 5.6E-28 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 Gene3D G3DSA:3.40.50.970 288 468 5.7E-61 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 PANTHER PTHR11624 1 599 1.5E-297 T 23-04-2016 IPR033247 Transketolase family NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 ProSitePatterns PS00802 Transketolase signature 2. 401 417 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 Gene3D G3DSA:3.40.50.970 3 254 3.0E-87 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 Pfam PF02779 Transketolase, pyrimidine binding domain 295 455 1.1E-40 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 SUPERFAMILY SSF52922 466 599 3.01E-25 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 PANTHER PTHR11624:SF2 1 599 1.5E-297 T 23-04-2016 NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 SMART SM00861 295 458 2.7E-53 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain NIDE_RS11630 614ddf59afab11bc43dc7c819248cd5f 603 SUPERFAMILY SSF52518 3 256 1.95E-83 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS12210 81f301cf39e2f5740b5c65edf7d41a75 318 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 318 97.556 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 NIDE_RS12210 81f301cf39e2f5740b5c65edf7d41a75 318 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 6 287 1.3E-67 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 NIDE_RS12210 81f301cf39e2f5740b5c65edf7d41a75 318 PANTHER PTHR34308 6 317 3.3E-95 T 23-04-2016 NIDE_RS12210 81f301cf39e2f5740b5c65edf7d41a75 318 PANTHER PTHR34308:SF1 6 317 3.3E-95 T 23-04-2016 NIDE_RS12210 81f301cf39e2f5740b5c65edf7d41a75 318 Pfam PF03186 CobD/Cbib protein 6 300 4.5E-100 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 PANTHER PTHR24220 270 343 1.7E-143 T 23-04-2016 NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 Gene3D G3DSA:3.40.50.300 4 234 1.3E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 Gene3D G3DSA:2.40.50.140 286 345 4.9E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 SUPERFAMILY SSF52540 4 242 1.68E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 Pfam PF08402 TOBE domain 281 352 6.1E-11 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 SUPERFAMILY SSF50331 236 352 8.99E-26 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 PANTHER PTHR24220 5 240 1.7E-143 T 23-04-2016 NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 PANTHER PTHR24220:SF151 270 343 1.7E-143 T 23-04-2016 NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 PANTHER PTHR24220:SF151 5 240 1.7E-143 T 23-04-2016 NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 Pfam PF00005 ABC transporter 19 161 7.7E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 Gene3D G3DSA:2.40.50.100 346 352 4.1E-6 T 23-04-2016 NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 Gene3D G3DSA:2.40.50.100 239 285 4.1E-6 T 23-04-2016 NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 SMART SM00382 28 211 7.7E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS15555 2cc5bc4517ab49f1c1b0f889846beb27 366 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS03330 956f3656832111ebee3b41d4585d34ab 397 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 48 387 1.5E-70 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS03330 956f3656832111ebee3b41d4585d34ab 397 PANTHER PTHR30469 1 397 1.8E-74 T 23-04-2016 NIDE_RS03330 956f3656832111ebee3b41d4585d34ab 397 Gene3D G3DSA:2.40.50.100 193 222 4.0E-16 T 23-04-2016 NIDE_RS03330 956f3656832111ebee3b41d4585d34ab 397 Gene3D G3DSA:2.40.50.100 72 104 4.0E-16 T 23-04-2016 NIDE_RS03330 956f3656832111ebee3b41d4585d34ab 397 SUPERFAMILY SSF111369 61 313 7.72E-31 T 23-04-2016 NIDE_RS03330 956f3656832111ebee3b41d4585d34ab 397 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 69 307 1.5E-31 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS00735 14108b6ba1cf0bee00ee15ce786eae5f 621 Gene3D G3DSA:3.80.30.20 269 434 2.4E-16 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS00735 14108b6ba1cf0bee00ee15ce786eae5f 621 SUPERFAMILY SSF102114 245 434 2.9E-18 T 23-04-2016 NIDE_RS00735 14108b6ba1cf0bee00ee15ce786eae5f 621 TIGRFAM TIGR03975 rSAM_ocin_1: ribosomal peptide maturation radical SAM protein 1 8 615 1.1E-179 T 23-04-2016 IPR023984 Ribosomal peptide maturation radical SAM protein 1 NIDE_RS00735 14108b6ba1cf0bee00ee15ce786eae5f 621 PANTHER PTHR11918:SF64 131 434 2.8E-30 T 23-04-2016 NIDE_RS00735 14108b6ba1cf0bee00ee15ce786eae5f 621 SMART SM00729 264 476 1.9E-6 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS00735 14108b6ba1cf0bee00ee15ce786eae5f 621 PANTHER PTHR11918 131 434 2.8E-30 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS00735 14108b6ba1cf0bee00ee15ce786eae5f 621 Pfam PF02310 B12 binding domain 131 200 1.7E-8 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS12010 b7781e743867faf5efcf2eef3271eaac 164 Pfam PF00782 Dual specificity phosphatase, catalytic domain 87 159 4.2E-7 T 23-04-2016 IPR000340 Dual specificity phosphatase, catalytic domain GO:0006470|GO:0008138 NIDE_RS12010 b7781e743867faf5efcf2eef3271eaac 164 SUPERFAMILY SSF52799 27 158 1.44E-24 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like NIDE_RS12010 b7781e743867faf5efcf2eef3271eaac 164 PANTHER PTHR23339:SF64 31 159 1.8E-15 T 23-04-2016 NIDE_RS12010 b7781e743867faf5efcf2eef3271eaac 164 PANTHER PTHR23339 31 159 1.8E-15 T 23-04-2016 NIDE_RS12010 b7781e743867faf5efcf2eef3271eaac 164 Gene3D G3DSA:3.90.190.10 24 159 3.6E-24 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like NIDE_RS12010 b7781e743867faf5efcf2eef3271eaac 164 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 105 115 - T 23-04-2016 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311|GO:0016791 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 PANTHER PTHR26402:SF151 4 211 1.7E-61 T 23-04-2016 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 PANTHER PTHR26402 4 211 1.7E-61 T 23-04-2016 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 SMART SM00448 4 115 1.1E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 SUPERFAMILY SSF46894 141 211 9.86E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 Gene3D G3DSA:1.10.10.10 155 211 3.4E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 1.2E-16 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 3.9E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 3.9E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 3.9E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 Gene3D G3DSA:3.40.50.2300 1 154 2.6E-38 T 23-04-2016 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 Pfam PF00072 Response regulator receiver domain 6 116 1.8E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 SUPERFAMILY SSF52172 3 131 2.42E-33 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS18155 6eb742056128cf0d6a4435de21c33899 214 SMART SM00421 148 205 7.8E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 Pfam PF00158 Sigma-54 interaction domain 146 310 1.7E-66 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 SUPERFAMILY SSF46689 358 458 4.35E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 SUPERFAMILY SSF52172 4 188 7.26E-39 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 SUPERFAMILY SSF52540 145 387 9.53E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 Pfam PF00072 Response regulator receiver domain 5 107 3.5E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 Pfam PF02954 Bacterial regulatory protein, Fis family 418 458 2.3E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 SMART SM00382 164 307 3.7E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 PANTHER PTHR32071 1 458 3.6E-172 T 23-04-2016 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 Gene3D G3DSA:1.10.8.60 318 391 1.4E-21 T 23-04-2016 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 Gene3D G3DSA:1.10.10.60 417 458 2.0E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 Gene3D G3DSA:3.40.50.2300 2 119 7.6E-31 T 23-04-2016 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 SMART SM00448 3 114 1.9E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14830 d190dc0063b3154d3ea25ad69ec050e7 463 Gene3D G3DSA:3.40.50.300 143 316 7.7E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02435 6dcc230ca7e9a484cf6bfa31f9ad23d6 414 Pfam PF04455 LOR/SDH bifunctional enzyme conserved region 6 103 4.9E-29 T 23-04-2016 IPR007545 LOR/SDH bifunctional enzyme, conserved domain NIDE_RS02435 6dcc230ca7e9a484cf6bfa31f9ad23d6 414 TIGRFAM TIGR00300 TIGR00300: TIGR00300 family protein 7 410 2.5E-137 T 23-04-2016 IPR005239 Conserved hypothetical protein CHP00300 NIDE_RS02435 6dcc230ca7e9a484cf6bfa31f9ad23d6 414 Gene3D G3DSA:3.40.50.10690 177 410 3.0E-93 T 23-04-2016 NIDE_RS02435 6dcc230ca7e9a484cf6bfa31f9ad23d6 414 Gene3D G3DSA:2.40.420.10 73 160 5.4E-28 T 23-04-2016 NIDE_RS08455 f75ba64867daa80b49cdb2a5d5c6ed07 143 Pfam PF16798 Domain of unknown function (DUF5069) 6 137 1.1E-50 T 23-04-2016 IPR031849 Domain of unknown function DUF5069 NIDE_RS04525 b1f5d8cd214b2cc6a53560602b8d7af1 241 Gene3D G3DSA:3.20.20.70 1 236 2.6E-80 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS04525 b1f5d8cd214b2cc6a53560602b8d7af1 241 PANTHER PTHR21235:SF15 1 238 3.4E-93 T 23-04-2016 NIDE_RS04525 b1f5d8cd214b2cc6a53560602b8d7af1 241 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 232 5.8E-78 T 23-04-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 NIDE_RS04525 b1f5d8cd214b2cc6a53560602b8d7af1 241 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 237 34.444 T 23-04-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 NIDE_RS04525 b1f5d8cd214b2cc6a53560602b8d7af1 241 PANTHER PTHR21235 1 238 3.4E-93 T 23-04-2016 NIDE_RS04525 b1f5d8cd214b2cc6a53560602b8d7af1 241 Pfam PF00977 Histidine biosynthesis protein 2 229 9.0E-75 T 23-04-2016 IPR006062 Histidine biosynthesis GO:0000105 NIDE_RS04525 b1f5d8cd214b2cc6a53560602b8d7af1 241 SUPERFAMILY SSF51366 1 235 4.04E-69 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 NIDE_RS14425 c57033cada0969fcf8638cc2c32ebf30 67 Pfam PF03459 TOBE domain 4 64 4.7E-14 T 23-04-2016 IPR005116 Transport-associated OB, type 1 NIDE_RS14425 c57033cada0969fcf8638cc2c32ebf30 67 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 1 66 6.5E-18 T 23-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 NIDE_RS14425 c57033cada0969fcf8638cc2c32ebf30 67 SUPERFAMILY SSF50331 1 66 2.13E-18 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal NIDE_RS14425 c57033cada0969fcf8638cc2c32ebf30 67 Gene3D G3DSA:2.40.50.100 1 66 1.0E-22 T 23-04-2016 NIDE_RS11700 b9596f59292126dc472d93c73e7e4429 455 Gene3D G3DSA:3.90.1150.10 344 448 6.3E-51 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS11700 b9596f59292126dc472d93c73e7e4429 455 Gene3D G3DSA:3.90.1150.10 3 63 6.3E-51 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS11700 b9596f59292126dc472d93c73e7e4429 455 Pfam PF00202 Aminotransferase class-III 23 444 1.8E-120 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS11700 b9596f59292126dc472d93c73e7e4429 455 PANTHER PTHR11986 2 452 2.3E-211 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS11700 b9596f59292126dc472d93c73e7e4429 455 PANTHER PTHR11986:SF8 2 452 2.3E-211 T 23-04-2016 NIDE_RS11700 b9596f59292126dc472d93c73e7e4429 455 Gene3D G3DSA:3.40.640.10 64 342 6.5E-98 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS11700 b9596f59292126dc472d93c73e7e4429 455 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 447 52.026 T 23-04-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 NIDE_RS11700 b9596f59292126dc472d93c73e7e4429 455 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 13 444 2.3E-167 T 23-04-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 NIDE_RS11700 b9596f59292126dc472d93c73e7e4429 455 SUPERFAMILY SSF53383 8 444 9.68E-131 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS11700 b9596f59292126dc472d93c73e7e4429 455 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 252 289 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS14030 c5dc4afb079ff059144ff6289bb93611 68 PANTHER PTHR34472 2 66 1.2E-19 T 23-04-2016 NIDE_RS14030 c5dc4afb079ff059144ff6289bb93611 68 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 2.4E-22 T 23-04-2016 IPR010035 ThiS, thiamine-biosynthesis NIDE_RS14030 c5dc4afb079ff059144ff6289bb93611 68 Gene3D G3DSA:3.10.20.30 3 66 1.9E-23 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS14030 c5dc4afb079ff059144ff6289bb93611 68 SUPERFAMILY SSF54285 3 65 8.0E-17 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NIDE_RS14030 c5dc4afb079ff059144ff6289bb93611 68 Pfam PF02597 ThiS family 4 66 4.2E-13 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 NIDE_RS14030 c5dc4afb079ff059144ff6289bb93611 68 PANTHER PTHR34472:SF1 2 66 1.2E-19 T 23-04-2016 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.0E-45 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 SUPERFAMILY SSF74731 2 117 7.33E-44 T 23-04-2016 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 PRINTS PR00062 Ribosomal protein L20 signature 42 71 5.8E-36 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 PRINTS PR00062 Ribosomal protein L20 signature 12 41 5.8E-36 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 PRINTS PR00062 Ribosomal protein L20 signature 75 101 5.8E-36 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 26.957 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 23 72 4.0E-12 T 23-04-2016 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 PANTHER PTHR10986:SF12 2 117 7.2E-51 T 23-04-2016 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 PANTHER PTHR10986 2 117 7.2E-51 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 Pfam PF00453 Ribosomal protein L20 3 109 2.2E-42 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 NIDE_RS01840 737aae44010d3fa023396708c2673e00 122 Gene3D G3DSA:1.10.1900.20 55 117 4.0E-28 T 23-04-2016 NIDE_RS17000 d57d01b2873b6ed7a3b2261f5acc84d8 82 PANTHER PTHR34137 1 80 1.1E-20 T 23-04-2016 NIDE_RS17000 d57d01b2873b6ed7a3b2261f5acc84d8 82 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 5 65 15.14 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 NIDE_RS17000 d57d01b2873b6ed7a3b2261f5acc84d8 82 SUPERFAMILY SSF116842 3 66 3.01E-20 T 23-04-2016 NIDE_RS17000 d57d01b2873b6ed7a3b2261f5acc84d8 82 Gene3D G3DSA:1.10.287.1040 3 67 2.4E-25 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 NIDE_RS17000 d57d01b2873b6ed7a3b2261f5acc84d8 82 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 46 2.0E-7 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 NIDE_RS17000 d57d01b2873b6ed7a3b2261f5acc84d8 82 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 5 61 5.5E-23 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 NIDE_RS17000 d57d01b2873b6ed7a3b2261f5acc84d8 82 Pfam PF02609 Exonuclease VII small subunit 6 57 4.8E-22 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 NIDE_RS05775 ccdaca422d6fc02f0e0e829bb05b96cf 171 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 4 168 7.8E-67 T 23-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 NIDE_RS05775 ccdaca422d6fc02f0e0e829bb05b96cf 171 PANTHER PTHR32315 4 170 1.6E-76 T 23-04-2016 NIDE_RS05775 ccdaca422d6fc02f0e0e829bb05b96cf 171 SUPERFAMILY SSF53271 2 170 4.06E-48 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS05775 ccdaca422d6fc02f0e0e829bb05b96cf 171 Pfam PF00156 Phosphoribosyl transferase domain 27 143 7.9E-14 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 NIDE_RS05775 ccdaca422d6fc02f0e0e829bb05b96cf 171 Gene3D G3DSA:3.40.50.2020 4 170 9.6E-65 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS05775 ccdaca422d6fc02f0e0e829bb05b96cf 171 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 3 170 36.848 T 23-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 PANTHER PTHR22602:SF0 1 317 2.6E-34 T 23-04-2016 NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 PANTHER PTHR22602 1 317 2.6E-34 T 23-04-2016 NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 SUPERFAMILY SSF101790 283 361 6.54E-16 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 Pfam PF01571 Aminomethyltransferase folate-binding domain 6 255 5.5E-58 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 Gene3D G3DSA:2.40.30.110 282 355 1.1E-14 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 Gene3D G3DSA:3.30.1360.120 140 234 9.9E-35 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 Gene3D G3DSA:3.30.1360.120 2 51 9.9E-35 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 Gene3D G3DSA:3.30.70.1400 52 127 8.2E-16 T 23-04-2016 NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 264 356 9.7E-16 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 PIRSF PIRSF006487 1 363 1.1E-61 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 SUPERFAMILY SSF103025 1 279 1.26E-77 T 23-04-2016 NIDE_RS04885 3d238742360ddc9d7280968f18b1ec7a 363 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 228 288 9.1E-20 T 23-04-2016 IPR017703 YgfZ/GcvT conserved site NIDE_RS06770 058066a2fe0a1e316b282c34cf585103 249 SUPERFAMILY SSF52518 2 210 1.77E-41 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS06770 058066a2fe0a1e316b282c34cf585103 249 PANTHER PTHR32154 1 240 8.3E-68 T 23-04-2016 NIDE_RS06770 058066a2fe0a1e316b282c34cf585103 249 PANTHER PTHR32154:SF4 1 240 8.3E-68 T 23-04-2016 NIDE_RS06770 058066a2fe0a1e316b282c34cf585103 249 Gene3D G3DSA:3.40.50.970 2 222 2.0E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS06770 058066a2fe0a1e316b282c34cf585103 249 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 43 185 4.6E-20 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NIDE_RS20145 5ab3bbd67b9ec94e6cd14f91d4448a68 493 Pfam PF00691 OmpA family 359 460 1.5E-15 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20145 5ab3bbd67b9ec94e6cd14f91d4448a68 493 PANTHER PTHR30329 311 490 4.9E-29 T 23-04-2016 NIDE_RS20145 5ab3bbd67b9ec94e6cd14f91d4448a68 493 SUPERFAMILY SSF103088 346 466 6.02E-28 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20145 5ab3bbd67b9ec94e6cd14f91d4448a68 493 PANTHER PTHR30329:SF4 311 490 4.9E-29 T 23-04-2016 NIDE_RS20145 5ab3bbd67b9ec94e6cd14f91d4448a68 493 Gene3D G3DSA:3.30.1330.60 337 466 5.8E-30 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS04670 9fe51bbe58ef0c507ca0685b6e765b9e 293 PIRSF PIRSF038471 5 281 9.7E-64 T 23-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 NIDE_RS04670 9fe51bbe58ef0c507ca0685b6e765b9e 293 PANTHER PTHR34138 2 269 9.2E-55 T 23-04-2016 NIDE_RS04670 9fe51bbe58ef0c507ca0685b6e765b9e 293 PANTHER PTHR34138:SF1 2 269 9.2E-55 T 23-04-2016 NIDE_RS04670 9fe51bbe58ef0c507ca0685b6e765b9e 293 Pfam PF04085 rod shape-determining protein MreC 124 269 3.0E-42 T 23-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 NIDE_RS04670 9fe51bbe58ef0c507ca0685b6e765b9e 293 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 58 271 1.5E-37 T 23-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 NIDE_RS13790 92edf0cb3ee8d175e71c75434059c2eb 315 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 4 305 49.415 T 23-04-2016 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00010+1.1.1.27|KEGG: 00051+1.1.1.271|KEGG: 00270+1.1.1.27|KEGG: 00520+1.1.1.271|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-66|MetaCyc: PWY-6901|UniPathway: UPA00128 NIDE_RS13790 92edf0cb3ee8d175e71c75434059c2eb 315 PANTHER PTHR10366 6 303 1.3E-151 T 23-04-2016 NIDE_RS13790 92edf0cb3ee8d175e71c75434059c2eb 315 Gene3D G3DSA:3.40.50.720 6 207 4.2E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13790 92edf0cb3ee8d175e71c75434059c2eb 315 PANTHER PTHR10366:SF246 6 303 1.3E-151 T 23-04-2016 NIDE_RS13790 92edf0cb3ee8d175e71c75434059c2eb 315 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 237 2.3E-75 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 NIDE_RS13790 92edf0cb3ee8d175e71c75434059c2eb 315 SUPERFAMILY SSF51735 5 306 1.98E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13790 92edf0cb3ee8d175e71c75434059c2eb 315 Gene3D G3DSA:3.90.25.10 208 231 6.5E-13 T 23-04-2016 NIDE_RS13790 92edf0cb3ee8d175e71c75434059c2eb 315 Gene3D G3DSA:3.90.25.10 284 306 6.5E-13 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Pfam PF05000 RNA polymerase Rpb1, domain 4 661 745 9.3E-16 T 23-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 PANTHER PTHR19376:SF32 4 925 0.0 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 PANTHER PTHR19376:SF32 963 1148 0.0 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 PANTHER PTHR19376 4 925 0.0 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 PANTHER PTHR19376 963 1148 0.0 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 SMART SM00663 236 515 2.4E-182 T 23-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 20 1026 0.0 T 23-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Gene3D G3DSA:2.40.40.20 350 377 8.2E-37 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Gene3D G3DSA:2.40.40.20 418 489 8.2E-37 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Pfam PF04997 RNA polymerase Rpb1, domain 1 17 343 2.6E-86 T 23-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 SUPERFAMILY SSF64484 16 926 0.0 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 SUPERFAMILY SSF64484 1124 1357 0.0 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 PANTHER PTHR19376 1164 1252 0.0 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 15 1366 10.525 T 23-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 PANTHER PTHR19376:SF32 1293 1353 0.0 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 PANTHER PTHR19376 1293 1353 0.0 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 PANTHER PTHR19376:SF32 1164 1252 0.0 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Pfam PF00623 RNA polymerase Rpb1, domain 2 345 386 9.6E-8 T 23-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Pfam PF00623 RNA polymerase Rpb1, domain 2 388 486 3.9E-28 T 23-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Pfam PF04983 RNA polymerase Rpb1, domain 3 490 632 4.9E-28 T 23-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Gene3D G3DSA:2.40.50.100 972 1011 2.8E-6 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Gene3D G3DSA:2.40.50.100 1146 1200 3.3E-10 T 23-04-2016 NIDE_RS06040 f0886088ccd84e99bc7a3f75f117431d 1396 Pfam PF04998 RNA polymerase Rpb1, domain 5 748 1304 2.0E-72 T 23-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS20570 d103b92bc98e8651486fffe1aae12f68 168 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 142 158 1.2E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NIDE_RS20570 d103b92bc98e8651486fffe1aae12f68 168 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 127 142 1.2E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NIDE_RS20570 d103b92bc98e8651486fffe1aae12f68 168 SMART SM00342 75 158 4.5E-26 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NIDE_RS20570 d103b92bc98e8651486fffe1aae12f68 168 PANTHER PTHR11019 63 166 5.1E-26 T 23-04-2016 NIDE_RS20570 d103b92bc98e8651486fffe1aae12f68 168 Pfam PF12833 Helix-turn-helix domain 82 160 2.7E-22 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NIDE_RS20570 d103b92bc98e8651486fffe1aae12f68 168 Gene3D G3DSA:1.10.10.60 113 161 2.7E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS20570 d103b92bc98e8651486fffe1aae12f68 168 SUPERFAMILY SSF46689 64 109 5.29E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS20570 d103b92bc98e8651486fffe1aae12f68 168 SUPERFAMILY SSF46689 113 161 1.66E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS20570 d103b92bc98e8651486fffe1aae12f68 168 Gene3D G3DSA:1.10.10.60 68 111 3.9E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 SUPERFAMILY SSF52540 100 303 5.59E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 PANTHER PTHR11564:SF16 2 304 3.3E-132 T 23-04-2016 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 Pfam PF00448 SRP54-type protein, GTPase domain 104 304 2.0E-78 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 278 291 - T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 Gene3D G3DSA:1.20.120.140 33 115 2.3E-22 T 23-04-2016 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 SMART SM00382 103 295 7.7E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 Gene3D G3DSA:3.40.50.300 116 304 2.0E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 PANTHER PTHR11564 2 304 3.3E-132 T 23-04-2016 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 Pfam PF02881 SRP54-type protein, helical bundle domain 23 80 3.5E-6 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 SMART SM00963 7 86 3.7E-16 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 33 304 1.7E-108 T 23-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 29 304 58.685 T 23-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 SUPERFAMILY SSF47364 2 79 1.7E-14 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS18630 6f787de654ea2774662dd843e3912bc0 304 SMART SM00962 104 304 4.3E-113 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS19715 c2f42027515b103b49a9b79b65cc4dc9 294 SUPERFAMILY SSF56235 8 287 2.06E-71 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS19715 c2f42027515b103b49a9b79b65cc4dc9 294 PANTHER PTHR10188:SF17 9 276 1.1E-83 T 23-04-2016 NIDE_RS19715 c2f42027515b103b49a9b79b65cc4dc9 294 Pfam PF01112 Asparaginase 6 289 2.3E-79 T 23-04-2016 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 NIDE_RS19715 c2f42027515b103b49a9b79b65cc4dc9 294 PANTHER PTHR10188 9 276 1.1E-83 T 23-04-2016 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 NIDE_RS08780 2620203030a745151c3cb788954f7a0e 238 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 64 219 3.9E-19 T 23-04-2016 IPR019288 Predicted 3'-5' exonuclease, PolB-like NIDE_RS08780 2620203030a745151c3cb788954f7a0e 238 SUPERFAMILY SSF53098 82 219 1.79E-22 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS08780 2620203030a745151c3cb788954f7a0e 238 Gene3D G3DSA:3.30.420.10 83 212 5.7E-14 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS02350 5dc2d27775b64919c4118e239dcb9b52 228 Gene3D G3DSA:3.40.50.150 5 186 2.5E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02350 5dc2d27775b64919c4118e239dcb9b52 228 Pfam PF08241 Methyltransferase domain 45 140 3.9E-22 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS02350 5dc2d27775b64919c4118e239dcb9b52 228 PANTHER PTHR10108 5 141 8.0E-32 T 23-04-2016 NIDE_RS02350 5dc2d27775b64919c4118e239dcb9b52 228 SUPERFAMILY SSF53335 7 192 2.15E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS15235 bb9bce511351101e14bd75d738071bde 202 Gene3D G3DSA:1.10.260.40 24 123 2.5E-20 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS15235 bb9bce511351101e14bd75d738071bde 202 PANTHER PTHR10245 14 197 2.7E-33 T 23-04-2016 NIDE_RS15235 bb9bce511351101e14bd75d738071bde 202 SUPERFAMILY SSF47413 21 86 4.5E-15 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS15235 bb9bce511351101e14bd75d738071bde 202 SMART SM00530 27 82 3.6E-11 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS15235 bb9bce511351101e14bd75d738071bde 202 Pfam PF01381 Helix-turn-helix 28 82 1.1E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS15235 bb9bce511351101e14bd75d738071bde 202 SUPERFAMILY SSF51182 75 197 4.78E-26 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS15235 bb9bce511351101e14bd75d738071bde 202 PANTHER PTHR10245:SF53 14 197 2.7E-33 T 23-04-2016 NIDE_RS15235 bb9bce511351101e14bd75d738071bde 202 Pfam PF07883 Cupin domain 127 196 6.3E-12 T 23-04-2016 IPR013096 Cupin 2, conserved barrel NIDE_RS15235 bb9bce511351101e14bd75d738071bde 202 Gene3D G3DSA:2.60.120.10 124 198 1.6E-19 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 31 183 7.3E-26 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 201 336 1.7E-25 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 253 268 3.2E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 226 244 3.2E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 204 224 3.2E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 SUPERFAMILY SSF52540 31 193 9.63E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 PANTHER PTHR11649:SF5 27 462 1.9E-136 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 Hamap MF_00195 GTPase Der [der]. 28 464 37.162 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 PANTHER PTHR11649 27 462 1.9E-136 T 23-04-2016 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 SUPERFAMILY SSF52540 166 463 1.39E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 PIRSF PIRSF006485 27 464 9.4E-156 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 Gene3D G3DSA:3.30.300.20 385 464 4.3E-27 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 379 462 5.7E-26 T 23-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 29 461 6.8E-160 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 Gene3D G3DSA:3.40.50.300 199 384 1.6E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 Gene3D G3DSA:3.40.50.300 27 196 2.3E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 Pfam PF01926 50S ribosome-binding GTPase 31 146 2.0E-26 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS19345 447c89f7ba6b7a43e3309b47ff71e708 464 Pfam PF01926 50S ribosome-binding GTPase 203 321 1.8E-24 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS05345 0ee9d89b663939394976cf87e87e6b33 402 SUPERFAMILY SSF51556 58 355 1.5E-86 T 23-04-2016 IPR032466 Metal-dependent hydrolase NIDE_RS05345 0ee9d89b663939394976cf87e87e6b33 402 PANTHER PTHR11271:SF33 1 395 2.7E-88 T 23-04-2016 NIDE_RS05345 0ee9d89b663939394976cf87e87e6b33 402 Gene3D G3DSA:3.20.20.140 60 339 2.2E-84 T 23-04-2016 NIDE_RS05345 0ee9d89b663939394976cf87e87e6b33 402 Gene3D G3DSA:2.30.40.10 340 365 2.9E-6 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 NIDE_RS05345 0ee9d89b663939394976cf87e87e6b33 402 SUPERFAMILY SSF51338 3 58 9.77E-18 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 NIDE_RS05345 0ee9d89b663939394976cf87e87e6b33 402 SUPERFAMILY SSF51338 355 397 9.77E-18 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 NIDE_RS05345 0ee9d89b663939394976cf87e87e6b33 402 Gene3D G3DSA:2.30.40.10 366 396 2.8E-24 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 NIDE_RS05345 0ee9d89b663939394976cf87e87e6b33 402 Gene3D G3DSA:2.30.40.10 2 59 2.8E-24 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 NIDE_RS05345 0ee9d89b663939394976cf87e87e6b33 402 PANTHER PTHR11271 1 395 2.7E-88 T 23-04-2016 NIDE_RS05345 0ee9d89b663939394976cf87e87e6b33 402 Pfam PF01979 Amidohydrolase family 54 395 1.9E-46 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 NIDE_RS01360 235dccc62e0ce4cf75f758e54da8bac2 317 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 1 301 32.083 T 23-04-2016 IPR023009 Tyrosine recombinase XerC/XerD NIDE_RS01360 235dccc62e0ce4cf75f758e54da8bac2 317 Pfam PF00589 Phage integrase family 114 286 9.2E-42 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS01360 235dccc62e0ce4cf75f758e54da8bac2 317 PANTHER PTHR30349 1 315 1.1E-87 T 23-04-2016 NIDE_RS01360 235dccc62e0ce4cf75f758e54da8bac2 317 SUPERFAMILY SSF56349 6 290 1.62E-53 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS01360 235dccc62e0ce4cf75f758e54da8bac2 317 PANTHER PTHR30349:SF5 1 315 1.1E-87 T 23-04-2016 NIDE_RS01360 235dccc62e0ce4cf75f758e54da8bac2 317 Gene3D G3DSA:1.10.443.10 114 292 1.5E-52 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS01360 235dccc62e0ce4cf75f758e54da8bac2 317 Gene3D G3DSA:1.10.150.130 1 102 8.7E-24 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal NIDE_RS01360 235dccc62e0ce4cf75f758e54da8bac2 317 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 90 6.9E-15 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 Gene3D G3DSA:3.40.50.970 2 364 1.0E-19 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 Hamap MF_01403 Probable phosphoketolase. 8 789 41.221 T 23-04-2016 IPR023962 Probable phosphoketolase NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 PIRSF PIRSF017245 1 789 0.0 T 23-04-2016 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 ProSitePatterns PS60003 Phosphoketolase signature 2. 160 178 - T 23-04-2016 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 ProSitePatterns PS60002 Phosphoketolase signature 1. 147 153 - T 23-04-2016 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 PANTHER PTHR31273 1 791 0.0 T 23-04-2016 NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 PANTHER PTHR31273:SF0 1 791 0.0 T 23-04-2016 NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 403 575 1.3E-88 T 23-04-2016 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 Pfam PF09363 XFP C-terminal domain 586 787 2.4E-97 T 23-04-2016 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 Pfam PF09364 XFP N-terminal domain 12 386 4.7E-186 T 23-04-2016 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 SUPERFAMILY SSF52518 378 592 2.65E-27 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS16090 f1342448799a27302b379019fde4d7fa 791 SUPERFAMILY SSF52518 2 370 6.6E-77 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS19510 6f633d8f43e7a05b7bb72c77f66c84b1 278 Pfam PF13560 Helix-turn-helix domain 6 65 1.9E-8 T 23-04-2016 NIDE_RS19510 6f633d8f43e7a05b7bb72c77f66c84b1 278 Pfam PF00753 Metallo-beta-lactamase superfamily 99 261 5.4E-25 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS19510 6f633d8f43e7a05b7bb72c77f66c84b1 278 SUPERFAMILY SSF56281 97 277 1.97E-47 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS19510 6f633d8f43e7a05b7bb72c77f66c84b1 278 SUPERFAMILY SSF47413 6 66 4.1E-9 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS19510 6f633d8f43e7a05b7bb72c77f66c84b1 278 SMART SM00849 95 261 1.1E-36 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS19510 6f633d8f43e7a05b7bb72c77f66c84b1 278 Gene3D G3DSA:3.60.15.10 99 277 1.2E-48 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS19510 6f633d8f43e7a05b7bb72c77f66c84b1 278 PANTHER PTHR11935 99 276 4.3E-41 T 23-04-2016 NIDE_RS19510 6f633d8f43e7a05b7bb72c77f66c84b1 278 SMART SM00530 10 65 4.2E-4 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS19510 6f633d8f43e7a05b7bb72c77f66c84b1 278 Gene3D G3DSA:1.10.260.40 5 63 7.8E-9 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS00205 2744856f2be439307f19211fdc5d9113 795 SUPERFAMILY SSF74650 37 272 5.34E-42 T 23-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 NIDE_RS00205 2744856f2be439307f19211fdc5d9113 795 Gene3D G3DSA:1.50.10.10 320 700 6.5E-134 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 NIDE_RS00205 2744856f2be439307f19211fdc5d9113 795 SUPERFAMILY SSF48208 274 765 3.95E-120 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS00205 2744856f2be439307f19211fdc5d9113 795 Gene3D G3DSA:2.70.98.40 37 272 9.8E-50 T 23-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 NIDE_RS00205 2744856f2be439307f19211fdc5d9113 795 PIRSF PIRSF036289 33 779 4.9E-217 T 23-04-2016 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase NIDE_RS00205 2744856f2be439307f19211fdc5d9113 795 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 43 271 7.0E-51 T 23-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 NIDE_RS00205 2744856f2be439307f19211fdc5d9113 795 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 325 714 4.1E-125 T 23-04-2016 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 NIDE_RS00205 2744856f2be439307f19211fdc5d9113 795 PANTHER PTHR11051 32 746 6.4E-156 T 23-04-2016 NIDE_RS00205 2744856f2be439307f19211fdc5d9113 795 Gene3D G3DSA:2.60.420.10 701 771 1.7E-20 T 23-04-2016 NIDE_RS00205 2744856f2be439307f19211fdc5d9113 795 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 719 770 4.7E-15 T 23-04-2016 IPR005194 Glycoside hydrolase family 65, C-terminal NIDE_RS15715 d4d71dcea14425f1d2e4fb77e9c3cdb8 323 SMART SM00382 35 214 1.8E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS15715 d4d71dcea14425f1d2e4fb77e9c3cdb8 323 SUPERFAMILY SSF52540 4 230 6.61E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15715 d4d71dcea14425f1d2e4fb77e9c3cdb8 323 PANTHER PTHR24220 5 236 5.3E-104 T 23-04-2016 NIDE_RS15715 d4d71dcea14425f1d2e4fb77e9c3cdb8 323 PANTHER PTHR24220:SF160 5 236 5.3E-104 T 23-04-2016 NIDE_RS15715 d4d71dcea14425f1d2e4fb77e9c3cdb8 323 Gene3D G3DSA:3.40.50.300 3 234 1.8E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15715 d4d71dcea14425f1d2e4fb77e9c3cdb8 323 Pfam PF00005 ABC transporter 26 167 1.1E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS15715 d4d71dcea14425f1d2e4fb77e9c3cdb8 323 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 440 195.977 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 Gene3D G3DSA:3.40.440.10 2 93 2.0E-70 T 23-04-2016 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 Gene3D G3DSA:3.40.440.10 196 265 2.0E-70 T 23-04-2016 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 Gene3D G3DSA:1.10.300.10 101 195 2.4E-34 T 23-04-2016 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 23-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 Pfam PF00709 Adenylosuccinate synthetase 5 422 1.9E-176 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 SUPERFAMILY SSF52540 1 428 2.02E-169 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 PANTHER PTHR11846 5 427 3.4E-234 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 SMART SM00788 3 423 1.4E-269 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 428 1.3E-172 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 132 143 - T 23-04-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 NIDE_RS16240 291d6f30c5d6040e7523fac466dd17e3 440 Gene3D G3DSA:3.90.170.10 266 424 3.5E-67 T 23-04-2016 NIDE_RS09190 a87a446367ce64c71339f378feff1af2 491 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 179 479 4.3E-66 T 23-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath NIDE_RS09190 a87a446367ce64c71339f378feff1af2 491 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 1 91 5.2E-9 T 23-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 NIDE_RS09190 a87a446367ce64c71339f378feff1af2 491 PANTHER PTHR35565 179 479 5.4E-62 T 23-04-2016 NIDE_RS11325 9dac7ca65497cbaa8724a12d2513bb93 204 Pfam PF02581 Thiamine monophosphate synthase/TENI 3 179 8.8E-62 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 NIDE_RS11325 9dac7ca65497cbaa8724a12d2513bb93 204 PANTHER PTHR20857:SF15 1 192 4.8E-67 T 23-04-2016 NIDE_RS11325 9dac7ca65497cbaa8724a12d2513bb93 204 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 3 190 6.0E-63 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 NIDE_RS11325 9dac7ca65497cbaa8724a12d2513bb93 204 Gene3D G3DSA:3.20.20.70 3 196 2.4E-69 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS11325 9dac7ca65497cbaa8724a12d2513bb93 204 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 1 197 27.326 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 NIDE_RS11325 9dac7ca65497cbaa8724a12d2513bb93 204 PANTHER PTHR20857 1 192 4.8E-67 T 23-04-2016 NIDE_RS11325 9dac7ca65497cbaa8724a12d2513bb93 204 SUPERFAMILY SSF51391 9 195 7.46E-65 T 23-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 NIDE_RS10520 8ae902f4029202f40d23ea5e1382c927 124 PANTHER PTHR30034 40 123 4.1E-30 T 23-04-2016 NIDE_RS10520 8ae902f4029202f40d23ea5e1382c927 124 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 41 116 9.7E-33 T 23-04-2016 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 NIDE_RS10520 8ae902f4029202f40d23ea5e1382c927 124 PRINTS PR00956 Flagellar motor switch protein FliN signature 44 60 1.8E-27 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NIDE_RS10520 8ae902f4029202f40d23ea5e1382c927 124 PRINTS PR00956 Flagellar motor switch protein FliN signature 90 105 1.8E-27 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NIDE_RS10520 8ae902f4029202f40d23ea5e1382c927 124 PRINTS PR00956 Flagellar motor switch protein FliN signature 61 77 1.8E-27 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NIDE_RS10520 8ae902f4029202f40d23ea5e1382c927 124 PRINTS PR00956 Flagellar motor switch protein FliN signature 77 90 1.8E-27 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 NIDE_RS10520 8ae902f4029202f40d23ea5e1382c927 124 PANTHER PTHR30034:SF1 40 123 4.1E-30 T 23-04-2016 NIDE_RS10520 8ae902f4029202f40d23ea5e1382c927 124 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 45 114 5.0E-25 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) NIDE_RS10520 8ae902f4029202f40d23ea5e1382c927 124 Gene3D G3DSA:2.30.330.10 37 123 2.0E-36 T 23-04-2016 NIDE_RS10520 8ae902f4029202f40d23ea5e1382c927 124 SUPERFAMILY SSF101801 41 122 1.83E-25 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 Gene3D G3DSA:3.40.1190.10 94 314 2.4E-77 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 7 451 1.0E-163 T 23-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 Pfam PF01225 Mur ligase family, catalytic domain 7 104 1.4E-26 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 SUPERFAMILY SSF51984 6 92 2.35E-28 T 23-04-2016 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 Gene3D G3DSA:3.40.50.720 6 92 9.7E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 Pfam PF08245 Mur ligase middle domain 110 292 3.9E-28 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 SUPERFAMILY SSF53244 312 457 1.47E-45 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 PANTHER PTHR23135 1 447 7.2E-204 T 23-04-2016 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 5 460 42.744 T 23-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 SUPERFAMILY SSF53623 91 311 1.83E-66 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 PANTHER PTHR23135:SF5 1 447 7.2E-204 T 23-04-2016 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 398 1.4E-21 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS03495 ef7cdb7550cd69d146b12a2ea2c36748 460 Gene3D G3DSA:3.90.190.20 315 458 8.6E-54 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 Pfam PF00448 SRP54-type protein, GTPase domain 100 299 9.7E-70 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 TIGRFAM TIGR00959 ffh: signal recognition particle protein 3 430 1.1E-171 T 23-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 SMART SM00963 1 86 3.7E-33 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 Gene3D G3DSA:1.20.120.140 3 89 6.8E-34 T 23-04-2016 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 SUPERFAMILY SSF52540 42 358 1.66E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 SMART SM00962 100 299 6.8E-103 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 4.7E-23 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 446 33.353 T 23-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 Pfam PF02978 Signal peptide binding domain 330 427 1.4E-30 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 272 285 - T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 SUPERFAMILY SSF47446 330 432 1.47E-33 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 PANTHER PTHR11564:SF7 1 436 3.1E-239 T 23-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 PANTHER PTHR11564 1 436 3.1E-239 T 23-04-2016 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 Gene3D G3DSA:1.10.260.30 330 433 5.0E-36 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 Gene3D G3DSA:3.40.50.300 95 300 1.5E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14090 cc3f389187e3763cb28eb65f14b0f2aa 449 SMART SM00382 99 304 2.7E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS13235 a1e0556259df746e1ceb765ff39e30d8 281 PANTHER PTHR30413 1 281 4.0E-89 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS13235 a1e0556259df746e1ceb765ff39e30d8 281 PANTHER PTHR30413:SF8 1 281 4.0E-89 T 23-04-2016 NIDE_RS13235 a1e0556259df746e1ceb765ff39e30d8 281 Pfam PF01061 ABC-2 type transporter 36 241 2.3E-25 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 NIDE_RS19525 944252f51f8b6d861e4a1cf09d2e7be8 216 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 32 180 7.3E-14 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS19525 944252f51f8b6d861e4a1cf09d2e7be8 216 Gene3D G3DSA:1.10.150.240 25 85 2.5E-18 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 NIDE_RS19525 944252f51f8b6d861e4a1cf09d2e7be8 216 PANTHER PTHR18901:SF14 1 214 2.2E-44 T 23-04-2016 NIDE_RS19525 944252f51f8b6d861e4a1cf09d2e7be8 216 PANTHER PTHR18901 1 214 2.2E-44 T 23-04-2016 NIDE_RS19525 944252f51f8b6d861e4a1cf09d2e7be8 216 Gene3D G3DSA:3.40.50.1000 2 24 4.8E-35 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19525 944252f51f8b6d861e4a1cf09d2e7be8 216 Gene3D G3DSA:3.40.50.1000 86 215 4.8E-35 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19525 944252f51f8b6d861e4a1cf09d2e7be8 216 Pfam PF13419 Haloacid dehalogenase-like hydrolase 10 186 5.8E-28 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19525 944252f51f8b6d861e4a1cf09d2e7be8 216 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 89 186 1.5E-8 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS19525 944252f51f8b6d861e4a1cf09d2e7be8 216 SUPERFAMILY SSF56784 6 214 1.23E-49 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 Gene3D G3DSA:1.10.1740.10 301 382 1.0E-31 T 23-04-2016 NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 SUPERFAMILY SSF51735 2 148 5.26E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 Pfam PF13288 DXP reductoisomerase C-terminal domain 259 375 1.0E-42 T 23-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 SUPERFAMILY SSF69055 289 382 1.96E-33 T 23-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 SUPERFAMILY SSF55347 124 262 6.87E-58 T 23-04-2016 NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 144 227 4.5E-39 T 23-04-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 130 1.2E-44 T 23-04-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 Gene3D G3DSA:3.40.50.720 1 148 9.4E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 381 4.0E-156 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 PIRSF PIRSF006205 1 386 2.6E-159 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 PANTHER PTHR30525 1 381 9.0E-223 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS06980 de7b9c4efc67a4bb4df66d901132919d 386 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 380 47.233 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS07520 57ec5ebf6d3cfde44984de5cffdc99eb 443 PANTHER PTHR10655 117 305 2.9E-23 T 23-04-2016 NIDE_RS07520 57ec5ebf6d3cfde44984de5cffdc99eb 443 Gene3D G3DSA:3.40.50.1820 123 305 1.6E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS07520 57ec5ebf6d3cfde44984de5cffdc99eb 443 SUPERFAMILY SSF53474 117 304 3.08E-36 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 Gene3D G3DSA:1.10.287.130 599 647 1.8E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 SMART SM00091 445 513 1.4E-4 T 23-04-2016 IPR000014 PAS domain NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 Pfam PF02743 Cache domain 52 319 1.0E-16 T 23-04-2016 IPR033479 Double Cache domain 1 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 SUPERFAMILY SSF47384 593 662 1.08E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 SUPERFAMILY SSF55785 448 510 4.19E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 SUPERFAMILY SSF158472 376 423 2.48E-7 T 23-04-2016 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 Gene3D G3DSA:3.30.565.10 648 813 1.8E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 SMART SM00387 706 814 4.4E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 SMART SM00304 375 427 6.6E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 Gene3D G3DSA:3.30.450.20 160 221 1.2E-4 T 23-04-2016 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 Gene3D G3DSA:3.30.450.20 447 509 8.0E-9 T 23-04-2016 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 SMART SM00388 599 664 5.2E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 PANTHER PTHR24423 1 16 2.1E-62 T 23-04-2016 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 PANTHER PTHR24423 429 517 2.1E-62 T 23-04-2016 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 PANTHER PTHR24423 547 813 2.1E-62 T 23-04-2016 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 774 792 2.6E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 761 771 2.6E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 798 811 2.6E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 743 757 2.6E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 Pfam PF00512 His Kinase A (phospho-acceptor) domain 601 655 2.0E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 SUPERFAMILY SSF55874 654 812 1.7E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 708 813 7.5E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 Gene3D G3DSA:3.30.450.20 222 352 5.7E-6 T 23-04-2016 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 Pfam PF00989 PAS fold 449 509 6.6E-8 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS16420 78c10af5ffa87858f553cdbd7d792980 826 Pfam PF00672 HAMP domain 356 423 2.5E-15 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS04685 66189d14413978ec30193d2c00adbe6a 372 Pfam PF01098 Cell cycle protein 22 366 1.5E-99 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 NIDE_RS04685 66189d14413978ec30193d2c00adbe6a 372 PANTHER PTHR30474 1 367 3.8E-133 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 NIDE_RS04685 66189d14413978ec30193d2c00adbe6a 372 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 325 349 - T 23-04-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 NIDE_RS04685 66189d14413978ec30193d2c00adbe6a 372 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 367 4.7E-120 T 23-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 NIDE_RS04685 66189d14413978ec30193d2c00adbe6a 372 PANTHER PTHR30474:SF1 1 367 3.8E-133 T 23-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 NIDE_RS16785 15f068f8c3cebad40757badd72f654fa 236 Gene3D G3DSA:1.20.144.10 4 180 5.9E-20 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS16785 15f068f8c3cebad40757badd72f654fa 236 SUPERFAMILY SSF48317 3 186 1.13E-24 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS16785 15f068f8c3cebad40757badd72f654fa 236 Pfam PF01569 PAP2 superfamily 62 180 3.3E-16 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS16785 15f068f8c3cebad40757badd72f654fa 236 SMART SM00014 60 177 7.0E-13 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS10105 06e0aeec006fc191a35170eea8c5c9de 454 Pfam PF00171 Aldehyde dehydrogenase family 11 289 9.7E-14 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS10105 06e0aeec006fc191a35170eea8c5c9de 454 SUPERFAMILY SSF53720 10 436 7.59E-85 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 NIDE_RS10105 06e0aeec006fc191a35170eea8c5c9de 454 Gene3D G3DSA:3.40.309.10 237 391 4.3E-28 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 NIDE_RS10105 06e0aeec006fc191a35170eea8c5c9de 454 Gene3D G3DSA:3.40.605.10 9 235 2.7E-71 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS10105 06e0aeec006fc191a35170eea8c5c9de 454 Gene3D G3DSA:3.40.605.10 394 436 2.7E-71 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS10105 06e0aeec006fc191a35170eea8c5c9de 454 PANTHER PTHR11063 17 436 8.3E-106 T 23-04-2016 NIDE_RS10105 06e0aeec006fc191a35170eea8c5c9de 454 PIRSF PIRSF000151 5 437 1.9E-120 T 23-04-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 NIDE_RS10105 06e0aeec006fc191a35170eea8c5c9de 454 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 9 436 31.724 T 23-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 NIDE_RS10105 06e0aeec006fc191a35170eea8c5c9de 454 PANTHER PTHR11063:SF8 17 436 8.3E-106 T 23-04-2016 NIDE_RS17730 65d1d22fb335e829ba47b389cac47a64 441 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 262 344 5.2E-10 T 23-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 NIDE_RS17730 65d1d22fb335e829ba47b389cac47a64 441 Pfam PF00033 Cytochrome b/b6/petB 24 210 1.1E-52 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 NIDE_RS17730 65d1d22fb335e829ba47b389cac47a64 441 Gene3D G3DSA:1.20.810.10 7 341 1.7E-100 T 23-04-2016 IPR027387 Cytochrome b/b6-like domain NIDE_RS17730 65d1d22fb335e829ba47b389cac47a64 441 SUPERFAMILY SSF46626 354 438 9.18E-22 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17730 65d1d22fb335e829ba47b389cac47a64 441 SUPERFAMILY SSF81342 7 264 1.29E-72 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 NIDE_RS17730 65d1d22fb335e829ba47b389cac47a64 441 Gene3D G3DSA:1.10.760.10 342 438 6.5E-21 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17730 65d1d22fb335e829ba47b389cac47a64 441 PANTHER PTHR19271 2 341 3.8E-101 T 23-04-2016 NIDE_RS17730 65d1d22fb335e829ba47b389cac47a64 441 SUPERFAMILY SSF81648 264 344 7.63E-13 T 23-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 NIDE_RS17730 65d1d22fb335e829ba47b389cac47a64 441 Pfam PF00034 Cytochrome c 359 438 4.2E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS00240 994a5dcec71b0809b7442714cc4de903 127 SUPERFAMILY SSF55298 2 126 7.38E-34 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like NIDE_RS00240 994a5dcec71b0809b7442714cc4de903 127 PANTHER PTHR11803:SF7 3 126 1.9E-47 T 23-04-2016 NIDE_RS00240 994a5dcec71b0809b7442714cc4de903 127 Pfam PF01042 Endoribonuclease L-PSP 15 125 1.2E-27 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family NIDE_RS00240 994a5dcec71b0809b7442714cc4de903 127 Gene3D G3DSA:3.30.1330.40 1 126 4.7E-43 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like NIDE_RS00240 994a5dcec71b0809b7442714cc4de903 127 PANTHER PTHR11803 3 126 1.9E-47 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family NIDE_RS05100 ab5e3ccfa04637e9200d502cf36a1583 259 Gene3D G3DSA:3.20.20.70 2 250 5.9E-98 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS05100 ab5e3ccfa04637e9200d502cf36a1583 259 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 251 39.065 T 23-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 NIDE_RS05100 ab5e3ccfa04637e9200d502cf36a1583 259 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 2.4E-58 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 NIDE_RS05100 ab5e3ccfa04637e9200d502cf36a1583 259 ProSitePatterns PS00171 Triosephosphate isomerase active site. 166 176 - T 23-04-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 NIDE_RS05100 ab5e3ccfa04637e9200d502cf36a1583 259 SUPERFAMILY SSF51351 2 250 6.94E-86 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 NIDE_RS05100 ab5e3ccfa04637e9200d502cf36a1583 259 Pfam PF00121 Triosephosphate isomerase 5 247 1.2E-87 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 NIDE_RS05100 ab5e3ccfa04637e9200d502cf36a1583 259 PANTHER PTHR21139 2 255 9.6E-106 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 NIDE_RS05650 83d6977ab2ecd79372c02f789d7354f4 345 Gene3D G3DSA:3.30.1330.10 17 166 3.0E-64 T 23-04-2016 IPR016188 PurM-like, N-terminal domain NIDE_RS05650 83d6977ab2ecd79372c02f789d7354f4 345 Gene3D G3DSA:3.90.650.10 168 340 1.6E-66 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS05650 83d6977ab2ecd79372c02f789d7354f4 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 173 338 4.5E-34 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS05650 83d6977ab2ecd79372c02f789d7354f4 345 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 3 332 4.2E-137 T 23-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS05650 83d6977ab2ecd79372c02f789d7354f4 345 SUPERFAMILY SSF56042 167 335 2.84E-55 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS05650 83d6977ab2ecd79372c02f789d7354f4 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 70 160 3.1E-18 T 23-04-2016 IPR016188 PurM-like, N-terminal domain NIDE_RS05650 83d6977ab2ecd79372c02f789d7354f4 345 PANTHER PTHR10520 1 332 9.8E-204 T 23-04-2016 NIDE_RS05650 83d6977ab2ecd79372c02f789d7354f4 345 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 2 343 47.141 T 23-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS05650 83d6977ab2ecd79372c02f789d7354f4 345 SUPERFAMILY SSF55326 2 166 9.72E-54 T 23-04-2016 NIDE_RS17050 a7ea96da3d8ceed44b97c673e7011543 273 Pfam PF02540 NAD synthase 22 82 6.0E-5 T 23-04-2016 IPR022310 NAD/GMP synthase NIDE_RS17050 a7ea96da3d8ceed44b97c673e7011543 273 SUPERFAMILY SSF52402 20 215 8.38E-33 T 23-04-2016 NIDE_RS17050 a7ea96da3d8ceed44b97c673e7011543 273 PANTHER PTHR11807:SF17 16 265 1.1E-59 T 23-04-2016 NIDE_RS17050 a7ea96da3d8ceed44b97c673e7011543 273 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 10 265 3.2E-79 T 23-04-2016 IPR005232 Conserved hypothetical protein CHP00268 NIDE_RS17050 a7ea96da3d8ceed44b97c673e7011543 273 PIRSF PIRSF006661 4 271 3.9E-94 T 23-04-2016 IPR005232 Conserved hypothetical protein CHP00268 NIDE_RS17050 a7ea96da3d8ceed44b97c673e7011543 273 PANTHER PTHR11807 16 265 1.1E-59 T 23-04-2016 NIDE_RS17050 a7ea96da3d8ceed44b97c673e7011543 273 Gene3D G3DSA:3.40.50.620 19 175 1.1E-28 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17005 4cf55c074b068d6dc2a2d5df73f863e4 452 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 13 443 3.7E-137 T 23-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 NIDE_RS17005 4cf55c074b068d6dc2a2d5df73f863e4 452 PANTHER PTHR30008 4 447 1.2E-152 T 23-04-2016 NIDE_RS17005 4cf55c074b068d6dc2a2d5df73f863e4 452 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 9 444 28.611 T 23-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 NIDE_RS17005 4cf55c074b068d6dc2a2d5df73f863e4 452 Pfam PF13742 OB-fold nucleic acid binding domain 12 104 3.0E-30 T 23-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 NIDE_RS17005 4cf55c074b068d6dc2a2d5df73f863e4 452 PANTHER PTHR30008:SF0 4 447 1.2E-152 T 23-04-2016 NIDE_RS17005 4cf55c074b068d6dc2a2d5df73f863e4 452 Pfam PF02601 Exonuclease VII, large subunit 128 439 4.4E-90 T 23-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 NIDE_RS08970 d879c1d101fb0eec3c7ebad713630be9 555 Pfam PF04575 Protein of unknown function (DUF560) 397 548 1.3E-6 T 23-04-2016 IPR007655 Protein of unknown function DUF560 NIDE_RS08970 d879c1d101fb0eec3c7ebad713630be9 555 Gene3D G3DSA:1.25.40.10 42 207 6.1E-29 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08970 d879c1d101fb0eec3c7ebad713630be9 555 SUPERFAMILY SSF48452 43 207 6.17E-29 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08970 d879c1d101fb0eec3c7ebad713630be9 555 Pfam PF13432 Tetratricopeptide repeat 117 173 4.3E-7 T 23-04-2016 NIDE_RS08970 d879c1d101fb0eec3c7ebad713630be9 555 Pfam PF13432 Tetratricopeptide repeat 50 111 2.1E-8 T 23-04-2016 NIDE_RS08970 d879c1d101fb0eec3c7ebad713630be9 555 PANTHER PTHR23083 39 232 5.5E-23 T 23-04-2016 NIDE_RS08970 d879c1d101fb0eec3c7ebad713630be9 555 SMART SM00028 79 112 0.34 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08970 d879c1d101fb0eec3c7ebad713630be9 555 SMART SM00028 113 146 0.0024 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08970 d879c1d101fb0eec3c7ebad713630be9 555 SMART SM00028 45 78 0.7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 PANTHER PTHR19959:SF135 33 361 4.6E-74 T 23-04-2016 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 Pfam PF13374 Tetratricopeptide repeat 244 281 2.3E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 SUPERFAMILY SSF48452 239 358 9.66E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 PANTHER PTHR19959 33 361 4.6E-74 T 23-04-2016 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 SMART SM00028 203 236 9.7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 SMART SM00028 245 278 3.1 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 SMART SM00028 161 194 1.6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 SMART SM00028 119 152 0.0036 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 SMART SM00028 77 110 0.016 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 SMART SM00028 287 320 170.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 SMART SM00028 36 69 220.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 SUPERFAMILY SSF48452 32 151 2.43E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 Gene3D G3DSA:1.25.40.10 32 348 7.6E-38 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 Pfam PF13424 Tetratricopeptide repeat 76 148 3.5E-18 T 23-04-2016 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 Pfam PF13424 Tetratricopeptide repeat 159 234 2.5E-15 T 23-04-2016 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 SUPERFAMILY SSF48452 155 276 8.22E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 PRINTS PR00381 Kinesin light chain signature 194 215 2.8E-8 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 PRINTS PR00381 Kinesin light chain signature 51 69 2.8E-8 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 PRINTS PR00381 Kinesin light chain signature 159 179 2.8E-8 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS03095 61bc35e3efa090ee17dc3fa26d6d3d21 384 PRINTS PR00381 Kinesin light chain signature 115 132 2.8E-8 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 Gene3D G3DSA:1.20.1250.20 226 408 1.0E-15 T 23-04-2016 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 Gene3D G3DSA:1.20.1250.20 17 203 1.8E-40 T 23-04-2016 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 SUPERFAMILY SSF103473 14 408 2.88E-65 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 Pfam PF07690 Major Facilitator Superfamily 23 367 2.6E-46 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 PRINTS PR01035 Tetracycline resistance protein signature 351 374 1.5E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 PRINTS PR01035 Tetracycline resistance protein signature 147 169 1.5E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 PRINTS PR01035 Tetracycline resistance protein signature 291 312 1.5E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 PRINTS PR01035 Tetracycline resistance protein signature 117 138 1.5E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 PRINTS PR01035 Tetracycline resistance protein signature 175 195 1.5E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 PRINTS PR01035 Tetracycline resistance protein signature 263 283 1.5E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 PRINTS PR01035 Tetracycline resistance protein signature 90 114 1.5E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 PRINTS PR01035 Tetracycline resistance protein signature 28 44 1.5E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 PANTHER PTHR23504 3 407 1.4E-153 T 23-04-2016 NIDE_RS16735 c7d269656643e34d6bdecb51af86e278 412 PANTHER PTHR23504:SF18 3 407 1.4E-153 T 23-04-2016 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 SUPERFAMILY SSF52172 5 131 5.12E-31 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 SMART SM00421 148 205 1.8E-22 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 PANTHER PTHR26402 4 210 1.5E-60 T 23-04-2016 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 5.4E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 5.4E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 5.4E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 Gene3D G3DSA:3.40.50.2300 4 156 1.1E-35 T 23-04-2016 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 Gene3D G3DSA:1.10.10.10 157 210 1.1E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 SMART SM00448 4 115 7.3E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 SUPERFAMILY SSF46894 145 211 5.78E-20 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 Pfam PF00072 Response regulator receiver domain 6 115 5.6E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 PANTHER PTHR26402:SF458 4 210 1.5E-60 T 23-04-2016 NIDE_RS05375 d4bef5ae31c3c70933db3efac04ad9fd 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 205 2.8E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS08300 c84c5722dabb7d271a858ce01503ec5d 574 Gene3D G3DSA:1.20.1560.10 6 320 9.7E-86 T 23-04-2016 NIDE_RS08300 c84c5722dabb7d271a858ce01503ec5d 574 PANTHER PTHR24221 2 572 9.6E-235 T 23-04-2016 NIDE_RS08300 c84c5722dabb7d271a858ce01503ec5d 574 Pfam PF00664 ABC transporter transmembrane region 20 288 1.4E-56 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS08300 c84c5722dabb7d271a858ce01503ec5d 574 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS08300 c84c5722dabb7d271a858ce01503ec5d 574 Gene3D G3DSA:3.40.50.300 335 564 6.0E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08300 c84c5722dabb7d271a858ce01503ec5d 574 SMART SM00382 361 547 2.1E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS08300 c84c5722dabb7d271a858ce01503ec5d 574 Pfam PF00005 ABC transporter 352 501 3.5E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS08300 c84c5722dabb7d271a858ce01503ec5d 574 SUPERFAMILY SSF90123 6 321 1.83E-85 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS08300 c84c5722dabb7d271a858ce01503ec5d 574 SUPERFAMILY SSF52540 328 572 1.85E-90 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03930 e2d92b47027618617e433d57ae45c12a 205 Pfam PF01865 Protein of unknown function DUF47 6 201 3.3E-29 T 23-04-2016 IPR018445 Putative phosphate transport regulator NIDE_RS03930 e2d92b47027618617e433d57ae45c12a 205 PANTHER PTHR37298 1 205 1.3E-65 T 23-04-2016 NIDE_RS08185 f66f3e09c1007b6c4ece20b6fcfdfe9c 260 Gene3D G3DSA:3.40.50.150 125 220 7.3E-12 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS08185 f66f3e09c1007b6c4ece20b6fcfdfe9c 260 Pfam PF08241 Methyltransferase domain 124 173 1.4E-7 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS08185 f66f3e09c1007b6c4ece20b6fcfdfe9c 260 SUPERFAMILY SSF53335 121 212 5.36E-14 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS07060 2d94e6d07d2af873305a33502b90da46 244 SMART SM00240 29 79 1.7E-11 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 NIDE_RS07060 2d94e6d07d2af873305a33502b90da46 244 PANTHER PTHR23308 23 93 1.6E-12 T 23-04-2016 NIDE_RS07060 2d94e6d07d2af873305a33502b90da46 244 Pfam PF00498 FHA domain 31 93 8.2E-17 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 NIDE_RS07060 2d94e6d07d2af873305a33502b90da46 244 SUPERFAMILY SSF49879 3 108 6.7E-26 T 23-04-2016 IPR008984 SMAD/FHA domain GO:0005515 NIDE_RS07060 2d94e6d07d2af873305a33502b90da46 244 Gene3D G3DSA:2.60.200.20 138 232 9.7E-12 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 NIDE_RS07060 2d94e6d07d2af873305a33502b90da46 244 Gene3D G3DSA:2.60.200.20 5 100 5.1E-28 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 NIDE_RS07060 2d94e6d07d2af873305a33502b90da46 244 SUPERFAMILY SSF49879 148 231 2.49E-12 T 23-04-2016 IPR008984 SMAD/FHA domain GO:0005515 NIDE_RS05860 30292e4c3befca5334a7e7b52d76fd89 368 SUPERFAMILY SSF140931 95 293 5.1E-32 T 23-04-2016 IPR003812 Fido domain NIDE_RS05860 30292e4c3befca5334a7e7b52d76fd89 368 PANTHER PTHR13504 3 361 4.8E-103 T 23-04-2016 NIDE_RS05860 30292e4c3befca5334a7e7b52d76fd89 368 Pfam PF02661 Fic/DOC family 112 221 1.9E-16 T 23-04-2016 IPR003812 Fido domain NIDE_RS05860 30292e4c3befca5334a7e7b52d76fd89 368 Gene3D G3DSA:1.10.10.10 299 367 2.5E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS05860 30292e4c3befca5334a7e7b52d76fd89 368 Gene3D G3DSA:1.10.3290.10 23 296 1.5E-55 T 23-04-2016 IPR003812 Fido domain NIDE_RS05860 30292e4c3befca5334a7e7b52d76fd89 368 Pfam PF13776 Domain of unknown function (DUF4172) 3 83 2.0E-30 T 23-04-2016 IPR025230 Domain of unknown function DUF4172 NIDE_RS05860 30292e4c3befca5334a7e7b52d76fd89 368 PANTHER PTHR13504:SF33 3 361 4.8E-103 T 23-04-2016 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 SMART SM00448 3 113 3.9E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 Gene3D G3DSA:1.10.8.60 315 392 3.0E-23 T 23-04-2016 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 SUPERFAMILY SSF52172 3 186 4.7E-46 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 166 179 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 435 455 1.14E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 418 435 1.14E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 Gene3D G3DSA:3.40.50.300 139 314 1.2E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 Gene3D G3DSA:3.40.50.2300 3 133 1.8E-37 T 23-04-2016 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 SMART SM00382 162 305 2.1E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 SUPERFAMILY SSF52540 141 387 7.99E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 Pfam PF00158 Sigma-54 interaction domain 142 308 2.8E-73 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 Pfam PF02954 Bacterial regulatory protein, Fis family 414 450 6.5E-12 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 Pfam PF00072 Response regulator receiver domain 5 112 3.6E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 SUPERFAMILY SSF46689 355 454 5.82E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 PANTHER PTHR32071 1 465 6.8E-199 T 23-04-2016 NIDE_RS07305 7363c5d559ff103934a08355cf2187d5 470 Gene3D G3DSA:1.10.10.60 405 454 2.2E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS03040 4a32cc4335aaf09086cac1f6247f9f0c 713 PANTHER PTHR32552:SF10 18 713 6.9E-189 T 23-04-2016 NIDE_RS03040 4a32cc4335aaf09086cac1f6247f9f0c 713 SUPERFAMILY SSF56935 57 713 7.14E-137 T 23-04-2016 NIDE_RS03040 4a32cc4335aaf09086cac1f6247f9f0c 713 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 163 7.5E-18 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS03040 4a32cc4335aaf09086cac1f6247f9f0c 713 Gene3D G3DSA:2.170.130.10 45 171 2.7E-36 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS03040 4a32cc4335aaf09086cac1f6247f9f0c 713 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 67 713 4.4E-123 T 23-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 NIDE_RS03040 4a32cc4335aaf09086cac1f6247f9f0c 713 Pfam PF00593 TonB dependent receptor 468 710 2.8E-36 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS03040 4a32cc4335aaf09086cac1f6247f9f0c 713 PANTHER PTHR32552 18 713 6.9E-189 T 23-04-2016 NIDE_RS03040 4a32cc4335aaf09086cac1f6247f9f0c 713 Gene3D G3DSA:2.40.170.20 178 713 1.8E-151 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS08665 3d54cdaf89d62a303afc47a58950b0e1 508 Gene3D G3DSA:3.40.50.2000 20 274 1.0E-68 T 23-04-2016 NIDE_RS08665 3d54cdaf89d62a303afc47a58950b0e1 508 Pfam PF00982 Glycosyltransferase family 20 21 495 1.7E-123 T 23-04-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 NIDE_RS08665 3d54cdaf89d62a303afc47a58950b0e1 508 PANTHER PTHR10788 1 495 2.7E-146 T 23-04-2016 NIDE_RS08665 3d54cdaf89d62a303afc47a58950b0e1 508 SUPERFAMILY SSF53756 20 494 1.76E-127 T 23-04-2016 NIDE_RS08665 3d54cdaf89d62a303afc47a58950b0e1 508 PANTHER PTHR10788:SF6 1 495 2.7E-146 T 23-04-2016 NIDE_RS08665 3d54cdaf89d62a303afc47a58950b0e1 508 Gene3D G3DSA:3.40.50.2000 275 481 1.4E-65 T 23-04-2016 NIDE_RS17560 5a00ddc74974607858732b0b9f125037 324 Gene3D G3DSA:3.40.50.970 2 321 9.7E-129 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS17560 5a00ddc74974607858732b0b9f125037 324 PANTHER PTHR11516 1 320 4.1E-142 T 23-04-2016 NIDE_RS17560 5a00ddc74974607858732b0b9f125037 324 Pfam PF00676 Dehydrogenase E1 component 16 311 6.4E-86 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 NIDE_RS17560 5a00ddc74974607858732b0b9f125037 324 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 8 321 1.4E-136 T 23-04-2016 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 NIDE_RS17560 5a00ddc74974607858732b0b9f125037 324 SUPERFAMILY SSF52518 3 322 5.9E-98 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS07565 d886e8e2e82ee54c5ca0369426830120 209 Pfam PF13036 Peptidoglycan-synthase activator LpoB 19 198 5.7E-48 T 23-04-2016 IPR014094 Penicillin-binding protein activator LpoB NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 Pfam PF01433 Peptidase family M1 2 370 9.7E-117 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 PANTHER PTHR11533:SF190 1 838 1.3E-264 T 23-04-2016 NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 Pfam PF11838 ERAP1-like C-terminal domain 507 816 1.7E-61 T 23-04-2016 IPR024571 ERAP1-like C-terminal domain NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 SUPERFAMILY SSF63737 2 182 3.79E-49 T 23-04-2016 NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 279 294 1.4E-26 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 243 253 1.4E-26 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 165 180 1.4E-26 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 118 133 1.4E-26 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 298 310 1.4E-26 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 Gene3D G3DSA:1.10.390.10 292 437 2.6E-49 T 23-04-2016 NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 PANTHER PTHR11533 1 838 1.3E-264 T 23-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 NIDE_RS01615 0fd0effe445c062bb181b4980a63ada3 838 SUPERFAMILY SSF55486 193 436 1.9E-77 T 23-04-2016 NIDE_RS19655 5f00a1e47440b5462d1f82ab3194b98f 192 PANTHER PTHR30390:SF6 1 185 1.3E-78 T 23-04-2016 NIDE_RS19655 5f00a1e47440b5462d1f82ab3194b98f 192 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 187 34.958 T 23-04-2016 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478|UniPathway: UPA00041 NIDE_RS19655 5f00a1e47440b5462d1f82ab3194b98f 192 Pfam PF13580 SIS domain 10 144 3.7E-28 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 NIDE_RS19655 5f00a1e47440b5462d1f82ab3194b98f 192 SUPERFAMILY SSF53697 1 184 4.65E-50 T 23-04-2016 NIDE_RS19655 5f00a1e47440b5462d1f82ab3194b98f 192 PANTHER PTHR30390 1 185 1.3E-78 T 23-04-2016 NIDE_RS19655 5f00a1e47440b5462d1f82ab3194b98f 192 Gene3D G3DSA:3.40.50.10490 1 186 4.0E-58 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 SUPERFAMILY SSF46626 198 224 8.8E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 PANTHER PTHR30600 273 335 2.6E-30 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 PANTHER PTHR30600 181 216 2.6E-30 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 PANTHER PTHR30600 547 632 2.6E-30 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 PANTHER PTHR30600 370 466 2.6E-30 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 PANTHER PTHR30600 91 119 2.6E-30 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 SUPERFAMILY SSF46626 288 316 8.8E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 SUPERFAMILY SSF46626 553 623 1.88E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 Gene3D G3DSA:1.10.760.10 554 638 3.8E-37 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 Gene3D G3DSA:1.10.760.10 400 447 3.8E-37 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 Gene3D G3DSA:1.10.760.10 481 509 3.8E-37 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 SUPERFAMILY SSF46626 89 130 8.8E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 SUPERFAMILY SSF46626 389 458 1.88E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 Gene3D G3DSA:1.10.760.10 198 224 8.1E-31 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 Gene3D G3DSA:1.10.760.10 288 399 8.1E-31 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 Gene3D G3DSA:1.10.760.10 88 130 8.1E-31 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 PANTHER PTHR30600:SF7 273 335 2.6E-30 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 PANTHER PTHR30600:SF7 181 216 2.6E-30 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 PANTHER PTHR30600:SF7 547 632 2.6E-30 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 PANTHER PTHR30600:SF7 370 466 2.6E-30 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 PANTHER PTHR30600:SF7 91 119 2.6E-30 T 23-04-2016 NIDE_RS16075 4f6e2ef07321d98b7005bd041a14b60a 691 Pfam PF03150 Di-haem cytochrome c peroxidase 90 408 4.9E-24 T 23-04-2016 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 NIDE_RS00720 02ca473eaf6d7ee69192b95262446684 224 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 9 222 4.5E-38 T 23-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 NIDE_RS00720 02ca473eaf6d7ee69192b95262446684 224 PANTHER PTHR23344 7 223 1.6E-64 T 23-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 NIDE_RS00720 02ca473eaf6d7ee69192b95262446684 224 SUPERFAMILY SSF51695 5 223 2.49E-64 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 NIDE_RS00720 02ca473eaf6d7ee69192b95262446684 224 Gene3D G3DSA:3.20.20.190 5 224 6.1E-65 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 109 3.5E-41 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 Pfam PF02785 Biotin carboxylase C-terminal domain 335 441 2.1E-38 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 Gene3D G3DSA:3.30.1490.20 128 201 6.9E-30 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 321 1.6E-78 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 SUPERFAMILY SSF51246 330 447 2.15E-43 T 23-04-2016 IPR011054 Rudiment single hybrid motif NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 Gene3D G3DSA:3.30.470.20 202 447 7.1E-99 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 SUPERFAMILY SSF52440 1 112 2.52E-44 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 443 4.7E-193 T 23-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 Gene3D G3DSA:3.40.50.20 1 127 8.6E-51 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 SUPERFAMILY SSF56059 82 347 1.64E-71 T 23-04-2016 NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 SMART SM00878 335 441 1.3E-59 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal NIDE_RS05565 7ee458eaf7e8619fea70dead98451783 472 PANTHER PTHR18866 1 470 8.4E-290 T 23-04-2016 NIDE_RS01690 c3b357cbdbca191ab394c5289b2922bd 360 Pfam PF03054 tRNA methyl transferase 5 357 7.3E-106 T 23-04-2016 NIDE_RS01690 c3b357cbdbca191ab394c5289b2922bd 360 PANTHER PTHR11933:SF10 1 359 9.9E-133 T 23-04-2016 NIDE_RS01690 c3b357cbdbca191ab394c5289b2922bd 360 PANTHER PTHR11933 1 359 9.9E-133 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 NIDE_RS01690 c3b357cbdbca191ab394c5289b2922bd 360 Gene3D G3DSA:2.40.30.10 280 359 1.8E-21 T 23-04-2016 NIDE_RS01690 c3b357cbdbca191ab394c5289b2922bd 360 SUPERFAMILY SSF52402 4 249 1.44E-45 T 23-04-2016 NIDE_RS01690 c3b357cbdbca191ab394c5289b2922bd 360 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 4 358 36.317 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 NIDE_RS01690 c3b357cbdbca191ab394c5289b2922bd 360 Gene3D G3DSA:2.30.30.280 221 272 1.8E-12 T 23-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 NIDE_RS01690 c3b357cbdbca191ab394c5289b2922bd 360 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 4 357 5.0E-98 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 NIDE_RS01690 c3b357cbdbca191ab394c5289b2922bd 360 Gene3D G3DSA:3.40.50.620 3 215 9.3E-74 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS00080 448861ee53010fe7db317f904956463e 148 SUPERFAMILY SSF54593 1 136 2.15E-34 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS00080 448861ee53010fe7db317f904956463e 148 ProSitePatterns PS00934 Glyoxalase I signature 1. 8 29 - T 23-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 NIDE_RS00080 448861ee53010fe7db317f904956463e 148 PANTHER PTHR10374:SF14 5 139 1.2E-22 T 23-04-2016 NIDE_RS00080 448861ee53010fe7db317f904956463e 148 PANTHER PTHR10374 5 139 1.2E-22 T 23-04-2016 NIDE_RS00080 448861ee53010fe7db317f904956463e 148 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 123 3.9E-17 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIDE_RS00080 448861ee53010fe7db317f904956463e 148 Gene3D G3DSA:3.10.180.10 1 136 2.1E-31 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS03180 b885d67a1f8a8e28e022830569669c19 681 SUPERFAMILY SSF56935 22 681 2.23E-82 T 23-04-2016 NIDE_RS03180 b885d67a1f8a8e28e022830569669c19 681 Pfam PF00593 TonB dependent receptor 439 679 5.5E-15 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS03180 b885d67a1f8a8e28e022830569669c19 681 Gene3D G3DSA:2.40.170.20 159 681 1.4E-53 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS03180 b885d67a1f8a8e28e022830569669c19 681 Pfam PF07715 TonB-dependent Receptor Plug Domain 47 156 2.0E-14 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS03180 b885d67a1f8a8e28e022830569669c19 681 Gene3D G3DSA:2.170.130.10 57 158 2.3E-16 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS03180 b885d67a1f8a8e28e022830569669c19 681 PANTHER PTHR32552:SF36 60 681 1.1E-88 T 23-04-2016 NIDE_RS03180 b885d67a1f8a8e28e022830569669c19 681 PANTHER PTHR32552 60 681 1.1E-88 T 23-04-2016 NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 SUPERFAMILY SSF49503 1493 1590 3.27E-5 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 SUPERFAMILY SSF49503 1089 1203 2.83E-9 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 ProSitePatterns PS00080 Multicopper oxidases signature 2. 521 532 - T 23-04-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 Pfam PF07732 Multicopper oxidase 203 309 5.8E-6 T 23-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 SUPERFAMILY SSF49503 1283 1392 1.9E-6 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 Gene3D G3DSA:2.60.40.420 142 312 7.5E-16 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 Gene3D G3DSA:2.60.40.420 1289 1398 7.0E-13 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 Gene3D G3DSA:2.60.40.420 920 984 1.7E-4 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 Gene3D G3DSA:2.60.40.420 739 833 1.7E-4 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 Gene3D G3DSA:2.60.40.420 1087 1202 4.2E-6 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 SUPERFAMILY SSF49503 385 539 7.52E-11 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 SUPERFAMILY SSF49503 211 311 3.44E-10 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15135 748757c91acc91547069d92b6a39e149 1621 Gene3D G3DSA:2.60.40.420 405 540 7.7E-9 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS10475 5474e8e28ed8008c8b5f3f5d69d0fc39 435 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 342 351 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS10475 5474e8e28ed8008c8b5f3f5d69d0fc39 435 PANTHER PTHR15184 2 430 3.0E-210 T 23-04-2016 NIDE_RS10475 5474e8e28ed8008c8b5f3f5d69d0fc39 435 Gene3D G3DSA:3.40.50.300 88 353 1.0E-93 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10475 5474e8e28ed8008c8b5f3f5d69d0fc39 435 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 141 351 6.9E-75 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS10475 5474e8e28ed8008c8b5f3f5d69d0fc39 435 SUPERFAMILY SSF52540 88 356 1.13E-96 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10475 5474e8e28ed8008c8b5f3f5d69d0fc39 435 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 19 82 1.1E-7 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS10475 5474e8e28ed8008c8b5f3f5d69d0fc39 435 PANTHER PTHR15184:SF9 2 430 3.0E-210 T 23-04-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS10475 5474e8e28ed8008c8b5f3f5d69d0fc39 435 SMART SM00382 153 335 4.4E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10475 5474e8e28ed8008c8b5f3f5d69d0fc39 435 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 5 430 7.2E-175 T 23-04-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS06155 0dc3db6a070959fa70cd6dbf484c3eeb 69 SUPERFAMILY SSF55129 14 67 1.83E-15 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain NIDE_RS06155 0dc3db6a070959fa70cd6dbf484c3eeb 69 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 10 68 16.451 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 NIDE_RS06155 0dc3db6a070959fa70cd6dbf484c3eeb 69 PANTHER PTHR15892:SF2 14 66 4.1E-16 T 23-04-2016 NIDE_RS06155 0dc3db6a070959fa70cd6dbf484c3eeb 69 PIRSF PIRSF002211 5 69 3.4E-20 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 NIDE_RS06155 0dc3db6a070959fa70cd6dbf484c3eeb 69 Pfam PF00327 Ribosomal protein L30p/L7e 14 63 4.7E-15 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain NIDE_RS06155 0dc3db6a070959fa70cd6dbf484c3eeb 69 Gene3D G3DSA:3.30.1390.20 12 67 1.6E-20 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain NIDE_RS06155 0dc3db6a070959fa70cd6dbf484c3eeb 69 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 14 67 5.7E-19 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 NIDE_RS06155 0dc3db6a070959fa70cd6dbf484c3eeb 69 PANTHER PTHR15892 14 66 4.1E-16 T 23-04-2016 NIDE_RS11690 70b2587208ec71f6f219102980d978d0 382 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 297 9.3E-52 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS11690 70b2587208ec71f6f219102980d978d0 382 PANTHER PTHR30097 59 369 2.8E-68 T 23-04-2016 NIDE_RS11690 70b2587208ec71f6f219102980d978d0 382 Gene3D G3DSA:2.40.50.100 75 105 2.5E-14 T 23-04-2016 NIDE_RS11690 70b2587208ec71f6f219102980d978d0 382 Gene3D G3DSA:2.40.50.100 189 222 2.5E-14 T 23-04-2016 NIDE_RS11690 70b2587208ec71f6f219102980d978d0 382 PANTHER PTHR30097:SF4 59 369 2.8E-68 T 23-04-2016 NIDE_RS11690 70b2587208ec71f6f219102980d978d0 382 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 74 365 4.7E-49 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS11690 70b2587208ec71f6f219102980d978d0 382 SUPERFAMILY SSF111369 75 301 7.19E-22 T 23-04-2016 NIDE_RS15700 c9616399b91183603a8c1fa3c5dd6441 449 Gene3D G3DSA:3.40.50.300 2 250 4.8E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15700 c9616399b91183603a8c1fa3c5dd6441 449 Pfam PF00005 ABC transporter 53 184 7.8E-21 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS15700 c9616399b91183603a8c1fa3c5dd6441 449 PANTHER PTHR24220:SF117 38 248 4.2E-92 T 23-04-2016 NIDE_RS15700 c9616399b91183603a8c1fa3c5dd6441 449 SUPERFAMILY SSF52540 45 247 1.47E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15700 c9616399b91183603a8c1fa3c5dd6441 449 SMART SM00382 61 232 4.4E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS15700 c9616399b91183603a8c1fa3c5dd6441 449 Pfam PF14524 Wzt C-terminal domain 286 421 2.0E-25 T 23-04-2016 IPR029439 Wzt, C-terminal NIDE_RS15700 c9616399b91183603a8c1fa3c5dd6441 449 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS15700 c9616399b91183603a8c1fa3c5dd6441 449 Gene3D G3DSA:2.70.50.60 286 421 3.5E-27 T 23-04-2016 NIDE_RS15700 c9616399b91183603a8c1fa3c5dd6441 449 PANTHER PTHR24220 38 248 4.2E-92 T 23-04-2016 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 Pfam PF13180 PDZ domain 261 341 5.0E-13 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 SUPERFAMILY SSF50494 70 257 2.38E-30 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 Pfam PF13365 Trypsin-like peptidase domain 72 215 8.7E-24 T 23-04-2016 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 Gene3D G3DSA:2.40.10.10 156 262 3.1E-21 T 23-04-2016 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 SUPERFAMILY SSF50156 261 341 4.47E-10 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 PANTHER PTHR22939 39 342 2.4E-29 T 23-04-2016 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 Gene3D G3DSA:2.30.42.10 263 342 1.7E-13 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 SMART SM00228 259 332 4.1E-6 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 Gene3D G3DSA:2.40.10.10 71 155 3.9E-8 T 23-04-2016 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 PANTHER PTHR22939:SF79 39 342 2.4E-29 T 23-04-2016 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 PRINTS PR00834 HtrA/DegQ protease family signature 186 203 2.3E-15 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 PRINTS PR00834 HtrA/DegQ protease family signature 208 225 2.3E-15 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 PRINTS PR00834 HtrA/DegQ protease family signature 289 301 2.3E-15 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 PRINTS PR00834 HtrA/DegQ protease family signature 80 92 2.3E-15 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS06630 d4a27c399b2c28159c5f373f308c2498 344 PRINTS PR00834 HtrA/DegQ protease family signature 153 177 2.3E-15 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS14080 89d2169b1a24fff29e100fcbc0bb1d5c 175 SUPERFAMILY SSF50447 8 96 2.65E-14 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS14080 89d2169b1a24fff29e100fcbc0bb1d5c 175 Pfam PF01782 RimM N-terminal domain 12 92 7.5E-15 T 23-04-2016 IPR002676 RimM protein GO:0006364 NIDE_RS14080 89d2169b1a24fff29e100fcbc0bb1d5c 175 SUPERFAMILY SSF50346 103 172 4.19E-15 T 23-04-2016 IPR011033 PRC-barrel-like NIDE_RS14080 89d2169b1a24fff29e100fcbc0bb1d5c 175 Gene3D G3DSA:2.40.30.60 5 97 8.6E-15 T 23-04-2016 IPR002676 RimM protein GO:0006364 NIDE_RS14080 89d2169b1a24fff29e100fcbc0bb1d5c 175 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 9 172 19.869 T 23-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 NIDE_RS14080 89d2169b1a24fff29e100fcbc0bb1d5c 175 Gene3D G3DSA:2.30.30.240 103 172 1.1E-15 T 23-04-2016 NIDE_RS14080 89d2169b1a24fff29e100fcbc0bb1d5c 175 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 10 172 2.1E-33 T 23-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 NIDE_RS14080 89d2169b1a24fff29e100fcbc0bb1d5c 175 PANTHER PTHR33692 6 171 2.5E-35 T 23-04-2016 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 SUPERFAMILY SSF47384 310 390 1.84E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 SUPERFAMILY SSF55785 199 311 6.88E-16 T 23-04-2016 IPR000014 PAS domain NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 PANTHER PTHR24423 179 560 1.1E-129 T 23-04-2016 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 SUPERFAMILY SSF55874 378 547 2.62E-49 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 SMART SM00091 188 254 6.0E-5 T 23-04-2016 IPR000014 PAS domain NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 Gene3D G3DSA:1.10.287.130 317 385 9.0E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 PANTHER PTHR24423:SF382 179 560 1.1E-129 T 23-04-2016 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 184 311 3.6E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 528 3.0E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 489 3.0E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 503 3.0E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 547 3.0E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 Gene3D G3DSA:3.30.450.20 178 302 2.5E-15 T 23-04-2016 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 SMART SM00388 324 389 6.4E-26 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 436 548 2.4E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 SMART SM00387 436 550 1.3E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 Pfam PF00512 His Kinase A (phospho-acceptor) domain 324 389 2.6E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 Gene3D G3DSA:3.30.565.10 390 555 6.3E-49 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20245 8f1b3c3e18134b17ab21649f4a5f52f8 578 Pfam PF00989 PAS fold 190 240 2.1E-7 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PANTHER PTHR24322 16 142 5.5E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PANTHER PTHR24322 158 189 5.5E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 Gene3D G3DSA:3.40.50.720 14 289 1.2E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 9.6E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 9.6E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 9.6E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PANTHER PTHR24322:SF397 16 142 5.5E-49 T 23-04-2016 NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PANTHER PTHR24322:SF397 158 189 5.5E-49 T 23-04-2016 NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 8.0E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 8.0E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 8.0E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 8.0E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 8.0E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 SUPERFAMILY SSF51735 12 282 1.12E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 189 3.4E-4 T 23-04-2016 NIDE_RS16510 71901160c3d9c1cbdf5b8f346abc4d3e 294 Pfam PF00106 short chain dehydrogenase 14 202 4.6E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 PANTHER PTHR23150 312 537 2.8E-56 T 23-04-2016 NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 Pfam PF03781 Sulfatase-modifying factor enzyme 1 312 533 1.9E-52 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 SUPERFAMILY SSF56436 309 536 5.37E-66 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 Pfam PF13365 Trypsin-like peptidase domain 33 163 7.6E-27 T 23-04-2016 NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 Gene3D G3DSA:2.40.10.10 31 103 5.1E-20 T 23-04-2016 NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 Gene3D G3DSA:3.90.1580.10 309 536 3.5E-67 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 Gene3D G3DSA:2.40.10.10 104 195 2.5E-25 T 23-04-2016 NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 PRINTS PR00834 HtrA/DegQ protease family signature 63 83 3.5E-15 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 PRINTS PR00834 HtrA/DegQ protease family signature 42 54 3.5E-15 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 PRINTS PR00834 HtrA/DegQ protease family signature 156 173 3.5E-15 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 PRINTS PR00834 HtrA/DegQ protease family signature 134 151 3.5E-15 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS20330 92135660d49ff9bbab446e9fdc24cc4c 537 SUPERFAMILY SSF50494 28 194 2.79E-42 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 Gene3D G3DSA:1.10.8.60 319 388 1.0E-22 T 23-04-2016 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 SMART SM00448 4 118 3.3E-4 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 SUPERFAMILY SSF46689 359 450 5.63E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 SUPERFAMILY SSF52540 146 387 4.54E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 PANTHER PTHR32071 28 460 6.3E-162 T 23-04-2016 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 Gene3D G3DSA:3.40.50.2300 3 129 2.1E-15 T 23-04-2016 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 Pfam PF00158 Sigma-54 interaction domain 147 312 1.2E-69 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 SUPERFAMILY SSF52172 3 189 1.35E-20 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 SMART SM00382 166 309 1.7E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 Pfam PF02954 Bacterial regulatory protein, Fis family 410 447 6.6E-13 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 413 430 3.8E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 430 450 3.8E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 Gene3D G3DSA:1.10.10.60 392 450 3.2E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 Gene3D G3DSA:3.40.50.300 142 318 4.6E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14155 7db46fef252754a134d092dbf9907438 470 Pfam PF00072 Response regulator receiver domain 6 118 1.7E-11 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS17970 5500a83c5620ba1b6355f16bc16cac2d 410 Pfam PF02687 FtsX-like permease family 291 403 7.1E-22 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS17970 5500a83c5620ba1b6355f16bc16cac2d 410 PANTHER PTHR30572:SF7 7 410 4.4E-112 T 23-04-2016 NIDE_RS17970 5500a83c5620ba1b6355f16bc16cac2d 410 Pfam PF12704 MacB-like periplasmic core domain 23 249 4.5E-36 T 23-04-2016 IPR025857 MacB-like periplasmic core domain NIDE_RS17970 5500a83c5620ba1b6355f16bc16cac2d 410 PANTHER PTHR30572 7 410 4.4E-112 T 23-04-2016 NIDE_RS12100 1310191cb11e9368d660896babf84c22 323 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 227 243 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site NIDE_RS12100 1310191cb11e9368d660896babf84c22 323 Gene3D G3DSA:3.40.50.720 7 115 3.0E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12100 1310191cb11e9368d660896babf84c22 323 SUPERFAMILY SSF51735 102 288 4.17E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12100 1310191cb11e9368d660896babf84c22 323 PANTHER PTHR10996 38 320 6.7E-122 T 23-04-2016 NIDE_RS12100 1310191cb11e9368d660896babf84c22 323 SUPERFAMILY SSF52283 3 138 2.08E-31 T 23-04-2016 NIDE_RS12100 1310191cb11e9368d660896babf84c22 323 Gene3D G3DSA:3.40.50.720 116 290 3.9E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12100 1310191cb11e9368d660896babf84c22 323 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 32 318 4.6E-27 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 NIDE_RS12100 1310191cb11e9368d660896babf84c22 323 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 198 220 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site NIDE_RS12100 1310191cb11e9368d660896babf84c22 323 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 287 1.3E-59 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 522 631 2.7E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 SUPERFAMILY SSF55874 468 631 5.63E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 Gene3D G3DSA:3.30.565.10 466 633 3.6E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 Gene3D G3DSA:3.30.450.20 277 396 2.9E-22 T 23-04-2016 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 SUPERFAMILY SSF47384 399 476 6.28E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 PANTHER PTHR24423 4 12 2.3E-87 T 23-04-2016 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 PANTHER PTHR24423 282 634 2.3E-87 T 23-04-2016 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 SMART SM00387 521 632 1.3E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 282 404 3.9E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 SMART SM00388 413 479 6.8E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 SMART SM00086 356 398 1.1E-6 T 23-04-2016 IPR001610 PAC motif NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 Pfam PF05227 CHASE3 domain 54 175 4.7E-19 T 23-04-2016 IPR007891 CHASE3 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 Pfam PF00672 HAMP domain 192 259 1.4E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 Pfam PF00512 His Kinase A (phospho-acceptor) domain 414 476 1.5E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 Gene3D G3DSA:1.10.287.130 407 465 2.6E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 SUPERFAMILY SSF55785 272 396 4.54E-19 T 23-04-2016 IPR000014 PAS domain NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 580 590 4.0E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 576 4.0E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 616 629 4.0E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 592 610 4.0E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS14825 f4b15407d5d1669274f81127807de210 651 Pfam PF08447 PAS fold 316 392 1.3E-15 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS11070 3a620f58b33519e35305620e79410136 517 PANTHER PTHR30005 4 506 7.9E-113 T 23-04-2016 NIDE_RS11070 3a620f58b33519e35305620e79410136 517 PANTHER PTHR30005:SF0 4 506 7.9E-113 T 23-04-2016 NIDE_RS11070 3a620f58b33519e35305620e79410136 517 SUPERFAMILY SSF53067 130 310 1.2E-35 T 23-04-2016 NIDE_RS11070 3a620f58b33519e35305620e79410136 517 SUPERFAMILY SSF53067 4 124 5.33E-34 T 23-04-2016 NIDE_RS11070 3a620f58b33519e35305620e79410136 517 Gene3D G3DSA:3.30.420.40 1 124 2.7E-41 T 23-04-2016 NIDE_RS11070 3a620f58b33519e35305620e79410136 517 SUPERFAMILY SSF109604 321 510 2.15E-50 T 23-04-2016 NIDE_RS11070 3a620f58b33519e35305620e79410136 517 Pfam PF02541 Ppx/GppA phosphatase family 27 309 9.2E-62 T 23-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 NIDE_RS11070 3a620f58b33519e35305620e79410136 517 Gene3D G3DSA:1.10.3210.10 339 456 2.0E-12 T 23-04-2016 IPR006674 HD domain NIDE_RS11070 3a620f58b33519e35305620e79410136 517 Gene3D G3DSA:3.30.420.150 128 310 1.4E-43 T 23-04-2016 NIDE_RS11070 3a620f58b33519e35305620e79410136 517 PIRSF PIRSF001267 1 510 7.7E-115 T 23-04-2016 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40|UniPathway: UPA00908 NIDE_RS11070 3a620f58b33519e35305620e79410136 517 Pfam PF01966 HD domain 339 456 9.3E-15 T 23-04-2016 IPR006674 HD domain NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 Gene3D G3DSA:3.40.50.300 132 414 4.9E-102 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 SMART SM00357 52 118 1.3E-19 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 PANTHER PTHR15184 78 400 5.4E-191 T 23-04-2016 NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 156 360 1.6E-22 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 SUPERFAMILY SSF52540 90 368 9.02E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 SMART SM00959 5 47 6.1E-18 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 SUPERFAMILY SSF50249 49 125 1.26E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 SUPERFAMILY SSF68912 1 47 1.96E-12 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 8.0E-33 T 23-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 415 241.113 T 23-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 PANTHER PTHR15184:SF34 78 400 5.4E-191 T 23-04-2016 NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 414 2.7E-213 T 23-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 Gene3D G3DSA:1.10.720.10 1 47 2.6E-19 T 23-04-2016 NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 Gene3D G3DSA:2.40.50.140 49 117 7.4E-36 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 SMART SM00382 167 352 2.5E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS04475 667a7f363f16cba30ea6d5d8820ea3c0 415 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 2.9E-17 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 NIDE_RS02305 f3d97da38000e033970d0cfbbfc20f4f 160 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 136 7.5E-38 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 NIDE_RS02305 f3d97da38000e033970d0cfbbfc20f4f 160 PANTHER PTHR20941 1 160 3.8E-55 T 23-04-2016 NIDE_RS02305 f3d97da38000e033970d0cfbbfc20f4f 160 Gene3D G3DSA:3.30.70.560 3 157 4.6E-52 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 NIDE_RS02305 f3d97da38000e033970d0cfbbfc20f4f 160 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 136 4.0E-35 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 NIDE_RS02305 f3d97da38000e033970d0cfbbfc20f4f 160 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 91 102 - T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 NIDE_RS02305 f3d97da38000e033970d0cfbbfc20f4f 160 SUPERFAMILY SSF55083 1 158 1.01E-48 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 NIDE_RS08950 b2b636b55138bfc2265338226d2de62a 240 SUPERFAMILY SSF81606 2 239 9.02E-62 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS08950 b2b636b55138bfc2265338226d2de62a 240 PANTHER PTHR13832 2 239 2.9E-45 T 23-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 NIDE_RS08950 b2b636b55138bfc2265338226d2de62a 240 Pfam PF13672 Protein phosphatase 2C 3 201 2.8E-16 T 23-04-2016 NIDE_RS08950 b2b636b55138bfc2265338226d2de62a 240 SMART SM00332 1 237 6.2E-23 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS08950 b2b636b55138bfc2265338226d2de62a 240 SMART SM00331 1 239 5.9E-31 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS08950 b2b636b55138bfc2265338226d2de62a 240 PANTHER PTHR13832:SF278 2 239 2.9E-45 T 23-04-2016 NIDE_RS08950 b2b636b55138bfc2265338226d2de62a 240 Gene3D G3DSA:3.60.40.10 2 239 4.0E-66 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS10800 15aae2c05eb1a0c5b41bd829800e9f42 172 SMART SM00260 29 166 4.3E-42 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10800 15aae2c05eb1a0c5b41bd829800e9f42 172 Gene3D G3DSA:2.40.50.180 72 106 2.1E-15 T 23-04-2016 NIDE_RS10800 15aae2c05eb1a0c5b41bd829800e9f42 172 Gene3D G3DSA:2.30.30.40 107 159 4.6E-11 T 23-04-2016 NIDE_RS10800 15aae2c05eb1a0c5b41bd829800e9f42 172 SUPERFAMILY SSF50341 28 166 5.62E-41 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10800 15aae2c05eb1a0c5b41bd829800e9f42 172 PANTHER PTHR22617:SF33 12 170 6.9E-53 T 23-04-2016 NIDE_RS10800 15aae2c05eb1a0c5b41bd829800e9f42 172 PANTHER PTHR22617 12 170 6.9E-53 T 23-04-2016 NIDE_RS10800 15aae2c05eb1a0c5b41bd829800e9f42 172 Pfam PF01584 CheW-like domain 33 166 3.7E-38 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 SUPERFAMILY SSF52540 190 506 7.61E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 Gene3D G3DSA:3.30.230.10 5 166 1.5E-28 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 Gene3D G3DSA:3.40.50.300 190 391 2.2E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 343 355 6.2E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 291 305 6.2E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 210 225 6.2E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 319 332 6.2E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 5 501 2.4E-191 T 23-04-2016 IPR004482 Mg chelatase-related protein NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 139 1.1E-41 T 23-04-2016 NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 PANTHER PTHR32039:SF7 1 508 9.0E-247 T 23-04-2016 IPR004482 Mg chelatase-related protein NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 SUPERFAMILY SSF54211 4 167 7.21E-31 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 406 501 1.1E-31 T 23-04-2016 IPR025158 Mg chelatase-related protein, C-terminal domain NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 Pfam PF01078 Magnesium chelatase, subunit ChlI 191 395 9.0E-97 T 23-04-2016 IPR000523 Magnesium chelatase ChlI domain NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 PANTHER PTHR32039 1 508 9.0E-247 T 23-04-2016 NIDE_RS10345 34360b8e9e060542ba5a4cab24478204 509 SMART SM00382 211 394 5.3E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10910 ba459b5ba9f15e495c1396369ee14c9e 366 PANTHER PTHR18964 1 356 1.8E-100 T 23-04-2016 NIDE_RS10910 ba459b5ba9f15e495c1396369ee14c9e 366 SUPERFAMILY SSF53756 1 362 2.75E-111 T 23-04-2016 NIDE_RS10910 ba459b5ba9f15e495c1396369ee14c9e 366 Gene3D G3DSA:3.40.50.2000 206 360 2.8E-52 T 23-04-2016 NIDE_RS10910 ba459b5ba9f15e495c1396369ee14c9e 366 Gene3D G3DSA:3.40.50.2000 1 205 3.8E-72 T 23-04-2016 NIDE_RS10910 ba459b5ba9f15e495c1396369ee14c9e 366 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 4 360 2.6E-93 T 23-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 NIDE_RS10910 ba459b5ba9f15e495c1396369ee14c9e 366 PANTHER PTHR18964:SF70 1 356 1.8E-100 T 23-04-2016 NIDE_RS10910 ba459b5ba9f15e495c1396369ee14c9e 366 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 31 359 6.9E-103 T 23-04-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 7 250 2.6E-60 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 SMART SM00825 Beta-ketoacyl synthase 9 414 3.9E-17 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 Gene3D G3DSA:3.40.47.10 4 263 7.2E-81 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 258 371 7.2E-38 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 Gene3D G3DSA:3.40.47.10 266 414 2.7E-65 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 SUPERFAMILY SSF53901 217 414 3.06E-76 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 PIRSF PIRSF000447 4 416 6.5E-194 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 7 412 2.6E-203 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 SUPERFAMILY SSF53901 7 255 3.33E-79 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 PANTHER PTHR11712 3 413 5.9E-220 T 23-04-2016 NIDE_RS03665 a0f82703273c10ca3cd1c8636b59e8ce 416 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 158 174 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site NIDE_RS02475 e333dda3b9f8cd2fa8a63393d8699086 349 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 43 334 1.8E-103 T 23-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 NIDE_RS02475 e333dda3b9f8cd2fa8a63393d8699086 349 PANTHER PTHR30004:SF6 10 349 2.6E-138 T 23-04-2016 NIDE_RS02475 e333dda3b9f8cd2fa8a63393d8699086 349 PANTHER PTHR30004 10 349 2.6E-138 T 23-04-2016 NIDE_RS02475 e333dda3b9f8cd2fa8a63393d8699086 349 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 16 338 4.4E-112 T 23-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 NIDE_RS02475 e333dda3b9f8cd2fa8a63393d8699086 349 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 12 338 35.059 T 23-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 NIDE_RS02475 e333dda3b9f8cd2fa8a63393d8699086 349 SUPERFAMILY SSF53659 13 340 5.93E-102 T 23-04-2016 NIDE_RS02475 e333dda3b9f8cd2fa8a63393d8699086 349 Gene3D G3DSA:3.40.718.10 11 338 4.3E-121 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 NIDE_RS19780 e19072204b47a5f9790c8cf830fe2f90 274 SUPERFAMILY SSF50182 110 167 1.73E-5 T 23-04-2016 IPR010920 LSM domain NIDE_RS19780 e19072204b47a5f9790c8cf830fe2f90 274 Gene3D G3DSA:2.30.30.60 112 167 6.8E-8 T 23-04-2016 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 233 299 6.8E-16 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 SUPERFAMILY SSF160246 165 237 1.46E-7 T 23-04-2016 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 Gene3D G3DSA:1.10.287.560 232 300 2.7E-17 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 1.8E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 441 1.8E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 484 1.8E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 465 1.8E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 SMART SM00073 5 102 1.8E-25 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 Gene3D G3DSA:2.30.30.40 573 617 2.1E-21 T 23-04-2016 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 Gene3D G3DSA:2.30.30.40 487 508 2.1E-21 T 23-04-2016 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 PANTHER PTHR22617 1 620 1.5E-211 T 23-04-2016 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 Gene3D G3DSA:3.30.565.10 301 486 4.8E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 SMART SM01231 231 299 6.3E-18 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 SUPERFAMILY SSF47226 5 129 2.62E-31 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 SUPERFAMILY SSF47384 233 300 2.55E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 SUPERFAMILY SSF50341 486 617 6.93E-34 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 SMART SM00387 344 487 1.8E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 Pfam PF01584 CheW-like domain 491 619 1.4E-25 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 Pfam PF01627 Hpt domain 7 98 2.0E-15 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 SMART SM00260 479 617 1.1E-34 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 Gene3D G3DSA:2.40.50.180 511 572 4.3E-18 T 23-04-2016 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 Gene3D G3DSA:1.20.120.160 1 143 4.5E-43 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 486 9.9E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 PANTHER PTHR22617:SF6 1 620 1.5E-211 T 23-04-2016 NIDE_RS10780 a7d0917f59432ac4ce8c4f5874228af7 630 SUPERFAMILY SSF55874 301 485 1.23E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS18570 8a9818a0b35c08cd6786add9f34eee26 94 Pfam PF02416 mttA/Hcf106 family 6 48 1.6E-15 T 23-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 NIDE_RS18570 8a9818a0b35c08cd6786add9f34eee26 94 PANTHER PTHR33162 1 49 2.6E-13 T 23-04-2016 NIDE_RS18570 8a9818a0b35c08cd6786add9f34eee26 94 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 2 89 21.198 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NIDE_RS18570 8a9818a0b35c08cd6786add9f34eee26 94 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 2.5E-18 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Pfam PF00512 His Kinase A (phospho-acceptor) domain 694 755 3.0E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 805 906 7.7E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SUPERFAMILY SSF55785 553 676 2.51E-9 T 23-04-2016 IPR000014 PAS domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 271 391 2.8E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 260 5.0E-28 T 23-04-2016 IPR000014 PAS domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SMART SM00388 694 759 3.1E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SUPERFAMILY SSF55781 410 563 1.53E-14 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SMART SM00086 345 386 0.1 T 23-04-2016 IPR001610 PAC motif NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SMART SM00086 215 255 31.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SMART SM00065 408 562 0.0017 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Pfam PF00072 Response regulator receiver domain 5 114 1.2E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SUPERFAMILY SSF55785 129 252 1.28E-28 T 23-04-2016 IPR000014 PAS domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Pfam PF00989 PAS fold 139 249 3.7E-15 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Pfam PF00989 PAS fold 271 383 1.4E-13 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Pfam PF01590 GAF domain 411 545 2.3E-4 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 PANTHER PTHR24423 129 384 5.3E-100 T 23-04-2016 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 PANTHER PTHR24423 678 906 5.3E-100 T 23-04-2016 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SMART SM00448 3 114 2.0E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Gene3D G3DSA:3.30.450.20 134 252 6.9E-30 T 23-04-2016 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Gene3D G3DSA:3.30.450.20 560 625 2.6E-9 T 23-04-2016 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SUPERFAMILY SSF52172 3 154 6.69E-38 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SMART SM00091 566 632 5.9E-5 T 23-04-2016 IPR000014 PAS domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SMART SM00091 267 333 4.8E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SMART SM00091 139 205 4.2E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Gene3D G3DSA:3.30.565.10 764 906 7.5E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Gene3D G3DSA:3.30.450.40 383 559 3.4E-15 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Gene3D G3DSA:3.40.50.2300 2 133 6.1E-35 T 23-04-2016 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SUPERFAMILY SSF47384 689 756 1.96E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Pfam PF08448 PAS fold 572 680 7.4E-7 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Gene3D G3DSA:1.10.287.130 690 755 2.0E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SMART SM00387 801 909 2.8E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 PRINTS PR00344 Bacterial sensor protein C-terminal signature 869 887 6.3E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 PRINTS PR00344 Bacterial sensor protein C-terminal signature 838 852 6.3E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 PRINTS PR00344 Bacterial sensor protein C-terminal signature 893 906 6.3E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 PRINTS PR00344 Bacterial sensor protein C-terminal signature 856 866 6.3E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 Gene3D G3DSA:3.30.450.20 270 382 3.9E-21 T 23-04-2016 NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SUPERFAMILY SSF55874 763 907 2.75E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20185 6bc66c0547dd355808b63684d6918687 910 SUPERFAMILY SSF55785 252 384 9.13E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS05745 99f2abb54a5291de866222c86ea71644 116 PANTHER PTHR11780:SF12 5 107 6.3E-26 T 23-04-2016 NIDE_RS05745 99f2abb54a5291de866222c86ea71644 116 Gene3D G3DSA:3.40.30.10 4 104 3.8E-32 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS05745 99f2abb54a5291de866222c86ea71644 116 PANTHER PTHR11780 5 107 6.3E-26 T 23-04-2016 NIDE_RS05745 99f2abb54a5291de866222c86ea71644 116 SUPERFAMILY SSF52833 4 103 3.24E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS01600 3250c23c5b6244b9a55b74b4fd98476d 267 PANTHER PTHR30383 75 249 2.7E-39 T 23-04-2016 NIDE_RS01600 3250c23c5b6244b9a55b74b4fd98476d 267 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 76 86 - T 23-04-2016 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 NIDE_RS01600 3250c23c5b6244b9a55b74b4fd98476d 267 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 78 239 6.5E-28 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS01600 3250c23c5b6244b9a55b74b4fd98476d 267 SUPERFAMILY SSF52266 71 252 5.64E-49 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS01600 3250c23c5b6244b9a55b74b4fd98476d 267 Gene3D G3DSA:3.40.50.1110 74 253 3.2E-52 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 SUPERFAMILY SSF53649 202 360 2.55E-16 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 SUPERFAMILY SSF53649 2 70 2.55E-16 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 PANTHER PTHR31209:SF4 122 356 8.1E-96 T 23-04-2016 NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 PANTHER PTHR31209:SF4 1 104 8.1E-96 T 23-04-2016 NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 PANTHER PTHR31209 122 356 8.1E-96 T 23-04-2016 NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 PANTHER PTHR31209 1 104 8.1E-96 T 23-04-2016 NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 Pfam PF01676 Metalloenzyme superfamily 2 361 1.2E-18 T 23-04-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 Pfam PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 37 218 1.1E-46 T 23-04-2016 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 PIRSF PIRSF006392 1 412 1.0E-86 T 23-04-2016 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 Gene3D G3DSA:3.40.720.10 206 361 5.2E-16 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 NIDE_RS18760 bfa9c9379630edc576f34d7c81492b6b 416 Gene3D G3DSA:3.40.720.10 2 80 5.2E-16 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 NIDE_RS14285 59b63995d6328272e5173435d09742f3 294 Gene3D G3DSA:1.10.1040.10 191 285 2.6E-35 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NIDE_RS14285 59b63995d6328272e5173435d09742f3 294 Gene3D G3DSA:3.40.50.720 5 190 3.2E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS14285 59b63995d6328272e5173435d09742f3 294 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8 186 5.7E-58 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 NIDE_RS14285 59b63995d6328272e5173435d09742f3 294 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 189 285 6.1E-35 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 NIDE_RS14285 59b63995d6328272e5173435d09742f3 294 PANTHER PTHR23309 5 285 6.2E-131 T 23-04-2016 NIDE_RS14285 59b63995d6328272e5173435d09742f3 294 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 186 211 - T 23-04-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 NIDE_RS14285 59b63995d6328272e5173435d09742f3 294 SUPERFAMILY SSF51735 5 188 2.03E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS14285 59b63995d6328272e5173435d09742f3 294 SUPERFAMILY SSF48179 188 288 2.3E-35 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS14285 59b63995d6328272e5173435d09742f3 294 PIRSF PIRSF000105 3 292 3.6E-85 T 23-04-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 NIDE_RS01815 b1d41c8aace0d602f7b65282953a1371 311 Gene3D G3DSA:3.40.50.170 1 198 2.4E-73 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS01815 b1d41c8aace0d602f7b65282953a1371 311 SUPERFAMILY SSF53328 1 201 3.4E-69 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS01815 b1d41c8aace0d602f7b65282953a1371 311 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 296 1.9E-86 T 23-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS01815 b1d41c8aace0d602f7b65282953a1371 311 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 298 34.6 T 23-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS01815 b1d41c8aace0d602f7b65282953a1371 311 Gene3D G3DSA:3.10.25.10 201 303 2.9E-31 T 23-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS01815 b1d41c8aace0d602f7b65282953a1371 311 Pfam PF02911 Formyl transferase, C-terminal domain 199 296 1.1E-27 T 23-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS01815 b1d41c8aace0d602f7b65282953a1371 311 PANTHER PTHR11138 1 311 2.7E-107 T 23-04-2016 NIDE_RS01815 b1d41c8aace0d602f7b65282953a1371 311 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 127 150 - T 23-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS01815 b1d41c8aace0d602f7b65282953a1371 311 SUPERFAMILY SSF50486 199 303 5.97E-31 T 23-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 NIDE_RS01815 b1d41c8aace0d602f7b65282953a1371 311 Pfam PF00551 Formyl transferase 2 175 1.6E-44 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 509 703 5.4E-62 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 Pfam PF08447 PAS fold 307 392 1.6E-12 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 SUPERFAMILY SSF58104 424 706 1.7E-74 T 23-04-2016 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 SMART SM00283 457 704 1.2E-97 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 632 661 5.3E-56 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 555 582 5.3E-56 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 584 613 5.3E-56 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 478 507 5.3E-56 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 SMART SM00086 357 399 4.6E-6 T 23-04-2016 IPR001610 PAC motif NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 Pfam PF00042 Globin 5 98 6.2E-12 T 23-04-2016 IPR000971 Globin GO:0019825|GO:0020037 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 Gene3D G3DSA:3.30.450.20 294 398 1.2E-22 T 23-04-2016 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 289 403 8.8E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 SUPERFAMILY SSF46458 5 134 5.65E-34 T 23-04-2016 IPR009050 Globin-like NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 Gene3D G3DSA:1.10.490.10 4 135 5.3E-39 T 23-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 PANTHER PTHR32089 424 707 6.4E-141 T 23-04-2016 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 PANTHER PTHR32089:SF63 424 707 6.4E-141 T 23-04-2016 NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 SUPERFAMILY SSF55785 294 401 1.92E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS20635 e35ca1aabcf9b2aa105a36a595696700 772 Gene3D G3DSA:1.10.287.950 472 676 7.2E-63 T 23-04-2016 NIDE_RS04770 6e18b664839db6240179b010f46d8ec4 369 Pfam PF08402 TOBE domain 280 349 4.0E-9 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 NIDE_RS04770 6e18b664839db6240179b010f46d8ec4 369 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS04770 6e18b664839db6240179b010f46d8ec4 369 Pfam PF00005 ABC transporter 28 171 6.7E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS04770 6e18b664839db6240179b010f46d8ec4 369 SUPERFAMILY SSF50331 248 350 1.97E-11 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal NIDE_RS04770 6e18b664839db6240179b010f46d8ec4 369 SUPERFAMILY SSF52540 11 252 8.73E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04770 6e18b664839db6240179b010f46d8ec4 369 PANTHER PTHR24220 12 250 2.7E-115 T 23-04-2016 NIDE_RS04770 6e18b664839db6240179b010f46d8ec4 369 Gene3D G3DSA:3.40.50.300 7 244 3.0E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04770 6e18b664839db6240179b010f46d8ec4 369 PANTHER PTHR24220:SF282 12 250 2.7E-115 T 23-04-2016 NIDE_RS04770 6e18b664839db6240179b010f46d8ec4 369 SMART SM00382 36 221 1.9E-20 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS08775 94ff38ffed8aee6ebc43703328b33867 131 PANTHER PTHR22769:SF35 1 126 8.5E-28 T 23-04-2016 NIDE_RS08775 94ff38ffed8aee6ebc43703328b33867 131 PANTHER PTHR22769 1 126 8.5E-28 T 23-04-2016 NIDE_RS08775 94ff38ffed8aee6ebc43703328b33867 131 Gene3D G3DSA:3.90.79.10 4 128 1.2E-35 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 NIDE_RS08775 94ff38ffed8aee6ebc43703328b33867 131 Pfam PF00293 NUDIX domain 7 125 1.3E-17 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 NIDE_RS08775 94ff38ffed8aee6ebc43703328b33867 131 PRINTS PR00502 NUDIX hydrolase family signature 47 62 9.0E-7 T 23-04-2016 IPR020476 NUDIX hydrolase NIDE_RS08775 94ff38ffed8aee6ebc43703328b33867 131 PRINTS PR00502 NUDIX hydrolase family signature 33 47 9.0E-7 T 23-04-2016 IPR020476 NUDIX hydrolase NIDE_RS08775 94ff38ffed8aee6ebc43703328b33867 131 TIGRFAM TIGR00586 mutt: mutator mutT protein 2 128 3.2E-30 T 23-04-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 NIDE_RS08775 94ff38ffed8aee6ebc43703328b33867 131 SUPERFAMILY SSF55811 2 127 1.62E-35 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 NIDE_RS08775 94ff38ffed8aee6ebc43703328b33867 131 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NIDE_RS14750 324fbca790526128485fdabaa7cab477 605 Pfam PF01432 Peptidase family M3 212 590 2.1E-39 T 23-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 NIDE_RS14750 324fbca790526128485fdabaa7cab477 605 SUPERFAMILY SSF55486 24 587 7.67E-90 T 23-04-2016 NIDE_RS14750 324fbca790526128485fdabaa7cab477 605 PANTHER PTHR11804:SF8 151 605 6.0E-59 T 23-04-2016 NIDE_RS14750 324fbca790526128485fdabaa7cab477 605 Gene3D G3DSA:3.40.390.10 354 432 5.3E-5 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 NIDE_RS14750 324fbca790526128485fdabaa7cab477 605 Pfam PF08439 Oligopeptidase F 132 193 4.4E-9 T 23-04-2016 IPR013647 Oligopeptidase F, N-terminal domain NIDE_RS14750 324fbca790526128485fdabaa7cab477 605 PANTHER PTHR11804 151 605 6.0E-59 T 23-04-2016 NIDE_RS08135 f45da15ceffffe7e4686464471cfb142 107 SMART SM00938 10 103 8.2E-4 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NIDE_RS08135 f45da15ceffffe7e4686464471cfb142 107 Pfam PF00543 Nitrogen regulatory protein P-II 10 97 2.3E-7 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NIDE_RS08135 f45da15ceffffe7e4686464471cfb142 107 SUPERFAMILY SSF54913 3 104 2.75E-21 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta NIDE_RS08135 f45da15ceffffe7e4686464471cfb142 107 Gene3D G3DSA:3.30.70.120 7 79 7.6E-6 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal NIDE_RS06255 5df23d985a7b541440a007d86eab89c3 207 PANTHER PTHR39555 1 168 5.6E-26 T 23-04-2016 NIDE_RS06255 5df23d985a7b541440a007d86eab89c3 207 Pfam PF04350 Pilus assembly protein, PilO 46 177 1.3E-23 T 23-04-2016 IPR007445 Pilus assembly protein, PilO NIDE_RS06255 5df23d985a7b541440a007d86eab89c3 207 PANTHER PTHR39555:SF1 1 168 5.6E-26 T 23-04-2016 NIDE_RS06255 5df23d985a7b541440a007d86eab89c3 207 Gene3D G3DSA:3.30.70.60 91 198 3.8E-19 T 23-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 NIDE_RS00200 53d792df75223f0c059464b444ed6d18 258 Gene3D G3DSA:3.40.50.1000 133 257 5.1E-34 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS00200 53d792df75223f0c059464b444ed6d18 258 Gene3D G3DSA:3.40.50.1000 17 35 5.1E-34 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS00200 53d792df75223f0c059464b444ed6d18 258 Gene3D G3DSA:1.10.150.240 36 126 1.3E-6 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 NIDE_RS00200 53d792df75223f0c059464b444ed6d18 258 PANTHER PTHR18901:SF19 23 256 4.2E-62 T 23-04-2016 NIDE_RS00200 53d792df75223f0c059464b444ed6d18 258 Pfam PF13419 Haloacid dehalogenase-like hydrolase 24 225 2.7E-17 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS00200 53d792df75223f0c059464b444ed6d18 258 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 123 229 2.1E-12 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS00200 53d792df75223f0c059464b444ed6d18 258 PANTHER PTHR18901 23 256 4.2E-62 T 23-04-2016 NIDE_RS00200 53d792df75223f0c059464b444ed6d18 258 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 22 227 8.4E-47 T 23-04-2016 IPR010976 Beta-phosphoglucomutase hydrolase NIDE_RS00200 53d792df75223f0c059464b444ed6d18 258 SUPERFAMILY SSF56784 21 257 1.41E-38 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS00950 a65d44d8c4b763a955dc877c77a43304 256 Pfam PF00106 short chain dehydrogenase 11 194 8.2E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00950 a65d44d8c4b763a955dc877c77a43304 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 6.37E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00950 a65d44d8c4b763a955dc877c77a43304 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 6.37E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00950 a65d44d8c4b763a955dc877c77a43304 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 6.37E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00950 a65d44d8c4b763a955dc877c77a43304 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 6.37E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00950 a65d44d8c4b763a955dc877c77a43304 256 SUPERFAMILY SSF51735 4 250 1.06E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00950 a65d44d8c4b763a955dc877c77a43304 256 Gene3D G3DSA:3.40.50.720 9 254 6.7E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00950 a65d44d8c4b763a955dc877c77a43304 256 PANTHER PTHR24322 13 139 1.3E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00950 a65d44d8c4b763a955dc877c77a43304 256 PANTHER PTHR24322 155 187 1.3E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS00950 a65d44d8c4b763a955dc877c77a43304 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NIDE_RS15265 71eb0f9818e3eff195241fe4718d623b 169 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 5 159 1.6E-42 T 23-04-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 NIDE_RS15265 71eb0f9818e3eff195241fe4718d623b 169 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 5 134 5.9E-46 T 23-04-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 NIDE_RS15265 71eb0f9818e3eff195241fe4718d623b 169 Gene3D G3DSA:3.40.50.300 2 161 3.5E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15265 71eb0f9818e3eff195241fe4718d623b 169 PANTHER PTHR40072 5 134 2.0E-27 T 23-04-2016 NIDE_RS15265 71eb0f9818e3eff195241fe4718d623b 169 PANTHER PTHR40072:SF2 5 134 2.0E-27 T 23-04-2016 NIDE_RS15265 71eb0f9818e3eff195241fe4718d623b 169 SUPERFAMILY SSF52540 3 160 1.31E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09875 05d959d89bd5cdd39e65f139d9e6deef 327 Gene3D G3DSA:3.60.130.10 198 319 1.3E-69 T 23-04-2016 NIDE_RS09875 05d959d89bd5cdd39e65f139d9e6deef 327 Gene3D G3DSA:3.60.130.10 31 166 1.3E-69 T 23-04-2016 NIDE_RS09875 05d959d89bd5cdd39e65f139d9e6deef 327 SUPERFAMILY SSF51197 13 317 6.41E-88 T 23-04-2016 NIDE_RS09875 05d959d89bd5cdd39e65f139d9e6deef 327 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 48 316 8.4E-46 T 23-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 NIDE_RS09875 05d959d89bd5cdd39e65f139d9e6deef 327 PANTHER PTHR10696 46 320 2.1E-84 T 23-04-2016 NIDE_RS09875 05d959d89bd5cdd39e65f139d9e6deef 327 PANTHER PTHR10696:SF27 46 320 2.1E-84 T 23-04-2016 NIDE_RS14010 804ab0bae56fe97cc80bc531dc032614 499 TIGRFAM TIGR03688 pupylate_PafA2: proteasome accessory factor PafA2 11 485 8.6E-170 T 23-04-2016 IPR022366 Pup deamidase GO:0008233|GO:0016811 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00997 NIDE_RS14010 804ab0bae56fe97cc80bc531dc032614 499 PANTHER PTHR42307:SF2 52 499 4.3E-124 T 23-04-2016 NIDE_RS14010 804ab0bae56fe97cc80bc531dc032614 499 Pfam PF03136 Pup-ligase protein 11 455 2.8E-169 T 23-04-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 NIDE_RS14010 804ab0bae56fe97cc80bc531dc032614 499 PANTHER PTHR42307 52 499 4.3E-124 T 23-04-2016 NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 PANTHER PTHR22572:SF117 117 300 1.8E-64 T 23-04-2016 NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 Gene3D G3DSA:2.160.10.10 146 311 1.9E-44 T 23-04-2016 NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 PANTHER PTHR22572 117 300 1.8E-64 T 23-04-2016 NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 SUPERFAMILY SSF51161 38 319 3.33E-75 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 15 333 3.9E-109 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 227 262 8.7E-6 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 150 184 8.0E-8 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 112 141 6.1E-7 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 272 300 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 135 163 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 117 145 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 15 330 34.369 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 28 93 2.5E-14 T 23-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 NIDE_RS12135 24cbd0d02e1544b4384265cc27ca3279 360 Gene3D G3DSA:2.160.10.10 107 145 2.1E-10 T 23-04-2016 NIDE_RS03380 13bee9ceaca2730162a9ebb67cf41706 387 PANTHER PTHR10859:SF86 68 380 6.5E-143 T 23-04-2016 NIDE_RS03380 13bee9ceaca2730162a9ebb67cf41706 387 SUPERFAMILY SSF53448 79 331 4.31E-35 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS03380 13bee9ceaca2730162a9ebb67cf41706 387 Pfam PF00535 Glycosyl transferase family 2 85 244 1.8E-29 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS03380 13bee9ceaca2730162a9ebb67cf41706 387 Gene3D G3DSA:3.90.550.10 81 200 1.9E-25 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS03380 13bee9ceaca2730162a9ebb67cf41706 387 PANTHER PTHR10859 68 380 6.5E-143 T 23-04-2016 NIDE_RS17555 b3f8b7ad5866ad9707fcef0dc9196f5e 586 Gene3D G3DSA:3.40.50.980 226 388 6.9E-31 T 23-04-2016 NIDE_RS17555 b3f8b7ad5866ad9707fcef0dc9196f5e 586 SUPERFAMILY SSF56801 42 576 1.14E-155 T 23-04-2016 NIDE_RS17555 b3f8b7ad5866ad9707fcef0dc9196f5e 586 PANTHER PTHR24095 47 585 1.8E-186 T 23-04-2016 NIDE_RS17555 b3f8b7ad5866ad9707fcef0dc9196f5e 586 ProSitePatterns PS00455 Putative AMP-binding domain signature. 221 232 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS17555 b3f8b7ad5866ad9707fcef0dc9196f5e 586 Gene3D G3DSA:3.30.300.30 471 572 8.1E-27 T 23-04-2016 NIDE_RS17555 b3f8b7ad5866ad9707fcef0dc9196f5e 586 Gene3D G3DSA:2.30.38.10 389 470 1.5E-20 T 23-04-2016 NIDE_RS17555 b3f8b7ad5866ad9707fcef0dc9196f5e 586 Pfam PF13193 AMP-binding enzyme C-terminal domain 485 563 6.1E-23 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS17555 b3f8b7ad5866ad9707fcef0dc9196f5e 586 Gene3D G3DSA:3.40.50.980 62 225 2.8E-32 T 23-04-2016 NIDE_RS17555 b3f8b7ad5866ad9707fcef0dc9196f5e 586 Pfam PF00501 AMP-binding enzyme 64 476 3.1E-86 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS18680 41b1636ceaa039b4abbf595f392de9b0 621 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 55 191 1.3E-16 T 23-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 NIDE_RS18680 41b1636ceaa039b4abbf595f392de9b0 621 Pfam PF00437 Type II/IV secretion system protein 233 498 3.5E-67 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS18680 41b1636ceaa039b4abbf595f392de9b0 621 PANTHER PTHR30258:SF1 55 618 8.4E-176 T 23-04-2016 NIDE_RS18680 41b1636ceaa039b4abbf595f392de9b0 621 SUPERFAMILY SSF52540 221 617 2.51E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18680 41b1636ceaa039b4abbf595f392de9b0 621 Gene3D G3DSA:3.40.50.300 340 619 2.6E-91 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18680 41b1636ceaa039b4abbf595f392de9b0 621 SUPERFAMILY SSF160246 53 184 3.92E-17 T 23-04-2016 NIDE_RS18680 41b1636ceaa039b4abbf595f392de9b0 621 PANTHER PTHR30258 55 618 8.4E-176 T 23-04-2016 NIDE_RS18680 41b1636ceaa039b4abbf595f392de9b0 621 Gene3D G3DSA:3.30.450.90 204 334 8.1E-44 T 23-04-2016 NIDE_RS18680 41b1636ceaa039b4abbf595f392de9b0 621 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 429 443 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 Gene3D G3DSA:1.10.10.10 137 228 5.0E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 SMART SM00421 165 222 7.2E-22 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 198 2.0E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 182 2.0E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 198 210 2.0E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 SMART SM00448 14 131 8.9E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 SUPERFAMILY SSF52172 12 143 5.98E-30 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 Pfam PF00072 Response regulator receiver domain 16 131 3.8E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 Gene3D G3DSA:3.40.50.2300 14 136 3.6E-31 T 23-04-2016 NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 SUPERFAMILY SSF46894 161 227 1.7E-20 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 Pfam PF00196 Bacterial regulatory proteins, luxR family 167 222 6.2E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04800 0c15d4b98829ffdf78dbb354fda1ad01 228 PANTHER PTHR26402 14 223 2.7E-50 T 23-04-2016 NIDE_RS13585 1c4fb6f466a0ab1e7eb5ad005f11b0e0 259 PIRSF PIRSF005902 1 259 6.3E-83 T 23-04-2016 IPR001130 TatD family GO:0016788 NIDE_RS13585 1c4fb6f466a0ab1e7eb5ad005f11b0e0 259 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 257 2.3E-90 T 23-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 NIDE_RS13585 1c4fb6f466a0ab1e7eb5ad005f11b0e0 259 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 124 134 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 NIDE_RS13585 1c4fb6f466a0ab1e7eb5ad005f11b0e0 259 PANTHER PTHR10060 1 259 8.1E-126 T 23-04-2016 IPR001130 TatD family GO:0016788 NIDE_RS13585 1c4fb6f466a0ab1e7eb5ad005f11b0e0 259 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 NIDE_RS13585 1c4fb6f466a0ab1e7eb5ad005f11b0e0 259 SUPERFAMILY SSF51556 2 258 1.54E-92 T 23-04-2016 IPR032466 Metal-dependent hydrolase NIDE_RS13585 1c4fb6f466a0ab1e7eb5ad005f11b0e0 259 Pfam PF01026 TatD related DNase 3 256 3.5E-84 T 23-04-2016 IPR001130 TatD family GO:0016788 NIDE_RS13585 1c4fb6f466a0ab1e7eb5ad005f11b0e0 259 PANTHER PTHR10060:SF20 1 259 8.1E-126 T 23-04-2016 NIDE_RS13585 1c4fb6f466a0ab1e7eb5ad005f11b0e0 259 Gene3D G3DSA:3.20.20.140 1 258 1.3E-98 T 23-04-2016 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 Pfam PF13432 Tetratricopeptide repeat 143 181 0.0018 T 23-04-2016 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 Pfam PF13432 Tetratricopeptide repeat 61 122 0.0013 T 23-04-2016 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 Gene3D G3DSA:1.25.40.10 131 226 4.0E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 SMART SM00028 91 124 0.037 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 SMART SM00028 160 193 10.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 SMART SM00028 125 159 15.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 SMART SM00028 194 227 21.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 SMART SM00028 57 90 4.9 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 PANTHER PTHR23083 27 226 3.6E-30 T 23-04-2016 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 Gene3D G3DSA:1.25.40.10 30 130 6.0E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS16780 5ff217122d45b6f2bfb0d8a5c61e41cb 227 SUPERFAMILY SSF48452 52 226 2.28E-23 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS05005 d6d83bca9c49060afd07f5cdf94f4105 412 Pfam PF11871 Domain of unknown function (DUF3391) 6 132 1.3E-22 T 23-04-2016 IPR021812 Protein of unknown function DUF3391 NIDE_RS05005 d6d83bca9c49060afd07f5cdf94f4105 412 Gene3D G3DSA:1.10.3210.10 166 293 2.8E-13 T 23-04-2016 IPR006674 HD domain NIDE_RS05005 d6d83bca9c49060afd07f5cdf94f4105 412 SUPERFAMILY SSF109604 164 317 1.37E-13 T 23-04-2016 NIDE_RS05005 d6d83bca9c49060afd07f5cdf94f4105 412 SMART SM00471 162 302 0.0019 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS05005 d6d83bca9c49060afd07f5cdf94f4105 412 TIGRFAM TIGR00277 HDIG: HDIG domain 168 261 4.0E-7 T 23-04-2016 IPR006675 HDIG domain NIDE_RS05005 d6d83bca9c49060afd07f5cdf94f4105 412 Pfam PF13487 HD domain 222 271 4.4E-10 T 23-04-2016 NIDE_RS03390 61982ac0c3c42889bdd91926345abe0e 369 Gene3D G3DSA:3.40.50.2000 189 304 4.5E-11 T 23-04-2016 NIDE_RS03390 61982ac0c3c42889bdd91926345abe0e 369 Gene3D G3DSA:3.40.50.720 144 157 6.0E-4 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03390 61982ac0c3c42889bdd91926345abe0e 369 Gene3D G3DSA:3.40.50.720 18 49 6.0E-4 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03390 61982ac0c3c42889bdd91926345abe0e 369 SUPERFAMILY SSF53756 9 356 7.63E-39 T 23-04-2016 NIDE_RS03390 61982ac0c3c42889bdd91926345abe0e 369 PANTHER PTHR12526 1 305 2.7E-28 T 23-04-2016 NIDE_RS03390 61982ac0c3c42889bdd91926345abe0e 369 Pfam PF13439 Glycosyltransferase Family 4 20 185 7.6E-14 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS03390 61982ac0c3c42889bdd91926345abe0e 369 Pfam PF13692 Glycosyl transferases group 1 196 333 1.5E-10 T 23-04-2016 NIDE_RS05155 1dce9c268362aac173a6df1eb56cc2d8 712 PANTHER PTHR11920:SF341 425 640 3.3E-80 T 23-04-2016 NIDE_RS05155 1dce9c268362aac173a6df1eb56cc2d8 712 PANTHER PTHR11920:SF341 692 709 3.3E-80 T 23-04-2016 NIDE_RS05155 1dce9c268362aac173a6df1eb56cc2d8 712 SUPERFAMILY SSF55073 447 635 2.67E-58 T 23-04-2016 IPR029787 Nucleotide cyclase NIDE_RS05155 1dce9c268362aac173a6df1eb56cc2d8 712 SMART SM00044 417 616 4.9E-18 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 NIDE_RS05155 1dce9c268362aac173a6df1eb56cc2d8 712 Pfam PF05226 CHASE2 domain 21 350 3.6E-59 T 23-04-2016 IPR007890 CHASE2 NIDE_RS05155 1dce9c268362aac173a6df1eb56cc2d8 712 PANTHER PTHR11920 425 640 3.3E-80 T 23-04-2016 NIDE_RS05155 1dce9c268362aac173a6df1eb56cc2d8 712 PANTHER PTHR11920 692 709 3.3E-80 T 23-04-2016 NIDE_RS05155 1dce9c268362aac173a6df1eb56cc2d8 712 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 451 631 2.0E-33 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 NIDE_RS05155 1dce9c268362aac173a6df1eb56cc2d8 712 Gene3D G3DSA:3.30.70.1230 450 636 6.6E-48 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 NIDE_RS05155 1dce9c268362aac173a6df1eb56cc2d8 712 SMART SM01080 33 356 4.8E-59 T 23-04-2016 IPR007890 CHASE2 NIDE_RS20810 05a9447408717c0d838e1880b630b565 338 PANTHER PTHR10108:SF739 134 277 1.8E-27 T 23-04-2016 NIDE_RS20810 05a9447408717c0d838e1880b630b565 338 Pfam PF13489 Methyltransferase domain 133 274 1.2E-25 T 23-04-2016 NIDE_RS20810 05a9447408717c0d838e1880b630b565 338 SUPERFAMILY SSF53335 121 294 1.13E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20810 05a9447408717c0d838e1880b630b565 338 PANTHER PTHR10108 134 277 1.8E-27 T 23-04-2016 NIDE_RS20810 05a9447408717c0d838e1880b630b565 338 Gene3D G3DSA:3.40.50.150 120 283 7.3E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 Pfam PF04545 Sigma-70, region 4 278 326 5.0E-11 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 Gene3D G3DSA:1.10.601.10 25 167 6.5E-35 T 23-04-2016 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 SUPERFAMILY SSF88946 64 170 1.44E-33 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 PRINTS PR00046 Major sigma-70 factor signature 279 291 9.1E-21 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 PRINTS PR00046 Major sigma-70 factor signature 298 313 9.1E-21 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 PRINTS PR00046 Major sigma-70 factor signature 126 139 9.1E-21 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 PRINTS PR00046 Major sigma-70 factor signature 150 158 9.1E-21 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 PRINTS PR00046 Major sigma-70 factor signature 313 324 9.1E-21 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 Pfam PF00140 Sigma-70 factor, region 1.2 65 86 3.7E-4 T 23-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 SUPERFAMILY SSF88659 235 332 3.74E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 Gene3D G3DSA:1.10.10.10 270 331 4.7E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 126 139 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 98 327 1.6E-25 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 Pfam PF04542 Sigma-70 region 2 102 166 1.1E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS06400 1a39e83ab26999a870e840293276099e 340 PANTHER PTHR30376 51 328 2.7E-66 T 23-04-2016 NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 Pfam PF01514 Secretory protein of YscJ/FliF family 20 209 6.4E-71 T 23-04-2016 IPR006182 Secretory protein YscJ/FliF NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 5 517 1.1E-109 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 PRINTS PR01009 Flagellar M-ring protein signature 142 156 1.5E-36 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 PRINTS PR01009 Flagellar M-ring protein signature 329 353 1.5E-36 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 PRINTS PR01009 Flagellar M-ring protein signature 255 273 1.5E-36 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 PRINTS PR01009 Flagellar M-ring protein signature 110 128 1.5E-36 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 PRINTS PR01009 Flagellar M-ring protein signature 185 203 1.5E-36 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 PANTHER PTHR30046:SF0 1 518 5.2E-150 T 23-04-2016 NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 PIRSF PIRSF004862 2 518 7.9E-142 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 PANTHER PTHR30046 1 518 5.2E-150 T 23-04-2016 NIDE_RS10460 9cfeeb84f959186d1439ba92b776ec37 518 Pfam PF08345 Flagellar M-ring protein C-terminal 242 412 2.1E-48 T 23-04-2016 IPR013556 Flagellar M-ring C-terminal NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 PANTHER PTHR24031 21 535 1.6E-195 T 23-04-2016 NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 Pfam PF00271 Helicase conserved C-terminal domain 249 356 7.8E-30 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 PANTHER PTHR24031:SF261 21 535 1.6E-195 T 23-04-2016 NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 Pfam PF03880 DbpA RNA binding domain 502 572 2.6E-23 T 23-04-2016 IPR005580 DbpA, RNA-binding domain NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 Gene3D G3DSA:3.40.50.300 15 221 3.8E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 SMART SM00490 275 356 1.8E-36 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 Pfam PF00270 DEAD/DEAH box helicase 43 206 4.6E-50 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 SMART SM00487 38 239 1.6E-64 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 167 175 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 Gene3D G3DSA:3.40.50.300 222 385 3.1E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16640 71ced3766a310b3f8d8c0492afa60f56 576 SUPERFAMILY SSF52540 88 377 3.5E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 3 1019 0.0 T 23-04-2016 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 Gene3D G3DSA:3.30.70.1430 42 129 1.1E-21 T 23-04-2016 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 PANTHER PTHR32063 1 1025 0.0 T 23-04-2016 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 SUPERFAMILY SSF82714 713 798 8.37E-15 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 2.7E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 2.7E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 2.7E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 PRINTS PR00702 Acriflavin resistance protein family signature 359 380 2.7E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 PRINTS PR00702 Acriflavin resistance protein family signature 443 466 2.7E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 PRINTS PR00702 Acriflavin resistance protein family signature 468 491 2.7E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 SUPERFAMILY SSF82714 184 267 1.57E-15 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 SUPERFAMILY SSF82693 42 131 2.56E-19 T 23-04-2016 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 Gene3D G3DSA:3.30.2090.10 714 801 1.1E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 Gene3D G3DSA:3.30.2090.10 183 268 3.2E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 Gene3D G3DSA:1.10.3850.10 282 496 7.5E-55 T 23-04-2016 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 Gene3D G3DSA:1.10.3850.10 805 1021 3.5E-57 T 23-04-2016 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 Pfam PF00873 AcrB/AcrD/AcrF family 5 1015 8.8E-283 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 SUPERFAMILY SSF82866 798 1020 2.88E-53 T 23-04-2016 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 SUPERFAMILY SSF82866 292 495 8.63E-38 T 23-04-2016 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 SUPERFAMILY SSF82693 138 182 1.54E-18 T 23-04-2016 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 SUPERFAMILY SSF82693 269 326 1.54E-18 T 23-04-2016 NIDE_RS08105 ce2b48f4a342b0fdd5244d3755d4f7be 1040 PANTHER PTHR32063:SF24 1 1025 0.0 T 23-04-2016 NIDE_RS11250 c1fda32345bccfdf56607efba66f10b7 434 Gene3D G3DSA:3.50.50.60 85 284 4.2E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS11250 c1fda32345bccfdf56607efba66f10b7 434 SUPERFAMILY SSF51971 224 284 1.65E-26 T 23-04-2016 NIDE_RS11250 c1fda32345bccfdf56607efba66f10b7 434 SUPERFAMILY SSF51971 2 178 1.65E-26 T 23-04-2016 NIDE_RS11250 c1fda32345bccfdf56607efba66f10b7 434 PANTHER PTHR11938:SF4 44 427 1.0E-33 T 23-04-2016 NIDE_RS11250 c1fda32345bccfdf56607efba66f10b7 434 PANTHER PTHR11938 44 427 1.0E-33 T 23-04-2016 NIDE_RS11250 c1fda32345bccfdf56607efba66f10b7 434 Gene3D G3DSA:3.40.50.720 2 84 9.5E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS11250 c1fda32345bccfdf56607efba66f10b7 434 Gene3D G3DSA:3.40.50.720 285 427 9.5E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PANTHER PTHR30477 3 280 4.1E-62 T 23-04-2016 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PANTHER PTHR30477:SF1 3 280 4.1E-62 T 23-04-2016 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PRINTS PR00691 Adhesin B signature 58 76 3.6E-7 T 23-04-2016 IPR006129 Adhesin B GO:0007155 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PRINTS PR00691 Adhesin B signature 284 302 3.6E-7 T 23-04-2016 IPR006129 Adhesin B GO:0007155 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PRINTS PR00691 Adhesin B signature 139 158 3.6E-7 T 23-04-2016 IPR006129 Adhesin B GO:0007155 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PRINTS PR00691 Adhesin B signature 77 96 3.6E-7 T 23-04-2016 IPR006129 Adhesin B GO:0007155 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PRINTS PR00691 Adhesin B signature 33 54 3.6E-7 T 23-04-2016 IPR006129 Adhesin B GO:0007155 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PRINTS PR00690 Adhesin family signature 195 216 9.0E-7 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PRINTS PR00690 Adhesin family signature 77 94 9.0E-7 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PRINTS PR00690 Adhesin family signature 64 77 9.0E-7 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 PRINTS PR00690 Adhesin family signature 33 51 9.0E-7 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 SUPERFAMILY SSF53807 29 306 6.38E-74 T 23-04-2016 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 Gene3D G3DSA:3.40.50.1980 25 190 8.7E-45 T 23-04-2016 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 Pfam PF01297 Zinc-uptake complex component A periplasmic 36 304 6.0E-65 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 NIDE_RS01770 7b3ee6dd62691fc2d5f71605e2fa2b70 308 Gene3D G3DSA:3.40.50.1980 198 306 5.1E-28 T 23-04-2016 NIDE_RS18530 a2f39e2b04d5e9ac36b9b6d9116ecffb 270 Gene3D G3DSA:3.40.50.620 87 223 3.8E-25 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS18530 a2f39e2b04d5e9ac36b9b6d9116ecffb 270 Pfam PF02698 DUF218 domain 90 237 7.3E-29 T 23-04-2016 IPR003848 Domain of unknown function DUF218 NIDE_RS18530 a2f39e2b04d5e9ac36b9b6d9116ecffb 270 PANTHER PTHR30336:SF1 5 268 8.1E-42 T 23-04-2016 NIDE_RS18530 a2f39e2b04d5e9ac36b9b6d9116ecffb 270 PANTHER PTHR30336 5 268 8.1E-42 T 23-04-2016 NIDE_RS03015 3d7c973ae3dbc4cd2ade2e3b5d6ffd24 738 Gene3D G3DSA:2.40.170.20 170 737 7.0E-61 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS03015 3d7c973ae3dbc4cd2ade2e3b5d6ffd24 738 Gene3D G3DSA:2.170.130.10 49 169 3.1E-28 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS03015 3d7c973ae3dbc4cd2ade2e3b5d6ffd24 738 PANTHER PTHR32552 26 738 3.3E-93 T 23-04-2016 NIDE_RS03015 3d7c973ae3dbc4cd2ade2e3b5d6ffd24 738 PANTHER PTHR32552:SF0 26 738 3.3E-93 T 23-04-2016 NIDE_RS03015 3d7c973ae3dbc4cd2ade2e3b5d6ffd24 738 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 167 4.8E-19 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS03015 3d7c973ae3dbc4cd2ade2e3b5d6ffd24 738 Pfam PF00593 TonB dependent receptor 485 736 6.6E-19 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS03015 3d7c973ae3dbc4cd2ade2e3b5d6ffd24 738 SUPERFAMILY SSF56935 45 738 5.27E-81 T 23-04-2016 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 339 361 2.6E-7 T 23-04-2016 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.6E-7 T 23-04-2016 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 Gene3D G3DSA:3.90.700.10 227 332 3.6E-35 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 SUPERFAMILY SSF56425 221 336 8.22E-38 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 Gene3D G3DSA:3.50.50.60 3 226 1.4E-113 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 Gene3D G3DSA:3.50.50.60 333 395 1.4E-113 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 PANTHER PTHR11632 1 550 4.8E-282 T 23-04-2016 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 38 47 - T 23-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 Pfam PF02910 Fumarate reductase flavoprotein C-term 430 550 3.0E-38 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 Gene3D G3DSA:4.10.80.40 527 551 3.4E-12 T 23-04-2016 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 Gene3D G3DSA:1.20.58.100 417 526 1.2E-35 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 SUPERFAMILY SSF46977 422 550 4.45E-44 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 SUPERFAMILY SSF51905 340 404 2.81E-78 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 SUPERFAMILY SSF51905 2 244 2.81E-78 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 PIRSF PIRSF000171 1 547 9.2E-55 T 23-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 PANTHER PTHR11632:SF5 1 550 4.8E-282 T 23-04-2016 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 5 550 8.5E-232 T 23-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 NIDE_RS01425 487096780c8a587f48fc5efb64406972 551 Pfam PF00890 FAD binding domain 5 376 1.6E-113 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 PANTHER PTHR32305 40 110 3.5E-48 T 23-04-2016 NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 266 307 2.0E-10 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 371 406 2.4E-8 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 434 463 4.0E-4 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 73 111 2.0E-9 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 413 448 5.3E-7 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 181 218 5.5E-5 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 52 92 1.1E-9 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 227 262 1.3E-5 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 37 68 2.7E-5 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 329 369 1.4E-7 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 308 330 3.7E-4 T 23-04-2016 IPR006530 YD repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 PANTHER PTHR32305:SF6 153 508 3.5E-48 T 23-04-2016 NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 SUPERFAMILY SSF63829 185 439 4.77E-8 T 23-04-2016 NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 PANTHER PTHR32305 153 508 3.5E-48 T 23-04-2016 NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 PANTHER PTHR32305:SF6 40 110 3.5E-48 T 23-04-2016 NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 350 386 2.5E-9 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 245 278 3.2E-6 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 308 342 4.1E-10 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 73 110 1.3E-7 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 160 195 3.6E-6 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 52 86 4.9E-7 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 35 65 2.0E-6 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 371 406 2.0E-9 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 287 321 3.4E-9 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 413 447 9.5E-9 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 181 211 9.0E-6 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 434 466 1.4E-4 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07865 0eefc5b56d68818dee56d5be05c44190 623 Pfam PF05593 RHS Repeat 266 302 3.5E-9 T 23-04-2016 IPR031325 RHS repeat NIDE_RS13145 14927ebe6e6d725d5dcea657653c0254 614 Pfam PF02543 Carbamoyltransferase N-terminus 3 348 2.6E-104 T 23-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 NIDE_RS13145 14927ebe6e6d725d5dcea657653c0254 614 SUPERFAMILY SSF53067 131 216 2.36E-18 T 23-04-2016 NIDE_RS13145 14927ebe6e6d725d5dcea657653c0254 614 SUPERFAMILY SSF53067 254 353 2.36E-18 T 23-04-2016 NIDE_RS13145 14927ebe6e6d725d5dcea657653c0254 614 SUPERFAMILY SSF53067 1 78 2.36E-18 T 23-04-2016 NIDE_RS13145 14927ebe6e6d725d5dcea657653c0254 614 Pfam PF16861 Carbamoyltransferase C-terminus 406 594 1.7E-74 T 23-04-2016 IPR031730 Carbamoyltransferase, C-terminal NIDE_RS13145 14927ebe6e6d725d5dcea657653c0254 614 PANTHER PTHR34847 1 491 3.2E-134 T 23-04-2016 NIDE_RS13145 14927ebe6e6d725d5dcea657653c0254 614 PANTHER PTHR34847 512 610 3.2E-134 T 23-04-2016 NIDE_RS13430 b615aef510e5946892f50b6b7291f35c 80 Gene3D G3DSA:3.30.920.30 7 63 4.2E-11 T 23-04-2016 NIDE_RS13430 b615aef510e5946892f50b6b7291f35c 80 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 11 62 2.0E-12 T 23-04-2016 IPR012933 HicA mRNA interferase family GO:0003729 NIDE_RS13430 b615aef510e5946892f50b6b7291f35c 80 SUPERFAMILY SSF54786 7 64 1.69E-9 T 23-04-2016 NIDE_RS13750 8cd835d3d0a90857fe0195c0f8dde5d3 260 SUPERFAMILY SSF53335 72 219 5.15E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13750 8cd835d3d0a90857fe0195c0f8dde5d3 260 Pfam PF13578 Methyltransferase domain 106 218 6.1E-16 T 23-04-2016 NIDE_RS13750 8cd835d3d0a90857fe0195c0f8dde5d3 260 Gene3D G3DSA:3.40.50.150 79 223 1.5E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00860 7f8d3bc04c26f0a563f2b60579f6878d 305 SMART SM00422 4 73 2.4E-10 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS00860 7f8d3bc04c26f0a563f2b60579f6878d 305 SUPERFAMILY SSF46955 5 84 1.1E-14 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS00860 7f8d3bc04c26f0a563f2b60579f6878d 305 Gene3D G3DSA:1.10.1660.10 5 109 1.3E-15 T 23-04-2016 NIDE_RS00860 7f8d3bc04c26f0a563f2b60579f6878d 305 Gene3D G3DSA:3.40.50.280 178 270 2.6E-11 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS00860 7f8d3bc04c26f0a563f2b60579f6878d 305 SUPERFAMILY SSF52242 177 290 8.48E-13 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS00860 7f8d3bc04c26f0a563f2b60579f6878d 305 Pfam PF02607 B12 binding domain 96 164 6.4E-8 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain NIDE_RS00860 7f8d3bc04c26f0a563f2b60579f6878d 305 Pfam PF02310 B12 binding domain 179 278 4.7E-11 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS00860 7f8d3bc04c26f0a563f2b60579f6878d 305 Pfam PF13411 MerR HTH family regulatory protein 5 69 1.3E-15 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS02515 d07031f6db634d7d8b5382e225837b89 325 PANTHER PTHR35271 14 325 1.6E-48 T 23-04-2016 NIDE_RS02515 d07031f6db634d7d8b5382e225837b89 325 Pfam PF04392 ABC transporter substrate binding protein 59 323 4.8E-37 T 23-04-2016 IPR007487 ABC transporter, substrate-binding protein NIDE_RS02515 d07031f6db634d7d8b5382e225837b89 325 Gene3D G3DSA:3.40.50.2300 47 159 8.3E-18 T 23-04-2016 NIDE_RS02515 d07031f6db634d7d8b5382e225837b89 325 Gene3D G3DSA:3.40.50.2300 160 284 2.6E-30 T 23-04-2016 NIDE_RS03800 f14abffaf6c6272ed4fb9bdce358f736 366 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 265 359 3.2E-19 T 23-04-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II NIDE_RS03800 f14abffaf6c6272ed4fb9bdce358f736 366 Gene3D G3DSA:3.40.50.970 8 254 4.3E-39 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS03800 f14abffaf6c6272ed4fb9bdce358f736 366 PANTHER PTHR32154 7 363 2.4E-114 T 23-04-2016 NIDE_RS03800 f14abffaf6c6272ed4fb9bdce358f736 366 PANTHER PTHR32154:SF21 7 363 2.4E-114 T 23-04-2016 NIDE_RS03800 f14abffaf6c6272ed4fb9bdce358f736 366 SUPERFAMILY SSF52922 262 364 6.02E-24 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS03800 f14abffaf6c6272ed4fb9bdce358f736 366 SUPERFAMILY SSF52518 8 255 1.72E-40 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS03800 f14abffaf6c6272ed4fb9bdce358f736 366 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 21 240 3.1E-51 T 23-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 NIDE_RS03800 f14abffaf6c6272ed4fb9bdce358f736 366 Gene3D G3DSA:3.40.50.920 262 363 3.8E-22 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS13240 8d526179f6719ba1dfdd673c347efc18 295 Pfam PF11959 Domain of unknown function (DUF3473) 150 277 5.5E-47 T 23-04-2016 IPR022560 Domain of unknown function DUF3473 NIDE_RS13240 8d526179f6719ba1dfdd673c347efc18 295 Gene3D G3DSA:3.20.20.370 9 253 3.5E-52 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS13240 8d526179f6719ba1dfdd673c347efc18 295 SUPERFAMILY SSF88713 9 259 8.16E-45 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS13240 8d526179f6719ba1dfdd673c347efc18 295 Pfam PF01522 Polysaccharide deacetylase 35 141 2.2E-22 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS13240 8d526179f6719ba1dfdd673c347efc18 295 PANTHER PTHR10587 18 151 6.6E-29 T 23-04-2016 NIDE_RS13240 8d526179f6719ba1dfdd673c347efc18 295 PANTHER PTHR10587:SF85 18 151 6.6E-29 T 23-04-2016 NIDE_RS13240 8d526179f6719ba1dfdd673c347efc18 295 TIGRFAM TIGR03006 pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily 9 277 3.9E-113 T 23-04-2016 IPR014344 PEP-CTERM locus, polysaccharide deactylase NIDE_RS14835 f830c9328f0e198101414790785eb292 380 PRINTS PR00344 Bacterial sensor protein C-terminal signature 318 332 5.0E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS14835 f830c9328f0e198101414790785eb292 380 PRINTS PR00344 Bacterial sensor protein C-terminal signature 337 355 5.0E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS14835 f830c9328f0e198101414790785eb292 380 PRINTS PR00344 Bacterial sensor protein C-terminal signature 361 374 5.0E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS14835 f830c9328f0e198101414790785eb292 380 SMART SM00387 282 377 7.8E-10 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS14835 f830c9328f0e198101414790785eb292 380 Pfam PF07730 Histidine kinase 177 243 3.3E-15 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NIDE_RS14835 f830c9328f0e198101414790785eb292 380 PANTHER PTHR24421 172 379 1.6E-47 T 23-04-2016 NIDE_RS14835 f830c9328f0e198101414790785eb292 380 PANTHER PTHR24421 13 122 1.6E-47 T 23-04-2016 NIDE_RS14835 f830c9328f0e198101414790785eb292 380 SUPERFAMILY SSF55874 252 374 3.27E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS14835 f830c9328f0e198101414790785eb292 380 Gene3D G3DSA:3.30.565.10 249 375 4.6E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS14835 f830c9328f0e198101414790785eb292 380 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 287 375 3.3E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS08925 ff000e9cd6a459fe00f6f40b8484f9bf 595 PANTHER PTHR34597:SF1 93 594 1.9E-62 T 23-04-2016 NIDE_RS08925 ff000e9cd6a459fe00f6f40b8484f9bf 595 Gene3D G3DSA:2.40.160.50 214 588 1.5E-62 T 23-04-2016 NIDE_RS08925 ff000e9cd6a459fe00f6f40b8484f9bf 595 PANTHER PTHR34597 93 594 1.9E-62 T 23-04-2016 NIDE_RS08925 ff000e9cd6a459fe00f6f40b8484f9bf 595 Pfam PF01103 Surface antigen 428 554 6.7E-6 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 NIDE_RS08925 ff000e9cd6a459fe00f6f40b8484f9bf 595 Pfam PF08479 POTRA domain, ShlB-type 97 170 1.6E-20 T 23-04-2016 IPR013686 Polypeptide-transport-associated, ShlB-type NIDE_RS08925 ff000e9cd6a459fe00f6f40b8484f9bf 595 Gene3D G3DSA:3.10.20.310 95 170 2.0E-20 T 23-04-2016 NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 SUPERFAMILY SSF52096 24 271 1.31E-87 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 277 38.614 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 Gene3D G3DSA:3.90.226.10 18 274 4.5E-79 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 PANTHER PTHR22855:SF17 1 275 1.1E-152 T 23-04-2016 NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 3 275 1.6E-125 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 250 259 1.51E-40 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 199 216 1.51E-40 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 162 180 1.51E-40 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 228 239 1.51E-40 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 128 142 1.51E-40 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 PANTHER PTHR22855 1 275 1.1E-152 T 23-04-2016 NIDE_RS07265 0a49b0eb1b0879858bc09523ea13772f 278 Pfam PF01039 Carboxyl transferase domain 59 239 7.0E-23 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS19065 ae73069791a7ca43b9fcb0e54b7ff373 298 Pfam PF03781 Sulfatase-modifying factor enzyme 1 42 284 5.3E-57 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS19065 ae73069791a7ca43b9fcb0e54b7ff373 298 PANTHER PTHR23150 40 286 1.6E-67 T 23-04-2016 NIDE_RS19065 ae73069791a7ca43b9fcb0e54b7ff373 298 Gene3D G3DSA:3.90.1580.10 40 288 5.3E-69 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS19065 ae73069791a7ca43b9fcb0e54b7ff373 298 SUPERFAMILY SSF56436 42 286 2.69E-70 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 PIRSF PIRSF004692 1 317 4.9E-132 T 23-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 Gene3D G3DSA:3.40.50.10490 5 187 5.3E-53 T 23-04-2016 NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 PANTHER PTHR38418 1 190 2.0E-41 T 23-04-2016 NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 SUPERFAMILY SSF53697 3 313 3.56E-66 T 23-04-2016 NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 Gene3D G3DSA:3.10.580.10 188 313 7.4E-35 T 23-04-2016 NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 38 307 1.7E-105 T 23-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 PANTHER PTHR38418:SF1 1 190 2.0E-41 T 23-04-2016 NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 Pfam PF00571 CBS domain 261 313 3.8E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 SMART SM00116 268 316 0.1 T 23-04-2016 IPR000644 CBS domain NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 SMART SM00116 203 251 7.1 T 23-04-2016 IPR000644 CBS domain NIDE_RS11735 be63c9389d5cfa5b5e5e73b1f7f3566b 317 Pfam PF01380 SIS domain 35 165 1.5E-30 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 NIDE_RS16410 c74f7edd27ee1eabd2367ea9153ad55c 144 Pfam PF00072 Response regulator receiver domain 19 132 1.4E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS16410 c74f7edd27ee1eabd2367ea9153ad55c 144 SUPERFAMILY SSF52172 17 141 1.85E-39 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS16410 c74f7edd27ee1eabd2367ea9153ad55c 144 SMART SM00448 17 132 2.2E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS16410 c74f7edd27ee1eabd2367ea9153ad55c 144 Gene3D G3DSA:3.40.50.2300 18 141 2.4E-38 T 23-04-2016 NIDE_RS16410 c74f7edd27ee1eabd2367ea9153ad55c 144 PANTHER PTHR26402 17 141 6.4E-37 T 23-04-2016 NIDE_RS10685 138e617018301b2753feb59b28b0beca 541 Pfam PF02310 B12 binding domain 24 135 2.3E-22 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS10685 138e617018301b2753feb59b28b0beca 541 SUPERFAMILY SSF102114 165 399 8.5E-40 T 23-04-2016 NIDE_RS10685 138e617018301b2753feb59b28b0beca 541 Gene3D G3DSA:3.80.30.20 199 390 1.9E-41 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS10685 138e617018301b2753feb59b28b0beca 541 Gene3D G3DSA:3.40.50.280 34 114 2.0E-4 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS10685 138e617018301b2753feb59b28b0beca 541 PANTHER PTHR11918 20 386 3.2E-82 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS10685 138e617018301b2753feb59b28b0beca 541 SMART SM00729 197 402 1.2E-35 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS10685 138e617018301b2753feb59b28b0beca 541 Pfam PF04055 Radical SAM superfamily 202 364 7.7E-25 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS10685 138e617018301b2753feb59b28b0beca 541 SUPERFAMILY SSF52242 33 116 5.3E-8 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS10685 138e617018301b2753feb59b28b0beca 541 PANTHER PTHR11918:SF64 20 386 3.2E-82 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 PANTHER PTHR20856:SF20 1063 1319 0.0 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 PANTHER PTHR20856:SF20 11 236 0.0 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 PANTHER PTHR20856:SF20 752 939 0.0 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 PANTHER PTHR20856:SF20 348 733 0.0 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1092 1104 - T 23-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:2.40.50.100 723 801 1.1E-29 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 SUPERFAMILY SSF64484 351 948 0.0 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 SUPERFAMILY SSF64484 12 232 0.0 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 SUPERFAMILY SSF64484 1068 1318 0.0 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Pfam PF04560 RNA polymerase Rpb2, domain 7 1241 1315 4.7E-24 T 23-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Pfam PF04563 RNA polymerase beta subunit 27 506 1.5E-29 T 23-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 11 1314 0.0 T 23-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Pfam PF00562 RNA polymerase Rpb2, domain 6 726 1239 8.3E-170 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1317 12.567 T 23-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:3.90.1100.10 453 599 1.0E-148 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:3.90.1100.10 667 721 1.0E-148 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:3.90.1100.10 20 157 1.0E-148 T 23-04-2016 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:3.90.1110.10 354 452 4.2E-67 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:3.90.1110.10 159 236 4.2E-67 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Pfam PF04561 RNA polymerase Rpb2, domain 2 176 226 7.4E-6 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Pfam PF04561 RNA polymerase Rpb2, domain 2 346 462 4.2E-25 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Pfam PF04565 RNA polymerase Rpb2, domain 3 521 589 1.6E-30 T 23-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Pfam PF10385 RNA polymerase beta subunit external 1 domain 599 664 1.4E-23 T 23-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 PANTHER PTHR20856 1063 1319 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 PANTHER PTHR20856 11 236 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 PANTHER PTHR20856 752 939 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 PANTHER PTHR20856 348 733 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:2.40.50.150 1074 1088 1.2E-59 T 23-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:2.40.50.150 837 946 1.2E-59 T 23-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:2.30.150.10 600 664 5.9E-25 T 23-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:2.40.270.10 1089 1217 2.0E-79 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06035 08ca4d862fb37443ede8245e19ca362a 1319 Gene3D G3DSA:2.40.270.10 802 829 2.0E-79 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS12860 24c3b5ec519d85d50e0d397207eb4de4 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 2.9E-16 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS12860 24c3b5ec519d85d50e0d397207eb4de4 300 Pfam PF03466 LysR substrate binding domain 95 294 4.1E-21 T 23-04-2016 IPR005119 LysR, substrate-binding NIDE_RS12860 24c3b5ec519d85d50e0d397207eb4de4 300 Gene3D G3DSA:3.40.190.10 91 170 2.2E-20 T 23-04-2016 NIDE_RS12860 24c3b5ec519d85d50e0d397207eb4de4 300 Gene3D G3DSA:3.40.190.10 269 296 2.2E-20 T 23-04-2016 NIDE_RS12860 24c3b5ec519d85d50e0d397207eb4de4 300 PANTHER PTHR30118:SF5 1 299 4.3E-90 T 23-04-2016 NIDE_RS12860 24c3b5ec519d85d50e0d397207eb4de4 300 Gene3D G3DSA:3.40.190.10 171 264 4.7E-23 T 23-04-2016 NIDE_RS12860 24c3b5ec519d85d50e0d397207eb4de4 300 PANTHER PTHR30118 1 299 4.3E-90 T 23-04-2016 NIDE_RS12860 24c3b5ec519d85d50e0d397207eb4de4 300 SUPERFAMILY SSF53850 93 293 2.53E-32 T 23-04-2016 NIDE_RS12860 24c3b5ec519d85d50e0d397207eb4de4 300 SUPERFAMILY SSF46785 2 81 3.26E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS12860 24c3b5ec519d85d50e0d397207eb4de4 300 Gene3D G3DSA:1.10.10.10 1 84 3.2E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16135 80db165e43f39585e3a3cd06ad8edf00 830 Pfam PF07715 TonB-dependent Receptor Plug Domain 189 298 9.1E-22 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS16135 80db165e43f39585e3a3cd06ad8edf00 830 SUPERFAMILY SSF56935 186 830 9.16E-104 T 23-04-2016 NIDE_RS16135 80db165e43f39585e3a3cd06ad8edf00 830 Pfam PF07660 Secretin and TonB N terminus short domain 83 132 2.9E-9 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 NIDE_RS16135 80db165e43f39585e3a3cd06ad8edf00 830 Gene3D G3DSA:2.170.130.10 167 299 7.1E-28 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS16135 80db165e43f39585e3a3cd06ad8edf00 830 Pfam PF00593 TonB dependent receptor 586 829 5.5E-24 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS16135 80db165e43f39585e3a3cd06ad8edf00 830 SMART SM00965 82 133 7.1E-13 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 NIDE_RS16135 80db165e43f39585e3a3cd06ad8edf00 830 PANTHER PTHR32552 185 830 3.8E-46 T 23-04-2016 NIDE_RS16135 80db165e43f39585e3a3cd06ad8edf00 830 Gene3D G3DSA:2.40.170.20 300 830 2.7E-86 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 SUPERFAMILY SSF56784 331 351 2.69E-61 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 SUPERFAMILY SSF56784 489 741 2.69E-61 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 SUPERFAMILY SSF81660 340 538 6.98E-58 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 Pfam PF00690 Cation transporter/ATPase, N-terminus 12 80 2.2E-18 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 Pfam PF00702 haloacid dehalogenase-like hydrolase 331 650 1.7E-20 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 556 566 5.7E-37 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 660 672 5.7E-37 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 333 347 5.7E-37 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 636 655 5.7E-37 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 170 184 5.7E-37 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 534 545 5.7E-37 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 Pfam PF00122 E1-E2 ATPase 91 324 2.0E-64 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 Gene3D G3DSA:1.20.1110.10 65 117 1.3E-121 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 Gene3D G3DSA:1.20.1110.10 605 895 1.3E-121 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 Pfam PF00689 Cation transporting ATPase, C-terminus 720 892 1.2E-50 T 23-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 335 341 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PANTHER PTHR24093 12 904 0.0 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 Gene3D G3DSA:3.40.1110.10 323 541 7.4E-65 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 SUPERFAMILY SSF81665 234 327 4.32E-134 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 SUPERFAMILY SSF81665 686 897 4.32E-134 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 SUPERFAMILY SSF81665 11 123 4.32E-134 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 636 652 1.7E-14 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 668 693 1.7E-14 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 492 510 1.7E-14 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 608 624 1.7E-14 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 SUPERFAMILY SSF81653 124 233 1.01E-27 T 23-04-2016 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 Gene3D G3DSA:2.70.150.10 22 64 3.7E-39 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 Gene3D G3DSA:2.70.150.10 118 233 3.7E-39 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 227 353 5.5E-26 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 607 726 1.2E-30 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS17115 3ce715d82f473a54a4fb9eb957ff78cf 904 SMART SM00831 11 85 3.3E-24 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 10 123 2.1E-28 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 SUPERFAMILY SSF55347 134 325 7.45E-72 T 23-04-2016 NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 SMART SM00859 9 125 1.9E-29 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 Gene3D G3DSA:3.40.50.720 5 147 9.1E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 10 338 6.1E-127 T 23-04-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 SUPERFAMILY SSF51735 8 162 3.52E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 PANTHER PTHR10174:SF2 60 339 2.4E-66 T 23-04-2016 NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 7 338 34.539 T 23-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 Gene3D G3DSA:3.30.360.10 148 320 5.7E-76 T 23-04-2016 NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 PIRSF PIRSF000148 7 339 5.5E-122 T 23-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 PANTHER PTHR10174 60 339 2.4E-66 T 23-04-2016 NIDE_RS04635 4209b2d7c619244353c43df8e52a8104 339 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 324 4.1E-54 T 23-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS17040 430a2c74105940bfeb94d9293ebb3113 451 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 59 82 - T 23-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 NIDE_RS17040 430a2c74105940bfeb94d9293ebb3113 451 SUPERFAMILY SSF63411 23 239 1.31E-61 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS17040 430a2c74105940bfeb94d9293ebb3113 451 Gene3D G3DSA:3.30.830.10 252 430 7.5E-35 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS17040 430a2c74105940bfeb94d9293ebb3113 451 SUPERFAMILY SSF63411 254 439 2.23E-40 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS17040 430a2c74105940bfeb94d9293ebb3113 451 PANTHER PTHR11851 17 439 7.3E-125 T 23-04-2016 NIDE_RS17040 430a2c74105940bfeb94d9293ebb3113 451 Pfam PF05193 Peptidase M16 inactive domain 193 370 4.0E-36 T 23-04-2016 IPR007863 Peptidase M16, C-terminal NIDE_RS17040 430a2c74105940bfeb94d9293ebb3113 451 Gene3D G3DSA:3.30.830.10 21 243 3.1E-58 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS17040 430a2c74105940bfeb94d9293ebb3113 451 PANTHER PTHR11851:SF136 17 439 7.3E-125 T 23-04-2016 NIDE_RS17040 430a2c74105940bfeb94d9293ebb3113 451 Pfam PF00675 Insulinase (Peptidase family M16) 38 179 8.4E-28 T 23-04-2016 IPR011765 Peptidase M16, N-terminal NIDE_RS04620 f327051e3ae7efa9a2b57a0586ca9dc3 120 Pfam PF07883 Cupin domain 41 106 1.0E-12 T 23-04-2016 IPR013096 Cupin 2, conserved barrel NIDE_RS04620 f327051e3ae7efa9a2b57a0586ca9dc3 120 PANTHER PTHR36114 20 118 3.1E-12 T 23-04-2016 NIDE_RS04620 f327051e3ae7efa9a2b57a0586ca9dc3 120 PANTHER PTHR36114:SF1 20 118 3.1E-12 T 23-04-2016 NIDE_RS04620 f327051e3ae7efa9a2b57a0586ca9dc3 120 SUPERFAMILY SSF51182 21 117 8.35E-23 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS04620 f327051e3ae7efa9a2b57a0586ca9dc3 120 Gene3D G3DSA:2.60.120.10 19 115 1.2E-21 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS11280 bc5295afdf35641cb8ac7710980e990a 292 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 292 1.5E-82 T 23-04-2016 IPR005229 Conserved hypothetical protein CHP00255 NIDE_RS11280 bc5295afdf35641cb8ac7710980e990a 292 Pfam PF03755 YicC-like family, N-terminal region 2 156 7.3E-44 T 23-04-2016 IPR013527 YicC-like, N-terminal NIDE_RS11280 bc5295afdf35641cb8ac7710980e990a 292 Pfam PF08340 Domain of unknown function (DUF1732) 208 292 3.5E-35 T 23-04-2016 IPR013551 Domain of unknown function DUF1732 NIDE_RS11280 bc5295afdf35641cb8ac7710980e990a 292 PANTHER PTHR30636 1 292 1.2E-92 T 23-04-2016 NIDE_RS16600 f4f22aa6fa468d4f06ec20f28a3f0709 130 Pfam PF01253 Translation initiation factor SUI1 53 123 5.8E-16 T 23-04-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 NIDE_RS16600 f4f22aa6fa468d4f06ec20f28a3f0709 130 Gene3D G3DSA:3.30.780.10 50 130 1.3E-26 T 23-04-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 NIDE_RS16600 f4f22aa6fa468d4f06ec20f28a3f0709 130 SUPERFAMILY SSF55159 48 125 2.88E-20 T 23-04-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 NIDE_RS16600 f4f22aa6fa468d4f06ec20f28a3f0709 130 PANTHER PTHR12789 33 124 5.8E-14 T 23-04-2016 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 Gene3D G3DSA:3.40.1160.10 6 265 6.3E-59 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 ProSitePatterns PS00902 Glutamate 5-kinase signature. 212 229 - T 23-04-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 PANTHER PTHR11063:SF12 2 373 2.4E-115 T 23-04-2016 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 PIRSF PIRSF000729 5 373 1.6E-133 T 23-04-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 Gene3D G3DSA:2.30.130.10 279 371 1.4E-24 T 23-04-2016 IPR015947 PUA-like domain NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 SMART SM00359 282 365 4.1E-12 T 23-04-2016 IPR002478 PUA domain GO:0003723 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 PANTHER PTHR11063 2 373 2.4E-115 T 23-04-2016 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 SUPERFAMILY SSF53633 10 260 1.15E-65 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 Hamap MF_00456 Glutamate 5-kinase [proB]. 10 263 36.539 T 23-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 TIGRFAM TIGR01027 proB: glutamate 5-kinase 10 372 1.6E-132 T 23-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 PRINTS PR00474 Glutamate 5-kinase family signature 153 180 1.5E-50 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 PRINTS PR00474 Glutamate 5-kinase family signature 47 61 1.5E-50 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 PRINTS PR00474 Glutamate 5-kinase family signature 81 109 1.5E-50 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 PRINTS PR00474 Glutamate 5-kinase family signature 214 234 1.5E-50 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 PRINTS PR00474 Glutamate 5-kinase family signature 121 142 1.5E-50 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 Pfam PF00696 Amino acid kinase family 10 239 2.0E-41 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 Pfam PF01472 PUA domain 282 355 3.3E-19 T 23-04-2016 IPR002478 PUA domain GO:0003723 NIDE_RS05070 f2698ea8412c9173387df3d0a7e0cfd0 373 SUPERFAMILY SSF88697 282 372 9.94E-21 T 23-04-2016 IPR015947 PUA-like domain NIDE_RS10825 2d1efa8f4fd78ff124eecaa5eead917e 331 PANTHER PTHR32089 84 281 5.9E-34 T 23-04-2016 NIDE_RS10825 2d1efa8f4fd78ff124eecaa5eead917e 331 PANTHER PTHR32089:SF1 84 281 5.9E-34 T 23-04-2016 NIDE_RS10825 2d1efa8f4fd78ff124eecaa5eead917e 331 SUPERFAMILY SSF58104 29 272 5.89E-39 T 23-04-2016 NIDE_RS10825 2d1efa8f4fd78ff124eecaa5eead917e 331 SMART SM00283 29 264 1.5E-10 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 NIDE_RS10825 2d1efa8f4fd78ff124eecaa5eead917e 331 Gene3D G3DSA:1.10.287.950 38 244 1.2E-36 T 23-04-2016 NIDE_RS10825 2d1efa8f4fd78ff124eecaa5eead917e 331 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 94 259 2.1E-32 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 Gene3D G3DSA:3.40.220.10 8 163 9.3E-34 T 23-04-2016 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 32 150 1.2E-28 T 23-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 Gene3D G3DSA:3.40.630.10 184 502 8.1E-136 T 23-04-2016 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 SUPERFAMILY SSF52949 13 187 3.88E-35 T 23-04-2016 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 SUPERFAMILY SSF53187 184 503 8.16E-120 T 23-04-2016 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 190 497 6.5E-122 T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 PRINTS PR00481 Cytosol aminopeptidase signature 268 285 2.5E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 PRINTS PR00481 Cytosol aminopeptidase signature 290 311 2.5E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 PRINTS PR00481 Cytosol aminopeptidase signature 377 392 2.5E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 PRINTS PR00481 Cytosol aminopeptidase signature 327 348 2.5E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 PRINTS PR00481 Cytosol aminopeptidase signature 349 369 2.5E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 PANTHER PTHR11963:SF13 37 504 3.9E-192 T 23-04-2016 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 353 360 - T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 PANTHER PTHR11963 37 504 3.9E-192 T 23-04-2016 NIDE_RS01125 cc40a339e7d8d0a4c1c69b0a96827972 506 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 6 505 37.1 T 23-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 NIDE_RS12720 202641acd86a23829d7fba10a0494efd 147 Gene3D G3DSA:3.10.490.10 3 146 7.1E-37 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like NIDE_RS12720 202641acd86a23829d7fba10a0494efd 147 Pfam PF13772 AIG2-like family 58 136 7.7E-13 T 23-04-2016 NIDE_RS12720 202641acd86a23829d7fba10a0494efd 147 PANTHER PTHR12935 4 136 9.2E-22 T 23-04-2016 IPR017939 Gamma-glutamylcyclotransferase GO:0003839|GO:0006750 KEGG: 00480+2.3.2.4|MetaCyc: PWY-4041 NIDE_RS12720 202641acd86a23829d7fba10a0494efd 147 SUPERFAMILY SSF110857 4 127 5.49E-13 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like NIDE_RS16230 e4034967927c0bf52242bcd456e63bd9 361 Gene3D G3DSA:1.10.150.130 59 154 2.0E-9 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal NIDE_RS16230 e4034967927c0bf52242bcd456e63bd9 361 Pfam PF00589 Phage integrase family 165 323 1.6E-35 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS16230 e4034967927c0bf52242bcd456e63bd9 361 PANTHER PTHR30349:SF20 59 352 2.4E-54 T 23-04-2016 NIDE_RS16230 e4034967927c0bf52242bcd456e63bd9 361 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 59 109 5.1E-5 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 NIDE_RS16230 e4034967927c0bf52242bcd456e63bd9 361 SUPERFAMILY SSF56349 59 329 2.35E-69 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS16230 e4034967927c0bf52242bcd456e63bd9 361 PANTHER PTHR30349 59 352 2.4E-54 T 23-04-2016 NIDE_RS16230 e4034967927c0bf52242bcd456e63bd9 361 Gene3D G3DSA:1.10.443.10 164 329 2.0E-46 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS04565 330c2fbb10b913ad1cac4f7eb52d0f04 219 PANTHER PTHR10954:SF12 6 216 2.3E-45 T 23-04-2016 NIDE_RS04565 330c2fbb10b913ad1cac4f7eb52d0f04 219 TIGRFAM TIGR00716 rnhC: ribonuclease HIII 11 211 1.3E-57 T 23-04-2016 IPR004641 Ribonuclease HIII GO:0004523|GO:0005737|GO:0016070 NIDE_RS04565 330c2fbb10b913ad1cac4f7eb52d0f04 219 PANTHER PTHR10954 6 216 2.3E-45 T 23-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 NIDE_RS04565 330c2fbb10b913ad1cac4f7eb52d0f04 219 Pfam PF01351 Ribonuclease HII 13 212 1.5E-30 T 23-04-2016 IPR024567 Ribonuclease HII/HIII domain NIDE_RS04565 330c2fbb10b913ad1cac4f7eb52d0f04 219 Gene3D G3DSA:3.30.420.10 13 170 1.5E-31 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS04565 330c2fbb10b913ad1cac4f7eb52d0f04 219 SUPERFAMILY SSF53098 12 217 8.95E-41 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 SUPERFAMILY SSF53335 75 270 4.89E-61 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 Gene3D G3DSA:1.10.155.10 3 72 9.0E-22 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 SMART SM00138 7 271 1.7E-112 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 SUPERFAMILY SSF47757 3 74 2.35E-18 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 PIRSF PIRSF000410 1 272 6.0E-108 T 23-04-2016 IPR026024 Chemotaxis protein methyltransferase CheR NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 PRINTS PR00996 Glutamate methyltransferase family signature 104 124 8.9E-47 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 PRINTS PR00996 Glutamate methyltransferase family signature 139 155 8.9E-47 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 PRINTS PR00996 Glutamate methyltransferase family signature 211 225 8.9E-47 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 PRINTS PR00996 Glutamate methyltransferase family signature 29 42 8.9E-47 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 PRINTS PR00996 Glutamate methyltransferase family signature 68 80 8.9E-47 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 PRINTS PR00996 Glutamate methyltransferase family signature 230 253 8.9E-47 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 Gene3D G3DSA:3.40.50.150 74 269 2.6E-76 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 PANTHER PTHR24422 4 268 3.6E-92 T 23-04-2016 NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 PANTHER PTHR24422:SF13 4 268 3.6E-92 T 23-04-2016 NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 Pfam PF03705 CheR methyltransferase, all-alpha domain 8 59 3.9E-16 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal NIDE_RS10855 9dedc5349797335ad9abf08106939128 272 Pfam PF01739 CheR methyltransferase, SAM binding domain 75 264 7.0E-65 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 PANTHER PTHR22572 5 386 2.4E-155 T 23-04-2016 NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 PANTHER PTHR22572:SF10 5 386 2.4E-155 T 23-04-2016 NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 Gene3D G3DSA:3.90.550.10 7 279 3.3E-79 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 Gene3D G3DSA:3.90.550.10 325 368 3.3E-79 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 SUPERFAMILY SSF51161 292 401 4.85E-19 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 Pfam PF00483 Nucleotidyl transferase 7 268 8.3E-64 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 1 404 48.521 T 23-04-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 5 378 1.6E-143 T 23-04-2016 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 SUPERFAMILY SSF53448 342 358 8.92E-75 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 SUPERFAMILY SSF53448 3 272 8.92E-75 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS08245 2a2d5f0b62ab2ad9ff724da429c8a3f3 412 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 96 104 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 NIDE_RS00490 ce8e4e67b0f3fe8d948b98170597d4c8 404 SUPERFAMILY SSF52096 204 264 2.34E-30 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS00490 ce8e4e67b0f3fe8d948b98170597d4c8 404 SUPERFAMILY SSF52096 53 173 2.34E-30 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS00490 ce8e4e67b0f3fe8d948b98170597d4c8 404 PANTHER PTHR33209 58 271 1.1E-44 T 23-04-2016 NIDE_RS00490 ce8e4e67b0f3fe8d948b98170597d4c8 404 Pfam PF01343 Peptidase family S49 127 269 1.2E-31 T 23-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 NIDE_RS00490 ce8e4e67b0f3fe8d948b98170597d4c8 404 Gene3D G3DSA:3.90.226.10 203 271 4.9E-33 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS00490 ce8e4e67b0f3fe8d948b98170597d4c8 404 Gene3D G3DSA:3.90.226.10 37 162 4.9E-33 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS19420 385a4b38c37f9acb078f2815a5a74736 394 Pfam PF07642 Putative beta-barrel porin-2, OmpL-like. bbp2 48 364 1.5E-60 T 23-04-2016 IPR011486 Putative beta-barrel porin-2, OmpL-like. bbp2 NIDE_RS19420 385a4b38c37f9acb078f2815a5a74736 394 SUPERFAMILY SSF56935 86 391 1.19E-5 T 23-04-2016 NIDE_RS03540 f96bc67fa7bed3328f173bb87d305be4 98 PANTHER PTHR33219 1 97 1.1E-22 T 23-04-2016 NIDE_RS03540 f96bc67fa7bed3328f173bb87d305be4 98 Pfam PF02325 YGGT family 17 84 6.6E-23 T 23-04-2016 IPR003425 CCB3/YggT GO:0016020 NIDE_RS03540 f96bc67fa7bed3328f173bb87d305be4 98 PANTHER PTHR33219:SF5 1 97 1.1E-22 T 23-04-2016 NIDE_RS04105 8473651479b1796bab3301397989e9fd 338 Pfam PF11946 Domain of unknown function (DUF3463) 195 324 2.9E-62 T 23-04-2016 IPR022563 Domain of unknown function DUF3463 NIDE_RS04105 8473651479b1796bab3301397989e9fd 338 TIGRFAM TIGR03470 HpnH: hopanoid biosynthesis associated radical SAM protein HpnH 1 317 1.7E-165 T 23-04-2016 IPR017833 Hopanoid biosynthesis associated radical SAM protein HpnH NIDE_RS04105 8473651479b1796bab3301397989e9fd 338 Pfam PF04055 Radical SAM superfamily 34 185 1.8E-12 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS04105 8473651479b1796bab3301397989e9fd 338 SUPERFAMILY SSF102114 23 306 3.92E-49 T 23-04-2016 NIDE_RS04105 8473651479b1796bab3301397989e9fd 338 PANTHER PTHR11228 24 318 9.4E-91 T 23-04-2016 NIDE_RS04105 8473651479b1796bab3301397989e9fd 338 Pfam PF13394 4Fe-4S single cluster domain 37 127 5.9E-5 T 23-04-2016 NIDE_RS04105 8473651479b1796bab3301397989e9fd 338 Gene3D G3DSA:3.20.20.70 22 308 5.8E-38 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS04105 8473651479b1796bab3301397989e9fd 338 PANTHER PTHR11228:SF22 24 318 9.4E-91 T 23-04-2016 NIDE_RS03025 38a75b4d63675a49863f857a0a45cf29 86 SUPERFAMILY SSF47598 4 48 1.56E-7 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 NIDE_RS03025 38a75b4d63675a49863f857a0a45cf29 86 Gene3D G3DSA:1.10.1220.10 7 41 1.2E-4 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 NIDE_RS16365 ce4248767c67c6d638bc993e1ea442b4 383 PANTHER PTHR11241:SF1 84 176 2.6E-24 T 23-04-2016 NIDE_RS16365 ce4248767c67c6d638bc993e1ea442b4 383 PANTHER PTHR11241:SF1 2 63 2.6E-24 T 23-04-2016 NIDE_RS16365 ce4248767c67c6d638bc993e1ea442b4 383 SUPERFAMILY SSF51283 9 179 1.57E-23 T 23-04-2016 IPR029054 dUTPase-like NIDE_RS16365 ce4248767c67c6d638bc993e1ea442b4 383 Pfam PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 8 382 1.6E-154 T 23-04-2016 IPR010550 Deoxycytidine triphosphate deaminase, bacterial GO:0008829|GO:0009394 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 NIDE_RS16365 ce4248767c67c6d638bc993e1ea442b4 383 Gene3D G3DSA:2.70.40.10 9 176 3.7E-49 T 23-04-2016 IPR029054 dUTPase-like NIDE_RS16365 ce4248767c67c6d638bc993e1ea442b4 383 Gene3D G3DSA:2.70.40.10 179 358 8.0E-52 T 23-04-2016 IPR029054 dUTPase-like NIDE_RS16365 ce4248767c67c6d638bc993e1ea442b4 383 PANTHER PTHR11241 2 63 2.6E-24 T 23-04-2016 NIDE_RS16365 ce4248767c67c6d638bc993e1ea442b4 383 PANTHER PTHR11241 84 176 2.6E-24 T 23-04-2016 NIDE_RS16365 ce4248767c67c6d638bc993e1ea442b4 383 SUPERFAMILY SSF51283 253 382 2.62E-15 T 23-04-2016 IPR029054 dUTPase-like NIDE_RS09155 9141c3cac298715acf34351d7eabb26f 87 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 7 86 1.2E-28 T 23-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 NIDE_RS09155 9141c3cac298715acf34351d7eabb26f 87 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 85 8.9E-8 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NIDE_RS09155 9141c3cac298715acf34351d7eabb26f 87 SUPERFAMILY SSF143011 3 87 9.29E-19 T 23-04-2016 NIDE_RS09155 9141c3cac298715acf34351d7eabb26f 87 PANTHER PTHR38039 3 87 1.2E-13 T 23-04-2016 NIDE_RS09155 9141c3cac298715acf34351d7eabb26f 87 PANTHER PTHR38039:SF1 3 87 1.2E-13 T 23-04-2016 NIDE_RS09155 9141c3cac298715acf34351d7eabb26f 87 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 24 86 9.6E-11 T 23-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 PANTHER PTHR32071 7 450 1.1E-199 T 23-04-2016 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 SMART SM00448 5 116 1.0E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 SMART SM00382 165 312 7.5E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 SUPERFAMILY SSF46689 358 450 2.87E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 SUPERFAMILY SSF52172 3 189 1.11E-47 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 Pfam PF00072 Response regulator receiver domain 7 112 5.6E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 Gene3D G3DSA:1.10.8.60 318 394 1.8E-25 T 23-04-2016 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 Gene3D G3DSA:1.10.10.60 397 450 2.4E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 Pfam PF00158 Sigma-54 interaction domain 145 312 1.4E-69 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 169 182 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 SUPERFAMILY SSF52540 145 389 1.92E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 231 246 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 Gene3D G3DSA:3.40.50.2300 4 131 2.0E-39 T 23-04-2016 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 Pfam PF02954 Bacterial regulatory protein, Fis family 408 448 5.3E-12 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 Gene3D G3DSA:3.40.50.300 141 317 1.9E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 414 431 2.1E-8 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS19470 3df6f75f3b7a4d3f7f3b54c26f70535e 452 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 431 451 2.1E-8 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS18160 93d8fe0ef12e9e1fda810832f3847362 389 Gene3D G3DSA:3.30.565.10 274 383 7.9E-11 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS18160 93d8fe0ef12e9e1fda810832f3847362 389 PANTHER PTHR24421 80 384 9.3E-45 T 23-04-2016 NIDE_RS18160 93d8fe0ef12e9e1fda810832f3847362 389 SUPERFAMILY SSF55874 253 383 8.77E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS18160 93d8fe0ef12e9e1fda810832f3847362 389 Pfam PF07730 Histidine kinase 185 251 9.9E-12 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NIDE_RS18160 93d8fe0ef12e9e1fda810832f3847362 389 PANTHER PTHR24421:SF23 80 384 9.3E-45 T 23-04-2016 NIDE_RS18160 93d8fe0ef12e9e1fda810832f3847362 389 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 296 383 4.0E-10 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS18160 93d8fe0ef12e9e1fda810832f3847362 389 SMART SM00387 290 385 2.5E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 Pfam PF00072 Response regulator receiver domain 7 116 5.7E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 Gene3D G3DSA:1.10.10.10 155 212 5.5E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 Gene3D G3DSA:3.40.50.2300 3 154 2.4E-37 T 23-04-2016 NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 SMART SM00421 149 206 2.3E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 SMART SM00448 5 116 4.1E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 PANTHER PTHR26402 5 211 1.7E-62 T 23-04-2016 NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 SUPERFAMILY SSF52172 4 131 8.82E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 6.9E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 6.9E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 6.9E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 PANTHER PTHR26402:SF583 5 211 1.7E-62 T 23-04-2016 NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 SUPERFAMILY SSF46894 141 212 1.7E-20 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS14840 b1b05fc66507164532bd1acf41c08aaf 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 5.6E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS11320 0774114991c743fe408cf682e547479c 449 PANTHER PTHR18866 1 445 1.3E-285 T 23-04-2016 NIDE_RS11320 0774114991c743fe408cf682e547479c 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NIDE_RS11320 0774114991c743fe408cf682e547479c 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 442 1.3E-40 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal NIDE_RS11320 0774114991c743fe408cf682e547479c 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 1.0E-77 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NIDE_RS11320 0774114991c743fe408cf682e547479c 449 SUPERFAMILY SSF52440 1 113 1.44E-46 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS11320 0774114991c743fe408cf682e547479c 449 SUPERFAMILY SSF51246 331 444 7.32E-43 T 23-04-2016 IPR011054 Rudiment single hybrid motif NIDE_RS11320 0774114991c743fe408cf682e547479c 449 Gene3D G3DSA:3.30.470.20 205 443 3.5E-99 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS11320 0774114991c743fe408cf682e547479c 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 NIDE_RS11320 0774114991c743fe408cf682e547479c 449 Gene3D G3DSA:3.40.50.20 2 129 6.6E-48 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS11320 0774114991c743fe408cf682e547479c 449 SMART SM00878 336 441 6.3E-65 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal NIDE_RS11320 0774114991c743fe408cf682e547479c 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 110 3.8E-44 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain NIDE_RS11320 0774114991c743fe408cf682e547479c 449 SUPERFAMILY SSF56059 83 346 8.08E-72 T 23-04-2016 NIDE_RS11320 0774114991c743fe408cf682e547479c 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 2 444 5.7E-214 T 23-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 NIDE_RS11320 0774114991c743fe408cf682e547479c 449 Gene3D G3DSA:3.30.1490.20 130 202 9.0E-30 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 PANTHER PTHR22807 15 447 2.3E-111 T 23-04-2016 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 SUPERFAMILY SSF53335 135 446 8.83E-66 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 SUPERFAMILY SSF48013 2 149 1.07E-29 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 376 392 5.8E-23 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 223 237 5.8E-23 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 326 338 5.8E-23 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 252 262 5.8E-23 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 430 447 5.8E-23 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 325 336 - T 23-04-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 3 447 1.5E-101 T 23-04-2016 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 Gene3D G3DSA:3.40.50.150 234 447 5.3E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 Gene3D G3DSA:1.10.940.10 2 150 2.6E-37 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 Gene3D G3DSA:3.30.70.1170 174 231 1.8E-17 T 23-04-2016 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 PANTHER PTHR22807:SF30 15 447 2.3E-111 T 23-04-2016 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 Pfam PF01189 16S rRNA methyltransferase RsmB/F 241 445 2.9E-53 T 23-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS01820 4757bc0c0d145750fe47a6c440e780e7 449 Pfam PF01029 NusB family 15 122 1.4E-23 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 Pfam PF01168 Alanine racemase, N-terminal domain 14 232 7.6E-68 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 SUPERFAMILY SSF50621 241 374 6.98E-52 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 Gene3D G3DSA:3.20.20.10 16 226 4.3E-70 T 23-04-2016 IPR029066 PLP-binding barrel NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 TIGRFAM TIGR00492 alr: alanine racemase 10 374 9.6E-111 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 Hamap MF_01201 Alanine racemase. 7 374 34.163 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 Gene3D G3DSA:2.40.37.10 227 374 1.6E-59 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 37 47 - T 23-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PANTHER PTHR30511:SF0 5 381 5.3E-152 T 23-04-2016 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 Pfam PF00842 Alanine racemase, C-terminal domain 247 373 5.7E-43 T 23-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 SMART SM01005 246 374 1.5E-71 T 23-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 SUPERFAMILY SSF51419 14 242 7.85E-64 T 23-04-2016 IPR029066 PLP-binding barrel NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PANTHER PTHR30511 5 381 5.3E-152 T 23-04-2016 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PRINTS PR00992 Alanine racemase signature 32 48 5.2E-63 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PRINTS PR00992 Alanine racemase signature 206 233 5.2E-63 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PRINTS PR00992 Alanine racemase signature 356 369 5.2E-63 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PRINTS PR00992 Alanine racemase signature 279 294 5.2E-63 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PRINTS PR00992 Alanine racemase signature 262 277 5.2E-63 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PRINTS PR00992 Alanine racemase signature 300 317 5.2E-63 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PRINTS PR00992 Alanine racemase signature 129 141 5.2E-63 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PRINTS PR00992 Alanine racemase signature 163 174 5.2E-63 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS12680 fcc511fe17cf344a44b08b6df9d6f3bd 387 PRINTS PR00992 Alanine racemase signature 68 86 5.2E-63 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 NIDE_RS09445 b9e5c4f7e84f384fb247f2a23a0993d4 67 Gene3D G3DSA:3.30.1660.10 2 67 3.3E-24 T 23-04-2016 IPR025543 Dodecin-like NIDE_RS09445 b9e5c4f7e84f384fb247f2a23a0993d4 67 SUPERFAMILY SSF89807 1 65 3.01E-21 T 23-04-2016 IPR009923 Dodecin NIDE_RS09445 b9e5c4f7e84f384fb247f2a23a0993d4 67 Pfam PF07311 Dodecin 3 65 2.3E-25 T 23-04-2016 IPR009923 Dodecin NIDE_RS20320 69537c11a138c750cd012b701f2630d3 118 PANTHER PTHR26402:SF590 43 97 1.5E-15 T 23-04-2016 NIDE_RS20320 69537c11a138c750cd012b701f2630d3 118 Gene3D G3DSA:1.10.10.10 43 104 9.5E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS20320 69537c11a138c750cd012b701f2630d3 118 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 57 73 7.0E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20320 69537c11a138c750cd012b701f2630d3 118 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 43 57 7.0E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20320 69537c11a138c750cd012b701f2630d3 118 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 73 85 7.0E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20320 69537c11a138c750cd012b701f2630d3 118 SMART SM00421 40 97 8.7E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS20320 69537c11a138c750cd012b701f2630d3 118 PANTHER PTHR26402 43 97 1.5E-15 T 23-04-2016 NIDE_RS20320 69537c11a138c750cd012b701f2630d3 118 SUPERFAMILY SSF46894 29 104 3.3E-21 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS20320 69537c11a138c750cd012b701f2630d3 118 Pfam PF00196 Bacterial regulatory proteins, luxR family 43 95 3.0E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14250 226dcd3276d9e95af104c5c422eb9895 371 PANTHER PTHR11056 99 368 1.7E-55 T 23-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 NIDE_RS14250 226dcd3276d9e95af104c5c422eb9895 371 SUPERFAMILY SSF51182 20 369 7.26E-79 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS14250 226dcd3276d9e95af104c5c422eb9895 371 Pfam PF04209 homogentisate 1,2-dioxygenase 98 368 2.3E-25 T 23-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 NIDE_RS14250 226dcd3276d9e95af104c5c422eb9895 371 Gene3D G3DSA:2.60.120.10 76 161 2.6E-10 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS14250 226dcd3276d9e95af104c5c422eb9895 371 Gene3D G3DSA:2.60.120.10 213 347 1.4E-25 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 Gene3D G3DSA:3.30.230.10 603 783 4.9E-75 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 Gene3D G3DSA:3.40.50.300 318 512 6.5E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 21 213 4.5E-37 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 Hamap MF_01973 Lon protease [lon]. 21 784 71.872 T 23-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 SMART SM00464 20 214 1.3E-66 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 688 696 - T 23-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 SUPERFAMILY SSF52540 314 572 5.18E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 582 784 1.5E-94 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 PANTHER PTHR10046 7 788 0.0 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 SUPERFAMILY SSF88697 20 212 1.86E-44 T 23-04-2016 IPR015947 PUA-like domain NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 607 623 1.2E-53 T 23-04-2016 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 715 734 1.2E-53 T 23-04-2016 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 738 756 1.2E-53 T 23-04-2016 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 685 704 1.2E-53 T 23-04-2016 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 368 387 1.2E-53 T 23-04-2016 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 PANTHER PTHR10046:SF24 7 788 0.0 T 23-04-2016 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 PIRSF PIRSF001174 6 787 0.0 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 Gene3D G3DSA:1.10.8.60 513 596 2.4E-32 T 23-04-2016 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 SMART SM00382 360 505 1.5E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 TIGRFAM TIGR00763 lon: endopeptidase La 22 783 7.4E-304 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 364 500 6.2E-21 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS13955 0e594a93d5810f0ad8eb651ae9a691e2 831 SUPERFAMILY SSF54211 607 782 2.05E-58 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS08310 5f25115e1787aa99704d9483535419f2 144 Gene3D G3DSA:3.10.490.10 1 133 1.0E-43 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like NIDE_RS08310 5f25115e1787aa99704d9483535419f2 144 PANTHER PTHR12935 3 82 1.7E-22 T 23-04-2016 IPR017939 Gamma-glutamylcyclotransferase GO:0003839|GO:0006750 KEGG: 00480+2.3.2.4|MetaCyc: PWY-4041 NIDE_RS08310 5f25115e1787aa99704d9483535419f2 144 PANTHER PTHR12935:SF4 3 82 1.7E-22 T 23-04-2016 NIDE_RS08310 5f25115e1787aa99704d9483535419f2 144 SUPERFAMILY SSF110857 1 117 1.7E-17 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like NIDE_RS08310 5f25115e1787aa99704d9483535419f2 144 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 4 101 3.6E-10 T 23-04-2016 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 21 447 4.1E-104 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 PANTHER PTHR24095 5 506 9.0E-132 T 23-04-2016 NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 Pfam PF00501 AMP-binding enzyme 6 424 9.7E-76 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 SUPERFAMILY SSF56801 3 519 2.49E-120 T 23-04-2016 NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 ProSitePatterns PS00455 Putative AMP-binding domain signature. 164 175 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 Gene3D G3DSA:3.30.300.30 418 518 3.9E-24 T 23-04-2016 NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 Gene3D G3DSA:3.40.50.980 174 328 1.4E-36 T 23-04-2016 NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 Gene3D G3DSA:2.30.38.10 335 414 6.6E-23 T 23-04-2016 NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 Gene3D G3DSA:3.40.50.980 3 107 5.7E-27 T 23-04-2016 NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 Gene3D G3DSA:3.40.50.980 149 173 5.7E-27 T 23-04-2016 NIDE_RS12345 300a58556c009d8cc84254060a99b0fb 521 Pfam PF13193 AMP-binding enzyme C-terminal domain 432 506 3.9E-6 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS15435 cee7b48a62c849456f3e908be227a6bc 314 SUPERFAMILY SSF56436 63 308 1.51E-58 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS15435 cee7b48a62c849456f3e908be227a6bc 314 Gene3D G3DSA:3.90.1580.10 61 311 4.8E-60 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS15435 cee7b48a62c849456f3e908be227a6bc 314 PANTHER PTHR23150 65 314 1.4E-44 T 23-04-2016 NIDE_RS15435 cee7b48a62c849456f3e908be227a6bc 314 Pfam PF03781 Sulfatase-modifying factor enzyme 1 64 306 7.8E-44 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 Gene3D G3DSA:3.40.50.980 223 379 9.1E-49 T 23-04-2016 NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 Gene3D G3DSA:2.30.38.10 380 453 3.9E-26 T 23-04-2016 NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 Pfam PF00501 AMP-binding enzyme 29 462 4.4E-107 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 PANTHER PTHR24096 1 571 5.5E-183 T 23-04-2016 NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 ProSitePatterns PS00455 Putative AMP-binding domain signature. 214 225 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 Pfam PF13193 AMP-binding enzyme C-terminal domain 472 547 5.1E-21 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 Gene3D G3DSA:3.30.300.30 460 558 3.1E-32 T 23-04-2016 NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 Gene3D G3DSA:3.40.50.980 199 222 6.5E-42 T 23-04-2016 NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 Gene3D G3DSA:3.40.50.980 22 135 6.5E-42 T 23-04-2016 NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 SUPERFAMILY SSF56801 18 559 3.66E-160 T 23-04-2016 NIDE_RS14235 d45d7e3da815a5cb7760706a87a46fc1 571 PANTHER PTHR24096:SF208 1 571 5.5E-183 T 23-04-2016 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 PIRSF PIRSF017184 2 516 1.7E-149 T 23-04-2016 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 230 512 1.2E-69 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 231 513 22.486 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 PANTHER PTHR12592:SF0 1 514 6.7E-151 T 23-04-2016 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 Pfam PF03853 YjeF-related protein N-terminus 27 195 3.7E-47 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 5 216 1.6E-45 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 6 216 26.184 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 452 462 - T 23-04-2016 IPR017953 Carbohydrate kinase, predicted, conserved site NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 Gene3D G3DSA:3.40.1190.20 239 514 7.6E-92 T 23-04-2016 IPR029056 Ribokinase-like NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 Gene3D G3DSA:3.40.50.10260 1 238 9.5E-72 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 Pfam PF01256 Carbohydrate kinase 255 509 1.1E-59 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 SUPERFAMILY SSF64153 3 253 4.32E-64 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 SUPERFAMILY SSF53613 228 513 2.12E-75 T 23-04-2016 IPR029056 Ribokinase-like NIDE_RS18785 06ee36258d6d4711056f784e93eb8f6d 516 PANTHER PTHR12592 1 514 6.7E-151 T 23-04-2016 NIDE_RS06910 33b3f171e710975a88dba1fbba3371e8 107 PANTHER PTHR24012 3 104 6.8E-33 T 23-04-2016 NIDE_RS06910 33b3f171e710975a88dba1fbba3371e8 107 Gene3D G3DSA:3.30.70.330 2 98 4.3E-36 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 NIDE_RS06910 33b3f171e710975a88dba1fbba3371e8 107 SMART SM00360 4 77 7.7E-30 T 23-04-2016 IPR000504 RNA recognition motif domain GO:0003676 NIDE_RS06910 33b3f171e710975a88dba1fbba3371e8 107 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 74 1.5E-23 T 23-04-2016 IPR000504 RNA recognition motif domain GO:0003676 NIDE_RS06910 33b3f171e710975a88dba1fbba3371e8 107 SUPERFAMILY SSF54928 3 105 5.91E-36 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 NIDE_RS18585 c2411ff63bde776322ab21ebda3c869a 243 Pfam PF01925 Sulfite exporter TauE/SafE 6 233 3.2E-12 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 NIDE_RS00755 f67d51b8aecb56cc3fd568fadd0a306e 308 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 4 290 5.2E-91 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 NIDE_RS00755 f67d51b8aecb56cc3fd568fadd0a306e 308 SUPERFAMILY SSF54211 3 123 8.34E-37 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS00755 f67d51b8aecb56cc3fd568fadd0a306e 308 PANTHER PTHR33694:SF1 2 291 7.9E-113 T 23-04-2016 NIDE_RS00755 f67d51b8aecb56cc3fd568fadd0a306e 308 SUPERFAMILY SSF54211 133 275 9.86E-46 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS00755 f67d51b8aecb56cc3fd568fadd0a306e 308 Gene3D G3DSA:3.30.1700.10 128 279 3.5E-55 T 23-04-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 NIDE_RS00755 f67d51b8aecb56cc3fd568fadd0a306e 308 PANTHER PTHR33694 2 291 7.9E-113 T 23-04-2016 NIDE_RS00755 f67d51b8aecb56cc3fd568fadd0a306e 308 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 273 1.5E-101 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 NIDE_RS00755 f67d51b8aecb56cc3fd568fadd0a306e 308 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 2 278 41.915 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 NIDE_RS00755 f67d51b8aecb56cc3fd568fadd0a306e 308 Gene3D G3DSA:3.30.230.20 3 123 6.0E-41 T 23-04-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00091 617 683 3.3E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00091 486 553 0.013 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00091 358 425 1.3E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00091 46 112 2.2E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00086 432 474 9.4 T 23-04-2016 IPR001610 PAC motif NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00086 705 747 9.6E-8 T 23-04-2016 IPR001610 PAC motif NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00086 563 605 64.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00086 124 165 13.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00073 1327 1425 5.4E-4 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00065 199 351 5.3E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SUPERFAMILY SSF55785 345 472 1.48E-20 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 955 973 2.1E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 920 934 2.1E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 979 992 2.1E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 938 948 2.1E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PANTHER PTHR24423 1141 1316 4.9E-199 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PANTHER PTHR24423 705 998 4.9E-199 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PANTHER PTHR24423 601 688 4.9E-199 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PANTHER PTHR24423 57 160 4.9E-199 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SUPERFAMILY SSF55781 200 342 1.53E-21 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Pfam PF00072 Response regulator receiver domain 1160 1273 9.8E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Pfam PF00072 Response regulator receiver domain 1015 1129 3.3E-17 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SUPERFAMILY SSF55785 471 603 1.2E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Gene3D G3DSA:3.30.450.20 46 163 2.7E-20 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SUPERFAMILY SSF52172 1012 1136 2.28E-25 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Pfam PF13188 PAS domain 486 533 4.0E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SUPERFAMILY SSF47226 1303 1427 3.66E-23 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 879 992 9.1E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SUPERFAMILY SSF55785 602 745 1.27E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Gene3D G3DSA:3.40.50.2300 1152 1287 1.2E-44 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SUPERFAMILY SSF55785 57 169 2.9E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Gene3D G3DSA:3.30.450.40 199 349 2.4E-15 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SUPERFAMILY SSF47384 751 833 2.35E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00448 1158 1275 1.2E-38 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00448 1013 1131 2.6E-17 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Gene3D G3DSA:3.30.565.10 833 995 1.5E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Gene3D G3DSA:3.40.50.2300 1012 1139 4.3E-27 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Gene3D G3DSA:3.30.450.20 350 472 1.3E-21 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Pfam PF13426 PAS domain 629 745 1.2E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Pfam PF13426 PAS domain 57 164 1.4E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PANTHER PTHR24423:SF382 1141 1316 4.9E-199 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PANTHER PTHR24423:SF382 705 998 4.9E-199 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PANTHER PTHR24423:SF382 601 688 4.9E-199 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 PANTHER PTHR24423:SF382 57 160 4.9E-199 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00388 767 832 5.8E-25 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Pfam PF00512 His Kinase A (phospho-acceptor) domain 767 832 2.7E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Pfam PF08448 PAS fold 365 475 1.0E-16 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SUPERFAMILY SSF52172 1158 1291 8.82E-40 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Gene3D G3DSA:3.30.450.20 473 602 2.7E-17 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Gene3D G3DSA:3.30.450.20 603 745 1.0E-24 T 23-04-2016 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Pfam PF01590 GAF domain 200 340 2.1E-10 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Pfam PF01627 Hpt domain 1338 1413 1.1E-8 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Gene3D G3DSA:1.10.287.130 760 828 6.6E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 355 477 2.0E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 483 611 1.6E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 48 169 8.0E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 620 754 1.9E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 Gene3D G3DSA:1.20.120.160 1320 1425 3.2E-21 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SUPERFAMILY SSF55874 821 992 9.69E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20255 b8f32771856ec4d28cf63f735dd19db0 1431 SMART SM00387 879 995 7.2E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS06360 fb4cdc20dfb40a22aadac10a924c1ea0 98 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 70 4.6E-18 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS06360 fb4cdc20dfb40a22aadac10a924c1ea0 98 SUPERFAMILY SSF143120 3 75 2.22E-18 T 23-04-2016 NIDE_RS06360 fb4cdc20dfb40a22aadac10a924c1ea0 98 Gene3D G3DSA:3.40.1620.10 1 51 4.2E-13 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS06360 fb4cdc20dfb40a22aadac10a924c1ea0 98 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 53 4.1E-12 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS06360 fb4cdc20dfb40a22aadac10a924c1ea0 98 PANTHER PTHR33713:SF6 1 70 6.3E-13 T 23-04-2016 NIDE_RS06360 fb4cdc20dfb40a22aadac10a924c1ea0 98 PANTHER PTHR33713 1 70 6.3E-13 T 23-04-2016 NIDE_RS05880 cffd148c2b3ca56458d5c7265b0025a2 208 Pfam PF02486 Replication initiation factor 18 164 9.4E-25 T 23-04-2016 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 NIDE_RS06575 88c5154fdc4fef54b193984325e50d54 259 PANTHER PTHR33969 4 259 5.0E-75 T 23-04-2016 NIDE_RS06575 88c5154fdc4fef54b193984325e50d54 259 Pfam PF02616 Segregation and condensation protein ScpA 25 239 3.7E-31 T 23-04-2016 IPR003768 Segregation and condensation protein A NIDE_RS06575 88c5154fdc4fef54b193984325e50d54 259 PANTHER PTHR33969:SF2 4 259 5.0E-75 T 23-04-2016 NIDE_RS06575 88c5154fdc4fef54b193984325e50d54 259 Hamap MF_01805 Segregation and condensation protein A [scpA]. 8 242 23.715 T 23-04-2016 IPR003768 Segregation and condensation protein A NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 18 322 2.1E-132 T 23-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 SUPERFAMILY SSF47323 345 488 1.96E-26 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 SMART SM00840 358 420 7.1E-12 T 23-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 SUPERFAMILY SSF52374 5 322 6.7E-100 T 23-04-2016 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 PANTHER PTHR10890 4 489 5.2E-235 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 Gene3D G3DSA:3.40.50.620 23 313 2.4E-112 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 5 489 38.706 T 23-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 5 489 2.0E-167 T 23-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 224 245 7.6E-30 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 28 39 7.6E-30 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 64 73 7.6E-30 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 193 211 7.6E-30 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 Gene3D G3DSA:1.20.120.640 315 411 5.7E-18 T 23-04-2016 NIDE_RS18720 ae6c2126e032ae06248fe484650b0204 489 Pfam PF09190 DALR domain 358 416 4.9E-12 T 23-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 NIDE_RS18990 c525702f9188b650fc0ac2637caf32dc 219 PIRSF PIRSF001435 3 218 7.8E-41 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 NIDE_RS18990 c525702f9188b650fc0ac2637caf32dc 219 Hamap MF_00942 Endonuclease III [nth]. 1 216 30.045 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 NIDE_RS18990 c525702f9188b650fc0ac2637caf32dc 219 SMART SM00478 45 192 6.1E-49 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 NIDE_RS18990 c525702f9188b650fc0ac2637caf32dc 219 PANTHER PTHR10359 34 210 1.4E-69 T 23-04-2016 NIDE_RS18990 c525702f9188b650fc0ac2637caf32dc 219 Pfam PF00633 Helix-hairpin-helix motif 106 133 1.8E-8 T 23-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 NIDE_RS18990 c525702f9188b650fc0ac2637caf32dc 219 Gene3D G3DSA:1.10.1670.10 130 211 1.3E-29 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal NIDE_RS18990 c525702f9188b650fc0ac2637caf32dc 219 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 41 174 2.2E-20 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 NIDE_RS18990 c525702f9188b650fc0ac2637caf32dc 219 Gene3D G3DSA:1.10.340.30 34 129 2.7E-29 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 NIDE_RS18990 c525702f9188b650fc0ac2637caf32dc 219 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 194 210 - T 23-04-2016 IPR004035 Endonuclease III, iron-sulphur binding site NIDE_RS18990 c525702f9188b650fc0ac2637caf32dc 219 SUPERFAMILY SSF48150 33 216 9.58E-60 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 NIDE_RS16105 a3ed1c9fb4cdd15f2ba40ecaf567cbab 253 Pfam PF01323 DSBA-like thioredoxin domain 104 247 1.5E-25 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 NIDE_RS16105 a3ed1c9fb4cdd15f2ba40ecaf567cbab 253 PANTHER PTHR13887:SF25 25 252 4.0E-71 T 23-04-2016 NIDE_RS16105 a3ed1c9fb4cdd15f2ba40ecaf567cbab 253 PANTHER PTHR13887 25 252 4.0E-71 T 23-04-2016 NIDE_RS16105 a3ed1c9fb4cdd15f2ba40ecaf567cbab 253 SUPERFAMILY SSF52833 82 247 1.24E-41 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS16105 a3ed1c9fb4cdd15f2ba40ecaf567cbab 253 Gene3D G3DSA:3.40.30.10 84 250 1.6E-48 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS15495 47f635384bc01fba898a5f2184bdfb80 241 Gene3D G3DSA:3.90.550.10 1 229 2.9E-59 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS15495 47f635384bc01fba898a5f2184bdfb80 241 SUPERFAMILY SSF53448 1 230 2.93E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS15495 47f635384bc01fba898a5f2184bdfb80 241 Pfam PF00483 Nucleotidyl transferase 1 230 9.7E-33 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 NIDE_RS15495 47f635384bc01fba898a5f2184bdfb80 241 PANTHER PTHR22572 1 228 1.0E-57 T 23-04-2016 NIDE_RS04100 630c2e6b928d00e71fca5852f4a3a684 408 PANTHER PTHR32309 31 398 2.0E-22 T 23-04-2016 NIDE_RS04100 630c2e6b928d00e71fca5852f4a3a684 408 Pfam PF02706 Chain length determinant protein 32 182 1.6E-14 T 23-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 NIDE_RS04100 630c2e6b928d00e71fca5852f4a3a684 408 Pfam PF13807 G-rich domain on putative tyrosine kinase 324 394 3.4E-8 T 23-04-2016 IPR032807 Tyrosine kinase, G-rich domain NIDE_RS04100 630c2e6b928d00e71fca5852f4a3a684 408 PANTHER PTHR32309:SF13 31 398 2.0E-22 T 23-04-2016 NIDE_RS14415 cee0991fa0547b252f3baabf6fca72be 364 PANTHER PTHR24220 6 245 3.7E-84 T 23-04-2016 NIDE_RS14415 cee0991fa0547b252f3baabf6fca72be 364 PANTHER PTHR24220:SF282 6 245 3.7E-84 T 23-04-2016 NIDE_RS14415 cee0991fa0547b252f3baabf6fca72be 364 Pfam PF00005 ABC transporter 26 166 2.3E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS14415 cee0991fa0547b252f3baabf6fca72be 364 SMART SM00382 29 225 3.6E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS14415 cee0991fa0547b252f3baabf6fca72be 364 SUPERFAMILY SSF52540 9 244 1.08E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14415 cee0991fa0547b252f3baabf6fca72be 364 Gene3D G3DSA:2.40.50.100 285 353 3.1E-17 T 23-04-2016 NIDE_RS14415 cee0991fa0547b252f3baabf6fca72be 364 SUPERFAMILY SSF50331 245 358 8.74E-26 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal NIDE_RS14415 cee0991fa0547b252f3baabf6fca72be 364 Pfam PF03459 TOBE domain 297 358 2.3E-11 T 23-04-2016 IPR005116 Transport-associated OB, type 1 NIDE_RS14415 cee0991fa0547b252f3baabf6fca72be 364 Gene3D G3DSA:3.40.50.300 8 236 2.2E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14415 cee0991fa0547b252f3baabf6fca72be 364 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS12065 46e348876116c43ca829314381876466 113 SUPERFAMILY SSF47413 32 98 1.18E-11 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS12065 46e348876116c43ca829314381876466 113 Pfam PF01381 Helix-turn-helix 43 84 5.9E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS12065 46e348876116c43ca829314381876466 113 SMART SM00530 42 97 1.6E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS12065 46e348876116c43ca829314381876466 113 Gene3D G3DSA:1.10.260.40 38 97 1.1E-12 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 358 382 8.9E-53 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 442 462 8.9E-53 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 100 120 8.9E-53 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 427 442 8.9E-53 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 325 346 8.9E-53 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 382 405 8.9E-53 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 58 81 8.9E-53 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 48 463 1.1E-117 T 23-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 Gene3D G3DSA:2.40.50.100 310 345 5.9E-18 T 23-04-2016 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 Gene3D G3DSA:2.40.50.100 91 122 5.9E-18 T 23-04-2016 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 SUPERFAMILY SSF111369 255 365 4.97E-5 T 23-04-2016 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 ProSitePatterns PS00543 HlyD family secretion proteins signature. 427 449 - T 23-04-2016 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 Pfam PF13437 HlyD family secretion protein 313 426 7.6E-16 T 23-04-2016 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 Pfam PF13533 Biotin-lipoyl like 92 123 2.8E-6 T 23-04-2016 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PANTHER PTHR30386 172 463 1.4E-64 T 23-04-2016 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PANTHER PTHR30386 51 143 1.4E-64 T 23-04-2016 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PANTHER PTHR30386:SF4 172 463 1.4E-64 T 23-04-2016 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 PANTHER PTHR30386:SF4 51 143 1.4E-64 T 23-04-2016 NIDE_RS15815 e3ba1f3be1041811cc90b26dbd463d7c 463 SUPERFAMILY SSF111369 90 153 3.14E-5 T 23-04-2016 NIDE_RS10670 e7f9d0f16c182c2b5558cd5d74212bbe 406 Gene3D G3DSA:3.40.640.10 58 263 4.8E-52 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS10670 e7f9d0f16c182c2b5558cd5d74212bbe 406 Gene3D G3DSA:3.90.1150.10 264 394 1.3E-23 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS10670 e7f9d0f16c182c2b5558cd5d74212bbe 406 SUPERFAMILY SSF53383 35 390 7.34E-81 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS10670 e7f9d0f16c182c2b5558cd5d74212bbe 406 Pfam PF00155 Aminotransferase class I and II 58 389 2.0E-45 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NIDE_RS10670 e7f9d0f16c182c2b5558cd5d74212bbe 406 PANTHER PTHR11751 24 399 3.4E-77 T 23-04-2016 NIDE_RS03945 b0b0707d16a1ecafb7be36d49b6ec87c 238 Gene3D G3DSA:1.10.10.10 136 233 2.4E-30 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS03945 b0b0707d16a1ecafb7be36d49b6ec87c 238 PANTHER PTHR26402 9 233 3.2E-94 T 23-04-2016 NIDE_RS03945 b0b0707d16a1ecafb7be36d49b6ec87c 238 SUPERFAMILY SSF52172 5 138 1.39E-43 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS03945 b0b0707d16a1ecafb7be36d49b6ec87c 238 SMART SM00448 9 122 6.9E-47 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03945 b0b0707d16a1ecafb7be36d49b6ec87c 238 PANTHER PTHR26402:SF614 9 233 3.2E-94 T 23-04-2016 NIDE_RS03945 b0b0707d16a1ecafb7be36d49b6ec87c 238 SUPERFAMILY SSF46894 131 232 4.82E-29 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS03945 b0b0707d16a1ecafb7be36d49b6ec87c 238 Gene3D G3DSA:3.40.50.2300 4 132 1.9E-44 T 23-04-2016 NIDE_RS03945 b0b0707d16a1ecafb7be36d49b6ec87c 238 SMART SM00862 158 231 3.6E-23 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS03945 b0b0707d16a1ecafb7be36d49b6ec87c 238 Pfam PF00072 Response regulator receiver domain 11 123 2.8E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03945 b0b0707d16a1ecafb7be36d49b6ec87c 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 231 6.6E-22 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS06415 beceb01eeb44b1134f315d9e7e781887 152 PANTHER PTHR21058 9 152 2.4E-69 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS06415 beceb01eeb44b1134f315d9e7e781887 152 SUPERFAMILY SSF52121 5 151 8.77E-56 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS06415 beceb01eeb44b1134f315d9e7e781887 152 Gene3D G3DSA:3.40.50.960 3 151 1.5E-62 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS06415 beceb01eeb44b1134f315d9e7e781887 152 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 6.6E-56 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS06415 beceb01eeb44b1134f315d9e7e781887 152 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 152 28.119 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS06415 beceb01eeb44b1134f315d9e7e781887 152 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 15 150 3.4E-49 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS10030 ce0b567e07cbc782a142d3d11001c114 343 SMART SM00729 48 276 3.3E-4 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS10030 ce0b567e07cbc782a142d3d11001c114 343 Gene3D G3DSA:3.20.20.70 51 277 4.7E-9 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS10030 ce0b567e07cbc782a142d3d11001c114 343 Pfam PF04055 Radical SAM superfamily 52 230 1.9E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS10030 ce0b567e07cbc782a142d3d11001c114 343 PANTHER PTHR11228 25 297 1.3E-71 T 23-04-2016 NIDE_RS10030 ce0b567e07cbc782a142d3d11001c114 343 SUPERFAMILY SSF102114 39 251 3.4E-14 T 23-04-2016 NIDE_RS10030 ce0b567e07cbc782a142d3d11001c114 343 PANTHER PTHR11228:SF26 25 297 1.3E-71 T 23-04-2016 NIDE_RS08855 a1a4a52e7aa746f7e3058be003209183 280 PANTHER PTHR30520 4 277 2.5E-83 T 23-04-2016 NIDE_RS08855 a1a4a52e7aa746f7e3058be003209183 280 Gene3D G3DSA:1.20.1080.10 36 275 7.4E-75 T 23-04-2016 IPR023271 Aquaporin-like NIDE_RS08855 a1a4a52e7aa746f7e3058be003209183 280 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 178 188 - T 23-04-2016 IPR024002 Formate/nitrite transporter, conserved site NIDE_RS08855 a1a4a52e7aa746f7e3058be003209183 280 Pfam PF01226 Formate/nitrite transporter 21 271 3.4E-72 T 23-04-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 NIDE_RS08855 a1a4a52e7aa746f7e3058be003209183 280 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 93 102 - T 23-04-2016 IPR024002 Formate/nitrite transporter, conserved site NIDE_RS02790 2b10ffa3216abd794ed8ab27b9a92db2 522 Pfam PF00361 Proton-conducting membrane transporter 128 414 2.3E-83 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS02790 2b10ffa3216abd794ed8ab27b9a92db2 522 PANTHER PTHR22773 1 496 1.2E-215 T 23-04-2016 NIDE_RS02790 2b10ffa3216abd794ed8ab27b9a92db2 522 PANTHER PTHR22773:SF40 1 496 1.2E-215 T 23-04-2016 NIDE_RS02790 2b10ffa3216abd794ed8ab27b9a92db2 522 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 164 188 1.6E-47 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS02790 2b10ffa3216abd794ed8ab27b9a92db2 522 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 234 258 1.6E-47 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS02790 2b10ffa3216abd794ed8ab27b9a92db2 522 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 374 400 1.6E-47 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS02790 2b10ffa3216abd794ed8ab27b9a92db2 522 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 322 341 1.6E-47 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS02790 2b10ffa3216abd794ed8ab27b9a92db2 522 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 134 153 1.6E-47 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS02790 2b10ffa3216abd794ed8ab27b9a92db2 522 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 482 4.3E-193 T 23-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 NIDE_RS09705 3821ad336203644f5cd915a18579885d 318 Pfam PF13551 Winged helix-turn helix 13 73 9.5E-13 T 23-04-2016 NIDE_RS09705 3821ad336203644f5cd915a18579885d 318 Pfam PF00665 Integrase core domain 162 282 4.3E-17 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS09705 3821ad336203644f5cd915a18579885d 318 SUPERFAMILY SSF53098 160 318 5.46E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09705 3821ad336203644f5cd915a18579885d 318 Gene3D G3DSA:3.30.420.10 169 317 8.1E-23 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09705 3821ad336203644f5cd915a18579885d 318 SUPERFAMILY SSF46689 12 113 1.61E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS13225 66c8702682d80764770a3a27660ac594 256 PANTHER PTHR22572 2 256 1.1E-131 T 23-04-2016 NIDE_RS13225 66c8702682d80764770a3a27660ac594 256 PANTHER PTHR22572:SF16 2 256 1.1E-131 T 23-04-2016 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940|UniPathway: UPA00055|UniPathway: UPA00281 NIDE_RS13225 66c8702682d80764770a3a27660ac594 256 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 1 256 3.8E-115 T 23-04-2016 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940|UniPathway: UPA00055|UniPathway: UPA00281 NIDE_RS13225 66c8702682d80764770a3a27660ac594 256 Pfam PF00483 Nucleotidyl transferase 2 201 1.1E-18 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 NIDE_RS13225 66c8702682d80764770a3a27660ac594 256 SUPERFAMILY SSF53448 1 256 2.29E-65 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13225 66c8702682d80764770a3a27660ac594 256 Gene3D G3DSA:3.90.550.10 1 255 1.4E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS18390 574a97916c463983ad4fb6e579c11498 110 Pfam PF00085 Thioredoxin 5 106 2.2E-8 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 NIDE_RS18390 574a97916c463983ad4fb6e579c11498 110 Gene3D G3DSA:3.40.30.10 2 108 2.0E-14 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS18390 574a97916c463983ad4fb6e579c11498 110 SUPERFAMILY SSF52833 3 108 4.79E-14 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS07055 3106aa56dbaa3e4a44b7e3906473d900 193 Pfam PF00839 Cysteine rich repeat 142 176 1.7E-5 T 23-04-2016 IPR001893 Cysteine-rich Golgi apparatus protein 1 repeat GO:0016020 NIDE_RS13265 2de61b46ac8293bc6cf3619f546e28ad 233 Pfam PF10531 SLBB domain 140 190 1.0E-10 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS13265 2de61b46ac8293bc6cf3619f546e28ad 233 Gene3D G3DSA:3.30.1950.10 68 131 7.4E-21 T 23-04-2016 NIDE_RS13265 2de61b46ac8293bc6cf3619f546e28ad 233 PANTHER PTHR33619 58 227 1.1E-43 T 23-04-2016 NIDE_RS13265 2de61b46ac8293bc6cf3619f546e28ad 233 Pfam PF02563 Polysaccharide biosynthesis/export protein 61 133 8.3E-22 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 NIDE_RS13265 2de61b46ac8293bc6cf3619f546e28ad 233 Gene3D G3DSA:3.10.560.10 132 224 1.1E-20 T 23-04-2016 NIDE_RS06220 679c1898775b74ec3365c278e77f3d34 241 SMART SM00382 29 216 1.4E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS06220 679c1898775b74ec3365c278e77f3d34 241 PANTHER PTHR24220:SF497 6 237 1.3E-131 T 23-04-2016 NIDE_RS06220 679c1898775b74ec3365c278e77f3d34 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 5 241 2.1E-107 T 23-04-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 NIDE_RS06220 679c1898775b74ec3365c278e77f3d34 241 PANTHER PTHR24220 6 237 1.3E-131 T 23-04-2016 NIDE_RS06220 679c1898775b74ec3365c278e77f3d34 241 SUPERFAMILY SSF52540 5 225 1.46E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06220 679c1898775b74ec3365c278e77f3d34 241 Gene3D G3DSA:3.40.50.300 3 230 3.8E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06220 679c1898775b74ec3365c278e77f3d34 241 Pfam PF00005 ABC transporter 21 166 4.2E-37 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS13555 8456fd85294b517eca6b76e6fe50efb0 389 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 367 7.8E-78 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS13555 8456fd85294b517eca6b76e6fe50efb0 389 Gene3D G3DSA:2.40.50.100 62 95 6.9E-22 T 23-04-2016 NIDE_RS13555 8456fd85294b517eca6b76e6fe50efb0 389 Gene3D G3DSA:2.40.50.100 170 204 6.9E-22 T 23-04-2016 NIDE_RS13555 8456fd85294b517eca6b76e6fe50efb0 389 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 287 2.3E-14 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS13555 8456fd85294b517eca6b76e6fe50efb0 389 PANTHER PTHR30158:SF2 5 374 3.6E-152 T 23-04-2016 NIDE_RS13555 8456fd85294b517eca6b76e6fe50efb0 389 SUPERFAMILY SSF111369 51 292 3.53E-70 T 23-04-2016 NIDE_RS13555 8456fd85294b517eca6b76e6fe50efb0 389 PANTHER PTHR30158 5 374 3.6E-152 T 23-04-2016 NIDE_RS05295 c37b8b16beba50f45c58290bae9d8853 244 Pfam PF11249 Protein of unknown function (DUF3047) 42 238 7.1E-72 T 23-04-2016 IPR021409 Protein of unknown function DUF3047 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 Pfam PF00072 Response regulator receiver domain 3 115 9.0E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 SUPERFAMILY SSF46689 405 451 7.17E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 SMART SM00448 1 116 1.8E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 PANTHER PTHR32071 1 461 1.4E-162 T 23-04-2016 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 176 189 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 Pfam PF02954 Bacterial regulatory protein, Fis family 414 450 2.7E-14 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 SUPERFAMILY SSF52172 1 195 1.85E-40 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 238 253 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 Pfam PF00158 Sigma-54 interaction domain 152 318 2.2E-65 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 SUPERFAMILY SSF52540 151 395 2.86E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 SMART SM00382 172 315 2.6E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 416 433 9.8E-12 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 433 453 9.8E-12 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 Gene3D G3DSA:3.40.50.300 148 322 1.4E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 Gene3D G3DSA:1.10.8.60 324 398 9.4E-24 T 23-04-2016 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 Gene3D G3DSA:3.40.50.2300 1 117 8.3E-32 T 23-04-2016 NIDE_RS04835 03844f9876acc3f04efb53aced377b96 464 Gene3D G3DSA:1.10.10.60 399 451 5.1E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 Gene3D G3DSA:4.10.320.10 120 168 3.0E-17 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 SUPERFAMILY SSF47005 118 163 6.15E-11 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 Gene3D G3DSA:3.30.559.10 172 394 3.9E-78 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 Pfam PF00364 Biotin-requiring enzyme 5 76 2.7E-19 T 23-04-2016 IPR000089 Biotin/lipoyl attachment NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 174 394 7.3E-77 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 SUPERFAMILY SSF51230 2 86 3.66E-25 T 23-04-2016 IPR011053 Single hybrid motif NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 SUPERFAMILY SSF52777 175 394 4.31E-73 T 23-04-2016 NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 PANTHER PTHR23151 5 393 9.8E-148 T 23-04-2016 NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 Pfam PF02817 e3 binding domain 124 159 3.6E-15 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 NIDE_RS17995 347e9fa465aec227ac62385df3c8a07f 400 Gene3D G3DSA:2.40.50.100 2 88 2.9E-29 T 23-04-2016 NIDE_RS12180 4849a251aa6db3e083552b8efda95cf4 145 SUPERFAMILY SSF50341 3 135 2.35E-28 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS12180 4849a251aa6db3e083552b8efda95cf4 145 Gene3D G3DSA:2.40.50.180 39 83 1.6E-6 T 23-04-2016 NIDE_RS12180 4849a251aa6db3e083552b8efda95cf4 145 Pfam PF01584 CheW-like domain 3 134 1.2E-26 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS12180 4849a251aa6db3e083552b8efda95cf4 145 SMART SM00260 1 132 4.7E-17 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS12180 4849a251aa6db3e083552b8efda95cf4 145 PANTHER PTHR22617 1 136 2.0E-22 T 23-04-2016 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 PANTHER PTHR26402:SF151 7 215 1.7E-58 T 23-04-2016 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 4.0E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 4.0E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 4.0E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 Pfam PF00072 Response regulator receiver domain 9 120 2.6E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 SUPERFAMILY SSF46894 146 214 1.16E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 SUPERFAMILY SSF52172 7 133 8.25E-33 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 SMART SM00448 7 120 9.8E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 3.3E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 Gene3D G3DSA:1.10.10.10 159 214 1.3E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 SMART SM00421 151 208 1.2E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 PANTHER PTHR26402 7 215 1.7E-58 T 23-04-2016 NIDE_RS14165 5417c8d0a5d077d286c72f506bd71837 215 Gene3D G3DSA:3.40.50.2300 6 158 1.5E-38 T 23-04-2016 NIDE_RS13230 f3ea139d5d16d21f0d15b6691ce06084 423 PANTHER PTHR24220:SF117 52 299 6.6E-109 T 23-04-2016 NIDE_RS13230 f3ea139d5d16d21f0d15b6691ce06084 423 PANTHER PTHR24220:SF117 7 17 6.6E-109 T 23-04-2016 NIDE_RS13230 f3ea139d5d16d21f0d15b6691ce06084 423 Pfam PF00005 ABC transporter 55 186 1.1E-16 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS13230 f3ea139d5d16d21f0d15b6691ce06084 423 SUPERFAMILY SSF52540 50 251 1.02E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13230 f3ea139d5d16d21f0d15b6691ce06084 423 PANTHER PTHR24220 52 299 6.6E-109 T 23-04-2016 NIDE_RS13230 f3ea139d5d16d21f0d15b6691ce06084 423 PANTHER PTHR24220 7 17 6.6E-109 T 23-04-2016 NIDE_RS13230 f3ea139d5d16d21f0d15b6691ce06084 423 SMART SM00382 64 236 6.7E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS13230 f3ea139d5d16d21f0d15b6691ce06084 423 Gene3D G3DSA:3.40.50.300 51 252 1.7E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13230 f3ea139d5d16d21f0d15b6691ce06084 423 Gene3D G3DSA:3.40.50.300 2 16 1.7E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 PANTHER PTHR24095:SF173 394 1061 0.0 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 PANTHER PTHR24095:SF173 1 378 0.0 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 PANTHER PTHR24095:SF173 1098 2076 0.0 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:3.40.50.980 1585 1745 2.6E-42 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF52777 1306 1573 9.34E-57 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:3.30.300.30 1990 2105 1.7E-42 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:3.30.300.30 878 996 2.5E-38 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF52777 13 190 4.67E-45 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Pfam PF00501 AMP-binding enzyme 483 883 2.6E-96 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Pfam PF00501 AMP-binding enzyme 1588 1995 5.2E-84 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Pfam PF13745 HxxPF-repeated domain 2522 2612 1.7E-27 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF52777 1126 1305 1.45E-44 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF47336 984 1054 1.57E-18 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 2697 2984 1.1E-45 T 23-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SMART SM00823 Phosphopantetheine attachment site 992 1060 0.025 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SMART SM00823 Phosphopantetheine attachment site 2102 2171 3.0E-6 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Pfam PF00550 Phosphopantetheine attachment site 995 1053 1.9E-12 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Pfam PF00550 Phosphopantetheine attachment site 2104 2167 1.0E-13 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:2.30.38.10 794 873 1.6E-27 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:2.30.38.10 1907 1985 6.0E-26 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 PANTHER PTHR24095 394 1061 0.0 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 PANTHER PTHR24095 1 378 0.0 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 PANTHER PTHR24095 1098 2076 0.0 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:3.40.50.980 475 629 5.8E-55 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 ProSitePatterns PS00455 Putative AMP-binding domain signature. 623 634 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1736 1747 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF56801 1546 2115 3.4E-148 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:3.60.130.10 2864 2987 1.4E-63 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:3.60.130.10 2690 2832 1.4E-63 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF52777 192 444 2.22E-52 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF47336 2095 2204 3.66E-21 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF52777 2193 2381 3.11E-46 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:1.10.1200.10 2106 2170 1.1E-27 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:1.10.1200.10 997 1057 1.6E-26 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Pfam PF13193 AMP-binding enzyme C-terminal domain 2003 2076 1.3E-11 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF56801 439 1005 8.77E-155 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1016 1031 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1609 2019 9.0E-125 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 502 906 2.9E-132 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Pfam PF00668 Condensation domain 2189 2500 1.8E-74 T 23-04-2016 IPR001242 Condensation domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Pfam PF00668 Condensation domain 8 309 3.2E-61 T 23-04-2016 IPR001242 Condensation domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Pfam PF00668 Condensation domain 1121 1424 2.1E-66 T 23-04-2016 IPR001242 Condensation domain NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF52777 2389 2634 5.45E-60 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 SUPERFAMILY SSF51197 2676 2986 1.05E-82 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:3.40.50.980 630 793 1.7E-37 T 23-04-2016 NIDE_RS20565 36eb66b8007cc4d21cabfa546b50c2a1 2999 Gene3D G3DSA:3.40.50.980 1746 1906 2.2E-38 T 23-04-2016 NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 PIRSF PIRSF003128 1 560 4.2E-173 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 PANTHER PTHR11059 2 564 2.4E-162 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 SUPERFAMILY SSF52540 288 316 3.15E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 SUPERFAMILY SSF52540 345 511 3.15E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 SUPERFAMILY SSF52540 1 201 3.15E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 554 1.8E-161 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 25 38 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 Gene3D G3DSA:3.40.50.300 434 498 2.2E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 Gene3D G3DSA:3.40.50.300 352 378 2.2E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 512 4.3E-17 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal NIDE_RS07295 3ce5a26dd5155165a0afd5f5e30d37b7 565 Gene3D G3DSA:3.40.50.300 1 208 2.1E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19730 0c04166a521ff7a8884bdba70af11db6 168 SUPERFAMILY SSF46767 78 159 1.83E-29 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 NIDE_RS19730 0c04166a521ff7a8884bdba70af11db6 168 SUPERFAMILY SSF53155 2 84 4.9E-9 T 23-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 NIDE_RS19730 0c04166a521ff7a8884bdba70af11db6 168 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 79 158 5.7E-30 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 NIDE_RS19730 0c04166a521ff7a8884bdba70af11db6 168 PANTHER PTHR10815:SF5 1 159 2.6E-46 T 23-04-2016 NIDE_RS19730 0c04166a521ff7a8884bdba70af11db6 168 Gene3D G3DSA:1.10.10.10 78 160 1.8E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS19730 0c04166a521ff7a8884bdba70af11db6 168 PANTHER PTHR10815 1 159 2.6E-46 T 23-04-2016 NIDE_RS19730 0c04166a521ff7a8884bdba70af11db6 168 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 80 159 2.4E-29 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 NIDE_RS19730 0c04166a521ff7a8884bdba70af11db6 168 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 129 135 - T 23-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 NIDE_RS03490 2f1cdc57f2680dc898454b9f1799f729 373 SUPERFAMILY SSF53756 1 361 1.04E-104 T 23-04-2016 NIDE_RS03490 2f1cdc57f2680dc898454b9f1799f729 373 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 187 352 3.4E-41 T 23-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS03490 2f1cdc57f2680dc898454b9f1799f729 373 Gene3D G3DSA:3.40.50.2000 1 199 9.6E-57 T 23-04-2016 NIDE_RS03490 2f1cdc57f2680dc898454b9f1799f729 373 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 3 142 6.0E-30 T 23-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS03490 2f1cdc57f2680dc898454b9f1799f729 373 PANTHER PTHR21015 1 373 4.2E-114 T 23-04-2016 NIDE_RS03490 2f1cdc57f2680dc898454b9f1799f729 373 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 3 360 33.062 T 23-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS03490 2f1cdc57f2680dc898454b9f1799f729 373 Gene3D G3DSA:3.40.50.2000 253 332 1.1E-4 T 23-04-2016 NIDE_RS03490 2f1cdc57f2680dc898454b9f1799f729 373 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 354 6.5E-91 T 23-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS03490 2f1cdc57f2680dc898454b9f1799f729 373 PANTHER PTHR21015:SF22 1 373 4.2E-114 T 23-04-2016 NIDE_RS05380 004ef9ff711c32288377a07453d7c1d4 139 Pfam PF00072 Response regulator receiver domain 6 107 6.8E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05380 004ef9ff711c32288377a07453d7c1d4 139 PANTHER PTHR26402:SF583 4 104 1.6E-16 T 23-04-2016 NIDE_RS05380 004ef9ff711c32288377a07453d7c1d4 139 PANTHER PTHR26402 4 104 1.6E-16 T 23-04-2016 NIDE_RS05380 004ef9ff711c32288377a07453d7c1d4 139 SMART SM00448 4 117 1.8E-11 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05380 004ef9ff711c32288377a07453d7c1d4 139 SUPERFAMILY SSF52172 1 109 2.42E-17 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS05380 004ef9ff711c32288377a07453d7c1d4 139 Gene3D G3DSA:3.40.50.2300 2 119 2.7E-17 T 23-04-2016 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 SUPERFAMILY SSF56053 1 82 3.84E-23 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 Gene3D G3DSA:3.90.930.12 2 82 1.2E-26 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 PANTHER PTHR11655:SF14 1 178 8.1E-75 T 23-04-2016 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 PIRSF PIRSF002162 1 177 1.9E-41 T 23-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 PANTHER PTHR11655 1 178 8.1E-75 T 23-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 9.6E-66 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 34.913 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 Gene3D G3DSA:3.90.930.12 83 177 1.2E-33 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 SUPERFAMILY SSF56053 83 177 5.1E-31 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 Pfam PF00347 Ribosomal protein L6 11 82 3.0E-11 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 Pfam PF00347 Ribosomal protein L6 91 164 2.2E-14 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.3E-25 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.3E-25 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS06140 a0cca212d396ce26cb9a24863c6c1a05 178 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.3E-25 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS03990 52f9691590ebc8c31716ae54bf428922 401 Pfam PF01103 Surface antigen 93 369 1.5E-16 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 NIDE_RS03990 52f9691590ebc8c31716ae54bf428922 401 Gene3D G3DSA:2.40.160.50 246 387 4.2E-10 T 23-04-2016 NIDE_RS03990 52f9691590ebc8c31716ae54bf428922 401 PANTHER PTHR12815:SF11 92 386 5.3E-16 T 23-04-2016 NIDE_RS03990 52f9691590ebc8c31716ae54bf428922 401 PANTHER PTHR12815 92 386 5.3E-16 T 23-04-2016 NIDE_RS16685 e7095cb4562b5df2c3555d8ae70426ca 119 Pfam PF12680 SnoaL-like domain 10 89 9.2E-15 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain NIDE_RS16685 e7095cb4562b5df2c3555d8ae70426ca 119 SUPERFAMILY SSF54427 3 116 6.13E-20 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS16685 e7095cb4562b5df2c3555d8ae70426ca 119 Gene3D G3DSA:3.10.450.50 1 116 3.4E-21 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS10280 55814ad4991519034dfbb7a9b08482a3 425 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 270 281 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS10280 55814ad4991519034dfbb7a9b08482a3 425 Pfam PF12801 4Fe-4S binding domain 218 254 0.33 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS10280 55814ad4991519034dfbb7a9b08482a3 425 Pfam PF12801 4Fe-4S binding domain 92 124 1.3E-5 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS10280 55814ad4991519034dfbb7a9b08482a3 425 Pfam PF12801 4Fe-4S binding domain 276 284 18.0 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS10280 55814ad4991519034dfbb7a9b08482a3 425 PANTHER PTHR30176 46 345 2.9E-20 T 23-04-2016 NIDE_RS10280 55814ad4991519034dfbb7a9b08482a3 425 Gene3D G3DSA:3.30.70.20 268 317 1.9E-7 T 23-04-2016 NIDE_RS10280 55814ad4991519034dfbb7a9b08482a3 425 SUPERFAMILY SSF54862 102 120 7.33E-12 T 23-04-2016 NIDE_RS10280 55814ad4991519034dfbb7a9b08482a3 425 SUPERFAMILY SSF54862 198 318 7.33E-12 T 23-04-2016 NIDE_RS09980 365aedb547e9f5486d14b7239a62c9c2 339 PIRSF PIRSF018266 11 339 1.5E-83 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component NIDE_RS09980 365aedb547e9f5486d14b7239a62c9c2 339 PANTHER PTHR30273 12 339 7.5E-62 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component NIDE_RS09980 365aedb547e9f5486d14b7239a62c9c2 339 Pfam PF04773 FecR protein 134 226 1.1E-22 T 23-04-2016 IPR006860 FecR protein NIDE_RS09980 365aedb547e9f5486d14b7239a62c9c2 339 Pfam PF16220 Domain of unknown function (DUF4880) 20 61 4.1E-12 T 23-04-2016 IPR032623 FecR, N-terminal NIDE_RS09980 365aedb547e9f5486d14b7239a62c9c2 339 PANTHER PTHR30273:SF2 12 339 7.5E-62 T 23-04-2016 NIDE_RS09980 365aedb547e9f5486d14b7239a62c9c2 339 Pfam PF16344 Domain of unknown function (DUF4974) 241 328 3.5E-7 T 23-04-2016 IPR032508 Protein FecR, C-terminal NIDE_RS18005 3cd5e040d5efa3b12a363d83ff03dc1f 325 Gene3D G3DSA:3.40.50.970 2 324 1.5E-132 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS18005 3cd5e040d5efa3b12a363d83ff03dc1f 325 SUPERFAMILY SSF52518 3 324 2.09E-101 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS18005 3cd5e040d5efa3b12a363d83ff03dc1f 325 Pfam PF00676 Dehydrogenase E1 component 15 314 2.1E-85 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 NIDE_RS18005 3cd5e040d5efa3b12a363d83ff03dc1f 325 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 7 322 3.1E-133 T 23-04-2016 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 NIDE_RS18005 3cd5e040d5efa3b12a363d83ff03dc1f 325 PANTHER PTHR11516 1 325 5.9E-151 T 23-04-2016 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 SUPERFAMILY SSF50249 5 103 3.21E-20 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 SUPERFAMILY SSF55681 113 424 1.49E-92 T 23-04-2016 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 6 428 9.2E-143 T 23-04-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 Pfam PF01336 OB-fold nucleic acid binding domain 17 93 3.7E-13 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 Gene3D G3DSA:2.40.50.140 6 102 7.2E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 Pfam PF00152 tRNA synthetases class II (D, K and N) 114 424 1.9E-82 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 PANTHER PTHR22594 3 430 6.3E-177 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 Gene3D G3DSA:3.30.930.10 103 428 1.3E-112 T 23-04-2016 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 2 430 40.084 T 23-04-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 345 361 8.5E-15 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 197 210 8.5E-15 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 385 399 8.5E-15 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 181 193 8.5E-15 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS03445 75a1b64ca4a975002361ed12e4c2e566 430 PANTHER PTHR22594:SF16 3 430 6.3E-177 T 23-04-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 SUPERFAMILY SSF56176 13 271 6.91E-56 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 PANTHER PTHR11748:SF35 224 514 1.2E-117 T 23-04-2016 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 PANTHER PTHR11748:SF35 6 186 1.2E-117 T 23-04-2016 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 Pfam PF02754 Cysteine-rich domain 828 911 1.1E-13 T 23-04-2016 IPR004017 Cysteine-rich domain NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 Pfam PF02754 Cysteine-rich domain 700 780 2.0E-8 T 23-04-2016 IPR004017 Cysteine-rich domain NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 Gene3D G3DSA:3.30.465.10 100 271 1.1E-34 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 582 593 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 535 546 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 Pfam PF13183 4Fe-4S dicluster domain 533 596 3.1E-8 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 SUPERFAMILY SSF46548 492 607 1.65E-12 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 SUPERFAMILY SSF55103 273 516 3.27E-51 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 Gene3D G3DSA:3.30.43.10 12 99 1.3E-19 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 Gene3D G3DSA:1.10.1060.10 507 608 4.3E-10 T 23-04-2016 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 Gene3D G3DSA:1.10.45.10 479 506 7.1E-6 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 PANTHER PTHR11748 224 514 1.2E-117 T 23-04-2016 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 PANTHER PTHR11748 6 186 1.2E-117 T 23-04-2016 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 Pfam PF02913 FAD linked oxidases, C-terminal domain 270 514 2.6E-52 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 NIDE_RS12095 98b6f99bfac4765836bbe9d5fc5dc65d 946 Pfam PF01565 FAD binding domain 46 181 3.1E-39 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 Gene3D G3DSA:3.30.70.260 260 316 7.4E-4 T 23-04-2016 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 Pfam PF13840 ACT domain 336 397 3.2E-16 T 23-04-2016 IPR027795 GATS-like ACT domain NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 PANTHER PTHR21499 3 411 4.4E-172 T 23-04-2016 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 23-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 Pfam PF00696 Amino acid kinase family 3 227 2.6E-53 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 PANTHER PTHR21499:SF27 3 411 4.4E-172 T 23-04-2016 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 Pfam PF01842 ACT domain 265 324 2.5E-11 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 62 401 4.2E-123 T 23-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 1.4E-6 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 1.4E-6 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 1.4E-6 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 SUPERFAMILY SSF53633 4 242 9.82E-76 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 Gene3D G3DSA:3.40.1160.10 3 246 2.7E-75 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 SUPERFAMILY SSF55021 326 404 1.45E-25 T 23-04-2016 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 SUPERFAMILY SSF55021 247 324 3.86E-21 T 23-04-2016 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 PIRSF PIRSF000726 54 408 3.3E-139 T 23-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 NIDE_RS18755 588cf879ce6ab4e30fed8223cae9a7e2 411 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 2 401 2.5E-136 T 23-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 NIDE_RS20105 531033298d6057f4bd2eb64ab48fe9dc 1015 Pfam PF05860 haemagglutination activity domain 67 159 4.3E-25 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS20105 531033298d6057f4bd2eb64ab48fe9dc 1015 PANTHER PTHR12338:SF6 50 296 8.0E-81 T 23-04-2016 NIDE_RS20105 531033298d6057f4bd2eb64ab48fe9dc 1015 PANTHER PTHR12338:SF6 327 576 8.0E-81 T 23-04-2016 NIDE_RS20105 531033298d6057f4bd2eb64ab48fe9dc 1015 SMART SM00912 48 160 5.7E-41 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS20105 531033298d6057f4bd2eb64ab48fe9dc 1015 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 82 155 2.5E-25 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS20105 531033298d6057f4bd2eb64ab48fe9dc 1015 PANTHER PTHR12338 50 296 8.0E-81 T 23-04-2016 NIDE_RS20105 531033298d6057f4bd2eb64ab48fe9dc 1015 PANTHER PTHR12338 327 576 8.0E-81 T 23-04-2016 NIDE_RS20105 531033298d6057f4bd2eb64ab48fe9dc 1015 Gene3D G3DSA:2.160.20.10 70 321 1.1E-17 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS20105 531033298d6057f4bd2eb64ab48fe9dc 1015 SUPERFAMILY SSF51126 48 354 2.89E-47 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS02960 ff08769a3c66ca724b12e47736eb9a6d 752 Gene3D G3DSA:2.170.130.10 37 175 2.9E-28 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02960 ff08769a3c66ca724b12e47736eb9a6d 752 SUPERFAMILY SSF56935 40 752 3.66E-99 T 23-04-2016 NIDE_RS02960 ff08769a3c66ca724b12e47736eb9a6d 752 Gene3D G3DSA:2.40.170.20 176 752 2.9E-77 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS02960 ff08769a3c66ca724b12e47736eb9a6d 752 Pfam PF07715 TonB-dependent Receptor Plug Domain 69 174 7.2E-19 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02960 ff08769a3c66ca724b12e47736eb9a6d 752 PANTHER PTHR32552 475 752 5.7E-34 T 23-04-2016 NIDE_RS02960 ff08769a3c66ca724b12e47736eb9a6d 752 PANTHER PTHR32552 14 450 5.7E-34 T 23-04-2016 NIDE_RS02960 ff08769a3c66ca724b12e47736eb9a6d 752 Pfam PF00593 TonB dependent receptor 481 751 1.3E-26 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 23 156 4.3E-24 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 SUPERFAMILY SSF54980 320 405 9.71E-16 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 SMART SM00838 413 505 0.0023 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 23 621 1.8E-259 T 23-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 SUPERFAMILY SSF54980 416 534 9.11E-21 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 Gene3D G3DSA:3.40.50.300 19 224 8.7E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 Gene3D G3DSA:3.30.70.870 322 419 3.8E-35 T 23-04-2016 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 Gene3D G3DSA:2.40.30.10 225 321 5.4E-24 T 23-04-2016 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 PANTHER PTHR23115:SF14 6 615 4.5E-250 T 23-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 Pfam PF00679 Elongation factor G C-terminus 414 500 1.1E-17 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 SUPERFAMILY SSF52540 19 224 8.99E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 Gene3D G3DSA:2.40.50.250 507 599 6.5E-38 T 23-04-2016 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 PRINTS PR00315 GTP-binding elongation factor signature 89 99 4.7E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 PRINTS PR00315 GTP-binding elongation factor signature 105 116 4.7E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 PRINTS PR00315 GTP-binding elongation factor signature 25 38 4.7E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 PRINTS PR00315 GTP-binding elongation factor signature 69 77 4.7E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 PRINTS PR00315 GTP-binding elongation factor signature 141 150 4.7E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 PANTHER PTHR23115 6 615 4.5E-250 T 23-04-2016 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 Gene3D G3DSA:3.30.70.240 420 499 1.6E-21 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 62 77 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 Pfam PF00009 Elongation factor Tu GTP binding domain 22 213 1.3E-54 T 23-04-2016 NIDE_RS18375 b8a538e3929acf51c8d34f2c150d61c8 627 SUPERFAMILY SSF50447 169 317 1.09E-26 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 PANTHER PTHR24421:SF1 280 511 2.3E-43 T 23-04-2016 NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 PANTHER PTHR24421 280 511 2.3E-43 T 23-04-2016 NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 Pfam PF08448 PAS fold 148 255 9.2E-6 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 455 7.5E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 500 7.5E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 481 7.5E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 Pfam PF07730 Histidine kinase 299 366 2.9E-11 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 Gene3D G3DSA:3.30.565.10 412 504 7.9E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 SMART SM00091 139 206 1.2E-4 T 23-04-2016 IPR000014 PAS domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 SMART SM00091 3 68 0.78 T 23-04-2016 IPR000014 PAS domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 SUPERFAMILY SSF55874 367 500 6.42E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 SMART SM00086 89 131 3.9E-4 T 23-04-2016 IPR001610 PAC motif NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 SMART SM00086 211 253 12.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 SUPERFAMILY SSF55785 150 260 4.89E-17 T 23-04-2016 IPR000014 PAS domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 13 133 8.4E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 260 3.0E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 Gene3D G3DSA:3.30.450.20 144 252 6.0E-15 T 23-04-2016 NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 SUPERFAMILY SSF55785 13 124 1.45E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 SMART SM00387 405 503 3.4E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 407 500 1.1E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 Gene3D G3DSA:3.30.450.20 12 128 4.0E-15 T 23-04-2016 NIDE_RS20280 5de07e2df9a20f86d996e7a21bec1b50 511 Pfam PF13426 PAS domain 14 128 1.6E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS11315 8ae1596b46a93bab82e5a1ec61646d9e 158 Gene3D G3DSA:2.40.50.100 76 152 9.3E-29 T 23-04-2016 NIDE_RS11315 8ae1596b46a93bab82e5a1ec61646d9e 158 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 9 153 2.4E-43 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 NIDE_RS11315 8ae1596b46a93bab82e5a1ec61646d9e 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 114 127 7.5E-19 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 NIDE_RS11315 8ae1596b46a93bab82e5a1ec61646d9e 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 82 95 7.5E-19 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 NIDE_RS11315 8ae1596b46a93bab82e5a1ec61646d9e 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 99 113 7.5E-19 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 NIDE_RS11315 8ae1596b46a93bab82e5a1ec61646d9e 158 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 109 126 - T 23-04-2016 IPR001882 Biotin-binding site NIDE_RS11315 8ae1596b46a93bab82e5a1ec61646d9e 158 PANTHER PTHR23151 9 152 7.0E-37 T 23-04-2016 NIDE_RS11315 8ae1596b46a93bab82e5a1ec61646d9e 158 SUPERFAMILY SSF51230 78 153 3.66E-24 T 23-04-2016 IPR011053 Single hybrid motif NIDE_RS11315 8ae1596b46a93bab82e5a1ec61646d9e 158 Pfam PF00364 Biotin-requiring enzyme 79 152 4.4E-22 T 23-04-2016 IPR000089 Biotin/lipoyl attachment NIDE_RS11315 8ae1596b46a93bab82e5a1ec61646d9e 158 PANTHER PTHR23151:SF64 9 152 7.0E-37 T 23-04-2016 NIDE_RS10560 8851d30352e2590bc4a3028544117e68 288 Gene3D G3DSA:3.40.50.300 23 264 4.1E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10560 8851d30352e2590bc4a3028544117e68 288 PANTHER PTHR13696:SF3 11 276 3.2E-92 T 23-04-2016 NIDE_RS10560 8851d30352e2590bc4a3028544117e68 288 PIRSF PIRSF003092 8 288 1.4E-82 T 23-04-2016 IPR025501 ATP binding protein MinD NIDE_RS10560 8851d30352e2590bc4a3028544117e68 288 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 27 211 1.1E-24 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain NIDE_RS10560 8851d30352e2590bc4a3028544117e68 288 PANTHER PTHR13696 11 276 3.2E-92 T 23-04-2016 NIDE_RS10560 8851d30352e2590bc4a3028544117e68 288 SUPERFAMILY SSF52540 24 277 1.4E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 Hamap MF_01694 Biotin synthase [bioB]. 15 322 40.938 T 23-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 SMART SM00729 55 260 1.2E-32 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 Gene3D G3DSA:3.20.20.70 17 322 1.4E-87 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 PIRSF PIRSF001619 1 327 1.5E-114 T 23-04-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 231 320 6.6E-15 T 23-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 Pfam PF04055 Radical SAM superfamily 64 219 3.8E-18 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 PANTHER PTHR22976:SF1 7 322 5.7E-141 T 23-04-2016 NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 TIGRFAM TIGR00433 bioB: biotin synthase 27 320 5.1E-116 T 23-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 PANTHER PTHR22976 7 322 5.7E-141 T 23-04-2016 NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 SUPERFAMILY SSF102114 17 321 9.03E-73 T 23-04-2016 NIDE_RS05050 5a6048412b23818409c6269872753d3d 344 SMART SM00876 231 321 6.5E-29 T 23-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 Gene3D G3DSA:3.40.50.300 198 370 5.5E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 411 420 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 Gene3D G3DSA:3.30.450.40 3 178 2.1E-28 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 222 235 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 284 299 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 Gene3D G3DSA:1.10.10.60 448 503 7.2E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 SMART SM00382 218 362 5.3E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 SUPERFAMILY SSF46689 409 503 2.6E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 PANTHER PTHR32071 158 514 1.4E-151 T 23-04-2016 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 SUPERFAMILY SSF52540 198 438 2.09E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 Pfam PF02954 Bacterial regulatory protein, Fis family 458 501 1.7E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 Pfam PF00158 Sigma-54 interaction domain 199 364 6.3E-69 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 SMART SM00065 23 172 4.3E-19 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 Gene3D G3DSA:1.10.8.60 371 446 6.0E-25 T 23-04-2016 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 Pfam PF13185 GAF domain 22 163 3.2E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS06820 fa5fa55ff48c2c6dd569bc1c4c5af177 517 SUPERFAMILY SSF55781 9 185 6.54E-27 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS16375 e97136fb946caacc84e422587681fa4e 238 SUPERFAMILY SSF53448 1 219 2.6E-33 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS16375 e97136fb946caacc84e422587681fa4e 238 Gene3D G3DSA:3.90.550.10 2 195 2.3E-23 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS16375 e97136fb946caacc84e422587681fa4e 238 PANTHER PTHR10859 1 186 2.4E-28 T 23-04-2016 NIDE_RS16375 e97136fb946caacc84e422587681fa4e 238 TIGRFAM TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-associated 3 234 1.4E-75 T 23-04-2016 IPR026461 Transferase 2, rSAM/selenodomain-associated NIDE_RS16375 e97136fb946caacc84e422587681fa4e 238 PANTHER PTHR10859:SF92 1 186 2.4E-28 T 23-04-2016 NIDE_RS16375 e97136fb946caacc84e422587681fa4e 238 Pfam PF00535 Glycosyl transferase family 2 5 167 4.6E-14 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS20940 52edaa2b0b1fb9320ccea581c5b88955 396 Pfam PF13439 Glycosyltransferase Family 4 14 179 1.3E-19 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS20940 52edaa2b0b1fb9320ccea581c5b88955 396 SUPERFAMILY SSF53756 4 375 6.91E-78 T 23-04-2016 NIDE_RS20940 52edaa2b0b1fb9320ccea581c5b88955 396 Gene3D G3DSA:3.40.50.2000 167 352 3.9E-26 T 23-04-2016 NIDE_RS20940 52edaa2b0b1fb9320ccea581c5b88955 396 Gene3D G3DSA:3.40.50.2000 65 116 3.8E-5 T 23-04-2016 NIDE_RS20940 52edaa2b0b1fb9320ccea581c5b88955 396 PANTHER PTHR12526 2 395 3.2E-49 T 23-04-2016 NIDE_RS20940 52edaa2b0b1fb9320ccea581c5b88955 396 Pfam PF00534 Glycosyl transferases group 1 192 354 1.9E-30 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 Pfam PF00733 Asparagine synthase 222 612 4.1E-84 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 Pfam PF13537 Glutamine amidotransferase domain 28 146 9.3E-43 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 SUPERFAMILY SSF56235 1 199 1.97E-54 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 SUPERFAMILY SSF52402 468 608 8.87E-73 T 23-04-2016 NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 SUPERFAMILY SSF52402 213 363 8.87E-73 T 23-04-2016 NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 PANTHER PTHR11772:SF10 461 624 1.9E-136 T 23-04-2016 NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 PANTHER PTHR11772:SF10 1 365 1.9E-136 T 23-04-2016 NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 Gene3D G3DSA:3.40.50.620 206 359 2.7E-77 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 Gene3D G3DSA:3.40.50.620 463 612 2.7E-77 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 PANTHER PTHR11772 461 624 1.9E-136 T 23-04-2016 NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 PANTHER PTHR11772 1 365 1.9E-136 T 23-04-2016 NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 Gene3D G3DSA:3.60.20.10 1 205 4.6E-61 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 PIRSF PIRSF001589 1 625 3.7E-156 T 23-04-2016 NIDE_RS13710 ef682a06b04814c1046f010cfd5c23f2 633 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 1 548 2.1E-127 T 23-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 NIDE_RS02440 706e4b00eb8087944550f5c581d39551 266 PANTHER PTHR12737:SF20 3 265 4.3E-84 T 23-04-2016 NIDE_RS02440 706e4b00eb8087944550f5c581d39551 266 PANTHER PTHR12737 3 265 4.3E-84 T 23-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 NIDE_RS02440 706e4b00eb8087944550f5c581d39551 266 SUPERFAMILY SSF55909 3 265 1.22E-54 T 23-04-2016 NIDE_RS02440 706e4b00eb8087944550f5c581d39551 266 Pfam PF02274 Amidinotransferase 24 263 9.8E-22 T 23-04-2016 NIDE_RS02440 706e4b00eb8087944550f5c581d39551 266 Gene3D G3DSA:3.75.10.10 2 265 2.0E-61 T 23-04-2016 NIDE_RS13795 ddec6785645c46360c56f93786fd4b04 335 PANTHER PTHR10366:SF32 2 322 6.5E-214 T 23-04-2016 NIDE_RS13795 ddec6785645c46360c56f93786fd4b04 335 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 1 325 57.046 T 23-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 NIDE_RS13795 ddec6785645c46360c56f93786fd4b04 335 PANTHER PTHR10366 2 322 6.5E-214 T 23-04-2016 NIDE_RS13795 ddec6785645c46360c56f93786fd4b04 335 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 3 321 4.2E-165 T 23-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 NIDE_RS13795 ddec6785645c46360c56f93786fd4b04 335 SUPERFAMILY SSF51735 1 321 4.69E-82 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13795 ddec6785645c46360c56f93786fd4b04 335 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 314 1.5E-145 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13795 ddec6785645c46360c56f93786fd4b04 335 Gene3D G3DSA:3.90.25.10 197 324 1.0E-49 T 23-04-2016 NIDE_RS13795 ddec6785645c46360c56f93786fd4b04 335 Gene3D G3DSA:3.40.50.720 1 196 7.1E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 2 222 9.1E-100 T 23-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 Gene3D G3DSA:3.40.50.790 65 155 8.2E-41 T 23-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 ProSitePatterns PS01199 Ribosomal protein L1 signature. 117 135 - T 23-04-2016 IPR023673 Ribosomal protein L1, conserved site NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 Gene3D G3DSA:3.30.190.20 157 222 7.4E-44 T 23-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 Gene3D G3DSA:3.30.190.20 16 64 7.4E-44 T 23-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 1 225 42.28 T 23-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 Pfam PF00687 Ribosomal protein L1p/L10e family 27 216 1.3E-53 T 23-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 PIRSF PIRSF002155 1 222 4.9E-76 T 23-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 SUPERFAMILY SSF56808 13 221 6.93E-78 T 23-04-2016 IPR023674 Ribosomal protein L1-like NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 PANTHER PTHR23105:SF5 10 222 9.6E-79 T 23-04-2016 NIDE_RS06025 17274541267aa8a6202fad9bd16778e0 230 PANTHER PTHR23105 10 222 9.6E-79 T 23-04-2016 NIDE_RS07400 d905972430a528a6f68feb719b1c33cf 196 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 51 82 - T 23-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS07400 d905972430a528a6f68feb719b1c33cf 196 Pfam PF04542 Sigma-70 region 2 29 94 6.1E-21 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS07400 d905972430a528a6f68feb719b1c33cf 196 PANTHER PTHR30173 1 192 7.8E-47 T 23-04-2016 NIDE_RS07400 d905972430a528a6f68feb719b1c33cf 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 184 3.5E-31 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS07400 d905972430a528a6f68feb719b1c33cf 196 Gene3D G3DSA:1.10.10.10 123 187 7.2E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS07400 d905972430a528a6f68feb719b1c33cf 196 Pfam PF08281 Sigma-70, region 4 130 180 1.3E-12 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS07400 d905972430a528a6f68feb719b1c33cf 196 SUPERFAMILY SSF88946 8 108 8.16E-32 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS07400 d905972430a528a6f68feb719b1c33cf 196 SUPERFAMILY SSF88659 122 184 1.18E-11 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS07400 d905972430a528a6f68feb719b1c33cf 196 Gene3D G3DSA:1.10.1740.10 10 116 6.2E-35 T 23-04-2016 NIDE_RS07400 d905972430a528a6f68feb719b1c33cf 196 PANTHER PTHR30173:SF24 1 192 7.8E-47 T 23-04-2016 NIDE_RS07540 2e1f404de231d7511997038642273d59 218 Pfam PF00677 Lumazine binding domain 3 86 1.7E-19 T 23-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS07540 2e1f404de231d7511997038642273d59 218 Pfam PF00677 Lumazine binding domain 99 183 4.3E-20 T 23-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS07540 2e1f404de231d7511997038642273d59 218 SUPERFAMILY SSF63380 92 194 5.53E-33 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 NIDE_RS07540 2e1f404de231d7511997038642273d59 218 SUPERFAMILY SSF63380 1 92 1.02E-21 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 NIDE_RS07540 2e1f404de231d7511997038642273d59 218 PANTHER PTHR21098 1 194 2.0E-92 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS07540 2e1f404de231d7511997038642273d59 218 PIRSF PIRSF000498 1 200 1.6E-72 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS07540 2e1f404de231d7511997038642273d59 218 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 195 1.2E-66 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 NIDE_RS07540 2e1f404de231d7511997038642273d59 218 Gene3D G3DSA:2.40.30.20 5 103 3.2E-30 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS07540 2e1f404de231d7511997038642273d59 218 Gene3D G3DSA:2.40.30.20 104 194 3.1E-31 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS18055 665395d83d26fa60b20bbf4b26c0e2bc 234 PANTHER PTHR22936 1 233 9.4E-42 T 23-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 NIDE_RS18055 665395d83d26fa60b20bbf4b26c0e2bc 234 Gene3D G3DSA:1.20.1540.10 13 217 1.1E-46 T 23-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 NIDE_RS18055 665395d83d26fa60b20bbf4b26c0e2bc 234 Pfam PF01694 Rhomboid family 70 217 2.8E-39 T 23-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 NIDE_RS18055 665395d83d26fa60b20bbf4b26c0e2bc 234 SUPERFAMILY SSF144091 11 219 6.15E-45 T 23-04-2016 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 Gene3D G3DSA:3.40.50.2300 459 583 2.2E-35 T 23-04-2016 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 SUPERFAMILY SSF52172 462 583 9.25E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 PRINTS PR00344 Bacterial sensor protein C-terminal signature 224 238 3.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 PRINTS PR00344 Bacterial sensor protein C-terminal signature 283 296 3.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 PRINTS PR00344 Bacterial sensor protein C-terminal signature 242 252 3.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 PRINTS PR00344 Bacterial sensor protein C-terminal signature 259 277 3.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 Gene3D G3DSA:3.30.565.10 123 294 8.8E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 183 296 3.0E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 SUPERFAMILY SSF47384 55 137 1.1E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 Gene3D G3DSA:3.40.50.2300 313 442 3.2E-31 T 23-04-2016 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 Pfam PF00512 His Kinase A (phospho-acceptor) domain 71 136 2.7E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 SMART SM00448 464 580 2.6E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 SMART SM00448 317 435 6.1E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 SMART SM00387 183 299 1.0E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 SUPERFAMILY SSF55874 125 295 4.71E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 PANTHER PTHR24423:SF382 443 587 1.3E-146 T 23-04-2016 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 PANTHER PTHR24423:SF382 50 301 1.3E-146 T 23-04-2016 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 PANTHER PTHR24423 443 587 1.3E-146 T 23-04-2016 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 PANTHER PTHR24423 50 301 1.3E-146 T 23-04-2016 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 Pfam PF00072 Response regulator receiver domain 466 579 3.9E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 Pfam PF00072 Response regulator receiver domain 320 435 3.9E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 SUPERFAMILY SSF52172 314 441 6.97E-31 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 Gene3D G3DSA:1.10.287.130 68 122 7.3E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05670 bb8ce4eddc4db36375ae7557ef73f6ca 589 SMART SM00388 71 136 5.2E-25 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS04245 7896bf3aaf50c39f918df405467ab7f6 275 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 67 217 1.7E-17 T 23-04-2016 IPR008775 Phytanoyl-CoA dioxygenase NIDE_RS04245 7896bf3aaf50c39f918df405467ab7f6 275 PANTHER PTHR20883:SF5 68 257 6.0E-26 T 23-04-2016 NIDE_RS04245 7896bf3aaf50c39f918df405467ab7f6 275 PANTHER PTHR20883 68 257 6.0E-26 T 23-04-2016 NIDE_RS04245 7896bf3aaf50c39f918df405467ab7f6 275 SUPERFAMILY SSF51197 3 246 1.37E-42 T 23-04-2016 NIDE_RS04245 7896bf3aaf50c39f918df405467ab7f6 275 Gene3D G3DSA:2.60.120.620 4 235 8.1E-38 T 23-04-2016 NIDE_RS11055 f545eb16e329f5b5d67d58518eab21e3 240 SUPERFAMILY SSF52172 6 132 8.82E-35 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS11055 f545eb16e329f5b5d67d58518eab21e3 240 Gene3D G3DSA:3.40.50.2300 6 129 2.5E-34 T 23-04-2016 NIDE_RS11055 f545eb16e329f5b5d67d58518eab21e3 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 222 9.1E-6 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS11055 f545eb16e329f5b5d67d58518eab21e3 240 SMART SM00448 4 117 1.3E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS11055 f545eb16e329f5b5d67d58518eab21e3 240 PANTHER PTHR26402 4 207 6.8E-47 T 23-04-2016 NIDE_RS11055 f545eb16e329f5b5d67d58518eab21e3 240 Pfam PF00072 Response regulator receiver domain 6 118 6.1E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS11055 f545eb16e329f5b5d67d58518eab21e3 240 PANTHER PTHR26402:SF50 4 207 6.8E-47 T 23-04-2016 NIDE_RS11055 f545eb16e329f5b5d67d58518eab21e3 240 Gene3D G3DSA:1.10.10.10 136 226 2.6E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS11055 f545eb16e329f5b5d67d58518eab21e3 240 SUPERFAMILY SSF46894 132 224 2.07E-8 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS02175 34bc27d83217d363878034d124798303 340 Pfam PF07478 D-ala D-ala ligase C-terminus 125 328 9.8E-29 T 23-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS02175 34bc27d83217d363878034d124798303 340 Gene3D G3DSA:3.30.1490.20 114 192 2.6E-8 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS02175 34bc27d83217d363878034d124798303 340 PANTHER PTHR23132 29 333 2.5E-67 T 23-04-2016 NIDE_RS02175 34bc27d83217d363878034d124798303 340 Gene3D G3DSA:3.30.470.20 193 329 2.3E-31 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS02175 34bc27d83217d363878034d124798303 340 Gene3D G3DSA:3.30.470.20 101 113 2.3E-31 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS02175 34bc27d83217d363878034d124798303 340 SUPERFAMILY SSF56059 112 311 2.12E-32 T 23-04-2016 NIDE_RS02175 34bc27d83217d363878034d124798303 340 PANTHER PTHR23132:SF9 29 333 2.5E-67 T 23-04-2016 NIDE_RS02175 34bc27d83217d363878034d124798303 340 SUPERFAMILY SSF52440 30 112 4.89E-6 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 SMART SM00382 641 801 1.1E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 SMART SM00382 222 367 5.4E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 12 898 0.0 T 23-04-2016 IPR017729 Type VI secretion system, ATPase ClpV1 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 SUPERFAMILY SSF52540 590 877 8.36E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 PANTHER PTHR11638 1 145 0.0 T 23-04-2016 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 PANTHER PTHR11638 546 897 0.0 T 23-04-2016 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 PANTHER PTHR11638 165 525 0.0 T 23-04-2016 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 SUPERFAMILY SSF81923 11 133 8.14E-17 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 Gene3D G3DSA:1.10.8.60 826 900 5.2E-11 T 23-04-2016 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 Pfam PF07724 AAA domain (Cdc48 subfamily) 640 806 3.9E-40 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 Gene3D G3DSA:3.40.50.300 184 366 7.0E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 Gene3D G3DSA:1.10.1780.10 10 141 9.1E-19 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 SUPERFAMILY SSF52540 183 514 8.38E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 Gene3D G3DSA:1.10.8.60 370 452 4.1E-28 T 23-04-2016 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 227 359 2.4E-7 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 816 887 2.0E-12 T 23-04-2016 IPR019489 Clp ATPase, C-terminal NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 318 330 - T 23-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 Gene3D G3DSA:3.40.50.300 596 825 3.3E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 752 766 1.4E-32 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 645 663 1.4E-32 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 690 708 1.4E-32 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 719 737 1.4E-32 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 PANTHER PTHR11638:SF122 1 145 0.0 T 23-04-2016 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 PANTHER PTHR11638:SF122 546 897 0.0 T 23-04-2016 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 PANTHER PTHR11638:SF122 165 525 0.0 T 23-04-2016 NIDE_RS09080 2b027777219a5fa60b4263cddc05ec71 909 SMART SM01086 813 904 2.9E-11 T 23-04-2016 IPR019489 Clp ATPase, C-terminal NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 SUPERFAMILY SSF46565 4 121 2.22E-31 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 PANTHER PTHR24078:SF190 1 338 9.4E-88 T 23-04-2016 NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 SUPERFAMILY SSF49493 133 230 9.29E-17 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 PRINTS PR00625 DnaJ domain signature 46 66 1.3E-22 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 PRINTS PR00625 DnaJ domain signature 66 85 1.3E-22 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 PRINTS PR00625 DnaJ domain signature 27 42 1.3E-22 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 PRINTS PR00625 DnaJ domain signature 9 27 1.3E-22 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 ProSitePatterns PS00636 Nt-dnaJ domain signature. 51 70 - T 23-04-2016 IPR018253 DnaJ domain, conserved site NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 PANTHER PTHR24078 1 338 9.4E-88 T 23-04-2016 NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 4 342 26.729 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 SUPERFAMILY SSF49493 234 319 2.35E-18 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 Pfam PF00226 DnaJ domain 8 71 1.7E-24 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 Gene3D G3DSA:2.60.260.20 234 309 5.2E-16 T 23-04-2016 NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 SMART SM00271 6 66 2.3E-25 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 Pfam PF01556 DnaJ C terminal domain 135 308 8.2E-32 T 23-04-2016 IPR002939 Chaperone DnaJ, C-terminal NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 Gene3D G3DSA:1.10.287.110 4 119 5.9E-33 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS15560 520a1f0060978a6c2ed8f8fd3ca66644 343 Gene3D G3DSA:2.60.260.20 125 230 1.4E-20 T 23-04-2016 NIDE_RS00635 01416d13a890af153fb24b97788a2752 95 PANTHER PTHR33713 1 95 4.5E-30 T 23-04-2016 NIDE_RS00635 01416d13a890af153fb24b97788a2752 95 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 6 72 3.1E-16 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS00635 01416d13a890af153fb24b97788a2752 95 SUPERFAMILY SSF143120 6 78 2.22E-16 T 23-04-2016 NIDE_RS00635 01416d13a890af153fb24b97788a2752 95 PANTHER PTHR33713:SF2 1 95 4.5E-30 T 23-04-2016 NIDE_RS00635 01416d13a890af153fb24b97788a2752 95 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 9 60 6.9E-11 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS00635 01416d13a890af153fb24b97788a2752 95 Gene3D G3DSA:3.40.1620.10 9 54 6.0E-8 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS08255 d7876c687651f1c08c3786e3d77f3723 379 SUPERFAMILY SSF52540 23 258 4.8E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08255 d7876c687651f1c08c3786e3d77f3723 379 Pfam PF00005 ABC transporter 39 180 2.6E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS08255 d7876c687651f1c08c3786e3d77f3723 379 Gene3D G3DSA:3.40.50.300 15 248 1.2E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08255 d7876c687651f1c08c3786e3d77f3723 379 PANTHER PTHR24220 24 313 2.8E-123 T 23-04-2016 NIDE_RS08255 d7876c687651f1c08c3786e3d77f3723 379 Pfam PF08402 TOBE domain 299 377 1.7E-13 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 NIDE_RS08255 d7876c687651f1c08c3786e3d77f3723 379 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS08255 d7876c687651f1c08c3786e3d77f3723 379 PANTHER PTHR24220:SF150 24 313 2.8E-123 T 23-04-2016 NIDE_RS08255 d7876c687651f1c08c3786e3d77f3723 379 SMART SM00382 47 230 5.2E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS08255 d7876c687651f1c08c3786e3d77f3723 379 SUPERFAMILY SSF50331 277 377 2.93E-11 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal NIDE_RS17965 c4494747ff32b79469dd1d2332042226 439 PANTHER PTHR30572:SF1 81 365 4.0E-99 T 23-04-2016 NIDE_RS17965 c4494747ff32b79469dd1d2332042226 439 SUPERFAMILY SSF111369 95 344 7.19E-26 T 23-04-2016 NIDE_RS17965 c4494747ff32b79469dd1d2332042226 439 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 86 405 8.0E-47 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS17965 c4494747ff32b79469dd1d2332042226 439 Gene3D G3DSA:2.40.50.100 228 259 1.7E-15 T 23-04-2016 NIDE_RS17965 c4494747ff32b79469dd1d2332042226 439 Gene3D G3DSA:2.40.50.100 106 139 1.7E-15 T 23-04-2016 NIDE_RS17965 c4494747ff32b79469dd1d2332042226 439 PANTHER PTHR30572 81 365 4.0E-99 T 23-04-2016 NIDE_RS17965 c4494747ff32b79469dd1d2332042226 439 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 106 340 1.9E-22 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 SMART SM00998 349 429 1.0E-34 T 23-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 PANTHER PTHR11444:SF2 4 424 3.9E-148 T 23-04-2016 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 Pfam PF00206 Lyase 54 286 2.5E-49 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 Gene3D G3DSA:1.10.40.30 357 429 3.0E-30 T 23-04-2016 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 SUPERFAMILY SSF48557 3 429 7.54E-131 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 Gene3D G3DSA:1.10.275.10 2 90 1.7E-27 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 429 3.6E-161 T 23-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 PANTHER PTHR11444 4 424 3.9E-148 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 428 5.1E-23 T 23-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 4.8E-26 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 4.8E-26 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 4.8E-26 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 4.8E-26 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 6.2E-9 T 23-04-2016 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 6.2E-9 T 23-04-2016 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 6.2E-9 T 23-04-2016 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 6.2E-9 T 23-04-2016 NIDE_RS06425 3c6f18e47a0739f4f3b8055d26eabd85 444 Gene3D G3DSA:1.20.200.10 91 356 9.6E-90 T 23-04-2016 NIDE_RS08100 d9ce8db8d36268033143b77de9d3ae16 121 PANTHER PTHR26402 2 116 1.0E-28 T 23-04-2016 NIDE_RS08100 d9ce8db8d36268033143b77de9d3ae16 121 Pfam PF00072 Response regulator receiver domain 4 114 1.0E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08100 d9ce8db8d36268033143b77de9d3ae16 121 SUPERFAMILY SSF52172 1 119 2.56E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS08100 d9ce8db8d36268033143b77de9d3ae16 121 SMART SM00448 2 114 1.2E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08100 d9ce8db8d36268033143b77de9d3ae16 121 Gene3D G3DSA:3.40.50.2300 1 119 2.6E-32 T 23-04-2016 NIDE_RS19165 9721dbd3a2775036e58a6ee99b0dba05 183 Pfam PF04542 Sigma-70 region 2 14 78 2.9E-4 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS19165 9721dbd3a2775036e58a6ee99b0dba05 183 PANTHER PTHR30173 8 183 1.4E-23 T 23-04-2016 NIDE_RS19165 9721dbd3a2775036e58a6ee99b0dba05 183 Gene3D G3DSA:1.10.1740.10 6 80 4.9E-8 T 23-04-2016 NIDE_RS19165 9721dbd3a2775036e58a6ee99b0dba05 183 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 178 6.7E-22 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS19165 9721dbd3a2775036e58a6ee99b0dba05 183 Pfam PF08281 Sigma-70, region 4 123 172 1.0E-14 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS19165 9721dbd3a2775036e58a6ee99b0dba05 183 SUPERFAMILY SSF88946 7 95 1.69E-9 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS19165 9721dbd3a2775036e58a6ee99b0dba05 183 SUPERFAMILY SSF88659 91 180 9.16E-17 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS19165 9721dbd3a2775036e58a6ee99b0dba05 183 Gene3D G3DSA:1.10.10.10 119 179 4.7E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS14275 13e86137b99ac4e12659090549921900 385 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 167 378 1.4E-75 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 NIDE_RS14275 13e86137b99ac4e12659090549921900 385 Pfam PF00364 Biotin-requiring enzyme 4 76 3.0E-21 T 23-04-2016 IPR000089 Biotin/lipoyl attachment NIDE_RS14275 13e86137b99ac4e12659090549921900 385 SUPERFAMILY SSF47005 99 141 6.54E-12 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 NIDE_RS14275 13e86137b99ac4e12659090549921900 385 PANTHER PTHR23151 3 377 7.3E-139 T 23-04-2016 NIDE_RS14275 13e86137b99ac4e12659090549921900 385 SUPERFAMILY SSF51230 3 81 9.82E-25 T 23-04-2016 IPR011053 Single hybrid motif NIDE_RS14275 13e86137b99ac4e12659090549921900 385 Gene3D G3DSA:3.30.559.10 157 378 1.5E-75 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain NIDE_RS14275 13e86137b99ac4e12659090549921900 385 Gene3D G3DSA:2.40.50.100 3 80 3.5E-26 T 23-04-2016 NIDE_RS14275 13e86137b99ac4e12659090549921900 385 Pfam PF02817 e3 binding domain 104 138 1.5E-15 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 NIDE_RS14275 13e86137b99ac4e12659090549921900 385 Gene3D G3DSA:4.10.320.10 104 142 1.7E-17 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 NIDE_RS14275 13e86137b99ac4e12659090549921900 385 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site NIDE_RS14275 13e86137b99ac4e12659090549921900 385 SUPERFAMILY SSF52777 168 378 5.78E-79 T 23-04-2016 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 Gene3D G3DSA:1.25.40.10 173 244 1.2E-23 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 Gene3D G3DSA:1.25.40.10 367 465 1.7E-22 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 Pfam PF13414 TPR repeat 125 166 2.4E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 Pfam PF13414 TPR repeat 199 234 3.1E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 Pfam PF13414 TPR repeat 404 439 2.9E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 PANTHER PTHR23083 82 248 6.4E-81 T 23-04-2016 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 PANTHER PTHR23083 285 464 6.4E-81 T 23-04-2016 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 392 425 2.8E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 118 151 4.7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 152 185 1.1E-6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 220 253 0.13 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 426 459 5.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 84 117 0.0068 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 186 219 0.045 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 256 289 17.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 290 323 1.6E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 324 357 38.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SMART SM00028 358 391 0.91 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 Gene3D G3DSA:1.25.40.10 83 172 4.0E-23 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 Pfam PF13432 Tetratricopeptide repeat 264 322 5.9E-9 T 23-04-2016 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 Pfam PF13432 Tetratricopeptide repeat 328 391 2.0E-6 T 23-04-2016 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SUPERFAMILY SSF48452 261 462 1.14E-35 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 SUPERFAMILY SSF48452 84 252 9.48E-38 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 Gene3D G3DSA:1.25.40.10 245 366 1.8E-27 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14360 74fc0230832476f737e9a54b6e8d2cd6 478 Pfam PF13174 Tetratricopeptide repeat 85 113 0.071 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 SUPERFAMILY SSF54534 81 154 4.19E-21 T 23-04-2016 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 1 154 30.521 T 23-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 PIRSF PIRSF006092 1 157 2.5E-50 T 23-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 PANTHER PTHR30437 2 156 9.2E-58 T 23-04-2016 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 73 4.1E-32 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 Gene3D G3DSA:3.10.50.30 80 155 3.8E-27 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 154 1.7E-24 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 SUPERFAMILY SSF46557 3 76 1.26E-27 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 119 135 - T 23-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 4 153 1.4E-53 T 23-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 16 47 - T 23-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 NIDE_RS11680 ca0eec2da7d2c72d4a23e057c47fdcd4 158 Gene3D G3DSA:1.10.287.180 3 74 9.3E-33 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 Hamap MF_00328 Guanylate kinase [gmk]. 16 199 35.94 T 23-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 19 196 1.3E-70 T 23-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 PANTHER PTHR23117 6 230 3.8E-86 T 23-04-2016 NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 Gene3D G3DSA:3.40.50.300 8 61 1.8E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 Gene3D G3DSA:3.40.50.300 100 210 2.5E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 Pfam PF00625 Guanylate kinase 21 196 8.3E-43 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 Gene3D G3DSA:3.30.63.10 62 99 9.9E-27 T 23-04-2016 NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 SMART SM00072 17 199 5.0E-54 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 SUPERFAMILY SSF52540 17 202 2.51E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 ProSitePatterns PS00856 Guanylate kinase-like signature. 52 69 - T 23-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 NIDE_RS11285 805e7e9e59ae7a0d396d3fc55e5f2dc6 238 PANTHER PTHR23117:SF13 6 230 3.8E-86 T 23-04-2016 NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 SUPERFAMILY SSF82771 16 100 3.92E-20 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 Gene3D G3DSA:1.10.150.20 548 599 2.0E-11 T 23-04-2016 NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 SUPERFAMILY SSF47781 507 599 1.08E-15 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 Gene3D G3DSA:3.40.1440.10 16 95 1.3E-6 T 23-04-2016 IPR027299 GIY-YIG domain NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 383 533 6.8E-50 T 23-04-2016 IPR001162 UvrC family homology region NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 SMART SM00465 16 98 6.4E-18 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 Pfam PF01541 GIY-YIG catalytic domain 17 91 9.0E-7 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 SUPERFAMILY SSF46600 190 243 5.49E-11 T 23-04-2016 IPR001943 UVR domain GO:0005515 NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 PANTHER PTHR30562:SF1 4 599 1.1E-237 T 23-04-2016 NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 Pfam PF02151 UvrB/uvrC motif 205 237 3.4E-8 T 23-04-2016 IPR001943 UVR domain GO:0005515 NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 Gene3D G3DSA:4.10.860.10 184 243 4.4E-14 T 23-04-2016 IPR001943 UVR domain GO:0005515 NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 PANTHER PTHR30562 4 599 1.1E-237 T 23-04-2016 NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 Hamap MF_00203 UvrABC system protein C [uvrC]. 3 598 27.697 T 23-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 NIDE_RS02750 38767984f5eaded26903cca01f9068c4 602 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 7 580 4.2E-174 T 23-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 NIDE_RS03780 1c4e2b01faefcdabb41cdae180a125b9 299 Gene3D G3DSA:3.40.50.970 33 272 3.7E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS03780 1c4e2b01faefcdabb41cdae180a125b9 299 SUPERFAMILY SSF52518 41 278 8.84E-48 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS03780 1c4e2b01faefcdabb41cdae180a125b9 299 PANTHER PTHR32154 1 278 3.3E-90 T 23-04-2016 NIDE_RS03780 1c4e2b01faefcdabb41cdae180a125b9 299 PANTHER PTHR32154:SF4 1 278 3.3E-90 T 23-04-2016 NIDE_RS03780 1c4e2b01faefcdabb41cdae180a125b9 299 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 92 233 4.9E-22 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NIDE_RS14800 e081e2a0782a05fed3b000f4e2bd5374 366 SUPERFAMILY SSF111369 36 83 8.24E-7 T 23-04-2016 NIDE_RS14800 e081e2a0782a05fed3b000f4e2bd5374 366 SUPERFAMILY SSF111369 112 171 8.24E-7 T 23-04-2016 NIDE_RS14800 e081e2a0782a05fed3b000f4e2bd5374 366 Gene3D G3DSA:2.40.50.100 191 224 1.4E-16 T 23-04-2016 NIDE_RS14800 e081e2a0782a05fed3b000f4e2bd5374 366 Gene3D G3DSA:2.40.50.100 38 70 1.4E-16 T 23-04-2016 NIDE_RS14800 e081e2a0782a05fed3b000f4e2bd5374 366 Pfam PF13437 HlyD family secretion protein 194 314 5.9E-17 T 23-04-2016 NIDE_RS14800 e081e2a0782a05fed3b000f4e2bd5374 366 PANTHER PTHR30386 6 352 1.2E-95 T 23-04-2016 NIDE_RS14800 e081e2a0782a05fed3b000f4e2bd5374 366 SUPERFAMILY SSF111369 174 244 3.01E-6 T 23-04-2016 NIDE_RS14800 e081e2a0782a05fed3b000f4e2bd5374 366 Pfam PF13533 Biotin-lipoyl like 38 81 1.4E-6 T 23-04-2016 NIDE_RS14800 e081e2a0782a05fed3b000f4e2bd5374 366 PANTHER PTHR30386:SF6 6 352 1.2E-95 T 23-04-2016 NIDE_RS09395 b15aad819005974df5edc04f589a0834 544 Pfam PF00795 Carbon-nitrogen hydrolase 233 495 9.5E-31 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS09395 b15aad819005974df5edc04f589a0834 544 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 61 479 1.5E-99 T 23-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 NIDE_RS09395 b15aad819005974df5edc04f589a0834 544 PANTHER PTHR38686 1 383 3.4E-78 T 23-04-2016 NIDE_RS09395 b15aad819005974df5edc04f589a0834 544 PANTHER PTHR38686 400 535 3.4E-78 T 23-04-2016 NIDE_RS09395 b15aad819005974df5edc04f589a0834 544 Gene3D G3DSA:3.60.110.10 223 509 2.2E-41 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS09395 b15aad819005974df5edc04f589a0834 544 SUPERFAMILY SSF56317 225 510 2.49E-51 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS09395 b15aad819005974df5edc04f589a0834 544 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 5 516 21.568 T 23-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 NIDE_RS17990 ed5bd4c6f45f9f232bbbf54faa6fccf5 290 PANTHER PTHR10949 1 288 3.2E-151 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 NIDE_RS17990 ed5bd4c6f45f9f232bbbf54faa6fccf5 290 SUPERFAMILY SSF102114 24 285 2.75E-66 T 23-04-2016 NIDE_RS17990 ed5bd4c6f45f9f232bbbf54faa6fccf5 290 SMART SM00729 59 262 4.8E-9 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS17990 ed5bd4c6f45f9f232bbbf54faa6fccf5 290 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 10 48 3.2E-13 T 23-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 NIDE_RS17990 ed5bd4c6f45f9f232bbbf54faa6fccf5 290 Pfam PF04055 Radical SAM superfamily 66 223 1.8E-10 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS17990 ed5bd4c6f45f9f232bbbf54faa6fccf5 290 TIGRFAM TIGR00510 lipA: lipoyl synthase 7 285 1.9E-109 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 NIDE_RS17990 ed5bd4c6f45f9f232bbbf54faa6fccf5 290 Gene3D G3DSA:3.20.20.70 25 285 6.4E-68 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS17990 ed5bd4c6f45f9f232bbbf54faa6fccf5 290 Hamap MF_00206 Lipoyl synthase [lipA]. 1 290 139.225 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 NIDE_RS17990 ed5bd4c6f45f9f232bbbf54faa6fccf5 290 PIRSF PIRSF005963 1 290 3.9E-128 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 NIDE_RS08585 4540fb3815cd03ed555cf31ba7d894b9 982 Pfam PF05359 Domain of Unknown Function (DUF748) 151 302 2.0E-21 T 23-04-2016 IPR008023 Protein of unknown function DUF748 NIDE_RS08585 4540fb3815cd03ed555cf31ba7d894b9 982 Pfam PF05359 Domain of Unknown Function (DUF748) 590 735 1.4E-34 T 23-04-2016 IPR008023 Protein of unknown function DUF748 NIDE_RS08585 4540fb3815cd03ed555cf31ba7d894b9 982 Pfam PF05359 Domain of Unknown Function (DUF748) 367 518 8.3E-30 T 23-04-2016 IPR008023 Protein of unknown function DUF748 NIDE_RS08585 4540fb3815cd03ed555cf31ba7d894b9 982 Gene3D G3DSA:3.30.1330.60 803 845 5.6E-7 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS08585 4540fb3815cd03ed555cf31ba7d894b9 982 Gene3D G3DSA:3.30.1330.60 928 958 5.6E-7 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS05025 288b026ab260287efc3d74a95e395394 183 PANTHER PTHR11907:SF9 2 161 1.3E-41 T 23-04-2016 NIDE_RS05025 288b026ab260287efc3d74a95e395394 183 PANTHER PTHR11907 2 161 1.3E-41 T 23-04-2016 NIDE_RS05025 288b026ab260287efc3d74a95e395394 183 SUPERFAMILY SSF53271 8 160 4.72E-27 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS05025 288b026ab260287efc3d74a95e395394 183 Pfam PF00156 Phosphoribosyl transferase domain 65 165 6.8E-11 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 NIDE_RS05025 288b026ab260287efc3d74a95e395394 183 Gene3D G3DSA:3.40.50.2020 13 161 1.7E-30 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS10555 11375b5a83cc0a4b69d9acabc1e5a740 427 SMART SM00962 205 396 2.2E-26 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS10555 11375b5a83cc0a4b69d9acabc1e5a740 427 Pfam PF00448 SRP54-type protein, GTPase domain 206 395 1.2E-31 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 NIDE_RS10555 11375b5a83cc0a4b69d9acabc1e5a740 427 SMART SM00382 204 359 8.8E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10555 11375b5a83cc0a4b69d9acabc1e5a740 427 PANTHER PTHR11564:SF3 164 396 2.9E-49 T 23-04-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 NIDE_RS10555 11375b5a83cc0a4b69d9acabc1e5a740 427 SUPERFAMILY SSF52540 202 396 9.0E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10555 11375b5a83cc0a4b69d9acabc1e5a740 427 Gene3D G3DSA:1.20.120.140 145 216 2.8E-7 T 23-04-2016 NIDE_RS10555 11375b5a83cc0a4b69d9acabc1e5a740 427 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 292 5.7E-58 T 23-04-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 NIDE_RS10555 11375b5a83cc0a4b69d9acabc1e5a740 427 Gene3D G3DSA:3.40.50.300 217 396 1.3E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10555 11375b5a83cc0a4b69d9acabc1e5a740 427 PANTHER PTHR11564 164 396 2.9E-49 T 23-04-2016 NIDE_RS14350 a60816fddaa27bfe0904fd6efbff2e28 308 SUPERFAMILY SSF50182 122 183 3.27E-11 T 23-04-2016 IPR010920 LSM domain NIDE_RS14350 a60816fddaa27bfe0904fd6efbff2e28 308 Pfam PF00924 Mechanosensitive ion channel 79 279 7.9E-43 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 NIDE_RS14350 a60816fddaa27bfe0904fd6efbff2e28 308 PANTHER PTHR30460:SF0 53 293 4.4E-83 T 23-04-2016 NIDE_RS14350 a60816fddaa27bfe0904fd6efbff2e28 308 Gene3D G3DSA:2.30.30.60 138 178 1.4E-8 T 23-04-2016 NIDE_RS14350 a60816fddaa27bfe0904fd6efbff2e28 308 SUPERFAMILY SSF82689 185 288 4.05E-25 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 NIDE_RS14350 a60816fddaa27bfe0904fd6efbff2e28 308 SUPERFAMILY SSF82861 68 120 9.94E-11 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 NIDE_RS14350 a60816fddaa27bfe0904fd6efbff2e28 308 Gene3D G3DSA:3.30.70.100 192 277 2.0E-15 T 23-04-2016 NIDE_RS14350 a60816fddaa27bfe0904fd6efbff2e28 308 PANTHER PTHR30460 53 293 4.4E-83 T 23-04-2016 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 SUPERFAMILY SSF47323 627 811 1.31E-32 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 Pfam PF08264 Anticodon-binding domain of tRNA 664 773 3.5E-15 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PANTHER PTHR11946:SF7 1 207 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PANTHER PTHR11946:SF7 240 265 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PANTHER PTHR11946:SF7 478 811 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PANTHER PTHR11946:SF7 288 460 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 422 611 6.6E-18 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 SUPERFAMILY SSF52374 421 633 4.17E-133 T 23-04-2016 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 SUPERFAMILY SSF52374 4 226 4.17E-133 T 23-04-2016 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PANTHER PTHR11946 1 207 0.0 T 23-04-2016 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PANTHER PTHR11946 240 265 0.0 T 23-04-2016 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PANTHER PTHR11946 478 811 0.0 T 23-04-2016 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PANTHER PTHR11946 288 460 0.0 T 23-04-2016 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 Gene3D G3DSA:3.90.740.10 223 429 1.4E-54 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 Gene3D G3DSA:1.10.730.10 614 749 1.8E-37 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 Pfam PF09334 tRNA synthetases class I (M) 41 172 9.9E-19 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 5.9E-55 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PRINTS PR00985 Leucyl-tRNA synthetase signature 494 512 5.9E-55 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PRINTS PR00985 Leucyl-tRNA synthetase signature 154 170 5.9E-55 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PRINTS PR00985 Leucyl-tRNA synthetase signature 566 576 5.9E-55 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PRINTS PR00985 Leucyl-tRNA synthetase signature 186 199 5.9E-55 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PRINTS PR00985 Leucyl-tRNA synthetase signature 128 145 5.9E-55 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 PRINTS PR00985 Leucyl-tRNA synthetase signature 533 555 5.9E-55 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 Gene3D G3DSA:3.40.50.620 3 222 3.7E-154 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 Gene3D G3DSA:3.40.50.620 430 613 3.7E-154 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 811 22.56 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 811 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 389 4.3E-63 T 23-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 NIDE_RS19325 216c703034beba9ebb0cccfd863d2707 811 SUPERFAMILY SSF50677 226 420 2.41E-49 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 NIDE_RS18420 bb4f9a4711b717bef9c4ab14a9c29845 428 PANTHER PTHR32479 15 419 5.3E-43 T 23-04-2016 NIDE_RS18420 bb4f9a4711b717bef9c4ab14a9c29845 428 Gene3D G3DSA:3.30.70.20 23 81 2.3E-6 T 23-04-2016 NIDE_RS18420 bb4f9a4711b717bef9c4ab14a9c29845 428 Pfam PF02754 Cysteine-rich domain 313 394 9.0E-6 T 23-04-2016 IPR004017 Cysteine-rich domain NIDE_RS18420 bb4f9a4711b717bef9c4ab14a9c29845 428 Pfam PF02754 Cysteine-rich domain 184 266 3.3E-12 T 23-04-2016 IPR004017 Cysteine-rich domain NIDE_RS18420 bb4f9a4711b717bef9c4ab14a9c29845 428 SUPERFAMILY SSF54862 21 82 5.5E-9 T 23-04-2016 NIDE_RS18420 bb4f9a4711b717bef9c4ab14a9c29845 428 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 68 79 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS18420 bb4f9a4711b717bef9c4ab14a9c29845 428 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 26 37 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS18420 bb4f9a4711b717bef9c4ab14a9c29845 428 PANTHER PTHR32479:SF9 15 419 5.3E-43 T 23-04-2016 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 SUPERFAMILY SSF55874 469 647 1.03E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 SUPERFAMILY SSF47384 404 476 5.49E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 SMART SM00388 413 479 2.6E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 SUPERFAMILY SSF55785 264 396 2.97E-19 T 23-04-2016 IPR000014 PAS domain NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 SMART SM00387 520 643 2.4E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 PANTHER PTHR24423 277 782 2.5E-154 T 23-04-2016 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 PANTHER PTHR24423 224 243 2.5E-154 T 23-04-2016 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 SMART SM00086 356 398 3.3E-6 T 23-04-2016 IPR001610 PAC motif NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 Gene3D G3DSA:1.10.287.130 406 475 1.1E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 276 405 1.3E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 PANTHER PTHR24423:SF458 277 782 2.5E-154 T 23-04-2016 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 PANTHER PTHR24423:SF458 224 243 2.5E-154 T 23-04-2016 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 521 641 1.9E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 SUPERFAMILY SSF52172 665 781 1.71E-31 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 627 640 1.9E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 586 1.9E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 603 621 1.9E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 590 600 1.9E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 Gene3D G3DSA:3.30.450.20 271 396 1.1E-23 T 23-04-2016 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 SMART SM00448 663 776 7.9E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 Pfam PF08447 PAS fold 303 391 2.8E-18 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 Pfam PF00512 His Kinase A (phospho-acceptor) domain 414 477 3.4E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 Gene3D G3DSA:3.40.50.2300 664 782 9.8E-33 T 23-04-2016 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 Pfam PF00072 Response regulator receiver domain 665 776 9.0E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 Gene3D G3DSA:3.30.565.10 479 640 5.3E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20985 3b25c1920be5813fa778287aeea751b3 786 SMART SM00091 279 348 5.7E-5 T 23-04-2016 IPR000014 PAS domain NIDE_RS10490 3cb6ccafa023b1f9c7cfbe985a2848a3 414 Pfam PF02120 Flagellar hook-length control protein FliK 294 364 4.5E-10 T 23-04-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal NIDE_RS04070 126d7547e4392dd309aaf301f9c6c8a5 252 Pfam PF08241 Methyltransferase domain 77 174 1.2E-18 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS04070 126d7547e4392dd309aaf301f9c6c8a5 252 PANTHER PTHR10108 41 187 1.0E-19 T 23-04-2016 NIDE_RS04070 126d7547e4392dd309aaf301f9c6c8a5 252 SUPERFAMILY SSF53335 37 203 5.36E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS04070 126d7547e4392dd309aaf301f9c6c8a5 252 Gene3D G3DSA:3.40.50.150 54 187 7.0E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20580 5d4d3344b2d0bc56f1ac83b2118f9a1a 223 Gene3D G3DSA:3.40.50.1110 10 205 3.9E-35 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS20580 5d4d3344b2d0bc56f1ac83b2118f9a1a 223 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 12 196 1.4E-26 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS20580 5d4d3344b2d0bc56f1ac83b2118f9a1a 223 SUPERFAMILY SSF52266 10 205 3.52E-34 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS20580 5d4d3344b2d0bc56f1ac83b2118f9a1a 223 PANTHER PTHR30383:SF3 10 206 2.1E-22 T 23-04-2016 NIDE_RS20580 5d4d3344b2d0bc56f1ac83b2118f9a1a 223 PANTHER PTHR30383 10 206 2.1E-22 T 23-04-2016 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Gene3D G3DSA:1.10.10.400 224 312 2.8E-19 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 240 316 2.7E-13 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 PIRSF PIRSF005499 1 701 8.4E-303 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Gene3D G3DSA:3.30.1370.10 549 614 1.9E-25 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 SUPERFAMILY SSF54211 4 142 8.6E-50 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 SUPERFAMILY SSF50249 617 694 6.27E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Gene3D G3DSA:2.40.50.140 615 689 1.7E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Gene3D G3DSA:3.30.230.70 313 539 1.5E-86 T 23-04-2016 IPR027408 PNPase/RNase PH domain NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Gene3D G3DSA:3.30.230.70 6 221 3.9E-85 T 23-04-2016 IPR027408 PNPase/RNase PH domain NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Pfam PF00575 S1 RNA binding domain 616 687 8.7E-18 T 23-04-2016 IPR003029 S1 domain GO:0003676 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 SUPERFAMILY SSF55666 143 229 3.27E-28 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 SMART SM00322 549 614 6.2E-11 T 23-04-2016 IPR004087 K Homology domain GO:0003676 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 SUPERFAMILY SSF54211 294 485 1.67E-50 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Pfam PF03725 3' exoribonuclease family, domain 2 145 208 2.3E-15 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Pfam PF03725 3' exoribonuclease family, domain 2 457 525 1.9E-6 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 PANTHER PTHR11252:SF0 2 691 0.0 T 23-04-2016 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 PANTHER PTHR11252 2 691 0.0 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 SUPERFAMILY SSF46915 237 317 2.01E-15 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 1 690 31.142 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 SUPERFAMILY SSF54791 552 637 7.59E-23 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 SUPERFAMILY SSF55666 450 557 3.8E-27 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 688 0.0 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 SMART SM00316 617 687 6.6E-23 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Pfam PF00013 KH domain 555 610 1.7E-11 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Pfam PF01138 3' exoribonuclease family, domain 1 12 142 6.6E-21 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 NIDE_RS18820 c63ec09522612b1d523b6046b101a991 705 Pfam PF01138 3' exoribonuclease family, domain 1 321 453 1.3E-24 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 NIDE_RS17415 c326998e7c3072c514a573e17fd9a73a 329 PANTHER PTHR33393:SF2 1 260 1.9E-41 T 23-04-2016 NIDE_RS17415 c326998e7c3072c514a573e17fd9a73a 329 PANTHER PTHR33393 1 260 1.9E-41 T 23-04-2016 NIDE_RS17415 c326998e7c3072c514a573e17fd9a73a 329 SMART SM00854 2 253 2.7E-75 T 23-04-2016 IPR019079 Capsule synthesis protein, CapA NIDE_RS17415 c326998e7c3072c514a573e17fd9a73a 329 Gene3D G3DSA:3.60.21.30 27 247 4.9E-9 T 23-04-2016 NIDE_RS17415 c326998e7c3072c514a573e17fd9a73a 329 SUPERFAMILY SSF56300 1 289 5.15E-28 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like NIDE_RS17415 c326998e7c3072c514a573e17fd9a73a 329 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 3 253 1.8E-68 T 23-04-2016 IPR019079 Capsule synthesis protein, CapA NIDE_RS15335 fe79fc12a0ac507afecb229c4331ef34 299 SUPERFAMILY SSF53167 11 274 2.09E-97 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 NIDE_RS15335 fe79fc12a0ac507afecb229c4331ef34 299 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 58 98 - T 23-04-2016 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 NIDE_RS15335 fe79fc12a0ac507afecb229c4331ef34 299 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 10 270 44.99 T 23-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 NIDE_RS15335 fe79fc12a0ac507afecb229c4331ef34 299 TIGRFAM TIGR01694 MTAP: methylthioadenosine phosphorylase 12 251 1.4E-101 T 23-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 NIDE_RS15335 fe79fc12a0ac507afecb229c4331ef34 299 PANTHER PTHR11904:SF1 9 297 4.9E-139 T 23-04-2016 NIDE_RS15335 fe79fc12a0ac507afecb229c4331ef34 299 PANTHER PTHR11904 9 297 4.9E-139 T 23-04-2016 IPR001369 PNP/MTAP phosphorylase NIDE_RS15335 fe79fc12a0ac507afecb229c4331ef34 299 Gene3D G3DSA:3.40.50.1580 9 268 4.1E-97 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 NIDE_RS15335 fe79fc12a0ac507afecb229c4331ef34 299 Pfam PF01048 Phosphorylase superfamily 12 250 1.3E-46 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 SMART SM00388 170 236 1.4E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 SUPERFAMILY SSF55874 226 393 4.45E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 PANTHER PTHR24423:SF445 153 392 6.6E-71 T 23-04-2016 NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 Gene3D G3DSA:3.30.450.40 5 159 2.1E-7 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 Gene3D G3DSA:1.10.287.130 163 231 4.6E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 393 3.1E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 SMART SM00387 278 395 2.2E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 349 1.3E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 392 1.3E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 321 335 1.3E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 373 1.3E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 Pfam PF00512 His Kinase A (phospho-acceptor) domain 174 232 7.4E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 PANTHER PTHR24423 153 392 6.6E-71 T 23-04-2016 NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 SUPERFAMILY SSF55781 17 158 3.68E-12 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 Gene3D G3DSA:3.30.565.10 236 393 1.3E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20435 93b200dc10b13724deba4607393a8c67 405 SUPERFAMILY SSF47384 163 232 7.85E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05570 847e1f82cda637a752af5053a94a9d70 151 Pfam PF01833 IPT/TIG domain 66 142 3.1E-8 T 23-04-2016 IPR002909 IPT domain GO:0005515 NIDE_RS05570 847e1f82cda637a752af5053a94a9d70 151 Gene3D G3DSA:2.60.40.10 65 143 4.3E-11 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS05570 847e1f82cda637a752af5053a94a9d70 151 SUPERFAMILY SSF81296 65 143 4.82E-11 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS14220 3996854dee40b767efc11b6cca7af114 255 PANTHER PTHR11941 5 252 5.0E-97 T 23-04-2016 NIDE_RS14220 3996854dee40b767efc11b6cca7af114 255 Gene3D G3DSA:3.90.226.10 3 252 2.1E-90 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS14220 3996854dee40b767efc11b6cca7af114 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 254 1.5E-69 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 NIDE_RS14220 3996854dee40b767efc11b6cca7af114 255 SUPERFAMILY SSF52096 3 253 1.61E-88 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS14220 3996854dee40b767efc11b6cca7af114 255 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 96 116 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 NIDE_RS11775 3c7488d0750ca75782d3b9bd3d149089 190 SUPERFAMILY SSF53335 1 180 1.27E-47 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS11775 3c7488d0750ca75782d3b9bd3d149089 190 PANTHER PTHR18895:SF60 1 178 6.0E-45 T 23-04-2016 NIDE_RS11775 3c7488d0750ca75782d3b9bd3d149089 190 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 117 123 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NIDE_RS11775 3c7488d0750ca75782d3b9bd3d149089 190 PANTHER PTHR18895 1 178 6.0E-45 T 23-04-2016 NIDE_RS11775 3c7488d0750ca75782d3b9bd3d149089 190 PIRSF PIRSF004553 1 184 7.2E-53 T 23-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS11775 3c7488d0750ca75782d3b9bd3d149089 190 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 179 1.1E-44 T 23-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS11775 3c7488d0750ca75782d3b9bd3d149089 190 Pfam PF03602 Conserved hypothetical protein 95 1 178 1.5E-51 T 23-04-2016 NIDE_RS11775 3c7488d0750ca75782d3b9bd3d149089 190 Gene3D G3DSA:3.40.50.150 1 182 2.4E-57 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 457 470 3.4E-31 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 432 451 3.4E-31 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 692 714 3.4E-31 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 520 536 3.4E-31 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 548 565 3.4E-31 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 643 655 3.4E-31 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 603 620 3.4E-31 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 585 601 3.4E-31 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 PANTHER PTHR13697:SF2 412 753 9.4E-35 T 23-04-2016 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 Gene3D G3DSA:3.40.50.1240 169 361 5.0E-5 T 23-04-2016 IPR029033 Histidine phosphatase superfamily NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 PANTHER PTHR13697 412 753 9.4E-35 T 23-04-2016 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 Pfam PF00365 Phosphofructokinase 432 726 1.3E-54 T 23-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 SUPERFAMILY SSF53784 421 759 2.88E-59 T 23-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 Gene3D G3DSA:3.40.50.450 421 622 2.6E-41 T 23-04-2016 NIDE_RS19540 06095cb26aa1e765a33dd8ce1c512a34 779 SUPERFAMILY SSF53254 170 366 1.13E-6 T 23-04-2016 IPR029033 Histidine phosphatase superfamily NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 SMART SM00864 13 205 4.4E-107 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 SUPERFAMILY SSF55307 205 319 1.37E-40 T 23-04-2016 IPR008280 Tubulin/FtsZ, C-terminal NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 SUPERFAMILY SSF52490 13 203 2.35E-67 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 372 37.546 T 23-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 Gene3D G3DSA:3.30.1330.20 215 321 6.6E-46 T 23-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 173 9.6E-41 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 Pfam PF12327 FtsZ family, C-terminal domain 222 317 1.9E-31 T 23-04-2016 IPR024757 Cell division protein FtsZ, C-terminal NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 PANTHER PTHR30314:SF3 1 374 3.9E-185 T 23-04-2016 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 SMART SM00865 207 325 2.1E-51 T 23-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 PRINTS PR00423 Cell division protein FtsZ signature 212 233 9.1E-48 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 PRINTS PR00423 Cell division protein FtsZ signature 189 211 9.1E-48 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 PRINTS PR00423 Cell division protein FtsZ signature 98 118 9.1E-48 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 PRINTS PR00423 Cell division protein FtsZ signature 126 147 9.1E-48 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 23-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 PANTHER PTHR30314 1 374 3.9E-185 T 23-04-2016 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 Gene3D G3DSA:3.40.50.1440 13 214 4.0E-91 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 325 5.2E-131 T 23-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 NIDE_RS03520 fb11413eddc0f98025e21dad0f700d10 374 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 23-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 NIDE_RS10935 32edce9b10b7885bc40c1bee1a2cbc58 84 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 5 84 2.3E-36 T 23-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 NIDE_RS10935 32edce9b10b7885bc40c1bee1a2cbc58 84 PANTHER PTHR38039:SF1 1 84 1.2E-31 T 23-04-2016 NIDE_RS10935 32edce9b10b7885bc40c1bee1a2cbc58 84 PANTHER PTHR38039 1 84 1.2E-31 T 23-04-2016 NIDE_RS10935 32edce9b10b7885bc40c1bee1a2cbc58 84 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 5 84 2.3E-40 T 23-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 NIDE_RS10935 32edce9b10b7885bc40c1bee1a2cbc58 84 SUPERFAMILY SSF143011 2 83 3.01E-27 T 23-04-2016 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 SUPERFAMILY SSF48256 5 377 4.84E-133 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 Gene3D G3DSA:1.10.580.10 13 236 1.2E-82 T 23-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 Gene3D G3DSA:1.10.230.10 237 324 2.5E-33 T 23-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 PIRSF PIRSF001369 2 377 5.7E-147 T 23-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 PANTHER PTHR11739:SF4 6 377 1.9E-168 T 23-04-2016 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 PRINTS PR00143 Citrate synthase signature 197 225 9.4E-48 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 PRINTS PR00143 Citrate synthase signature 330 344 9.4E-48 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 PRINTS PR00143 Citrate synthase signature 175 190 9.4E-48 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 PRINTS PR00143 Citrate synthase signature 250 270 9.4E-48 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 PRINTS PR00143 Citrate synthase signature 126 139 9.4E-48 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 PRINTS PR00143 Citrate synthase signature 310 326 9.4E-48 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 ProSitePatterns PS00480 Citrate synthase signature. 257 269 - T 23-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 8 377 6.7E-133 T 23-04-2016 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 PANTHER PTHR11739 6 377 1.9E-168 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS11235 662f5ec2197bcce5f50c0860f0af964e 377 Pfam PF00285 Citrate synthase, C-terminal domain 8 359 9.2E-128 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS19695 a92f97db42ee2c05d2df9b9a3737f469 344 SUPERFAMILY SSF54534 197 301 9.16E-24 T 23-04-2016 NIDE_RS19695 a92f97db42ee2c05d2df9b9a3737f469 344 SUPERFAMILY SSF109998 63 213 3.65E-22 T 23-04-2016 IPR027304 Trigger factor/SurA domain NIDE_RS19695 a92f97db42ee2c05d2df9b9a3737f469 344 Gene3D G3DSA:3.10.50.40 193 323 4.4E-34 T 23-04-2016 NIDE_RS19695 a92f97db42ee2c05d2df9b9a3737f469 344 PANTHER PTHR10657 42 344 1.4E-55 T 23-04-2016 NIDE_RS19695 a92f97db42ee2c05d2df9b9a3737f469 344 Pfam PF13624 SurA N-terminal domain 42 144 3.3E-10 T 23-04-2016 NIDE_RS19695 a92f97db42ee2c05d2df9b9a3737f469 344 PANTHER PTHR10657:SF11 42 344 1.4E-55 T 23-04-2016 NIDE_RS19695 a92f97db42ee2c05d2df9b9a3737f469 344 Pfam PF13145 PPIC-type PPIASE domain 181 311 7.7E-19 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 33 226 4.8E-23 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 319 36.482 T 23-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 Gene3D G3DSA:1.10.150.20 249 324 3.6E-34 T 23-04-2016 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 63 157 4.5E-22 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 PANTHER PTHR32108:SF0 1 332 3.5E-132 T 23-04-2016 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 PANTHER PTHR32108 1 332 3.5E-132 T 23-04-2016 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 Gene3D G3DSA:2.170.120.12 69 175 7.9E-43 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 SUPERFAMILY SSF47789 252 322 1.96E-26 T 23-04-2016 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 Gene3D G3DSA:3.30.1360.10 13 68 9.1E-10 T 23-04-2016 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 249 311 1.6E-26 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 SMART SM00662 25 232 5.9E-88 T 23-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 SUPERFAMILY SSF55257 177 231 9.62E-29 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 SUPERFAMILY SSF55257 14 55 9.62E-29 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 26 318 1.8E-116 T 23-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 259 324 2.0E-24 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 NIDE_RS06200 d3f53f6eeb58eced8f25375febfb9c44 333 SUPERFAMILY SSF56553 55 176 1.57E-40 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 NIDE_RS01740 0fe99670d5c3c6d4a8e05091c52d86e2 321 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 18 314 1.2E-79 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS01740 0fe99670d5c3c6d4a8e05091c52d86e2 321 Pfam PF00849 RNA pseudouridylate synthase 94 252 2.3E-30 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS01740 0fe99670d5c3c6d4a8e05091c52d86e2 321 PANTHER PTHR11079 10 319 8.4E-109 T 23-04-2016 NIDE_RS01740 0fe99670d5c3c6d4a8e05091c52d86e2 321 Gene3D G3DSA:3.10.290.10 20 68 9.7E-12 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS01740 0fe99670d5c3c6d4a8e05091c52d86e2 321 SUPERFAMILY SSF55120 78 316 5.28E-70 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS01740 0fe99670d5c3c6d4a8e05091c52d86e2 321 SMART SM00363 20 84 1.2E-10 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS01740 0fe99670d5c3c6d4a8e05091c52d86e2 321 SUPERFAMILY SSF55174 20 106 7.57E-14 T 23-04-2016 NIDE_RS01740 0fe99670d5c3c6d4a8e05091c52d86e2 321 PANTHER PTHR11079:SF73 10 319 8.4E-109 T 23-04-2016 NIDE_RS01740 0fe99670d5c3c6d4a8e05091c52d86e2 321 Pfam PF01479 S4 domain 21 66 1.4E-9 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS01740 0fe99670d5c3c6d4a8e05091c52d86e2 321 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 143 157 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS15650 51ef7514c66540025c73549b5cdb2e5a 379 PANTHER PTHR12526 15 354 1.3E-15 T 23-04-2016 NIDE_RS15650 51ef7514c66540025c73549b5cdb2e5a 379 Pfam PF13692 Glycosyl transferases group 1 186 315 1.9E-11 T 23-04-2016 NIDE_RS15650 51ef7514c66540025c73549b5cdb2e5a 379 SUPERFAMILY SSF53756 22 354 1.88E-30 T 23-04-2016 NIDE_RS15650 51ef7514c66540025c73549b5cdb2e5a 379 Gene3D G3DSA:3.40.50.2000 266 330 3.6E-8 T 23-04-2016 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 Hamap MF_00235 Adenylate kinase [adk]. 1 213 47.255 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 Gene3D G3DSA:3.40.50.300 1 211 1.1E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 PRINTS PR00094 Adenylate kinase signature 32 46 1.7E-32 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 PRINTS PR00094 Adenylate kinase signature 177 191 1.7E-32 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 PRINTS PR00094 Adenylate kinase signature 81 97 1.7E-32 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 PRINTS PR00094 Adenylate kinase signature 160 175 1.7E-32 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 PRINTS PR00094 Adenylate kinase signature 4 17 1.7E-32 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 Pfam PF05191 Adenylate kinase, active site lid 127 162 4.2E-13 T 23-04-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 SUPERFAMILY SSF52540 1 211 1.15E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 Pfam PF00406 Adenylate kinase 6 190 3.6E-53 T 23-04-2016 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 1.9E-75 T 23-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 NIDE_RS06170 327244091eb5be711d06ae6298ec5eef 218 PANTHER PTHR23359 1 212 1.3E-83 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 Pfam PF02954 Bacterial regulatory protein, Fis family 412 448 1.4E-12 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 SMART SM00382 164 315 1.4E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 Gene3D G3DSA:3.40.50.2300 3 148 1.5E-33 T 23-04-2016 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 SMART SM00448 4 115 1.4E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 Gene3D G3DSA:3.40.50.300 149 315 2.1E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 419 436 3.2E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 436 456 3.2E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 PANTHER PTHR32071 1 464 1.7E-199 T 23-04-2016 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 Gene3D G3DSA:1.10.10.60 403 456 6.6E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 SUPERFAMILY SSF52540 144 387 3.83E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 SUPERFAMILY SSF46689 356 455 1.25E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 356 365 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 Pfam PF00158 Sigma-54 interaction domain 144 310 1.7E-69 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 Pfam PF00072 Response regulator receiver domain 7 115 8.0E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 Gene3D G3DSA:1.10.8.60 317 389 2.7E-25 T 23-04-2016 NIDE_RS05815 2cfe26082df32c74d970cea41e902217 464 SUPERFAMILY SSF52172 1 187 3.13E-42 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS17925 988eb77164099f4899f757af79595d53 320 SUPERFAMILY SSF56436 62 307 3.77E-70 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS17925 988eb77164099f4899f757af79595d53 320 Gene3D G3DSA:3.90.1580.10 60 312 2.3E-69 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS17925 988eb77164099f4899f757af79595d53 320 Pfam PF03781 Sulfatase-modifying factor enzyme 1 62 304 1.5E-56 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS17925 988eb77164099f4899f757af79595d53 320 PANTHER PTHR23150 64 307 1.7E-64 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 Gene3D G3DSA:3.50.50.60 144 327 1.3E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PANTHER PTHR22912 4 460 3.7E-165 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 Gene3D G3DSA:3.50.50.60 4 143 3.8E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 Gene3D G3DSA:3.30.390.30 328 466 2.2E-46 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 SUPERFAMILY SSF51905 4 315 8.39E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 456 1.7E-29 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 191 2.5E-37 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 2.5E-37 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 2.5E-37 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 2.5E-37 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 2.5E-37 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PIRSF PIRSF000350 1 462 2.8E-90 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 466 1.6E-154 T 23-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 SUPERFAMILY SSF55424 337 467 2.92E-38 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PANTHER PTHR22912:SF125 4 460 3.7E-165 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 36 46 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 321 2.5E-71 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 3.2E-65 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 3.2E-65 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 3.2E-65 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 3.2E-65 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 35 50 3.2E-65 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 3.2E-65 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 173 198 3.2E-65 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 258 272 3.2E-65 T 23-04-2016 NIDE_RS12500 5bda52f15b9df6be99e2cf1374440e11 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 3.2E-65 T 23-04-2016 NIDE_RS03905 b3a3efa3fcb8908fa983b931c25de4b5 178 Gene3D G3DSA:3.40.30.10 6 176 3.5E-45 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS03905 b3a3efa3fcb8908fa983b931c25de4b5 178 ProSitePatterns PS00194 Thioredoxin family active site. 65 83 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 NIDE_RS03905 b3a3efa3fcb8908fa983b931c25de4b5 178 SUPERFAMILY SSF52833 34 177 2.87E-40 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS03905 b3a3efa3fcb8908fa983b931c25de4b5 178 PANTHER PTHR10681:SF104 28 159 6.1E-37 T 23-04-2016 NIDE_RS03905 b3a3efa3fcb8908fa983b931c25de4b5 178 Pfam PF00578 AhpC/TSA family 38 154 1.8E-28 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS03905 b3a3efa3fcb8908fa983b931c25de4b5 178 PANTHER PTHR10681 28 159 6.1E-37 T 23-04-2016 NIDE_RS19480 c4aa42fafbb1971db8f586e99c4b4b93 559 Gene3D G3DSA:3.40.50.300 350 558 2.2E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19480 c4aa42fafbb1971db8f586e99c4b4b93 559 SMART SM00382 375 559 0.0013 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS19480 c4aa42fafbb1971db8f586e99c4b4b93 559 SUPERFAMILY SSF52540 346 558 3.13E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19480 c4aa42fafbb1971db8f586e99c4b4b93 559 PANTHER PTHR24221 17 512 2.7E-44 T 23-04-2016 NIDE_RS19480 c4aa42fafbb1971db8f586e99c4b4b93 559 Pfam PF00005 ABC transporter 367 512 6.6E-12 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS19480 c4aa42fafbb1971db8f586e99c4b4b93 559 Gene3D G3DSA:1.20.1560.10 28 324 1.8E-11 T 23-04-2016 NIDE_RS19480 c4aa42fafbb1971db8f586e99c4b4b93 559 SUPERFAMILY SSF90123 30 329 9.68E-21 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS19480 c4aa42fafbb1971db8f586e99c4b4b93 559 PANTHER PTHR24221:SF161 17 512 2.7E-44 T 23-04-2016 NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 SUPERFAMILY SSF46785 1 83 2.0E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 Gene3D G3DSA:1.10.10.10 1 84 1.7E-30 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.43E-11 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.43E-11 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.43E-11 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 Gene3D G3DSA:3.40.190.10 177 263 1.0E-21 T 23-04-2016 NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 SUPERFAMILY SSF53850 90 296 1.43E-43 T 23-04-2016 NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 PANTHER PTHR30346 1 294 2.3E-98 T 23-04-2016 NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 Gene3D G3DSA:3.40.190.10 89 176 1.6E-20 T 23-04-2016 NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 Pfam PF03466 LysR substrate binding domain 88 292 9.7E-46 T 23-04-2016 IPR005119 LysR, substrate-binding NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.9E-23 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS16165 afb49a3eebb6c4ce5007f9f83ffa049a 298 PANTHER PTHR30346:SF3 1 294 2.3E-98 T 23-04-2016 NIDE_RS18195 3ffcd76b124404b755fdf2822cced2bd 391 PANTHER PTHR30349:SF20 92 351 1.3E-24 T 23-04-2016 NIDE_RS18195 3ffcd76b124404b755fdf2822cced2bd 391 Pfam PF00589 Phage integrase family 183 321 8.0E-15 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS18195 3ffcd76b124404b755fdf2822cced2bd 391 Gene3D G3DSA:1.10.443.10 182 334 3.7E-20 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS18195 3ffcd76b124404b755fdf2822cced2bd 391 PANTHER PTHR30349 92 351 1.3E-24 T 23-04-2016 NIDE_RS18195 3ffcd76b124404b755fdf2822cced2bd 391 SUPERFAMILY SSF56349 62 327 1.29E-39 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS18195 3ffcd76b124404b755fdf2822cced2bd 391 Gene3D G3DSA:1.10.150.130 63 156 9.7E-5 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal NIDE_RS02315 c00dd373366f27d67de5c5a651856090 400 PANTHER PTHR23028 18 394 3.2E-13 T 23-04-2016 NIDE_RS02315 c00dd373366f27d67de5c5a651856090 400 Pfam PF01757 Acyltransferase family 47 368 1.6E-17 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 NIDE_RS09100 404bb30a89cfb889611eabb571144e1a 441 SUPERFAMILY SSF48371 124 297 9.36E-9 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS09100 404bb30a89cfb889611eabb571144e1a 441 TIGRFAM TIGR02270 TIGR02270: conserved hypothetical protein 23 434 3.8E-107 T 23-04-2016 IPR011959 Conserved hypothetical protein CHP02270 NIDE_RS09100 404bb30a89cfb889611eabb571144e1a 441 Gene3D G3DSA:1.25.10.10 168 301 6.0E-7 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS11960 a3a5ffcd6e9fe78a17de98835fc7ff39 340 PANTHER PTHR30365 1 340 4.1E-67 T 23-04-2016 NIDE_RS11960 a3a5ffcd6e9fe78a17de98835fc7ff39 340 PIRSF PIRSF000267 1 340 6.3E-94 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 NIDE_RS11960 a3a5ffcd6e9fe78a17de98835fc7ff39 340 PANTHER PTHR30365:SF6 1 340 4.1E-67 T 23-04-2016 NIDE_RS11960 a3a5ffcd6e9fe78a17de98835fc7ff39 340 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 2 335 9.0E-80 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 NIDE_RS11960 a3a5ffcd6e9fe78a17de98835fc7ff39 340 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 3 218 3.0E-56 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 NIDE_RS06785 a5b7f3491aff4c780779f78c7d9990e0 554 Pfam PF13432 Tetratricopeptide repeat 119 172 4.4E-6 T 23-04-2016 NIDE_RS06785 a5b7f3491aff4c780779f78c7d9990e0 554 Pfam PF13432 Tetratricopeptide repeat 52 104 5.2E-8 T 23-04-2016 NIDE_RS06785 a5b7f3491aff4c780779f78c7d9990e0 554 SUPERFAMILY SSF48452 46 218 5.14E-26 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS06785 a5b7f3491aff4c780779f78c7d9990e0 554 Gene3D G3DSA:1.25.40.10 46 218 4.6E-26 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS06785 a5b7f3491aff4c780779f78c7d9990e0 554 PANTHER PTHR23083 39 220 1.5E-16 T 23-04-2016 NIDE_RS06785 a5b7f3491aff4c780779f78c7d9990e0 554 SMART SM00028 47 80 0.17 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06785 a5b7f3491aff4c780779f78c7d9990e0 554 SMART SM00028 115 148 20.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06785 a5b7f3491aff4c780779f78c7d9990e0 554 SMART SM00028 184 217 410.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06785 a5b7f3491aff4c780779f78c7d9990e0 554 SMART SM00028 81 114 28.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 409 455 6.7E-10 T 23-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 PANTHER PTHR11807 4 491 1.5E-89 T 23-04-2016 NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 SUPERFAMILY SSF56037 395 482 1.33E-16 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 Gene3D G3DSA:3.40.50.620 14 194 2.9E-21 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 Pfam PF01171 PP-loop family 31 213 1.9E-52 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 31 216 1.2E-56 T 23-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 Pfam PF11734 TilS substrate C-terminal domain 409 476 8.1E-10 T 23-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 SUPERFAMILY SSF52402 18 244 1.61E-59 T 23-04-2016 NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 22 307 24.516 T 23-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 PANTHER PTHR11807:SF2 4 491 1.5E-89 T 23-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NIDE_RS20750 a27d3e109f1b0c1f65aabf8ce6777058 494 SMART SM00977 409 481 9.5E-17 T 23-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 NIDE_RS12965 ce99cad6e8f34f43a6f7bb53254cf29a 575 PANTHER PTHR30258:SF1 1 575 1.2E-191 T 23-04-2016 NIDE_RS12965 ce99cad6e8f34f43a6f7bb53254cf29a 575 Pfam PF00437 Type II/IV secretion system protein 191 461 2.6E-74 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS12965 ce99cad6e8f34f43a6f7bb53254cf29a 575 SUPERFAMILY SSF52540 179 570 1.09E-95 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12965 ce99cad6e8f34f43a6f7bb53254cf29a 575 Gene3D G3DSA:3.30.450.90 165 290 6.2E-44 T 23-04-2016 NIDE_RS12965 ce99cad6e8f34f43a6f7bb53254cf29a 575 Gene3D G3DSA:3.40.50.300 300 570 3.0E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12965 ce99cad6e8f34f43a6f7bb53254cf29a 575 PANTHER PTHR30258 1 575 1.2E-191 T 23-04-2016 NIDE_RS12965 ce99cad6e8f34f43a6f7bb53254cf29a 575 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 390 404 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS12965 ce99cad6e8f34f43a6f7bb53254cf29a 575 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 43 147 1.4E-24 T 23-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 NIDE_RS12965 ce99cad6e8f34f43a6f7bb53254cf29a 575 SUPERFAMILY SSF160246 5 142 3.4E-31 T 23-04-2016 NIDE_RS06985 7a6ac9a9dcfbda147bfe433198d593be 282 PANTHER PTHR13773 126 279 2.0E-52 T 23-04-2016 NIDE_RS06985 7a6ac9a9dcfbda147bfe433198d593be 282 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 237 263 - T 23-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 NIDE_RS06985 7a6ac9a9dcfbda147bfe433198d593be 282 Pfam PF01148 Cytidylyltransferase family 19 278 1.1E-53 T 23-04-2016 NIDE_RS14240 f8b4217be72466c3f633a63782457e13 255 Pfam PF14518 Iron-containing redox enzyme 37 188 6.4E-25 T 23-04-2016 IPR028201 PqqC-like protein NIDE_RS14240 f8b4217be72466c3f633a63782457e13 255 Gene3D G3DSA:1.20.910.10 2 235 5.1E-59 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 NIDE_RS14240 f8b4217be72466c3f633a63782457e13 255 SMART SM01236 69 175 2.1E-11 T 23-04-2016 NIDE_RS14240 f8b4217be72466c3f633a63782457e13 255 SUPERFAMILY SSF48613 2 225 1.59E-31 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 NIDE_RS05910 55a88bdf8a8a3efd33709f407613bfa8 509 SUPERFAMILY SSF52317 381 456 2.75E-14 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS05910 55a88bdf8a8a3efd33709f407613bfa8 509 SUPERFAMILY SSF52317 207 345 2.75E-14 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS05910 55a88bdf8a8a3efd33709f407613bfa8 509 Gene3D G3DSA:3.40.50.880 205 292 4.8E-6 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS05910 55a88bdf8a8a3efd33709f407613bfa8 509 PANTHER PTHR12969:SF8 16 235 7.9E-15 T 23-04-2016 NIDE_RS05910 55a88bdf8a8a3efd33709f407613bfa8 509 PANTHER PTHR12969:SF8 262 320 7.9E-15 T 23-04-2016 NIDE_RS05910 55a88bdf8a8a3efd33709f407613bfa8 509 PANTHER PTHR12969 16 235 7.9E-15 T 23-04-2016 NIDE_RS05910 55a88bdf8a8a3efd33709f407613bfa8 509 PANTHER PTHR12969 262 320 7.9E-15 T 23-04-2016 NIDE_RS05910 55a88bdf8a8a3efd33709f407613bfa8 509 Pfam PF09822 ABC-type uncharacterized transport system 96 317 3.3E-42 T 23-04-2016 IPR019196 ABC-type uncharacterised transport system NIDE_RS01570 50122c5962bb3f69c4efb9452bfde279 734 Pfam PF01841 Transglutaminase-like superfamily 408 523 1.4E-29 T 23-04-2016 IPR002931 Transglutaminase-like NIDE_RS01570 50122c5962bb3f69c4efb9452bfde279 734 Gene3D G3DSA:3.90.260.10 396 566 3.7E-33 T 23-04-2016 IPR002931 Transglutaminase-like NIDE_RS01570 50122c5962bb3f69c4efb9452bfde279 734 Pfam PF11992 Domain of unknown function (DUF3488) 12 372 4.1E-55 T 23-04-2016 IPR021878 Protein of unknown function DUF3488 NIDE_RS01570 50122c5962bb3f69c4efb9452bfde279 734 SUPERFAMILY SSF54001 381 569 6.67E-44 T 23-04-2016 NIDE_RS01570 50122c5962bb3f69c4efb9452bfde279 734 PANTHER PTHR33490 10 527 1.7E-60 T 23-04-2016 NIDE_RS01570 50122c5962bb3f69c4efb9452bfde279 734 Pfam PF13559 Domain of unknown function (DUF4129) 651 716 3.2E-8 T 23-04-2016 IPR025403 Domain of unknown function DUF4129 NIDE_RS01570 50122c5962bb3f69c4efb9452bfde279 734 SMART SM00460 454 525 1.4E-24 T 23-04-2016 IPR002931 Transglutaminase-like NIDE_RS01570 50122c5962bb3f69c4efb9452bfde279 734 PANTHER PTHR33490:SF4 10 527 1.7E-60 T 23-04-2016 NIDE_RS02985 1dc80a60bf923df5cd7a278412be3ef5 785 Pfam PF00593 TonB dependent receptor 538 783 2.8E-28 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS02985 1dc80a60bf923df5cd7a278412be3ef5 785 Gene3D G3DSA:2.40.170.20 227 785 4.6E-142 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS02985 1dc80a60bf923df5cd7a278412be3ef5 785 Gene3D G3DSA:2.170.130.10 91 219 2.8E-35 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02985 1dc80a60bf923df5cd7a278412be3ef5 785 Pfam PF07715 TonB-dependent Receptor Plug Domain 114 211 2.3E-18 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02985 1dc80a60bf923df5cd7a278412be3ef5 785 SUPERFAMILY SSF56935 84 784 1.27E-127 T 23-04-2016 NIDE_RS02985 1dc80a60bf923df5cd7a278412be3ef5 785 PANTHER PTHR32552:SF10 10 82 6.3E-184 T 23-04-2016 NIDE_RS02985 1dc80a60bf923df5cd7a278412be3ef5 785 PANTHER PTHR32552:SF10 104 785 6.3E-184 T 23-04-2016 NIDE_RS02985 1dc80a60bf923df5cd7a278412be3ef5 785 PANTHER PTHR32552 10 82 6.3E-184 T 23-04-2016 NIDE_RS02985 1dc80a60bf923df5cd7a278412be3ef5 785 PANTHER PTHR32552 104 785 6.3E-184 T 23-04-2016 NIDE_RS02985 1dc80a60bf923df5cd7a278412be3ef5 785 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 114 782 4.7E-105 T 23-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 ProSitePatterns PS00756 Protein secY signature 2. 167 184 - T 23-04-2016 IPR030659 SecY conserved site NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 423 30.904 T 23-04-2016 IPR026593 Protein translocase subunit SecY NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 148 173 1.8E-98 T 23-04-2016 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 360 378 1.8E-98 T 23-04-2016 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 266 285 1.8E-98 T 23-04-2016 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 70 90 1.8E-98 T 23-04-2016 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 111 134 1.8E-98 T 23-04-2016 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 305 327 1.8E-98 T 23-04-2016 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 392 410 1.8E-98 T 23-04-2016 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 1.8E-98 T 23-04-2016 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 174 197 1.8E-98 T 23-04-2016 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 SUPERFAMILY SSF103491 2 414 2.09E-128 T 23-04-2016 IPR023201 SecY subunit domain NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PANTHER PTHR10906:SF2 1 431 6.1E-215 T 23-04-2016 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 419 2.8E-126 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PIRSF PIRSF004557 1 431 7.4E-121 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 ProSitePatterns PS00755 Protein secY signature 1. 71 90 - T 23-04-2016 IPR030659 SecY conserved site NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 Pfam PF00344 SecY translocase 71 406 1.6E-118 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 Gene3D G3DSA:1.10.3370.10 2 427 2.8E-163 T 23-04-2016 IPR023201 SecY subunit domain NIDE_RS06165 227f82f7f3f0b8f9bbf214b29941b2d4 433 PANTHER PTHR10906 1 431 6.1E-215 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 419 1.6E-163 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 SUPERFAMILY SSF46589 1 112 1.05E-22 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 424 40.278 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 PIRSF PIRSF001529 1 428 1.3E-173 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 PRINTS PR00981 Seryl-tRNA synthetase signature 332 348 2.3E-30 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 PRINTS PR00981 Seryl-tRNA synthetase signature 315 328 2.3E-30 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 PRINTS PR00981 Seryl-tRNA synthetase signature 263 275 2.3E-30 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 PRINTS PR00981 Seryl-tRNA synthetase signature 275 288 2.3E-30 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 PRINTS PR00981 Seryl-tRNA synthetase signature 350 366 2.3E-30 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 221 402 2.0E-37 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 Gene3D G3DSA:3.30.930.10 105 422 5.6E-143 T 23-04-2016 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.7E-19 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 SUPERFAMILY SSF55681 116 420 1.3E-100 T 23-04-2016 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 PANTHER PTHR11778 1 427 2.3E-200 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 NIDE_RS10025 732cc37d73b0a05e0cbd0281b91d212d 428 Gene3D G3DSA:1.10.287.40 1 104 3.4E-17 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 Gene3D G3DSA:3.40.50.720 5 93 4.8E-15 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 SUPERFAMILY SSF51984 3 95 3.14E-13 T 23-04-2016 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 PANTHER PTHR23135 1 458 3.1E-150 T 23-04-2016 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 389 2.7E-6 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 Gene3D G3DSA:3.40.1190.10 95 320 3.9E-55 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 Gene3D G3DSA:3.90.190.20 322 455 4.4E-46 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 Pfam PF08245 Mur ligase middle domain 111 299 1.2E-31 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 SUPERFAMILY SSF53244 320 458 1.65E-41 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 4 458 33.231 T 23-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 PANTHER PTHR23135:SF2 1 458 3.1E-150 T 23-04-2016 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 SUPERFAMILY SSF53623 98 318 1.27E-48 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03480 0a48017fbee611102aa4a8befcbf65ac 460 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 5 456 1.9E-123 T 23-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 Gene3D G3DSA:3.90.230.10 1 247 9.5E-84 T 23-04-2016 IPR000994 Peptidase M24, structural domain NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 Pfam PF00557 Metallopeptidase family M24 12 238 8.3E-49 T 23-04-2016 IPR000994 Peptidase M24, structural domain NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 1.1E-94 T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 PANTHER PTHR10804:SF41 1 249 9.7E-123 T 23-04-2016 NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 PRINTS PR00599 Methionine aminopeptidase-1 signature 89 105 1.0E-20 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 1.0E-20 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 PRINTS PR00599 Methionine aminopeptidase-1 signature 67 80 1.0E-20 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 1.0E-20 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 SUPERFAMILY SSF55920 1 243 2.22E-79 T 23-04-2016 IPR000994 Peptidase M24, structural domain NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 Hamap MF_01974 Methionine aminopeptidase [map]. 2 248 38.75 T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 165 183 - T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 NIDE_RS06175 251b59213724d0513c030fe5ba78e3f8 251 PANTHER PTHR10804 1 249 9.7E-123 T 23-04-2016 NIDE_RS06245 68f472093cc4b7cf209d3f6d2780659a 365 Pfam PF11104 Type IV pilus assembly protein PilM; 25 361 2.0E-82 T 23-04-2016 IPR005883 Type IV pilus assembly protein PilM NIDE_RS06245 68f472093cc4b7cf209d3f6d2780659a 365 PANTHER PTHR32432 11 363 1.4E-79 T 23-04-2016 NIDE_RS06245 68f472093cc4b7cf209d3f6d2780659a 365 PIRSF PIRSF019169 11 363 1.9E-114 T 23-04-2016 IPR005883 Type IV pilus assembly protein PilM NIDE_RS06245 68f472093cc4b7cf209d3f6d2780659a 365 Gene3D G3DSA:3.30.420.40 22 103 2.5E-9 T 23-04-2016 NIDE_RS06245 68f472093cc4b7cf209d3f6d2780659a 365 Gene3D G3DSA:3.30.420.40 205 324 4.9E-23 T 23-04-2016 NIDE_RS06245 68f472093cc4b7cf209d3f6d2780659a 365 SUPERFAMILY SSF53067 63 186 5.09E-18 T 23-04-2016 NIDE_RS06245 68f472093cc4b7cf209d3f6d2780659a 365 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 22 362 9.3E-85 T 23-04-2016 IPR005883 Type IV pilus assembly protein PilM NIDE_RS06245 68f472093cc4b7cf209d3f6d2780659a 365 PANTHER PTHR32432:SF3 11 363 1.4E-79 T 23-04-2016 NIDE_RS06245 68f472093cc4b7cf209d3f6d2780659a 365 SMART SM00842 23 193 1.9E-5 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 NIDE_RS06245 68f472093cc4b7cf209d3f6d2780659a 365 SUPERFAMILY SSF53067 197 359 1.4E-20 T 23-04-2016 NIDE_RS06545 4c651e14311e24c822070fadeb03535f 497 Pfam PF08241 Methyltransferase domain 206 280 1.6E-4 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS06545 4c651e14311e24c822070fadeb03535f 497 Gene3D G3DSA:3.40.50.150 192 279 4.8E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS06545 4c651e14311e24c822070fadeb03535f 497 Gene3D G3DSA:3.40.50.150 326 380 4.8E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS06545 4c651e14311e24c822070fadeb03535f 497 SUPERFAMILY SSF53335 335 391 7.28E-18 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS06545 4c651e14311e24c822070fadeb03535f 497 SUPERFAMILY SSF53335 186 291 7.28E-18 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12525 a2a60c8d93e6e9c572ba8eda6cbf686b 355 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 344 2.8E-87 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS12525 a2a60c8d93e6e9c572ba8eda6cbf686b 355 PANTHER PTHR30244 1 355 2.5E-83 T 23-04-2016 NIDE_RS12525 a2a60c8d93e6e9c572ba8eda6cbf686b 355 PANTHER PTHR30244:SF16 1 355 2.5E-83 T 23-04-2016 NIDE_RS12525 a2a60c8d93e6e9c572ba8eda6cbf686b 355 Gene3D G3DSA:3.90.1150.10 235 344 5.4E-14 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS12525 a2a60c8d93e6e9c572ba8eda6cbf686b 355 SUPERFAMILY SSF53383 4 352 2.3E-82 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS12525 a2a60c8d93e6e9c572ba8eda6cbf686b 355 PIRSF PIRSF000390 1 355 7.1E-84 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS12525 a2a60c8d93e6e9c572ba8eda6cbf686b 355 Gene3D G3DSA:3.40.640.10 4 233 1.3E-63 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 PANTHER PTHR30265 4 179 8.8E-65 T 23-04-2016 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 Pfam PF02357 Transcription termination factor nusG 4 109 1.0E-24 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 PRINTS PR00338 Transcription termination factor NUSG signature 58 70 1.3E-18 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 PRINTS PR00338 Transcription termination factor NUSG signature 137 152 1.3E-18 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 PRINTS PR00338 Transcription termination factor NUSG signature 155 171 1.3E-18 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 3 179 23.678 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 SMART SM00738 3 113 1.1E-39 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 SUPERFAMILY SSF50104 124 179 8.53E-17 T 23-04-2016 IPR008991 Translation protein SH3-like domain NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 SUPERFAMILY SSF82679 4 115 3.4E-33 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 ProSitePatterns PS01014 Transcription termination factor nusG signature. 162 171 - T 23-04-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 6 179 1.8E-60 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 Pfam PF00467 KOW motif 128 159 3.0E-7 T 23-04-2016 IPR005824 KOW NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 Gene3D G3DSA:3.30.70.940 4 114 1.4E-39 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 Gene3D G3DSA:2.30.30.30 121 179 3.6E-24 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 NIDE_RS06015 33c378830669bb5b913cdffa862093cd 179 SMART SM00739 125 152 2.7E-4 T 23-04-2016 IPR005824 KOW NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 32 84 3.0E-15 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 PANTHER PTHR13479 15 81 3.2E-22 T 23-04-2016 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 Pfam PF01084 Ribosomal protein S18 30 78 8.3E-23 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 PRINTS PR00974 Ribosomal protein S18 family signature 39 49 8.9E-15 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 PRINTS PR00974 Ribosomal protein S18 family signature 49 56 8.9E-15 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 PRINTS PR00974 Ribosomal protein S18 family signature 57 71 8.9E-15 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 PRINTS PR00974 Ribosomal protein S18 family signature 71 81 8.9E-15 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 SUPERFAMILY SSF46911 15 82 6.41E-24 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 14 84 19.427 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 Gene3D G3DSA:4.10.640.10 20 83 1.1E-26 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 ProSitePatterns PS00057 Ribosomal protein S18 signature. 32 55 - T 23-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS03630 15186a07bacf1c50090cf3a0f0baad3f 85 TIGRFAM TIGR00165 S18: ribosomal protein bS18 16 83 6.6E-27 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 PANTHER PTHR11468:SF9 488 702 4.5E-249 T 23-04-2016 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 PANTHER PTHR11468 488 702 4.5E-249 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 TIGRFAM TIGR02094 more_P_ylases: alpha-glucan phosphorylases 104 704 1.4E-253 T 23-04-2016 IPR011834 Alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 PANTHER PTHR11468:SF9 104 470 4.5E-249 T 23-04-2016 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 Gene3D G3DSA:3.40.50.2000 413 713 1.6E-83 T 23-04-2016 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 Gene3D G3DSA:3.40.50.2000 19 412 7.3E-81 T 23-04-2016 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 Pfam PF00343 Carbohydrate phosphorylase 266 615 1.9E-17 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 SUPERFAMILY SSF53756 9 706 7.18E-201 T 23-04-2016 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 Pfam PF11897 Protein of unknown function (DUF3417) 8 116 1.5E-35 T 23-04-2016 IPR024517 Glycogen phosphorylase, domain of unknown function DUF3417 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 PANTHER PTHR11468 104 470 4.5E-249 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 NIDE_RS05960 f3169f51caaaa8af3da0a835fefa3816 713 PIRSF PIRSF000460 2 712 2.9E-255 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 NIDE_RS10710 2b815a0f313c8c5728b16b0d87ff5f0f 605 Pfam PF13524 Glycosyl transferases group 1 421 519 3.7E-22 T 23-04-2016 NIDE_RS10710 2b815a0f313c8c5728b16b0d87ff5f0f 605 Pfam PF12996 DUF based on E. rectale Gene description (DUF3880) 289 366 1.6E-19 T 23-04-2016 IPR024542 Domain of unknown function DUF3880 NIDE_RS17035 06bfce4673d233fbaccccb12345bd458 361 PANTHER PTHR30544 6 343 1.2E-142 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS17035 06bfce4673d233fbaccccb12345bd458 361 Pfam PF13394 4Fe-4S single cluster domain 116 208 1.3E-4 T 23-04-2016 NIDE_RS17035 06bfce4673d233fbaccccb12345bd458 361 SUPERFAMILY SSF102114 105 318 6.54E-16 T 23-04-2016 NIDE_RS17035 06bfce4673d233fbaccccb12345bd458 361 PIRSF PIRSF006004 5 360 3.0E-122 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS17035 06bfce4673d233fbaccccb12345bd458 361 PANTHER PTHR30544:SF5 6 343 1.2E-142 T 23-04-2016 NIDE_RS17035 06bfce4673d233fbaccccb12345bd458 361 Pfam PF04055 Radical SAM superfamily 112 280 1.8E-13 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS17035 06bfce4673d233fbaccccb12345bd458 361 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 8 349 66.78 T 23-04-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS17035 06bfce4673d233fbaccccb12345bd458 361 Gene3D G3DSA:3.20.20.70 108 346 1.8E-16 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS17035 06bfce4673d233fbaccccb12345bd458 361 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 6 348 6.4E-116 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS03655 14d7591370b30683342db1a34e320473 247 Gene3D G3DSA:3.40.50.720 2 246 8.0E-98 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03655 14d7591370b30683342db1a34e320473 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 244 2.9E-101 T 23-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 4.7E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 4.7E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 4.7E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.7E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 4.7E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 4.7E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03655 14d7591370b30683342db1a34e320473 247 SUPERFAMILY SSF51735 4 246 2.37E-92 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03655 14d7591370b30683342db1a34e320473 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 1.7E-6 T 23-04-2016 NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PANTHER PTHR24322:SF328 10 138 1.3E-63 T 23-04-2016 NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PANTHER PTHR24322:SF328 154 186 1.3E-63 T 23-04-2016 NIDE_RS03655 14d7591370b30683342db1a34e320473 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 244 2.2E-73 T 23-04-2016 NIDE_RS03655 14d7591370b30683342db1a34e320473 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PANTHER PTHR24322 10 138 1.3E-63 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PANTHER PTHR24322 154 186 1.3E-63 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 6.5E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 6.5E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03655 14d7591370b30683342db1a34e320473 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 6.5E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14975 b8cc83c67f10f142a87f9c54f94e5392 317 SMART SM00887 56 307 0.002 T 23-04-2016 IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain GO:0020037 NIDE_RS14975 b8cc83c67f10f142a87f9c54f94e5392 317 Pfam PF09459 Ethylbenzene dehydrogenase 56 306 1.3E-30 T 23-04-2016 IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain GO:0020037 NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 100 123 - T 23-04-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 321 420 1.5E-26 T 23-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 29.595 T 23-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 SUPERFAMILY SSF69075 318 420 8.11E-22 T 23-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 SUPERFAMILY SSF69742 1 159 3.79E-47 T 23-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 Gene3D G3DSA:3.40.50.720 164 312 4.9E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 157 3.7E-46 T 23-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 SUPERFAMILY SSF51735 164 315 5.58E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 PIRSF PIRSF000445 1 420 1.7E-152 T 23-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 PANTHER PTHR13812 1 420 7.2E-126 T 23-04-2016 NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 PANTHER PTHR13812:SF18 1 420 7.2E-126 T 23-04-2016 NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 172 305 4.8E-42 T 23-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase NIDE_RS12595 f6cf0d38f96ebd7f6ce8fb0f08cabbab 420 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 3 420 7.1E-143 T 23-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 NIDE_RS09590 7979cfd04a43fc9d69f289c92e5cc744 280 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 8 250 3.1E-94 T 23-04-2016 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 NIDE_RS09590 7979cfd04a43fc9d69f289c92e5cc744 280 PANTHER PTHR21091 3 190 2.9E-48 T 23-04-2016 NIDE_RS09590 7979cfd04a43fc9d69f289c92e5cc744 280 PANTHER PTHR21091:SF9 3 190 2.9E-48 T 23-04-2016 NIDE_RS09590 7979cfd04a43fc9d69f289c92e5cc744 280 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 8 215 1.5E-30 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS09590 7979cfd04a43fc9d69f289c92e5cc744 280 Gene3D G3DSA:3.30.950.10 124 233 7.8E-7 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 NIDE_RS09590 7979cfd04a43fc9d69f289c92e5cc744 280 SUPERFAMILY SSF53790 3 253 1.18E-48 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS09590 7979cfd04a43fc9d69f289c92e5cc744 280 Gene3D G3DSA:3.40.1010.10 6 123 9.5E-31 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 NIDE_RS13620 dbe862023565be968a71c30b40fb8d82 247 SUPERFAMILY SSF53448 15 238 5.41E-58 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13620 dbe862023565be968a71c30b40fb8d82 247 PANTHER PTHR32125:SF4 14 240 2.0E-74 T 23-04-2016 NIDE_RS13620 dbe862023565be968a71c30b40fb8d82 247 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 16 238 1.1E-66 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS13620 dbe862023565be968a71c30b40fb8d82 247 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 17 237 1.5E-71 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS13620 dbe862023565be968a71c30b40fb8d82 247 PANTHER PTHR32125 14 240 2.0E-74 T 23-04-2016 NIDE_RS13620 dbe862023565be968a71c30b40fb8d82 247 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 14 240 32.326 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS13620 dbe862023565be968a71c30b40fb8d82 247 Gene3D G3DSA:3.90.550.10 15 240 2.2E-72 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13620 dbe862023565be968a71c30b40fb8d82 247 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 114 121 - T 23-04-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 SMART SM00382 315 467 1.5E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 PANTHER PTHR32071 282 595 2.2E-145 T 23-04-2016 NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 SUPERFAMILY SSF52540 294 538 1.35E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 576 596 5.6E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 559 576 5.6E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 319 332 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 Pfam PF02954 Bacterial regulatory protein, Fis family 558 592 2.8E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 Pfam PF00158 Sigma-54 interaction domain 295 461 1.5E-66 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 Gene3D G3DSA:1.10.8.60 468 545 2.7E-24 T 23-04-2016 NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 Gene3D G3DSA:3.40.50.300 292 467 8.9E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 Gene3D G3DSA:1.10.10.60 557 595 1.9E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 SUPERFAMILY SSF46689 554 595 7.77E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS01250 fdded6c394b830e4106766f5259308ae 598 Gene3D G3DSA:3.30.450.20 163 277 6.9E-5 T 23-04-2016 NIDE_RS14260 7b4bf90b26f20ae0d4a4884e39de3a3e 253 SUPERFAMILY SSF53271 55 205 6.24E-6 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS14260 7b4bf90b26f20ae0d4a4884e39de3a3e 253 Gene3D G3DSA:3.40.50.2020 52 205 2.7E-8 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS04795 f83910b94b272992f8d340557968cec6 128 SUPERFAMILY SSF52172 1 124 3.84E-8 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS04795 f83910b94b272992f8d340557968cec6 128 Gene3D G3DSA:3.40.50.2300 1 123 7.0E-6 T 23-04-2016 NIDE_RS09635 2ff7332d45398101caf75db55543fca8 313 PANTHER PTHR35007 89 308 1.7E-57 T 23-04-2016 NIDE_RS09635 2ff7332d45398101caf75db55543fca8 313 PANTHER PTHR35007:SF2 89 308 1.7E-57 T 23-04-2016 NIDE_RS09635 2ff7332d45398101caf75db55543fca8 313 Pfam PF00482 Type II secretion system (T2SS), protein F 168 296 2.0E-19 T 23-04-2016 IPR018076 Type II secretion system F domain NIDE_RS20120 92f9636c94a6351facb48730e31c58df 202 PANTHER PTHR10849 4 199 8.9E-44 T 23-04-2016 NIDE_RS20120 92f9636c94a6351facb48730e31c58df 202 PANTHER PTHR10849:SF13 4 199 8.9E-44 T 23-04-2016 NIDE_RS20120 92f9636c94a6351facb48730e31c58df 202 Gene3D G3DSA:1.10.1060.10 28 138 7.7E-18 T 23-04-2016 NIDE_RS20120 92f9636c94a6351facb48730e31c58df 202 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 114 125 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS20120 92f9636c94a6351facb48730e31c58df 202 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 73 84 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS20120 92f9636c94a6351facb48730e31c58df 202 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 30 152 1.6E-39 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 NIDE_RS20120 92f9636c94a6351facb48730e31c58df 202 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 20 161 25.852 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 NIDE_RS20120 92f9636c94a6351facb48730e31c58df 202 Pfam PF12838 4Fe-4S dicluster domain 72 128 3.2E-11 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS20120 92f9636c94a6351facb48730e31c58df 202 SUPERFAMILY SSF54862 46 152 5.44E-22 T 23-04-2016 NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 Gene3D G3DSA:1.10.1040.10 188 281 6.2E-30 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 Gene3D G3DSA:3.40.50.720 3 187 1.3E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 SUPERFAMILY SSF51735 2 184 1.75E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 SUPERFAMILY SSF48179 186 287 2.81E-31 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 Gene3D G3DSA:1.10.1040.10 317 403 1.6E-22 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 SUPERFAMILY SSF48179 314 407 2.13E-23 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 183 207 - T 23-04-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 184 3.6E-60 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 314 407 1.3E-15 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 280 3.5E-29 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 NIDE_RS14225 9c554a9f75f3605f70f31c37e7ed4a25 407 PANTHER PTHR23309 5 407 2.9E-149 T 23-04-2016 NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 224 246 - T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 SUPERFAMILY SSF48179 163 271 2.21E-38 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 SUPERFAMILY SSF51735 6 162 7.13E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 PANTHER PTHR11645 1 273 3.6E-118 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 PANTHER PTHR11645:SF0 1 273 3.6E-118 T 23-04-2016 NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 7 268 8.2E-87 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 268 8.1E-41 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 Gene3D G3DSA:3.40.50.720 3 162 5.2E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 101 4.1E-20 T 23-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 5 268 28.64 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 Gene3D G3DSA:1.10.3730.10 163 268 1.4E-44 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS07600 80b5c3eb379a08653ccf8598122dde8f 276 PIRSF PIRSF000193 4 271 2.2E-84 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 Pfam PF02096 60Kd inner membrane protein 366 543 5.1E-57 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 PRINTS PR00701 60kDa inner membrane protein signature 94 115 5.2E-36 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 PRINTS PR00701 60kDa inner membrane protein signature 261 276 5.2E-36 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 PRINTS PR00701 60kDa inner membrane protein signature 427 450 5.2E-36 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 PRINTS PR00701 60kDa inner membrane protein signature 474 496 5.2E-36 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 PRINTS PR00701 60kDa inner membrane protein signature 510 533 5.2E-36 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 PANTHER PTHR12428 329 544 3.0E-71 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 363 2.2E-49 T 23-04-2016 IPR028053 Membrane insertase YidC, N-terminal NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 PANTHER PTHR12428:SF14 329 544 3.0E-71 T 23-04-2016 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 365 543 9.1E-64 T 23-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 PRINTS PR01900 YidC translocation/secretion protein signature 351 367 7.0E-21 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 PRINTS PR01900 YidC translocation/secretion protein signature 480 495 7.0E-21 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 PRINTS PR01900 YidC translocation/secretion protein signature 499 523 7.0E-21 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 3 546 19.798 T 23-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 NIDE_RS01650 948d55b93e7fe485bc3a57757e8b6005 580 Pfam PF14849 YidC periplasmic domain 89 353 2.1E-33 T 23-04-2016 IPR028053 Membrane insertase YidC, N-terminal NIDE_RS02300 1c5e5223d9ba9970cbbb61af42051c94 285 Gene3D G3DSA:3.30.1300.10 175 283 8.3E-33 T 23-04-2016 NIDE_RS02300 1c5e5223d9ba9970cbbb61af42051c94 285 Gene3D G3DSA:3.40.50.620 1 167 1.8E-73 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS02300 1c5e5223d9ba9970cbbb61af42051c94 285 SUPERFAMILY SSF52374 1 279 3.22E-100 T 23-04-2016 NIDE_RS02300 1c5e5223d9ba9970cbbb61af42051c94 285 Hamap MF_00158 Pantothenate synthetase [panC]. 2 279 37.989 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 NIDE_RS02300 1c5e5223d9ba9970cbbb61af42051c94 285 Pfam PF02569 Pantoate-beta-alanine ligase 2 277 5.3E-99 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 NIDE_RS02300 1c5e5223d9ba9970cbbb61af42051c94 285 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 278 2.8E-93 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 NIDE_RS02300 1c5e5223d9ba9970cbbb61af42051c94 285 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 26 87 1.1E-8 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NIDE_RS02300 1c5e5223d9ba9970cbbb61af42051c94 285 PANTHER PTHR21299:SF1 1 284 3.1E-131 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 NIDE_RS02300 1c5e5223d9ba9970cbbb61af42051c94 285 PANTHER PTHR21299 1 284 3.1E-131 T 23-04-2016 NIDE_RS02770 cff7df49434f25e7bc25a05762534c36 281 Pfam PF01522 Polysaccharide deacetylase 75 200 1.8E-24 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS02770 cff7df49434f25e7bc25a05762534c36 281 PANTHER PTHR10587 99 271 9.8E-22 T 23-04-2016 NIDE_RS02770 cff7df49434f25e7bc25a05762534c36 281 Gene3D G3DSA:3.20.20.370 66 272 2.5E-41 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS02770 cff7df49434f25e7bc25a05762534c36 281 SUPERFAMILY SSF88713 48 271 1.62E-41 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS04305 405a5ee746b7ce00899955ee23bdb76c 200 TIGRFAM TIGR01076 sortase_fam: sortase 77 195 3.7E-12 T 23-04-2016 IPR005754 Sortase family NIDE_RS04305 405a5ee746b7ce00899955ee23bdb76c 200 SUPERFAMILY SSF63817 58 194 2.75E-18 T 23-04-2016 IPR023365 Sortase domain NIDE_RS04305 405a5ee746b7ce00899955ee23bdb76c 200 PANTHER PTHR33393:SF5 57 194 1.1E-22 T 23-04-2016 NIDE_RS04305 405a5ee746b7ce00899955ee23bdb76c 200 PANTHER PTHR33393 57 194 1.1E-22 T 23-04-2016 NIDE_RS04305 405a5ee746b7ce00899955ee23bdb76c 200 TIGRFAM TIGR03784 marine_sortase: sortase, marine proteobacterial type 19 191 2.8E-63 T 23-04-2016 IPR022445 Sortase, proteobacterial type NIDE_RS04305 405a5ee746b7ce00899955ee23bdb76c 200 Pfam PF04203 Sortase family 77 194 1.4E-17 T 23-04-2016 IPR005754 Sortase family NIDE_RS05160 1ef32b12daf178c99b05bb291099d77f 170 SMART SM00287 27 90 3.6E-6 T 23-04-2016 IPR003646 SH3-like domain, bacterial-type NIDE_RS05160 1ef32b12daf178c99b05bb291099d77f 170 Pfam PF08239 Bacterial SH3 domain 37 84 5.7E-8 T 23-04-2016 IPR003646 SH3-like domain, bacterial-type NIDE_RS15185 94d5e4b4d050f9193d18ee4056081979 330 PANTHER PTHR32347:SF16 1 241 1.5E-24 T 23-04-2016 NIDE_RS15185 94d5e4b4d050f9193d18ee4056081979 330 SUPERFAMILY SSF111369 57 308 2.88E-13 T 23-04-2016 NIDE_RS15185 94d5e4b4d050f9193d18ee4056081979 330 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 244 3.6E-13 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS15185 94d5e4b4d050f9193d18ee4056081979 330 PANTHER PTHR32347 1 241 1.5E-24 T 23-04-2016 NIDE_RS15185 94d5e4b4d050f9193d18ee4056081979 330 Gene3D G3DSA:2.40.50.100 60 93 1.4E-12 T 23-04-2016 NIDE_RS15185 94d5e4b4d050f9193d18ee4056081979 330 Gene3D G3DSA:2.40.50.100 182 204 1.4E-12 T 23-04-2016 NIDE_RS18100 9bea3b5e319835aa2caae6eba5655b10 236 Gene3D G3DSA:3.10.290.10 1 61 5.6E-20 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS18100 9bea3b5e319835aa2caae6eba5655b10 236 PANTHER PTHR21600 1 226 1.0E-97 T 23-04-2016 NIDE_RS18100 9bea3b5e319835aa2caae6eba5655b10 236 PANTHER PTHR21600:SF24 1 226 1.0E-97 T 23-04-2016 NIDE_RS18100 9bea3b5e319835aa2caae6eba5655b10 236 Pfam PF01479 S4 domain 1 46 6.8E-12 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS18100 9bea3b5e319835aa2caae6eba5655b10 236 SUPERFAMILY SSF55120 60 222 7.4E-40 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS18100 9bea3b5e319835aa2caae6eba5655b10 236 SUPERFAMILY SSF55174 1 62 2.86E-13 T 23-04-2016 NIDE_RS18100 9bea3b5e319835aa2caae6eba5655b10 236 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 96 110 - T 23-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 NIDE_RS18100 9bea3b5e319835aa2caae6eba5655b10 236 SMART SM00363 1 57 5.1E-9 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS18100 9bea3b5e319835aa2caae6eba5655b10 236 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 65 217 1.6E-45 T 23-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 NIDE_RS18100 9bea3b5e319835aa2caae6eba5655b10 236 Pfam PF00849 RNA pseudouridylate synthase 61 134 2.7E-11 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 Gene3D G3DSA:3.40.50.620 147 285 8.7E-27 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 Gene3D G3DSA:3.40.50.620 2 144 1.0E-24 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 Pfam PF00582 Universal stress protein family 149 285 3.5E-20 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 Pfam PF00582 Universal stress protein family 2 142 3.6E-18 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 PANTHER PTHR31964 134 285 1.1E-18 T 23-04-2016 NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 SUPERFAMILY SSF52402 149 285 6.95E-25 T 23-04-2016 NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 SUPERFAMILY SSF52402 2 144 4.19E-23 T 23-04-2016 NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 PANTHER PTHR31964:SF26 134 285 1.1E-18 T 23-04-2016 NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 PRINTS PR01438 Universal stress protein signature 263 285 7.12E-14 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 PRINTS PR01438 Universal stress protein signature 245 257 7.12E-14 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS08415 8b3eb4ba9953d9f4fe96a79d65cdc6a1 285 PRINTS PR01438 Universal stress protein signature 148 166 7.12E-14 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS14510 3959db6bcc7b2d1de795f1e6b30ed967 154 Pfam PF00588 SpoU rRNA Methylase family 2 142 2.5E-34 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 NIDE_RS14510 3959db6bcc7b2d1de795f1e6b30ed967 154 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 150 4.4E-58 T 23-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 NIDE_RS14510 3959db6bcc7b2d1de795f1e6b30ed967 154 PANTHER PTHR12029:SF31 1 150 2.5E-72 T 23-04-2016 NIDE_RS14510 3959db6bcc7b2d1de795f1e6b30ed967 154 PANTHER PTHR12029 1 150 2.5E-72 T 23-04-2016 NIDE_RS14510 3959db6bcc7b2d1de795f1e6b30ed967 154 Gene3D G3DSA:3.40.1280.10 1 152 2.5E-65 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIDE_RS14510 3959db6bcc7b2d1de795f1e6b30ed967 154 SUPERFAMILY SSF75217 2 150 1.31E-43 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases NIDE_RS14510 3959db6bcc7b2d1de795f1e6b30ed967 154 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 33.377 T 23-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 NIDE_RS14510 3959db6bcc7b2d1de795f1e6b30ed967 154 PIRSF PIRSF029256 1 153 1.1E-65 T 23-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 NIDE_RS01865 65ee5b1fb019794ecae29cd97fcde3da 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.8E-15 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS01865 65ee5b1fb019794ecae29cd97fcde3da 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.8E-15 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS01865 65ee5b1fb019794ecae29cd97fcde3da 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.8E-15 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS01865 65ee5b1fb019794ecae29cd97fcde3da 90 Gene3D G3DSA:4.10.520.10 1 90 1.3E-33 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 NIDE_RS01865 65ee5b1fb019794ecae29cd97fcde3da 90 SUPERFAMILY SSF47729 1 90 1.06E-29 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 NIDE_RS01865 65ee5b1fb019794ecae29cd97fcde3da 90 PANTHER PTHR33175 1 90 3.5E-33 T 23-04-2016 NIDE_RS01865 65ee5b1fb019794ecae29cd97fcde3da 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 9.3E-31 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS01865 65ee5b1fb019794ecae29cd97fcde3da 90 SMART SM00411 1 90 7.4E-35 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS13815 baa09612bcc308aa1ff55dad28c3a7b6 244 PANTHER PTHR22572:SF13 2 243 1.5E-97 T 23-04-2016 NIDE_RS13815 baa09612bcc308aa1ff55dad28c3a7b6 244 Pfam PF00483 Nucleotidyl transferase 2 236 4.8E-50 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 NIDE_RS13815 baa09612bcc308aa1ff55dad28c3a7b6 244 SUPERFAMILY SSF53448 1 235 1.23E-68 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13815 baa09612bcc308aa1ff55dad28c3a7b6 244 PANTHER PTHR22572 2 243 1.5E-97 T 23-04-2016 NIDE_RS13815 baa09612bcc308aa1ff55dad28c3a7b6 244 Gene3D G3DSA:3.90.550.10 1 237 2.1E-62 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS06270 f01a804c987dcab3604ad84c6c7612a8 385 PIRSF PIRSF001455 12 372 8.1E-109 T 23-04-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 NIDE_RS06270 f01a804c987dcab3604ad84c6c7612a8 385 PANTHER PTHR21090 3 383 8.3E-162 T 23-04-2016 NIDE_RS06270 f01a804c987dcab3604ad84c6c7612a8 385 Gene3D G3DSA:3.40.50.1970 12 182 1.2E-66 T 23-04-2016 NIDE_RS06270 f01a804c987dcab3604ad84c6c7612a8 385 Pfam PF01761 3-dehydroquinate synthase 77 334 4.1E-103 T 23-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 NIDE_RS06270 f01a804c987dcab3604ad84c6c7612a8 385 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 11 366 40.597 T 23-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 NIDE_RS06270 f01a804c987dcab3604ad84c6c7612a8 385 SUPERFAMILY SSF56796 13 365 1.19E-108 T 23-04-2016 NIDE_RS06270 f01a804c987dcab3604ad84c6c7612a8 385 Gene3D G3DSA:1.20.1090.10 183 364 5.8E-62 T 23-04-2016 NIDE_RS06270 f01a804c987dcab3604ad84c6c7612a8 385 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 22 353 5.3E-117 T 23-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 157 1.1E-40 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 PRINTS PR01576 Peptide deformylase signature 105 123 1.1E-30 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 PRINTS PR01576 Peptide deformylase signature 124 153 1.1E-30 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 PRINTS PR01576 Peptide deformylase signature 93 104 1.1E-30 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 PRINTS PR01576 Peptide deformylase signature 33 62 1.1E-30 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 Pfam PF01327 Polypeptide deformylase 4 154 4.1E-40 T 23-04-2016 IPR023635 Peptide deformylase NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 Hamap MF_00163 Peptide deformylase [def]. 2 161 24.767 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 PIRSF PIRSF004749 1 163 5.9E-46 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 SUPERFAMILY SSF56420 2 161 1.57E-47 T 23-04-2016 IPR023635 Peptide deformylase NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 Gene3D G3DSA:3.90.45.10 4 161 5.5E-49 T 23-04-2016 IPR023635 Peptide deformylase NIDE_RS11880 7936c3a58678141fe4563daf01648bba 163 PANTHER PTHR10458 2 162 1.0E-51 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 PIRSF PIRSF000904 2 332 2.0E-117 T 23-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 PIRSF PIRSF500210 3 332 1.3E-120 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 PANTHER PTHR11556 6 330 3.6E-158 T 23-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 SUPERFAMILY SSF56655 6 328 1.62E-102 T 23-04-2016 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 Gene3D G3DSA:3.30.540.10 6 195 1.3E-67 T 23-04-2016 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 6 330 40.277 T 23-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 Gene3D G3DSA:3.40.190.80 196 329 9.9E-56 T 23-04-2016 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 6 193 3.9E-61 T 23-04-2016 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 205 232 5.7E-64 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 304 329 5.7E-64 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 179 202 5.7E-64 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 68 94 5.7E-64 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 31 58 5.7E-64 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 NIDE_RS13640 bb371e435673afd2991d95ef464105a4 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 148 171 5.7E-64 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 NIDE_RS01685 ab2a496713a661043c6892e4810b7a60 151 Pfam PF04519 Polymer-forming cytoskeletal 17 113 1.2E-24 T 23-04-2016 IPR007607 Protein of unknown function DUF583 NIDE_RS01685 ab2a496713a661043c6892e4810b7a60 151 PANTHER PTHR35024:SF2 17 125 1.7E-29 T 23-04-2016 NIDE_RS01685 ab2a496713a661043c6892e4810b7a60 151 PANTHER PTHR35024 17 125 1.7E-29 T 23-04-2016 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 Gene3D G3DSA:3.90.1440.10 255 371 1.7E-27 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 SMART SM00957 13 407 5.8E-138 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 SUPERFAMILY SSF81767 256 371 3.66E-26 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 Pfam PF07517 SecA DEAD-like domain 20 407 3.9E-100 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 PANTHER PTHR30612 212 625 3.1E-191 T 23-04-2016 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 PANTHER PTHR30612 64 193 3.1E-191 T 23-04-2016 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 Pfam PF01043 SecA preprotein cross-linking domain 256 362 2.8E-23 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 SUPERFAMILY SSF52540 21 249 5.71E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 SUPERFAMILY SSF52540 373 419 5.71E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 638 12.318 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 Gene3D G3DSA:3.40.50.300 423 577 5.3E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 ProSitePatterns PS01312 SecA family signature. 505 520 - T 23-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 Gene3D G3DSA:3.40.50.300 374 421 4.2E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 Gene3D G3DSA:3.40.50.300 23 249 4.2E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 SMART SM00958 253 363 8.9E-18 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 SUPERFAMILY SSF52540 422 574 2.57E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 PRINTS PR00906 SecA protein signature 172 192 9.1E-49 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 PRINTS PR00906 SecA protein signature 119 129 9.1E-49 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 PRINTS PR00906 SecA protein signature 65 89 9.1E-49 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 PRINTS PR00906 SecA protein signature 344 366 9.1E-49 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 PRINTS PR00906 SecA protein signature 381 398 9.1E-49 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 PRINTS PR00906 SecA protein signature 418 431 9.1E-49 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS12470 7c085d7f151d8e9a36af74300465222c 638 PRINTS PR00906 SecA protein signature 103 117 9.1E-49 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 NIDE_RS19280 244c87158cceff82ce618b02725a1a39 445 Gene3D G3DSA:1.10.860.10 12 114 2.7E-30 T 23-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal NIDE_RS19280 244c87158cceff82ce618b02725a1a39 445 SUPERFAMILY SSF52540 186 434 1.7E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19280 244c87158cceff82ce618b02725a1a39 445 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 11 442 2.3E-154 T 23-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 NIDE_RS19280 244c87158cceff82ce618b02725a1a39 445 Pfam PF03796 DnaB-like helicase C terminal domain 187 441 3.1E-106 T 23-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 NIDE_RS19280 244c87158cceff82ce618b02725a1a39 445 PANTHER PTHR30153 6 442 2.0E-169 T 23-04-2016 NIDE_RS19280 244c87158cceff82ce618b02725a1a39 445 SMART SM00382 204 393 0.0048 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS19280 244c87158cceff82ce618b02725a1a39 445 Pfam PF00772 DnaB-like helicase N terminal domain 12 113 1.6E-27 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 NIDE_RS19280 244c87158cceff82ce618b02725a1a39 445 SUPERFAMILY SSF48024 11 120 1.06E-27 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 NIDE_RS19280 244c87158cceff82ce618b02725a1a39 445 Gene3D G3DSA:3.40.50.300 174 442 6.4E-96 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14970 bebfeb0d52c4b40256ad3471a13ff79d 593 PANTHER PTHR11918:SF64 50 482 2.7E-46 T 23-04-2016 NIDE_RS14970 bebfeb0d52c4b40256ad3471a13ff79d 593 SUPERFAMILY SSF102114 302 484 3.4E-29 T 23-04-2016 NIDE_RS14970 bebfeb0d52c4b40256ad3471a13ff79d 593 Pfam PF02310 B12 binding domain 178 260 1.0E-7 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS14970 bebfeb0d52c4b40256ad3471a13ff79d 593 SMART SM00729 316 524 2.4E-22 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS14970 bebfeb0d52c4b40256ad3471a13ff79d 593 Gene3D G3DSA:3.80.30.20 317 485 2.9E-31 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS14970 bebfeb0d52c4b40256ad3471a13ff79d 593 PANTHER PTHR11918 50 482 2.7E-46 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS14970 bebfeb0d52c4b40256ad3471a13ff79d 593 Pfam PF04055 Radical SAM superfamily 321 482 1.8E-13 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS14970 bebfeb0d52c4b40256ad3471a13ff79d 593 SUPERFAMILY SSF52242 184 287 2.88E-6 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS00620 88ea6ea7c5b04d4aba2044550e432466 210 Pfam PF12635 Protein of unknown function (DUF3780) 23 199 2.1E-77 T 23-04-2016 IPR024220 Protein of unknown function DUF3780 NIDE_RS12185 fa47a1d044b8b847c066f2550727c3de 120 SUPERFAMILY SSF52172 2 120 9.39E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS12185 fa47a1d044b8b847c066f2550727c3de 120 Pfam PF00072 Response regulator receiver domain 4 116 7.6E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS12185 fa47a1d044b8b847c066f2550727c3de 120 PANTHER PTHR26402 2 119 8.8E-40 T 23-04-2016 NIDE_RS12185 fa47a1d044b8b847c066f2550727c3de 120 Gene3D G3DSA:3.40.50.2300 2 120 1.8E-32 T 23-04-2016 NIDE_RS12185 fa47a1d044b8b847c066f2550727c3de 120 PANTHER PTHR26402:SF404 2 119 8.8E-40 T 23-04-2016 NIDE_RS12185 fa47a1d044b8b847c066f2550727c3de 120 SMART SM00448 2 115 4.0E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS16125 2106dfc569289e20b5778243fb17f292 267 Pfam PF03929 PepSY-associated TM region 4 231 1.5E-10 T 23-04-2016 IPR005625 PepSY-associated TM protein NIDE_RS00035 61abbb6c3f461154ba7e1fea68f628b0 159 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 23-04-2016 IPR020081 SsrA-binding protein, conserved site NIDE_RS00035 61abbb6c3f461154ba7e1fea68f628b0 159 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 8.0E-39 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 NIDE_RS00035 61abbb6c3f461154ba7e1fea68f628b0 159 Pfam PF01668 SmpB protein 13 77 8.2E-31 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 NIDE_RS00035 61abbb6c3f461154ba7e1fea68f628b0 159 SUPERFAMILY SSF74982 8 138 3.4E-53 T 23-04-2016 IPR023620 Small protein B NIDE_RS00035 61abbb6c3f461154ba7e1fea68f628b0 159 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 5.3E-60 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 NIDE_RS00035 61abbb6c3f461154ba7e1fea68f628b0 159 Hamap MF_00023 SsrA-binding protein [smpB]. 1 159 71.291 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 NIDE_RS00035 61abbb6c3f461154ba7e1fea68f628b0 159 PANTHER PTHR30308 1 159 1.4E-81 T 23-04-2016 NIDE_RS00035 61abbb6c3f461154ba7e1fea68f628b0 159 PANTHER PTHR30308:SF2 1 159 1.4E-81 T 23-04-2016 NIDE_RS00035 61abbb6c3f461154ba7e1fea68f628b0 159 Gene3D G3DSA:2.40.280.10 12 133 2.5E-54 T 23-04-2016 IPR023620 Small protein B NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 Gene3D G3DSA:1.10.1160.10 233 313 3.0E-33 T 23-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 21 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 PANTHER PTHR11451 1 313 4.1E-100 T 23-04-2016 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 7 19 1.8E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 1.8E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 1.8E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 36 49 1.8E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 21 32 1.8E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 SUPERFAMILY SSF52374 3 298 1.8E-110 T 23-04-2016 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 Gene3D G3DSA:1.10.8.70 317 362 1.7E-5 T 23-04-2016 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 Gene3D G3DSA:3.90.800.10 70 180 9.7E-35 T 23-04-2016 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 305 2.0E-102 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 Gene3D G3DSA:1.10.10.350 369 463 8.8E-30 T 23-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 PANTHER PTHR11451:SF41 1 313 4.1E-100 T 23-04-2016 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 SUPERFAMILY SSF48163 299 463 5.36E-44 T 23-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 4 465 34.682 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 462 2.7E-167 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 Gene3D G3DSA:3.40.50.620 181 230 2.6E-51 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS18320 eb1ed9eaa710e48c40587d5fdd01e075 471 Gene3D G3DSA:3.40.50.620 3 69 2.6E-51 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 252 326 4.0E-25 T 23-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 Gene3D G3DSA:1.10.10.10 258 328 2.4E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 SMART SM00382 52 179 2.5E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 PANTHER PTHR13779 1 331 1.9E-167 T 23-04-2016 NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 254 327 6.4E-32 T 23-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 SUPERFAMILY SSF52540 21 249 4.24E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 5 236 1.8E-110 T 23-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 SUPERFAMILY SSF46785 258 328 2.12E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 Gene3D G3DSA:3.40.50.300 21 176 1.2E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 PANTHER PTHR13779:SF25 1 331 1.9E-167 T 23-04-2016 NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 Gene3D G3DSA:1.10.8.60 184 256 9.2E-29 T 23-04-2016 NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 345 158.821 T 23-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 NIDE_RS01930 e1f45082b6cdab09af18204ed4096a3a 345 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 25 327 9.6E-136 T 23-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 Gene3D G3DSA:3.40.1110.10 500 613 4.0E-20 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 686 705 1.8E-29 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 709 721 1.8E-29 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 331 345 1.8E-29 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 483 497 1.8E-29 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 633 643 1.8E-29 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 611 622 1.8E-29 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 SUPERFAMILY SSF47240 2 37 2.51E-6 T 23-04-2016 IPR009078 Ferritin-like superfamily NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 SUPERFAMILY SSF81665 247 284 2.62E-13 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 SUPERFAMILY SSF81665 382 477 2.62E-13 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 SUPERFAMILY SSF81665 735 767 2.62E-13 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 SUPERFAMILY SSF56784 540 793 3.24E-59 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 SUPERFAMILY SSF56784 481 501 3.24E-59 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 207 795 8.7E-185 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 SUPERFAMILY SSF81653 283 381 5.1E-28 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 Gene3D G3DSA:3.40.50.1000 614 754 4.4E-55 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 Gene3D G3DSA:3.40.50.1000 454 499 4.4E-55 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 252 764 1.1E-91 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 Pfam PF04945 YHS domain 1 39 1.3E-12 T 23-04-2016 IPR007029 YHS domain NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PANTHER PTHR24093 147 796 1.7E-232 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 188 796 3.3E-175 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 485 491 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 Gene3D G3DSA:2.70.150.10 245 381 1.9E-31 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00943 Copper-transporting ATPase signature 192 211 2.1E-15 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00943 Copper-transporting ATPase signature 466 481 2.1E-15 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00943 Copper-transporting ATPase signature 663 680 2.1E-15 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00943 Copper-transporting ATPase signature 270 288 2.1E-15 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00943 Copper-transporting ATPase signature 250 269 2.1E-15 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 PRINTS PR00943 Copper-transporting ATPase signature 404 418 2.1E-15 T 23-04-2016 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 Pfam PF00122 E1-E2 ATPase 251 474 9.4E-67 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 NIDE_RS03130 6cc9099119664d917369c29ecda2e9b5 800 Pfam PF00702 haloacid dehalogenase-like hydrolase 479 700 1.2E-42 T 23-04-2016 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SUPERFAMILY SSF55785 504 634 2.27E-24 T 23-04-2016 IPR000014 PAS domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SUPERFAMILY SSF55874 710 879 7.86E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Gene3D G3DSA:3.30.450.20 503 649 3.1E-41 T 23-04-2016 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Gene3D G3DSA:1.20.120.160 1092 1203 3.5E-21 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SMART SM00086 594 636 3.0E-10 T 23-04-2016 IPR001610 PAC motif NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SMART SM00086 467 507 0.35 T 23-04-2016 IPR001610 PAC motif NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SUPERFAMILY SSF52172 932 1061 6.83E-42 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SMART SM00448 933 1049 2.4E-42 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Gene3D G3DSA:1.10.287.130 650 717 6.3E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SUPERFAMILY SSF47384 641 722 1.49E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Pfam PF08447 PAS fold 542 630 6.0E-22 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Gene3D G3DSA:3.40.50.2300 931 1064 3.2E-46 T 23-04-2016 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Pfam PF01627 Hpt domain 1117 1190 5.7E-10 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SMART SM00065 231 383 2.9E-10 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 768 881 3.4E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Gene3D G3DSA:3.30.565.10 722 880 1.6E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SUPERFAMILY SSF55781 232 374 1.86E-20 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SUPERFAMILY SSF55785 66 194 2.44E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SUPERFAMILY SSF47226 1088 1209 3.01E-23 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Pfam PF00072 Response regulator receiver domain 935 1048 1.7E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SMART SM00387 768 886 2.3E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Pfam PF00989 PAS fold 80 194 6.8E-9 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Pfam PF00989 PAS fold 391 490 3.2E-14 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SMART SM00388 656 721 2.7E-25 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Gene3D G3DSA:3.30.450.20 76 194 1.0E-17 T 23-04-2016 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 PANTHER PTHR24423 594 1053 2.4E-195 T 23-04-2016 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 PANTHER PTHR24423 388 462 2.4E-195 T 23-04-2016 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 PANTHER PTHR24423 66 212 2.4E-195 T 23-04-2016 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Pfam PF01590 GAF domain 232 373 1.7E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 PRINTS PR00344 Bacterial sensor protein C-terminal signature 844 862 1.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 PRINTS PR00344 Bacterial sensor protein C-terminal signature 868 881 1.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 PRINTS PR00344 Bacterial sensor protein C-terminal signature 809 823 1.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 PRINTS PR00344 Bacterial sensor protein C-terminal signature 827 837 1.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Gene3D G3DSA:3.30.450.20 377 502 5.8E-26 T 23-04-2016 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 78 201 8.7E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 386 514 1.1E-26 T 23-04-2016 IPR000014 PAS domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 515 643 3.4E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Gene3D G3DSA:3.30.450.40 213 375 3.2E-15 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SMART SM00091 390 457 5.3E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SMART SM00091 78 144 4.5E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SMART SM00091 519 587 1.5E-4 T 23-04-2016 IPR000014 PAS domain NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 Pfam PF00512 His Kinase A (phospho-acceptor) domain 656 721 1.9E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20240 08357f1c494f171546db60ff1e1a1e28 1210 SUPERFAMILY SSF55785 402 515 5.76E-28 T 23-04-2016 IPR000014 PAS domain NIDE_RS06210 2f48d3cea331cc30d9f708d471fb5948 153 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 3 147 1.0E-20 T 23-04-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 NIDE_RS06210 2f48d3cea331cc30d9f708d471fb5948 153 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 7 146 1.5E-13 T 23-04-2016 IPR010664 Lipopolysaccharide assembly, LptC-related NIDE_RS02215 6bcb5781306fb0a934001a52f7d98e63 402 PANTHER PTHR11986:SF79 10 401 4.4E-196 T 23-04-2016 NIDE_RS02215 6bcb5781306fb0a934001a52f7d98e63 402 Pfam PF00202 Aminotransferase class-III 18 393 1.4E-125 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS02215 6bcb5781306fb0a934001a52f7d98e63 402 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 11 394 47.891 T 23-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 NIDE_RS02215 6bcb5781306fb0a934001a52f7d98e63 402 PANTHER PTHR11986 10 401 4.4E-196 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS02215 6bcb5781306fb0a934001a52f7d98e63 402 SUPERFAMILY SSF53383 11 394 4.17E-135 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS02215 6bcb5781306fb0a934001a52f7d98e63 402 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 13 393 7.7E-164 T 23-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 NIDE_RS02215 6bcb5781306fb0a934001a52f7d98e63 402 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 220 257 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS02215 6bcb5781306fb0a934001a52f7d98e63 402 Gene3D G3DSA:3.40.640.10 58 299 2.9E-96 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS02215 6bcb5781306fb0a934001a52f7d98e63 402 Gene3D G3DSA:3.90.1150.10 6 57 1.4E-40 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS02215 6bcb5781306fb0a934001a52f7d98e63 402 Gene3D G3DSA:3.90.1150.10 304 394 1.4E-40 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS07530 f5ad70b6de5ef3e5d654b10e8852f006 199 Pfam PF13649 Methyltransferase domain 45 134 1.1E-11 T 23-04-2016 NIDE_RS07530 f5ad70b6de5ef3e5d654b10e8852f006 199 Gene3D G3DSA:3.40.50.150 6 183 1.3E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS07530 f5ad70b6de5ef3e5d654b10e8852f006 199 SUPERFAMILY SSF53335 8 189 1.41E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 SUPERFAMILY SSF49503 1496 1594 6.37E-6 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 Gene3D G3DSA:2.60.40.420 411 544 6.2E-9 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 SUPERFAMILY SSF49503 1290 1394 7.47E-5 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 Gene3D G3DSA:2.60.40.420 147 316 3.2E-14 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 Gene3D G3DSA:2.60.40.420 1292 1402 1.5E-10 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 SUPERFAMILY SSF49503 1104 1207 3.23E-7 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 Gene3D G3DSA:2.60.40.420 893 894 1.5E-4 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 Gene3D G3DSA:2.60.40.420 817 839 1.5E-4 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 Gene3D G3DSA:2.60.40.420 939 966 1.5E-4 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 SUPERFAMILY SSF49503 489 558 3.52E-10 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 SUPERFAMILY SSF49503 159 255 3.52E-10 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 SUPERFAMILY SSF49503 388 543 4.78E-12 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 Pfam PF07732 Multicopper oxidase 208 313 1.5E-6 T 23-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 NIDE_RS16110 232c15369575b807bd0b75261f8452bc 1627 ProSitePatterns PS00080 Multicopper oxidases signature 2. 525 536 - T 23-04-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 NIDE_RS01940 68fe2dc3dc5f614451f0954a0984167d 361 PANTHER PTHR11751:SF347 7 360 1.8E-93 T 23-04-2016 NIDE_RS01940 68fe2dc3dc5f614451f0954a0984167d 361 Gene3D G3DSA:3.90.1150.10 254 355 6.9E-32 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS01940 68fe2dc3dc5f614451f0954a0984167d 361 Pfam PF00155 Aminotransferase class I and II 33 346 3.1E-54 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NIDE_RS01940 68fe2dc3dc5f614451f0954a0984167d 361 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 357 59.613 T 23-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 NIDE_RS01940 68fe2dc3dc5f614451f0954a0984167d 361 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 7 355 1.1E-104 T 23-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 NIDE_RS01940 68fe2dc3dc5f614451f0954a0984167d 361 PANTHER PTHR11751 7 360 1.8E-93 T 23-04-2016 NIDE_RS01940 68fe2dc3dc5f614451f0954a0984167d 361 Gene3D G3DSA:3.40.640.10 60 253 6.1E-62 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS01940 68fe2dc3dc5f614451f0954a0984167d 361 SUPERFAMILY SSF53383 13 355 2.72E-83 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS00055 25f7268f77d8ed5ba9354bf698ea7019 213 Gene3D G3DSA:3.40.30.10 6 210 3.2E-53 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS00055 25f7268f77d8ed5ba9354bf698ea7019 213 SUPERFAMILY SSF52833 6 211 5.25E-54 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS00055 25f7268f77d8ed5ba9354bf698ea7019 213 PANTHER PTHR13887:SF10 1 212 5.3E-65 T 23-04-2016 NIDE_RS00055 25f7268f77d8ed5ba9354bf698ea7019 213 Pfam PF01323 DSBA-like thioredoxin domain 7 209 4.5E-49 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 NIDE_RS00055 25f7268f77d8ed5ba9354bf698ea7019 213 PANTHER PTHR13887 1 212 5.3E-65 T 23-04-2016 NIDE_RS19210 09dad3c8f08e0c894880e69a21c87800 124 SUPERFAMILY SSF141371 27 122 5.49E-11 T 23-04-2016 NIDE_RS19210 09dad3c8f08e0c894880e69a21c87800 124 Gene3D G3DSA:2.40.10.220 27 121 1.3E-4 T 23-04-2016 NIDE_RS19210 09dad3c8f08e0c894880e69a21c87800 124 Pfam PF07238 PilZ domain 25 121 9.8E-10 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS17800 9494928f2ea719e3e87f4aaf400ce531 320 Pfam PF02470 MlaD protein 40 114 7.7E-13 T 23-04-2016 IPR003399 Mce/MlaD NIDE_RS17800 9494928f2ea719e3e87f4aaf400ce531 320 PANTHER PTHR36698:SF2 2 314 1.2E-53 T 23-04-2016 NIDE_RS17800 9494928f2ea719e3e87f4aaf400ce531 320 PANTHER PTHR36698 2 314 1.2E-53 T 23-04-2016 NIDE_RS07025 e17054d84ed29c73085c0da07232b180 303 Gene3D G3DSA:1.10.600.10 15 299 2.9E-83 T 23-04-2016 IPR008949 Isoprenoid synthase domain NIDE_RS07025 e17054d84ed29c73085c0da07232b180 303 SUPERFAMILY SSF48576 19 297 4.56E-79 T 23-04-2016 IPR008949 Isoprenoid synthase domain NIDE_RS07025 e17054d84ed29c73085c0da07232b180 303 TIGRFAM TIGR03465 HpnD: squalene synthase HpnD 27 294 1.1E-94 T 23-04-2016 IPR017828 Squalene/phytoene synthase HpnD GO:0016117|GO:0016767 NIDE_RS07025 e17054d84ed29c73085c0da07232b180 303 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 138 153 - T 23-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 NIDE_RS07025 e17054d84ed29c73085c0da07232b180 303 Pfam PF00494 Squalene/phytoene synthase 28 281 5.3E-74 T 23-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 NIDE_RS07025 e17054d84ed29c73085c0da07232b180 303 PANTHER PTHR31480:SF5 18 290 8.5E-77 T 23-04-2016 NIDE_RS07025 e17054d84ed29c73085c0da07232b180 303 PANTHER PTHR31480 18 290 8.5E-77 T 23-04-2016 NIDE_RS07025 e17054d84ed29c73085c0da07232b180 303 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 168 193 - T 23-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 NIDE_RS07075 b064358a191b976cb3160edf83f79b7e 282 Gene3D G3DSA:3.20.20.140 1 87 3.9E-45 T 23-04-2016 NIDE_RS07075 b064358a191b976cb3160edf83f79b7e 282 Gene3D G3DSA:3.20.20.140 156 266 3.9E-45 T 23-04-2016 NIDE_RS07075 b064358a191b976cb3160edf83f79b7e 282 SUPERFAMILY SSF89550 2 82 1.29E-47 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 NIDE_RS07075 b064358a191b976cb3160edf83f79b7e 282 SUPERFAMILY SSF89550 164 261 1.29E-47 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 NIDE_RS07075 b064358a191b976cb3160edf83f79b7e 282 SMART SM00481 4 69 4.2E-15 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 NIDE_RS07075 b064358a191b976cb3160edf83f79b7e 282 PANTHER PTHR30007:SF4 1 253 1.8E-66 T 23-04-2016 NIDE_RS07075 b064358a191b976cb3160edf83f79b7e 282 Pfam PF02811 PHP domain 5 79 8.1E-8 T 23-04-2016 IPR004013 PHP domain GO:0003824 NIDE_RS07075 b064358a191b976cb3160edf83f79b7e 282 PANTHER PTHR30007 1 253 1.8E-66 T 23-04-2016 NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 Pfam PF13247 4Fe-4S dicluster domain 179 279 4.0E-26 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 SUPERFAMILY SSF54862 23 352 1.51E-48 T 23-04-2016 NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 Gene3D G3DSA:3.30.70.20 194 245 4.1E-19 T 23-04-2016 NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 PANTHER PTHR11938:SF8 154 278 4.8E-40 T 23-04-2016 NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 PANTHER PTHR11938:SF8 25 50 4.8E-40 T 23-04-2016 NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 PANTHER PTHR11938 154 278 4.8E-40 T 23-04-2016 NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 PANTHER PTHR11938 25 50 4.8E-40 T 23-04-2016 NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 Gene3D G3DSA:3.30.70.20 288 354 2.8E-6 T 23-04-2016 NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 Gene3D G3DSA:3.30.70.20 246 279 4.0E-18 T 23-04-2016 NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 Gene3D G3DSA:3.30.70.20 25 63 4.0E-18 T 23-04-2016 NIDE_RS14785 420cd940ee552ee1fdfa61522b61a34d 429 Gene3D G3DSA:3.30.70.20 172 193 4.0E-18 T 23-04-2016 NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 Pfam PF13247 4Fe-4S dicluster domain 179 279 4.0E-26 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 SUPERFAMILY SSF54862 23 352 1.51E-48 T 23-04-2016 NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 Gene3D G3DSA:3.30.70.20 194 245 4.1E-19 T 23-04-2016 NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 PANTHER PTHR11938:SF8 154 278 4.8E-40 T 23-04-2016 NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 PANTHER PTHR11938:SF8 25 50 4.8E-40 T 23-04-2016 NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 PANTHER PTHR11938 154 278 4.8E-40 T 23-04-2016 NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 PANTHER PTHR11938 25 50 4.8E-40 T 23-04-2016 NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 Gene3D G3DSA:3.30.70.20 288 354 2.8E-6 T 23-04-2016 NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 Gene3D G3DSA:3.30.70.20 246 279 4.0E-18 T 23-04-2016 NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 Gene3D G3DSA:3.30.70.20 25 63 4.0E-18 T 23-04-2016 NIDE_RS14880 420cd940ee552ee1fdfa61522b61a34d 429 Gene3D G3DSA:3.30.70.20 172 193 4.0E-18 T 23-04-2016 NIDE_RS11535 2b39459c5212a042c3b6470c8ae4bc99 385 PANTHER PTHR10804 21 167 3.0E-70 T 23-04-2016 NIDE_RS11535 2b39459c5212a042c3b6470c8ae4bc99 385 PANTHER PTHR10804 184 380 3.0E-70 T 23-04-2016 NIDE_RS11535 2b39459c5212a042c3b6470c8ae4bc99 385 Pfam PF00557 Metallopeptidase family M24 148 369 2.3E-43 T 23-04-2016 IPR000994 Peptidase M24, structural domain NIDE_RS11535 2b39459c5212a042c3b6470c8ae4bc99 385 Gene3D G3DSA:3.40.350.10 24 121 5.5E-4 T 23-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal NIDE_RS11535 2b39459c5212a042c3b6470c8ae4bc99 385 Gene3D G3DSA:3.90.230.10 140 381 5.6E-54 T 23-04-2016 IPR000994 Peptidase M24, structural domain NIDE_RS11535 2b39459c5212a042c3b6470c8ae4bc99 385 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 316 328 - T 23-04-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site NIDE_RS11535 2b39459c5212a042c3b6470c8ae4bc99 385 PANTHER PTHR10804:SF110 21 167 3.0E-70 T 23-04-2016 NIDE_RS11535 2b39459c5212a042c3b6470c8ae4bc99 385 PANTHER PTHR10804:SF110 184 380 3.0E-70 T 23-04-2016 NIDE_RS11535 2b39459c5212a042c3b6470c8ae4bc99 385 SUPERFAMILY SSF55920 142 380 1.7E-48 T 23-04-2016 IPR000994 Peptidase M24, structural domain NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 22 512 6.2E-191 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 201 207 - T 23-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 213 512 5.8E-118 T 23-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 PANTHER PTHR23429 21 512 7.4E-222 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 SUPERFAMILY SSF55347 201 512 9.16E-113 T 23-04-2016 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 26 211 2.8E-59 T 23-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 SUPERFAMILY SSF51735 15 214 2.56E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 PIRSF PIRSF000110 9 514 3.3E-179 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 Gene3D G3DSA:3.30.360.10 211 512 2.3E-122 T 23-04-2016 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 22 513 82.01 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 Gene3D G3DSA:3.40.50.720 21 210 1.1E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 PANTHER PTHR23429:SF0 21 512 7.4E-222 T 23-04-2016 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 352 378 9.0E-49 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 261 277 9.0E-49 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 191 219 9.0E-49 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 243 260 9.0E-49 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS10075 de6ca6f5794b0444d7168cdf78fc5988 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 167 180 9.0E-49 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 NIDE_RS04625 366b5fced61737761ea1ba94774259b9 358 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 356 50.351 T 23-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 NIDE_RS04625 366b5fced61737761ea1ba94774259b9 358 PANTHER PTHR11835 4 356 6.1E-192 T 23-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 NIDE_RS04625 366b5fced61737761ea1ba94774259b9 358 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 23-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 NIDE_RS04625 366b5fced61737761ea1ba94774259b9 358 PANTHER PTHR11835:SF35 4 356 6.1E-192 T 23-04-2016 NIDE_RS04625 366b5fced61737761ea1ba94774259b9 358 Gene3D G3DSA:3.40.718.10 2 356 6.3E-131 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 NIDE_RS04625 366b5fced61737761ea1ba94774259b9 358 SMART SM01329 4 352 1.1E-197 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 NIDE_RS04625 366b5fced61737761ea1ba94774259b9 358 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 351 3.6E-155 T 23-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 NIDE_RS04625 366b5fced61737761ea1ba94774259b9 358 SUPERFAMILY SSF53659 3 356 2.3E-121 T 23-04-2016 NIDE_RS04625 366b5fced61737761ea1ba94774259b9 358 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 352 3.1E-137 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 NIDE_RS07820 e8a2625e65642d53158cbf30e1d91c14 359 Pfam PF13524 Glycosyl transferases group 1 189 283 2.0E-21 T 23-04-2016 NIDE_RS07820 e8a2625e65642d53158cbf30e1d91c14 359 SUPERFAMILY SSF53756 12 284 7.85E-7 T 23-04-2016 NIDE_RS17365 fdcc49ddf470e62ad01194c809aa5de2 242 PANTHER PTHR24220:SF504 7 236 1.5E-80 T 23-04-2016 NIDE_RS17365 fdcc49ddf470e62ad01194c809aa5de2 242 Gene3D G3DSA:3.40.50.300 4 226 9.8E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17365 fdcc49ddf470e62ad01194c809aa5de2 242 SMART SM00382 30 218 4.7E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS17365 fdcc49ddf470e62ad01194c809aa5de2 242 PANTHER PTHR24220 7 236 1.5E-80 T 23-04-2016 NIDE_RS17365 fdcc49ddf470e62ad01194c809aa5de2 242 Pfam PF00005 ABC transporter 21 162 4.2E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS17365 fdcc49ddf470e62ad01194c809aa5de2 242 SUPERFAMILY SSF52540 4 224 8.95E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14245 3d601c0b394b50b6880b695ee9827c6f 198 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 117 8.3E-16 T 23-04-2016 NIDE_RS14245 3d601c0b394b50b6880b695ee9827c6f 198 Gene3D G3DSA:3.10.180.10 5 161 7.8E-32 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS14245 3d601c0b394b50b6880b695ee9827c6f 198 SUPERFAMILY SSF54593 5 144 1.79E-31 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 Gene3D G3DSA:3.30.70.100 22 89 5.1E-21 T 23-04-2016 NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 Pfam PF00403 Heavy-metal-associated domain 25 85 8.5E-14 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 TIGRFAM TIGR02052 MerP: mercuric transport protein periplasmic component 2 89 1.4E-39 T 23-04-2016 IPR011795 Mercuric transport protein periplasmic component GO:0015097|GO:0015694|GO:0042597|GO:0045340|GO:0046689 NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 SUPERFAMILY SSF55008 17 91 7.2E-20 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 PRINTS PR00946 Mercury scavenger protein signature 2 20 2.3E-43 T 23-04-2016 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 PRINTS PR00946 Mercury scavenger protein signature 20 31 2.3E-43 T 23-04-2016 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 PRINTS PR00946 Mercury scavenger protein signature 47 62 2.3E-43 T 23-04-2016 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 PRINTS PR00946 Mercury scavenger protein signature 62 76 2.3E-43 T 23-04-2016 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 PRINTS PR00946 Mercury scavenger protein signature 31 47 2.3E-43 T 23-04-2016 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 PRINTS PR00946 Mercury scavenger protein signature 76 90 2.3E-43 T 23-04-2016 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 NIDE_RS00320 31b61e0d5b51cd8b3c3968510d06e971 94 ProSitePatterns PS01047 Heavy-metal-associated domain. 28 57 - T 23-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 NIDE_RS00125 a3efe97feb50b6f1ee2d985bb15940b0 213 PANTHER PTHR15020:SF29 2 213 1.2E-82 T 23-04-2016 NIDE_RS00125 a3efe97feb50b6f1ee2d985bb15940b0 213 Gene3D G3DSA:3.40.50.720 2 213 6.9E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00125 a3efe97feb50b6f1ee2d985bb15940b0 213 Pfam PF13460 NAD(P)H-binding 7 198 2.6E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00125 a3efe97feb50b6f1ee2d985bb15940b0 213 PANTHER PTHR15020 2 213 1.2E-82 T 23-04-2016 NIDE_RS00125 a3efe97feb50b6f1ee2d985bb15940b0 213 SUPERFAMILY SSF51735 2 212 3.08E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 SMART SM00387 538 645 7.8E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 SUPERFAMILY SSF55874 486 641 5.24E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 Gene3D G3DSA:3.30.565.10 503 641 1.3E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 PANTHER PTHR24423 368 641 3.5E-57 T 23-04-2016 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 PANTHER PTHR24423 1 11 3.5E-57 T 23-04-2016 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 Gene3D G3DSA:1.10.287.130 425 492 5.6E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 539 642 9.9E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 SUPERFAMILY SSF47384 425 494 2.75E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 SMART SM00388 430 496 1.3E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 SUPERFAMILY SSF103190 123 213 3.66E-5 T 23-04-2016 IPR029151 Periplasmic sensor domain-like NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 Pfam PF00512 His Kinase A (phospho-acceptor) domain 431 493 1.5E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 Pfam PF02743 Cache domain 44 310 1.9E-28 T 23-04-2016 IPR033479 Double Cache domain 1 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 590 1.7E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 PRINTS PR00344 Bacterial sensor protein C-terminal signature 605 623 1.7E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 PRINTS PR00344 Bacterial sensor protein C-terminal signature 594 604 1.7E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 642 1.7E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 PANTHER PTHR24423:SF445 368 641 3.5E-57 T 23-04-2016 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 PANTHER PTHR24423:SF445 1 11 3.5E-57 T 23-04-2016 NIDE_RS05170 46d9a89d1af3c518b06d7305166430fb 645 Gene3D G3DSA:3.30.450.20 122 213 8.4E-8 T 23-04-2016 NIDE_RS01775 7abd01aaea3cc16ddc89419e3e07fd27 394 SUPERFAMILY SSF53067 149 336 1.94E-15 T 23-04-2016 NIDE_RS01775 7abd01aaea3cc16ddc89419e3e07fd27 394 SUPERFAMILY SSF53067 1 110 1.94E-15 T 23-04-2016 NIDE_RS01775 7abd01aaea3cc16ddc89419e3e07fd27 394 Pfam PF03702 Uncharacterised protein family (UPF0075) 2 380 2.7E-104 T 23-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 NIDE_RS01775 7abd01aaea3cc16ddc89419e3e07fd27 394 Gene3D G3DSA:3.30.420.40 1 205 2.3E-66 T 23-04-2016 NIDE_RS01775 7abd01aaea3cc16ddc89419e3e07fd27 394 PANTHER PTHR30605:SF0 1 386 5.6E-146 T 23-04-2016 NIDE_RS01775 7abd01aaea3cc16ddc89419e3e07fd27 394 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 1 381 36.341 T 23-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 NIDE_RS01775 7abd01aaea3cc16ddc89419e3e07fd27 394 PANTHER PTHR30605 1 386 5.6E-146 T 23-04-2016 NIDE_RS04530 6c66b3d050e927fbdadc2ebb5139ae54 256 PANTHER PTHR21235 1 255 8.1E-130 T 23-04-2016 NIDE_RS04530 6c66b3d050e927fbdadc2ebb5139ae54 256 PANTHER PTHR21235:SF2 1 255 8.1E-130 T 23-04-2016 NIDE_RS04530 6c66b3d050e927fbdadc2ebb5139ae54 256 Pfam PF00977 Histidine biosynthesis protein 5 236 8.1E-92 T 23-04-2016 IPR006062 Histidine biosynthesis GO:0000105 NIDE_RS04530 6c66b3d050e927fbdadc2ebb5139ae54 256 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 252 7.6E-118 T 23-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 NIDE_RS04530 6c66b3d050e927fbdadc2ebb5139ae54 256 SUPERFAMILY SSF51366 1 252 1.65E-86 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 NIDE_RS04530 6c66b3d050e927fbdadc2ebb5139ae54 256 Gene3D G3DSA:3.20.20.70 4 253 1.5E-110 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS04530 6c66b3d050e927fbdadc2ebb5139ae54 256 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 252 48.758 T 23-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 NIDE_RS07165 4043f585d18193f87ccf5df2375f3c83 401 Pfam PF13657 HipA N-terminal domain 8 105 1.3E-20 T 23-04-2016 IPR017508 HipA, N-terminal subdomain 1 NIDE_RS07165 4043f585d18193f87ccf5df2375f3c83 401 Pfam PF07805 HipA-like N-terminal domain 132 215 2.5E-16 T 23-04-2016 IPR012894 HipA, N-terminal subdomain 2 NIDE_RS07165 4043f585d18193f87ccf5df2375f3c83 401 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 8 105 2.0E-19 T 23-04-2016 IPR017508 HipA, N-terminal subdomain 1 NIDE_RS07165 4043f585d18193f87ccf5df2375f3c83 401 Pfam PF07804 HipA-like C-terminal domain 221 353 1.2E-27 T 23-04-2016 IPR012893 HipA-like, C-terminal NIDE_RS07165 4043f585d18193f87ccf5df2375f3c83 401 PANTHER PTHR37419 1 399 2.3E-20 T 23-04-2016 NIDE_RS07300 62d103b6fd6dd9a10da2afee781ca214 380 SMART SM00448 14 124 8.0E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS07300 62d103b6fd6dd9a10da2afee781ca214 380 SUPERFAMILY SSF109604 193 362 1.06E-22 T 23-04-2016 NIDE_RS07300 62d103b6fd6dd9a10da2afee781ca214 380 SMART SM00471 196 331 2.1E-7 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS07300 62d103b6fd6dd9a10da2afee781ca214 380 Pfam PF13487 HD domain 262 312 2.4E-13 T 23-04-2016 NIDE_RS07300 62d103b6fd6dd9a10da2afee781ca214 380 TIGRFAM TIGR00277 HDIG: HDIG domain 199 290 4.3E-11 T 23-04-2016 IPR006675 HDIG domain NIDE_RS07300 62d103b6fd6dd9a10da2afee781ca214 380 Gene3D G3DSA:3.40.50.2300 15 135 5.4E-32 T 23-04-2016 NIDE_RS07300 62d103b6fd6dd9a10da2afee781ca214 380 Pfam PF00072 Response regulator receiver domain 16 124 4.9E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS07300 62d103b6fd6dd9a10da2afee781ca214 380 PANTHER PTHR26402 14 135 1.1E-32 T 23-04-2016 NIDE_RS07300 62d103b6fd6dd9a10da2afee781ca214 380 Gene3D G3DSA:1.10.3210.10 187 371 4.1E-19 T 23-04-2016 IPR006674 HD domain NIDE_RS07300 62d103b6fd6dd9a10da2afee781ca214 380 SUPERFAMILY SSF52172 12 140 2.28E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20915 e40c7aed6eaf402344fe6c6078402603 411 PRINTS PR01217 Proline rich extensin signature 219 244 7.0E-10 T 23-04-2016 NIDE_RS20915 e40c7aed6eaf402344fe6c6078402603 411 PRINTS PR01217 Proline rich extensin signature 121 137 7.0E-10 T 23-04-2016 NIDE_RS20915 e40c7aed6eaf402344fe6c6078402603 411 PRINTS PR01217 Proline rich extensin signature 92 113 7.0E-10 T 23-04-2016 NIDE_RS20915 e40c7aed6eaf402344fe6c6078402603 411 PRINTS PR01217 Proline rich extensin signature 138 155 7.0E-10 T 23-04-2016 NIDE_RS20915 e40c7aed6eaf402344fe6c6078402603 411 Pfam PF13103 TonB C terminal 318 402 2.0E-16 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS20915 e40c7aed6eaf402344fe6c6078402603 411 SUPERFAMILY SSF74653 307 406 1.83E-19 T 23-04-2016 NIDE_RS20915 e40c7aed6eaf402344fe6c6078402603 411 Gene3D G3DSA:3.30.1150.10 310 405 9.0E-22 T 23-04-2016 NIDE_RS20915 e40c7aed6eaf402344fe6c6078402603 411 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 345 405 1.1E-11 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS17750 08661b8c5725a237900671f440b41e53 121 PRINTS PR00605 Class IC cytochrome C signature 87 109 7.0E-5 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 NIDE_RS17750 08661b8c5725a237900671f440b41e53 121 PRINTS PR00605 Class IC cytochrome C signature 39 50 7.0E-5 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 NIDE_RS17750 08661b8c5725a237900671f440b41e53 121 Gene3D G3DSA:1.10.760.10 25 115 3.7E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17750 08661b8c5725a237900671f440b41e53 121 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 29 109 4.2E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17750 08661b8c5725a237900671f440b41e53 121 SUPERFAMILY SSF46626 9 113 3.06E-22 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 4 301 1.1E-84 T 23-04-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 PANTHER PTHR21708 1 298 5.5E-74 T 23-04-2016 NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 SUPERFAMILY SSF51735 3 153 1.62E-13 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 Gene3D G3DSA:1.10.1040.10 177 302 1.7E-37 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 SUPERFAMILY SSF48179 177 299 3.23E-32 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 Gene3D G3DSA:3.40.50.720 2 175 4.2E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 177 299 3.5E-36 T 23-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 Pfam PF00174 Oxidoreductase molybdopterin binding domain 353 434 8.6E-10 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 Pfam PF02558 Ketopantoate reductase PanE/ApbA 4 150 3.0E-36 T 23-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 Gene3D G3DSA:3.90.420.10 309 434 4.5E-11 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 PANTHER PTHR21708:SF24 1 298 5.5E-74 T 23-04-2016 NIDE_RS07975 7b1f55735988163e9572b4a1c5b9c907 454 SUPERFAMILY SSF56524 310 433 9.94E-12 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 SUPERFAMILY SSF46689 357 445 1.21E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 Gene3D G3DSA:3.40.50.2300 2 127 1.3E-33 T 23-04-2016 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 PANTHER PTHR32071 1 456 1.7E-186 T 23-04-2016 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 SMART SM00448 4 115 1.8E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 Pfam PF00158 Sigma-54 interaction domain 145 310 4.6E-68 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 Gene3D G3DSA:1.10.10.60 398 445 1.6E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 Gene3D G3DSA:3.40.50.300 142 316 8.7E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 SMART SM00382 164 307 3.9E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 SUPERFAMILY SSF52172 1 188 5.69E-42 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 Pfam PF02954 Bacterial regulatory protein, Fis family 404 442 7.9E-5 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 SUPERFAMILY SSF52540 143 386 3.63E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 Gene3D G3DSA:1.10.8.60 317 388 2.0E-27 T 23-04-2016 NIDE_RS10380 17253b23ae6efb340e47a41b6110441e 471 Pfam PF00072 Response regulator receiver domain 6 115 3.0E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14775 cd77125dc94f69bb0746a98f1af7aac5 120 Pfam PF04343 Protein of unknown function, DUF488 3 112 1.0E-32 T 23-04-2016 IPR007438 Protein of unknown function DUF488 NIDE_RS14775 cd77125dc94f69bb0746a98f1af7aac5 120 PANTHER PTHR36849:SF1 1 119 1.6E-49 T 23-04-2016 NIDE_RS14775 cd77125dc94f69bb0746a98f1af7aac5 120 PANTHER PTHR36849 1 119 1.6E-49 T 23-04-2016 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 187 200 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 SUPERFAMILY SSF100934 493 603 1.43E-23 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 SUPERFAMILY SSF53067 182 371 2.59E-56 T 23-04-2016 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 4 603 7.6E-217 T 23-04-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 Gene3D G3DSA:3.30.420.40 2 70 3.9E-60 T 23-04-2016 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 Gene3D G3DSA:3.30.420.40 111 182 3.9E-60 T 23-04-2016 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 Gene3D G3DSA:1.20.1270.10 517 603 6.7E-19 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 Gene3D G3DSA:3.90.640.10 221 302 3.2E-16 T 23-04-2016 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 Gene3D G3DSA:2.60.34.10 377 516 4.4E-58 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PANTHER PTHR19375:SF173 2 588 2.0E-266 T 23-04-2016 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 324 338 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 Gene3D G3DSA:3.30.420.40 183 220 3.1E-35 T 23-04-2016 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 Gene3D G3DSA:3.30.420.40 306 348 3.1E-35 T 23-04-2016 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 SUPERFAMILY SSF53067 1 179 6.85E-57 T 23-04-2016 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 Gene3D G3DSA:3.30.30.30 71 110 1.6E-11 T 23-04-2016 NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 SUPERFAMILY SSF100920 372 523 7.32E-51 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 Pfam PF00012 Hsp70 protein 4 587 3.0E-209 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PRINTS PR00301 70kDa heat shock protein signature 31 43 4.8E-68 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PRINTS PR00301 70kDa heat shock protein signature 321 337 4.8E-68 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PRINTS PR00301 70kDa heat shock protein signature 455 471 4.8E-68 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PRINTS PR00301 70kDa heat shock protein signature 193 203 4.8E-68 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PRINTS PR00301 70kDa heat shock protein signature 134 154 4.8E-68 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PRINTS PR00301 70kDa heat shock protein signature 3 16 4.8E-68 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PRINTS PR00301 70kDa heat shock protein signature 352 372 4.8E-68 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PRINTS PR00301 70kDa heat shock protein signature 375 394 4.8E-68 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PRINTS PR00301 70kDa heat shock protein signature 53 61 4.8E-68 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS18360 f8b3db5ffa642232776767f3c9ee3ab7 606 PANTHER PTHR19375 2 588 2.0E-266 T 23-04-2016 NIDE_RS05715 518f11b73d579256c4768fd596f173d3 305 Pfam PF01435 Peptidase family M48 94 304 2.5E-38 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 NIDE_RS05715 518f11b73d579256c4768fd596f173d3 305 Gene3D G3DSA:3.30.2010.10 82 168 2.4E-28 T 23-04-2016 NIDE_RS05715 518f11b73d579256c4768fd596f173d3 305 PANTHER PTHR10120 15 305 7.0E-71 T 23-04-2016 NIDE_RS05715 518f11b73d579256c4768fd596f173d3 305 PANTHER PTHR10120:SF19 15 305 7.0E-71 T 23-04-2016 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 PIRSF PIRSF001435 13 223 2.2E-52 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 Gene3D G3DSA:1.10.340.30 35 134 5.3E-37 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 SMART SM00478 50 197 2.0E-59 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 46 180 9.2E-27 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 PANTHER PTHR10359 16 223 7.8E-75 T 23-04-2016 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 PANTHER PTHR10359:SF18 16 223 7.8E-75 T 23-04-2016 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 Hamap MF_00942 Endonuclease III [nth]. 12 221 36.948 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 TIGRFAM TIGR01083 nth: endonuclease III 17 206 4.6E-76 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 Pfam PF00633 Helix-hairpin-helix motif 112 138 5.2E-8 T 23-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 SUPERFAMILY SSF48150 17 220 6.75E-69 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 NIDE_RS11275 b1f339c5260448de5d3a552eb4a5db51 223 Gene3D G3DSA:1.10.1670.10 135 220 1.7E-32 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal NIDE_RS16710 9549dafe651ee8f6c1b5a9b629f0cad0 193 Gene3D G3DSA:3.40.50.300 29 152 3.2E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16710 9549dafe651ee8f6c1b5a9b629f0cad0 193 SUPERFAMILY SSF52540 52 153 1.06E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16710 9549dafe651ee8f6c1b5a9b629f0cad0 193 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 52 152 3.5E-15 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS13735 4b44ecad7eae50cc90d7c8cfcee2a459 230 Gene3D G3DSA:3.90.550.10 1 223 1.8E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13735 4b44ecad7eae50cc90d7c8cfcee2a459 230 SUPERFAMILY SSF53448 1 223 9.15E-49 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13735 4b44ecad7eae50cc90d7c8cfcee2a459 230 Pfam PF02348 Cytidylyltransferase 5 147 2.0E-21 T 23-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 NIDE_RS13735 4b44ecad7eae50cc90d7c8cfcee2a459 230 PANTHER PTHR21485 1 220 1.1E-47 T 23-04-2016 NIDE_RS13735 4b44ecad7eae50cc90d7c8cfcee2a459 230 PANTHER PTHR21485:SF20 1 220 1.1E-47 T 23-04-2016 NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 PANTHER PTHR21343:SF6 4 236 1.2E-163 T 23-04-2016 NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 PANTHER PTHR21343:SF6 253 463 1.2E-163 T 23-04-2016 NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 SUPERFAMILY SSF52540 1 197 3.75E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 250 440 1.6E-38 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 Gene3D G3DSA:3.40.50.880 249 455 4.7E-26 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 5 452 8.2E-142 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 171 2.9E-24 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 Gene3D G3DSA:3.40.50.300 3 196 1.5E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 3 442 43.479 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 SUPERFAMILY SSF52317 246 449 6.88E-33 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 PANTHER PTHR21343 4 236 1.2E-163 T 23-04-2016 NIDE_RS12245 8f8c5d5f6dad779621bdbc80d8044696 465 PANTHER PTHR21343 253 463 1.2E-163 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 599 3.2E-303 T 23-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.3E-76 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PRINTS PR00301 70kDa heat shock protein signature 464 480 1.3E-76 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PRINTS PR00301 70kDa heat shock protein signature 360 380 1.3E-76 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PRINTS PR00301 70kDa heat shock protein signature 197 207 1.3E-76 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PRINTS PR00301 70kDa heat shock protein signature 383 402 1.3E-76 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.3E-76 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PRINTS PR00301 70kDa heat shock protein signature 329 345 1.3E-76 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.3E-76 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.3E-76 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 Pfam PF00012 Hsp70 protein 4 599 2.3E-273 T 23-04-2016 IPR013126 Heat shock protein 70 family NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 SUPERFAMILY SSF53067 185 377 2.4E-67 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PANTHER PTHR19375 2 642 0.0 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 Gene3D G3DSA:1.20.1270.10 527 598 1.6E-28 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 Gene3D G3DSA:3.30.420.40 119 191 2.6E-65 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 Gene3D G3DSA:3.30.420.40 4 52 2.6E-65 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 638 37.878 T 23-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 Gene3D G3DSA:3.30.420.40 314 356 8.7E-37 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 Gene3D G3DSA:3.30.420.40 192 224 8.7E-37 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 SUPERFAMILY SSF100920 379 535 7.46E-61 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 SUPERFAMILY SSF53067 4 184 1.81E-68 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 Gene3D G3DSA:3.30.30.30 53 107 3.0E-26 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 Gene3D G3DSA:3.90.640.10 225 310 1.3E-31 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 SUPERFAMILY SSF100934 502 609 7.85E-22 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 PANTHER PTHR19375:SF173 2 642 0.0 T 23-04-2016 NIDE_RS07930 7d1b43c6475608c5c164b76ad1c7814e 643 Gene3D G3DSA:2.60.34.10 385 526 4.5E-71 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 SUPERFAMILY SSF63829 384 415 2.75E-33 T 23-04-2016 NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 SUPERFAMILY SSF63829 250 350 2.75E-33 T 23-04-2016 NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 SUPERFAMILY SSF63829 31 189 2.75E-33 T 23-04-2016 NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 SMART SM00135 28 70 0.05 T 23-04-2016 IPR000033 LDLR class B repeat NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 SMART SM00135 142 183 50.0 T 23-04-2016 IPR000033 LDLR class B repeat NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 Gene3D G3DSA:2.120.10.30 249 415 3.2E-57 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 Gene3D G3DSA:2.120.10.30 12 190 3.2E-57 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 Pfam PF01436 NHL repeat 251 276 7.4E-5 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 Pfam PF01436 NHL repeat 93 119 3.9E-4 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 PANTHER PTHR24103 251 345 2.5E-17 T 23-04-2016 NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 PANTHER PTHR24103 37 197 2.5E-17 T 23-04-2016 NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 PANTHER PTHR24103 387 415 2.5E-17 T 23-04-2016 NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 PANTHER PTHR24103:SF378 251 345 2.5E-17 T 23-04-2016 NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 PANTHER PTHR24103:SF378 37 197 2.5E-17 T 23-04-2016 NIDE_RS14950 134506d347e118b0ba82d251287f7883 417 PANTHER PTHR24103:SF378 387 415 2.5E-17 T 23-04-2016 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 PIRSF PIRSF005719 1 1227 3.9E-258 T 23-04-2016 IPR024704 Structural maintenance of chromosomes protein NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 Gene3D G3DSA:3.40.50.300 1075 1223 6.3E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 Gene3D G3DSA:3.40.50.300 2 172 6.3E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 Gene3D G3DSA:3.40.50.300 1013 1014 6.3E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 PANTHER PTHR18937 2 397 2.7E-217 T 23-04-2016 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 PANTHER PTHR18937 417 685 2.7E-217 T 23-04-2016 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1223 21.022 T 23-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 PANTHER PTHR18937:SF261 2 397 2.7E-217 T 23-04-2016 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 PANTHER PTHR18937:SF261 711 1221 2.7E-217 T 23-04-2016 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 PANTHER PTHR18937:SF261 417 685 2.7E-217 T 23-04-2016 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 SUPERFAMILY SSF52540 1107 1214 6.51E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 SUPERFAMILY SSF52540 2 219 6.51E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 SUPERFAMILY SSF75553 494 704 9.15E-26 T 23-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 SMART SM00968 530 654 3.8E-11 T 23-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 Pfam PF06470 SMC proteins Flexible Hinge Domain 531 653 1.0E-13 T 23-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1221 1.1E-276 T 23-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 PANTHER PTHR18937 711 1221 2.7E-217 T 23-04-2016 NIDE_RS03955 ba717393970365652e23df7788b1356f 1227 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 1214 4.9E-63 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal NIDE_RS06805 06b409ab354c668003f7abd64c292d8c 431 SUPERFAMILY SSF52540 4 211 1.29E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06805 06b409ab354c668003f7abd64c292d8c 431 SMART SM00487 26 224 1.9E-62 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS06805 06b409ab354c668003f7abd64c292d8c 431 PANTHER PTHR24031 7 370 2.8E-169 T 23-04-2016 NIDE_RS06805 06b409ab354c668003f7abd64c292d8c 431 SUPERFAMILY SSF52540 152 367 1.26E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06805 06b409ab354c668003f7abd64c292d8c 431 Pfam PF00270 DEAD/DEAH box helicase 31 197 9.2E-51 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NIDE_RS06805 06b409ab354c668003f7abd64c292d8c 431 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site NIDE_RS06805 06b409ab354c668003f7abd64c292d8c 431 Gene3D G3DSA:3.40.50.300 215 370 4.9E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06805 06b409ab354c668003f7abd64c292d8c 431 SMART SM00490 259 340 8.7E-30 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS06805 06b409ab354c668003f7abd64c292d8c 431 Pfam PF00271 Helicase conserved C-terminal domain 237 339 1.0E-26 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS06805 06b409ab354c668003f7abd64c292d8c 431 Gene3D G3DSA:3.40.50.300 5 214 3.0E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 SUPERFAMILY SSF51735 236 266 2.87E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 SUPERFAMILY SSF51735 1 126 2.87E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 128 264 1.3E-44 T 23-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 150 167 - T 23-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 PIRSF PIRSF000161 1 267 7.0E-85 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 Gene3D G3DSA:3.40.50.720 1 163 4.1E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 265 34.595 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 264 1.1E-95 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 SUPERFAMILY SSF55347 127 236 3.49E-35 T 23-04-2016 NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 PANTHER PTHR20836 1 266 4.7E-95 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02245 6b0df37f37f8f46ac3c7af7e6502ab73 267 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 2 125 7.1E-37 T 23-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 Gene3D G3DSA:1.20.1180.10 193 258 3.6E-20 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 130 158 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 175 257 1.3E-23 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 PIRSF PIRSF000456 1 266 4.7E-103 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 3 257 3.3E-100 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 PANTHER PTHR23416:SF8 3 250 9.3E-111 T 23-04-2016 NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 2 34 2.8E-5 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 104 132 6.1E-4 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 Gene3D G3DSA:2.160.10.10 3 184 5.5E-43 T 23-04-2016 NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 PANTHER PTHR23416 3 250 9.3E-111 T 23-04-2016 NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 258 42.304 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 NIDE_RS13925 e0abea8a3a28c3a943da597a06ce8285 269 SUPERFAMILY SSF51161 2 258 7.56E-71 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS09645 9508b5c469b5eaab1c383ebe211cef39 450 SUPERFAMILY SSF52540 77 413 1.39E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09645 9508b5c469b5eaab1c383ebe211cef39 450 Gene3D G3DSA:3.30.450.90 93 190 3.2E-35 T 23-04-2016 NIDE_RS09645 9508b5c469b5eaab1c383ebe211cef39 450 PANTHER PTHR30258 35 435 3.8E-127 T 23-04-2016 NIDE_RS09645 9508b5c469b5eaab1c383ebe211cef39 450 PANTHER PTHR30258:SF3 35 435 3.8E-127 T 23-04-2016 NIDE_RS09645 9508b5c469b5eaab1c383ebe211cef39 450 Gene3D G3DSA:3.40.50.300 195 420 3.3E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09645 9508b5c469b5eaab1c383ebe211cef39 450 Pfam PF00437 Type II/IV secretion system protein 96 372 1.1E-85 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS19635 98d9221b22bc84a7bacb23c859ee55f1 115 Pfam PF05635 23S rRNA-intervening sequence protein 5 109 3.1E-37 T 23-04-2016 IPR012657 23S rRNA-intervening sequence protein NIDE_RS19635 98d9221b22bc84a7bacb23c859ee55f1 115 SUPERFAMILY SSF158446 2 114 1.96E-37 T 23-04-2016 NIDE_RS19635 98d9221b22bc84a7bacb23c859ee55f1 115 Gene3D G3DSA:1.20.1440.60 1 115 3.2E-35 T 23-04-2016 IPR012657 23S rRNA-intervening sequence protein NIDE_RS19635 98d9221b22bc84a7bacb23c859ee55f1 115 TIGRFAM TIGR02436 TIGR02436: four helix bundle protein 9 115 3.0E-36 T 23-04-2016 IPR012657 23S rRNA-intervening sequence protein NIDE_RS19635 98d9221b22bc84a7bacb23c859ee55f1 115 PANTHER PTHR38471 1 115 1.4E-32 T 23-04-2016 NIDE_RS19635 98d9221b22bc84a7bacb23c859ee55f1 115 PANTHER PTHR38471:SF2 1 115 1.4E-32 T 23-04-2016 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 Pfam PF02954 Bacterial regulatory protein, Fis family 418 447 1.2E-6 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 Gene3D G3DSA:3.40.50.2300 2 128 6.3E-35 T 23-04-2016 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 229 244 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 PANTHER PTHR32071 1 451 5.8E-184 T 23-04-2016 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 356 365 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 Pfam PF00158 Sigma-54 interaction domain 143 308 4.0E-68 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 SUPERFAMILY SSF46689 356 451 2.51E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 167 180 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 Gene3D G3DSA:1.10.10.60 404 451 3.4E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 SUPERFAMILY SSF52172 3 188 8.4E-43 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 SMART SM00382 163 317 1.4E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 Pfam PF00072 Response regulator receiver domain 5 115 2.6E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 Gene3D G3DSA:3.40.50.300 141 315 1.1E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 SUPERFAMILY SSF52540 143 384 2.23E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 418 435 3.2E-5 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 435 455 3.2E-5 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 Gene3D G3DSA:1.10.8.60 316 387 6.2E-24 T 23-04-2016 NIDE_RS15490 fa7cca013e23215de6646883015ffd93 458 SMART SM00448 3 116 1.5E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS00340 8e1fc5714270127527ff2ffef04d9577 462 SMART SM00857 16 169 2.6E-61 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS00340 8e1fc5714270127527ff2ffef04d9577 462 SUPERFAMILY SSF53041 15 169 1.24E-38 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS00340 8e1fc5714270127527ff2ffef04d9577 462 Gene3D G3DSA:3.40.50.1390 15 150 6.0E-36 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS00340 8e1fc5714270127527ff2ffef04d9577 462 Pfam PF07508 Recombinase 190 285 1.5E-10 T 23-04-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 NIDE_RS00340 8e1fc5714270127527ff2ffef04d9577 462 PANTHER PTHR30461 1 332 7.4E-51 T 23-04-2016 NIDE_RS00340 8e1fc5714270127527ff2ffef04d9577 462 Pfam PF00239 Resolvase, N terminal domain 17 168 6.5E-41 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS00340 8e1fc5714270127527ff2ffef04d9577 462 PANTHER PTHR30461:SF3 1 332 7.4E-51 T 23-04-2016 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 SUPERFAMILY SSF48264 15 453 1.44E-115 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 Gene3D G3DSA:1.10.630.10 14 454 8.7E-126 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00385 P450 superfamily signature 402 413 2.1E-12 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00385 P450 superfamily signature 393 402 2.1E-12 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00385 P450 superfamily signature 319 330 2.1E-12 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00385 P450 superfamily signature 267 284 2.1E-12 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 395 404 - T 23-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00463 E-class P450 group I signature 358 382 9.6E-27 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00463 E-class P450 group I signature 39 58 9.6E-27 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00463 E-class P450 group I signature 318 336 9.6E-27 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00463 E-class P450 group I signature 392 402 9.6E-27 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00463 E-class P450 group I signature 256 273 9.6E-27 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00463 E-class P450 group I signature 402 425 9.6E-27 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PRINTS PR00463 E-class P450 group I signature 276 302 9.6E-27 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PANTHER PTHR24291 15 459 1.6E-122 T 23-04-2016 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 Pfam PF00067 Cytochrome P450 18 438 8.3E-97 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 NIDE_RS00845 5e1e1b3f8053ebcb0f68c4c538eb8ed8 460 PANTHER PTHR24291:SF46 15 459 1.6E-122 T 23-04-2016 NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 Pfam PF08447 PAS fold 160 247 2.4E-13 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 SUPERFAMILY SSF55073 269 439 2.12E-50 T 23-04-2016 IPR029787 Nucleotide cyclase NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 PANTHER PTHR10799:SF774 223 547 1.8E-96 T 23-04-2016 NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 Gene3D G3DSA:3.20.20.450 450 699 6.9E-100 T 23-04-2016 IPR001633 EAL domain NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 Pfam PF00072 Response regulator receiver domain 8 119 4.9E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 SUPERFAMILY SSF141868 452 699 2.62E-91 T 23-04-2016 IPR001633 EAL domain NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 Gene3D G3DSA:3.30.70.270 265 443 1.0E-59 T 23-04-2016 NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 SMART SM00448 6 119 1.8E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 SMART SM00267 253 437 1.4E-68 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 156 259 9.5E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 262 435 3.2E-41 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 Pfam PF00990 Diguanylate cyclase, GGDEF domain 264 433 3.7E-49 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 PANTHER PTHR10799 223 547 1.8E-96 T 23-04-2016 NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 Gene3D G3DSA:3.40.50.2300 4 135 6.0E-37 T 23-04-2016 NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 SUPERFAMILY SSF55785 147 256 7.25E-19 T 23-04-2016 IPR000014 PAS domain NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 Pfam PF00563 EAL domain 453 688 4.8E-73 T 23-04-2016 IPR001633 EAL domain NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 SUPERFAMILY SSF52172 5 143 1.99E-37 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 Gene3D G3DSA:3.30.450.20 136 251 1.0E-21 T 23-04-2016 NIDE_RS11565 cc19e3aacf4edb4ea440ca4f5a38c1e3 708 SMART SM00052 447 693 1.9E-122 T 23-04-2016 IPR001633 EAL domain NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 Pfam PF13185 GAF domain 567 708 2.6E-12 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 Gene3D G3DSA:1.10.287.130 724 793 1.2E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 PANTHER PTHR24423:SF445 83 90 1.1E-73 T 23-04-2016 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 PANTHER PTHR24423:SF445 715 961 1.1E-73 T 23-04-2016 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 Pfam PF00512 His Kinase A (phospho-acceptor) domain 732 793 2.3E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 SMART SM00387 839 957 6.0E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 SUPERFAMILY SSF55874 787 955 5.63E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 SUPERFAMILY SSF55781 548 725 1.42E-25 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 PANTHER PTHR24423 83 90 1.1E-73 T 23-04-2016 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 PANTHER PTHR24423 715 961 1.1E-73 T 23-04-2016 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 SUPERFAMILY SSF47384 721 794 4.51E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 PRINTS PR00344 Bacterial sensor protein C-terminal signature 883 897 4.0E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 PRINTS PR00344 Bacterial sensor protein C-terminal signature 917 935 4.0E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 PRINTS PR00344 Bacterial sensor protein C-terminal signature 941 954 4.0E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 PRINTS PR00344 Bacterial sensor protein C-terminal signature 901 911 4.0E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 SMART SM00065 567 717 8.6E-12 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 Gene3D G3DSA:3.30.450.40 548 716 5.8E-23 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 Gene3D G3DSA:3.30.565.10 803 955 1.5E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 840 955 3.2E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 SMART SM00388 731 797 6.9E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 Pfam PF16927 N-terminal 7TM region of histidine kinase 10 222 1.2E-8 T 23-04-2016 IPR031621 Histidine kinase, N-terminal 7TM region NIDE_RS04415 a46e33581f05b36086b4bc78598d82bd 1002 Pfam PF16927 N-terminal 7TM region of histidine kinase 261 474 2.2E-12 T 23-04-2016 IPR031621 Histidine kinase, N-terminal 7TM region NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 23-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 Gene3D G3DSA:3.30.160.40 221 306 6.7E-29 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 295 3.1E-21 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 PANTHER PTHR11557:SF0 1 307 7.4E-150 T 23-04-2016 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 SUPERFAMILY SSF54782 221 308 3.14E-27 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 Gene3D G3DSA:3.40.190.10 3 110 1.1E-47 T 23-04-2016 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 SUPERFAMILY SSF53850 5 217 1.91E-81 T 23-04-2016 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 Gene3D G3DSA:3.40.190.10 111 199 1.1E-38 T 23-04-2016 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 2.2E-50 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 2.2E-50 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 2.2E-50 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 2.2E-50 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 2.2E-50 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 1.9E-112 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 PANTHER PTHR11557 1 307 7.4E-150 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 PIRSF PIRSF001438 1 310 4.0E-122 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 7 213 1.5E-77 T 23-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS12590 29174a8415a3ff3c53fc837e827138d5 310 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 39.483 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PANTHER PTHR11405 2 168 1.9E-219 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PANTHER PTHR11405 336 390 1.9E-219 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PANTHER PTHR11405 192 319 1.9E-219 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 Pfam PF00117 Glutamine amidotransferase class-I 199 387 5.5E-41 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 SMART SM01097 2 132 3.9E-90 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00097 Anthranilate synthase component II signature 364 377 2.6E-7 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00097 Anthranilate synthase component II signature 238 247 2.6E-7 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00097 Anthranilate synthase component II signature 265 276 2.6E-7 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 SUPERFAMILY SSF52021 2 148 4.05E-57 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 Gene3D G3DSA:3.50.30.20 2 146 3.6E-61 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 2 393 48.244 T 23-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 4 390 1.8E-145 T 23-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 3 131 7.5E-54 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 Gene3D G3DSA:3.40.50.880 153 391 5.7E-73 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00096 Glutamine amidotransferase superfamily signature 364 377 7.8E-13 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00096 Glutamine amidotransferase superfamily signature 238 247 7.8E-13 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00096 Glutamine amidotransferase superfamily signature 265 276 7.8E-13 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 SUPERFAMILY SSF52317 188 391 3.17E-54 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 282 299 1.2E-36 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 265 281 1.2E-36 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 307 318 1.2E-36 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 196 210 1.2E-36 T 23-04-2016 NIDE_RS11660 e4369c5e40dec170239d57bf26787f4d 394 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 235 249 1.2E-36 T 23-04-2016 NIDE_RS13220 e876fb59d34a9189bd53f2c952ed8d0a 377 Gene3D G3DSA:3.90.25.10 219 365 5.8E-28 T 23-04-2016 NIDE_RS13220 e876fb59d34a9189bd53f2c952ed8d0a 377 Gene3D G3DSA:3.40.50.720 31 218 2.7E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13220 e876fb59d34a9189bd53f2c952ed8d0a 377 PANTHER PTHR10366 37 363 1.1E-68 T 23-04-2016 NIDE_RS13220 e876fb59d34a9189bd53f2c952ed8d0a 377 SUPERFAMILY SSF51735 33 365 2.25E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13220 e876fb59d34a9189bd53f2c952ed8d0a 377 PANTHER PTHR10366:SF35 37 363 1.1E-68 T 23-04-2016 NIDE_RS13220 e876fb59d34a9189bd53f2c952ed8d0a 377 Pfam PF01370 NAD dependent epimerase/dehydratase family 38 288 5.8E-40 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 Pfam PF13646 HEAT repeats 190 248 1.4E-11 T 23-04-2016 NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 Pfam PF13646 HEAT repeats 68 140 9.0E-17 T 23-04-2016 NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 Pfam PF03130 PBS lyase HEAT-like repeat 141 162 0.064 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 SUPERFAMILY SSF48371 5 246 1.55E-39 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 PANTHER PTHR12697 7 253 6.3E-40 T 23-04-2016 NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 SMART SM00567 E-Z type HEAT repeats 140 168 1.1 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 SMART SM00567 E-Z type HEAT repeats 170 199 3.7E-9 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 SMART SM00567 E-Z type HEAT repeats 201 230 1.3E-6 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 SMART SM00567 E-Z type HEAT repeats 49 77 28.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 SMART SM00567 E-Z type HEAT repeats 19 47 140.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 SMART SM00567 E-Z type HEAT repeats 110 139 1.2E-5 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 SMART SM00567 E-Z type HEAT repeats 79 108 9.6E-6 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 Gene3D G3DSA:1.25.10.10 161 248 3.4E-23 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS18915 4279cbef793f9679cc6a48c74bebadcf 253 Gene3D G3DSA:1.25.10.10 7 160 2.1E-38 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS04810 245c0aaa0825ddd2e2d14774dcbbd736 216 SUPERFAMILY SSF53335 10 211 7.81E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS04810 245c0aaa0825ddd2e2d14774dcbbd736 216 Pfam PF01596 O-methyltransferase 21 209 1.7E-53 T 23-04-2016 IPR002935 O-methyltransferase, family 3 GO:0008171 NIDE_RS04810 245c0aaa0825ddd2e2d14774dcbbd736 216 PANTHER PTHR10509:SF14 7 211 1.8E-70 T 23-04-2016 NIDE_RS04810 245c0aaa0825ddd2e2d14774dcbbd736 216 PANTHER PTHR10509 7 211 1.8E-70 T 23-04-2016 NIDE_RS04810 245c0aaa0825ddd2e2d14774dcbbd736 216 Gene3D G3DSA:3.40.50.150 2 211 6.6E-69 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PANTHER PTHR22912 2 47 1.6E-23 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PANTHER PTHR22912 63 148 1.6E-23 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PANTHER PTHR22912 165 189 1.6E-23 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PANTHER PTHR22912 205 343 1.6E-23 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 Gene3D G3DSA:3.50.50.60 114 342 8.5E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 SUPERFAMILY SSF51905 16 347 1.51E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 2.0E-9 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 2.0E-9 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 109 127 2.0E-9 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 9.8E-10 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 9.8E-10 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 9.8E-10 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 16 38 9.8E-10 T 23-04-2016 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 Gene3D G3DSA:3.50.50.60 16 113 2.4E-22 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS00130 35bea63b278acebbf4885bb7369349d4 439 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 16 333 3.2E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS12310 cec46e9efeea9899a6136ca10e14061e 372 Gene3D G3DSA:3.40.640.10 17 242 7.9E-64 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS12310 cec46e9efeea9899a6136ca10e14061e 372 Gene3D G3DSA:3.90.1150.10 247 371 5.1E-25 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS12310 cec46e9efeea9899a6136ca10e14061e 372 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 18 367 4.0E-97 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS12310 cec46e9efeea9899a6136ca10e14061e 372 PIRSF PIRSF000390 2 372 1.3E-97 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS12310 cec46e9efeea9899a6136ca10e14061e 372 PANTHER PTHR30244 1 372 2.4E-79 T 23-04-2016 NIDE_RS12310 cec46e9efeea9899a6136ca10e14061e 372 SUPERFAMILY SSF53383 15 371 2.36E-90 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS12310 cec46e9efeea9899a6136ca10e14061e 372 PANTHER PTHR30244:SF9 1 372 2.4E-79 T 23-04-2016 NIDE_RS13720 87c42f200eda871edce341cd15513175 332 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 237 3.8E-53 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 NIDE_RS13720 87c42f200eda871edce341cd15513175 332 SUPERFAMILY SSF51735 3 311 5.64E-81 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13720 87c42f200eda871edce341cd15513175 332 PANTHER PTHR10366 4 332 2.9E-84 T 23-04-2016 NIDE_RS13720 87c42f200eda871edce341cd15513175 332 Gene3D G3DSA:3.40.50.720 5 189 8.6E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13720 87c42f200eda871edce341cd15513175 332 Gene3D G3DSA:3.90.25.10 190 312 4.5E-20 T 23-04-2016 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 Gene3D G3DSA:2.30.42.10 266 360 3.9E-28 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 Gene3D G3DSA:2.30.42.10 376 467 6.2E-20 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 Gene3D G3DSA:2.40.10.10 165 265 1.6E-44 T 23-04-2016 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 SUPERFAMILY SSF50494 54 261 1.22E-66 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 SUPERFAMILY SSF50156 246 354 3.42E-24 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 84 462 2.2E-130 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 Pfam PF13180 PDZ domain 265 355 3.9E-17 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 Pfam PF13180 PDZ domain 376 458 1.2E-8 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 PRINTS PR00834 HtrA/DegQ protease family signature 164 188 8.3E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 PRINTS PR00834 HtrA/DegQ protease family signature 123 143 8.3E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 PRINTS PR00834 HtrA/DegQ protease family signature 102 114 8.3E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 PRINTS PR00834 HtrA/DegQ protease family signature 221 238 8.3E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 PRINTS PR00834 HtrA/DegQ protease family signature 199 216 8.3E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 PRINTS PR00834 HtrA/DegQ protease family signature 304 316 8.3E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 Pfam PF13365 Trypsin-like peptidase domain 93 228 4.5E-35 T 23-04-2016 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 Gene3D G3DSA:2.40.10.10 88 164 1.0E-31 T 23-04-2016 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 SMART SM00228 374 456 1.7E-7 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 SMART SM00228 264 346 2.0E-10 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 PANTHER PTHR22939 55 358 1.0E-119 T 23-04-2016 NIDE_RS11760 12e3420f98dbd49bed35654446a7fced 468 SUPERFAMILY SSF50156 376 465 6.31E-16 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 PANTHER PTHR22683 189 532 1.2E-205 T 23-04-2016 NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 PANTHER PTHR22683:SF41 189 532 1.2E-205 T 23-04-2016 NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 Pfam PF09397 Ftsk gamma domain 716 775 1.9E-24 T 23-04-2016 IPR018541 FtsK gamma domain NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 SMART SM00843 714 779 2.5E-30 T 23-04-2016 IPR018541 FtsK gamma domain NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 1 170 6.3E-22 T 23-04-2016 IPR025199 DNA translocase FtsK, 4TM region NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 PANTHER PTHR22683 551 776 1.2E-205 T 23-04-2016 NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 PANTHER PTHR22683:SF41 551 776 1.2E-205 T 23-04-2016 NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 Pfam PF01580 FtsK/SpoIIIE family 381 618 4.7E-63 T 23-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 SUPERFAMILY SSF46785 715 777 7.56E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 Gene3D G3DSA:3.40.50.300 354 684 5.7E-85 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 SUPERFAMILY SSF52540 560 691 8.14E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02490 6a5e405748f865fb99e891c540f3d9b2 786 SUPERFAMILY SSF52540 354 516 8.14E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 Gene3D G3DSA:1.10.287.130 139 195 8.2E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 SMART SM00388 134 199 9.3E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 SMART SM00448 383 495 2.1E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 SMART SM00387 240 363 1.7E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 Pfam PF00072 Response regulator receiver domain 385 495 2.3E-15 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 240 360 2.3E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 PANTHER PTHR24423:SF458 16 499 2.8E-135 T 23-04-2016 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 Gene3D G3DSA:3.30.565.10 199 360 2.6E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 Gene3D G3DSA:3.40.50.2300 383 502 1.2E-26 T 23-04-2016 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 PANTHER PTHR24423 16 499 2.8E-135 T 23-04-2016 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 SUPERFAMILY SSF55785 33 128 4.4E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 SUPERFAMILY SSF47384 126 196 6.67E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 SUPERFAMILY SSF55874 189 366 1.83E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 306 3.7E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 320 3.7E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 360 3.7E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 341 3.7E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 Gene3D G3DSA:3.30.450.20 17 102 1.1E-4 T 23-04-2016 NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 SUPERFAMILY SSF52172 384 500 1.02E-24 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS17145 8784bf572d2e6af18b43f77037445c24 504 Gene3D G3DSA:3.30.450.20 103 138 9.6E-4 T 23-04-2016 NIDE_RS04900 99574696635da6595bddf315364bb3b2 266 PANTHER PTHR10617 7 263 1.4E-87 T 23-04-2016 NIDE_RS04900 99574696635da6595bddf315364bb3b2 266 Hamap MF_00304 Putative thiazole biosynthetic enzyme. 9 264 35.963 T 23-04-2016 IPR022828 Thiazole biosynthetic enzyme, putative MetaCyc: PWY-5532 NIDE_RS04900 99574696635da6595bddf315364bb3b2 266 Gene3D G3DSA:3.50.50.60 31 261 1.3E-61 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS04900 99574696635da6595bddf315364bb3b2 266 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 33 55 8.8E-5 T 23-04-2016 NIDE_RS04900 99574696635da6595bddf315364bb3b2 266 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 176 185 8.8E-5 T 23-04-2016 NIDE_RS04900 99574696635da6595bddf315364bb3b2 266 TIGRFAM TIGR00292 TIGR00292: thiazole biosynthesis enzyme 11 264 1.3E-72 T 23-04-2016 IPR002922 Thiazole biosynthetic enzyme Thi4 family NIDE_RS04900 99574696635da6595bddf315364bb3b2 266 SUPERFAMILY SSF51905 4 263 1.95E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS04900 99574696635da6595bddf315364bb3b2 266 PANTHER PTHR10617:SF115 7 263 1.4E-87 T 23-04-2016 NIDE_RS04900 99574696635da6595bddf315364bb3b2 266 Pfam PF01946 Thi4 family 15 245 3.0E-61 T 23-04-2016 NIDE_RS19750 7634a92163b6ae66dc56c30186eb15c9 301 PANTHER PTHR30373 30 301 2.1E-51 T 23-04-2016 NIDE_RS19750 7634a92163b6ae66dc56c30186eb15c9 301 Gene3D G3DSA:1.10.3720.10 182 253 1.7E-4 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS19750 7634a92163b6ae66dc56c30186eb15c9 301 PANTHER PTHR30373:SF2 30 301 2.1E-51 T 23-04-2016 NIDE_RS19750 7634a92163b6ae66dc56c30186eb15c9 301 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 38 159 1.6E-36 T 23-04-2016 IPR007621 TPM domain NIDE_RS04930 b4f0fad740fa7aeaf528f58b3765ce75 93 Pfam PF03992 Antibiotic biosynthesis monooxygenase 15 68 4.7E-6 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain NIDE_RS04930 b4f0fad740fa7aeaf528f58b3765ce75 93 Gene3D G3DSA:3.30.70.900 18 84 2.4E-6 T 23-04-2016 NIDE_RS04930 b4f0fad740fa7aeaf528f58b3765ce75 93 SUPERFAMILY SSF54909 14 82 4.13E-9 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS20425 06ae878ee7b094de5ec32d7ec6645b5b 469 SUPERFAMILY SSF56112 193 458 7.01E-75 T 23-04-2016 IPR011009 Protein kinase-like domain NIDE_RS20425 06ae878ee7b094de5ec32d7ec6645b5b 469 Pfam PF00069 Protein kinase domain 201 451 1.6E-55 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 NIDE_RS20425 06ae878ee7b094de5ec32d7ec6645b5b 469 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 207 230 - T 23-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 NIDE_RS20425 06ae878ee7b094de5ec32d7ec6645b5b 469 PANTHER PTHR24362 198 463 2.3E-98 T 23-04-2016 NIDE_RS20425 06ae878ee7b094de5ec32d7ec6645b5b 469 Gene3D G3DSA:3.30.200.20 197 271 6.9E-25 T 23-04-2016 NIDE_RS20425 06ae878ee7b094de5ec32d7ec6645b5b 469 PANTHER PTHR24362:SF160 198 463 2.3E-98 T 23-04-2016 NIDE_RS20425 06ae878ee7b094de5ec32d7ec6645b5b 469 Gene3D G3DSA:1.10.510.10 272 456 2.6E-51 T 23-04-2016 NIDE_RS20425 06ae878ee7b094de5ec32d7ec6645b5b 469 SMART SM00220 201 464 3.7E-61 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 NIDE_RS20425 06ae878ee7b094de5ec32d7ec6645b5b 469 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 324 336 - T 23-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 Gene3D G3DSA:3.40.50.10380 96 238 9.0E-55 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 SUPERFAMILY SSF51735 241 474 9.21E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 SUPERFAMILY SSF53223 90 239 4.24E-54 T 23-04-2016 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 Pfam PF00390 Malic enzyme, N-terminal domain 98 228 4.0E-28 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 SMART SM00919 241 464 3.1E-105 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 Pfam PF13291 ACT domain 11 82 4.0E-8 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 SUPERFAMILY SSF55021 12 81 3.05E-7 T 23-04-2016 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 PANTHER PTHR23406 1 473 1.9E-167 T 23-04-2016 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 Pfam PF03949 Malic enzyme, NAD binding domain 243 463 1.7E-18 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 SMART SM01274 96 229 2.5E-81 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 PANTHER PTHR23406:SF23 1 473 1.9E-167 T 23-04-2016 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 Gene3D G3DSA:3.30.70.260 11 82 3.4E-10 T 23-04-2016 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 PIRSF PIRSF000106 27 479 1.5E-82 T 23-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 NIDE_RS11190 94a8382b221a329b8d1a943f06d524dc 480 Gene3D G3DSA:3.40.50.720 239 463 4.1E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16990 cd689997dfe4f6ce956c10f368ae771f 307 SUPERFAMILY SSF51735 1 304 2.08E-96 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16990 cd689997dfe4f6ce956c10f368ae771f 307 Gene3D G3DSA:3.90.25.10 167 304 2.8E-33 T 23-04-2016 NIDE_RS16990 cd689997dfe4f6ce956c10f368ae771f 307 Gene3D G3DSA:3.40.50.720 1 166 2.4E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16990 cd689997dfe4f6ce956c10f368ae771f 307 PANTHER PTHR10366 2 304 1.8E-104 T 23-04-2016 NIDE_RS16990 cd689997dfe4f6ce956c10f368ae771f 307 PANTHER PTHR10366:SF466 2 304 1.8E-104 T 23-04-2016 NIDE_RS16990 cd689997dfe4f6ce956c10f368ae771f 307 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 298 2.0E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS06435 402dcec5d2441f2fb5b1d933ab97f189 237 ProSitePatterns PS01058 SAICAR synthetase signature 2. 176 184 - T 23-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 NIDE_RS06435 402dcec5d2441f2fb5b1d933ab97f189 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 7 237 30.977 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 NIDE_RS06435 402dcec5d2441f2fb5b1d933ab97f189 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 89 103 - T 23-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 NIDE_RS06435 402dcec5d2441f2fb5b1d933ab97f189 237 Gene3D G3DSA:3.30.470.20 97 222 9.9E-50 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS06435 402dcec5d2441f2fb5b1d933ab97f189 237 PANTHER PTHR11609 9 235 4.0E-113 T 23-04-2016 NIDE_RS06435 402dcec5d2441f2fb5b1d933ab97f189 237 Pfam PF01259 SAICAR synthetase 9 234 4.1E-64 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 NIDE_RS06435 402dcec5d2441f2fb5b1d933ab97f189 237 Gene3D G3DSA:3.30.200.20 9 96 1.7E-36 T 23-04-2016 NIDE_RS06435 402dcec5d2441f2fb5b1d933ab97f189 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 7 235 2.1E-70 T 23-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 NIDE_RS06435 402dcec5d2441f2fb5b1d933ab97f189 237 PANTHER PTHR11609:SF2 9 235 4.0E-113 T 23-04-2016 NIDE_RS06435 402dcec5d2441f2fb5b1d933ab97f189 237 SUPERFAMILY SSF56104 7 235 3.92E-79 T 23-04-2016 NIDE_RS04195 efbae8f0f0f06f7122fb5760853f4946 543 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 186 197 - T 23-04-2016 IPR033116 Serine proteases, trypsin family, serine active site NIDE_RS04195 efbae8f0f0f06f7122fb5760853f4946 543 Gene3D G3DSA:2.40.10.10 130 228 1.3E-11 T 23-04-2016 NIDE_RS04195 efbae8f0f0f06f7122fb5760853f4946 543 Gene3D G3DSA:2.40.10.10 64 129 5.4E-7 T 23-04-2016 NIDE_RS04195 efbae8f0f0f06f7122fb5760853f4946 543 Pfam PF13365 Trypsin-like peptidase domain 68 206 1.1E-14 T 23-04-2016 NIDE_RS04195 efbae8f0f0f06f7122fb5760853f4946 543 SUPERFAMILY SSF50494 47 228 4.56E-24 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS16490 885cadebb46361c5b3e3cc406375b73c 314 Pfam PF13410 Glutathione S-transferase, C-terminal domain 190 262 3.3E-10 T 23-04-2016 NIDE_RS16490 885cadebb46361c5b3e3cc406375b73c 314 Gene3D G3DSA:3.40.30.10 24 166 1.6E-15 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS16490 885cadebb46361c5b3e3cc406375b73c 314 Pfam PF13409 Glutathione S-transferase, N-terminal domain 50 145 1.9E-14 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 NIDE_RS16490 885cadebb46361c5b3e3cc406375b73c 314 PANTHER PTHR32419:SF6 1 314 5.2E-158 T 23-04-2016 NIDE_RS16490 885cadebb46361c5b3e3cc406375b73c 314 SUPERFAMILY SSF47616 163 310 9.88E-31 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like NIDE_RS16490 885cadebb46361c5b3e3cc406375b73c 314 Gene3D G3DSA:1.20.1050.10 167 275 2.0E-18 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like NIDE_RS16490 885cadebb46361c5b3e3cc406375b73c 314 SUPERFAMILY SSF52833 25 149 6.71E-11 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS16490 885cadebb46361c5b3e3cc406375b73c 314 PIRSF PIRSF015753 2 311 5.2E-120 T 23-04-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 NIDE_RS16490 885cadebb46361c5b3e3cc406375b73c 314 PANTHER PTHR32419 1 314 5.2E-158 T 23-04-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 Gene3D G3DSA:2.160.20.10 578 628 2.7E-14 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 Gene3D G3DSA:2.160.20.10 457 537 2.7E-14 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 Gene3D G3DSA:2.160.20.10 696 855 2.7E-14 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 Pfam PF13229 Right handed beta helix region 578 735 1.3E-4 T 23-04-2016 NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 Pfam PF13229 Right handed beta helix region 768 894 1.7E-7 T 23-04-2016 NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 SMART SM00710 834 855 5700.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 SMART SM00710 671 701 9600.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 SMART SM00710 702 726 660.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 SMART SM00710 639 660 2700.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 SMART SM00710 764 785 980.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 SMART SM00710 585 606 670.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 SMART SM00710 812 833 360.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 SUPERFAMILY SSF51126 457 543 8.27E-17 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS20605 e0d1580f89c6e52bcb8594e99254ec3e 1105 SUPERFAMILY SSF51126 575 860 8.27E-17 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS20655 58e5a79e6c365a64e8dbb19523c20870 375 PANTHER PTHR30570:SF5 127 358 8.5E-53 T 23-04-2016 NIDE_RS20655 58e5a79e6c365a64e8dbb19523c20870 375 PANTHER PTHR30570:SF5 60 107 8.5E-53 T 23-04-2016 NIDE_RS20655 58e5a79e6c365a64e8dbb19523c20870 375 Gene3D G3DSA:3.40.190.10 163 300 1.7E-32 T 23-04-2016 NIDE_RS20655 58e5a79e6c365a64e8dbb19523c20870 375 PANTHER PTHR30570 127 358 8.5E-53 T 23-04-2016 NIDE_RS20655 58e5a79e6c365a64e8dbb19523c20870 375 PANTHER PTHR30570 60 107 8.5E-53 T 23-04-2016 NIDE_RS20655 58e5a79e6c365a64e8dbb19523c20870 375 SUPERFAMILY SSF53850 60 362 8.47E-53 T 23-04-2016 NIDE_RS20655 58e5a79e6c365a64e8dbb19523c20870 375 Gene3D G3DSA:3.40.190.10 301 356 2.7E-4 T 23-04-2016 NIDE_RS20655 58e5a79e6c365a64e8dbb19523c20870 375 Pfam PF12849 PBP superfamily domain 57 334 2.3E-26 T 23-04-2016 IPR024370 PBP domain NIDE_RS02270 27196e45314714eb401e98b775a1fd35 359 SUPERFAMILY SSF53955 142 279 6.0E-30 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS02270 27196e45314714eb401e98b775a1fd35 359 PANTHER PTHR21666:SF182 97 328 5.0E-45 T 23-04-2016 NIDE_RS02270 27196e45314714eb401e98b775a1fd35 359 Gene3D G3DSA:1.10.530.10 143 280 3.6E-35 T 23-04-2016 NIDE_RS02270 27196e45314714eb401e98b775a1fd35 359 Pfam PF01464 Transglycosylase SLT domain 146 252 2.2E-17 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 NIDE_RS02270 27196e45314714eb401e98b775a1fd35 359 PANTHER PTHR21666 97 328 5.0E-45 T 23-04-2016 NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 SMART SM00382 505 697 7.4E-20 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 21 716 0.0 T 23-04-2016 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 Gene3D G3DSA:3.40.50.300 479 710 9.1E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 Pfam PF00664 ABC transporter transmembrane region 166 433 2.4E-54 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 SUPERFAMILY SSF90123 151 463 2.35E-68 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 ProSitePatterns PS00211 ABC transporters family signature. 617 631 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 Pfam PF00005 ABC transporter 496 645 2.4E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 Gene3D G3DSA:1.20.1560.10 151 462 8.9E-83 T 23-04-2016 NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 Gene3D G3DSA:3.90.70.10 16 137 1.8E-28 T 23-04-2016 NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 SUPERFAMILY SSF52540 470 715 4.1E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 PANTHER PTHR24221:SF246 133 722 0.0 T 23-04-2016 NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 Pfam PF03412 Peptidase C39 family 18 138 6.6E-19 T 23-04-2016 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 NIDE_RS15820 a6617bb3b67f95539b896abc3b343d65 722 PANTHER PTHR24221 133 722 0.0 T 23-04-2016 NIDE_RS07145 6ea506d8d65a66814d892c59174cf7c3 306 TIGRFAM TIGR03638 cas1_ECOLI: CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI 9 274 1.1E-115 T 23-04-2016 IPR019851 CRISPR-associated protein Cas1, ECOLI subtype NIDE_RS07145 6ea506d8d65a66814d892c59174cf7c3 306 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 16 293 10.152 T 23-04-2016 IPR002729 CRISPR-associated protein Cas1 NIDE_RS07145 6ea506d8d65a66814d892c59174cf7c3 306 Pfam PF01867 CRISPR associated protein Cas1 131 241 3.1E-9 T 23-04-2016 IPR002729 CRISPR-associated protein Cas1 NIDE_RS07145 6ea506d8d65a66814d892c59174cf7c3 306 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 134 258 4.3E-28 T 23-04-2016 IPR002729 CRISPR-associated protein Cas1 NIDE_RS09960 dc7e9129f70214a0f26ea9335d22a6f4 172 Pfam PF08281 Sigma-70, region 4 112 160 2.3E-13 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS09960 dc7e9129f70214a0f26ea9335d22a6f4 172 Gene3D G3DSA:1.10.10.10 105 169 5.5E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS09960 dc7e9129f70214a0f26ea9335d22a6f4 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 167 3.2E-26 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS09960 dc7e9129f70214a0f26ea9335d22a6f4 172 PANTHER PTHR30173 8 169 2.2E-44 T 23-04-2016 NIDE_RS09960 dc7e9129f70214a0f26ea9335d22a6f4 172 PANTHER PTHR30173:SF30 8 169 2.2E-44 T 23-04-2016 NIDE_RS09960 dc7e9129f70214a0f26ea9335d22a6f4 172 SUPERFAMILY SSF88946 9 96 7.85E-18 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS09960 dc7e9129f70214a0f26ea9335d22a6f4 172 SUPERFAMILY SSF88659 94 169 2.06E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS09960 dc7e9129f70214a0f26ea9335d22a6f4 172 Gene3D G3DSA:1.10.1740.10 9 98 2.9E-17 T 23-04-2016 NIDE_RS09960 dc7e9129f70214a0f26ea9335d22a6f4 172 Pfam PF04542 Sigma-70 region 2 12 77 4.8E-15 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS12905 6ca48035ba09bcd9e377a1e96d80b9ee 144 Pfam PF04134 Protein of unknown function, DUF393 19 128 1.4E-32 T 23-04-2016 IPR007263 Protein of unknown function DUF393 NIDE_RS12905 6ca48035ba09bcd9e377a1e96d80b9ee 144 PANTHER PTHR33639 18 144 1.1E-50 T 23-04-2016 NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 Pfam PF00905 Penicillin binding protein transpeptidase domain 418 665 1.8E-35 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 SUPERFAMILY SSF56601 354 754 5.09E-128 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 SUPERFAMILY SSF56601 304 326 5.09E-128 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 Pfam PF14814 Bifunctional transglycosylase second domain 56 134 1.2E-10 T 23-04-2016 IPR028166 Bifunctional transglycosylase second domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 PANTHER PTHR32282 151 749 1.8E-200 T 23-04-2016 NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 155 697 8.8E-171 T 23-04-2016 NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 PANTHER PTHR32282:SF5 151 749 1.8E-200 T 23-04-2016 NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 Pfam PF00912 Transglycosylase 151 322 5.4E-59 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 Gene3D G3DSA:3.30.2060.10 56 142 1.3E-8 T 23-04-2016 NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 Gene3D G3DSA:1.10.3810.10 151 323 1.2E-65 T 23-04-2016 NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 SUPERFAMILY SSF53955 151 346 1.74E-65 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS16440 539a939a393027b9be979b588d5f851b 764 Gene3D G3DSA:3.40.710.10 324 749 1.2E-128 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS20325 1db0a0b71428d2feb28fded265804082 237 Gene3D G3DSA:1.10.150.320 178 235 5.8E-6 T 23-04-2016 NIDE_RS20325 1db0a0b71428d2feb28fded265804082 237 Gene3D G3DSA:1.20.5.170 87 123 6.1E-5 T 23-04-2016 NIDE_RS20325 1db0a0b71428d2feb28fded265804082 237 SUPERFAMILY SSF81585 178 235 8.5E-8 T 23-04-2016 NIDE_RS11540 02db555a93d97bea7b6ca666ababed87 324 Pfam PF13183 4Fe-4S dicluster domain 148 223 7.9E-12 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS11540 02db555a93d97bea7b6ca666ababed87 324 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 233 5.8E-73 T 23-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 NIDE_RS11540 02db555a93d97bea7b6ca666ababed87 324 Gene3D G3DSA:3.10.20.30 1 105 2.7E-37 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS11540 02db555a93d97bea7b6ca666ababed87 324 PANTHER PTHR11921 1 250 3.8E-80 T 23-04-2016 NIDE_RS11540 02db555a93d97bea7b6ca666ababed87 324 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 209 220 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS11540 02db555a93d97bea7b6ca666ababed87 324 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 54 62 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 NIDE_RS11540 02db555a93d97bea7b6ca666ababed87 324 Gene3D G3DSA:1.10.1060.10 106 239 6.9E-30 T 23-04-2016 NIDE_RS11540 02db555a93d97bea7b6ca666ababed87 324 SUPERFAMILY SSF46548 106 239 1.26E-27 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 NIDE_RS11540 02db555a93d97bea7b6ca666ababed87 324 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 111 1.9E-35 T 23-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 NIDE_RS11540 02db555a93d97bea7b6ca666ababed87 324 SUPERFAMILY SSF54292 2 105 2.88E-29 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NIDE_RS11370 4a5181dde0325996389e31464fa300fe 101 Gene3D G3DSA:2.102.10.10 3 101 9.8E-34 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS11370 4a5181dde0325996389e31464fa300fe 101 PANTHER PTHR21496 1 101 8.2E-30 T 23-04-2016 NIDE_RS11370 4a5181dde0325996389e31464fa300fe 101 SUPERFAMILY SSF50022 2 101 1.11E-31 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS11370 4a5181dde0325996389e31464fa300fe 101 Pfam PF00355 Rieske [2Fe-2S] domain 5 84 2.9E-18 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 233 339 1.3E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 126 189 4.2E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 PANTHER PTHR24423:SF445 101 342 8.8E-59 T 23-04-2016 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 SUPERFAMILY SSF51735 6 101 2.3E-14 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 SUPERFAMILY SSF47384 122 187 7.06E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 270 284 1.7E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 288 298 1.7E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 301 319 1.7E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 338 1.7E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 SUPERFAMILY SSF55874 180 339 3.27E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 Gene3D G3DSA:1.10.287.130 126 186 7.5E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 PANTHER PTHR24423 101 342 8.8E-59 T 23-04-2016 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 SMART SM00387 232 341 5.3E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 SMART SM00388 125 190 3.4E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 Gene3D G3DSA:3.30.565.10 193 340 4.9E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20980 e0dc6c2f3d95abb2fa32b409f1809578 349 Gene3D G3DSA:3.40.50.720 6 103 6.0E-13 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS07720 a191c4a16188f3ee4be788e42f3875ee 71 Pfam PF04325 Protein of unknown function (DUF465) 18 66 1.6E-9 T 23-04-2016 IPR007420 Protein of unknown function DUF465 NIDE_RS18705 044c5bdedcaef1b3a27f899cbea9124a 257 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 9 92 6.0E-32 T 23-04-2016 IPR010627 Peptidase A24A, N-terminal KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- NIDE_RS18705 044c5bdedcaef1b3a27f899cbea9124a 257 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 111 128 4.4E-14 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- NIDE_RS18705 044c5bdedcaef1b3a27f899cbea9124a 257 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 179 190 4.4E-14 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- NIDE_RS18705 044c5bdedcaef1b3a27f899cbea9124a 257 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 168 178 4.4E-14 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- NIDE_RS18705 044c5bdedcaef1b3a27f899cbea9124a 257 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 191 206 4.4E-14 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- NIDE_RS18705 044c5bdedcaef1b3a27f899cbea9124a 257 Pfam PF01478 Type IV leader peptidase family 103 210 7.0E-20 T 23-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 NIDE_RS18705 044c5bdedcaef1b3a27f899cbea9124a 257 PANTHER PTHR30487 1 249 1.2E-87 T 23-04-2016 NIDE_RS18705 044c5bdedcaef1b3a27f899cbea9124a 257 PANTHER PTHR30487:SF0 1 249 1.2E-87 T 23-04-2016 NIDE_RS00110 b4310af096b6f5446a2ab59bb6740210 514 Gene3D G3DSA:3.30.43.10 7 113 2.0E-33 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 NIDE_RS00110 b4310af096b6f5446a2ab59bb6740210 514 Pfam PF01565 FAD binding domain 57 197 2.7E-27 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 NIDE_RS00110 b4310af096b6f5446a2ab59bb6740210 514 SUPERFAMILY SSF55103 243 513 2.83E-48 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 NIDE_RS00110 b4310af096b6f5446a2ab59bb6740210 514 Gene3D G3DSA:3.30.465.10 114 241 2.6E-37 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 NIDE_RS00110 b4310af096b6f5446a2ab59bb6740210 514 SUPERFAMILY SSF56176 10 241 2.2E-58 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 NIDE_RS00110 b4310af096b6f5446a2ab59bb6740210 514 PANTHER PTHR11748 1 510 2.1E-85 T 23-04-2016 NIDE_RS00110 b4310af096b6f5446a2ab59bb6740210 514 Gene3D G3DSA:3.40.462.10 244 473 4.3E-89 T 23-04-2016 IPR016170 Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain KEGG: 00908+1.5.99.12 NIDE_RS00110 b4310af096b6f5446a2ab59bb6740210 514 PANTHER PTHR11748:SF92 1 510 2.1E-85 T 23-04-2016 NIDE_RS00110 b4310af096b6f5446a2ab59bb6740210 514 Gene3D G3DSA:1.10.45.10 474 513 2.4E-19 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 NIDE_RS00110 b4310af096b6f5446a2ab59bb6740210 514 Pfam PF02913 FAD linked oxidases, C-terminal domain 320 510 2.3E-12 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 NIDE_RS06520 58a942561969794544b9c56bd8a8625f 245 SUPERFAMILY SSF50998 61 205 1.44E-6 T 23-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily NIDE_RS06520 58a942561969794544b9c56bd8a8625f 245 Gene3D G3DSA:2.140.10.10 61 206 1.1E-6 T 23-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain NIDE_RS06235 b4e1eb4cb0f8fb86d3ec52e7b4dab912 288 PIRSF PIRSF005052 4 288 3.7E-102 T 23-04-2016 IPR005337 RapZ-like family GO:0005524 NIDE_RS06235 b4e1eb4cb0f8fb86d3ec52e7b4dab912 288 Gene3D G3DSA:3.40.50.300 6 159 4.8E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06235 b4e1eb4cb0f8fb86d3ec52e7b4dab912 288 SUPERFAMILY SSF52540 6 159 5.47E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06235 b4e1eb4cb0f8fb86d3ec52e7b4dab912 288 PANTHER PTHR30448 1 287 3.5E-129 T 23-04-2016 NIDE_RS06235 b4e1eb4cb0f8fb86d3ec52e7b4dab912 288 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 4 287 40.494 T 23-04-2016 IPR005337 RapZ-like family GO:0005524 NIDE_RS06235 b4e1eb4cb0f8fb86d3ec52e7b4dab912 288 Pfam PF03668 P-loop ATPase protein family 5 287 9.9E-93 T 23-04-2016 IPR005337 RapZ-like family GO:0005524 NIDE_RS06235 b4e1eb4cb0f8fb86d3ec52e7b4dab912 288 PANTHER PTHR30448:SF0 1 287 3.5E-129 T 23-04-2016 NIDE_RS02830 b32f8c07704c4a8aff6b4bf46ff5fddf 156 SUPERFAMILY SSF52833 3 155 9.28E-52 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS02830 b32f8c07704c4a8aff6b4bf46ff5fddf 156 PANTHER PTHR10371 4 155 1.8E-74 T 23-04-2016 NIDE_RS02830 b32f8c07704c4a8aff6b4bf46ff5fddf 156 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 10 153 5.1E-55 T 23-04-2016 NIDE_RS02830 b32f8c07704c4a8aff6b4bf46ff5fddf 156 PIRSF PIRSF000216 1 156 4.0E-65 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 NIDE_RS02830 b32f8c07704c4a8aff6b4bf46ff5fddf 156 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 9 153 2.6E-54 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 NIDE_RS02830 b32f8c07704c4a8aff6b4bf46ff5fddf 156 Gene3D G3DSA:3.40.30.10 74 151 2.8E-7 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS02830 b32f8c07704c4a8aff6b4bf46ff5fddf 156 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 111 129 - T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 NIDE_RS12810 5bf2f9bf955014bf8145a829c68b44eb 344 Pfam PF00891 O-methyltransferase 112 326 2.6E-51 T 23-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 NIDE_RS12810 5bf2f9bf955014bf8145a829c68b44eb 344 SUPERFAMILY SSF53335 101 341 1.69E-50 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12810 5bf2f9bf955014bf8145a829c68b44eb 344 Gene3D G3DSA:3.40.50.150 104 342 1.6E-70 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12810 5bf2f9bf955014bf8145a829c68b44eb 344 Gene3D G3DSA:1.10.10.10 12 103 5.0E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS12810 5bf2f9bf955014bf8145a829c68b44eb 344 PANTHER PTHR11746 1 342 2.4E-96 T 23-04-2016 NIDE_RS12810 5bf2f9bf955014bf8145a829c68b44eb 344 SUPERFAMILY SSF46785 14 96 9.89E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS12810 5bf2f9bf955014bf8145a829c68b44eb 344 PIRSF PIRSF005739 2 343 1.2E-53 T 23-04-2016 IPR016461 O-methyltransferase COMT-type GO:0008168 NIDE_RS12810 5bf2f9bf955014bf8145a829c68b44eb 344 Pfam PF16864 Dimerisation domain 18 91 7.5E-8 T 23-04-2016 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain NIDE_RS12810 5bf2f9bf955014bf8145a829c68b44eb 344 PANTHER PTHR11746:SF63 1 342 2.4E-96 T 23-04-2016 NIDE_RS11500 c1b202fd295427580de5c7e6c818f3c7 109 SUPERFAMILY SSF50118 2 107 1.01E-32 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor NIDE_RS11500 c1b202fd295427580de5c7e6c818f3c7 109 PIRSF PIRSF033490 3 108 9.0E-22 T 23-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 NIDE_RS11500 c1b202fd295427580de5c7e6c818f3c7 109 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 7 106 1.2E-25 T 23-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 NIDE_RS11500 c1b202fd295427580de5c7e6c818f3c7 109 Gene3D G3DSA:2.30.30.110 4 107 1.5E-32 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor NIDE_RS11500 c1b202fd295427580de5c7e6c818f3c7 109 PANTHER PTHR33988 1 108 1.6E-24 T 23-04-2016 NIDE_RS11500 c1b202fd295427580de5c7e6c818f3c7 109 PANTHER PTHR33988:SF2 1 108 1.6E-24 T 23-04-2016 NIDE_RS19670 3597e1495bf2637b4c49a1e05eb2d50a 397 SUPERFAMILY SSF100879 246 348 3.73E-19 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS19670 3597e1495bf2637b4c49a1e05eb2d50a 397 Gene3D G3DSA:1.10.150.20 170 239 1.1E-14 T 23-04-2016 NIDE_RS19670 3597e1495bf2637b4c49a1e05eb2d50a 397 Pfam PF00817 impB/mucB/samB family 13 157 1.4E-40 T 23-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS19670 3597e1495bf2637b4c49a1e05eb2d50a 397 Pfam PF11798 IMS family HHH motif 171 201 2.4E-6 T 23-04-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS19670 3597e1495bf2637b4c49a1e05eb2d50a 397 Hamap MF_01113 DNA polymerase IV [dinB]. 6 360 30.362 T 23-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS19670 3597e1495bf2637b4c49a1e05eb2d50a 397 SUPERFAMILY SSF56672 5 239 5.43E-64 T 23-04-2016 NIDE_RS19670 3597e1495bf2637b4c49a1e05eb2d50a 397 Gene3D G3DSA:3.30.1490.100 246 349 2.2E-19 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS19670 3597e1495bf2637b4c49a1e05eb2d50a 397 PANTHER PTHR11076 13 350 2.1E-85 T 23-04-2016 NIDE_RS19670 3597e1495bf2637b4c49a1e05eb2d50a 397 Pfam PF11799 impB/mucB/samB family C-terminal domain 241 349 1.8E-12 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS19670 3597e1495bf2637b4c49a1e05eb2d50a 397 Gene3D G3DSA:3.30.70.270 70 167 2.4E-21 T 23-04-2016 NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 9.6E-47 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 Gene3D G3DSA:3.40.50.1770 1 176 4.5E-60 T 23-04-2016 NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 SUPERFAMILY SSF51735 137 303 5.31E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 PANTHER PTHR10160 1 366 1.2E-188 T 23-04-2016 NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 Gene3D G3DSA:3.40.50.1770 200 357 7.0E-29 T 23-04-2016 NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 SMART SM01003 4 137 1.4E-72 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 365 7.0E-154 T 23-04-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 PIRSF PIRSF000183 1 367 1.3E-156 T 23-04-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 SMART SM01002 149 297 1.5E-81 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 7.5E-81 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 SUPERFAMILY SSF52283 305 360 4.85E-63 T 23-04-2016 NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 SUPERFAMILY SSF52283 1 137 4.85E-63 T 23-04-2016 NIDE_RS05755 5f2ec284be71748c9257d24da5f10b0e 367 Gene3D G3DSA:3.50.50.60 177 199 5.2E-6 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 PANTHER PTHR22773:SF67 215 361 1.3E-106 T 23-04-2016 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 PANTHER PTHR22773:SF67 1 199 1.3E-106 T 23-04-2016 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 PANTHER PTHR22773 215 361 1.3E-106 T 23-04-2016 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 PANTHER PTHR22773 1 199 1.3E-106 T 23-04-2016 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 Pfam PF00361 Proton-conducting membrane transporter 129 395 2.6E-47 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 252 278 4.7E-25 T 23-04-2016 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 78 103 4.7E-25 T 23-04-2016 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 230 251 4.7E-25 T 23-04-2016 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 319 331 4.7E-25 T 23-04-2016 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 106 126 4.7E-25 T 23-04-2016 NIDE_RS08125 298857346815cf48addfc06bd24b0c32 555 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 71 116 9.8E-13 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal NIDE_RS00185 5366054096ef7e7325ddc317d49f15a6 98 SUPERFAMILY SSF54909 1 72 4.54E-15 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS00185 5366054096ef7e7325ddc317d49f15a6 98 Gene3D G3DSA:3.30.70.900 2 95 6.0E-23 T 23-04-2016 NIDE_RS00185 5366054096ef7e7325ddc317d49f15a6 98 Pfam PF03992 Antibiotic biosynthesis monooxygenase 2 71 9.5E-9 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain NIDE_RS08400 978fbae653ed71e8757ff88c586e01a3 314 PANTHER PTHR33055 3 304 2.5E-44 T 23-04-2016 NIDE_RS08400 978fbae653ed71e8757ff88c586e01a3 314 Pfam PF02371 Transposase IS116/IS110/IS902 family 189 272 2.1E-21 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 NIDE_RS08400 978fbae653ed71e8757ff88c586e01a3 314 Pfam PF01548 Transposase 7 146 5.5E-24 T 23-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 NIDE_RS08400 978fbae653ed71e8757ff88c586e01a3 314 PANTHER PTHR33055:SF3 3 304 2.5E-44 T 23-04-2016 NIDE_RS10415 0f729273b6e4a7463a526f71bb2b975f 94 SUPERFAMILY SSF46955 10 59 3.3E-5 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS10415 0f729273b6e4a7463a526f71bb2b975f 94 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 11 58 2.8E-7 T 23-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 NIDE_RS10415 0f729273b6e4a7463a526f71bb2b975f 94 Gene3D G3DSA:1.10.10.10 15 63 6.3E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS10415 0f729273b6e4a7463a526f71bb2b975f 94 Pfam PF12728 Helix-turn-helix domain 11 60 1.3E-9 T 23-04-2016 NIDE_RS10450 43c98102ad701d430d40c8890cf4a921 149 PANTHER PTHR30435:SF2 1 149 1.0E-59 T 23-04-2016 NIDE_RS10450 43c98102ad701d430d40c8890cf4a921 149 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 99 146 5.3E-14 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain NIDE_RS10450 43c98102ad701d430d40c8890cf4a921 149 PANTHER PTHR30435 1 149 1.0E-59 T 23-04-2016 NIDE_RS10450 43c98102ad701d430d40c8890cf4a921 149 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 5 149 8.4E-52 T 23-04-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 NIDE_RS10450 43c98102ad701d430d40c8890cf4a921 149 Pfam PF00460 Flagella basal body rod protein 8 31 6.9E-7 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NIDE_RS14120 df69ec9a9fab748ce178d8b54e9eeaeb 235 Gene3D G3DSA:3.30.70.1100 137 233 8.4E-34 T 23-04-2016 NIDE_RS14120 df69ec9a9fab748ce178d8b54e9eeaeb 235 SUPERFAMILY SSF54909 4 233 4.29E-64 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS14120 df69ec9a9fab748ce178d8b54e9eeaeb 235 PANTHER PTHR36843:SF1 4 235 7.0E-34 T 23-04-2016 NIDE_RS14120 df69ec9a9fab748ce178d8b54e9eeaeb 235 PANTHER PTHR36843 4 235 7.0E-34 T 23-04-2016 NIDE_RS14120 df69ec9a9fab748ce178d8b54e9eeaeb 235 Gene3D G3DSA:3.30.70.1030 2 136 3.0E-35 T 23-04-2016 NIDE_RS14120 df69ec9a9fab748ce178d8b54e9eeaeb 235 Pfam PF06778 Chlorite dismutase 32 223 1.5E-58 T 23-04-2016 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase NIDE_RS04765 5f20c6392f85b635ebba6a2195883d06 143 PANTHER PTHR30625:SF6 16 132 1.9E-24 T 23-04-2016 NIDE_RS04765 5f20c6392f85b635ebba6a2195883d06 143 Pfam PF01618 MotA/TolQ/ExbB proton channel family 43 133 7.3E-26 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 NIDE_RS04765 5f20c6392f85b635ebba6a2195883d06 143 TIGRFAM TIGR02805 exbB2: tonB-system energizer ExbB 2 138 5.0E-45 T 23-04-2016 IPR014172 TonB-system energizer ExbB type-2 GO:0006810|GO:0016020 NIDE_RS04765 5f20c6392f85b635ebba6a2195883d06 143 PANTHER PTHR30625 16 132 1.9E-24 T 23-04-2016 NIDE_RS06125 73c87f487cea58fbf99a89dc178f0bc9 108 Pfam PF00467 KOW motif 10 41 1.1E-5 T 23-04-2016 IPR005824 KOW NIDE_RS06125 73c87f487cea58fbf99a89dc178f0bc9 108 SMART SM00739 7 34 1.7E-4 T 23-04-2016 IPR005824 KOW NIDE_RS06125 73c87f487cea58fbf99a89dc178f0bc9 108 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 5 107 2.0E-34 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06125 73c87f487cea58fbf99a89dc178f0bc9 108 Gene3D G3DSA:2.30.30.30 5 95 5.6E-26 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 NIDE_RS06125 73c87f487cea58fbf99a89dc178f0bc9 108 ProSitePatterns PS01108 Ribosomal protein L24 signature. 11 28 - T 23-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06125 73c87f487cea58fbf99a89dc178f0bc9 108 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 6 101 20.064 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06125 73c87f487cea58fbf99a89dc178f0bc9 108 PANTHER PTHR12903 7 107 1.3E-36 T 23-04-2016 NIDE_RS06125 73c87f487cea58fbf99a89dc178f0bc9 108 SUPERFAMILY SSF50104 5 106 2.11E-32 T 23-04-2016 IPR008991 Translation protein SH3-like domain NIDE_RS06125 73c87f487cea58fbf99a89dc178f0bc9 108 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 43 106 8.6E-25 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05035 a78406ab67816aec326b335be13a6674 308 Gene3D G3DSA:3.20.20.70 2 305 6.6E-77 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS05035 a78406ab67816aec326b335be13a6674 308 PANTHER PTHR11938 28 304 6.4E-83 T 23-04-2016 NIDE_RS05035 a78406ab67816aec326b335be13a6674 308 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 3 303 2.1E-61 T 23-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 NIDE_RS05035 a78406ab67816aec326b335be13a6674 308 PANTHER PTHR11938:SF106 28 304 6.4E-83 T 23-04-2016 NIDE_RS05035 a78406ab67816aec326b335be13a6674 308 PIRSF PIRSF000164 1 307 2.8E-68 T 23-04-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Reactome: REACT_1698 NIDE_RS05035 a78406ab67816aec326b335be13a6674 308 SUPERFAMILY SSF51395 1 305 5.5E-74 T 23-04-2016 NIDE_RS05035 a78406ab67816aec326b335be13a6674 308 Pfam PF01180 Dihydroorotate dehydrogenase 3 290 2.9E-71 T 23-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 NIDE_RS05035 a78406ab67816aec326b335be13a6674 308 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 3 305 29.594 T 23-04-2016 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 Gene3D G3DSA:1.10.287.130 530 601 2.5E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 PANTHER PTHR24423:SF471 396 751 7.0E-109 T 23-04-2016 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 Pfam PF00989 PAS fold 414 522 2.8E-12 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 SMART SM00387 645 751 4.0E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 PANTHER PTHR24423 396 751 7.0E-109 T 23-04-2016 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 SMART SM00091 412 478 8.1E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 SUPERFAMILY SSF55785 411 519 2.26E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 PRINTS PR00344 Bacterial sensor protein C-terminal signature 702 712 3.2E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 PRINTS PR00344 Bacterial sensor protein C-terminal signature 713 731 3.2E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 PRINTS PR00344 Bacterial sensor protein C-terminal signature 737 750 3.2E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 PRINTS PR00344 Bacterial sensor protein C-terminal signature 684 698 3.2E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 SMART SM00304 339 391 2.1E-15 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 SMART SM00388 534 605 5.5E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 412 532 2.5E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 SUPERFAMILY SSF158472 339 388 5.62E-12 T 23-04-2016 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 PANTHER PTHR24423:SF471 64 78 7.0E-109 T 23-04-2016 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 646 750 1.5E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 SUPERFAMILY SSF47384 530 605 5.3E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 SUPERFAMILY SSF55874 592 751 1.01E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 PIRSF PIRSF037532 7 751 3.4E-186 T 23-04-2016 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 PANTHER PTHR24423 64 78 7.0E-109 T 23-04-2016 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 Gene3D G3DSA:3.30.450.20 407 523 3.0E-14 T 23-04-2016 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 Pfam PF00672 HAMP domain 321 387 1.3E-15 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS05640 1447e6e88335d7fd60697abe56b5f25a 751 Gene3D G3DSA:3.30.565.10 610 751 9.4E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS21070 1da4f6a99252871865a5334b5a3ae7f5 224 PRINTS PR00605 Class IC cytochrome C signature 199 221 7.8E-5 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 NIDE_RS21070 1da4f6a99252871865a5334b5a3ae7f5 224 PRINTS PR00605 Class IC cytochrome C signature 161 172 7.8E-5 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 NIDE_RS21070 1da4f6a99252871865a5334b5a3ae7f5 224 SUPERFAMILY SSF46626 64 123 2.59E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS21070 1da4f6a99252871865a5334b5a3ae7f5 224 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 152 221 1.5E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS21070 1da4f6a99252871865a5334b5a3ae7f5 224 Gene3D G3DSA:1.10.760.10 150 222 1.9E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS21070 1da4f6a99252871865a5334b5a3ae7f5 224 SUPERFAMILY SSF46626 147 223 5.53E-21 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17600 d939c2151cade6b956430b22f00b890e 183 Gene3D G3DSA:3.10.450.50 49 175 1.6E-5 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS17600 d939c2151cade6b956430b22f00b890e 183 SUPERFAMILY SSF54427 46 163 9.44E-11 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS12880 737e9b062a8fb7beecff30f815afe324 191 SUPERFAMILY SSF88659 103 165 9.72E-13 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS12880 737e9b062a8fb7beecff30f815afe324 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 161 6.5E-23 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS12880 737e9b062a8fb7beecff30f815afe324 191 PANTHER PTHR30173 6 185 8.9E-47 T 23-04-2016 NIDE_RS12880 737e9b062a8fb7beecff30f815afe324 191 Pfam PF04542 Sigma-70 region 2 10 73 4.4E-14 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS12880 737e9b062a8fb7beecff30f815afe324 191 SUPERFAMILY SSF88946 6 89 5.1E-20 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS12880 737e9b062a8fb7beecff30f815afe324 191 Gene3D G3DSA:1.10.1740.10 6 97 2.2E-22 T 23-04-2016 NIDE_RS12880 737e9b062a8fb7beecff30f815afe324 191 Gene3D G3DSA:1.10.10.10 105 167 6.9E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS12880 737e9b062a8fb7beecff30f815afe324 191 Pfam PF08281 Sigma-70, region 4 109 160 1.3E-14 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS12880 737e9b062a8fb7beecff30f815afe324 191 TIGRFAM TIGR02959 SigZ: RNA polymerase sigma factor, SigZ family 9 185 6.1E-57 T 23-04-2016 IPR014304 RNA polymerase sigma-Z type NIDE_RS12880 737e9b062a8fb7beecff30f815afe324 191 PANTHER PTHR30173:SF23 6 185 8.9E-47 T 23-04-2016 NIDE_RS10585 b39f8838c16e772b2ffd55bad0977abe 243 SMART SM00858 118 180 2.8E-6 T 23-04-2016 IPR013974 SAF domain NIDE_RS10585 b39f8838c16e772b2ffd55bad0977abe 243 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 107 241 2.5E-34 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal NIDE_RS10585 b39f8838c16e772b2ffd55bad0977abe 243 PANTHER PTHR36307 43 241 2.8E-26 T 23-04-2016 NIDE_RS10585 b39f8838c16e772b2ffd55bad0977abe 243 Pfam PF13144 Chaperone for flagella basal body P-ring formation 42 241 1.4E-37 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal NIDE_RS19375 84b09f2192ba01cbd0bd30eecc66f416 246 SUPERFAMILY SSF46689 12 113 2.81E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS19375 84b09f2192ba01cbd0bd30eecc66f416 246 SUPERFAMILY SSF53098 136 245 2.4E-17 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS19375 84b09f2192ba01cbd0bd30eecc66f416 246 Pfam PF00665 Integrase core domain 136 244 4.7E-12 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS19375 84b09f2192ba01cbd0bd30eecc66f416 246 Pfam PF13384 Homeodomain-like domain 15 51 3.0E-6 T 23-04-2016 NIDE_RS19375 84b09f2192ba01cbd0bd30eecc66f416 246 Gene3D G3DSA:3.30.420.10 137 244 2.5E-15 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS13905 ba89b6c0f6dcff6812830a57b50a52f4 581 Gene3D G3DSA:3.40.50.300 338 569 1.3E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13905 ba89b6c0f6dcff6812830a57b50a52f4 581 Pfam PF00664 ABC transporter transmembrane region 22 285 8.7E-63 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS13905 ba89b6c0f6dcff6812830a57b50a52f4 581 SMART SM00382 364 550 3.4E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS13905 ba89b6c0f6dcff6812830a57b50a52f4 581 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 7 577 2.3E-189 T 23-04-2016 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 NIDE_RS13905 ba89b6c0f6dcff6812830a57b50a52f4 581 SUPERFAMILY SSF52540 328 575 1.3E-93 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13905 ba89b6c0f6dcff6812830a57b50a52f4 581 Gene3D G3DSA:1.20.1560.10 9 323 1.8E-92 T 23-04-2016 NIDE_RS13905 ba89b6c0f6dcff6812830a57b50a52f4 581 Pfam PF00005 ABC transporter 355 504 5.3E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS13905 ba89b6c0f6dcff6812830a57b50a52f4 581 PANTHER PTHR24221 7 575 7.6E-247 T 23-04-2016 NIDE_RS13905 ba89b6c0f6dcff6812830a57b50a52f4 581 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS13905 ba89b6c0f6dcff6812830a57b50a52f4 581 SUPERFAMILY SSF90123 9 321 1.83E-89 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS19090 6d6e13ab527df38f2aeab10a4d39653c 396 PANTHER PTHR13693:SF60 1 396 8.5E-230 T 23-04-2016 NIDE_RS19090 6d6e13ab527df38f2aeab10a4d39653c 396 PANTHER PTHR13693 1 396 8.5E-230 T 23-04-2016 NIDE_RS19090 6d6e13ab527df38f2aeab10a4d39653c 396 Pfam PF00155 Aminotransferase class I and II 43 384 2.5E-67 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NIDE_RS19090 6d6e13ab527df38f2aeab10a4d39653c 396 SUPERFAMILY SSF53383 10 393 2.89E-114 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS19090 6d6e13ab527df38f2aeab10a4d39653c 396 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 8 395 6.9E-183 T 23-04-2016 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|UniPathway: UPA00046 NIDE_RS19090 6d6e13ab527df38f2aeab10a4d39653c 396 Gene3D G3DSA:3.40.640.10 61 276 7.6E-84 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS19090 6d6e13ab527df38f2aeab10a4d39653c 396 Gene3D G3DSA:3.90.1150.10 277 390 1.2E-29 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS19090 6d6e13ab527df38f2aeab10a4d39653c 396 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 3 393 50.029 T 23-04-2016 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|UniPathway: UPA00046 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 424 441 2.5E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 441 461 2.5E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 Gene3D G3DSA:1.10.10.60 409 457 1.4E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 Gene3D G3DSA:3.40.50.300 142 316 8.9E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 Gene3D G3DSA:1.10.8.60 317 390 9.4E-24 T 23-04-2016 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 Pfam PF00158 Sigma-54 interaction domain 144 311 2.6E-71 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 Pfam PF02954 Bacterial regulatory protein, Fis family 418 457 2.9E-8 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 Pfam PF00072 Response regulator receiver domain 6 112 9.6E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 SMART SM00382 164 307 2.0E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 SUPERFAMILY SSF52172 1 188 7.12E-47 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 SMART SM00448 4 115 6.6E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 Gene3D G3DSA:3.40.50.2300 5 134 7.2E-39 T 23-04-2016 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 SUPERFAMILY SSF52540 144 387 3.72E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 SUPERFAMILY SSF46689 357 460 4.35E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS10425 6958e7259f95f1291966a50660d4ed18 471 PANTHER PTHR32071 6 471 7.5E-200 T 23-04-2016 NIDE_RS13245 54839444e128598b7300671145b708f0 355 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 31 355 1.2E-109 T 23-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase NIDE_RS13245 54839444e128598b7300671145b708f0 355 Gene3D G3DSA:3.40.50.720 33 110 3.5E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13245 54839444e128598b7300671145b708f0 355 PANTHER PTHR30576 33 355 1.5E-97 T 23-04-2016 NIDE_RS13245 54839444e128598b7300671145b708f0 355 Pfam PF02397 Bacterial sugar transferase 167 349 6.8E-56 T 23-04-2016 IPR003362 Bacterial sugar transferase NIDE_RS13245 54839444e128598b7300671145b708f0 355 TIGRFAM TIGR03013 EpsB_2: sugar transferase, PEP-CTERM system associated 24 355 1.8E-124 T 23-04-2016 IPR017464 Sugar transferase, PEP-CTERM system associated NIDE_RS13245 54839444e128598b7300671145b708f0 355 PANTHER PTHR30576:SF0 33 355 1.5E-97 T 23-04-2016 NIDE_RS18090 b99a182bbc0c4d134cf957a58ea26109 558 SUPERFAMILY SSF52540 346 558 2.67E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18090 b99a182bbc0c4d134cf957a58ea26109 558 PANTHER PTHR24221:SF138 16 510 5.3E-32 T 23-04-2016 NIDE_RS18090 b99a182bbc0c4d134cf957a58ea26109 558 Pfam PF00005 ABC transporter 367 510 2.9E-8 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS18090 b99a182bbc0c4d134cf957a58ea26109 558 SUPERFAMILY SSF90123 26 334 2.09E-17 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS18090 b99a182bbc0c4d134cf957a58ea26109 558 Gene3D G3DSA:1.20.1560.10 26 329 3.0E-10 T 23-04-2016 NIDE_RS18090 b99a182bbc0c4d134cf957a58ea26109 558 PANTHER PTHR24221 16 510 5.3E-32 T 23-04-2016 NIDE_RS18090 b99a182bbc0c4d134cf957a58ea26109 558 Gene3D G3DSA:3.40.50.300 349 558 2.1E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 SUPERFAMILY SSF54752 271 328 5.1E-20 T 23-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 327 5.7E-173 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 Hamap MF_00268 Protein RecA [recA]. 7 332 52.475 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 ProSitePatterns PS00321 recA signature. 216 224 - T 23-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 PANTHER PTHR22942:SF1 1 338 5.6E-207 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 Gene3D G3DSA:3.40.50.300 34 270 4.0E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 Gene3D G3DSA:3.30.250.10 271 327 1.1E-26 T 23-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 PRINTS PR00142 RecA protein signature 130 159 9.5E-83 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 PRINTS PR00142 RecA protein signature 246 275 9.5E-83 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 PRINTS PR00142 RecA protein signature 96 125 9.5E-83 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 PRINTS PR00142 RecA protein signature 168 197 9.5E-83 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 PRINTS PR00142 RecA protein signature 213 241 9.5E-83 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 PRINTS PR00142 RecA protein signature 300 317 9.5E-83 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 PANTHER PTHR22942 1 338 5.6E-207 T 23-04-2016 NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 SMART SM00382 60 231 1.0E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 SUPERFAMILY SSF52540 5 270 4.25E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07825 49bf433e37e8835a7fe6e75011c715cf 370 Pfam PF00154 recA bacterial DNA recombination protein 9 271 1.4E-144 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 NIDE_RS19390 c868ca03b363a9e585a790e2a8a4bbb4 348 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 NIDE_RS19390 c868ca03b363a9e585a790e2a8a4bbb4 348 Gene3D G3DSA:3.90.180.10 4 178 6.8E-64 T 23-04-2016 IPR011032 GroES-like NIDE_RS19390 c868ca03b363a9e585a790e2a8a4bbb4 348 SMART SM00829 8 342 8.2E-5 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 NIDE_RS19390 c868ca03b363a9e585a790e2a8a4bbb4 348 SUPERFAMILY SSF51735 150 312 1.18E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19390 c868ca03b363a9e585a790e2a8a4bbb4 348 Pfam PF00107 Zinc-binding dehydrogenase 186 307 3.1E-24 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 NIDE_RS19390 c868ca03b363a9e585a790e2a8a4bbb4 348 PANTHER PTHR11695 16 346 7.6E-160 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 NIDE_RS19390 c868ca03b363a9e585a790e2a8a4bbb4 348 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 144 1.4E-28 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 NIDE_RS19390 c868ca03b363a9e585a790e2a8a4bbb4 348 Gene3D G3DSA:3.40.50.720 179 292 4.8E-22 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19390 c868ca03b363a9e585a790e2a8a4bbb4 348 PANTHER PTHR11695:SF582 16 346 7.6E-160 T 23-04-2016 NIDE_RS19390 c868ca03b363a9e585a790e2a8a4bbb4 348 SUPERFAMILY SSF50129 9 174 9.75E-52 T 23-04-2016 IPR011032 GroES-like NIDE_RS19925 8da48b38d58ebb499c54156e08cd2308 103 PANTHER PTHR40663:SF2 1 100 1.1E-21 T 23-04-2016 NIDE_RS19925 8da48b38d58ebb499c54156e08cd2308 103 Gene3D G3DSA:1.10.10.10 4 48 1.7E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS19925 8da48b38d58ebb499c54156e08cd2308 103 SUPERFAMILY SSF46785 4 99 1.5E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS19925 8da48b38d58ebb499c54156e08cd2308 103 PANTHER PTHR40663 1 100 1.1E-21 T 23-04-2016 NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 PANTHER PTHR31964:SF26 1 160 5.5E-23 T 23-04-2016 NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 PRINTS PR01438 Universal stress protein signature 245 257 1.1E-14 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 PRINTS PR01438 Universal stress protein signature 263 285 1.1E-14 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 PRINTS PR01438 Universal stress protein signature 148 166 1.1E-14 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 SUPERFAMILY SSF52402 2 144 4.1E-28 T 23-04-2016 NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 Gene3D G3DSA:3.40.50.620 146 285 1.0E-27 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 Gene3D G3DSA:3.40.50.620 2 144 5.4E-28 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 PANTHER PTHR31964 1 160 5.5E-23 T 23-04-2016 NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 Pfam PF00582 Universal stress protein family 2 142 2.1E-21 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 Pfam PF00582 Universal stress protein family 149 285 1.3E-19 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS17605 c90ad78e1315f751ad13adaef97b452a 285 SUPERFAMILY SSF52402 149 285 5.61E-27 T 23-04-2016 NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 Gene3D G3DSA:3.60.120.10 20 496 4.2E-181 T 23-04-2016 IPR005801 ADC synthase GO:0009058 NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 Pfam PF04715 Anthranilate synthase component I, N terminal region 33 171 9.0E-35 T 23-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 PRINTS PR00095 Anthranilate synthase component I signature 344 357 2.2E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 PRINTS PR00095 Anthranilate synthase component I signature 330 343 2.2E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 PRINTS PR00095 Anthranilate synthase component I signature 424 438 2.2E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 PRINTS PR00095 Anthranilate synthase component I signature 439 453 2.2E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 PANTHER PTHR11236 5 495 1.3E-255 T 23-04-2016 NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 SUPERFAMILY SSF56322 20 493 6.28E-163 T 23-04-2016 IPR005801 ADC synthase GO:0009058 NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 Pfam PF00425 chorismate binding enzyme 229 482 1.2E-102 T 23-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 32 491 2.2E-181 T 23-04-2016 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS09320 2f1fc8e7f13306ee2cebb814304f7325 498 PANTHER PTHR11236:SF9 5 495 1.3E-255 T 23-04-2016 NIDE_RS13910 4e20d5ac1e2506f0b91669c1d52f7ceb 377 PANTHER PTHR30372:SF0 3 372 1.6E-109 T 23-04-2016 NIDE_RS13910 4e20d5ac1e2506f0b91669c1d52f7ceb 377 Pfam PF02684 Lipid-A-disaccharide synthetase 4 347 1.0E-89 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 NIDE_RS13910 4e20d5ac1e2506f0b91669c1d52f7ceb 377 PANTHER PTHR30372 3 372 1.6E-109 T 23-04-2016 NIDE_RS13910 4e20d5ac1e2506f0b91669c1d52f7ceb 377 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 373 5.3E-84 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 NIDE_RS13910 4e20d5ac1e2506f0b91669c1d52f7ceb 377 Gene3D G3DSA:3.40.50.2000 154 350 1.7E-16 T 23-04-2016 NIDE_RS13910 4e20d5ac1e2506f0b91669c1d52f7ceb 377 SUPERFAMILY SSF53756 3 372 8.85E-45 T 23-04-2016 NIDE_RS18765 f5c62c7e9cb70f64937690b038a6d7f8 352 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 320 1.4E-69 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIDE_RS18765 f5c62c7e9cb70f64937690b038a6d7f8 352 SUPERFAMILY SSF53686 6 335 7.2E-104 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIDE_RS18765 f5c62c7e9cb70f64937690b038a6d7f8 352 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 54 67 - T 23-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 NIDE_RS18765 f5c62c7e9cb70f64937690b038a6d7f8 352 TIGRFAM TIGR00260 thrC: threonine synthase 8 327 8.9E-97 T 23-04-2016 IPR004450 Threonine synthase-like NIDE_RS18765 f5c62c7e9cb70f64937690b038a6d7f8 352 Gene3D G3DSA:3.40.50.1100 147 334 1.6E-46 T 23-04-2016 NIDE_RS18765 f5c62c7e9cb70f64937690b038a6d7f8 352 Gene3D G3DSA:3.40.50.1100 62 146 7.9E-41 T 23-04-2016 NIDE_RS18765 f5c62c7e9cb70f64937690b038a6d7f8 352 PANTHER PTHR10314:SF5 1 330 7.7E-136 T 23-04-2016 NIDE_RS18765 f5c62c7e9cb70f64937690b038a6d7f8 352 PANTHER PTHR10314 1 330 7.7E-136 T 23-04-2016 NIDE_RS18765 f5c62c7e9cb70f64937690b038a6d7f8 352 PIRSF PIRSF038945 1 352 1.3E-163 T 23-04-2016 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1|UniPathway: UPA00050 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 Pfam PF17191 RecG wedge domain 135 299 2.3E-21 T 23-04-2016 IPR033454 RecG, wedge domain NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 Pfam PF00270 DEAD/DEAH box helicase 405 562 6.6E-16 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 SUPERFAMILY SSF50249 133 305 1.67E-36 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 PANTHER PTHR24031:SF249 771 818 1.5E-116 T 23-04-2016 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 PANTHER PTHR24031:SF249 37 70 1.5E-116 T 23-04-2016 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 PANTHER PTHR24031:SF249 432 731 1.5E-116 T 23-04-2016 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 PANTHER PTHR24031:SF249 325 415 1.5E-116 T 23-04-2016 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 SUPERFAMILY SSF52540 521 729 1.7E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 SUPERFAMILY SSF52540 350 582 1.17E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 PANTHER PTHR24031 771 818 1.5E-116 T 23-04-2016 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 PANTHER PTHR24031 37 70 1.5E-116 T 23-04-2016 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 PANTHER PTHR24031 432 731 1.5E-116 T 23-04-2016 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 PANTHER PTHR24031 325 415 1.5E-116 T 23-04-2016 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 Pfam PF00271 Helicase conserved C-terminal domain 607 717 9.5E-20 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 SMART SM00487 398 588 2.0E-32 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 Gene3D G3DSA:2.40.50.140 172 271 7.9E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 154 810 1.4E-209 T 23-04-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 Gene3D G3DSA:3.40.50.300 389 582 4.3E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 SMART SM00490 633 718 2.2E-21 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS06530 f81eef23af1a75782c4ff6e86dea6caa 846 Gene3D G3DSA:3.40.50.300 583 782 4.5E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13770 644b12607e0c583576717cbeddec80e9 487 PANTHER PTHR30250 4 420 2.5E-46 T 23-04-2016 NIDE_RS13770 644b12607e0c583576717cbeddec80e9 487 PANTHER PTHR30250:SF8 4 420 2.5E-46 T 23-04-2016 NIDE_RS13770 644b12607e0c583576717cbeddec80e9 487 Pfam PF13440 Polysaccharide biosynthesis protein 45 333 5.9E-12 T 23-04-2016 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Gene3D G3DSA:3.40.50.10190 593 668 8.9E-23 T 23-04-2016 IPR001357 BRCT domain NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 SUPERFAMILY SSF47781 404 582 1.85E-57 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Gene3D G3DSA:2.40.50.140 321 390 6.8E-31 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 5 318 9.4E-121 T 23-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Pfam PF14520 Helix-hairpin-helix domain 445 498 3.8E-4 T 23-04-2016 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 332 347 - T 23-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 PANTHER PTHR23389 4 532 3.2E-181 T 23-04-2016 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 SUPERFAMILY SSF50249 319 392 5.31E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 PANTHER PTHR23389:SF9 4 532 3.2E-181 T 23-04-2016 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Hamap MF_01588 DNA ligase [ligA]. 4 667 51.285 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 SUPERFAMILY SSF52113 592 667 1.6E-18 T 23-04-2016 IPR001357 BRCT domain NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Gene3D G3DSA:1.10.150.20 503 582 4.5E-26 T 23-04-2016 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Pfam PF12826 Helix-hairpin-helix motif 509 572 4.6E-22 T 23-04-2016 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Gene3D G3DSA:1.10.150.20 434 502 2.7E-25 T 23-04-2016 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Gene3D G3DSA:1.10.287.610 3 69 1.4E-29 T 23-04-2016 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 SMART SM00278 445 464 16.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 SMART SM00278 479 498 500.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 SMART SM00278 543 562 320.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 596 666 5.4E-14 T 23-04-2016 IPR001357 BRCT domain NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 SMART SM00292 593 670 6.8E-13 T 23-04-2016 IPR001357 BRCT domain NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 323 392 1.4E-29 T 23-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 116 145 - T 23-04-2016 IPR018239 NAD-dependent DNA ligase, active site NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 PIRSF PIRSF001604 1 670 6.7E-244 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 663 1.3E-245 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 SMART SM00532 5 447 1.8E-234 T 23-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 SUPERFAMILY SSF56091 2 316 6.88E-114 T 23-04-2016 NIDE_RS09300 51a75549e507da8165abe7a0de503b78 670 Gene3D G3DSA:3.30.470.30 120 253 9.1E-46 T 23-04-2016 NIDE_RS04385 9659c374aacdd40d7f3de0c8157e0a29 257 PANTHER PTHR11599:SF58 34 221 6.7E-32 T 23-04-2016 NIDE_RS04385 9659c374aacdd40d7f3de0c8157e0a29 257 Gene3D G3DSA:3.60.20.10 29 249 5.0E-35 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS04385 9659c374aacdd40d7f3de0c8157e0a29 257 Pfam PF00227 Proteasome subunit 32 181 3.4E-23 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 NIDE_RS04385 9659c374aacdd40d7f3de0c8157e0a29 257 PANTHER PTHR11599 34 221 6.7E-32 T 23-04-2016 NIDE_RS04385 9659c374aacdd40d7f3de0c8157e0a29 257 SUPERFAMILY SSF56235 28 250 6.11E-36 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS15070 9a3842738431cc03ea5b44412f411591 304 PANTHER PTHR23150 65 297 7.0E-65 T 23-04-2016 NIDE_RS15070 9a3842738431cc03ea5b44412f411591 304 SUPERFAMILY SSF56436 68 297 1.7E-69 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS15070 9a3842738431cc03ea5b44412f411591 304 Pfam PF03781 Sulfatase-modifying factor enzyme 1 69 295 1.3E-57 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS15070 9a3842738431cc03ea5b44412f411591 304 Gene3D G3DSA:3.90.1580.10 64 298 6.4E-69 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS15220 0683a60aad34ff9f7aa883b3a92e7b00 523 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 368 379 2.7E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS15220 0683a60aad34ff9f7aa883b3a92e7b00 523 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 293 310 2.7E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS15220 0683a60aad34ff9f7aa883b3a92e7b00 523 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 441 460 2.7E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS15220 0683a60aad34ff9f7aa883b3a92e7b00 523 PANTHER PTHR13078 22 61 3.3E-13 T 23-04-2016 NIDE_RS15220 0683a60aad34ff9f7aa883b3a92e7b00 523 SUPERFAMILY SSF54637 17 100 1.93E-15 T 23-04-2016 IPR029069 HotDog domain NIDE_RS15220 0683a60aad34ff9f7aa883b3a92e7b00 523 Gene3D G3DSA:3.10.129.10 15 99 7.0E-17 T 23-04-2016 IPR029069 HotDog domain NIDE_RS15220 0683a60aad34ff9f7aa883b3a92e7b00 523 SUPERFAMILY SSF51735 283 505 2.94E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS15220 0683a60aad34ff9f7aa883b3a92e7b00 523 Pfam PF00106 short chain dehydrogenase 292 477 6.9E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS15220 0683a60aad34ff9f7aa883b3a92e7b00 523 Pfam PF01575 MaoC like domain 19 92 3.3E-9 T 23-04-2016 IPR002539 MaoC-like domain NIDE_RS15220 0683a60aad34ff9f7aa883b3a92e7b00 523 Gene3D G3DSA:3.40.50.720 287 511 2.7E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19080 66ecde7fa1ba3e48c54d9ef07b11b0e4 340 Gene3D G3DSA:3.30.1150.10 208 296 1.1E-7 T 23-04-2016 NIDE_RS19080 66ecde7fa1ba3e48c54d9ef07b11b0e4 340 Pfam PF13103 TonB C terminal 212 286 4.1E-6 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS19080 66ecde7fa1ba3e48c54d9ef07b11b0e4 340 SUPERFAMILY SSF74653 206 300 3.14E-10 T 23-04-2016 NIDE_RS13725 dad30b337e701f9dcdb563207bc4410b 383 TIGRFAM TIGR03568 NeuC_NnaA: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing 4 368 5.2E-123 T 23-04-2016 IPR020004 UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing GO:0004553|GO:0006047 KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18 NIDE_RS13725 dad30b337e701f9dcdb563207bc4410b 383 Gene3D G3DSA:3.40.50.2000 1 211 3.1E-42 T 23-04-2016 NIDE_RS13725 dad30b337e701f9dcdb563207bc4410b 383 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 26 369 1.1E-76 T 23-04-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain NIDE_RS13725 dad30b337e701f9dcdb563207bc4410b 383 SUPERFAMILY SSF53756 3 374 7.46E-78 T 23-04-2016 NIDE_RS13725 dad30b337e701f9dcdb563207bc4410b 383 Gene3D G3DSA:3.40.50.2000 223 369 1.7E-9 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 SUPERFAMILY SSF53067 284 540 2.29E-30 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 Gene3D G3DSA:3.30.420.40 380 520 2.8E-39 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 Gene3D G3DSA:3.30.420.40 81 216 1.2E-27 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 672 881 1.5E-44 T 23-04-2016 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 PANTHER PTHR32329 3 612 2.0E-221 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 PANTHER PTHR32329 637 977 2.0E-221 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 PANTHER PTHR32329 1303 1405 2.0E-221 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 PANTHER PTHR32329 994 1284 2.0E-221 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 284 537 6.7E-42 T 23-04-2016 IPR008275 CoA enzyme activase NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 SUPERFAMILY SSF53067 1 238 1.54E-15 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 PANTHER PTHR32329:SF7 3 612 2.0E-221 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 PANTHER PTHR32329:SF7 637 977 2.0E-221 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 PANTHER PTHR32329:SF7 1303 1405 2.0E-221 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 PANTHER PTHR32329:SF7 994 1284 2.0E-221 T 23-04-2016 NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 286 538 3.8E-39 T 23-04-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type NIDE_RS17450 9c4d9d973e4664e07a549f7defc87d8c 1417 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 79 215 3.6E-13 T 23-04-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type NIDE_RS11425 3f4e6f7dbf47f392ee38002c751d7370 420 TIGRFAM TIGR04336 AmmeMemoSam_B: AmmeMemoRadiSam system protein B 125 419 5.0E-37 T 23-04-2016 IPR002737 MEMO1 family NIDE_RS11425 3f4e6f7dbf47f392ee38002c751d7370 420 PANTHER PTHR11060:SF0 121 419 1.7E-21 T 23-04-2016 NIDE_RS11425 3f4e6f7dbf47f392ee38002c751d7370 420 PANTHER PTHR11060 121 419 1.7E-21 T 23-04-2016 IPR002737 MEMO1 family NIDE_RS11425 3f4e6f7dbf47f392ee38002c751d7370 420 Pfam PF01875 Memo-like protein 127 418 6.2E-40 T 23-04-2016 IPR002737 MEMO1 family NIDE_RS03900 72421d4d3a96576589b6e15237cbcb22 207 SUPERFAMILY SSF52833 21 188 1.51E-42 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS03900 72421d4d3a96576589b6e15237cbcb22 207 Pfam PF00578 AhpC/TSA family 50 168 2.6E-33 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS03900 72421d4d3a96576589b6e15237cbcb22 207 Gene3D G3DSA:3.40.30.10 21 193 3.3E-53 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS03900 72421d4d3a96576589b6e15237cbcb22 207 PANTHER PTHR10681 18 178 6.6E-37 T 23-04-2016 NIDE_RS00725 842e138b84e6bc88095194e6b4f99514 162 PANTHER PTHR11911 1 138 7.1E-24 T 23-04-2016 NIDE_RS00725 842e138b84e6bc88095194e6b4f99514 162 Gene3D G3DSA:3.10.580.10 1 141 5.8E-29 T 23-04-2016 NIDE_RS00725 842e138b84e6bc88095194e6b4f99514 162 SMART SM00116 10 58 6.3E-7 T 23-04-2016 IPR000644 CBS domain NIDE_RS00725 842e138b84e6bc88095194e6b4f99514 162 SMART SM00116 96 143 5.3E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS00725 842e138b84e6bc88095194e6b4f99514 162 SUPERFAMILY SSF54631 1 140 6.06E-32 T 23-04-2016 NIDE_RS00725 842e138b84e6bc88095194e6b4f99514 162 Pfam PF00571 CBS domain 89 138 9.3E-11 T 23-04-2016 IPR000644 CBS domain NIDE_RS00725 842e138b84e6bc88095194e6b4f99514 162 Pfam PF00571 CBS domain 3 54 5.8E-12 T 23-04-2016 IPR000644 CBS domain NIDE_RS20355 1ccffe0fc28e864ad47ecb8414c7a8da 219 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 47 141 7.3E-43 T 23-04-2016 IPR012997 Rare lipoprotein A NIDE_RS20355 1ccffe0fc28e864ad47ecb8414c7a8da 219 Gene3D G3DSA:2.40.40.10 51 136 2.0E-5 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain NIDE_RS20355 1ccffe0fc28e864ad47ecb8414c7a8da 219 PANTHER PTHR34183:SF2 44 137 4.9E-46 T 23-04-2016 NIDE_RS20355 1ccffe0fc28e864ad47ecb8414c7a8da 219 SUPERFAMILY SSF50685 47 137 6.98E-12 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain NIDE_RS20355 1ccffe0fc28e864ad47ecb8414c7a8da 219 PANTHER PTHR34183 44 137 4.9E-46 T 23-04-2016 NIDE_RS20355 1ccffe0fc28e864ad47ecb8414c7a8da 219 Pfam PF03330 Lytic transglycolase 46 134 1.9E-24 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain NIDE_RS05180 e9ec337f67028ff6cefd3e84c67eeb38 343 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 198 209 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS05180 e9ec337f67028ff6cefd3e84c67eeb38 343 Gene3D G3DSA:3.30.70.20 196 265 9.6E-8 T 23-04-2016 NIDE_RS05180 e9ec337f67028ff6cefd3e84c67eeb38 343 Pfam PF08331 Domain of unknown function (DUF1730) 71 145 8.6E-24 T 23-04-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS05180 e9ec337f67028ff6cefd3e84c67eeb38 343 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 2 323 45.177 T 23-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS05180 e9ec337f67028ff6cefd3e84c67eeb38 343 PANTHER PTHR30002:SF4 1 324 3.4E-122 T 23-04-2016 NIDE_RS05180 e9ec337f67028ff6cefd3e84c67eeb38 343 SUPERFAMILY SSF46548 144 265 9.42E-17 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 NIDE_RS05180 e9ec337f67028ff6cefd3e84c67eeb38 343 Pfam PF13484 4Fe-4S double cluster binding domain 198 264 1.4E-17 T 23-04-2016 NIDE_RS05180 e9ec337f67028ff6cefd3e84c67eeb38 343 PANTHER PTHR30002 1 324 3.4E-122 T 23-04-2016 NIDE_RS05180 e9ec337f67028ff6cefd3e84c67eeb38 343 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 9 326 3.0E-107 T 23-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS18000 9780184bf1201505eed6213d7dc10f52 325 SUPERFAMILY SSF52922 186 322 4.45E-43 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS18000 9780184bf1201505eed6213d7dc10f52 325 Gene3D G3DSA:3.40.50.970 3 194 5.8E-90 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS18000 9780184bf1201505eed6213d7dc10f52 325 SUPERFAMILY SSF52518 3 202 1.42E-70 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS18000 9780184bf1201505eed6213d7dc10f52 325 Pfam PF02779 Transketolase, pyrimidine binding domain 3 177 1.1E-49 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain NIDE_RS18000 9780184bf1201505eed6213d7dc10f52 325 Pfam PF02780 Transketolase, C-terminal domain 192 314 9.1E-42 T 23-04-2016 IPR033248 Transketolase, C-terminal domain NIDE_RS18000 9780184bf1201505eed6213d7dc10f52 325 PANTHER PTHR11624 3 325 2.6E-168 T 23-04-2016 IPR033247 Transketolase family NIDE_RS18000 9780184bf1201505eed6213d7dc10f52 325 SMART SM00861 3 178 2.8E-68 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain NIDE_RS18000 9780184bf1201505eed6213d7dc10f52 325 Gene3D G3DSA:3.40.50.920 195 319 4.4E-45 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS19885 931f45b7cad707c8c6ed77c20c1eb584 207 PANTHER PTHR10173 24 183 4.8E-67 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 NIDE_RS19885 931f45b7cad707c8c6ed77c20c1eb584 207 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 37 187 3.8E-58 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 NIDE_RS19885 931f45b7cad707c8c6ed77c20c1eb584 207 PANTHER PTHR10173:SF6 24 183 4.8E-67 T 23-04-2016 NIDE_RS19885 931f45b7cad707c8c6ed77c20c1eb584 207 SUPERFAMILY SSF55068 19 199 8.76E-73 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 NIDE_RS19885 931f45b7cad707c8c6ed77c20c1eb584 207 Gene3D G3DSA:3.30.1060.10 28 187 7.0E-70 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 NIDE_RS19885 931f45b7cad707c8c6ed77c20c1eb584 207 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 35 194 36.761 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 NIDE_RS19885 931f45b7cad707c8c6ed77c20c1eb584 207 Pfam PF01625 Peptide methionine sulfoxide reductase 37 188 2.1E-61 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 PANTHER PTHR18968 1 552 1.6E-122 T 23-04-2016 NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 SUPERFAMILY SSF52518 379 576 2.32E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 SUPERFAMILY SSF52518 1 178 5.89E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 Gene3D G3DSA:3.40.50.970 361 557 9.0E-50 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 Gene3D G3DSA:3.40.50.970 2 182 4.7E-54 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 Gene3D G3DSA:3.40.50.1220 196 360 2.8E-39 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 338 3.2E-27 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 176 6.6E-46 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 SUPERFAMILY SSF52467 160 368 7.36E-38 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 PANTHER PTHR18968:SF13 1 552 1.6E-122 T 23-04-2016 NIDE_RS10680 951d3a836e2b1be01f102bddc8e32895 612 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 409 552 6.4E-35 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 SMART SM00271 7 69 3.2E-18 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 SUPERFAMILY SSF46565 5 77 1.57E-21 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 Pfam PF02732 ERCC4 domain 150 261 2.8E-6 T 23-04-2016 IPR006166 ERCC4 domain GO:0003677|GO:0004518 NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 Gene3D G3DSA:1.10.287.110 7 79 1.5E-20 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 PRINTS PR00625 DnaJ domain signature 49 69 6.4E-7 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 PRINTS PR00625 DnaJ domain signature 28 43 6.4E-7 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 PRINTS PR00625 DnaJ domain signature 10 28 6.4E-7 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 Gene3D G3DSA:3.40.50.10130 127 264 7.5E-16 T 23-04-2016 IPR020819 DNA repair nuclease, XPF-type/Helicase GO:0003677|GO:0004518|GO:0006259 NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 Pfam PF00226 DnaJ domain 8 74 1.5E-16 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 PANTHER PTHR24078 3 74 9.1E-18 T 23-04-2016 NIDE_RS20850 f338ac001e5d1e95d5f2cb8a76e52d74 286 SUPERFAMILY SSF52980 127 262 2.95E-10 T 23-04-2016 IPR011335 Restriction endonuclease type II-like NIDE_RS01490 0d1a1e1496cb956e15b1717629e5b5a0 393 Gene3D G3DSA:3.60.70.12 12 386 6.8E-135 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 NIDE_RS01490 0d1a1e1496cb956e15b1717629e5b5a0 393 SUPERFAMILY SSF56266 12 385 2.12E-103 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 NIDE_RS01490 0d1a1e1496cb956e15b1717629e5b5a0 393 Pfam PF03576 Peptidase family S58 31 370 4.5E-114 T 23-04-2016 IPR005321 Peptidase S58, DmpA NIDE_RS01490 0d1a1e1496cb956e15b1717629e5b5a0 393 PANTHER PTHR36512 13 389 1.8E-113 T 23-04-2016 NIDE_RS01490 0d1a1e1496cb956e15b1717629e5b5a0 393 PANTHER PTHR36512:SF1 13 389 1.8E-113 T 23-04-2016 NIDE_RS01335 151f618de0ad8660a1d879cf0b58c3c9 145 Gene3D G3DSA:3.40.50.10140 19 129 8.8E-16 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 NIDE_RS01335 151f618de0ad8660a1d879cf0b58c3c9 145 Pfam PF13676 TIR domain 19 128 5.3E-24 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 NIDE_RS01335 151f618de0ad8660a1d879cf0b58c3c9 145 SUPERFAMILY SSF52200 19 143 2.88E-21 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 NIDE_RS17835 6e88b5ebcf07c97fd701e8d4d1f0db23 112 Gene3D G3DSA:2.60.120.10 8 104 2.3E-20 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS17835 6e88b5ebcf07c97fd701e8d4d1f0db23 112 SUPERFAMILY SSF51182 7 103 6.57E-22 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS17835 6e88b5ebcf07c97fd701e8d4d1f0db23 112 Pfam PF07883 Cupin domain 33 100 1.1E-14 T 23-04-2016 IPR013096 Cupin 2, conserved barrel NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 4 160 26.883 T 23-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 SUPERFAMILY SSF56762 209 583 1.44E-140 T 23-04-2016 IPR029014 NiFe hydrogenase-like NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 199 583 1.3E-172 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 Pfam PF00374 Nickel-dependent hydrogenase 238 307 4.2E-7 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 313 583 3.4E-122 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 Gene3D G3DSA:1.10.645.10 426 567 6.9E-21 T 23-04-2016 IPR029014 NiFe hydrogenase-like NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 Gene3D G3DSA:1.10.645.10 202 424 1.1E-48 T 23-04-2016 IPR029014 NiFe hydrogenase-like NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 Hamap MF_01397 NADH-quinone oxidoreductase subunit C/D [nuoC]. 26 583 43.127 T 23-04-2016 IPR026662 NADH-quinone oxidoreductase subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 189 583 49.095 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 112 133 - T 23-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 PANTHER PTHR11993 148 578 8.6E-218 T 23-04-2016 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 31 153 1.8E-42 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 SUPERFAMILY SSF143243 3 213 1.29E-49 T 23-04-2016 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 32 151 1.8E-39 T 23-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 81 138 2.0E-13 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 NIDE_RS02835 42b57852673d14cc45d54e682d51c9c1 583 PANTHER PTHR11993:SF10 148 578 8.6E-218 T 23-04-2016 NIDE_RS14575 728bd19193beee71a009cf7c4bfc2902 177 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 32 161 2.6E-13 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 NIDE_RS14575 728bd19193beee71a009cf7c4bfc2902 177 Gene3D G3DSA:3.10.50.40 146 164 1.3E-20 T 23-04-2016 NIDE_RS14575 728bd19193beee71a009cf7c4bfc2902 177 Gene3D G3DSA:3.10.50.40 32 98 1.3E-20 T 23-04-2016 NIDE_RS14575 728bd19193beee71a009cf7c4bfc2902 177 SUPERFAMILY SSF54534 32 163 1.96E-31 T 23-04-2016 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 Gene3D G3DSA:1.25.40.10 47 225 1.3E-22 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 Gene3D G3DSA:1.25.40.10 267 304 1.3E-22 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 Gene3D G3DSA:1.25.40.10 369 398 1.3E-22 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SUPERFAMILY SSF48452 559 648 1.54E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SUPERFAMILY SSF48452 370 404 1.54E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 Gene3D G3DSA:1.25.40.10 560 626 3.6E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 Gene3D G3DSA:1.25.40.10 486 519 3.6E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 Pfam PF13432 Tetratricopeptide repeat 354 396 1.1E-4 T 23-04-2016 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 Pfam PF13432 Tetratricopeptide repeat 496 545 4.2E-4 T 23-04-2016 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SUPERFAMILY SSF48452 451 521 1.36E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SUPERFAMILY SSF48452 277 406 1.36E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 Pfam PF13181 Tetratricopeptide repeat 123 152 0.04 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SUPERFAMILY SSF48452 123 304 2.46E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SUPERFAMILY SSF48452 47 78 2.46E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SMART SM00028 271 304 73.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SMART SM00028 369 402 0.008 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SMART SM00028 121 154 57.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SMART SM00028 196 229 240.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SMART SM00028 564 597 420.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 SMART SM00028 159 192 240.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS10430 b383dad1b7a3af666eab504265909445 693 Pfam PF13174 Tetratricopeptide repeat 273 303 0.0034 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15205 5b6f537ee1c1900e809df7126654aa44 108 SUPERFAMILY SSF54928 3 107 1.02E-36 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 NIDE_RS15205 5b6f537ee1c1900e809df7126654aa44 108 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 74 1.4E-25 T 23-04-2016 IPR000504 RNA recognition motif domain GO:0003676 NIDE_RS15205 5b6f537ee1c1900e809df7126654aa44 108 Gene3D G3DSA:3.30.70.330 3 96 4.5E-34 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 NIDE_RS15205 5b6f537ee1c1900e809df7126654aa44 108 SMART SM00360 4 77 2.0E-30 T 23-04-2016 IPR000504 RNA recognition motif domain GO:0003676 NIDE_RS15205 5b6f537ee1c1900e809df7126654aa44 108 PANTHER PTHR24012 4 97 4.8E-34 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 Gene3D G3DSA:3.30.230.10 281 452 2.0E-30 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 PANTHER PTHR32472 2 452 2.1E-205 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 TIGRFAM TIGR00416 sms: DNA repair protein RadA 2 448 8.8E-188 T 23-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 SUPERFAMILY SSF54211 299 451 7.21E-39 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 SUPERFAMILY SSF54211 251 265 7.21E-39 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 SMART SM00382 86 240 8.9E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 SUPERFAMILY SSF52540 67 285 3.06E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 PANTHER PTHR32472:SF10 2 452 2.1E-205 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 Pfam PF13481 AAA domain 81 218 8.3E-12 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 PRINTS PR01874 DNA repair protein radA signature 318 341 6.6E-89 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 PRINTS PR01874 DNA repair protein radA signature 244 270 6.6E-89 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 PRINTS PR01874 DNA repair protein radA signature 170 194 6.6E-89 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 PRINTS PR01874 DNA repair protein radA signature 9 33 6.6E-89 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 PRINTS PR01874 DNA repair protein radA signature 120 137 6.6E-89 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 PRINTS PR01874 DNA repair protein radA signature 78 106 6.6E-89 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 PRINTS PR01874 DNA repair protein radA signature 209 237 6.6E-89 T 23-04-2016 NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 Gene3D G3DSA:3.40.50.300 66 273 1.2E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07700 b2527d65c3c5a4d77022f3b5e5aa6588 453 Pfam PF13541 Subunit ChlI of Mg-chelatase 343 426 1.4E-6 T 23-04-2016 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 142 151 6.2E-5 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 117 136 6.2E-5 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 60 67 6.2E-5 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 Pfam PF00175 Oxidoreductase NAD-binding domain 118 224 3.5E-19 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 Pfam PF00970 Oxidoreductase FAD-binding domain 12 106 2.3E-7 T 23-04-2016 IPR008333 Oxidoreductase, FAD-binding domain NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 SUPERFAMILY SSF63380 11 107 7.7E-15 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 Gene3D G3DSA:2.40.30.10 12 97 2.3E-14 T 23-04-2016 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 Gene3D G3DSA:3.40.50.80 98 239 2.7E-36 T 23-04-2016 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 PANTHER PTHR19370:SF32 10 245 1.2E-43 T 23-04-2016 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 SUPERFAMILY SSF52343 97 241 9.82E-35 T 23-04-2016 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 PANTHER PTHR19370 10 245 1.2E-43 T 23-04-2016 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 PRINTS PR00410 Phenol hydroxylase reductase family signature 211 219 1.9E-13 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 PRINTS PR00410 Phenol hydroxylase reductase family signature 117 136 1.9E-13 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 PRINTS PR00410 Phenol hydroxylase reductase family signature 37 49 1.9E-13 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 PRINTS PR00410 Phenol hydroxylase reductase family signature 142 151 1.9E-13 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS00090 21601dd7028fc512101835cb6f9d0f9e 246 PRINTS PR00410 Phenol hydroxylase reductase family signature 101 110 1.9E-13 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 Pfam PF01336 OB-fold nucleic acid binding domain 987 1064 4.8E-10 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 299 727 3.2E-177 T 23-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1024 0.0 T 23-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 PANTHER PTHR32294:SF0 2 1150 0.0 T 23-04-2016 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 PANTHER PTHR32294 2 1150 0.0 T 23-04-2016 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 SMART SM00481 6 73 7.2E-33 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 Gene3D G3DSA:1.10.150.280 827 871 2.9E-7 T 23-04-2016 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 Gene3D G3DSA:2.40.50.140 974 1066 3.8E-6 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 Pfam PF02811 PHP domain 7 179 8.7E-56 T 23-04-2016 IPR004013 PHP domain GO:0003824 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 SUPERFAMILY SSF89550 5 270 2.94E-37 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 Gene3D G3DSA:3.20.20.140 5 263 4.0E-51 T 23-04-2016 NIDE_RS11845 9ce6916a33c4b5832c86049c821fd757 1150 Pfam PF14579 Helix-hairpin-helix motif 801 889 1.8E-29 T 23-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS13455 81964f40c9cb8b566d5b7572fc977c24 598 Pfam PF09471 IgA Peptidase M64 333 590 1.1E-33 T 23-04-2016 IPR019026 Peptidase M64, IgA NIDE_RS13455 81964f40c9cb8b566d5b7572fc977c24 598 SUPERFAMILY SSF89372 110 316 2.09E-17 T 23-04-2016 NIDE_RS13455 81964f40c9cb8b566d5b7572fc977c24 598 Gene3D G3DSA:2.120.10.70 108 215 2.0E-6 T 23-04-2016 NIDE_RS13455 81964f40c9cb8b566d5b7572fc977c24 598 Gene3D G3DSA:2.120.10.70 216 332 2.4E-8 T 23-04-2016 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SUPERFAMILY SSF55785 405 531 1.82E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Gene3D G3DSA:3.30.450.20 407 527 1.3E-24 T 23-04-2016 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Gene3D G3DSA:3.30.450.20 153 279 5.5E-25 T 23-04-2016 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Gene3D G3DSA:3.30.450.20 280 406 9.3E-22 T 23-04-2016 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Pfam PF00512 His Kinase A (phospho-acceptor) domain 677 738 3.7E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 PANTHER PTHR24423 619 892 2.3E-126 T 23-04-2016 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 PANTHER PTHR24423 272 491 2.3E-126 T 23-04-2016 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SUPERFAMILY SSF55785 176 291 5.17E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SMART SM00387 783 891 2.1E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SUPERFAMILY SSF55874 730 889 1.83E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Gene3D G3DSA:3.30.450.20 528 675 2.0E-31 T 23-04-2016 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Pfam PF08448 PAS fold 304 407 1.8E-11 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Pfam PF00989 PAS fold 421 530 1.7E-12 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Pfam PF00989 PAS fold 166 279 1.4E-13 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SMART SM00091 420 486 1.1E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SMART SM00091 165 231 2.3E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SMART SM00091 294 361 1.1 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SMART SM00091 545 613 0.32 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SUPERFAMILY SSF47384 665 737 3.34E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SMART SM00086 242 282 22.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SMART SM00086 493 533 99.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SMART SM00086 619 661 4.1E-10 T 23-04-2016 IPR001610 PAC motif NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SMART SM00086 366 408 0.0029 T 23-04-2016 IPR001610 PAC motif NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 166 289 1.8E-20 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 541 668 1.2E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 416 540 8.8E-18 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 290 413 1.4E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 784 890 5.9E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Gene3D G3DSA:3.30.565.10 744 889 1.3E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Gene3D G3DSA:1.10.287.130 676 737 9.6E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SMART SM00388 676 741 1.0E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SUPERFAMILY SSF55785 530 659 3.21E-23 T 23-04-2016 IPR000014 PAS domain NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 PRINTS PR00344 Bacterial sensor protein C-terminal signature 851 869 5.8E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 PRINTS PR00344 Bacterial sensor protein C-terminal signature 838 848 5.8E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 PRINTS PR00344 Bacterial sensor protein C-terminal signature 875 888 5.8E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 PRINTS PR00344 Bacterial sensor protein C-terminal signature 820 834 5.8E-19 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 Pfam PF08447 PAS fold 569 655 1.5E-21 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS17955 aa45790cbccd960479c43bfb7e2c2248 892 SUPERFAMILY SSF55785 279 406 3.44E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS11050 f2e2119b730fe82620df41720dc0ddf4 269 PRINTS PR00364 Disease resistance protein signature 45 60 3.9E-6 T 23-04-2016 NIDE_RS11050 f2e2119b730fe82620df41720dc0ddf4 269 PRINTS PR00364 Disease resistance protein signature 118 132 3.9E-6 T 23-04-2016 NIDE_RS11050 f2e2119b730fe82620df41720dc0ddf4 269 PRINTS PR00364 Disease resistance protein signature 226 240 3.9E-6 T 23-04-2016 NIDE_RS11050 f2e2119b730fe82620df41720dc0ddf4 269 Gene3D G3DSA:3.40.50.300 41 172 7.2E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11050 f2e2119b730fe82620df41720dc0ddf4 269 Pfam PF13401 AAA domain 42 170 4.3E-22 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS11050 f2e2119b730fe82620df41720dc0ddf4 269 SUPERFAMILY SSF52540 6 262 5.35E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11050 f2e2119b730fe82620df41720dc0ddf4 269 PANTHER PTHR35894:SF1 2 263 2.4E-71 T 23-04-2016 NIDE_RS11050 f2e2119b730fe82620df41720dc0ddf4 269 SMART SM00382 42 188 0.0031 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS11050 f2e2119b730fe82620df41720dc0ddf4 269 PANTHER PTHR35894 2 263 2.4E-71 T 23-04-2016 NIDE_RS15670 ca093be127e22c3afa48f4b10ea8fdc2 245 Pfam PF13489 Methyltransferase domain 46 119 4.4E-10 T 23-04-2016 NIDE_RS15670 ca093be127e22c3afa48f4b10ea8fdc2 245 Gene3D G3DSA:3.40.50.150 56 198 1.2E-14 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS15670 ca093be127e22c3afa48f4b10ea8fdc2 245 SUPERFAMILY SSF53335 57 129 2.87E-14 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS10590 a5cf749c25a1fb33688780119d073844 238 Hamap MF_00415 Flagellar L-ring protein [flgH]. 12 236 24.532 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NIDE_RS10590 a5cf749c25a1fb33688780119d073844 238 PANTHER PTHR34933 42 238 9.5E-55 T 23-04-2016 NIDE_RS10590 a5cf749c25a1fb33688780119d073844 238 Pfam PF02107 Flagellar L-ring protein 50 237 2.7E-57 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NIDE_RS10590 a5cf749c25a1fb33688780119d073844 238 PRINTS PR01008 Flagellar L-ring protein signature 215 229 1.1E-21 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NIDE_RS10590 a5cf749c25a1fb33688780119d073844 238 PRINTS PR01008 Flagellar L-ring protein signature 72 84 1.1E-21 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NIDE_RS10590 a5cf749c25a1fb33688780119d073844 238 PRINTS PR01008 Flagellar L-ring protein signature 178 194 1.1E-21 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NIDE_RS10590 a5cf749c25a1fb33688780119d073844 238 PRINTS PR01008 Flagellar L-ring protein signature 199 213 1.1E-21 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NIDE_RS10590 a5cf749c25a1fb33688780119d073844 238 PRINTS PR01008 Flagellar L-ring protein signature 152 167 1.1E-21 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 NIDE_RS07715 5eaa3833243d7610bce31501d1d6a05e 166 SUPERFAMILY SSF55729 6 154 4.05E-27 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS07715 5eaa3833243d7610bce31501d1d6a05e 166 Gene3D G3DSA:3.40.630.30 6 154 8.7E-27 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS07715 5eaa3833243d7610bce31501d1d6a05e 166 PANTHER PTHR23091:SF1 1 152 2.8E-25 T 23-04-2016 NIDE_RS07715 5eaa3833243d7610bce31501d1d6a05e 166 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 16 152 3.6E-31 T 23-04-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 NIDE_RS07715 5eaa3833243d7610bce31501d1d6a05e 166 Pfam PF00583 Acetyltransferase (GNAT) family 62 133 6.3E-13 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS07715 5eaa3833243d7610bce31501d1d6a05e 166 PANTHER PTHR23091 1 152 2.8E-25 T 23-04-2016 NIDE_RS14420 6ad1506c003a3933eb7e66d142d978b8 224 PANTHER PTHR30183 3 221 1.0E-62 T 23-04-2016 NIDE_RS14420 6ad1506c003a3933eb7e66d142d978b8 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 24 217 4.9E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS14420 6ad1506c003a3933eb7e66d142d978b8 224 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 7 215 1.2E-68 T 23-04-2016 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 NIDE_RS14420 6ad1506c003a3933eb7e66d142d978b8 224 Gene3D G3DSA:1.10.3720.10 3 215 8.6E-42 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS14420 6ad1506c003a3933eb7e66d142d978b8 224 SUPERFAMILY SSF161098 3 212 6.02E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS19085 eb19589623f587c799fabcec4c232459 344 SUPERFAMILY SSF50129 1 173 2.59E-49 T 23-04-2016 IPR011032 GroES-like NIDE_RS19085 eb19589623f587c799fabcec4c232459 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 NIDE_RS19085 eb19589623f587c799fabcec4c232459 344 PANTHER PTHR11695:SF285 13 342 3.2E-105 T 23-04-2016 NIDE_RS19085 eb19589623f587c799fabcec4c232459 344 PANTHER PTHR11695 13 342 3.2E-105 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 NIDE_RS19085 eb19589623f587c799fabcec4c232459 344 Pfam PF00107 Zinc-binding dehydrogenase 174 302 2.9E-27 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 NIDE_RS19085 eb19589623f587c799fabcec4c232459 344 Gene3D G3DSA:3.90.180.10 1 171 1.7E-45 T 23-04-2016 IPR011032 GroES-like NIDE_RS19085 eb19589623f587c799fabcec4c232459 344 Gene3D G3DSA:3.40.50.720 172 290 5.5E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19085 eb19589623f587c799fabcec4c232459 344 SMART SM00829 12 342 1.5E-7 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 NIDE_RS19085 eb19589623f587c799fabcec4c232459 344 SUPERFAMILY SSF51735 142 309 1.35E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19085 eb19589623f587c799fabcec4c232459 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 2.1E-31 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 NIDE_RS01295 db6c55cf1344c6e556912b3de92fde8a 200 PANTHER PTHR30446:SF0 3 200 3.5E-103 T 23-04-2016 NIDE_RS01295 db6c55cf1344c6e556912b3de92fde8a 200 Pfam PF02132 RecR protein 41 80 9.2E-16 T 23-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger NIDE_RS01295 db6c55cf1344c6e556912b3de92fde8a 200 ProSitePatterns PS01300 RecR protein signature. 59 80 - T 23-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 NIDE_RS01295 db6c55cf1344c6e556912b3de92fde8a 200 Gene3D G3DSA:3.40.50.140 134 173 7.3E-4 T 23-04-2016 IPR006171 Toprim domain NIDE_RS01295 db6c55cf1344c6e556912b3de92fde8a 200 PANTHER PTHR30446 3 200 3.5E-103 T 23-04-2016 NIDE_RS01295 db6c55cf1344c6e556912b3de92fde8a 200 Pfam PF13662 Toprim domain 82 173 2.3E-22 T 23-04-2016 IPR006171 Toprim domain NIDE_RS01295 db6c55cf1344c6e556912b3de92fde8a 200 SUPERFAMILY SSF111304 7 200 6.93E-71 T 23-04-2016 IPR023627 Recombination protein RecR NIDE_RS01295 db6c55cf1344c6e556912b3de92fde8a 200 Hamap MF_00017 Recombination protein RecR [recR]. 1 200 94.988 T 23-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 NIDE_RS01295 db6c55cf1344c6e556912b3de92fde8a 200 SMART SM00493 82 167 5.5E-15 T 23-04-2016 IPR006171 Toprim domain NIDE_RS01295 db6c55cf1344c6e556912b3de92fde8a 200 TIGRFAM TIGR00615 recR: recombination protein RecR 8 198 5.7E-75 T 23-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 NIDE_RS09310 6ccb24e51e7b68b1697bf9fc3012c053 317 Gene3D G3DSA:3.40.50.300 59 208 4.5E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09310 6ccb24e51e7b68b1697bf9fc3012c053 317 PANTHER PTHR13779:SF30 20 313 1.1E-130 T 23-04-2016 NIDE_RS09310 6ccb24e51e7b68b1697bf9fc3012c053 317 Pfam PF07728 AAA domain (dynein-related subfamily) 61 177 6.4E-17 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 NIDE_RS09310 6ccb24e51e7b68b1697bf9fc3012c053 317 PANTHER PTHR13779 20 313 1.1E-130 T 23-04-2016 NIDE_RS09310 6ccb24e51e7b68b1697bf9fc3012c053 317 SUPERFAMILY SSF52540 31 267 1.31E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 TIGRFAM TIGR00400 mgtE: magnesium transporter 3 442 3.8E-108 T 23-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 Pfam PF01769 Divalent cation transporter 314 435 2.2E-28 T 23-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 SUPERFAMILY SSF54631 129 265 3.16E-34 T 23-04-2016 NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 SUPERFAMILY SSF158791 5 126 4.05E-20 T 23-04-2016 NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 Pfam PF00571 CBS domain 131 186 1.8E-7 T 23-04-2016 IPR000644 CBS domain NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 Pfam PF00571 CBS domain 194 247 5.1E-10 T 23-04-2016 IPR000644 CBS domain NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 Gene3D G3DSA:3.10.580.10 123 254 3.5E-26 T 23-04-2016 NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 SMART SM00116 137 189 4.7 T 23-04-2016 IPR000644 CBS domain NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 SMART SM00116 200 248 3.8E-5 T 23-04-2016 IPR000644 CBS domain NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 Gene3D G3DSA:1.25.60.10 5 122 7.5E-22 T 23-04-2016 NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 Pfam PF03448 MgtE intracellular N domain 25 127 3.7E-18 T 23-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 PANTHER PTHR11911:SF23 96 412 5.5E-40 T 23-04-2016 NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 SUPERFAMILY SSF161093 272 441 5.89E-47 T 23-04-2016 NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 PANTHER PTHR11911 96 412 5.5E-40 T 23-04-2016 NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 Gene3D G3DSA:1.10.357.20 272 442 1.6E-48 T 23-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 NIDE_RS13315 80d9295c248ae3ade33920ebc836dd46 445 SMART SM00924 25 130 5.1E-23 T 23-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 Gene3D G3DSA:3.30.70.870 296 374 5.7E-24 T 23-04-2016 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 SUPERFAMILY SSF54980 297 375 2.34E-17 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 Gene3D G3DSA:2.40.30.10 198 295 7.0E-24 T 23-04-2016 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 SUPERFAMILY SSF52540 8 210 1.32E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 Gene3D G3DSA:3.30.70.240 406 495 5.6E-19 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 Gene3D G3DSA:3.40.50.300 6 197 2.5E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 Pfam PF00009 Elongation factor Tu GTP binding domain 9 186 5.4E-51 T 23-04-2016 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 TIGRFAM TIGR01393 lepA: elongation factor 4 9 600 1.5E-293 T 23-04-2016 IPR006297 Elongation factor 4 GO:0005525 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 PANTHER PTHR23115:SF175 4 378 3.7E-281 T 23-04-2016 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 PANTHER PTHR23115:SF175 402 601 3.7E-281 T 23-04-2016 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 SUPERFAMILY SSF54980 405 499 4.8E-22 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 Pfam PF06421 GTP-binding protein LepA C-terminus 493 599 4.5E-50 T 23-04-2016 IPR013842 GTP-binding protein LepA, C-terminal NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 Pfam PF00679 Elongation factor G C-terminus 405 490 8.7E-19 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 Pfam PF03144 Elongation factor Tu domain 2 210 280 3.6E-8 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 Hamap MF_00071 Elongation factor 4 [lepA]. 1 603 288.779 T 23-04-2016 IPR006297 Elongation factor 4 GO:0005525 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 180 3.7E-20 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 SUPERFAMILY SSF50447 171 293 2.87E-29 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 PRINTS PR00315 GTP-binding elongation factor signature 79 89 7.5E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 PRINTS PR00315 GTP-binding elongation factor signature 11 24 7.5E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.5E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 PRINTS PR00315 GTP-binding elongation factor signature 54 62 7.5E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 PRINTS PR00315 GTP-binding elongation factor signature 95 106 7.5E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 PANTHER PTHR23115 4 378 3.7E-281 T 23-04-2016 NIDE_RS11705 abd76fae10485d23555d17c151de6e74 603 PANTHER PTHR23115 402 601 3.7E-281 T 23-04-2016 NIDE_RS10630 3c0ca9139ba439e61a04ed1e3f0c8989 158 Pfam PF02623 FliW protein 20 138 4.5E-36 T 23-04-2016 IPR003775 Flagellar assembly factor FliW GO:0044780 NIDE_RS10630 3c0ca9139ba439e61a04ed1e3f0c8989 158 Hamap MF_01185 Flagellar assembly factor FliW [fliW]. 17 141 23.302 T 23-04-2016 IPR003775 Flagellar assembly factor FliW GO:0044780 NIDE_RS10630 3c0ca9139ba439e61a04ed1e3f0c8989 158 Gene3D G3DSA:2.30.290.10 1 142 1.4E-46 T 23-04-2016 IPR024046 Flagellar assembly factor FliW domain NIDE_RS10630 3c0ca9139ba439e61a04ed1e3f0c8989 158 SUPERFAMILY SSF141457 1 140 7.59E-40 T 23-04-2016 IPR024046 Flagellar assembly factor FliW domain NIDE_RS10630 3c0ca9139ba439e61a04ed1e3f0c8989 158 PANTHER PTHR39190 2 156 2.8E-36 T 23-04-2016 NIDE_RS14915 afd05d9218d0901e8d817513f1db0d4a 65 Pfam PF05639 Pup-like protein 4 65 3.3E-21 T 23-04-2016 IPR008515 Ubiquitin-like, Pup UniPathway: UPA00997 NIDE_RS14915 afd05d9218d0901e8d817513f1db0d4a 65 TIGRFAM TIGR03687 pupylate_cterm: ubiquitin-like protein Pup 35 65 1.1E-17 T 23-04-2016 IPR008515 Ubiquitin-like, Pup UniPathway: UPA00997 NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 433 461 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 PANTHER PTHR22572:SF115 18 479 1.2E-196 T 23-04-2016 NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 19 482 2.7E-171 T 23-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 Gene3D G3DSA:3.90.550.10 18 274 4.3E-65 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 16 482 40.079 T 23-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 SUPERFAMILY SSF53448 18 282 1.27E-54 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 296 329 2.3E-4 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 424 458 1.8E-8 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 Gene3D G3DSA:2.160.10.10 275 354 1.4E-19 T 23-04-2016 NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 SUPERFAMILY SSF51161 285 470 8.73E-51 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 Gene3D G3DSA:2.160.10.10 355 481 3.1E-32 T 23-04-2016 NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 Pfam PF12804 MobA-like NTP transferase domain 19 151 3.8E-18 T 23-04-2016 IPR025877 MobA-like NTP transferase NIDE_RS13375 4d84375ec92bcc0d92e787e0596749f4 483 PANTHER PTHR22572 18 479 1.2E-196 T 23-04-2016 NIDE_RS13580 88f98d148d88312d6058dade44339db5 352 PANTHER PTHR21225 5 350 8.2E-197 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 NIDE_RS13580 88f98d148d88312d6058dade44339db5 352 Pfam PF00793 DAHP synthetase I family 44 339 8.5E-95 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 NIDE_RS13580 88f98d148d88312d6058dade44339db5 352 PIRSF PIRSF001361 1 351 3.2E-153 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 NIDE_RS13580 88f98d148d88312d6058dade44339db5 352 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 350 6.6E-147 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 NIDE_RS13580 88f98d148d88312d6058dade44339db5 352 Gene3D G3DSA:3.20.20.70 10 350 2.9E-145 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS13580 88f98d148d88312d6058dade44339db5 352 SUPERFAMILY SSF51569 8 348 2.29E-131 T 23-04-2016 NIDE_RS20010 71cf97e2eaa7f80a437b646a605f042c 1089 PANTHER PTHR38344:SF1 721 1088 2.4E-227 T 23-04-2016 NIDE_RS20010 71cf97e2eaa7f80a437b646a605f042c 1089 PANTHER PTHR38344:SF1 2 328 2.4E-227 T 23-04-2016 NIDE_RS20010 71cf97e2eaa7f80a437b646a605f042c 1089 PANTHER PTHR38344:SF1 385 635 2.4E-227 T 23-04-2016 NIDE_RS20010 71cf97e2eaa7f80a437b646a605f042c 1089 PANTHER PTHR38344 721 1088 2.4E-227 T 23-04-2016 NIDE_RS20010 71cf97e2eaa7f80a437b646a605f042c 1089 PANTHER PTHR38344 2 328 2.4E-227 T 23-04-2016 NIDE_RS20010 71cf97e2eaa7f80a437b646a605f042c 1089 PANTHER PTHR38344 385 635 2.4E-227 T 23-04-2016 NIDE_RS20010 71cf97e2eaa7f80a437b646a605f042c 1089 Hamap MF_01871 UPF0753 protein . 19 1074 23.554 T 23-04-2016 IPR018752 Uncharacterised protein family UPF0753 NIDE_RS20010 71cf97e2eaa7f80a437b646a605f042c 1089 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 25 1059 4.7E-279 T 23-04-2016 IPR018752 Uncharacterised protein family UPF0753 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF06594 Haemolysin-type calcium binding protein related domain 1688 1727 4.2E-11 T 23-04-2016 IPR010566 Haemolysin-type calcium binding-related NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF06594 Haemolysin-type calcium binding protein related domain 1837 1874 3.9E-9 T 23-04-2016 IPR010566 Haemolysin-type calcium binding-related NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF06594 Haemolysin-type calcium binding protein related domain 1407 1448 5.1E-7 T 23-04-2016 IPR010566 Haemolysin-type calcium binding-related NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 1504 1525 8.2E-7 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 1076 1094 8.2E-7 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1761 1779 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1901 1919 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1202 1220 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1482 1500 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1062 1080 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1500 1518 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 889 907 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1336 1354 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1345 1363 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1266 1284 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1275 1293 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1103 1121 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 954 972 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1094 1112 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 620 638 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 611 629 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1175 1193 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1121 1139 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1139 1157 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1910 1928 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1019 1037 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1053 1071 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1211 1229 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1348 1364 0.0028 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2074 2090 0.038 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1322 1338 0.25 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1738 1754 43.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 713 727 0.2 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 596 613 0.45 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2288 2305 0.25 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1263 1277 0.37 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1065 1082 0.048 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1544 1555 35.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 696 712 51.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 624 639 0.21 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1143 1159 0.027 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1127 1140 4.9 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1161 1176 0.21 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1051 1064 0.14 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1233 1249 4.7 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1014 1030 0.16 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1031 1043 4.6 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1196 1213 2.5 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 884 900 0.19 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2003 2017 1.9 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2307 2323 0.034 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1278 1295 0.026 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1107 1123 0.71 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1093 1104 29.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1521 1538 0.3 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1905 1921 0.069 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1485 1502 0.017 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2218 2233 2.1 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1178 1195 0.13 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1774 1789 0.4 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1297 1313 4.7 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 949 965 0.84 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1214 1230 62.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1504 1520 0.14 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2147 2162 2.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1756 1772 2.5 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF53474 55 204 1.47E-7 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 880 976 7.85E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 1006 1045 7.85E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 1320 1446 5.49E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 1734 1874 8.76E-17 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 2213 2401 1.96E-25 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 2056 2171 1.2E-17 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 593 775 1.3E-24 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 1465 1603 7.3E-24 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 1886 2031 2.6E-15 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 2278 2404 5.4E-24 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 1056 1194 2.3E-29 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 1195 1316 4.2E-27 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 1321 1447 2.2E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 1621 1728 1.7E-10 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 1735 1874 1.3E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:2.150.10.10 2205 2254 1.2E-17 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 1531 1726 6.02E-12 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 1231 1316 2.09E-14 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 677 800 1.19E-13 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 1882 1978 7.67E-13 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 1465 1582 2.83E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 Gene3D G3DSA:3.40.50.1820 66 201 6.1E-6 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 576 658 5.23E-15 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 2056 2170 2.62E-14 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 2206 2258 2.62E-14 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 PRINTS PR00313 NodO calcium binding signature 594 605 6.2E-9 T 23-04-2016 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 PRINTS PR00313 NodO calcium binding signature 884 892 6.2E-9 T 23-04-2016 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 PRINTS PR00313 NodO calcium binding signature 949 957 6.2E-9 T 23-04-2016 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 PRINTS PR00313 NodO calcium binding signature 1014 1023 6.2E-9 T 23-04-2016 NIDE_RS15805 7421d1eed6bd11f2463b21c59d661b51 2442 SUPERFAMILY SSF51120 1051 1230 4.11E-20 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 PANTHER PTHR24567 24 234 1.1E-39 T 23-04-2016 NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 SMART SM00419 178 226 1.1E-8 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 Gene3D G3DSA:1.10.10.10 156 235 2.9E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 SUPERFAMILY SSF51206 15 155 5.11E-27 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 Gene3D G3DSA:2.60.120.10 22 154 1.7E-22 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 200 215 2.0E-6 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 184 200 2.0E-6 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 Pfam PF00027 Cyclic nucleotide-binding domain 41 126 4.2E-14 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 Pfam PF13545 Crp-like helix-turn-helix domain 159 233 8.7E-16 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 SUPERFAMILY SSF46785 157 234 7.26E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS17920 87fd95e585ecfab25139c5aecbefe994 236 SMART SM00100 21 139 2.2E-12 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain NIDE_RS09335 1a38de784e5c700379b31371f9948985 274 Pfam PF00218 Indole-3-glycerol phosphate synthase 3 264 5.5E-80 T 23-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 NIDE_RS09335 1a38de784e5c700379b31371f9948985 274 PANTHER PTHR22854:SF2 2 265 2.4E-92 T 23-04-2016 NIDE_RS09335 1a38de784e5c700379b31371f9948985 274 Gene3D G3DSA:3.20.20.70 2 270 2.9E-89 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS09335 1a38de784e5c700379b31371f9948985 274 PANTHER PTHR22854 2 265 2.4E-92 T 23-04-2016 NIDE_RS09335 1a38de784e5c700379b31371f9948985 274 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 1 266 33.618 T 23-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 NIDE_RS09335 1a38de784e5c700379b31371f9948985 274 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 54 72 - T 23-04-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 NIDE_RS09335 1a38de784e5c700379b31371f9948985 274 SUPERFAMILY SSF51366 10 266 7.42E-75 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 NIDE_RS04455 d0619bfd70fd9ed171a004d85e77f304 403 Gene3D G3DSA:3.40.50.970 31 236 1.6E-40 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04455 d0619bfd70fd9ed171a004d85e77f304 403 Gene3D G3DSA:3.40.50.920 284 390 9.4E-22 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS04455 d0619bfd70fd9ed171a004d85e77f304 403 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 44 262 3.3E-56 T 23-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 NIDE_RS04455 d0619bfd70fd9ed171a004d85e77f304 403 SUPERFAMILY SSF52518 32 277 7.86E-44 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04455 d0619bfd70fd9ed171a004d85e77f304 403 SUPERFAMILY SSF52922 285 390 1.02E-22 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS04455 d0619bfd70fd9ed171a004d85e77f304 403 PANTHER PTHR32154:SF21 30 396 1.7E-114 T 23-04-2016 NIDE_RS04455 d0619bfd70fd9ed171a004d85e77f304 403 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 287 375 2.1E-17 T 23-04-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II NIDE_RS04455 d0619bfd70fd9ed171a004d85e77f304 403 PANTHER PTHR32154 30 396 1.7E-114 T 23-04-2016 NIDE_RS17570 7a31aa4bc98e09d07adb4c174d35262b 390 PANTHER PTHR23151 3 390 6.0E-95 T 23-04-2016 NIDE_RS17570 7a31aa4bc98e09d07adb4c174d35262b 390 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 172 390 1.0E-61 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 NIDE_RS17570 7a31aa4bc98e09d07adb4c174d35262b 390 Gene3D G3DSA:2.40.50.100 2 89 9.2E-27 T 23-04-2016 NIDE_RS17570 7a31aa4bc98e09d07adb4c174d35262b 390 Pfam PF00364 Biotin-requiring enzyme 3 75 8.4E-17 T 23-04-2016 IPR000089 Biotin/lipoyl attachment NIDE_RS17570 7a31aa4bc98e09d07adb4c174d35262b 390 SUPERFAMILY SSF47005 115 154 8.89E-9 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 NIDE_RS17570 7a31aa4bc98e09d07adb4c174d35262b 390 Pfam PF02817 e3 binding domain 118 151 1.3E-10 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 NIDE_RS17570 7a31aa4bc98e09d07adb4c174d35262b 390 Gene3D G3DSA:3.30.559.10 172 390 8.7E-58 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain NIDE_RS17570 7a31aa4bc98e09d07adb4c174d35262b 390 SUPERFAMILY SSF52777 172 389 6.67E-61 T 23-04-2016 NIDE_RS17570 7a31aa4bc98e09d07adb4c174d35262b 390 SUPERFAMILY SSF51230 2 90 7.98E-24 T 23-04-2016 IPR011053 Single hybrid motif NIDE_RS17570 7a31aa4bc98e09d07adb4c174d35262b 390 Gene3D G3DSA:4.10.320.10 115 157 2.3E-13 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 201 5.5E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 185 5.5E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 201 213 5.5E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 SUPERFAMILY SSF46894 161 227 3.06E-18 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 PANTHER PTHR26402 155 225 2.3E-15 T 23-04-2016 NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 SUPERFAMILY SSF55785 13 124 2.09E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 Gene3D G3DSA:3.30.450.20 6 120 1.6E-17 T 23-04-2016 NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 Pfam PF00196 Bacterial regulatory proteins, luxR family 171 225 4.8E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 SMART SM00421 168 225 6.6E-21 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 Gene3D G3DSA:1.10.10.10 171 226 1.4E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 Pfam PF13426 PAS domain 13 121 1.4E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS21060 35b254d467f22e79f2b2873ec78b0fea 235 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 6 124 1.0E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS02150 ff93fd810c9e437a0a10b96d36479e66 181 PANTHER PTHR10173 4 160 4.5E-84 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 NIDE_RS02150 ff93fd810c9e437a0a10b96d36479e66 181 PANTHER PTHR10173:SF34 4 160 4.5E-84 T 23-04-2016 NIDE_RS02150 ff93fd810c9e437a0a10b96d36479e66 181 SUPERFAMILY SSF55068 4 172 4.19E-75 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 NIDE_RS02150 ff93fd810c9e437a0a10b96d36479e66 181 Pfam PF01625 Peptide methionine sulfoxide reductase 9 160 7.3E-66 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 NIDE_RS02150 ff93fd810c9e437a0a10b96d36479e66 181 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 6 165 37.252 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 NIDE_RS02150 ff93fd810c9e437a0a10b96d36479e66 181 Gene3D G3DSA:3.30.1060.10 3 160 6.2E-74 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 NIDE_RS02150 ff93fd810c9e437a0a10b96d36479e66 181 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 8 160 1.3E-63 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 NIDE_RS03405 336df2c5f1e912717470e49ae2f2cbe4 444 PANTHER PTHR33171:SF3 12 285 1.3E-48 T 23-04-2016 NIDE_RS03405 336df2c5f1e912717470e49ae2f2cbe4 444 PANTHER PTHR33171 12 285 1.3E-48 T 23-04-2016 NIDE_RS03405 336df2c5f1e912717470e49ae2f2cbe4 444 Pfam PF09861 Domain of unknown function (DUF2088) 12 203 9.5E-49 T 23-04-2016 IPR018657 Domain of unknown function DUF2088 NIDE_RS18520 79d4e305748d18ff24814a996f6b77ec 82 Pfam PF06114 Domain of unknown function (DUF955) 24 69 8.6E-8 T 23-04-2016 IPR010359 HTH domain, IrrE-type NIDE_RS13915 8b2571e03e190183b34c83946c0a24a2 329 SUPERFAMILY SSF55347 125 258 2.62E-9 T 23-04-2016 NIDE_RS13915 8b2571e03e190183b34c83946c0a24a2 329 PANTHER PTHR22604 1 307 1.3E-77 T 23-04-2016 NIDE_RS13915 8b2571e03e190183b34c83946c0a24a2 329 Gene3D G3DSA:3.40.50.720 1 129 2.8E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13915 8b2571e03e190183b34c83946c0a24a2 329 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 120 8.9E-30 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 NIDE_RS13915 8b2571e03e190183b34c83946c0a24a2 329 Gene3D G3DSA:3.30.360.10 130 307 7.1E-27 T 23-04-2016 NIDE_RS13915 8b2571e03e190183b34c83946c0a24a2 329 SUPERFAMILY SSF51735 3 152 1.47E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13915 8b2571e03e190183b34c83946c0a24a2 329 PANTHER PTHR22604:SF14 1 307 1.3E-77 T 23-04-2016 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 PANTHER PTHR24423:SF458 24 499 1.4E-67 T 23-04-2016 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 SUPERFAMILY SSF55785 20 133 4.01E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 Gene3D G3DSA:3.30.450.20 133 252 2.9E-13 T 23-04-2016 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 138 2.6E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 144 257 1.0E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 Gene3D G3DSA:3.30.450.20 20 132 1.5E-21 T 23-04-2016 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 SUPERFAMILY SSF55785 132 252 2.09E-15 T 23-04-2016 IPR000014 PAS domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 Gene3D G3DSA:1.10.287.130 265 328 1.3E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 Pfam PF08448 PAS fold 31 135 5.3E-12 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 Pfam PF13426 PAS domain 158 253 1.8E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 443 1.3E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 478 1.3E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 497 1.3E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 497 1.0E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 PANTHER PTHR24423 24 499 1.4E-67 T 23-04-2016 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 SMART SM00388 269 335 6.5E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 SMART SM00091 21 87 0.14 T 23-04-2016 IPR000014 PAS domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 SMART SM00091 147 214 1.7 T 23-04-2016 IPR000014 PAS domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 Gene3D G3DSA:3.30.565.10 336 502 1.1E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 SMART SM00086 214 254 0.031 T 23-04-2016 IPR001610 PAC motif NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 SMART SM00086 93 135 1.4E-7 T 23-04-2016 IPR001610 PAC motif NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 SUPERFAMILY SSF55874 336 502 3.54E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 SMART SM00387 376 500 3.7E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01105 7f8606810f42d4f3fbc28fa3233f059d 532 SUPERFAMILY SSF47384 265 331 1.96E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS02400 60c33195b4d4309571e112105f14ba86 286 PANTHER PTHR31350 58 277 9.7E-43 T 23-04-2016 NIDE_RS02400 60c33195b4d4309571e112105f14ba86 286 Pfam PF13369 Transglutaminase-like superfamily 103 251 1.9E-48 T 23-04-2016 IPR032698 Protein SirB1, N-terminal NIDE_RS02400 60c33195b4d4309571e112105f14ba86 286 PANTHER PTHR31350:SF1 58 277 9.7E-43 T 23-04-2016 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 SUPERFAMILY SSF50249 662 749 1.27E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 SMART SM00316 674 745 1.7E-25 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 PANTHER PTHR10724:SF1 14 770 0.0 T 23-04-2016 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 Pfam PF16921 Tex protein YqgF-like domain 346 476 3.4E-52 T 23-04-2016 IPR032639 Tex protein, YqgF-like domain NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 SMART SM00732 346 449 2.3E-35 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 SUPERFAMILY SSF53098 342 494 1.21E-50 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 Gene3D G3DSA:1.10.150.310 524 655 3.4E-46 T 23-04-2016 IPR023097 Tex RuvX-like domain NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 Gene3D G3DSA:2.40.50.140 658 745 7.3E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 Gene3D G3DSA:1.10.10.650 13 121 1.7E-44 T 23-04-2016 IPR023319 Tex-like protein, HTH domain NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 PANTHER PTHR10724 14 770 0.0 T 23-04-2016 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 SUPERFAMILY SSF47781 495 583 1.7E-27 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 Gene3D G3DSA:3.30.420.140 346 475 5.7E-50 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 SUPERFAMILY SSF158832 14 341 1.19E-107 T 23-04-2016 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 Gene3D G3DSA:1.10.3500.10 476 523 6.8E-95 T 23-04-2016 IPR023323 Tex-like domain NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 Gene3D G3DSA:1.10.3500.10 122 342 6.8E-95 T 23-04-2016 IPR023323 Tex-like domain NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 Pfam PF00575 S1 RNA binding domain 674 745 5.2E-21 T 23-04-2016 IPR003029 S1 domain GO:0003676 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 SUPERFAMILY SSF47781 585 657 1.27E-19 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 Pfam PF09371 Tex-like protein N-terminal domain 21 213 3.3E-69 T 23-04-2016 IPR018974 Tex-like protein, N-terminal NIDE_RS14500 3269a5520c5680bf888250e71827623b 799 Pfam PF12836 Helix-hairpin-helix motif 516 580 2.0E-26 T 23-04-2016 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 8 606 1.9E-216 T 23-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 417 439 7.5E-14 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 88 108 7.5E-14 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 359 381 7.5E-14 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 62 86 7.5E-14 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 69 125 1.8E-22 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 316 328 7.6E-64 T 23-04-2016 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 418 437 7.6E-64 T 23-04-2016 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 86 111 7.6E-64 T 23-04-2016 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 248 274 7.6E-64 T 23-04-2016 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 161 182 7.6E-64 T 23-04-2016 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 226 247 7.6E-64 T 23-04-2016 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 114 134 7.6E-64 T 23-04-2016 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PANTHER PTHR22773:SF50 1 580 8.2E-249 T 23-04-2016 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 Pfam PF00361 Proton-conducting membrane transporter 138 425 3.1E-87 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS01040 70c5dd556ff59c4dc2ced64eb012f9d8 667 PANTHER PTHR22773 1 580 8.2E-249 T 23-04-2016 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 81 4.8E-22 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 Gene3D G3DSA:3.40.50.300 84 360 6.1E-110 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 476 58.377 T 23-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 SUPERFAMILY SSF52540 85 363 1.3E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 349 358 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 PANTHER PTHR15184 1 476 0.0 T 23-04-2016 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 SUPERFAMILY SSF50615 1 83 8.89E-27 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 SMART SM00382 150 342 8.1E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 Gene3D G3DSA:1.10.1140.10 361 477 3.7E-57 T 23-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 PIRSF PIRSF039072 1 480 1.4E-274 T 23-04-2016 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 138 358 1.7E-61 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 SUPERFAMILY SSF47917 361 476 2.09E-54 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 PANTHER PTHR15184:SF8 1 476 0.0 T 23-04-2016 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 Gene3D G3DSA:2.40.10.170 1 83 5.5E-34 T 23-04-2016 NIDE_RS01710 11091503f3b00e872a374f29a6c64bda 480 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 476 5.1E-259 T 23-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 SUPERFAMILY SSF47802 2 81 2.75E-20 T 23-04-2016 IPR010996 DNA polymerase beta-like, N-terminal domain NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 PANTHER PTHR11276 5 320 1.5E-78 T 23-04-2016 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 SMART SM00481 340 419 4.7E-14 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 SMART SM00278 129 148 190.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 SMART SM00278 54 73 0.99 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 SMART SM00278 94 113 23.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 61 78 2.9E-9 T 23-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 256 263 2.9E-9 T 23-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 241 249 2.9E-9 T 23-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 298 315 2.9E-9 T 23-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 PIRSF PIRSF005047 3 574 1.3E-233 T 23-04-2016 IPR022311 Uncharacterised conserved protein UCP005047, YshC KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 Pfam PF14716 Helix-hairpin-helix domain 5 74 6.4E-24 T 23-04-2016 IPR010996 DNA polymerase beta-like, N-terminal domain NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 Pfam PF02811 PHP domain 341 469 5.0E-7 T 23-04-2016 IPR004013 PHP domain GO:0003824 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 Gene3D G3DSA:3.30.460.10 159 257 4.3E-16 T 23-04-2016 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 Gene3D G3DSA:1.10.8.310 4 86 2.5E-22 T 23-04-2016 IPR027420 DNA polymerase beta, N-terminal domain NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 Pfam PF14520 Helix-hairpin-helix domain 95 149 6.5E-8 T 23-04-2016 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 SMART SM00483 2 316 7.5E-41 T 23-04-2016 IPR002054 DNA-directed DNA polymerase X GO:0003677|GO:0003887 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 SUPERFAMILY SSF81301 158 316 1.37E-46 T 23-04-2016 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 Pfam PF14791 DNA polymerase beta thumb 256 316 1.6E-24 T 23-04-2016 IPR029398 DNA polymerase beta, thumb domain NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 Gene3D G3DSA:3.30.210.10 258 316 2.2E-28 T 23-04-2016 IPR029398 DNA polymerase beta, thumb domain NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 Gene3D G3DSA:3.20.20.140 338 566 5.3E-48 T 23-04-2016 NIDE_RS17535 0784c3de16374010a64c6a886d493361 576 SUPERFAMILY SSF89550 339 569 3.53E-49 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 NIDE_RS04515 85747559246e6712876ead158f4e1365 202 Gene3D G3DSA:3.40.50.880 1 201 7.2E-79 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS04515 85747559246e6712876ead158f4e1365 202 Pfam PF00117 Glutamine amidotransferase class-I 4 192 1.4E-20 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 NIDE_RS04515 85747559246e6712876ead158f4e1365 202 PIRSF PIRSF000495 1 202 5.8E-75 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 NIDE_RS04515 85747559246e6712876ead158f4e1365 202 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 199 2.3E-70 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 NIDE_RS04515 85747559246e6712876ead158f4e1365 202 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 201 36.372 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 NIDE_RS04515 85747559246e6712876ead158f4e1365 202 PANTHER PTHR21235:SF1 2 202 8.4E-89 T 23-04-2016 NIDE_RS04515 85747559246e6712876ead158f4e1365 202 PANTHER PTHR21235 2 202 8.4E-89 T 23-04-2016 NIDE_RS04515 85747559246e6712876ead158f4e1365 202 SUPERFAMILY SSF52317 2 201 7.31E-56 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS19765 d6ababe6804893d75b1fb4228fba3741 109 Gene3D G3DSA:2.40.10.220 1 84 3.3E-7 T 23-04-2016 NIDE_RS19765 d6ababe6804893d75b1fb4228fba3741 109 SUPERFAMILY SSF141371 1 85 1.53E-11 T 23-04-2016 NIDE_RS19765 d6ababe6804893d75b1fb4228fba3741 109 Pfam PF07238 PilZ domain 3 93 2.8E-11 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS17135 f89a9645eb900aed28e0a1bd63c18df1 122 Gene3D G3DSA:2.40.10.220 4 105 7.3E-6 T 23-04-2016 NIDE_RS17135 f89a9645eb900aed28e0a1bd63c18df1 122 SUPERFAMILY SSF141371 2 89 1.49E-10 T 23-04-2016 NIDE_RS17135 f89a9645eb900aed28e0a1bd63c18df1 122 Pfam PF07238 PilZ domain 3 94 6.6E-13 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS02550 c2afd9864c46e067be75fa1691503411 770 Gene3D G3DSA:1.25.40.10 33 211 7.4E-16 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02550 c2afd9864c46e067be75fa1691503411 770 Gene3D G3DSA:1.25.40.10 212 433 2.3E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02550 c2afd9864c46e067be75fa1691503411 770 SMART SM00028 195 228 34.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02550 c2afd9864c46e067be75fa1691503411 770 SMART SM00028 155 188 250.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02550 c2afd9864c46e067be75fa1691503411 770 SMART SM00028 35 68 1.8 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02550 c2afd9864c46e067be75fa1691503411 770 SMART SM00028 115 148 46.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02550 c2afd9864c46e067be75fa1691503411 770 SMART SM00028 284 317 19.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02550 c2afd9864c46e067be75fa1691503411 770 SUPERFAMILY SSF48452 35 188 3.75E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02550 c2afd9864c46e067be75fa1691503411 770 Pfam PF12770 CHAT domain 501 766 1.5E-53 T 23-04-2016 IPR024983 CHAT domain NIDE_RS02550 c2afd9864c46e067be75fa1691503411 770 SUPERFAMILY SSF48452 195 359 1.23E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10970 4a8bae7c3fc3a7a4fcdfbb668ce3e6a0 249 SUPERFAMILY SSF53335 8 236 1.44E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS10970 4a8bae7c3fc3a7a4fcdfbb668ce3e6a0 249 Gene3D G3DSA:3.40.50.150 76 216 7.6E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS10970 4a8bae7c3fc3a7a4fcdfbb668ce3e6a0 249 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 78 217 8.1E-25 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- NIDE_RS10970 4a8bae7c3fc3a7a4fcdfbb668ce3e6a0 249 Pfam PF05050 Methyltransferase FkbM domain 80 219 1.8E-14 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- NIDE_RS20725 538ea03728817c0be8a1d8b69eec1ec3 81 PANTHER PTHR32552 7 64 1.6E-12 T 23-04-2016 NIDE_RS20725 538ea03728817c0be8a1d8b69eec1ec3 81 PANTHER PTHR32552:SF26 7 64 1.6E-12 T 23-04-2016 NIDE_RS20725 538ea03728817c0be8a1d8b69eec1ec3 81 Gene3D G3DSA:3.30.420.10 4 64 1.9E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS20725 538ea03728817c0be8a1d8b69eec1ec3 81 Pfam PF13683 Integrase core domain 4 63 2.8E-20 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS20725 538ea03728817c0be8a1d8b69eec1ec3 81 SUPERFAMILY SSF53098 4 71 5.88E-9 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS14630 55d110e40ad0cf4978b0a721fd970684 357 Pfam PF00534 Glycosyl transferases group 1 167 306 3.5E-19 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS14630 55d110e40ad0cf4978b0a721fd970684 357 SUPERFAMILY SSF53756 11 339 3.93E-54 T 23-04-2016 NIDE_RS14630 55d110e40ad0cf4978b0a721fd970684 357 Pfam PF13439 Glycosyltransferase Family 4 18 119 3.7E-14 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS14630 55d110e40ad0cf4978b0a721fd970684 357 Gene3D G3DSA:3.40.50.2000 171 298 2.5E-13 T 23-04-2016 NIDE_RS14630 55d110e40ad0cf4978b0a721fd970684 357 PANTHER PTHR12526 1 339 1.6E-37 T 23-04-2016 NIDE_RS13115 bba92020e14beebef5888b5891c28c26 379 PANTHER PTHR10859:SF50 27 276 1.5E-23 T 23-04-2016 NIDE_RS13115 bba92020e14beebef5888b5891c28c26 379 SUPERFAMILY SSF53448 41 293 4.69E-32 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13115 bba92020e14beebef5888b5891c28c26 379 PANTHER PTHR10859 27 276 1.5E-23 T 23-04-2016 NIDE_RS13115 bba92020e14beebef5888b5891c28c26 379 Pfam PF00535 Glycosyl transferase family 2 47 161 7.1E-20 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS13115 bba92020e14beebef5888b5891c28c26 379 Gene3D G3DSA:3.90.550.10 44 252 1.5E-26 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 192 1.3E-4 T 23-04-2016 NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.1E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.1E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.1E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.1E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.1E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 Pfam PF00106 short chain dehydrogenase 8 198 1.0E-59 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 SUPERFAMILY SSF51735 1 232 3.61E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 PANTHER PTHR24322 155 186 9.4E-58 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 PANTHER PTHR24322 11 139 9.4E-58 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 Gene3D G3DSA:3.40.50.720 1 220 1.6E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 5.2E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.2E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 5.2E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS08745 02c6bb93f08d098c05ac1ecc19ee5476 239 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 92 1.6E-19 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 PANTHER PTHR15184:SF3 1 485 0.0 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 Gene3D G3DSA:2.40.30.20 1 93 4.4E-38 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 SUPERFAMILY SSF52540 96 370 7.71E-101 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 SUPERFAMILY SSF50615 10 94 5.49E-30 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 364 1.3E-75 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 PIRSF PIRSF039088 1 502 2.1E-264 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 Gene3D G3DSA:3.40.50.300 95 371 1.8E-119 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 PANTHER PTHR15184 1 485 0.0 T 23-04-2016 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 355 364 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 Gene3D G3DSA:1.20.150.20 372 499 7.1E-55 T 23-04-2016 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 SUPERFAMILY SSF47917 372 499 8.63E-48 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 371 496 3.4E-49 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 500 6.1E-256 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS01700 200886a38ae60048dde37b0ffe35ad1b 505 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 501 52.066 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 NIDE_RS04015 459829d4cdb706688cebb21443c1b3a8 578 Pfam PF02254 TrkA-N domain 410 525 4.7E-22 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 NIDE_RS04015 459829d4cdb706688cebb21443c1b3a8 578 SUPERFAMILY SSF51735 408 537 1.72E-28 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04015 459829d4cdb706688cebb21443c1b3a8 578 PANTHER PTHR16254 4 538 3.8E-145 T 23-04-2016 NIDE_RS04015 459829d4cdb706688cebb21443c1b3a8 578 Gene3D G3DSA:3.40.50.720 402 537 8.0E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04015 459829d4cdb706688cebb21443c1b3a8 578 Pfam PF00999 Sodium/hydrogen exchanger family 13 374 4.7E-62 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 NIDE_RS10290 2272f1cafc36281870f1ea9c799e674f 988 SUPERFAMILY SSF89550 5 164 1.96E-13 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 NIDE_RS10290 2272f1cafc36281870f1ea9c799e674f 988 Gene3D G3DSA:3.20.20.140 5 74 1.2E-9 T 23-04-2016 NIDE_RS10290 2272f1cafc36281870f1ea9c799e674f 988 Pfam PF02811 PHP domain 7 120 2.3E-20 T 23-04-2016 IPR004013 PHP domain GO:0003824 NIDE_RS10290 2272f1cafc36281870f1ea9c799e674f 988 PANTHER PTHR32294 1 979 6.0E-230 T 23-04-2016 NIDE_RS10290 2272f1cafc36281870f1ea9c799e674f 988 SMART SM00481 6 73 5.0E-14 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 NIDE_RS10290 2272f1cafc36281870f1ea9c799e674f 988 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 840 1.4E-170 T 23-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS10290 2272f1cafc36281870f1ea9c799e674f 988 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 256 687 1.0E-106 T 23-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS10290 2272f1cafc36281870f1ea9c799e674f 988 PANTHER PTHR32294:SF0 1 979 6.0E-230 T 23-04-2016 NIDE_RS10290 2272f1cafc36281870f1ea9c799e674f 988 Pfam PF14579 Helix-hairpin-helix motif 760 840 2.8E-19 T 23-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS09800 52cf46ce1767f7348771df5ad52e805c 118 Gene3D G3DSA:1.10.260.40 33 88 8.4E-11 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS09800 52cf46ce1767f7348771df5ad52e805c 118 SMART SM00530 33 87 7.9E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS09800 52cf46ce1767f7348771df5ad52e805c 118 SUPERFAMILY SSF47413 32 94 5.9E-12 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS09800 52cf46ce1767f7348771df5ad52e805c 118 Pfam PF13744 Helix-turn-helix domain 16 88 5.9E-9 T 23-04-2016 NIDE_RS15935 85c94e804a4c03bee7925c41f70f39fa 119 Pfam PF03795 YCII-related domain 1 115 1.3E-20 T 23-04-2016 IPR005545 YCII-related NIDE_RS15935 85c94e804a4c03bee7925c41f70f39fa 119 SUPERFAMILY SSF54909 1 115 2.17E-31 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS15935 85c94e804a4c03bee7925c41f70f39fa 119 Gene3D G3DSA:3.30.70.1060 1 115 1.5E-36 T 23-04-2016 NIDE_RS15935 85c94e804a4c03bee7925c41f70f39fa 119 PANTHER PTHR35174 2 115 4.7E-39 T 23-04-2016 NIDE_RS15935 85c94e804a4c03bee7925c41f70f39fa 119 PANTHER PTHR35174:SF3 2 115 4.7E-39 T 23-04-2016 NIDE_RS04845 4b9ffae2a39b6d5223279b1ee1e6e204 106 Gene3D G3DSA:1.10.10.10 33 100 1.7E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS04845 4b9ffae2a39b6d5223279b1ee1e6e204 106 Pfam PF00196 Bacterial regulatory proteins, luxR family 40 93 3.9E-20 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04845 4b9ffae2a39b6d5223279b1ee1e6e204 106 PANTHER PTHR26402:SF590 38 95 1.9E-17 T 23-04-2016 NIDE_RS04845 4b9ffae2a39b6d5223279b1ee1e6e204 106 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 71 83 1.3E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04845 4b9ffae2a39b6d5223279b1ee1e6e204 106 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 55 71 1.3E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04845 4b9ffae2a39b6d5223279b1ee1e6e204 106 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 41 55 1.3E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04845 4b9ffae2a39b6d5223279b1ee1e6e204 106 SUPERFAMILY SSF46894 34 101 1.46E-21 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS04845 4b9ffae2a39b6d5223279b1ee1e6e204 106 SMART SM00421 38 95 7.5E-21 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS04845 4b9ffae2a39b6d5223279b1ee1e6e204 106 PANTHER PTHR26402 38 95 1.9E-17 T 23-04-2016 NIDE_RS10285 66b00bd5c7eae9082fb14c346696cab7 296 PANTHER PTHR30348 1 296 1.2E-12 T 23-04-2016 NIDE_RS10285 66b00bd5c7eae9082fb14c346696cab7 296 SUPERFAMILY SSF117396 5 295 4.32E-42 T 23-04-2016 IPR002763 Protein of unknown function DUF72 NIDE_RS10285 66b00bd5c7eae9082fb14c346696cab7 296 Gene3D G3DSA:3.20.20.410 2 295 2.1E-55 T 23-04-2016 IPR002763 Protein of unknown function DUF72 NIDE_RS10285 66b00bd5c7eae9082fb14c346696cab7 296 Pfam PF01904 Protein of unknown function DUF72 52 290 2.2E-34 T 23-04-2016 IPR002763 Protein of unknown function DUF72 NIDE_RS18335 7eed5de53da62e35c7cf92d6dfc3b29d 159 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 3 139 2.0E-32 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type NIDE_RS18335 7eed5de53da62e35c7cf92d6dfc3b29d 159 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 55 73 - T 23-04-2016 IPR030489 Transcription regulator Rrf2-type, conserved site NIDE_RS18335 7eed5de53da62e35c7cf92d6dfc3b29d 159 Gene3D G3DSA:1.10.10.10 3 140 1.4E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS18335 7eed5de53da62e35c7cf92d6dfc3b29d 159 SUPERFAMILY SSF46785 3 141 4.2E-30 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS18335 7eed5de53da62e35c7cf92d6dfc3b29d 159 Pfam PF02082 Transcriptional regulator 2 88 5.5E-21 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type NIDE_RS18335 7eed5de53da62e35c7cf92d6dfc3b29d 159 PANTHER PTHR33221 3 139 4.4E-35 T 23-04-2016 NIDE_RS08880 0a257d6cd0e88a54bd380ef59ed8e613 332 Gene3D G3DSA:3.40.50.1460 43 194 5.3E-22 T 23-04-2016 IPR029030 Caspase-like domain NIDE_RS08880 0a257d6cd0e88a54bd380ef59ed8e613 332 Pfam PF00656 Caspase domain 45 275 2.3E-21 T 23-04-2016 NIDE_RS08880 0a257d6cd0e88a54bd380ef59ed8e613 332 SUPERFAMILY SSF52129 32 240 6.28E-17 T 23-04-2016 IPR029030 Caspase-like domain NIDE_RS14020 cf476808475e7842f1d116c954c0c93a 208 PANTHER PTHR20857 1 206 2.4E-61 T 23-04-2016 NIDE_RS14020 cf476808475e7842f1d116c954c0c93a 208 Gene3D G3DSA:3.20.20.70 2 206 3.9E-61 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS14020 cf476808475e7842f1d116c954c0c93a 208 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 7 199 9.9E-47 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 NIDE_RS14020 cf476808475e7842f1d116c954c0c93a 208 Pfam PF02581 Thiamine monophosphate synthase/TENI 8 187 8.7E-50 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 NIDE_RS14020 cf476808475e7842f1d116c954c0c93a 208 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 5 205 22.61 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 NIDE_RS14020 cf476808475e7842f1d116c954c0c93a 208 PANTHER PTHR20857:SF21 1 206 2.4E-61 T 23-04-2016 NIDE_RS14020 cf476808475e7842f1d116c954c0c93a 208 SUPERFAMILY SSF51391 4 204 1.09E-54 T 23-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 SUPERFAMILY SSF52172 1 140 3.7E-40 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 Pfam PF00072 Response regulator receiver domain 3 114 7.5E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 PANTHER PTHR24423 1 156 1.0E-44 T 23-04-2016 NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 Gene3D G3DSA:3.40.50.2300 1 133 1.2E-39 T 23-04-2016 NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 SMART SM00331 161 378 2.5E-18 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 SMART SM00448 1 114 2.8E-40 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 SUPERFAMILY SSF55874 485 542 7.07E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 SUPERFAMILY SSF55874 434 454 7.07E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 Gene3D G3DSA:3.30.565.10 432 553 3.3E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 189 375 5.4E-40 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS09685 6c120ddc13ddc0e2d22b8e983db80655 563 Pfam PF13581 Histidine kinase-like ATPase domain 434 555 3.4E-11 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05970 fd4a5d54e4dfbf2c5b5381269d5438c1 717 PANTHER PTHR11070:SF3 62 703 1.4E-200 T 23-04-2016 NIDE_RS05970 fd4a5d54e4dfbf2c5b5381269d5438c1 717 Gene3D G3DSA:3.40.50.300 349 456 1.0E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05970 fd4a5d54e4dfbf2c5b5381269d5438c1 717 Gene3D G3DSA:3.40.50.300 605 696 1.0E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05970 fd4a5d54e4dfbf2c5b5381269d5438c1 717 Gene3D G3DSA:1.10.486.10 457 584 1.3E-14 T 23-04-2016 NIDE_RS05970 fd4a5d54e4dfbf2c5b5381269d5438c1 717 Pfam PF00580 UvrD/REP helicase N-terminal domain 72 337 3.9E-60 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 NIDE_RS05970 fd4a5d54e4dfbf2c5b5381269d5438c1 717 PANTHER PTHR11070 62 703 1.4E-200 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 NIDE_RS05970 fd4a5d54e4dfbf2c5b5381269d5438c1 717 Pfam PF13361 UvrD-like helicase C-terminal domain 345 495 4.0E-24 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 NIDE_RS05970 fd4a5d54e4dfbf2c5b5381269d5438c1 717 Pfam PF13361 UvrD-like helicase C-terminal domain 578 667 4.6E-24 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 NIDE_RS05970 fd4a5d54e4dfbf2c5b5381269d5438c1 717 SUPERFAMILY SSF52540 68 694 2.3E-137 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05970 fd4a5d54e4dfbf2c5b5381269d5438c1 717 Gene3D G3DSA:3.40.50.300 71 344 1.1E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04175 a96eebf2194df0b115688350c5961092 281 Pfam PF01040 UbiA prenyltransferase family 16 257 3.7E-56 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 NIDE_RS04175 a96eebf2194df0b115688350c5961092 281 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 2 276 3.0E-86 T 23-04-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 NIDE_RS04175 a96eebf2194df0b115688350c5961092 281 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 55 77 - T 23-04-2016 IPR030470 UbiA prenyltransferase conserved site NIDE_RS04175 a96eebf2194df0b115688350c5961092 281 PANTHER PTHR11048 2 277 2.1E-67 T 23-04-2016 NIDE_RS04175 a96eebf2194df0b115688350c5961092 281 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 1 277 24.408 T 23-04-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 UniPathway: UPA00232 NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 Gene3D G3DSA:3.10.290.10 10 96 5.7E-19 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 Pfam PF01728 FtsJ-like methyltransferase 66 244 1.6E-20 T 23-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 11 242 1.1E-70 T 23-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 SUPERFAMILY SSF55174 4 61 4.86E-11 T 23-04-2016 NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 Gene3D G3DSA:3.40.50.150 97 163 3.1E-6 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 PANTHER PTHR32319 4 251 7.9E-119 T 23-04-2016 NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 PANTHER PTHR32319:SF0 4 251 7.9E-119 T 23-04-2016 NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 SMART SM00363 10 73 1.8E-11 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 PIRSF PIRSF005578 6 251 6.4E-95 T 23-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 Pfam PF01479 S4 domain 10 55 5.5E-10 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS16995 326cb65c50845e31cac62e6d32843cd0 251 SUPERFAMILY SSF53335 65 249 2.74E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12395 31713729cb55c73f4f331cad3f6527ad 374 PANTHER PTHR12526 2 369 5.2E-63 T 23-04-2016 NIDE_RS12395 31713729cb55c73f4f331cad3f6527ad 374 Pfam PF13439 Glycosyltransferase Family 4 12 173 1.3E-23 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS12395 31713729cb55c73f4f331cad3f6527ad 374 Gene3D G3DSA:3.40.50.2000 164 345 5.5E-29 T 23-04-2016 NIDE_RS12395 31713729cb55c73f4f331cad3f6527ad 374 SUPERFAMILY SSF53756 2 359 5.8E-77 T 23-04-2016 NIDE_RS12395 31713729cb55c73f4f331cad3f6527ad 374 Pfam PF13692 Glycosyl transferases group 1 197 333 6.8E-28 T 23-04-2016 NIDE_RS12395 31713729cb55c73f4f331cad3f6527ad 374 Gene3D G3DSA:3.40.50.2000 138 163 1.4E-4 T 23-04-2016 NIDE_RS12395 31713729cb55c73f4f331cad3f6527ad 374 Gene3D G3DSA:3.40.50.2000 18 98 1.4E-4 T 23-04-2016 NIDE_RS03660 91270c05456e387b756e1ebbd264caa2 77 Pfam PF00550 Phosphopantetheine attachment site 6 73 1.4E-17 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS03660 91270c05456e387b756e1ebbd264caa2 77 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 23.311 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 NIDE_RS03660 91270c05456e387b756e1ebbd264caa2 77 SMART SM00823 Phosphopantetheine attachment site 5 63 0.009 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS03660 91270c05456e387b756e1ebbd264caa2 77 PANTHER PTHR20863 4 73 5.4E-30 T 23-04-2016 NIDE_RS03660 91270c05456e387b756e1ebbd264caa2 77 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS03660 91270c05456e387b756e1ebbd264caa2 77 Gene3D G3DSA:1.10.1200.10 4 76 1.2E-35 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS03660 91270c05456e387b756e1ebbd264caa2 77 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 76 1.3E-35 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 NIDE_RS03660 91270c05456e387b756e1ebbd264caa2 77 SUPERFAMILY SSF47336 4 76 4.32E-24 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS00250 7caa729d15e711d48a5925e0f8676681 291 SUPERFAMILY SSF56281 87 277 4.48E-44 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS00250 7caa729d15e711d48a5925e0f8676681 291 PANTHER PTHR11935 61 269 1.4E-61 T 23-04-2016 NIDE_RS00250 7caa729d15e711d48a5925e0f8676681 291 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 18 71 5.3E-15 T 23-04-2016 NIDE_RS00250 7caa729d15e711d48a5925e0f8676681 291 PANTHER PTHR11935:SF104 61 269 1.4E-61 T 23-04-2016 NIDE_RS00250 7caa729d15e711d48a5925e0f8676681 291 SUPERFAMILY SSF54862 20 71 4.79E-5 T 23-04-2016 NIDE_RS00250 7caa729d15e711d48a5925e0f8676681 291 Gene3D G3DSA:3.60.15.10 87 279 1.8E-61 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS00250 7caa729d15e711d48a5925e0f8676681 291 Gene3D G3DSA:3.30.70.20 15 71 2.6E-7 T 23-04-2016 NIDE_RS00250 7caa729d15e711d48a5925e0f8676681 291 SMART SM00849 107 264 2.0E-13 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 Gene3D G3DSA:1.10.10.10 3 144 4.0E-41 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 Hamap MF_00132 Type 2 DNA topoisomerase 6 subunit A [top6A]. 6 367 38.361 T 23-04-2016 IPR004085 DNA topoisomerase VI, subunit A GO:0003677|GO:0003918|GO:0005694|GO:0006265 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01552 DNA topoisomerase VI subunit A (TOP6A) signature 38 58 1.8E-34 T 23-04-2016 IPR004085 DNA topoisomerase VI, subunit A GO:0003677|GO:0003918|GO:0005694|GO:0006265 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01552 DNA topoisomerase VI subunit A (TOP6A) signature 223 243 1.8E-34 T 23-04-2016 IPR004085 DNA topoisomerase VI, subunit A GO:0003677|GO:0003918|GO:0005694|GO:0006265 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01552 DNA topoisomerase VI subunit A (TOP6A) signature 165 183 1.8E-34 T 23-04-2016 IPR004085 DNA topoisomerase VI, subunit A GO:0003677|GO:0003918|GO:0005694|GO:0006265 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01552 DNA topoisomerase VI subunit A (TOP6A) signature 338 361 1.8E-34 T 23-04-2016 IPR004085 DNA topoisomerase VI, subunit A GO:0003677|GO:0003918|GO:0005694|GO:0006265 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01552 DNA topoisomerase VI subunit A (TOP6A) signature 112 129 1.8E-34 T 23-04-2016 IPR004085 DNA topoisomerase VI, subunit A GO:0003677|GO:0003918|GO:0005694|GO:0006265 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01550 DNA topoisomerase VI subunit A family signature 193 210 1.5E-27 T 23-04-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01550 DNA topoisomerase VI subunit A family signature 96 107 1.5E-27 T 23-04-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01550 DNA topoisomerase VI subunit A family signature 118 135 1.5E-27 T 23-04-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01550 DNA topoisomerase VI subunit A family signature 249 265 1.5E-27 T 23-04-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01550 DNA topoisomerase VI subunit A family signature 217 238 1.5E-27 T 23-04-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PRINTS PR01550 DNA topoisomerase VI subunit A family signature 136 151 1.5E-27 T 23-04-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 PANTHER PTHR10848 23 367 3.0E-93 T 23-04-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 Pfam PF04406 Type IIB DNA topoisomerase 72 141 1.4E-17 T 23-04-2016 IPR013049 Spo11/DNA topoisomerase VI, subunit A, N-terminal GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 SUPERFAMILY SSF56726 71 367 1.7E-78 T 23-04-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 NIDE_RS09465 73f814edc73c3235d209f757c5fbcb73 368 Gene3D G3DSA:3.40.1360.10 147 367 1.1E-64 T 23-04-2016 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 SUPERFAMILY SSF142984 243 326 1.28E-25 T 23-04-2016 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 SMART SM00928 331 376 7.3E-23 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 PANTHER PTHR11780:SF10 20 424 2.7E-217 T 23-04-2016 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 333 414 8.5E-29 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 PANTHER PTHR11780 20 424 2.7E-217 T 23-04-2016 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 168 183 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 SUPERFAMILY SSF140490 328 418 1.15E-32 T 23-04-2016 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 17 417 1.1E-185 T 23-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 49 220 6.3E-51 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 344 355 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 SUPERFAMILY SSF142019 20 236 2.35E-87 T 23-04-2016 NIDE_RS02825 358f96455138a5c42da3fb0892ba69f2 435 Pfam PF10531 SLBB domain 244 294 7.1E-15 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 Pfam PF13328 HD domain 31 180 5.5E-50 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 Pfam PF02824 TGS domain 392 451 4.3E-24 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 SMART SM00471 46 158 5.3E-10 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 Pfam PF04607 Region found in RelA / SpoT proteins 240 349 5.2E-36 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 Gene3D G3DSA:3.30.460.10 183 329 1.4E-46 T 23-04-2016 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 31 719 6.6E-239 T 23-04-2016 IPR004811 RelA/SpoT family GO:0015969 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 Pfam PF13291 ACT domain 644 719 3.6E-16 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 SUPERFAMILY SSF109604 10 195 1.88E-72 T 23-04-2016 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 SUPERFAMILY SSF81301 186 396 1.11E-60 T 23-04-2016 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 Gene3D G3DSA:3.10.20.30 392 452 2.1E-24 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 SMART SM00954 240 350 2.8E-64 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 Gene3D G3DSA:3.30.70.260 645 718 2.8E-16 T 23-04-2016 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 PANTHER PTHR21262:SF0 9 722 0.0 T 23-04-2016 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 SUPERFAMILY SSF81271 379 451 5.01E-22 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 SUPERFAMILY SSF55021 644 721 2.14E-11 T 23-04-2016 NIDE_RS14905 a6d04debeeabe54ae01c3cc6bd23e96b 727 PANTHER PTHR21262 9 722 0.0 T 23-04-2016 NIDE_RS01895 9e04e5dc497216f88bf34bab43937519 265 PANTHER PTHR23293:SF6 171 265 2.0E-63 T 23-04-2016 NIDE_RS01895 9e04e5dc497216f88bf34bab43937519 265 PANTHER PTHR23293:SF6 2 151 2.0E-63 T 23-04-2016 NIDE_RS01895 9e04e5dc497216f88bf34bab43937519 265 PANTHER PTHR23293 171 265 2.0E-63 T 23-04-2016 NIDE_RS01895 9e04e5dc497216f88bf34bab43937519 265 PANTHER PTHR23293 2 151 2.0E-63 T 23-04-2016 NIDE_RS01895 9e04e5dc497216f88bf34bab43937519 265 Gene3D G3DSA:3.40.50.620 2 218 2.0E-55 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS01895 9e04e5dc497216f88bf34bab43937519 265 SUPERFAMILY SSF52402 2 202 5.67E-58 T 23-04-2016 NIDE_RS01895 9e04e5dc497216f88bf34bab43937519 265 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 25 221 3.0E-39 T 23-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 NIDE_RS11305 088a6c2cf735f727035178b72983147e 165 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 17 132 5.0E-37 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 NIDE_RS11305 088a6c2cf735f727035178b72983147e 165 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 142 7.0E-61 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 NIDE_RS11305 088a6c2cf735f727035178b72983147e 165 SUPERFAMILY SSF52304 3 145 1.31E-60 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 NIDE_RS11305 088a6c2cf735f727035178b72983147e 165 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 23-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 NIDE_RS11305 088a6c2cf735f727035178b72983147e 165 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 165 70.05 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 NIDE_RS11305 088a6c2cf735f727035178b72983147e 165 Pfam PF01220 Dehydroquinase class II 4 139 1.6E-56 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 NIDE_RS11305 088a6c2cf735f727035178b72983147e 165 Gene3D G3DSA:3.40.50.9100 2 144 3.8E-63 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 NIDE_RS11305 088a6c2cf735f727035178b72983147e 165 PANTHER PTHR21272 1 149 2.5E-87 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 NIDE_RS11305 088a6c2cf735f727035178b72983147e 165 PIRSF PIRSF001399 1 145 1.8E-59 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 NIDE_RS01035 df3537e4b80c51babc320600511ffcfb 519 PANTHER PTHR22773 3 499 2.7E-164 T 23-04-2016 NIDE_RS01035 df3537e4b80c51babc320600511ffcfb 519 Pfam PF00361 Proton-conducting membrane transporter 135 434 2.1E-67 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS01035 df3537e4b80c51babc320600511ffcfb 519 PANTHER PTHR22773:SF40 3 499 2.7E-164 T 23-04-2016 NIDE_RS01035 df3537e4b80c51babc320600511ffcfb 519 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 12 500 5.1E-158 T 23-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 NIDE_RS01035 df3537e4b80c51babc320600511ffcfb 519 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 392 418 1.0E-26 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS01035 df3537e4b80c51babc320600511ffcfb 519 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 171 195 1.0E-26 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS01035 df3537e4b80c51babc320600511ffcfb 519 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 340 359 1.0E-26 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS01035 df3537e4b80c51babc320600511ffcfb 519 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 140 159 1.0E-26 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS01035 df3537e4b80c51babc320600511ffcfb 519 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 252 276 1.0E-26 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 Gene3D G3DSA:2.40.50.140 395 460 1.2E-19 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 PANTHER PTHR11918 6 463 4.4E-173 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 SUPERFAMILY SSF102114 151 385 2.88E-50 T 23-04-2016 NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 Pfam PF04055 Radical SAM superfamily 168 338 4.2E-23 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 PANTHER PTHR11918:SF57 6 463 4.4E-173 T 23-04-2016 NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 18 455 6.2E-123 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 Gene3D G3DSA:3.80.30.20 162 392 4.6E-66 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 166 186 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 Pfam PF01938 TRAM domain 391 458 1.3E-5 T 23-04-2016 IPR002792 TRAM domain NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 SMART SM00729 162 380 3.6E-46 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 17 454 7.1E-146 T 23-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 Pfam PF00919 Uncharacterized protein family UPF0004 19 116 2.1E-26 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 NIDE_RS01390 41847b197789f49d10b28cbb48be7f3c 484 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 16 457 61.127 T 23-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 Pfam PF00155 Aminotransferase class I and II 31 389 4.2E-65 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 PANTHER PTHR11751:SF306 13 396 4.4E-161 T 23-04-2016 NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 PANTHER PTHR11751 13 396 4.4E-161 T 23-04-2016 NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 Gene3D G3DSA:3.40.640.10 44 271 2.4E-74 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 SUPERFAMILY SSF53383 2 395 4.98E-109 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 Gene3D G3DSA:3.90.1150.10 272 396 1.3E-38 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 228 252 1.3E-12 T 23-04-2016 NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 197 220 1.3E-12 T 23-04-2016 NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 161 185 1.3E-12 T 23-04-2016 NIDE_RS11785 224f37e1aacf8adc68afd9e5516a4a29 397 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 114 135 1.3E-12 T 23-04-2016 NIDE_RS19450 3c792cac14ecfd1f304a3a13edd0a632 675 Pfam PF00361 Proton-conducting membrane transporter 133 418 5.4E-52 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS19450 3c792cac14ecfd1f304a3a13edd0a632 675 PANTHER PTHR22773 69 608 7.7E-188 T 23-04-2016 NIDE_RS19450 3c792cac14ecfd1f304a3a13edd0a632 675 PANTHER PTHR22773:SF91 69 608 7.7E-188 T 23-04-2016 NIDE_RS19450 3c792cac14ecfd1f304a3a13edd0a632 675 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 238 262 1.1E-11 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS19450 3c792cac14ecfd1f304a3a13edd0a632 675 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 390 416 1.1E-11 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS19450 3c792cac14ecfd1f304a3a13edd0a632 675 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 167 191 1.1E-11 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS19830 4b9faf03c47432b5f1d6464cd0a1624e 206 PANTHER PTHR11670:SF27 1 199 5.5E-97 T 23-04-2016 NIDE_RS19830 4b9faf03c47432b5f1d6464cd0a1624e 206 Pfam PF00694 Aconitase C-terminal domain 1 122 1.2E-36 T 23-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19830 4b9faf03c47432b5f1d6464cd0a1624e 206 SUPERFAMILY SSF52016 1 195 2.35E-59 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel NIDE_RS19830 4b9faf03c47432b5f1d6464cd0a1624e 206 Gene3D G3DSA:3.20.19.10 1 194 1.3E-49 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel NIDE_RS19830 4b9faf03c47432b5f1d6464cd0a1624e 206 PANTHER PTHR11670 1 199 5.5E-97 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19830 4b9faf03c47432b5f1d6464cd0a1624e 206 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 201 42.659 T 23-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19830 4b9faf03c47432b5f1d6464cd0a1624e 206 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 186 3.2E-81 T 23-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 PANTHER PTHR23083 25 310 4.3E-59 T 23-04-2016 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 Pfam PF00515 Tetratricopeptide repeat 193 225 7.4E-9 T 23-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 SUPERFAMILY SSF51197 375 542 4.12E-7 T 23-04-2016 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 Gene3D G3DSA:1.25.40.10 24 285 3.8E-66 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 Pfam PF13432 Tetratricopeptide repeat 28 91 1.4E-8 T 23-04-2016 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 Pfam PF13432 Tetratricopeptide repeat 130 192 7.7E-15 T 23-04-2016 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 SUPERFAMILY SSF48452 26 270 5.69E-48 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 SMART SM00028 91 124 11.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 SMART SM00028 23 56 0.89 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 SMART SM00028 159 192 5.1E-8 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 SMART SM00028 227 260 62.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 SMART SM00028 57 90 17.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 SMART SM00028 193 226 1.1E-7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20675 32ca9069b65a33e50be228e7fa0fffd6 567 SMART SM00028 125 158 1.5E-6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS18330 acd199a6fc6eaac0066798077791f21a 138 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 50 116 8.9E-10 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NIDE_RS18330 acd199a6fc6eaac0066798077791f21a 138 PANTHER PTHR23426 51 138 8.5E-24 T 23-04-2016 NIDE_RS18330 acd199a6fc6eaac0066798077791f21a 138 Gene3D G3DSA:3.10.20.30 18 134 1.2E-28 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS18330 acd199a6fc6eaac0066798077791f21a 138 SUPERFAMILY SSF54292 21 124 8.13E-22 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NIDE_RS18330 acd199a6fc6eaac0066798077791f21a 138 PRINTS PR00355 Adrenodoxin signature 67 77 1.1E-6 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 NIDE_RS18330 acd199a6fc6eaac0066798077791f21a 138 PRINTS PR00355 Adrenodoxin signature 85 99 1.1E-6 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 NIDE_RS18330 acd199a6fc6eaac0066798077791f21a 138 PRINTS PR00355 Adrenodoxin signature 108 116 1.1E-6 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 NIDE_RS16430 76631e64df3874f8e7069aa12a51b752 360 PANTHER PTHR21716 1 351 2.6E-62 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like NIDE_RS16430 76631e64df3874f8e7069aa12a51b752 360 Pfam PF01594 Domain of unknown function DUF20 12 345 6.2E-44 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like NIDE_RS16430 76631e64df3874f8e7069aa12a51b752 360 PANTHER PTHR21716:SF13 1 351 2.6E-62 T 23-04-2016 NIDE_RS02075 7283d3429a79d4a0abfc0e36d0e395e2 176 PRINTS PR01100 Shikimate kinase family signature 7 22 3.2E-17 T 23-04-2016 NIDE_RS02075 7283d3429a79d4a0abfc0e36d0e395e2 176 PRINTS PR01100 Shikimate kinase family signature 98 115 3.2E-17 T 23-04-2016 NIDE_RS02075 7283d3429a79d4a0abfc0e36d0e395e2 176 PRINTS PR01100 Shikimate kinase family signature 59 67 3.2E-17 T 23-04-2016 NIDE_RS02075 7283d3429a79d4a0abfc0e36d0e395e2 176 PRINTS PR01100 Shikimate kinase family signature 77 86 3.2E-17 T 23-04-2016 NIDE_RS02075 7283d3429a79d4a0abfc0e36d0e395e2 176 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 25.456 T 23-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS02075 7283d3429a79d4a0abfc0e36d0e395e2 176 Gene3D G3DSA:3.40.50.300 4 173 7.4E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02075 7283d3429a79d4a0abfc0e36d0e395e2 176 Pfam PF01202 Shikimate kinase 13 170 8.6E-44 T 23-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS02075 7283d3429a79d4a0abfc0e36d0e395e2 176 PANTHER PTHR21087 5 170 7.1E-49 T 23-04-2016 NIDE_RS02075 7283d3429a79d4a0abfc0e36d0e395e2 176 SUPERFAMILY SSF52540 5 170 2.98E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04295 49d3d14666288bd3a08c52c81f0524f2 1105 SUPERFAMILY SSF48208 713 793 1.06E-12 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS04295 49d3d14666288bd3a08c52c81f0524f2 1105 SUPERFAMILY SSF48208 840 994 1.06E-12 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS04295 49d3d14666288bd3a08c52c81f0524f2 1105 Gene3D G3DSA:1.50.10.10 713 898 5.6E-4 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 NIDE_RS12440 f4cc0d3b61c573a6d3e752186ab0a994 187 PANTHER PTHR30265:SF3 19 182 1.1E-28 T 23-04-2016 NIDE_RS12440 f4cc0d3b61c573a6d3e752186ab0a994 187 PANTHER PTHR30265 19 182 1.1E-28 T 23-04-2016 NIDE_RS12440 f4cc0d3b61c573a6d3e752186ab0a994 187 Gene3D G3DSA:3.30.70.940 24 119 3.5E-9 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 NIDE_RS12440 f4cc0d3b61c573a6d3e752186ab0a994 187 SUPERFAMILY SSF82679 23 119 1.01E-18 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 NIDE_RS12440 f4cc0d3b61c573a6d3e752186ab0a994 187 Pfam PF02357 Transcription termination factor nusG 24 114 1.8E-14 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 PANTHER PTHR24322:SF631 179 210 1.2E-36 T 23-04-2016 NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 PANTHER PTHR24322:SF631 36 163 1.2E-36 T 23-04-2016 NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 166 194 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 217 7.1E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 33 50 7.1E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 169 7.1E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 198 7.1E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 106 117 7.1E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 PANTHER PTHR24322 179 210 1.2E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 PANTHER PTHR24322 36 163 1.2E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 PIRSF PIRSF000126 10 278 2.5E-66 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 Pfam PF00106 short chain dehydrogenase 33 219 1.3E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 SUPERFAMILY SSF51735 28 266 1.49E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS09720 548cd48dd6bc59c9fb5b994bf09f3564 301 Gene3D G3DSA:3.40.50.720 31 260 1.1E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19700 823f3c50a0f1deb9815e3472a54c8a3a 200 SUPERFAMILY SSF52540 1 197 1.27E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19700 823f3c50a0f1deb9815e3472a54c8a3a 200 Pfam PF01926 50S ribosome-binding GTPase 25 148 1.2E-20 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS19700 823f3c50a0f1deb9815e3472a54c8a3a 200 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 11 198 26.923 T 23-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 NIDE_RS19700 823f3c50a0f1deb9815e3472a54c8a3a 200 Gene3D G3DSA:3.40.50.300 5 197 9.1E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19700 823f3c50a0f1deb9815e3472a54c8a3a 200 PANTHER PTHR11649 1 199 3.0E-53 T 23-04-2016 NIDE_RS19700 823f3c50a0f1deb9815e3472a54c8a3a 200 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 6 194 2.1E-62 T 23-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 NIDE_RS08340 409afc147532c4e9812bb7b451488b8f 416 Gene3D G3DSA:3.40.50.1100 193 391 2.0E-37 T 23-04-2016 NIDE_RS08340 409afc147532c4e9812bb7b451488b8f 416 PIRSF PIRSF038945 39 408 2.1E-84 T 23-04-2016 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1|UniPathway: UPA00050 NIDE_RS08340 409afc147532c4e9812bb7b451488b8f 416 TIGRFAM TIGR00260 thrC: threonine synthase 56 383 1.4E-87 T 23-04-2016 IPR004450 Threonine synthase-like NIDE_RS08340 409afc147532c4e9812bb7b451488b8f 416 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 73 376 5.1E-66 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIDE_RS08340 409afc147532c4e9812bb7b451488b8f 416 Gene3D G3DSA:3.40.50.1100 109 192 3.5E-35 T 23-04-2016 NIDE_RS08340 409afc147532c4e9812bb7b451488b8f 416 PANTHER PTHR10314:SF96 23 385 4.2E-186 T 23-04-2016 NIDE_RS08340 409afc147532c4e9812bb7b451488b8f 416 SUPERFAMILY SSF53686 4 394 2.88E-89 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIDE_RS08340 409afc147532c4e9812bb7b451488b8f 416 PANTHER PTHR10314 23 385 4.2E-186 T 23-04-2016 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 PANTHER PTHR11739:SF4 18 391 1.7E-144 T 23-04-2016 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 PRINTS PR00143 Citrate synthase signature 214 242 2.2E-37 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 PRINTS PR00143 Citrate synthase signature 140 153 2.2E-37 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 PRINTS PR00143 Citrate synthase signature 324 340 2.2E-37 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 PRINTS PR00143 Citrate synthase signature 267 287 2.2E-37 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 PRINTS PR00143 Citrate synthase signature 192 207 2.2E-37 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 PRINTS PR00143 Citrate synthase signature 344 358 2.2E-37 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 Pfam PF00285 Citrate synthase, C-terminal domain 22 374 2.7E-118 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 PIRSF PIRSF001369 13 392 2.1E-124 T 23-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 Gene3D G3DSA:1.10.580.10 28 253 3.7E-77 T 23-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 22 391 1.1E-135 T 23-04-2016 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 Gene3D G3DSA:1.10.230.10 254 336 2.1E-30 T 23-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 PANTHER PTHR11739 18 391 1.7E-144 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS14335 caefd3530a852725760dca7208c285ad 392 SUPERFAMILY SSF48256 14 391 1.96E-123 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS08110 235bd38f8881c6e838d85658927c4e6f 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 70 306 3.8E-45 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS08110 235bd38f8881c6e838d85658927c4e6f 390 PANTHER PTHR30097 61 386 9.1E-62 T 23-04-2016 NIDE_RS08110 235bd38f8881c6e838d85658927c4e6f 390 Gene3D G3DSA:2.40.50.100 202 236 2.8E-14 T 23-04-2016 NIDE_RS08110 235bd38f8881c6e838d85658927c4e6f 390 Gene3D G3DSA:2.40.50.100 84 117 2.8E-14 T 23-04-2016 NIDE_RS08110 235bd38f8881c6e838d85658927c4e6f 390 SUPERFAMILY SSF111369 83 311 5.1E-16 T 23-04-2016 NIDE_RS08110 235bd38f8881c6e838d85658927c4e6f 390 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 71 378 4.8E-36 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS08110 235bd38f8881c6e838d85658927c4e6f 390 PANTHER PTHR30097:SF4 61 386 9.1E-62 T 23-04-2016 NIDE_RS05600 75fffb6c4db81437f43a224b6a3ac42d 338 PRINTS PR00075 Fatty acid desaturase family 1 signature 238 259 2.7E-13 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS05600 75fffb6c4db81437f43a224b6a3ac42d 338 PRINTS PR00075 Fatty acid desaturase family 1 signature 142 171 2.7E-13 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS05600 75fffb6c4db81437f43a224b6a3ac42d 338 PRINTS PR00075 Fatty acid desaturase family 1 signature 281 295 2.7E-13 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS05600 75fffb6c4db81437f43a224b6a3ac42d 338 PRINTS PR00075 Fatty acid desaturase family 1 signature 105 125 2.7E-13 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS05600 75fffb6c4db81437f43a224b6a3ac42d 338 Pfam PF00487 Fatty acid desaturase 82 312 2.0E-16 T 23-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 NIDE_RS05600 75fffb6c4db81437f43a224b6a3ac42d 338 PANTHER PTHR11351 35 330 2.3E-106 T 23-04-2016 NIDE_RS05600 75fffb6c4db81437f43a224b6a3ac42d 338 PANTHER PTHR11351:SF34 35 330 2.3E-106 T 23-04-2016 NIDE_RS06110 c49b7a84b29e80f89a978273c89c454f 73 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 15.811 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06110 c49b7a84b29e80f89a978273c89c454f 73 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 23-04-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06110 c49b7a84b29e80f89a978273c89c454f 73 Gene3D G3DSA:1.10.287.310 1 62 7.6E-23 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06110 c49b7a84b29e80f89a978273c89c454f 73 Pfam PF00831 Ribosomal L29 protein 4 59 6.8E-21 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06110 c49b7a84b29e80f89a978273c89c454f 73 SUPERFAMILY SSF46561 1 61 1.31E-18 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06110 c49b7a84b29e80f89a978273c89c454f 73 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 59 4.9E-18 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06110 c49b7a84b29e80f89a978273c89c454f 73 PANTHER PTHR10916 1 64 1.5E-18 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 SUPERFAMILY SSF52317 6 233 3.36E-57 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS06600 12831e945e65611651270746b915dc57 520 SUPERFAMILY SSF54810 400 520 3.01E-52 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 PRINTS PR00096 Glutamine amidotransferase superfamily signature 173 186 9.8E-7 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 9.8E-7 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 9.8E-7 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 PANTHER PTHR11922:SF2 7 517 7.9E-286 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 Gene3D G3DSA:3.40.50.620 219 395 1.6E-57 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS06600 12831e945e65611651270746b915dc57 520 Pfam PF00958 GMP synthase C terminal domain 428 519 2.8E-46 T 23-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 NIDE_RS06600 12831e945e65611651270746b915dc57 520 PANTHER PTHR11922 7 517 7.9E-286 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 Gene3D G3DSA:3.40.50.880 7 218 9.5E-62 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS06600 12831e945e65611651270746b915dc57 520 PRINTS PR00097 Anthranilate synthase component II signature 173 186 3.5E-5 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 PRINTS PR00097 Anthranilate synthase component II signature 81 92 3.5E-5 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 PRINTS PR00097 Anthranilate synthase component II signature 54 63 3.5E-5 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 Gene3D G3DSA:3.30.300.10 396 520 1.0E-53 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 209 520 1.8E-149 T 23-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 NIDE_RS06600 12831e945e65611651270746b915dc57 520 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 520 54.595 T 23-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 NIDE_RS06600 12831e945e65611651270746b915dc57 520 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 6.7E-5 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 6.7E-5 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 6.7E-5 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 Pfam PF00117 Glutamine amidotransferase class-I 12 195 1.6E-37 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 NIDE_RS06600 12831e945e65611651270746b915dc57 520 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 201 3.1E-74 T 23-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 NIDE_RS06600 12831e945e65611651270746b915dc57 520 SUPERFAMILY SSF52402 189 441 2.87E-56 T 23-04-2016 NIDE_RS06600 12831e945e65611651270746b915dc57 520 Pfam PF02540 NAD synthase 211 283 2.7E-6 T 23-04-2016 IPR022310 NAD/GMP synthase NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 SUPERFAMILY SSF48452 63 312 4.99E-41 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 Pfam PF13181 Tetratricopeptide repeat 266 296 1.5E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 Gene3D G3DSA:1.25.40.10 65 309 1.3E-53 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 Pfam PF13432 Tetratricopeptide repeat 205 265 1.7E-11 T 23-04-2016 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 Pfam PF13432 Tetratricopeptide repeat 147 198 1.3E-5 T 23-04-2016 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 SMART SM00028 234 260 160.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 SMART SM00028 132 165 8.0E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 SMART SM00028 64 97 3.7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 SMART SM00028 200 233 0.29 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 SMART SM00028 166 199 0.0092 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 SMART SM00028 264 297 5.4E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 PANTHER PTHR23083 64 298 6.7E-43 T 23-04-2016 NIDE_RS09630 4fc2f9e263aa529a7cf379dedf405c77 344 PANTHER PTHR23083 35 48 6.7E-43 T 23-04-2016 NIDE_RS10255 20e5c52101e2aa93b2038d91c613925d 762 Pfam PF13699 Domain of unknown function (DUF4157) 1 61 1.1E-6 T 23-04-2016 IPR025295 Domain of unknown function DUF4157 NIDE_RS11295 4691d8dfb6b56399d098ba83f6632ebf 419 PANTHER PTHR14359:SF20 7 400 1.6E-171 T 23-04-2016 NIDE_RS11295 4691d8dfb6b56399d098ba83f6632ebf 419 Pfam PF02441 Flavoprotein 12 135 3.6E-31 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 NIDE_RS11295 4691d8dfb6b56399d098ba83f6632ebf 419 Gene3D G3DSA:3.40.50.1950 9 186 2.1E-55 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 NIDE_RS11295 4691d8dfb6b56399d098ba83f6632ebf 419 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 189 372 2.2E-72 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 NIDE_RS11295 4691d8dfb6b56399d098ba83f6632ebf 419 Gene3D G3DSA:3.40.50.10300 187 400 7.3E-83 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 NIDE_RS11295 4691d8dfb6b56399d098ba83f6632ebf 419 SUPERFAMILY SSF102645 187 400 1.7E-74 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 NIDE_RS11295 4691d8dfb6b56399d098ba83f6632ebf 419 SUPERFAMILY SSF52507 8 183 1.13E-53 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 NIDE_RS11295 4691d8dfb6b56399d098ba83f6632ebf 419 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 10 397 8.1E-131 T 23-04-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 NIDE_RS11295 4691d8dfb6b56399d098ba83f6632ebf 419 PANTHER PTHR14359 7 400 1.6E-171 T 23-04-2016 NIDE_RS12260 ee73764b9446f0f12a348d038c48d857 386 Pfam PF01032 FecCD transport family 62 379 2.1E-84 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 NIDE_RS12260 ee73764b9446f0f12a348d038c48d857 386 PANTHER PTHR30472 47 386 1.9E-108 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 NIDE_RS12260 ee73764b9446f0f12a348d038c48d857 386 Gene3D G3DSA:1.10.3470.10 47 383 2.6E-97 T 23-04-2016 IPR029022 ABC transporter, BtuC-like NIDE_RS12260 ee73764b9446f0f12a348d038c48d857 386 PANTHER PTHR30472:SF3 47 386 1.9E-108 T 23-04-2016 NIDE_RS12260 ee73764b9446f0f12a348d038c48d857 386 SUPERFAMILY SSF81345 44 379 8.89E-77 T 23-04-2016 IPR029022 ABC transporter, BtuC-like NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 PANTHER PTHR22769 1 180 1.8E-68 T 23-04-2016 NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 Pfam PF00293 NUDIX domain 41 141 1.1E-13 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 ProSitePatterns PS00893 Nudix box signature. 70 91 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 PANTHER PTHR22769:SF17 1 180 1.8E-68 T 23-04-2016 NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 PRINTS PR00502 NUDIX hydrolase family signature 79 94 5.2E-5 T 23-04-2016 IPR020476 NUDIX hydrolase NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 PRINTS PR00502 NUDIX hydrolase family signature 65 79 5.2E-5 T 23-04-2016 IPR020476 NUDIX hydrolase NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 ProSitePatterns PS01030 RNA polymerases M / 15 Kd subunits signature. 3 29 - T 23-04-2016 IPR019761 DNA-directed RNA polymerase M, 15kDa subunit, conserved site NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 Pfam PF14803 Nudix N-terminal 2 34 6.1E-15 T 23-04-2016 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.-+3.6.1.13|KEGG: 00332+3.6.1.-|KEGG: 00740+3.6.1.18|KEGG: 00790+3.6.1.- NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 SUPERFAMILY SSF55811 2 161 4.6E-39 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 Gene3D G3DSA:2.20.70.10 1 34 8.2E-16 T 23-04-2016 NIDE_RS08675 4c25de6678635de1da7ac2118ad5cf9c 180 Gene3D G3DSA:3.90.79.10 36 171 2.8E-36 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 NIDE_RS19430 d7bb8b1ef1ac5f6b6e0c6e978265c6ad 530 SUPERFAMILY SSF56762 183 529 1.7E-93 T 23-04-2016 IPR029014 NiFe hydrogenase-like NIDE_RS19430 d7bb8b1ef1ac5f6b6e0c6e978265c6ad 530 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 112 133 - T 23-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 NIDE_RS19430 d7bb8b1ef1ac5f6b6e0c6e978265c6ad 530 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 462 525 1.0E-6 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 NIDE_RS19430 d7bb8b1ef1ac5f6b6e0c6e978265c6ad 530 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 296 451 1.7E-32 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 NIDE_RS19430 d7bb8b1ef1ac5f6b6e0c6e978265c6ad 530 Gene3D G3DSA:1.10.645.10 162 521 8.7E-55 T 23-04-2016 IPR029014 NiFe hydrogenase-like NIDE_RS19430 d7bb8b1ef1ac5f6b6e0c6e978265c6ad 530 PANTHER PTHR11993:SF16 121 525 2.9E-147 T 23-04-2016 NIDE_RS19430 d7bb8b1ef1ac5f6b6e0c6e978265c6ad 530 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 32 152 1.3E-25 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 NIDE_RS19430 d7bb8b1ef1ac5f6b6e0c6e978265c6ad 530 SUPERFAMILY SSF143243 8 187 1.44E-43 T 23-04-2016 NIDE_RS19430 d7bb8b1ef1ac5f6b6e0c6e978265c6ad 530 PANTHER PTHR11993 121 525 2.9E-147 T 23-04-2016 NIDE_RS19430 d7bb8b1ef1ac5f6b6e0c6e978265c6ad 530 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 84 148 2.0E-15 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 NIDE_RS08440 0b979958533d8c69501ba29c7e763dd0 185 SUPERFAMILY SSF52402 25 181 1.42E-14 T 23-04-2016 NIDE_RS08440 0b979958533d8c69501ba29c7e763dd0 185 Gene3D G3DSA:3.40.50.620 25 183 1.5E-17 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS08440 0b979958533d8c69501ba29c7e763dd0 185 Pfam PF00582 Universal stress protein family 25 175 7.7E-13 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 187 318 5.8E-44 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 101 591 1.3E-215 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 SUPERFAMILY SSF52540 141 390 2.08E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 Gene3D G3DSA:3.40.50.300 142 327 1.0E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 594 36.054 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 Pfam PF01434 Peptidase family M41 381 589 7.9E-75 T 23-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 SMART SM00382 183 321 5.7E-25 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 PANTHER PTHR23076 10 590 1.1E-288 T 23-04-2016 NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 Gene3D G3DSA:1.10.8.60 328 393 1.6E-24 T 23-04-2016 NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 SUPERFAMILY SSF140990 400 592 4.45E-67 T 23-04-2016 NIDE_RS13405 04fd8eeba643c45c1b847fd566236d0e 594 ProSitePatterns PS00674 AAA-protein family signature. 289 307 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 Pfam PF01145 SPFH domain / Band 7 family 30 209 1.5E-31 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 Pfam PF16200 C-terminal region of band_7 249 309 6.8E-25 T 23-04-2016 IPR032435 Band 7, C-terminal extension NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 SMART SM00244 26 184 1.3E-61 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 PRINTS PR00721 Stomatin signature 160 178 1.8E-29 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 PRINTS PR00721 Stomatin signature 33 55 1.8E-29 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 PRINTS PR00721 Stomatin signature 116 133 1.8E-29 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 PRINTS PR00721 Stomatin signature 81 102 1.8E-29 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 PRINTS PR00721 Stomatin signature 179 200 1.8E-29 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 PRINTS PR00721 Stomatin signature 136 159 1.8E-29 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 SUPERFAMILY SSF117892 57 191 4.71E-41 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 PANTHER PTHR10264 12 315 2.2E-142 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS19650 debf65bb92682506be61c6d10d6d52d2 317 PANTHER PTHR10264:SF27 12 315 2.2E-142 T 23-04-2016 NIDE_RS16585 079b93de4b8b4b5173d0d699e36d83c1 201 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 33 167 6.3E-15 T 23-04-2016 NIDE_RS16585 079b93de4b8b4b5173d0d699e36d83c1 201 Gene3D G3DSA:3.40.50.720 1 194 2.1E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16585 079b93de4b8b4b5173d0d699e36d83c1 201 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.3E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16585 079b93de4b8b4b5173d0d699e36d83c1 201 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 144 1.3E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16585 079b93de4b8b4b5173d0d699e36d83c1 201 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 54 65 1.3E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16585 079b93de4b8b4b5173d0d699e36d83c1 201 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 162 1.3E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16585 079b93de4b8b4b5173d0d699e36d83c1 201 SUPERFAMILY SSF51735 1 194 5.11E-28 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS07435 74f22fd65eafeb385f52719c20d78c34 401 Pfam PF00534 Glycosyl transferases group 1 229 370 6.4E-9 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS07435 74f22fd65eafeb385f52719c20d78c34 401 Gene3D G3DSA:3.40.50.2000 229 359 9.5E-8 T 23-04-2016 NIDE_RS07435 74f22fd65eafeb385f52719c20d78c34 401 SUPERFAMILY SSF53756 81 398 2.11E-18 T 23-04-2016 NIDE_RS19755 228d77df55b779239e3f41bdb8e8ccd0 200 Gene3D G3DSA:1.20.1440.20 18 200 3.7E-61 T 23-04-2016 IPR023353 LemA-like domain NIDE_RS19755 228d77df55b779239e3f41bdb8e8ccd0 200 Pfam PF04011 LemA family 12 200 4.8E-65 T 23-04-2016 IPR007156 LemA NIDE_RS19755 228d77df55b779239e3f41bdb8e8ccd0 200 PANTHER PTHR34478 2 200 1.1E-82 T 23-04-2016 NIDE_RS19755 228d77df55b779239e3f41bdb8e8ccd0 200 SUPERFAMILY SSF140478 29 186 9.42E-52 T 23-04-2016 IPR023353 LemA-like domain NIDE_RS19755 228d77df55b779239e3f41bdb8e8ccd0 200 PANTHER PTHR34478:SF2 2 200 1.1E-82 T 23-04-2016 NIDE_RS08895 e00602c4fc3a4b0b50fa6e20509533c2 335 PANTHER PTHR36194 174 309 5.3E-15 T 23-04-2016 NIDE_RS08895 e00602c4fc3a4b0b50fa6e20509533c2 335 Pfam PF14326 Domain of unknown function (DUF4384) 187 266 5.1E-20 T 23-04-2016 IPR025493 Domain of unknown function DUF4384 NIDE_RS08920 4c42d26065779ad10370e560ad543fe7 912 Pfam PF05860 haemagglutination activity domain 52 150 1.4E-26 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS08920 4c42d26065779ad10370e560ad543fe7 912 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 70 150 4.8E-21 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS08920 4c42d26065779ad10370e560ad543fe7 912 Gene3D G3DSA:2.160.20.10 49 287 6.2E-21 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS08920 4c42d26065779ad10370e560ad543fe7 912 SUPERFAMILY SSF51126 53 379 1.07E-31 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS08920 4c42d26065779ad10370e560ad543fe7 912 SMART SM00912 38 156 3.7E-16 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS19410 007032fe46cbbaf8639e7e39caef8750 316 Gene3D G3DSA:1.10.1040.10 180 307 5.0E-41 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NIDE_RS19410 007032fe46cbbaf8639e7e39caef8750 316 SUPERFAMILY SSF48179 179 303 3.85E-37 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS19410 007032fe46cbbaf8639e7e39caef8750 316 SUPERFAMILY SSF51735 18 179 8.87E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19410 007032fe46cbbaf8639e7e39caef8750 316 PANTHER PTHR22981:SF70 11 308 2.0E-137 T 23-04-2016 NIDE_RS19410 007032fe46cbbaf8639e7e39caef8750 316 Gene3D G3DSA:3.40.50.720 17 179 4.4E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19410 007032fe46cbbaf8639e7e39caef8750 316 PIRSF PIRSF000103 14 308 1.0E-71 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 NIDE_RS19410 007032fe46cbbaf8639e7e39caef8750 316 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 20 176 3.7E-46 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 NIDE_RS19410 007032fe46cbbaf8639e7e39caef8750 316 PANTHER PTHR22981 11 308 2.0E-137 T 23-04-2016 NIDE_RS19410 007032fe46cbbaf8639e7e39caef8750 316 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 181 298 4.7E-33 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 Gene3D G3DSA:3.30.70.670 183 295 4.6E-41 T 23-04-2016 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|UniPathway: UPA00193|UniPathway: UPA00379 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 PANTHER PTHR12234 1 279 2.0E-119 T 23-04-2016 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 SUPERFAMILY SSF55116 3 180 8.76E-64 T 23-04-2016 IPR022384 Formiminotransferase subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|UniPathway: UPA00193|UniPathway: UPA00379 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 SMART SM01222 3 181 3.6E-93 T 23-04-2016 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|UniPathway: UPA00193|UniPathway: UPA00379 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 Gene3D G3DSA:3.30.990.10 3 180 1.4E-69 T 23-04-2016 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|UniPathway: UPA00193|UniPathway: UPA00379 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 Pfam PF02971 Formiminotransferase domain 183 281 3.4E-26 T 23-04-2016 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|UniPathway: UPA00193|UniPathway: UPA00379 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 SUPERFAMILY SSF55116 182 294 1.05E-35 T 23-04-2016 IPR022384 Formiminotransferase subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|UniPathway: UPA00193|UniPathway: UPA00379 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 Pfam PF07837 Formiminotransferase domain, N-terminal subdomain 4 180 4.0E-68 T 23-04-2016 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|UniPathway: UPA00193|UniPathway: UPA00379 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 TIGRFAM TIGR02024 FtcD: glutamate formiminotransferase 2 295 3.7E-112 T 23-04-2016 IPR004227 Formiminotransferase catalytic domain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|UniPathway: UPA00193|UniPathway: UPA00379 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 SMART SM01221 182 296 6.8E-55 T 23-04-2016 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|UniPathway: UPA00193|UniPathway: UPA00379 NIDE_RS19000 b471baed6a2bc19e5d721b7eedf0f4f7 296 PANTHER PTHR12234:SF0 1 279 2.0E-119 T 23-04-2016 NIDE_RS07675 a27304fde586805dd19b521b87262af5 434 SUPERFAMILY SSF88697 47 115 7.04E-14 T 23-04-2016 IPR015947 PUA-like domain NIDE_RS07675 a27304fde586805dd19b521b87262af5 434 Gene3D G3DSA:2.30.130.10 47 114 5.5E-20 T 23-04-2016 IPR015947 PUA-like domain NIDE_RS07675 a27304fde586805dd19b521b87262af5 434 Gene3D G3DSA:3.40.50.150 223 433 3.3E-62 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS07675 a27304fde586805dd19b521b87262af5 434 Gene3D G3DSA:3.30.750.80 115 217 2.2E-32 T 23-04-2016 NIDE_RS07675 a27304fde586805dd19b521b87262af5 434 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 213 398 1.5E-19 T 23-04-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 NIDE_RS07675 a27304fde586805dd19b521b87262af5 434 SMART SM00359 46 130 3.2E-4 T 23-04-2016 IPR002478 PUA domain GO:0003723 NIDE_RS07675 a27304fde586805dd19b521b87262af5 434 PANTHER PTHR11061:SF12 61 434 9.1E-102 T 23-04-2016 NIDE_RS07675 a27304fde586805dd19b521b87262af5 434 PANTHER PTHR11061 61 434 9.1E-102 T 23-04-2016 NIDE_RS07675 a27304fde586805dd19b521b87262af5 434 SUPERFAMILY SSF53335 123 430 1.21E-70 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS16290 2758d2ca7774f63ffeec37f1373695b7 425 SUPERFAMILY SSF142019 8 232 8.63E-80 T 23-04-2016 NIDE_RS16290 2758d2ca7774f63ffeec37f1373695b7 425 Pfam PF10531 SLBB domain 235 280 1.2E-13 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS16290 2758d2ca7774f63ffeec37f1373695b7 425 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 324 406 8.3E-25 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 NIDE_RS16290 2758d2ca7774f63ffeec37f1373695b7 425 PANTHER PTHR11780:SF10 8 415 8.8E-196 T 23-04-2016 NIDE_RS16290 2758d2ca7774f63ffeec37f1373695b7 425 SUPERFAMILY SSF140490 318 415 1.19E-30 T 23-04-2016 NIDE_RS16290 2758d2ca7774f63ffeec37f1373695b7 425 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 39 211 1.5E-47 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain NIDE_RS16290 2758d2ca7774f63ffeec37f1373695b7 425 SMART SM00928 321 366 2.2E-17 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 NIDE_RS16290 2758d2ca7774f63ffeec37f1373695b7 425 SUPERFAMILY SSF142984 234 316 4.18E-25 T 23-04-2016 NIDE_RS16290 2758d2ca7774f63ffeec37f1373695b7 425 PANTHER PTHR11780 8 415 8.8E-196 T 23-04-2016 NIDE_RS16290 2758d2ca7774f63ffeec37f1373695b7 425 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 334 345 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 Pfam PF03958 Bacterial type II/III secretion system short domain 255 312 2.6E-7 T 23-04-2016 IPR005644 NolW-like NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 SMART SM00028 110 143 10.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 SMART SM00028 13 46 170.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 SMART SM00028 61 94 0.17 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 Gene3D G3DSA:2.60.40.680 638 735 1.5E-4 T 23-04-2016 IPR002102 Cellulosome anchoring protein, cohesin domain GO:0000272|GO:0030246 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 PANTHER PTHR30332 56 581 2.3E-68 T 23-04-2016 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 PANTHER PTHR30332:SF7 56 581 2.3E-68 T 23-04-2016 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 SUPERFAMILY SSF49384 635 741 8.67E-7 T 23-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 Pfam PF00263 Bacterial type II and III secretion system protein 389 563 1.1E-35 T 23-04-2016 IPR004846 Type II/III secretion system GO:0009306 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 Gene3D G3DSA:1.25.40.10 18 182 5.3E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 SUPERFAMILY SSF48452 18 155 6.24E-16 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 PRINTS PR00811 Bacterial general secretion pathway protein D signature 383 407 2.1E-5 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 PRINTS PR00811 Bacterial general secretion pathway protein D signature 528 546 2.1E-5 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS12990 04a61b21bc2e5e5f6d1b1d4deab8eff8 765 PRINTS PR00811 Bacterial general secretion pathway protein D signature 315 325 2.1E-5 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS00645 4470f9c98ee99201867606caa85b5fc5 805 PANTHER PTHR30195 71 589 5.8E-52 T 23-04-2016 NIDE_RS00645 4470f9c98ee99201867606caa85b5fc5 805 PANTHER PTHR30195:SF3 71 589 5.8E-52 T 23-04-2016 NIDE_RS00645 4470f9c98ee99201867606caa85b5fc5 805 Pfam PF00271 Helicase conserved C-terminal domain 450 565 1.2E-6 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS00645 4470f9c98ee99201867606caa85b5fc5 805 Gene3D G3DSA:3.40.50.300 169 342 1.8E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00645 4470f9c98ee99201867606caa85b5fc5 805 Gene3D G3DSA:3.40.50.300 450 568 9.8E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00645 4470f9c98ee99201867606caa85b5fc5 805 SUPERFAMILY SSF52540 422 568 4.24E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00645 4470f9c98ee99201867606caa85b5fc5 805 SUPERFAMILY SSF52540 193 340 4.24E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00645 4470f9c98ee99201867606caa85b5fc5 805 SMART SM00487 165 368 3.5E-18 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS00645 4470f9c98ee99201867606caa85b5fc5 805 Pfam PF04851 Type III restriction enzyme, res subunit 169 338 1.7E-28 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 NIDE_RS03525 723fa75b7e6d7896bd44d7cccfa667bb 247 SUPERFAMILY SSF64438 14 241 4.27E-65 T 23-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic NIDE_RS03525 723fa75b7e6d7896bd44d7cccfa667bb 247 Gene3D G3DSA:3.60.140.10 49 241 3.9E-65 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase NIDE_RS03525 723fa75b7e6d7896bd44d7cccfa667bb 247 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 46 238 7.6E-55 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase NIDE_RS03525 723fa75b7e6d7896bd44d7cccfa667bb 247 PANTHER PTHR30616 51 243 1.1E-68 T 23-04-2016 NIDE_RS03525 723fa75b7e6d7896bd44d7cccfa667bb 247 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 50 239 1.9E-49 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 Pfam PF00483 Nucleotidyl transferase 9 296 1.8E-58 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 7 479 5.1E-165 T 23-04-2016 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 PANTHER PTHR12526:SF387 362 482 3.6E-85 T 23-04-2016 NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 PANTHER PTHR12526:SF387 159 299 3.6E-85 T 23-04-2016 NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 SUPERFAMILY SSF51182 196 480 1.84E-69 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 PANTHER PTHR12526 362 482 3.6E-85 T 23-04-2016 NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 PANTHER PTHR12526 159 299 3.6E-85 T 23-04-2016 NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 Pfam PF01050 Mannose-6-phosphate isomerase 325 475 1.1E-57 T 23-04-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 SUPERFAMILY SSF53448 7 291 5.63E-66 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 Gene3D G3DSA:3.90.550.10 4 281 4.6E-93 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13655 9ca551c11a9826236e7a21a74a787896 484 Gene3D G3DSA:2.60.120.10 368 479 6.9E-39 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS18775 d31d4c9b878466e3784f07741dd2c0bb 398 SUPERFAMILY SSF53383 8 391 2.53E-108 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS18775 d31d4c9b878466e3784f07741dd2c0bb 398 Gene3D G3DSA:3.90.1150.10 260 391 4.7E-42 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS18775 d31d4c9b878466e3784f07741dd2c0bb 398 Gene3D G3DSA:3.40.640.10 47 259 1.9E-61 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS18775 d31d4c9b878466e3784f07741dd2c0bb 398 PANTHER PTHR11751:SF302 15 398 6.0E-226 T 23-04-2016 NIDE_RS18775 d31d4c9b878466e3784f07741dd2c0bb 398 Pfam PF00155 Aminotransferase class I and II 34 375 4.8E-62 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NIDE_RS18775 d31d4c9b878466e3784f07741dd2c0bb 398 PANTHER PTHR11751 15 398 6.0E-226 T 23-04-2016 NIDE_RS06715 567dee4fa9aaf8a9d652fcd7cfc86d9e 226 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 59 68 - T 23-04-2016 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 NIDE_RS06715 567dee4fa9aaf8a9d652fcd7cfc86d9e 226 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 6 222 36.539 T 23-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 NIDE_RS06715 567dee4fa9aaf8a9d652fcd7cfc86d9e 226 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 8 214 4.9E-73 T 23-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 NIDE_RS06715 567dee4fa9aaf8a9d652fcd7cfc86d9e 226 SMART SM00987 51 211 2.5E-32 T 23-04-2016 NIDE_RS06715 567dee4fa9aaf8a9d652fcd7cfc86d9e 226 SMART SM00986 51 211 2.5E-32 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS06715 567dee4fa9aaf8a9d652fcd7cfc86d9e 226 Pfam PF03167 Uracil DNA glycosylase superfamily 54 208 7.9E-19 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS06715 567dee4fa9aaf8a9d652fcd7cfc86d9e 226 PANTHER PTHR11264 9 225 8.2E-108 T 23-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 NIDE_RS06715 567dee4fa9aaf8a9d652fcd7cfc86d9e 226 Gene3D G3DSA:3.40.470.10 6 223 1.3E-87 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS06715 567dee4fa9aaf8a9d652fcd7cfc86d9e 226 SUPERFAMILY SSF52141 5 223 3.71E-78 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS09625 da22574fab10cffe0f826adef3c5cba2 686 Pfam PF00593 TonB dependent receptor 458 684 7.0E-10 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS09625 da22574fab10cffe0f826adef3c5cba2 686 PANTHER PTHR32552 1 686 7.9E-82 T 23-04-2016 NIDE_RS09625 da22574fab10cffe0f826adef3c5cba2 686 SUPERFAMILY SSF56935 31 686 2.54E-80 T 23-04-2016 NIDE_RS09625 da22574fab10cffe0f826adef3c5cba2 686 Gene3D G3DSA:2.40.170.20 163 686 6.7E-49 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS09625 da22574fab10cffe0f826adef3c5cba2 686 Gene3D G3DSA:2.170.130.10 50 162 6.7E-19 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS09625 da22574fab10cffe0f826adef3c5cba2 686 PANTHER PTHR32552:SF36 1 686 7.9E-82 T 23-04-2016 NIDE_RS09625 da22574fab10cffe0f826adef3c5cba2 686 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 160 6.7E-15 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS15140 53e1314b683d3cd08382448c9644712b 604 PANTHER PTHR11785:SF125 506 521 2.2E-162 T 23-04-2016 NIDE_RS15140 53e1314b683d3cd08382448c9644712b 604 PANTHER PTHR11785:SF125 15 474 2.2E-162 T 23-04-2016 NIDE_RS15140 53e1314b683d3cd08382448c9644712b 604 PANTHER PTHR11785 506 521 2.2E-162 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 NIDE_RS15140 53e1314b683d3cd08382448c9644712b 604 PANTHER PTHR11785 15 474 2.2E-162 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 NIDE_RS15140 53e1314b683d3cd08382448c9644712b 604 Pfam PF13520 Amino acid permease 27 423 8.8E-26 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 NIDE_RS15940 eb60626003f647be86ffa250803a4c0b 118 Gene3D G3DSA:3.30.70.1060 1 113 1.8E-39 T 23-04-2016 NIDE_RS15940 eb60626003f647be86ffa250803a4c0b 118 Pfam PF03795 YCII-related domain 1 114 7.6E-25 T 23-04-2016 IPR005545 YCII-related NIDE_RS15940 eb60626003f647be86ffa250803a4c0b 118 SUPERFAMILY SSF54909 1 114 7.37E-36 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS15940 eb60626003f647be86ffa250803a4c0b 118 PANTHER PTHR35174:SF3 2 114 2.1E-45 T 23-04-2016 NIDE_RS15940 eb60626003f647be86ffa250803a4c0b 118 PANTHER PTHR35174 2 114 2.1E-45 T 23-04-2016 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 PRINTS PR00145 Argininosuccinate lyase family signature 133 155 5.0E-8 T 23-04-2016 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 5.0E-8 T 23-04-2016 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 5.0E-8 T 23-04-2016 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 Hamap MF_00743 Fumarate hydratase class II [fumC]. 5 462 79.147 T 23-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 SUPERFAMILY SSF48557 5 460 4.42E-148 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 Gene3D G3DSA:1.10.40.30 409 463 1.5E-19 T 23-04-2016 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 Gene3D G3DSA:1.20.200.10 139 403 2.3E-100 T 23-04-2016 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 5.3E-35 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 5.3E-35 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 5.3E-35 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 5.3E-35 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 PANTHER PTHR11444 1 461 1.0E-222 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 Gene3D G3DSA:1.10.275.10 4 138 2.2E-58 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 PANTHER PTHR11444:SF1 1 461 1.0E-222 T 23-04-2016 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 Pfam PF10415 Fumarase C C-terminus 409 461 2.7E-19 T 23-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS11245 1eca920c18fc7897cb6913eaa691b045 471 Pfam PF00206 Lyase 13 342 3.3E-104 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal NIDE_RS17200 72c6651e6f1e8214ae67b6863dc5634d 283 Gene3D G3DSA:3.40.50.150 116 246 2.2E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS17200 72c6651e6f1e8214ae67b6863dc5634d 283 SUPERFAMILY SSF53335 109 274 1.25E-10 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02410 292c2cdf5e008549a81d2d4d6c075ee2 152 SUPERFAMILY SSF46785 9 147 3.76E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02410 292c2cdf5e008549a81d2d4d6c075ee2 152 Pfam PF01047 MarR family 38 95 4.1E-15 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS02410 292c2cdf5e008549a81d2d4d6c075ee2 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 5.0E-15 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS02410 292c2cdf5e008549a81d2d4d6c075ee2 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 5.0E-15 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS02410 292c2cdf5e008549a81d2d4d6c075ee2 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 5.0E-15 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS02410 292c2cdf5e008549a81d2d4d6c075ee2 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 5.0E-15 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS02410 292c2cdf5e008549a81d2d4d6c075ee2 152 ProSitePatterns PS01117 MarR-type HTH domain signature. 70 104 - T 23-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site NIDE_RS02410 292c2cdf5e008549a81d2d4d6c075ee2 152 SMART SM00347 31 131 1.2E-21 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 NIDE_RS02410 292c2cdf5e008549a81d2d4d6c075ee2 152 Gene3D G3DSA:1.10.10.10 7 149 2.9E-36 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02410 292c2cdf5e008549a81d2d4d6c075ee2 152 PANTHER PTHR33164 18 148 1.8E-26 T 23-04-2016 NIDE_RS19725 39ae93b899d1c6d81856dd2e1deade97 156 PANTHER PTHR10472 2 147 3.5E-71 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 NIDE_RS19725 39ae93b899d1c6d81856dd2e1deade97 156 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 35.727 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 NIDE_RS19725 39ae93b899d1c6d81856dd2e1deade97 156 SUPERFAMILY SSF69500 1 145 9.68E-55 T 23-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain NIDE_RS19725 39ae93b899d1c6d81856dd2e1deade97 156 Gene3D G3DSA:3.50.80.10 1 145 6.4E-56 T 23-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain NIDE_RS19725 39ae93b899d1c6d81856dd2e1deade97 156 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 5.1E-54 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 NIDE_RS19725 39ae93b899d1c6d81856dd2e1deade97 156 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 2.7E-51 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 SUPERFAMILY SSF52402 154 284 2.43E-27 T 23-04-2016 NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 Gene3D G3DSA:3.40.50.620 2 148 4.1E-24 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 PANTHER PTHR31964 228 284 2.3E-29 T 23-04-2016 NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 PANTHER PTHR31964 1 90 2.3E-29 T 23-04-2016 NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 SUPERFAMILY SSF52402 1 150 8.37E-25 T 23-04-2016 NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 Pfam PF00582 Universal stress protein family 2 146 2.8E-18 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 Pfam PF00582 Universal stress protein family 154 284 2.6E-26 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 Gene3D G3DSA:3.40.50.620 149 284 9.3E-31 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 PANTHER PTHR31964:SF26 228 284 2.3E-29 T 23-04-2016 NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 PANTHER PTHR31964:SF26 1 90 2.3E-29 T 23-04-2016 NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 PRINTS PR01438 Universal stress protein signature 152 170 4.9E-18 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 PRINTS PR01438 Universal stress protein signature 244 256 4.9E-18 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17165 6716015c6a83c7689f331e6ee3f5d7b1 284 PRINTS PR01438 Universal stress protein signature 262 284 4.9E-18 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS04680 a64fb527402687d365609896aab12fbc 623 SUPERFAMILY SSF56519 53 245 1.44E-48 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 NIDE_RS04680 a64fb527402687d365609896aab12fbc 623 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 16 599 3.6E-219 T 23-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 NIDE_RS04680 a64fb527402687d365609896aab12fbc 623 Gene3D G3DSA:3.90.1310.10 126 244 3.3E-31 T 23-04-2016 NIDE_RS04680 a64fb527402687d365609896aab12fbc 623 Gene3D G3DSA:3.40.710.10 245 601 1.3E-119 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS04680 a64fb527402687d365609896aab12fbc 623 PANTHER PTHR30627 4 599 2.9E-210 T 23-04-2016 NIDE_RS04680 a64fb527402687d365609896aab12fbc 623 PANTHER PTHR30627:SF2 4 599 2.9E-210 T 23-04-2016 NIDE_RS04680 a64fb527402687d365609896aab12fbc 623 SUPERFAMILY SSF56601 246 602 5.09E-108 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS04680 a64fb527402687d365609896aab12fbc 623 Pfam PF00905 Penicillin binding protein transpeptidase domain 263 595 5.3E-82 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 NIDE_RS04680 a64fb527402687d365609896aab12fbc 623 Pfam PF03717 Penicillin-binding Protein dimerisation domain 62 227 3.4E-41 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 NIDE_RS07735 04d25d78d7d50c4b475c428f39aabe53 169 PANTHER PTHR11071 18 161 3.6E-49 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 NIDE_RS07735 04d25d78d7d50c4b475c428f39aabe53 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 127 1.0E-17 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS07735 04d25d78d7d50c4b475c428f39aabe53 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 1.0E-17 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS07735 04d25d78d7d50c4b475c428f39aabe53 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 1.0E-17 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS07735 04d25d78d7d50c4b475c428f39aabe53 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 128 143 1.0E-17 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS07735 04d25d78d7d50c4b475c428f39aabe53 169 SUPERFAMILY SSF50891 7 163 3.36E-53 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS07735 04d25d78d7d50c4b475c428f39aabe53 169 Gene3D G3DSA:2.40.100.10 5 164 3.8E-53 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS07735 04d25d78d7d50c4b475c428f39aabe53 169 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 21 164 7.7E-51 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS07735 04d25d78d7d50c4b475c428f39aabe53 169 PIRSF PIRSF001467 1 168 7.0E-41 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 NIDE_RS07735 04d25d78d7d50c4b475c428f39aabe53 169 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 - T 23-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 PANTHER PTHR24423 239 619 3.8E-86 T 23-04-2016 NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 PANTHER PTHR24423:SF458 239 619 3.8E-86 T 23-04-2016 NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 SMART SM00448 503 614 1.1E-6 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 428 3.0E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 480 3.0E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 442 3.0E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 461 3.0E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 SMART SM00387 362 483 2.9E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 Pfam PF00072 Response regulator receiver domain 505 613 5.2E-10 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 Gene3D G3DSA:3.40.50.2300 502 619 1.3E-19 T 23-04-2016 NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 481 1.9E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 SUPERFAMILY SSF52172 504 619 1.99E-17 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 SUPERFAMILY SSF55874 321 482 4.19E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS18060 86399b1ddf5580b581c5d279b47c1a58 620 Gene3D G3DSA:3.30.565.10 325 481 4.8E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS04935 d50f308510d8b16fa8e65d46e6af8da2 109 SMART SM00507 13 68 2.7E-6 T 23-04-2016 IPR003615 HNH nuclease NIDE_RS04935 d50f308510d8b16fa8e65d46e6af8da2 109 Pfam PF01844 HNH endonuclease 25 73 4.7E-12 T 23-04-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 NIDE_RS11905 3bda940c86a95d6a1f00c6328d54983d 296 SMART SM00363 42 100 7.3E-7 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS11905 3bda940c86a95d6a1f00c6328d54983d 296 Pfam PF01479 S4 domain 44 78 1.2E-9 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS11905 3bda940c86a95d6a1f00c6328d54983d 296 Pfam PF00849 RNA pseudouridylate synthase 103 234 1.2E-18 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS11905 3bda940c86a95d6a1f00c6328d54983d 296 Gene3D G3DSA:3.10.290.10 44 104 7.6E-14 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS11905 3bda940c86a95d6a1f00c6328d54983d 296 SUPERFAMILY SSF55174 38 107 3.34E-10 T 23-04-2016 NIDE_RS11905 3bda940c86a95d6a1f00c6328d54983d 296 SUPERFAMILY SSF55120 87 269 1.34E-38 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS11905 3bda940c86a95d6a1f00c6328d54983d 296 PANTHER PTHR21600:SF2 44 267 1.1E-66 T 23-04-2016 NIDE_RS11905 3bda940c86a95d6a1f00c6328d54983d 296 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 107 264 7.3E-45 T 23-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 NIDE_RS11905 3bda940c86a95d6a1f00c6328d54983d 296 PANTHER PTHR21600 44 267 1.1E-66 T 23-04-2016 NIDE_RS11905 3bda940c86a95d6a1f00c6328d54983d 296 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 140 154 - T 23-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 NIDE_RS16460 f0e4cc4723d440feaec060475aa4ace6 487 PANTHER PTHR11819 1 463 1.6E-95 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 NIDE_RS16460 f0e4cc4723d440feaec060475aa4ace6 487 Pfam PF00474 Sodium:solute symporter family 30 426 8.2E-36 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 NIDE_RS16460 f0e4cc4723d440feaec060475aa4ace6 487 PANTHER PTHR11819:SF141 1 463 1.6E-95 T 23-04-2016 NIDE_RS05790 9f07903e1b064ab67604564bbf610c4b 130 SUPERFAMILY SSF46626 14 125 3.95E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS05790 9f07903e1b064ab67604564bbf610c4b 130 Gene3D G3DSA:1.10.760.10 4 125 5.2E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS05790 9f07903e1b064ab67604564bbf610c4b 130 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 40 120 6.4E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS04425 3ede4991ef479ce9291d6cb0d8fbf846 212 PANTHER PTHR22789 5 197 1.3E-19 T 23-04-2016 NIDE_RS04425 3ede4991ef479ce9291d6cb0d8fbf846 212 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 7 196 1.9E-25 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal NIDE_RS04425 3ede4991ef479ce9291d6cb0d8fbf846 212 Gene3D G3DSA:3.40.225.10 4 202 2.1E-33 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal NIDE_RS04425 3ede4991ef479ce9291d6cb0d8fbf846 212 SUPERFAMILY SSF53639 7 199 1.43E-27 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal NIDE_RS04425 3ede4991ef479ce9291d6cb0d8fbf846 212 SMART SM01007 3 197 9.4E-18 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal NIDE_RS01890 5ffd94a7c55ef0a6911315e2202c7144 355 PANTHER PTHR11922 98 340 1.1E-32 T 23-04-2016 NIDE_RS01890 5ffd94a7c55ef0a6911315e2202c7144 355 SUPERFAMILY SSF52418 79 343 4.71E-62 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 NIDE_RS01890 5ffd94a7c55ef0a6911315e2202c7144 355 Pfam PF02885 Glycosyl transferase family, helical bundle domain 3 66 3.4E-16 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain NIDE_RS01890 5ffd94a7c55ef0a6911315e2202c7144 355 PANTHER PTHR11922:SF5 98 340 1.1E-32 T 23-04-2016 NIDE_RS01890 5ffd94a7c55ef0a6911315e2202c7144 355 Gene3D G3DSA:3.40.1030.10 80 340 2.6E-62 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 NIDE_RS01890 5ffd94a7c55ef0a6911315e2202c7144 355 Pfam PF00591 Glycosyl transferase family, a/b domain 91 330 8.8E-36 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 NIDE_RS01890 5ffd94a7c55ef0a6911315e2202c7144 355 Gene3D G3DSA:1.20.970.10 2 65 1.8E-17 T 23-04-2016 NIDE_RS01890 5ffd94a7c55ef0a6911315e2202c7144 355 SUPERFAMILY SSF47648 10 71 9.94E-16 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain NIDE_RS04460 1dce32eee5dc917660145163beeef037 211 Pfam PF02552 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit 26 187 1.5E-39 T 23-04-2016 IPR003704 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit GO:0019385 NIDE_RS04460 1dce32eee5dc917660145163beeef037 211 Pfam PF08263 Leucine rich repeat N-terminal domain 118 142 0.0014 T 23-04-2016 IPR013210 Leucine-rich repeat-containing N-terminal, plant-type NIDE_RS04460 1dce32eee5dc917660145163beeef037 211 SUPERFAMILY SSF52467 43 180 1.05E-5 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS12985 8ae8093d8d32e1b6de24509b4eb4e9b1 168 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 2 25 2.2E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS12985 8ae8093d8d32e1b6de24509b4eb4e9b1 168 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 3 26 2.7E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS12985 8ae8093d8d32e1b6de24509b4eb4e9b1 168 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 4 24 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS12985 8ae8093d8d32e1b6de24509b4eb4e9b1 168 SUPERFAMILY SSF54523 7 149 9.94E-13 T 23-04-2016 NIDE_RS12985 8ae8093d8d32e1b6de24509b4eb4e9b1 168 Gene3D G3DSA:3.30.700.10 7 65 3.8E-6 T 23-04-2016 NIDE_RS12985 8ae8093d8d32e1b6de24509b4eb4e9b1 168 PRINTS PR00813 Bacterial general secretion pathway protein G signature 41 59 1.0E-5 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 NIDE_RS12985 8ae8093d8d32e1b6de24509b4eb4e9b1 168 PRINTS PR00813 Bacterial general secretion pathway protein G signature 5 30 1.0E-5 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 NIDE_RS15655 c242ab5f2d3d42c69fa9b0c96d28f6ed 569 PANTHER PTHR22916 461 523 7.4E-37 T 23-04-2016 NIDE_RS15655 c242ab5f2d3d42c69fa9b0c96d28f6ed 569 PANTHER PTHR22916 272 444 7.4E-37 T 23-04-2016 NIDE_RS15655 c242ab5f2d3d42c69fa9b0c96d28f6ed 569 Pfam PF00535 Glycosyl transferase family 2 308 445 3.5E-16 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS15655 c242ab5f2d3d42c69fa9b0c96d28f6ed 569 SUPERFAMILY SSF53448 53 259 3.84E-20 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS15655 c242ab5f2d3d42c69fa9b0c96d28f6ed 569 SUPERFAMILY SSF53448 290 530 5.25E-50 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS15655 c242ab5f2d3d42c69fa9b0c96d28f6ed 569 Gene3D G3DSA:3.90.550.10 53 273 8.1E-21 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS15655 c242ab5f2d3d42c69fa9b0c96d28f6ed 569 Gene3D G3DSA:3.90.550.10 305 554 5.1E-50 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS06795 46e620bf70cd1abd32676f70ebf05b7f 103 Pfam PF12098 Protein of unknown function (DUF3574) 5 103 1.7E-32 T 23-04-2016 IPR021957 Protein of unknown function DUF3574 NIDE_RS10240 ffddc7ebacbaf9c623bb431b9128b2b8 693 Gene3D G3DSA:2.160.20.10 345 491 2.0E-9 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS10240 ffddc7ebacbaf9c623bb431b9128b2b8 693 SUPERFAMILY SSF51126 346 548 1.1E-10 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS07855 58735fa0673a0b536c2a51caf7b4537c 384 SUPERFAMILY SSF53649 214 381 3.93E-43 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 NIDE_RS07855 58735fa0673a0b536c2a51caf7b4537c 384 SUPERFAMILY SSF53649 1 99 3.93E-43 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 NIDE_RS07855 58735fa0673a0b536c2a51caf7b4537c 384 Gene3D G3DSA:3.40.720.10 217 382 8.3E-47 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 NIDE_RS07855 58735fa0673a0b536c2a51caf7b4537c 384 Gene3D G3DSA:3.40.720.10 1 99 8.3E-47 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 NIDE_RS07855 58735fa0673a0b536c2a51caf7b4537c 384 PANTHER PTHR21110 3 383 2.4E-71 T 23-04-2016 NIDE_RS07855 58735fa0673a0b536c2a51caf7b4537c 384 PIRSF PIRSF001491 1 382 2.4E-80 T 23-04-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 NIDE_RS07855 58735fa0673a0b536c2a51caf7b4537c 384 PANTHER PTHR21110:SF0 3 383 2.4E-71 T 23-04-2016 NIDE_RS07855 58735fa0673a0b536c2a51caf7b4537c 384 SUPERFAMILY SSF143856 103 213 2.62E-22 T 23-04-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 NIDE_RS07855 58735fa0673a0b536c2a51caf7b4537c 384 Pfam PF01676 Metalloenzyme superfamily 284 367 1.4E-10 T 23-04-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 NIDE_RS07855 58735fa0673a0b536c2a51caf7b4537c 384 Gene3D G3DSA:3.30.70.1250 103 213 2.3E-28 T 23-04-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 NIDE_RS06540 b6a3efaa5c3fe582c1741652ddb05dfc 316 SUPERFAMILY SSF53067 12 134 1.14E-33 T 23-04-2016 NIDE_RS06540 b6a3efaa5c3fe582c1741652ddb05dfc 316 SUPERFAMILY SSF53067 138 312 5.83E-43 T 23-04-2016 NIDE_RS06540 b6a3efaa5c3fe582c1741652ddb05dfc 316 PANTHER PTHR30005 8 310 2.7E-86 T 23-04-2016 NIDE_RS06540 b6a3efaa5c3fe582c1741652ddb05dfc 316 Gene3D G3DSA:3.30.420.150 137 314 1.7E-56 T 23-04-2016 NIDE_RS06540 b6a3efaa5c3fe582c1741652ddb05dfc 316 Pfam PF02541 Ppx/GppA phosphatase family 32 311 8.9E-71 T 23-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 NIDE_RS06540 b6a3efaa5c3fe582c1741652ddb05dfc 316 Gene3D G3DSA:3.30.420.40 5 132 1.6E-42 T 23-04-2016 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 SUPERFAMILY SSF51735 1 188 3.74E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 413 7.8E-143 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 SMART SM00984 316 417 1.0E-43 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 Gene3D G3DSA:1.20.5.100 205 231 5.0E-19 T 23-04-2016 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 316 416 2.4E-29 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 202 292 8.9E-38 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 PANTHER PTHR11374 1 437 1.3E-233 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 183 1.4E-65 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 Gene3D G3DSA:3.40.50.720 1 204 1.1E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 PANTHER PTHR11374:SF18 1 437 1.3E-233 T 23-04-2016 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 PIRSF PIRSF500134 1 435 2.7E-180 T 23-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 SUPERFAMILY SSF52413 303 426 7.59E-35 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 Gene3D G3DSA:3.40.50.720 232 434 1.1E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 SUPERFAMILY SSF48179 201 294 9.52E-32 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS18905 60e0316d0c32d721ac460fcdf39e4c29 439 PIRSF PIRSF000124 1 432 4.5E-143 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 NIDE_RS09260 99473ea9b54591533ed54280613f0481 488 PANTHER PTHR34597:SF1 3 488 1.4E-64 T 23-04-2016 NIDE_RS09260 99473ea9b54591533ed54280613f0481 488 Gene3D G3DSA:2.40.160.50 104 484 3.2E-68 T 23-04-2016 NIDE_RS09260 99473ea9b54591533ed54280613f0481 488 Gene3D G3DSA:3.10.20.310 2 69 1.1E-18 T 23-04-2016 NIDE_RS09260 99473ea9b54591533ed54280613f0481 488 PANTHER PTHR34597 3 488 1.4E-64 T 23-04-2016 NIDE_RS09260 99473ea9b54591533ed54280613f0481 488 Pfam PF08479 POTRA domain, ShlB-type 1 69 5.8E-18 T 23-04-2016 IPR013686 Polypeptide-transport-associated, ShlB-type NIDE_RS09260 99473ea9b54591533ed54280613f0481 488 Pfam PF01103 Surface antigen 172 449 2.1E-10 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 NIDE_RS16810 5856631ff613384bdd5e568fedd5be45 285 Pfam PF08241 Methyltransferase domain 55 153 2.5E-23 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS16810 5856631ff613384bdd5e568fedd5be45 285 SUPERFAMILY SSF53335 14 284 5.78E-47 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS16810 5856631ff613384bdd5e568fedd5be45 285 Gene3D G3DSA:3.40.50.150 41 284 2.4E-47 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS16810 5856631ff613384bdd5e568fedd5be45 285 PANTHER PTHR10108 1 216 2.9E-37 T 23-04-2016 NIDE_RS02095 b47eea7bc41b681c2ea83bd0d79f675c 89 Pfam PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ 4 89 2.3E-31 T 23-04-2016 IPR004386 Toxin-antitoxin system, YafQ-like toxin NIDE_RS02095 b47eea7bc41b681c2ea83bd0d79f675c 89 PANTHER PTHR40588 7 89 1.6E-23 T 23-04-2016 NIDE_RS02095 b47eea7bc41b681c2ea83bd0d79f675c 89 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 7 88 5.5E-22 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NIDE_RS02095 b47eea7bc41b681c2ea83bd0d79f675c 89 SUPERFAMILY SSF143011 5 88 7.65E-22 T 23-04-2016 NIDE_RS02095 b47eea7bc41b681c2ea83bd0d79f675c 89 PIRSF PIRSF006156 1 89 3.7E-28 T 23-04-2016 IPR004386 Toxin-antitoxin system, YafQ-like toxin NIDE_RS06290 2f296e966ccfab481101a066fdfc8e79 589 Gene3D G3DSA:3.60.110.10 1 269 1.2E-71 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS06290 2f296e966ccfab481101a066fdfc8e79 589 SUPERFAMILY SSF52402 310 573 1.89E-75 T 23-04-2016 NIDE_RS06290 2f296e966ccfab481101a066fdfc8e79 589 Gene3D G3DSA:3.40.50.620 310 572 3.2E-74 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS06290 2f296e966ccfab481101a066fdfc8e79 589 SUPERFAMILY SSF56317 1 271 2.35E-70 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS06290 2f296e966ccfab481101a066fdfc8e79 589 Pfam PF02540 NAD synthase 315 565 2.4E-75 T 23-04-2016 IPR022310 NAD/GMP synthase NIDE_RS06290 2f296e966ccfab481101a066fdfc8e79 589 TIGRFAM TIGR00552 nadE: NAD+ synthetase 322 570 7.8E-61 T 23-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 NIDE_RS06290 2f296e966ccfab481101a066fdfc8e79 589 PANTHER PTHR23090 1 85 2.3E-172 T 23-04-2016 NIDE_RS06290 2f296e966ccfab481101a066fdfc8e79 589 PANTHER PTHR23090 102 586 2.3E-172 T 23-04-2016 NIDE_RS06290 2f296e966ccfab481101a066fdfc8e79 589 Pfam PF00795 Carbon-nitrogen hydrolase 5 267 8.2E-37 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS06290 2f296e966ccfab481101a066fdfc8e79 589 PIRSF PIRSF006630 1 589 2.2E-200 T 23-04-2016 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|UniPathway: UPA00253 NIDE_RS16595 f5040840b914e7bcac2364ea441a43d0 371 Gene3D G3DSA:1.25.10.10 131 232 7.1E-4 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS16595 f5040840b914e7bcac2364ea441a43d0 371 PANTHER PTHR39167 1 371 1.5E-86 T 23-04-2016 NIDE_RS16595 f5040840b914e7bcac2364ea441a43d0 371 SUPERFAMILY SSF48371 45 244 1.97E-37 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS10120 41f87c7bdeb521e416be3ab13f91ea42 1119 SUPERFAMILY SSF53474 325 410 1.39E-11 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS10120 41f87c7bdeb521e416be3ab13f91ea42 1119 SUPERFAMILY SSF53474 165 288 1.39E-11 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS10120 41f87c7bdeb521e416be3ab13f91ea42 1119 Gene3D G3DSA:3.40.50.1820 167 287 1.3E-8 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS10120 41f87c7bdeb521e416be3ab13f91ea42 1119 Gene3D G3DSA:3.40.50.1820 372 450 1.3E-8 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS10120 41f87c7bdeb521e416be3ab13f91ea42 1119 Pfam PF12770 CHAT domain 605 873 2.2E-29 T 23-04-2016 IPR024983 CHAT domain NIDE_RS13095 9eb6df9ccbdaabb4676c3ca0ee40201c 176 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 26 165 1.0E-34 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily NIDE_RS13095 9eb6df9ccbdaabb4676c3ca0ee40201c 176 PANTHER PTHR11717 21 163 3.2E-25 T 23-04-2016 NIDE_RS13095 9eb6df9ccbdaabb4676c3ca0ee40201c 176 SUPERFAMILY SSF52788 24 166 2.09E-37 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily NIDE_RS13095 9eb6df9ccbdaabb4676c3ca0ee40201c 176 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 140 155 1.3E-13 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 NIDE_RS13095 9eb6df9ccbdaabb4676c3ca0ee40201c 176 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 100 115 1.3E-13 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 NIDE_RS13095 9eb6df9ccbdaabb4676c3ca0ee40201c 176 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 26 43 1.3E-13 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 NIDE_RS13095 9eb6df9ccbdaabb4676c3ca0ee40201c 176 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 122 135 1.3E-13 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 NIDE_RS13095 9eb6df9ccbdaabb4676c3ca0ee40201c 176 SMART SM00226 24 168 3.8E-32 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily NIDE_RS13095 9eb6df9ccbdaabb4676c3ca0ee40201c 176 Gene3D G3DSA:3.40.50.270 25 169 3.6E-41 T 23-04-2016 NIDE_RS12885 45a41f8d6134743876f75af85f7bd9f9 153 PANTHER PTHR41294 1 145 8.9E-41 T 23-04-2016 NIDE_RS12885 45a41f8d6134743876f75af85f7bd9f9 153 Gene3D G3DSA:3.10.180.10 4 117 2.0E-19 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS12885 45a41f8d6134743876f75af85f7bd9f9 153 PANTHER PTHR41294:SF1 1 145 8.9E-41 T 23-04-2016 NIDE_RS12885 45a41f8d6134743876f75af85f7bd9f9 153 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 113 3.0E-8 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIDE_RS12885 45a41f8d6134743876f75af85f7bd9f9 153 SUPERFAMILY SSF54593 4 120 1.11E-20 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS02025 f9f193a54acc34033bec2557bf58a53d 159 SUPERFAMILY SSF46458 40 156 1.39E-29 T 23-04-2016 IPR009050 Globin-like NIDE_RS02025 f9f193a54acc34033bec2557bf58a53d 159 Gene3D G3DSA:1.10.490.10 43 157 1.1E-36 T 23-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 NIDE_RS02025 f9f193a54acc34033bec2557bf58a53d 159 PANTHER PTHR10681 42 158 4.9E-15 T 23-04-2016 NIDE_RS02025 f9f193a54acc34033bec2557bf58a53d 159 Pfam PF01152 Bacterial-like globin 43 155 2.0E-15 T 23-04-2016 IPR001486 Truncated hemoglobin GO:0019825 NIDE_RS02025 f9f193a54acc34033bec2557bf58a53d 159 PANTHER PTHR10681:SF116 42 158 4.9E-15 T 23-04-2016 NIDE_RS03105 b5c1f62cc692bc98db72f3d43d2f35b7 101 SUPERFAMILY SSF46596 34 89 4.84E-5 T 23-04-2016 NIDE_RS03105 b5c1f62cc692bc98db72f3d43d2f35b7 101 Pfam PF16785 Small metal-binding protein 32 80 4.9E-8 T 23-04-2016 IPR031877 Metal-binding protein SmbP GO:0046872 NIDE_RS06920 1ca3de1850aa375fdf27d575fcf96167 107 Pfam PF00839 Cysteine rich repeat 57 91 6.8E-6 T 23-04-2016 IPR001893 Cysteine-rich Golgi apparatus protein 1 repeat GO:0016020 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 17 689 2.7E-269 T 23-04-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 144 167 - T 23-04-2016 IPR025505 FHIPEP conserved site NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 PANTHER PTHR30161:SF1 1 692 0.0 T 23-04-2016 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 PIRSF PIRSF005419 1 694 2.1E-262 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 PANTHER PTHR30161 1 692 0.0 T 23-04-2016 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 Pfam PF00771 FHIPEP family 28 679 4.6E-271 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 35 48 1.4E-54 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 239 253 1.4E-54 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 188 205 1.4E-54 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 139 155 1.4E-54 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 72 91 1.4E-54 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NIDE_RS10550 3947baac653dc680429728c18a53b3c0 702 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 158 176 1.4E-54 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 NIDE_RS06145 fa4c88b94d96e9d73a7c21a82fc8a87d 121 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 5 121 28.132 T 23-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06145 fa4c88b94d96e9d73a7c21a82fc8a87d 121 Gene3D G3DSA:3.30.420.100 23 121 4.1E-39 T 23-04-2016 NIDE_RS06145 fa4c88b94d96e9d73a7c21a82fc8a87d 121 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 5 121 8.2E-47 T 23-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06145 fa4c88b94d96e9d73a7c21a82fc8a87d 121 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 7 121 1.7E-40 T 23-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06145 fa4c88b94d96e9d73a7c21a82fc8a87d 121 SUPERFAMILY SSF53137 6 119 1.07E-47 T 23-04-2016 NIDE_RS06145 fa4c88b94d96e9d73a7c21a82fc8a87d 121 PANTHER PTHR12899 6 121 5.5E-43 T 23-04-2016 NIDE_RS16945 a07936368c8768005cdee5cfa3809804 353 Pfam PF01758 Sodium Bile acid symporter family 55 251 6.5E-42 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 NIDE_RS16945 a07936368c8768005cdee5cfa3809804 353 PIRSF PIRSF005508 1 352 3.8E-118 T 23-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 NIDE_RS16945 a07936368c8768005cdee5cfa3809804 353 PANTHER PTHR10361:SF31 2 350 8.5E-120 T 23-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 NIDE_RS16945 a07936368c8768005cdee5cfa3809804 353 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 6 340 8.7E-112 T 23-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 NIDE_RS16945 a07936368c8768005cdee5cfa3809804 353 PANTHER PTHR10361 2 350 8.5E-120 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 NIDE_RS20335 85395f64ccd39cfb6d34a214d6890e71 212 PRINTS PR00625 DnaJ domain signature 25 40 6.3E-20 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20335 85395f64ccd39cfb6d34a214d6890e71 212 PRINTS PR00625 DnaJ domain signature 7 25 6.3E-20 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20335 85395f64ccd39cfb6d34a214d6890e71 212 PRINTS PR00625 DnaJ domain signature 42 62 6.3E-20 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20335 85395f64ccd39cfb6d34a214d6890e71 212 Pfam PF00226 DnaJ domain 5 67 6.8E-26 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20335 85395f64ccd39cfb6d34a214d6890e71 212 SMART SM00271 4 62 5.9E-29 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20335 85395f64ccd39cfb6d34a214d6890e71 212 SUPERFAMILY SSF46565 2 90 2.75E-28 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20335 85395f64ccd39cfb6d34a214d6890e71 212 PANTHER PTHR24078 3 74 1.0E-24 T 23-04-2016 NIDE_RS20335 85395f64ccd39cfb6d34a214d6890e71 212 Gene3D G3DSA:1.10.287.110 3 74 3.8E-28 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS01270 147808b198d5dbd8c755114858fa6882 266 Gene3D G3DSA:2.30.30.60 116 165 8.9E-14 T 23-04-2016 NIDE_RS01270 147808b198d5dbd8c755114858fa6882 266 SUPERFAMILY SSF82861 14 99 8.89E-16 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 NIDE_RS01270 147808b198d5dbd8c755114858fa6882 266 SUPERFAMILY SSF82689 168 264 1.03E-25 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 NIDE_RS01270 147808b198d5dbd8c755114858fa6882 266 Gene3D G3DSA:3.30.70.100 168 250 1.1E-20 T 23-04-2016 NIDE_RS01270 147808b198d5dbd8c755114858fa6882 266 PANTHER PTHR30221 11 265 7.7E-59 T 23-04-2016 NIDE_RS01270 147808b198d5dbd8c755114858fa6882 266 SUPERFAMILY SSF50182 101 165 6.87E-14 T 23-04-2016 IPR010920 LSM domain NIDE_RS01270 147808b198d5dbd8c755114858fa6882 266 Pfam PF00924 Mechanosensitive ion channel 59 250 9.3E-43 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 NIDE_RS01270 147808b198d5dbd8c755114858fa6882 266 PANTHER PTHR30221:SF7 11 265 7.7E-59 T 23-04-2016 NIDE_RS13210 589211c12e884bc019b94302561aa7f4 422 Pfam PF13489 Methyltransferase domain 89 239 9.4E-15 T 23-04-2016 NIDE_RS13210 589211c12e884bc019b94302561aa7f4 422 PANTHER PTHR10108 35 295 3.4E-47 T 23-04-2016 NIDE_RS13210 589211c12e884bc019b94302561aa7f4 422 PANTHER PTHR10108:SF714 35 295 3.4E-47 T 23-04-2016 NIDE_RS13210 589211c12e884bc019b94302561aa7f4 422 Pfam PF08421 Putative zinc binding domain 6 67 7.5E-25 T 23-04-2016 IPR013630 Methyltransferase putative zinc binding domain KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.-|UniPathway: UPA00853 NIDE_RS13210 589211c12e884bc019b94302561aa7f4 422 SUPERFAMILY SSF53335 64 254 6.99E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13210 589211c12e884bc019b94302561aa7f4 422 Pfam PF08484 C-methyltransferase C-terminal domain 247 405 3.5E-66 T 23-04-2016 IPR013691 C-methyltransferase KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.-|UniPathway: UPA00853 NIDE_RS13210 589211c12e884bc019b94302561aa7f4 422 Gene3D G3DSA:3.40.50.150 88 257 2.2E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13210 589211c12e884bc019b94302561aa7f4 422 Gene3D G3DSA:3.40.50.150 378 402 2.2E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 PANTHER PTHR10744:SF1 7 84 5.0E-30 T 23-04-2016 NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 8 79 5.5E-33 T 23-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 Gene3D G3DSA:2.40.50.140 7 86 1.0E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 PRINTS PR00973 Ribosomal protein S17 family signature 59 69 3.7E-10 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 PRINTS PR00973 Ribosomal protein S17 family signature 27 50 3.7E-10 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 PRINTS PR00973 Ribosomal protein S17 family signature 69 76 3.7E-10 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 13 79 1.0E-19 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 PANTHER PTHR10744 7 84 5.0E-30 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 6 84 24.064 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 Pfam PF00366 Ribosomal protein S17 13 79 5.0E-29 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 ProSitePatterns PS00056 Ribosomal protein S17 signature. 59 71 - T 23-04-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06115 e5715ec158d2d0e5ff6b4bdaa7cb8c7e 89 SUPERFAMILY SSF50249 8 84 4.28E-29 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS14085 de65e661540250b7f3a6fc8cb143ddfe 105 Gene3D G3DSA:3.30.1320.10 2 84 6.2E-29 T 23-04-2016 IPR023803 Ribosomal protein S16 domain NIDE_RS14085 de65e661540250b7f3a6fc8cb143ddfe 105 SUPERFAMILY SSF54565 2 91 6.67E-30 T 23-04-2016 IPR023803 Ribosomal protein S16 domain NIDE_RS14085 de65e661540250b7f3a6fc8cb143ddfe 105 ProSitePatterns PS00732 Ribosomal protein S16 signature. 3 12 - T 23-04-2016 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14085 de65e661540250b7f3a6fc8cb143ddfe 105 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 80 4.2E-29 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14085 de65e661540250b7f3a6fc8cb143ddfe 105 Pfam PF00886 Ribosomal protein S16 9 67 2.1E-20 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14085 de65e661540250b7f3a6fc8cb143ddfe 105 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 77 22.226 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS14085 de65e661540250b7f3a6fc8cb143ddfe 105 PANTHER PTHR12919 2 84 9.5E-34 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS11495 aa5f1b8fcd82833f648835658a4e9d30 220 PANTHER PTHR30471 1 220 1.9E-80 T 23-04-2016 NIDE_RS11495 aa5f1b8fcd82833f648835658a4e9d30 220 Gene3D G3DSA:3.40.140.10 99 218 7.0E-39 T 23-04-2016 NIDE_RS11495 aa5f1b8fcd82833f648835658a4e9d30 220 TIGRFAM TIGR00608 radc: DNA repair protein RadC 13 220 3.1E-54 T 23-04-2016 IPR001405 RadC protein NIDE_RS11495 aa5f1b8fcd82833f648835658a4e9d30 220 SUPERFAMILY SSF102712 105 188 3.53E-5 T 23-04-2016 NIDE_RS11495 aa5f1b8fcd82833f648835658a4e9d30 220 Pfam PF04002 RadC-like JAB domain 101 218 3.4E-39 T 23-04-2016 IPR025657 RadC-like JAB domain NIDE_RS11495 aa5f1b8fcd82833f648835658a4e9d30 220 PANTHER PTHR30471:SF3 1 220 1.9E-80 T 23-04-2016 NIDE_RS07680 0fc4528c637c24f0372edbb0bf37704d 668 PANTHER PTHR31645 2 608 3.0E-144 T 23-04-2016 NIDE_RS07680 0fc4528c637c24f0372edbb0bf37704d 668 TIGRFAM TIGR00733 TIGR00733: oligopeptide transporter, OPT family 24 610 1.6E-177 T 23-04-2016 IPR004814 Oligopeptide transporter OPT NIDE_RS07680 0fc4528c637c24f0372edbb0bf37704d 668 TIGRFAM TIGR00728 OPT_sfam: oligopeptide transporter, OPT superfamily 332 606 1.1E-40 T 23-04-2016 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 NIDE_RS07680 0fc4528c637c24f0372edbb0bf37704d 668 TIGRFAM TIGR00728 OPT_sfam: oligopeptide transporter, OPT superfamily 19 325 2.9E-53 T 23-04-2016 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 NIDE_RS07680 0fc4528c637c24f0372edbb0bf37704d 668 Pfam PF03169 OPT oligopeptide transporter protein 24 609 7.8E-111 T 23-04-2016 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 NIDE_RS07680 0fc4528c637c24f0372edbb0bf37704d 668 PANTHER PTHR31645:SF0 2 608 3.0E-144 T 23-04-2016 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 Gene3D G3DSA:3.20.20.70 1 289 1.4E-121 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 PANTHER PTHR12128:SF34 1 289 2.3E-135 T 23-04-2016 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 SMART SM01130 1 288 1.3E-148 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 37 54 - T 23-04-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 286 66.078 T 23-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 SUPERFAMILY SSF51569 1 289 6.59E-104 T 23-04-2016 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 PIRSF PIRSF001365 1 290 3.1E-95 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 PANTHER PTHR12128 1 289 2.3E-135 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 286 7.6E-112 T 23-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 Pfam PF00701 Dihydrodipicolinate synthetase family 2 286 2.7E-99 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 70 88 6.9E-36 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 6.9E-36 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 127 144 6.9E-36 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 NIDE_RS02240 cbe228e3f5adbfee85566225684e754f 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 102 118 6.9E-36 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Gene3D G3DSA:3.40.50.2300 521 646 2.2E-26 T 23-04-2016 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Gene3D G3DSA:1.10.287.130 269 338 2.5E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 SMART SM00387 389 505 1.2E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Gene3D G3DSA:1.20.120.160 832 936 2.1E-19 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Gene3D G3DSA:3.40.50.2300 668 790 2.2E-42 T 23-04-2016 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Pfam PF00072 Response regulator receiver domain 525 633 2.0E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Pfam PF00072 Response regulator receiver domain 670 785 2.6E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 PANTHER PTHR24423 667 830 3.1E-162 T 23-04-2016 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 PANTHER PTHR24423 256 532 3.1E-162 T 23-04-2016 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 SUPERFAMILY SSF103190 22 144 8.24E-9 T 23-04-2016 IPR029151 Periplasmic sensor domain-like NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 SUPERFAMILY SSF47384 262 343 1.16E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 PANTHER PTHR24423:SF382 667 830 3.1E-162 T 23-04-2016 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 PANTHER PTHR24423:SF382 256 532 3.1E-162 T 23-04-2016 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 SUPERFAMILY SSF47226 810 938 2.09E-21 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 SMART SM00448 668 785 2.4E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 SMART SM00448 523 641 1.1E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Pfam PF00512 His Kinase A (phospho-acceptor) domain 277 342 6.7E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Pfam PF01627 Hpt domain 851 920 4.6E-9 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Gene3D G3DSA:3.30.565.10 342 509 3.2E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 SUPERFAMILY SSF55874 331 501 1.57E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 458 9.6E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 444 9.6E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 PRINTS PR00344 Bacterial sensor protein C-terminal signature 489 502 9.6E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 PRINTS PR00344 Bacterial sensor protein C-terminal signature 465 483 9.6E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 SUPERFAMILY SSF52172 669 791 1.38E-37 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 389 504 4.0E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 Gene3D G3DSA:3.30.450.20 19 150 1.2E-7 T 23-04-2016 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 SMART SM00388 277 342 2.9E-23 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03755 79fdceed9c63c169be56e2014fea25a5 945 SUPERFAMILY SSF52172 520 646 3.7E-27 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 SUPERFAMILY SSF50156 229 359 1.84E-16 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 Gene3D G3DSA:2.30.42.10 274 369 1.7E-18 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 Gene3D G3DSA:2.40.10.10 48 160 3.4E-33 T 23-04-2016 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 PANTHER PTHR22939:SF81 46 364 6.2E-120 T 23-04-2016 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 Gene3D G3DSA:2.40.10.10 161 273 6.1E-44 T 23-04-2016 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 PRINTS PR00834 HtrA/DegQ protease family signature 203 220 1.6E-48 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 PRINTS PR00834 HtrA/DegQ protease family signature 317 329 1.6E-48 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 PRINTS PR00834 HtrA/DegQ protease family signature 124 144 1.6E-48 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 PRINTS PR00834 HtrA/DegQ protease family signature 103 115 1.6E-48 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 PRINTS PR00834 HtrA/DegQ protease family signature 225 242 1.6E-48 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 PRINTS PR00834 HtrA/DegQ protease family signature 166 190 1.6E-48 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 PANTHER PTHR22939 46 364 6.2E-120 T 23-04-2016 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 Pfam PF13180 PDZ domain 271 364 4.2E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 Pfam PF13365 Trypsin-like peptidase domain 94 232 1.2E-36 T 23-04-2016 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 SMART SM00228 271 359 1.3E-9 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS04365 f4eb7cae0706d37bd0c18e4a5e283a54 372 SUPERFAMILY SSF50494 59 267 2.99E-64 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS18830 ce377f00715b8f402aa2abbc86e8ed3e 337 PANTHER PTHR13767:SF2 11 300 8.4E-102 T 23-04-2016 NIDE_RS18830 ce377f00715b8f402aa2abbc86e8ed3e 337 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 34 180 1.8E-52 T 23-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 NIDE_RS18830 ce377f00715b8f402aa2abbc86e8ed3e 337 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 10 321 17.731 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS18830 ce377f00715b8f402aa2abbc86e8ed3e 337 SUPERFAMILY SSF55120 10 225 5.76E-74 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS18830 ce377f00715b8f402aa2abbc86e8ed3e 337 PANTHER PTHR13767 11 300 8.4E-102 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS18830 ce377f00715b8f402aa2abbc86e8ed3e 337 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 239 2.4E-13 T 23-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal NIDE_RS18830 ce377f00715b8f402aa2abbc86e8ed3e 337 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 11 218 2.9E-70 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS09025 d18b5b808b12a4dc5a86ddd2fe706061 240 Gene3D G3DSA:3.40.1730.10 1 111 3.1E-34 T 23-04-2016 NIDE_RS09025 d18b5b808b12a4dc5a86ddd2fe706061 240 Gene3D G3DSA:3.40.1730.10 162 202 3.1E-34 T 23-04-2016 NIDE_RS09025 d18b5b808b12a4dc5a86ddd2fe706061 240 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 1 66 3.3E-7 T 23-04-2016 IPR017748 Type VI secretion system-associated, BMAA0400 NIDE_RS12450 8c9dcb76b6d151ff9bc3e14c21543618 445 PANTHER PTHR30026 36 441 6.7E-36 T 23-04-2016 NIDE_RS12450 8c9dcb76b6d151ff9bc3e14c21543618 445 Gene3D G3DSA:1.20.1600.10 42 441 1.2E-55 T 23-04-2016 NIDE_RS12450 8c9dcb76b6d151ff9bc3e14c21543618 445 SUPERFAMILY SSF56954 10 441 1.57E-67 T 23-04-2016 NIDE_RS12450 8c9dcb76b6d151ff9bc3e14c21543618 445 Pfam PF02321 Outer membrane efflux protein 44 231 6.9E-17 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS12450 8c9dcb76b6d151ff9bc3e14c21543618 445 Pfam PF02321 Outer membrane efflux protein 258 439 5.8E-21 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 83 26.805 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 Gene3D G3DSA:2.40.50.100 20 83 7.8E-29 T 23-04-2016 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 80 2.1E-35 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 Pfam PF01016 Ribosomal L27 protein 2 80 4.9E-36 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 70 5.0E-12 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 PANTHER PTHR15893 1 83 1.0E-42 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 23-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 PRINTS PR00063 Ribosomal protein L27 signature 54 78 2.2E-36 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 PRINTS PR00063 Ribosomal protein L27 signature 29 53 2.2E-36 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 PRINTS PR00063 Ribosomal protein L27 signature 4 28 2.2E-36 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS05080 753dba579d708487dc33716fdc8ffd80 87 SUPERFAMILY SSF110324 2 81 1.53E-31 T 23-04-2016 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Pfam PF16184 Cadherin-like 1572 1694 3.5E-27 T 23-04-2016 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SUPERFAMILY SSF49313 438 533 5.89E-12 T 23-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SUPERFAMILY SSF49313 1727 1818 2.62E-11 T 23-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SUPERFAMILY SSF49313 1181 1266 2.57E-12 T 23-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SUPERFAMILY SSF49313 751 836 3.57E-12 T 23-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Pfam PF00028 Cadherin domain 751 833 2.1E-9 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Pfam PF00028 Cadherin domain 1396 1476 2.7E-9 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Pfam PF00028 Cadherin domain 543 627 1.3E-9 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Pfam PF00028 Cadherin domain 966 1048 2.1E-9 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Pfam PF00028 Cadherin domain 1736 1817 3.6E-7 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Pfam PF00028 Cadherin domain 1181 1261 2.7E-9 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Pfam PF00028 Cadherin domain 649 735 2.6E-8 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Pfam PF00028 Cadherin domain 439 526 3.7E-7 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Gene3D G3DSA:2.60.40.60 966 1050 1.2E-13 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Gene3D G3DSA:2.60.40.60 1396 1480 9.3E-14 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Gene3D G3DSA:2.60.40.60 1181 1265 1.0E-13 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Gene3D G3DSA:2.60.40.60 751 835 1.2E-13 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SMART SM00112 1410 1488 2.6E-8 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SMART SM00112 765 843 3.4E-8 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SMART SM00112 452 535 0.0013 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SMART SM00112 980 1058 3.4E-8 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SMART SM00112 660 743 3.8E-5 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SMART SM00112 1195 1273 2.6E-8 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SMART SM00112 1740 1824 0.011 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SMART SM00112 557 635 2.6E-13 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SUPERFAMILY SSF49313 1396 1481 2.57E-12 T 23-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Pfam PF14252 Domain of unknown function (DUF4347) 100 264 5.5E-56 T 23-04-2016 IPR025592 Domain of unknown function DUF4347 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SUPERFAMILY SSF49313 648 741 4.71E-12 T 23-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SUPERFAMILY SSF49313 966 1051 3.14E-12 T 23-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Gene3D G3DSA:2.60.40.60 649 742 2.9E-13 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Gene3D G3DSA:2.60.40.60 439 534 1.9E-11 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Gene3D G3DSA:2.60.40.60 1727 1818 5.9E-11 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 Gene3D G3DSA:2.60.40.60 543 638 1.3E-15 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 SUPERFAMILY SSF49313 543 637 7.72E-14 T 23-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 PANTHER PTHR24027 394 835 1.9E-69 T 23-04-2016 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 PANTHER PTHR24027 1958 1984 1.9E-69 T 23-04-2016 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 PANTHER PTHR24027 951 1040 1.9E-69 T 23-04-2016 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 PANTHER PTHR24027 1376 1487 1.9E-69 T 23-04-2016 NIDE_RS14370 bc8e1d811f5067d0d2bd3e9643606271 2018 PANTHER PTHR24027 1158 1257 1.9E-69 T 23-04-2016 NIDE_RS09570 c972c0588c5dc530576bf010d5a943a4 215 Gene3D G3DSA:3.40.50.10230 11 213 9.5E-82 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 NIDE_RS09570 c972c0588c5dc530576bf010d5a943a4 215 SUPERFAMILY SSF63965 13 213 3.92E-71 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 NIDE_RS09570 c972c0588c5dc530576bf010d5a943a4 215 Pfam PF02570 Precorrin-8X methylmutase 14 208 2.2E-78 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 NIDE_RS09570 c972c0588c5dc530576bf010d5a943a4 215 PANTHER PTHR32439:SF1 6 215 1.2E-72 T 23-04-2016 NIDE_RS09570 c972c0588c5dc530576bf010d5a943a4 215 PANTHER PTHR32439 6 215 1.2E-72 T 23-04-2016 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 23-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 PANTHER PTHR12220 1 138 1.2E-75 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 SUPERFAMILY SSF54686 2 136 7.59E-57 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.5E-38 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.5E-38 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.5E-38 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.5E-38 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 4.2E-60 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 Gene3D G3DSA:3.90.1170.10 23 136 6.4E-54 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 39.941 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 NIDE_RS06105 fa956944e919fa05c866999ccc4b8e56 138 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.5E-49 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 NIDE_RS16655 f6412066cf11ff7bf19e47f0c033256d 194 Gene3D G3DSA:2.40.160.20 41 155 1.6E-6 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS16655 f6412066cf11ff7bf19e47f0c033256d 194 SUPERFAMILY SSF56925 39 155 2.62E-10 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS16655 f6412066cf11ff7bf19e47f0c033256d 194 Pfam PF13505 Outer membrane protein beta-barrel domain 17 157 2.1E-9 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel NIDE_RS16360 e2a8954dfb48af482b5845e799857800 377 SUPERFAMILY SSF102114 83 322 1.09E-37 T 23-04-2016 NIDE_RS16360 e2a8954dfb48af482b5845e799857800 377 Pfam PF04055 Radical SAM superfamily 99 246 7.8E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS16360 e2a8954dfb48af482b5845e799857800 377 TIGRFAM TIGR00238 TIGR00238: KamA family protein 2 310 2.2E-89 T 23-04-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase NIDE_RS16360 e2a8954dfb48af482b5845e799857800 377 PIRSF PIRSF004911 1 363 1.7E-133 T 23-04-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase NIDE_RS16360 e2a8954dfb48af482b5845e799857800 377 Pfam PF12544 Lysine-2,3-aminomutase 289 348 6.8E-19 T 23-04-2016 IPR025895 Lysine-2,3-aminomutase, C-terminal domain NIDE_RS16360 e2a8954dfb48af482b5845e799857800 377 PANTHER PTHR30538 2 346 1.3E-129 T 23-04-2016 NIDE_RS16360 e2a8954dfb48af482b5845e799857800 377 PANTHER PTHR30538:SF1 2 346 1.3E-129 T 23-04-2016 NIDE_RS16360 e2a8954dfb48af482b5845e799857800 377 SMART SM00729 93 291 0.0098 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS16360 e2a8954dfb48af482b5845e799857800 377 Gene3D G3DSA:3.20.20.70 85 316 2.3E-27 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS01405 c1757c0b1bb78e95eb1433f100ab5e3f 223 Pfam PF00072 Response regulator receiver domain 3 113 1.2E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS01405 c1757c0b1bb78e95eb1433f100ab5e3f 223 Gene3D G3DSA:1.10.10.10 123 221 2.1E-33 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS01405 c1757c0b1bb78e95eb1433f100ab5e3f 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 5.9E-26 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS01405 c1757c0b1bb78e95eb1433f100ab5e3f 223 PANTHER PTHR26402:SF316 1 221 1.1E-100 T 23-04-2016 NIDE_RS01405 c1757c0b1bb78e95eb1433f100ab5e3f 223 SUPERFAMILY SSF52172 1 179 8.83E-41 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS01405 c1757c0b1bb78e95eb1433f100ab5e3f 223 Gene3D G3DSA:3.40.50.2300 1 122 1.2E-39 T 23-04-2016 NIDE_RS01405 c1757c0b1bb78e95eb1433f100ab5e3f 223 PANTHER PTHR26402 1 221 1.1E-100 T 23-04-2016 NIDE_RS01405 c1757c0b1bb78e95eb1433f100ab5e3f 223 SMART SM00448 1 112 8.2E-39 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS01405 c1757c0b1bb78e95eb1433f100ab5e3f 223 SMART SM00862 145 220 1.2E-26 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 Pfam PF00009 Elongation factor Tu GTP binding domain 10 208 1.2E-53 T 23-04-2016 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 PANTHER PTHR23115 1 399 4.1E-231 T 23-04-2016 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 Gene3D G3DSA:2.40.30.10 307 400 7.9E-45 T 23-04-2016 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 Pfam PF03144 Elongation factor Tu domain 2 232 300 1.5E-16 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 401 58.749 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 400 3.5E-214 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 Pfam PF03143 Elongation factor Tu C-terminal domain 305 399 1.5E-33 T 23-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 SUPERFAMILY SSF50465 309 401 5.47E-36 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 Gene3D G3DSA:3.40.50.300 4 215 9.4E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 SUPERFAMILY SSF50447 212 308 8.05E-31 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 Gene3D G3DSA:2.40.30.10 216 305 1.8E-36 T 23-04-2016 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 156 1.0E-15 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 PRINTS PR00315 GTP-binding elongation factor signature 99 110 3.3E-20 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 PRINTS PR00315 GTP-binding elongation factor signature 83 93 3.3E-20 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.3E-20 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 PRINTS PR00315 GTP-binding elongation factor signature 136 145 3.3E-20 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 SUPERFAMILY SSF52540 8 233 3.22E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06060 37e4e5a6778e91b73194a5b1689d64e1 401 PANTHER PTHR23115:SF112 1 399 4.1E-231 T 23-04-2016 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 Pfam PF00009 Elongation factor Tu GTP binding domain 10 208 1.2E-53 T 23-04-2016 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 PANTHER PTHR23115 1 399 4.1E-231 T 23-04-2016 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 Gene3D G3DSA:2.40.30.10 307 400 7.9E-45 T 23-04-2016 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 Pfam PF03144 Elongation factor Tu domain 2 232 300 1.5E-16 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 401 58.749 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 400 3.5E-214 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 Pfam PF03143 Elongation factor Tu C-terminal domain 305 399 1.5E-33 T 23-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 SUPERFAMILY SSF50465 309 401 5.47E-36 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 Gene3D G3DSA:3.40.50.300 4 215 9.4E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 SUPERFAMILY SSF50447 212 308 8.05E-31 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 Gene3D G3DSA:2.40.30.10 216 305 1.8E-36 T 23-04-2016 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 156 1.0E-15 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 PRINTS PR00315 GTP-binding elongation factor signature 99 110 3.3E-20 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 PRINTS PR00315 GTP-binding elongation factor signature 83 93 3.3E-20 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.3E-20 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 PRINTS PR00315 GTP-binding elongation factor signature 136 145 3.3E-20 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 SUPERFAMILY SSF52540 8 233 3.22E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05995 37e4e5a6778e91b73194a5b1689d64e1 401 PANTHER PTHR23115:SF112 1 399 4.1E-231 T 23-04-2016 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 PRINTS PR00834 HtrA/DegQ protease family signature 153 173 9.7E-57 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 PRINTS PR00834 HtrA/DegQ protease family signature 250 267 9.7E-57 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 PRINTS PR00834 HtrA/DegQ protease family signature 193 217 9.7E-57 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 PRINTS PR00834 HtrA/DegQ protease family signature 228 245 9.7E-57 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 PRINTS PR00834 HtrA/DegQ protease family signature 337 349 9.7E-57 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 PRINTS PR00834 HtrA/DegQ protease family signature 132 144 9.7E-57 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 SUPERFAMILY SSF50156 424 510 2.1E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 PANTHER PTHR22939:SF93 119 392 8.9E-115 T 23-04-2016 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 SUPERFAMILY SSF50494 37 66 1.71E-62 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 SUPERFAMILY SSF50494 120 305 1.71E-62 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 47 507 6.0E-145 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 SUPERFAMILY SSF50156 280 387 1.6E-20 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 Pfam PF13180 PDZ domain 436 508 5.3E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 Pfam PF13180 PDZ domain 297 388 1.7E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 SMART SM00228 296 379 1.7E-10 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 SMART SM00228 420 501 3.5E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 PANTHER PTHR22939 119 392 8.9E-115 T 23-04-2016 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 Gene3D G3DSA:2.30.42.10 299 397 4.4E-28 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 Gene3D G3DSA:2.30.42.10 422 510 3.3E-19 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 Pfam PF13365 Trypsin-like peptidase domain 123 257 5.3E-32 T 23-04-2016 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 Gene3D G3DSA:2.40.10.10 188 298 3.2E-43 T 23-04-2016 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 Gene3D G3DSA:2.40.10.10 110 187 1.7E-34 T 23-04-2016 NIDE_RS15285 0a092722f8783d064b3bcbcf0fc40c33 511 Gene3D G3DSA:2.40.10.10 46 66 1.7E-34 T 23-04-2016 NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 ProSitePatterns PS00674 AAA-protein family signature. 293 311 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 Gene3D G3DSA:3.40.50.300 145 332 8.3E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 Pfam PF06480 FtsH Extracellular 8 96 1.1E-8 T 23-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 SMART SM00382 186 325 2.5E-25 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 Pfam PF01434 Peptidase family M41 386 592 1.5E-84 T 23-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 190 322 1.9E-44 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 SUPERFAMILY SSF52540 143 393 7.44E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 Gene3D G3DSA:1.10.8.60 333 398 8.2E-28 T 23-04-2016 NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 SUPERFAMILY SSF140990 404 593 3.14E-74 T 23-04-2016 NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 102 593 6.8E-240 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 599 38.202 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 NIDE_RS12550 cdb46446e7013001ffd8c4c958d3025b 604 PANTHER PTHR23076 1 593 0.0 T 23-04-2016 NIDE_RS07360 fb6b943a263332f89e9b2eeb0dde36c8 155 SUPERFAMILY SSF52833 6 155 1.6E-53 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS07360 fb6b943a263332f89e9b2eeb0dde36c8 155 PIRSF PIRSF000239 2 155 8.4E-25 T 23-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 NIDE_RS07360 fb6b943a263332f89e9b2eeb0dde36c8 155 Pfam PF00578 AhpC/TSA family 7 135 6.0E-41 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS07360 fb6b943a263332f89e9b2eeb0dde36c8 155 Gene3D G3DSA:3.40.30.10 3 155 4.2E-55 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS07360 fb6b943a263332f89e9b2eeb0dde36c8 155 PANTHER PTHR10681 4 155 2.7E-54 T 23-04-2016 NIDE_RS05685 3b38e96c78c93056ffa688f7c860a119 149 Gene3D G3DSA:1.10.10.410 91 148 1.1E-21 T 23-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal NIDE_RS05685 3b38e96c78c93056ffa688f7c860a119 149 PANTHER PTHR28055:SF1 1 149 4.9E-50 T 23-04-2016 NIDE_RS05685 3b38e96c78c93056ffa688f7c860a119 149 Pfam PF09424 Yqey-like protein 5 147 4.0E-50 T 23-04-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial NIDE_RS05685 3b38e96c78c93056ffa688f7c860a119 149 Gene3D G3DSA:1.10.1510.10 1 90 1.2E-30 T 23-04-2016 NIDE_RS05685 3b38e96c78c93056ffa688f7c860a119 149 PANTHER PTHR28055 1 149 4.9E-50 T 23-04-2016 NIDE_RS05685 3b38e96c78c93056ffa688f7c860a119 149 SUPERFAMILY SSF89095 1 147 3.82E-41 T 23-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 NIDE_RS03730 1e6895b9008c35c4666e4e367a0f7d0c 262 Gene3D G3DSA:3.20.20.60 1 262 2.5E-114 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS03730 1e6895b9008c35c4666e4e367a0f7d0c 262 PANTHER PTHR20881 2 261 4.7E-141 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 NIDE_RS03730 1e6895b9008c35c4666e4e367a0f7d0c 262 Pfam PF02548 Ketopantoate hydroxymethyltransferase 1 256 6.7E-114 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 NIDE_RS03730 1e6895b9008c35c4666e4e367a0f7d0c 262 PIRSF PIRSF000388 1 262 3.5E-111 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 NIDE_RS03730 1e6895b9008c35c4666e4e367a0f7d0c 262 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 5 262 4.0E-102 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 NIDE_RS03730 1e6895b9008c35c4666e4e367a0f7d0c 262 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 1 261 43.166 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 NIDE_RS03730 1e6895b9008c35c4666e4e367a0f7d0c 262 SUPERFAMILY SSF51621 1 261 4.71E-105 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS19395 e478139f894748d8c29e2796039893da 321 SUPERFAMILY SSF49503 35 175 8.2E-36 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS19395 e478139f894748d8c29e2796039893da 321 PANTHER PTHR11709:SF84 33 269 3.3E-29 T 23-04-2016 NIDE_RS19395 e478139f894748d8c29e2796039893da 321 PRINTS PR00695 Copper containing nitrite reductase signature 62 78 1.2E-23 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 NIDE_RS19395 e478139f894748d8c29e2796039893da 321 PRINTS PR00695 Copper containing nitrite reductase signature 138 154 1.2E-23 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 NIDE_RS19395 e478139f894748d8c29e2796039893da 321 PRINTS PR00695 Copper containing nitrite reductase signature 121 136 1.2E-23 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 NIDE_RS19395 e478139f894748d8c29e2796039893da 321 PRINTS PR00695 Copper containing nitrite reductase signature 35 53 1.2E-23 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 NIDE_RS19395 e478139f894748d8c29e2796039893da 321 PRINTS PR00695 Copper containing nitrite reductase signature 80 97 1.2E-23 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 NIDE_RS19395 e478139f894748d8c29e2796039893da 321 Pfam PF07732 Multicopper oxidase 54 156 1.7E-14 T 23-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 NIDE_RS19395 e478139f894748d8c29e2796039893da 321 PANTHER PTHR11709 33 269 3.3E-29 T 23-04-2016 NIDE_RS19395 e478139f894748d8c29e2796039893da 321 SUPERFAMILY SSF49503 159 309 3.54E-35 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS19395 e478139f894748d8c29e2796039893da 321 Gene3D G3DSA:2.60.40.420 152 294 6.9E-31 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS19395 e478139f894748d8c29e2796039893da 321 Gene3D G3DSA:2.60.40.420 31 151 1.8E-29 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS15175 9c7c3f2e41b68271240f96facf0531fb 376 Pfam PF02687 FtsX-like permease family 260 371 8.6E-15 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS15175 9c7c3f2e41b68271240f96facf0531fb 376 PANTHER PTHR30489 1 376 5.5E-32 T 23-04-2016 NIDE_RS09920 c8e46809bd8a221e0d4b12804e17c7f6 124 PANTHER PTHR30558:SF3 3 121 1.0E-17 T 23-04-2016 NIDE_RS09920 c8e46809bd8a221e0d4b12804e17c7f6 124 PANTHER PTHR30558 3 121 1.0E-17 T 23-04-2016 NIDE_RS09920 c8e46809bd8a221e0d4b12804e17c7f6 124 Pfam PF02472 Biopolymer transport protein ExbD/TolR 4 120 4.4E-18 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 NIDE_RS07970 223d4cefee59c1dff6957641ff1823aa 243 SUPERFAMILY SSF52467 6 242 2.4E-80 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS07970 223d4cefee59c1dff6957641ff1823aa 243 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 18 242 54.825 T 23-04-2016 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 NIDE_RS07970 223d4cefee59c1dff6957641ff1823aa 243 Gene3D G3DSA:3.30.1600.10 123 166 2.4E-30 T 23-04-2016 IPR026591 Sirtuin family, catalytic core small domain NIDE_RS07970 223d4cefee59c1dff6957641ff1823aa 243 Gene3D G3DSA:3.30.1600.10 34 73 2.4E-30 T 23-04-2016 IPR026591 Sirtuin family, catalytic core small domain NIDE_RS07970 223d4cefee59c1dff6957641ff1823aa 243 Gene3D G3DSA:3.40.50.1220 81 122 9.1E-42 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS07970 223d4cefee59c1dff6957641ff1823aa 243 Gene3D G3DSA:3.40.50.1220 175 241 9.1E-42 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS07970 223d4cefee59c1dff6957641ff1823aa 243 Gene3D G3DSA:3.40.50.1220 10 33 9.1E-42 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain NIDE_RS07970 223d4cefee59c1dff6957641ff1823aa 243 Pfam PF02146 Sir2 family 25 196 5.2E-52 T 23-04-2016 IPR003000 Sirtuin family GO:0070403 NIDE_RS07970 223d4cefee59c1dff6957641ff1823aa 243 PANTHER PTHR11085 6 243 9.2E-98 T 23-04-2016 IPR003000 Sirtuin family GO:0070403 NIDE_RS00685 4cd56a91287adbed89d2f42dcf7fb265 257 PANTHER PTHR10788 23 252 2.5E-20 T 23-04-2016 NIDE_RS00685 4cd56a91287adbed89d2f42dcf7fb265 257 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 23 218 4.4E-16 T 23-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 NIDE_RS00685 4cd56a91287adbed89d2f42dcf7fb265 257 Gene3D G3DSA:3.40.50.1000 170 250 2.5E-31 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS00685 4cd56a91287adbed89d2f42dcf7fb265 257 Gene3D G3DSA:3.40.50.1000 23 95 2.5E-31 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS00685 4cd56a91287adbed89d2f42dcf7fb265 257 Pfam PF02358 Trehalose-phosphatase 26 216 3.5E-28 T 23-04-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 NIDE_RS00685 4cd56a91287adbed89d2f42dcf7fb265 257 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 22 248 6.9E-35 T 23-04-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 NIDE_RS00685 4cd56a91287adbed89d2f42dcf7fb265 257 SUPERFAMILY SSF56784 23 247 4.23E-26 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS08260 20fc2a1abf8556cc2c6eba5edf6548da 267 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 251 3.8E-10 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS08260 20fc2a1abf8556cc2c6eba5edf6548da 267 Gene3D G3DSA:1.10.3720.10 1 253 6.1E-45 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS08260 20fc2a1abf8556cc2c6eba5edf6548da 267 SUPERFAMILY SSF161098 2 252 9.38E-50 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS08260 20fc2a1abf8556cc2c6eba5edf6548da 267 PANTHER PTHR30193 1 255 3.1E-109 T 23-04-2016 NIDE_RS08260 20fc2a1abf8556cc2c6eba5edf6548da 267 PANTHER PTHR30193:SF10 1 255 3.1E-109 T 23-04-2016 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 SMART SM00065 355 509 9.6E-14 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 725 743 1.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 691 705 1.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 749 762 1.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 709 719 1.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 Gene3D G3DSA:3.30.565.10 593 765 3.4E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 Gene3D G3DSA:3.30.450.40 343 507 3.8E-26 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 Pfam PF00672 HAMP domain 253 321 6.0E-14 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 SUPERFAMILY SSF55874 596 763 1.57E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 654 764 1.5E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 PANTHER PTHR24423 266 322 3.4E-80 T 23-04-2016 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 PANTHER PTHR24423 29 35 3.4E-80 T 23-04-2016 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 PANTHER PTHR24423 537 767 3.4E-80 T 23-04-2016 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 Pfam PF00512 His Kinase A (phospho-acceptor) domain 540 605 2.7E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 SMART SM00387 653 765 3.6E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 SMART SM00388 539 607 2.6E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 SUPERFAMILY SSF47384 524 608 8.44E-23 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 SUPERFAMILY SSF55781 339 522 1.68E-22 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 Gene3D G3DSA:1.10.287.130 531 592 1.4E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 SUPERFAMILY SSF158472 272 321 2.75E-9 T 23-04-2016 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 SMART SM00304 272 324 1.3E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS02510 391ad3a49c2f4ecdde61097e64a43d0c 771 Pfam PF01590 GAF domain 355 499 7.8E-14 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS20795 4d80cb6125ab555753b07ef4ef2e9ef2 160 Pfam PF05991 YacP-like NYN domain 8 131 2.1E-26 T 23-04-2016 IPR010298 Protein of unknown function DUF901 NIDE_RS20795 4d80cb6125ab555753b07ef4ef2e9ef2 160 PANTHER PTHR34547 8 112 4.0E-16 T 23-04-2016 NIDE_RS13855 e834edf821e46311c3ef5dd1987ce911 367 PANTHER PTHR12526 1 365 9.7E-64 T 23-04-2016 NIDE_RS13855 e834edf821e46311c3ef5dd1987ce911 367 Pfam PF13439 Glycosyltransferase Family 4 15 168 3.5E-15 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS13855 e834edf821e46311c3ef5dd1987ce911 367 Pfam PF00534 Glycosyl transferases group 1 191 342 2.4E-31 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS13855 e834edf821e46311c3ef5dd1987ce911 367 Gene3D G3DSA:3.40.50.2000 151 343 5.9E-32 T 23-04-2016 NIDE_RS13855 e834edf821e46311c3ef5dd1987ce911 367 SUPERFAMILY SSF53756 13 366 4.08E-74 T 23-04-2016 NIDE_RS14440 109fb657347a84ad2c08c17b7ca33da5 588 Gene3D G3DSA:2.40.160.10 104 292 8.7E-39 T 23-04-2016 IPR023614 Porin domain NIDE_RS14440 109fb657347a84ad2c08c17b7ca33da5 588 Gene3D G3DSA:2.40.160.10 324 544 8.7E-39 T 23-04-2016 IPR023614 Porin domain NIDE_RS14440 109fb657347a84ad2c08c17b7ca33da5 588 SUPERFAMILY SSF56935 165 291 1.65E-7 T 23-04-2016 NIDE_RS14440 109fb657347a84ad2c08c17b7ca33da5 588 SUPERFAMILY SSF56935 361 540 1.65E-7 T 23-04-2016 NIDE_RS14440 109fb657347a84ad2c08c17b7ca33da5 588 Pfam PF07396 Phosphate-selective porin O and P 155 265 1.4E-6 T 23-04-2016 IPR010870 Phosphate-selective porin O/P NIDE_RS14920 fbeba65be8a69c72bf0abc76c0dcce3b 679 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 4 678 1.6E-260 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 NIDE_RS14920 fbeba65be8a69c72bf0abc76c0dcce3b 679 Pfam PF03030 Inorganic H+ pyrophosphatase 11 673 2.0E-260 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 NIDE_RS14920 fbeba65be8a69c72bf0abc76c0dcce3b 679 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1 678 24.943 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 NIDE_RS14920 fbeba65be8a69c72bf0abc76c0dcce3b 679 PANTHER PTHR31998 1 679 0.0 T 23-04-2016 NIDE_RS14920 fbeba65be8a69c72bf0abc76c0dcce3b 679 PANTHER PTHR31998:SF0 1 679 0.0 T 23-04-2016 NIDE_RS14920 fbeba65be8a69c72bf0abc76c0dcce3b 679 PIRSF PIRSF001265 1 679 9.3E-259 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 NIDE_RS04665 e368690d592380701134b21678604a53 343 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 64 87 2.3E-58 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 NIDE_RS04665 e368690d592380701134b21678604a53 343 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 182 202 2.3E-58 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 NIDE_RS04665 e368690d592380701134b21678604a53 343 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 295 321 2.3E-58 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 NIDE_RS04665 e368690d592380701134b21678604a53 343 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 44 62 2.3E-58 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 NIDE_RS04665 e368690d592380701134b21678604a53 343 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 127 146 2.3E-58 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 NIDE_RS04665 e368690d592380701134b21678604a53 343 SUPERFAMILY SSF53067 144 328 1.61E-50 T 23-04-2016 NIDE_RS04665 e368690d592380701134b21678604a53 343 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 5 331 1.2E-151 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 NIDE_RS04665 e368690d592380701134b21678604a53 343 Gene3D G3DSA:3.90.640.10 182 254 5.3E-32 T 23-04-2016 NIDE_RS04665 e368690d592380701134b21678604a53 343 Pfam PF06723 MreB/Mbl protein 6 330 5.9E-150 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 NIDE_RS04665 e368690d592380701134b21678604a53 343 PANTHER PTHR19375:SF117 5 321 3.3E-168 T 23-04-2016 NIDE_RS04665 e368690d592380701134b21678604a53 343 Gene3D G3DSA:3.30.420.40 155 181 9.4E-35 T 23-04-2016 NIDE_RS04665 e368690d592380701134b21678604a53 343 Gene3D G3DSA:3.30.420.40 258 312 9.4E-35 T 23-04-2016 NIDE_RS04665 e368690d592380701134b21678604a53 343 SUPERFAMILY SSF53067 5 143 6.29E-42 T 23-04-2016 NIDE_RS04665 e368690d592380701134b21678604a53 343 PANTHER PTHR19375 5 321 3.3E-168 T 23-04-2016 NIDE_RS04665 e368690d592380701134b21678604a53 343 SMART SM00268 6 340 0.0012 T 23-04-2016 IPR004000 Actin family NIDE_RS04665 e368690d592380701134b21678604a53 343 Gene3D G3DSA:3.30.420.40 6 154 9.9E-48 T 23-04-2016 NIDE_RS13935 05547b60d046d42cfeb2390ad9840351 178 PANTHER PTHR35089 4 178 1.8E-20 T 23-04-2016 NIDE_RS13935 05547b60d046d42cfeb2390ad9840351 178 SMART SM00935 15 174 7.7E-29 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 NIDE_RS13935 05547b60d046d42cfeb2390ad9840351 178 SUPERFAMILY SSF111384 29 173 8.5E-23 T 23-04-2016 IPR024930 Skp domain NIDE_RS13935 05547b60d046d42cfeb2390ad9840351 178 Gene3D G3DSA:3.30.910.20 100 172 9.1E-16 T 23-04-2016 NIDE_RS13935 05547b60d046d42cfeb2390ad9840351 178 Gene3D G3DSA:3.30.910.20 18 64 9.1E-16 T 23-04-2016 NIDE_RS13935 05547b60d046d42cfeb2390ad9840351 178 Pfam PF03938 Outer membrane protein (OmpH-like) 15 172 1.2E-27 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 NIDE_RS16565 4fab8e5e6467c51612d7e3c9048cac0b 213 Gene3D G3DSA:2.40.160.20 48 213 9.1E-8 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS16565 4fab8e5e6467c51612d7e3c9048cac0b 213 SUPERFAMILY SSF56925 43 213 2.22E-11 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS16645 9e73af96ffec0ea622dcba5247fa0f07 227 PANTHER PTHR10286 1 216 6.2E-65 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 NIDE_RS16645 9e73af96ffec0ea622dcba5247fa0f07 227 Pfam PF00719 Inorganic pyrophosphatase 38 211 4.6E-44 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 NIDE_RS16645 9e73af96ffec0ea622dcba5247fa0f07 227 Gene3D G3DSA:3.90.80.10 18 214 6.0E-54 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 NIDE_RS16645 9e73af96ffec0ea622dcba5247fa0f07 227 PANTHER PTHR10286:SF0 1 216 6.2E-65 T 23-04-2016 NIDE_RS16645 9e73af96ffec0ea622dcba5247fa0f07 227 SUPERFAMILY SSF50324 18 213 1.83E-53 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 NIDE_RS16645 9e73af96ffec0ea622dcba5247fa0f07 227 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 102 108 - T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 NIDE_RS15245 60e53809b6f2e84ec637d3413af6e2e0 265 PIRSF PIRSF006648 2 257 4.1E-16 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS15245 60e53809b6f2e84ec637d3413af6e2e0 265 Pfam PF01061 ABC-2 type transporter 28 218 9.4E-12 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 NIDE_RS05840 4ff4da97a1d94201fba33270083535bd 164 PANTHER PTHR24423:SF458 10 142 1.1E-25 T 23-04-2016 NIDE_RS05840 4ff4da97a1d94201fba33270083535bd 164 SUPERFAMILY SSF52172 10 143 2.42E-21 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS05840 4ff4da97a1d94201fba33270083535bd 164 SMART SM00448 9 136 1.1E-12 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05840 4ff4da97a1d94201fba33270083535bd 164 Gene3D G3DSA:3.40.50.2300 10 149 4.1E-23 T 23-04-2016 NIDE_RS05840 4ff4da97a1d94201fba33270083535bd 164 Pfam PF00072 Response regulator receiver domain 11 65 1.5E-5 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05840 4ff4da97a1d94201fba33270083535bd 164 PANTHER PTHR24423 10 142 1.1E-25 T 23-04-2016 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 380 406 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 Pfam PF04539 Sigma-70 region 3 267 340 6.4E-18 T 23-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 SUPERFAMILY SSF88659 261 333 2.13E-13 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 212 225 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 PANTHER PTHR30603 132 413 4.0E-121 T 23-04-2016 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 PANTHER PTHR30603 2 111 4.0E-121 T 23-04-2016 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 SUPERFAMILY SSF88946 67 258 9.42E-44 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 184 409 1.2E-36 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 PANTHER PTHR30603:SF0 132 413 4.0E-121 T 23-04-2016 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 PANTHER PTHR30603:SF0 2 111 4.0E-121 T 23-04-2016 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 Gene3D G3DSA:1.10.601.10 61 257 7.8E-50 T 23-04-2016 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 Gene3D G3DSA:1.10.10.10 261 312 1.1E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 Gene3D G3DSA:1.10.10.10 351 413 3.2E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 Pfam PF04542 Sigma-70 region 2 188 258 3.3E-21 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 Pfam PF04545 Sigma-70, region 4 356 407 2.3E-18 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 SUPERFAMILY SSF88659 322 412 1.36E-24 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 PRINTS PR00046 Major sigma-70 factor signature 212 225 2.5E-29 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 PRINTS PR00046 Major sigma-70 factor signature 395 406 2.5E-29 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 PRINTS PR00046 Major sigma-70 factor signature 236 244 2.5E-29 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 PRINTS PR00046 Major sigma-70 factor signature 359 371 2.5E-29 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02055 0e2cdb254cdb332a95f582a720d61d32 419 PRINTS PR00046 Major sigma-70 factor signature 380 395 2.5E-29 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS21140 0817b5cc3b6ed22e7910231d143a3a18 192 Pfam PF03592 Terminase small subunit 12 164 3.1E-9 T 23-04-2016 IPR005335 Terminase small subunit GO:0006323 NIDE_RS19145 29877744883f6e4a7a61f04a21f0c6b6 324 SMART SM00448 8 120 0.0047 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS19145 29877744883f6e4a7a61f04a21f0c6b6 324 Gene3D G3DSA:3.30.70.270 134 233 4.9E-19 T 23-04-2016 NIDE_RS19145 29877744883f6e4a7a61f04a21f0c6b6 324 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 147 219 5.5E-13 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS19145 29877744883f6e4a7a61f04a21f0c6b6 324 SMART SM00267 124 283 3.8E-7 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS19145 29877744883f6e4a7a61f04a21f0c6b6 324 SUPERFAMILY SSF55073 136 305 1.33E-18 T 23-04-2016 IPR029787 Nucleotide cyclase NIDE_RS19145 29877744883f6e4a7a61f04a21f0c6b6 324 Pfam PF00990 Diguanylate cyclase, GGDEF domain 135 221 3.1E-13 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS19145 29877744883f6e4a7a61f04a21f0c6b6 324 Gene3D G3DSA:3.40.50.2300 4 126 2.0E-10 T 23-04-2016 NIDE_RS19145 29877744883f6e4a7a61f04a21f0c6b6 324 SUPERFAMILY SSF52172 6 132 7.12E-13 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS07890 c57edf9f182a668d4cce54a5616b805c 101 Gene3D G3DSA:1.10.260.40 3 87 7.0E-33 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS07890 c57edf9f182a668d4cce54a5616b805c 101 SUPERFAMILY SSF47413 9 91 3.52E-20 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS07890 c57edf9f182a668d4cce54a5616b805c 101 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 4 87 3.1E-28 T 23-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 NIDE_RS07890 c57edf9f182a668d4cce54a5616b805c 101 SMART SM00530 13 69 0.0075 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS07890 c57edf9f182a668d4cce54a5616b805c 101 Pfam PF01381 Helix-turn-helix 21 64 2.4E-8 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS07890 c57edf9f182a668d4cce54a5616b805c 101 PANTHER PTHR36924:SF2 1 87 7.3E-17 T 23-04-2016 NIDE_RS07890 c57edf9f182a668d4cce54a5616b805c 101 PANTHER PTHR36924 1 87 7.3E-17 T 23-04-2016 NIDE_RS01480 cd1a547db0e401675ddb229c772b6415 408 SMART SM01204 235 379 2.2E-31 T 23-04-2016 IPR019494 FIST, C-domain NIDE_RS01480 cd1a547db0e401675ddb229c772b6415 408 PANTHER PTHR14939:SF5 20 406 1.2E-50 T 23-04-2016 NIDE_RS01480 cd1a547db0e401675ddb229c772b6415 408 PIRSF PIRSF018953 2 402 4.1E-126 T 23-04-2016 IPR016741 Uncharacterised conserved protein UCP018953 NIDE_RS01480 cd1a547db0e401675ddb229c772b6415 408 PANTHER PTHR14939 20 406 1.2E-50 T 23-04-2016 NIDE_RS01480 cd1a547db0e401675ddb229c772b6415 408 Pfam PF10442 FIST C domain 235 378 1.8E-27 T 23-04-2016 IPR019494 FIST, C-domain NIDE_RS01480 cd1a547db0e401675ddb229c772b6415 408 Pfam PF08495 FIST N domain 43 232 2.0E-34 T 23-04-2016 IPR013702 FIST domain, N-terminal NIDE_RS01480 cd1a547db0e401675ddb229c772b6415 408 SMART SM00897 40 234 1.5E-42 T 23-04-2016 IPR013702 FIST domain, N-terminal NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 Gene3D G3DSA:1.10.260.40 6 41 4.1E-7 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 TIGRFAM TIGR00498 lexA: repressor LexA 15 179 5.0E-38 T 23-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 SUPERFAMILY SSF51306 58 177 8.55E-28 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 Pfam PF00717 Peptidase S24-like 95 158 1.5E-11 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 103 114 8.3E-7 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 92 102 8.3E-7 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 131 143 8.3E-7 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 PANTHER PTHR33516:SF2 12 181 1.9E-39 T 23-04-2016 NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 Gene3D G3DSA:2.10.109.10 58 179 1.8E-36 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 SUPERFAMILY SSF47413 1 52 1.29E-6 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS10300 f7a3eaffe58b07c0745cf2c756b45104 181 PANTHER PTHR33516 12 181 1.9E-39 T 23-04-2016 NIDE_RS12195 92040162f7f7469c913e40d985944ab9 523 SUPERFAMILY SSF52540 8 245 2.07E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12195 92040162f7f7469c913e40d985944ab9 523 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 11 513 1.0E-150 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 NIDE_RS12195 92040162f7f7469c913e40d985944ab9 523 PANTHER PTHR21343 6 517 3.6E-194 T 23-04-2016 NIDE_RS12195 92040162f7f7469c913e40d985944ab9 523 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 520 174.222 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 NIDE_RS12195 92040162f7f7469c913e40d985944ab9 523 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 261 461 3.7E-48 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 NIDE_RS12195 92040162f7f7469c913e40d985944ab9 523 Gene3D G3DSA:3.40.50.300 8 244 4.3E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12195 92040162f7f7469c913e40d985944ab9 523 SUPERFAMILY SSF52317 262 473 6.31E-31 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS12195 92040162f7f7469c913e40d985944ab9 523 PANTHER PTHR21343:SF1 6 517 3.6E-194 T 23-04-2016 NIDE_RS12195 92040162f7f7469c913e40d985944ab9 523 Gene3D G3DSA:3.40.50.880 260 476 2.1E-28 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS12195 92040162f7f7469c913e40d985944ab9 523 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 10 239 1.0E-28 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 PANTHER PTHR11772 467 631 6.3E-119 T 23-04-2016 NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 PANTHER PTHR11772 2 388 6.3E-119 T 23-04-2016 NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 Pfam PF00733 Asparagine synthase 240 618 3.5E-68 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 PANTHER PTHR11772:SF10 467 631 6.3E-119 T 23-04-2016 NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 PANTHER PTHR11772:SF10 2 388 6.3E-119 T 23-04-2016 NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 Pfam PF13537 Glutamine amidotransferase domain 48 167 9.0E-47 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 556 9.6E-129 T 23-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 SUPERFAMILY SSF56235 1 219 4.55E-59 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 Gene3D G3DSA:3.40.50.620 224 412 3.1E-60 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 Gene3D G3DSA:3.40.50.620 471 619 3.1E-60 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 PIRSF PIRSF001589 1 629 2.3E-136 T 23-04-2016 NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 SUPERFAMILY SSF52402 475 613 2.3E-53 T 23-04-2016 NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 SUPERFAMILY SSF52402 238 386 2.3E-53 T 23-04-2016 NIDE_RS13135 193e7e8483dc0f123b916d07a2b94de2 631 Gene3D G3DSA:3.60.20.10 1 223 2.0E-69 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS04370 bc1c9d82c6ed492e3bc4e879b4861d3e 583 SUPERFAMILY SSF52540 211 457 1.06E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04370 bc1c9d82c6ed492e3bc4e879b4861d3e 583 ProSitePatterns PS00674 AAA-protein family signature. 386 404 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 NIDE_RS04370 bc1c9d82c6ed492e3bc4e879b4861d3e 583 SMART SM00382 254 418 1.0E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS04370 bc1c9d82c6ed492e3bc4e879b4861d3e 583 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 259 415 1.9E-31 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS04370 bc1c9d82c6ed492e3bc4e879b4861d3e 583 Gene3D G3DSA:3.40.50.300 209 431 1.3E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04370 bc1c9d82c6ed492e3bc4e879b4861d3e 583 Pfam PF16450 Proteasomal ATPase OB/ID domain 86 215 4.5E-30 T 23-04-2016 IPR032501 Proteasomal ATPase, OB/ID domain NIDE_RS04370 bc1c9d82c6ed492e3bc4e879b4861d3e 583 PANTHER PTHR23077 306 426 2.5E-67 T 23-04-2016 NIDE_RS04370 bc1c9d82c6ed492e3bc4e879b4861d3e 583 PANTHER PTHR23077 214 282 2.5E-67 T 23-04-2016 NIDE_RS20515 336bac8a1b41df070c027deecfddc03b 265 SUPERFAMILY SSF53955 14 50 1.79E-5 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS20515 336bac8a1b41df070c027deecfddc03b 265 PANTHER PTHR38107:SF2 147 198 2.3E-21 T 23-04-2016 NIDE_RS20515 336bac8a1b41df070c027deecfddc03b 265 PANTHER PTHR38107:SF2 215 252 2.3E-21 T 23-04-2016 NIDE_RS20515 336bac8a1b41df070c027deecfddc03b 265 PANTHER PTHR38107 147 198 2.3E-21 T 23-04-2016 NIDE_RS20515 336bac8a1b41df070c027deecfddc03b 265 PANTHER PTHR38107 215 252 2.3E-21 T 23-04-2016 NIDE_RS20515 336bac8a1b41df070c027deecfddc03b 265 SUPERFAMILY SSF53955 143 249 9.21E-23 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS20515 336bac8a1b41df070c027deecfddc03b 265 Gene3D G3DSA:1.10.530.40 14 60 5.5E-53 T 23-04-2016 IPR023347 Lysozyme domain GO:0003796 NIDE_RS20515 336bac8a1b41df070c027deecfddc03b 265 Gene3D G3DSA:1.10.530.40 130 250 5.5E-53 T 23-04-2016 IPR023347 Lysozyme domain GO:0003796 NIDE_RS20515 336bac8a1b41df070c027deecfddc03b 265 Pfam PF00959 Phage lysozyme 143 240 4.8E-10 T 23-04-2016 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 NIDE_RS11255 0ca1f17aad35d46039ae284a20b69d5c 286 Gene3D G3DSA:3.40.50.10330 3 145 3.9E-38 T 23-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 NIDE_RS11255 0ca1f17aad35d46039ae284a20b69d5c 286 SUPERFAMILY SSF111331 5 284 4.58E-87 T 23-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain NIDE_RS11255 0ca1f17aad35d46039ae284a20b69d5c 286 PANTHER PTHR20275 1 284 1.1E-87 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 NIDE_RS11255 0ca1f17aad35d46039ae284a20b69d5c 286 Pfam PF01513 ATP-NAD kinase 53 267 3.5E-62 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 NIDE_RS11255 0ca1f17aad35d46039ae284a20b69d5c 286 Gene3D G3DSA:2.60.200.30 146 257 7.4E-42 T 23-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 NIDE_RS11255 0ca1f17aad35d46039ae284a20b69d5c 286 Hamap MF_00361 NAD kinase [nadK]. 4 283 33.173 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 NIDE_RS11970 db6b74117a2eb3cfe1c2fb6aa300c137 198 PANTHER PTHR15362:SF2 1 145 7.1E-37 T 23-04-2016 NIDE_RS11970 db6b74117a2eb3cfe1c2fb6aa300c137 198 Pfam PF01066 CDP-alcohol phosphatidyltransferase 7 77 1.7E-14 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NIDE_RS11970 db6b74117a2eb3cfe1c2fb6aa300c137 198 PANTHER PTHR15362 1 145 7.1E-37 T 23-04-2016 NIDE_RS11970 db6b74117a2eb3cfe1c2fb6aa300c137 198 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 55 77 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NIDE_RS18045 0f4fc1e9e0244df6a9ea2b766b0ff9d6 351 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 83 260 5.6E-30 T 23-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG NIDE_RS18045 0f4fc1e9e0244df6a9ea2b766b0ff9d6 351 SUPERFAMILY SSF102405 70 258 1.68E-43 T 23-04-2016 NIDE_RS18045 0f4fc1e9e0244df6a9ea2b766b0ff9d6 351 PANTHER PTHR31223 26 302 7.7E-110 T 23-04-2016 NIDE_RS18045 0f4fc1e9e0244df6a9ea2b766b0ff9d6 351 PANTHER PTHR31223:SF1 26 302 7.7E-110 T 23-04-2016 NIDE_RS18045 0f4fc1e9e0244df6a9ea2b766b0ff9d6 351 Gene3D G3DSA:3.40.50.450 58 345 8.9E-65 T 23-04-2016 NIDE_RS18045 0f4fc1e9e0244df6a9ea2b766b0ff9d6 351 Pfam PF03641 Possible lysine decarboxylase 126 258 2.4E-24 T 23-04-2016 IPR031100 LOG family NIDE_RS16020 0a6d19797e762bfae2442b9d72d92240 182 Gene3D G3DSA:1.20.1440.20 11 182 4.3E-61 T 23-04-2016 IPR023353 LemA-like domain NIDE_RS16020 0a6d19797e762bfae2442b9d72d92240 182 Pfam PF04011 LemA family 4 182 2.1E-66 T 23-04-2016 IPR007156 LemA NIDE_RS16020 0a6d19797e762bfae2442b9d72d92240 182 SUPERFAMILY SSF140478 23 170 9.15E-49 T 23-04-2016 IPR023353 LemA-like domain NIDE_RS16020 0a6d19797e762bfae2442b9d72d92240 182 PANTHER PTHR34478 1 182 1.4E-68 T 23-04-2016 NIDE_RS16020 0a6d19797e762bfae2442b9d72d92240 182 PANTHER PTHR34478:SF1 1 182 1.4E-68 T 23-04-2016 NIDE_RS17380 f4fa930e8187f3b5fd8d335936dafd43 374 SUPERFAMILY SSF55729 178 355 2.38E-20 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS17380 f4fa930e8187f3b5fd8d335936dafd43 374 Pfam PF13480 Acetyltransferase (GNAT) domain 187 335 9.4E-37 T 23-04-2016 NIDE_RS19840 7550bdfbebac0c0bb6ecad0235a92658 354 PANTHER PTHR21535:SF33 62 354 1.1E-74 T 23-04-2016 NIDE_RS19840 7550bdfbebac0c0bb6ecad0235a92658 354 SUPERFAMILY SSF144083 289 352 2.22E-22 T 23-04-2016 NIDE_RS19840 7550bdfbebac0c0bb6ecad0235a92658 354 Gene3D G3DSA:1.20.58.340 164 276 9.8E-41 T 23-04-2016 NIDE_RS19840 7550bdfbebac0c0bb6ecad0235a92658 354 SUPERFAMILY SSF143865 12 287 7.19E-77 T 23-04-2016 NIDE_RS19840 7550bdfbebac0c0bb6ecad0235a92658 354 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 54 354 3.5E-98 T 23-04-2016 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 NIDE_RS19840 7550bdfbebac0c0bb6ecad0235a92658 354 Gene3D G3DSA:3.30.460.20 4 163 2.7E-42 T 23-04-2016 NIDE_RS19840 7550bdfbebac0c0bb6ecad0235a92658 354 Gene3D G3DSA:1.20.58.340 277 354 4.2E-32 T 23-04-2016 NIDE_RS19840 7550bdfbebac0c0bb6ecad0235a92658 354 Pfam PF01544 CorA-like Mg2+ transporter protein 61 349 6.4E-70 T 23-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 NIDE_RS19840 7550bdfbebac0c0bb6ecad0235a92658 354 PANTHER PTHR21535 62 354 1.1E-74 T 23-04-2016 NIDE_RS15180 67df55cc555453ab7b89b7d023eabf22 252 PANTHER PTHR24220:SF86 24 241 3.9E-77 T 23-04-2016 NIDE_RS15180 67df55cc555453ab7b89b7d023eabf22 252 Pfam PF00005 ABC transporter 42 191 5.2E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS15180 67df55cc555453ab7b89b7d023eabf22 252 SUPERFAMILY SSF52540 23 246 4.26E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15180 67df55cc555453ab7b89b7d023eabf22 252 SMART SM00382 51 247 3.2E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS15180 67df55cc555453ab7b89b7d023eabf22 252 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS15180 67df55cc555453ab7b89b7d023eabf22 252 PANTHER PTHR24220 24 241 3.9E-77 T 23-04-2016 NIDE_RS15180 67df55cc555453ab7b89b7d023eabf22 252 Gene3D G3DSA:3.40.50.300 22 243 4.5E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19005 7d1cb633e13911b6fb66885b389cfb6d 81 Pfam PF01206 Sulfurtransferase TusA 7 79 8.8E-21 T 23-04-2016 IPR001455 TusA-like domain NIDE_RS19005 7d1cb633e13911b6fb66885b389cfb6d 81 PANTHER PTHR33279 1 68 4.4E-19 T 23-04-2016 NIDE_RS19005 7d1cb633e13911b6fb66885b389cfb6d 81 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 8 32 - T 23-04-2016 IPR001455 TusA-like domain NIDE_RS19005 7d1cb633e13911b6fb66885b389cfb6d 81 Gene3D G3DSA:3.30.110.40 2 79 1.1E-27 T 23-04-2016 IPR001455 TusA-like domain NIDE_RS19005 7d1cb633e13911b6fb66885b389cfb6d 81 SUPERFAMILY SSF64307 2 67 3.92E-22 T 23-04-2016 IPR001455 TusA-like domain NIDE_RS11330 8537919799db3f8e829a1639637ee6d7 254 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 174 1.7E-48 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 NIDE_RS11330 8537919799db3f8e829a1639637ee6d7 254 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 209 27.207 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 NIDE_RS11330 8537919799db3f8e829a1639637ee6d7 254 Gene3D G3DSA:3.40.50.300 1 215 6.3E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11330 8537919799db3f8e829a1639637ee6d7 254 SUPERFAMILY SSF52540 1 214 1.45E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11330 8537919799db3f8e829a1639637ee6d7 254 PANTHER PTHR21343 1 209 2.8E-55 T 23-04-2016 NIDE_RS11330 8537919799db3f8e829a1639637ee6d7 254 PIRSF PIRSF006755 1 226 1.5E-55 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 NIDE_RS11330 8537919799db3f8e829a1639637ee6d7 254 PANTHER PTHR21343:SF0 1 209 2.8E-55 T 23-04-2016 NIDE_RS11330 8537919799db3f8e829a1639637ee6d7 254 Pfam PF13500 AAA domain 4 214 6.0E-46 T 23-04-2016 NIDE_RS08470 51ca3c21275dace1165c1f2d3558d7a3 97 PANTHER PTHR33473 6 92 9.8E-13 T 23-04-2016 NIDE_RS08470 51ca3c21275dace1165c1f2d3558d7a3 97 Gene3D G3DSA:3.30.1390.10 16 87 1.1E-10 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like NIDE_RS08470 51ca3c21275dace1165c1f2d3558d7a3 97 SUPERFAMILY SSF54736 26 96 9.94E-12 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like NIDE_RS08470 51ca3c21275dace1165c1f2d3558d7a3 97 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 27 85 9.8E-11 T 23-04-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 NIDE_RS08470 51ca3c21275dace1165c1f2d3558d7a3 97 PANTHER PTHR33473:SF3 6 92 9.8E-13 T 23-04-2016 NIDE_RS09695 4f233ed4b58747185af8375e11b7b45d 99 PANTHER PTHR33215:SF2 1 96 1.5E-47 T 23-04-2016 NIDE_RS09695 4f233ed4b58747185af8375e11b7b45d 99 PANTHER PTHR33215 1 96 1.5E-47 T 23-04-2016 NIDE_RS09695 4f233ed4b58747185af8375e11b7b45d 99 Gene3D G3DSA:1.10.10.10 2 50 2.4E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS09695 4f233ed4b58747185af8375e11b7b45d 99 SUPERFAMILY SSF48295 1 58 2.82E-10 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 NIDE_RS07685 892d8ad57758485f6c87b3fa79ed4d8a 156 Pfam PF01381 Helix-turn-helix 8 62 7.0E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS07685 892d8ad57758485f6c87b3fa79ed4d8a 156 SUPERFAMILY SSF47413 3 66 5.91E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS07685 892d8ad57758485f6c87b3fa79ed4d8a 156 Gene3D G3DSA:1.10.260.40 4 79 1.0E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS07685 892d8ad57758485f6c87b3fa79ed4d8a 156 SMART SM00530 7 62 1.0E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS04345 b9e577f411612d011ae3e42699b050dc 149 SUPERFAMILY SSF54197 6 137 1.66E-29 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 NIDE_RS04345 b9e577f411612d011ae3e42699b050dc 149 PANTHER PTHR23089 19 140 5.8E-29 T 23-04-2016 IPR001310 Histidine triad (HIT) protein NIDE_RS04345 b9e577f411612d011ae3e42699b050dc 149 Pfam PF01230 HIT domain 17 101 9.1E-10 T 23-04-2016 IPR001310 Histidine triad (HIT) protein NIDE_RS04345 b9e577f411612d011ae3e42699b050dc 149 Gene3D G3DSA:3.30.428.10 3 137 3.0E-31 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 NIDE_RS04345 b9e577f411612d011ae3e42699b050dc 149 PANTHER PTHR23089:SF13 19 140 5.8E-29 T 23-04-2016 NIDE_RS19620 271542e08853156b952ce06f329e9e84 251 Gene3D G3DSA:3.40.50.1110 40 248 2.1E-66 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS19620 271542e08853156b952ce06f329e9e84 251 SUPERFAMILY SSF52266 40 248 9.62E-52 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS19620 271542e08853156b952ce06f329e9e84 251 PANTHER PTHR11852 37 250 4.9E-29 T 23-04-2016 NIDE_RS19620 271542e08853156b952ce06f329e9e84 251 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 70 235 1.3E-28 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS19620 271542e08853156b952ce06f329e9e84 251 PANTHER PTHR11852:SF0 37 250 4.9E-29 T 23-04-2016 NIDE_RS20100 6355da21749df670719415aa1870cd8e 169 Gene3D G3DSA:3.40.50.1400 66 154 1.1E-13 T 23-04-2016 NIDE_RS20100 6355da21749df670719415aa1870cd8e 169 SUPERFAMILY SSF53800 60 154 1.44E-15 T 23-04-2016 NIDE_RS20100 6355da21749df670719415aa1870cd8e 169 SUPERFAMILY SSF53800 6 14 1.44E-15 T 23-04-2016 NIDE_RS20100 6355da21749df670719415aa1870cd8e 169 Pfam PF01903 CbiX 65 153 1.1E-12 T 23-04-2016 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377|UniPathway: UPA00148 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 Gene3D G3DSA:1.25.40.10 72 174 9.2E-25 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 Pfam PF08238 Sel1 repeat 220 254 4.2E-5 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 Pfam PF08238 Sel1 repeat 380 402 12.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 Gene3D G3DSA:1.25.40.10 175 281 4.7E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 Gene3D G3DSA:1.25.40.10 282 403 1.9E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 SUPERFAMILY SSF81901 379 403 3.4E-13 T 23-04-2016 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 SUPERFAMILY SSF81901 184 259 3.4E-13 T 23-04-2016 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 Pfam PF13414 TPR repeat 93 133 8.9E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 Pfam PF13414 TPR repeat 161 198 7.7E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 SUPERFAMILY SSF48452 76 213 6.64E-30 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 SMART SM00671 220 255 9.3E-5 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 SMART SM00671 375 405 100.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 SMART SM00671 154 185 45.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 PANTHER PTHR23083 256 265 2.8E-27 T 23-04-2016 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 PANTHER PTHR23083 76 218 2.8E-27 T 23-04-2016 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 PANTHER PTHR23083 312 346 2.8E-27 T 23-04-2016 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 SMART SM00028 86 119 18.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 SMART SM00028 120 153 0.04 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS04335 ecec3b8d2068edb40967718d801baed9 424 SMART SM00028 154 187 4.1E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20450 d250d9d5a74cfa17ef5b65e94bf91cfd 358 PANTHER PTHR12697:SF5 209 321 1.8E-13 T 23-04-2016 NIDE_RS20450 d250d9d5a74cfa17ef5b65e94bf91cfd 358 PANTHER PTHR12697 209 321 1.8E-13 T 23-04-2016 NIDE_RS20450 d250d9d5a74cfa17ef5b65e94bf91cfd 358 Gene3D G3DSA:1.25.10.10 187 355 1.2E-24 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS20450 d250d9d5a74cfa17ef5b65e94bf91cfd 358 SUPERFAMILY SSF48371 204 323 7.49E-22 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS20450 d250d9d5a74cfa17ef5b65e94bf91cfd 358 SMART SM00567 E-Z type HEAT repeats 261 294 110.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS20450 d250d9d5a74cfa17ef5b65e94bf91cfd 358 SMART SM00567 E-Z type HEAT repeats 296 325 25.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS20450 d250d9d5a74cfa17ef5b65e94bf91cfd 358 SMART SM00567 E-Z type HEAT repeats 230 259 250.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS00780 46cc57f81589913d4f090e67d73cce85 161 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 2.4E-19 T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal NIDE_RS00780 46cc57f81589913d4f090e67d73cce85 161 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal NIDE_RS00780 46cc57f81589913d4f090e67d73cce85 161 Pfam PF03948 Ribosomal protein L9, C-terminal domain 65 145 2.9E-26 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal NIDE_RS00780 46cc57f81589913d4f090e67d73cce85 161 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 147 23.633 T 23-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS00780 46cc57f81589913d4f090e67d73cce85 161 Gene3D G3DSA:3.40.5.10 1 51 1.7E-20 T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal NIDE_RS00780 46cc57f81589913d4f090e67d73cce85 161 SUPERFAMILY SSF55658 1 56 8.37E-16 T 23-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal NIDE_RS00780 46cc57f81589913d4f090e67d73cce85 161 Gene3D G3DSA:3.10.430.100 61 147 2.1E-27 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal NIDE_RS00780 46cc57f81589913d4f090e67d73cce85 161 PANTHER PTHR21368 1 161 2.9E-43 T 23-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS00780 46cc57f81589913d4f090e67d73cce85 161 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 146 3.3E-41 T 23-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS00780 46cc57f81589913d4f090e67d73cce85 161 SUPERFAMILY SSF55653 57 146 6.8E-25 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SUPERFAMILY SSF55785 269 396 5.68E-20 T 23-04-2016 IPR000014 PAS domain NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SUPERFAMILY SSF55785 167 279 7.12E-28 T 23-04-2016 IPR000014 PAS domain NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 Gene3D G3DSA:3.40.50.2300 19 149 2.6E-35 T 23-04-2016 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 Pfam PF08448 PAS fold 290 400 1.9E-19 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 Pfam PF13426 PAS domain 421 516 1.6E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 Gene3D G3DSA:3.30.450.20 402 520 1.4E-20 T 23-04-2016 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 Pfam PF00072 Response regulator receiver domain 22 131 2.1E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 PANTHER PTHR26402:SF578 20 149 2.2E-32 T 23-04-2016 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 PANTHER PTHR26402:SF578 342 347 2.2E-32 T 23-04-2016 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SMART SM00091 156 222 6.0E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SMART SM00091 410 478 0.0024 T 23-04-2016 IPR000014 PAS domain NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SMART SM00091 284 350 0.049 T 23-04-2016 IPR000014 PAS domain NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 Pfam PF00989 PAS fold 157 269 1.3E-15 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SUPERFAMILY SSF52172 18 166 7.83E-38 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SUPERFAMILY SSF55785 395 520 2.58E-22 T 23-04-2016 IPR000014 PAS domain NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 Gene3D G3DSA:3.30.450.20 150 270 1.3E-28 T 23-04-2016 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 Gene3D G3DSA:3.30.450.20 288 401 4.0E-21 T 23-04-2016 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 PANTHER PTHR26402 20 149 2.2E-32 T 23-04-2016 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 PANTHER PTHR26402 342 347 2.2E-32 T 23-04-2016 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SMART SM00086 232 272 13.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SMART SM00086 355 398 2.9 T 23-04-2016 IPR001610 PAC motif NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SMART SM00086 486 523 500.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 SMART SM00448 20 131 5.3E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 153 279 5.5E-29 T 23-04-2016 IPR000014 PAS domain NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 290 405 6.9E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS09450 d4502abd3b70981eaf8d5cabf7ba09a0 527 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 406 520 2.4E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS17420 49a8437efcc6da81a551ea8c22abd54c 151 Pfam PF03703 Bacterial PH domain 66 141 1.2E-14 T 23-04-2016 IPR005182 Domain of unknown function DUF304 NIDE_RS12350 45217e49b60907f70e8adaa940aec194 340 PANTHER PTHR30011 19 325 1.2E-44 T 23-04-2016 NIDE_RS12350 45217e49b60907f70e8adaa940aec194 340 SUPERFAMILY SSF51679 18 325 1.08E-44 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 NIDE_RS12350 45217e49b60907f70e8adaa940aec194 340 Gene3D G3DSA:3.20.20.30 18 326 9.3E-45 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 NIDE_RS12350 45217e49b60907f70e8adaa940aec194 340 Pfam PF00296 Luciferase-like monooxygenase 12 310 1.3E-33 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 NIDE_RS12350 45217e49b60907f70e8adaa940aec194 340 PANTHER PTHR30011:SF1 19 325 1.2E-44 T 23-04-2016 NIDE_RS07215 958cb2d0fc5e9806fb1adce4d0349fbb 422 Pfam PF04286 Protein of unknown function (DUF445) 54 418 1.7E-75 T 23-04-2016 IPR007383 Protein of unknown function DUF445 NIDE_RS07215 958cb2d0fc5e9806fb1adce4d0349fbb 422 PANTHER PTHR38442 14 422 2.2E-87 T 23-04-2016 NIDE_RS15615 b7854a20e34b914867fbcb0a187fe2de 634 Gene3D G3DSA:3.40.50.720 328 503 2.9E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS15615 b7854a20e34b914867fbcb0a187fe2de 634 PANTHER PTHR22604 1 327 6.3E-39 T 23-04-2016 NIDE_RS15615 b7854a20e34b914867fbcb0a187fe2de 634 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 96 6.9E-17 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 NIDE_RS15615 b7854a20e34b914867fbcb0a187fe2de 634 SUPERFAMILY SSF51735 1 125 3.63E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS15615 b7854a20e34b914867fbcb0a187fe2de 634 Gene3D G3DSA:3.30.360.10 269 318 2.1E-8 T 23-04-2016 NIDE_RS15615 b7854a20e34b914867fbcb0a187fe2de 634 Gene3D G3DSA:3.30.360.10 120 219 2.1E-8 T 23-04-2016 NIDE_RS15615 b7854a20e34b914867fbcb0a187fe2de 634 SUPERFAMILY SSF51735 330 613 4.14E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS15615 b7854a20e34b914867fbcb0a187fe2de 634 Pfam PF01370 NAD dependent epimerase/dehydratase family 330 497 8.9E-18 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 NIDE_RS15615 b7854a20e34b914867fbcb0a187fe2de 634 Gene3D G3DSA:3.40.50.720 1 119 1.0E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS05190 9996441eac797fbb6e339e68a43d1130 253 PANTHER PTHR26402 4 153 6.9E-30 T 23-04-2016 NIDE_RS05190 9996441eac797fbb6e339e68a43d1130 253 Gene3D G3DSA:3.30.450.20 131 251 3.2E-17 T 23-04-2016 NIDE_RS05190 9996441eac797fbb6e339e68a43d1130 253 Gene3D G3DSA:3.40.50.2300 2 127 7.7E-35 T 23-04-2016 NIDE_RS05190 9996441eac797fbb6e339e68a43d1130 253 SMART SM00091 134 200 4.8E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS05190 9996441eac797fbb6e339e68a43d1130 253 Pfam PF00072 Response regulator receiver domain 6 116 1.7E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05190 9996441eac797fbb6e339e68a43d1130 253 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 132 251 4.1E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS05190 9996441eac797fbb6e339e68a43d1130 253 SMART SM00448 4 116 1.2E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05190 9996441eac797fbb6e339e68a43d1130 253 SUPERFAMILY SSF55785 124 249 8.55E-16 T 23-04-2016 IPR000014 PAS domain NIDE_RS05190 9996441eac797fbb6e339e68a43d1130 253 SUPERFAMILY SSF52172 3 127 8.4E-35 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS05190 9996441eac797fbb6e339e68a43d1130 253 Pfam PF00989 PAS fold 137 251 8.3E-11 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 162 266 2.1E-42 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 Gene3D G3DSA:1.10.3730.10 161 266 3.3E-47 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 Gene3D G3DSA:3.40.50.720 4 159 1.9E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 SUPERFAMILY SSF48179 161 267 3.91E-39 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 266 1.3E-89 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 PANTHER PTHR11645 6 268 2.8E-118 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 266 28.632 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 PIRSF PIRSF000193 3 268 1.5E-84 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 99 3.5E-21 T 23-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 222 244 - T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 PANTHER PTHR11645:SF28 6 268 2.8E-118 T 23-04-2016 NIDE_RS03535 8e6c8190700dd592b80ef11c174be5db 268 SUPERFAMILY SSF51735 4 159 4.02E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12060 c708957cda1e101c3a63ed4a45319ef6 257 SUPERFAMILY SSF53335 30 194 2.32E-19 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12060 c708957cda1e101c3a63ed4a45319ef6 257 Pfam PF13489 Methyltransferase domain 29 159 3.7E-11 T 23-04-2016 NIDE_RS12060 c708957cda1e101c3a63ed4a45319ef6 257 Gene3D G3DSA:3.40.50.150 216 229 6.5E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12060 c708957cda1e101c3a63ed4a45319ef6 257 Gene3D G3DSA:3.40.50.150 4 149 6.5E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02110 a3bea08f5f09f3779b98bcf86769ea61 84 Pfam PF04221 RelB antitoxin 4 65 1.8E-15 T 23-04-2016 IPR007337 RelB antitoxin/Antitoxin DinJ NIDE_RS02110 a3bea08f5f09f3779b98bcf86769ea61 84 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 1 80 9.8E-17 T 23-04-2016 IPR007337 RelB antitoxin/Antitoxin DinJ NIDE_RS02110 a3bea08f5f09f3779b98bcf86769ea61 84 PIRSF PIRSF003108 1 83 7.7E-17 T 23-04-2016 IPR026262 Antitoxin DinJ GO:0000986|GO:0015643|GO:0044010 NIDE_RS05370 f92bae4d8f743512d82ebe128a6ded47 380 SMART SM00387 282 377 8.6E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05370 f92bae4d8f743512d82ebe128a6ded47 380 PANTHER PTHR24421 172 375 7.5E-45 T 23-04-2016 NIDE_RS05370 f92bae4d8f743512d82ebe128a6ded47 380 PANTHER PTHR24421 40 139 7.5E-45 T 23-04-2016 NIDE_RS05370 f92bae4d8f743512d82ebe128a6ded47 380 SUPERFAMILY SSF55874 250 375 1.2E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05370 f92bae4d8f743512d82ebe128a6ded47 380 Pfam PF07730 Histidine kinase 177 243 1.4E-14 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NIDE_RS05370 f92bae4d8f743512d82ebe128a6ded47 380 Gene3D G3DSA:3.30.565.10 262 376 6.9E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS05370 f92bae4d8f743512d82ebe128a6ded47 380 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 284 376 2.0E-11 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10920 c92fa459f5bf8f8ad88f831d4676e6b5 96 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 81 2.8E-24 T 23-04-2016 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Gene3D G3DSA:3.40.50.980 1147 1304 3.0E-48 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Gene3D G3DSA:3.40.50.980 9 178 3.0E-33 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 SUPERFAMILY SSF56801 8 567 5.89E-117 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Pfam PF00668 Condensation domain 687 987 1.0E-67 T 23-04-2016 IPR001242 Condensation domain NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Gene3D G3DSA:2.30.38.10 1472 1551 3.3E-28 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 ProSitePatterns PS00012 Phosphopantetheine attachment site. 624 639 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 PANTHER PTHR24095:SF137 10 350 0.0 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 PANTHER PTHR24095:SF137 374 1594 0.0 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Gene3D G3DSA:1.10.1200.10 595 667 1.4E-21 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Gene3D G3DSA:2.30.38.10 373 454 2.4E-18 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1296 1307 - T 23-04-2016 IPR020845 AMP-binding, conserved site NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Gene3D G3DSA:3.30.300.30 455 563 2.6E-18 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 SMART SM00823 Phosphopantetheine attachment site 600 669 3.4E-4 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Pfam PF13745 HxxPF-repeated domain 1009 1100 7.2E-28 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Pfam PF00501 AMP-binding enzyme 1155 1561 1.7E-88 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Pfam PF00501 AMP-binding enzyme 19 464 1.1E-82 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 SUPERFAMILY SSF52777 879 1122 2.78E-62 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Gene3D G3DSA:3.40.50.150 1704 1905 4.8E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Gene3D G3DSA:3.30.300.30 1555 1616 4.7E-10 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 SUPERFAMILY SSF53335 1716 1874 2.39E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 PANTHER PTHR24095 10 350 0.0 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 PANTHER PTHR24095 374 1594 0.0 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Pfam PF00550 Phosphopantetheine attachment site 601 665 5.1E-13 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 SUPERFAMILY SSF52777 691 868 6.89E-48 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Gene3D G3DSA:3.40.50.980 1305 1471 1.6E-36 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 Gene3D G3DSA:3.40.50.980 179 338 6.6E-37 T 23-04-2016 NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 SUPERFAMILY SSF47336 599 701 1.83E-18 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1175 1585 1.6E-133 T 23-04-2016 IPR010071 Amino acid adenylation domain NIDE_RS09835 64ea0806b94a4e9b37ca0381a491c768 1907 SUPERFAMILY SSF56801 1111 1592 4.58E-130 T 23-04-2016 NIDE_RS10675 8db8881c0469d3379b92b0b04525ca30 502 SMART SM00729 215 428 5.0E-26 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS10675 8db8881c0469d3379b92b0b04525ca30 502 PANTHER PTHR11918:SF64 31 412 3.6E-53 T 23-04-2016 NIDE_RS10675 8db8881c0469d3379b92b0b04525ca30 502 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 219 239 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 NIDE_RS10675 8db8881c0469d3379b92b0b04525ca30 502 Pfam PF02310 B12 binding domain 22 143 1.6E-10 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS10675 8db8881c0469d3379b92b0b04525ca30 502 Pfam PF04055 Radical SAM superfamily 221 383 8.1E-13 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS10675 8db8881c0469d3379b92b0b04525ca30 502 PANTHER PTHR11918 31 412 3.6E-53 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS10675 8db8881c0469d3379b92b0b04525ca30 502 Gene3D G3DSA:3.80.30.20 215 411 6.4E-38 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS10675 8db8881c0469d3379b92b0b04525ca30 502 SUPERFAMILY SSF102114 201 469 1.57E-44 T 23-04-2016 NIDE_RS13030 f1eef6e469803c16bd83e3b9255c5673 127 Pfam PF13276 HTH-like domain 37 90 1.2E-11 T 23-04-2016 IPR025948 HTH-like domain NIDE_RS15050 ced3e2ae4192a88fc5e529e5c4abf10d 345 SUPERFAMILY SSF46626 242 338 5.35E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15050 ced3e2ae4192a88fc5e529e5c4abf10d 345 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 243 332 1.6E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15050 ced3e2ae4192a88fc5e529e5c4abf10d 345 Gene3D G3DSA:1.10.760.10 231 332 1.9E-11 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS12825 da49dda7c33c20cc048770818b31febc 273 Pfam PF13649 Methyltransferase domain 53 144 1.3E-22 T 23-04-2016 NIDE_RS12825 da49dda7c33c20cc048770818b31febc 273 PANTHER PTHR10108:SF889 210 227 3.1E-35 T 23-04-2016 NIDE_RS12825 da49dda7c33c20cc048770818b31febc 273 PANTHER PTHR10108:SF889 46 158 3.1E-35 T 23-04-2016 NIDE_RS12825 da49dda7c33c20cc048770818b31febc 273 PANTHER PTHR10108 210 227 3.1E-35 T 23-04-2016 NIDE_RS12825 da49dda7c33c20cc048770818b31febc 273 PANTHER PTHR10108 46 158 3.1E-35 T 23-04-2016 NIDE_RS12825 da49dda7c33c20cc048770818b31febc 273 Gene3D G3DSA:3.40.50.150 23 180 4.7E-38 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12825 da49dda7c33c20cc048770818b31febc 273 SUPERFAMILY SSF53335 24 223 6.91E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS06010 d631ed2238a8a6942fd895ebb56653ef 64 PANTHER PTHR33910 6 61 1.3E-14 T 23-04-2016 NIDE_RS06010 d631ed2238a8a6942fd895ebb56653ef 64 PANTHER PTHR33910:SF1 6 61 1.3E-14 T 23-04-2016 NIDE_RS06010 d631ed2238a8a6942fd895ebb56653ef 64 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 9 63 1.3E-17 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 NIDE_RS06010 d631ed2238a8a6942fd895ebb56653ef 64 Hamap MF_00422 Protein translocase subunit SecE [secE]. 7 62 11.603 T 23-04-2016 IPR022943 Preprotein translocase subunit SecE NIDE_RS06010 d631ed2238a8a6942fd895ebb56653ef 64 Gene3D G3DSA:1.20.5.1030 8 64 1.2E-19 T 23-04-2016 NIDE_RS06010 d631ed2238a8a6942fd895ebb56653ef 64 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 11 61 5.4E-18 T 23-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 NIDE_RS13310 83dabe3150a7162f0992db1131163d9a 267 PANTHER PTHR33991 18 261 1.3E-48 T 23-04-2016 NIDE_RS13310 83dabe3150a7162f0992db1131163d9a 267 TIGRFAM TIGR00613 reco: DNA repair protein RecO 20 228 1.8E-40 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 NIDE_RS13310 83dabe3150a7162f0992db1131163d9a 267 Pfam PF02565 Recombination protein O C terminal 100 255 1.1E-21 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 NIDE_RS13310 83dabe3150a7162f0992db1131163d9a 267 SUPERFAMILY SSF50249 16 96 2.06E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS13310 83dabe3150a7162f0992db1131163d9a 267 Hamap MF_00201 DNA repair protein RecO [recO]. 17 264 25.134 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 NIDE_RS13310 83dabe3150a7162f0992db1131163d9a 267 Gene3D G3DSA:2.40.50.140 16 98 1.1E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS13310 83dabe3150a7162f0992db1131163d9a 267 Pfam PF11967 Recombination protein O N terminal 16 92 1.4E-23 T 23-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal NIDE_RS13310 83dabe3150a7162f0992db1131163d9a 267 SUPERFAMILY SSF57863 99 253 2.54E-31 T 23-04-2016 NIDE_RS11940 bccc1c975512ee9a6ae7c34b4e93e671 251 Pfam PF11769 Protein of unknown function (DUF3313) 28 231 2.1E-51 T 23-04-2016 IPR021747 Protein of unknown function DUF3313 NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 PANTHER PTHR32060 43 349 2.5E-128 T 23-04-2016 NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 Gene3D G3DSA:2.30.42.10 94 170 2.6E-28 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 80 156 8.0E-14 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 SMART SM00245 161 350 4.3E-72 T 23-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 SUPERFAMILY SSF50156 76 170 7.23E-21 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 47 363 4.1E-112 T 23-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 Pfam PF03572 Peptidase family S41 187 349 7.8E-61 T 23-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 Gene3D G3DSA:3.90.226.10 404 424 2.2E-73 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 Gene3D G3DSA:3.90.226.10 171 352 2.2E-73 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 Gene3D G3DSA:3.30.750.44 51 93 5.3E-11 T 23-04-2016 NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 SMART SM00228 88 159 5.1E-17 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 SUPERFAMILY SSF52096 180 354 1.51E-85 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS14040 7b8be9a69325af427ed6f6908ff687e4 435 SUPERFAMILY SSF52096 25 106 1.51E-85 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS00135 167485dd82c0f75fd858739f296e2193 161 Gene3D G3DSA:3.30.460.10 4 102 3.5E-23 T 23-04-2016 NIDE_RS00135 167485dd82c0f75fd858739f296e2193 161 SUPERFAMILY SSF81301 4 90 1.04E-16 T 23-04-2016 NIDE_RS00135 167485dd82c0f75fd858739f296e2193 161 Pfam PF01909 Nucleotidyltransferase domain 5 70 2.1E-8 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 NIDE_RS14215 ec80f8e224784b757ad20d20cbf94bfe 406 PANTHER PTHR14226 135 220 2.8E-17 T 23-04-2016 NIDE_RS14215 ec80f8e224784b757ad20d20cbf94bfe 406 PANTHER PTHR14226 4 97 2.8E-17 T 23-04-2016 NIDE_RS14215 ec80f8e224784b757ad20d20cbf94bfe 406 Gene3D G3DSA:3.40.1090.10 121 222 3.9E-13 T 23-04-2016 NIDE_RS14215 ec80f8e224784b757ad20d20cbf94bfe 406 Gene3D G3DSA:3.40.1090.10 8 84 3.9E-13 T 23-04-2016 NIDE_RS14215 ec80f8e224784b757ad20d20cbf94bfe 406 Pfam PF01734 Patatin-like phospholipase 10 228 2.0E-19 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 NIDE_RS14215 ec80f8e224784b757ad20d20cbf94bfe 406 SUPERFAMILY SSF52151 6 84 1.26E-35 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS14215 ec80f8e224784b757ad20d20cbf94bfe 406 SUPERFAMILY SSF52151 130 336 1.26E-35 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS14060 8f8f287ff33125c3ec32ed748be965f5 101 Hamap MF_00048 UPF0102 protein YraN [yraN]. 5 101 18.845 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 NIDE_RS14060 8f8f287ff33125c3ec32ed748be965f5 101 Pfam PF02021 Uncharacterised protein family UPF0102 12 100 3.9E-26 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 NIDE_RS14060 8f8f287ff33125c3ec32ed748be965f5 101 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 6 100 2.9E-30 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 NIDE_RS14060 8f8f287ff33125c3ec32ed748be965f5 101 PANTHER PTHR34039 1 101 3.7E-35 T 23-04-2016 NIDE_RS14060 8f8f287ff33125c3ec32ed748be965f5 101 Gene3D G3DSA:3.40.1350.10 12 101 4.8E-32 T 23-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 NIDE_RS14060 8f8f287ff33125c3ec32ed748be965f5 101 SUPERFAMILY SSF52980 7 101 9.52E-20 T 23-04-2016 IPR011335 Restriction endonuclease type II-like NIDE_RS14060 8f8f287ff33125c3ec32ed748be965f5 101 PANTHER PTHR34039:SF1 1 101 3.7E-35 T 23-04-2016 NIDE_RS01410 132402784b542426b6beeeb3a21e89a7 380 Gene3D G3DSA:3.30.2010.10 159 242 4.1E-18 T 23-04-2016 NIDE_RS01410 132402784b542426b6beeeb3a21e89a7 380 PANTHER PTHR22726 64 337 3.4E-44 T 23-04-2016 NIDE_RS01410 132402784b542426b6beeeb3a21e89a7 380 Pfam PF01435 Peptidase family M48 165 337 4.3E-31 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 NIDE_RS20900 44bddb12a5fa4d33cf835d3b532e006d 259 PANTHER PTHR26312 149 259 6.9E-14 T 23-04-2016 NIDE_RS20900 44bddb12a5fa4d33cf835d3b532e006d 259 Pfam PF13525 Outer membrane lipoprotein 136 244 3.5E-8 T 23-04-2016 NIDE_RS20900 44bddb12a5fa4d33cf835d3b532e006d 259 PANTHER PTHR26312:SF74 149 259 6.9E-14 T 23-04-2016 NIDE_RS20900 44bddb12a5fa4d33cf835d3b532e006d 259 SUPERFAMILY SSF48452 138 255 7.59E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20900 44bddb12a5fa4d33cf835d3b532e006d 259 Gene3D G3DSA:1.25.40.10 141 254 2.8E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20900 44bddb12a5fa4d33cf835d3b532e006d 259 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 139 255 8.2E-35 T 23-04-2016 IPR014162 Tol-Pal system, YbgF NIDE_RS20900 44bddb12a5fa4d33cf835d3b532e006d 259 SMART SM00028 175 208 24.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20900 44bddb12a5fa4d33cf835d3b532e006d 259 SMART SM00028 212 245 14.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS01015 533b53ef8158d584dc3280079438f0fc 153 SUPERFAMILY SSF52172 6 132 4.41E-29 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS01015 533b53ef8158d584dc3280079438f0fc 153 Pfam PF00072 Response regulator receiver domain 7 129 1.8E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS01015 533b53ef8158d584dc3280079438f0fc 153 Gene3D G3DSA:3.40.50.2300 6 132 6.7E-33 T 23-04-2016 NIDE_RS01015 533b53ef8158d584dc3280079438f0fc 153 SMART SM00448 5 129 8.4E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS01015 533b53ef8158d584dc3280079438f0fc 153 PANTHER PTHR26402 5 132 1.4E-30 T 23-04-2016 NIDE_RS05890 830b11bc957c3f880418cde790eba3ee 356 Pfam PF00589 Phage integrase family 163 321 3.1E-36 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS05890 830b11bc957c3f880418cde790eba3ee 356 Gene3D G3DSA:1.10.443.10 162 327 6.1E-43 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS05890 830b11bc957c3f880418cde790eba3ee 356 Gene3D G3DSA:1.10.150.130 59 152 1.5E-10 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal NIDE_RS05890 830b11bc957c3f880418cde790eba3ee 356 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 76 139 9.3E-6 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 NIDE_RS05890 830b11bc957c3f880418cde790eba3ee 356 PANTHER PTHR30349:SF20 59 333 1.9E-53 T 23-04-2016 NIDE_RS05890 830b11bc957c3f880418cde790eba3ee 356 PANTHER PTHR30349 59 333 1.9E-53 T 23-04-2016 NIDE_RS05890 830b11bc957c3f880418cde790eba3ee 356 SUPERFAMILY SSF56349 59 327 5.59E-66 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PANTHER PTHR10724 14 523 2.7E-232 T 23-04-2016 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SUPERFAMILY SSF50249 263 379 1.72E-29 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SUPERFAMILY SSF50249 437 540 3.86E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SUPERFAMILY SSF50249 197 285 1.72E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SUPERFAMILY SSF50249 23 121 1.58E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 24 529 1.6E-198 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Gene3D G3DSA:2.40.50.140 286 370 1.9E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PRINTS PR00681 Ribosomal protein S1 signature 31 49 3.7E-75 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PRINTS PR00681 Ribosomal protein S1 signature 220 241 3.7E-75 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PRINTS PR00681 Ribosomal protein S1 signature 163 183 3.7E-75 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PRINTS PR00681 Ribosomal protein S1 signature 338 356 3.7E-75 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PRINTS PR00681 Ribosomal protein S1 signature 298 317 3.7E-75 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PRINTS PR00681 Ribosomal protein S1 signature 117 133 3.7E-75 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PRINTS PR00681 Ribosomal protein S1 signature 134 151 3.7E-75 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PRINTS PR00681 Ribosomal protein S1 signature 49 63 3.7E-75 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PRINTS PR00681 Ribosomal protein S1 signature 93 112 3.7E-75 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Gene3D G3DSA:2.40.50.140 452 532 5.6E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Gene3D G3DSA:2.40.50.140 183 270 4.3E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SUPERFAMILY SSF50249 97 182 1.57E-12 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SMART SM00316 458 529 4.6E-23 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SMART SM00316 283 355 1.5E-26 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SMART SM00316 198 268 1.0E-27 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SMART SM00316 370 442 1.3E-26 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SMART SM00316 29 96 3.0E-11 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SMART SM00316 112 179 0.0011 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 SUPERFAMILY SSF50249 355 446 2.39E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 PANTHER PTHR10724:SF6 14 523 2.7E-232 T 23-04-2016 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Gene3D G3DSA:2.40.50.140 105 179 8.8E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Gene3D G3DSA:2.40.50.140 22 104 4.1E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Gene3D G3DSA:2.40.50.140 371 451 1.4E-29 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Pfam PF00575 S1 RNA binding domain 28 95 4.5E-10 T 23-04-2016 IPR003029 S1 domain GO:0003676 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Pfam PF00575 S1 RNA binding domain 369 442 1.2E-20 T 23-04-2016 IPR003029 S1 domain GO:0003676 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Pfam PF00575 S1 RNA binding domain 111 179 4.2E-8 T 23-04-2016 IPR003029 S1 domain GO:0003676 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Pfam PF00575 S1 RNA binding domain 282 355 5.0E-20 T 23-04-2016 IPR003029 S1 domain GO:0003676 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Pfam PF00575 S1 RNA binding domain 457 529 6.3E-18 T 23-04-2016 IPR003029 S1 domain GO:0003676 NIDE_RS01970 dbe5fa7c16a7ad5b239689d30b7f5e1e 571 Pfam PF00575 S1 RNA binding domain 197 268 7.2E-18 T 23-04-2016 IPR003029 S1 domain GO:0003676 NIDE_RS05200 d31fddd3833b8e9699735102d79b653a 392 Gene3D G3DSA:3.40.50.620 174 333 3.2E-49 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS05200 d31fddd3833b8e9699735102d79b653a 392 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 176 369 4.6E-69 T 23-04-2016 IPR020536 Thil, AANH domain GO:0004810 UniPathway: UPA00060 NIDE_RS05200 d31fddd3833b8e9699735102d79b653a 392 PANTHER PTHR14911:SF16 5 384 5.2E-117 T 23-04-2016 NIDE_RS05200 d31fddd3833b8e9699735102d79b653a 392 SUPERFAMILY SSF143437 1 174 6.28E-40 T 23-04-2016 NIDE_RS05200 d31fddd3833b8e9699735102d79b653a 392 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 392 120.07 T 23-04-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 UniPathway: UPA00060 NIDE_RS05200 d31fddd3833b8e9699735102d79b653a 392 SMART SM00981 78 166 7.6E-13 T 23-04-2016 IPR004114 THUMP domain GO:0003723 NIDE_RS05200 d31fddd3833b8e9699735102d79b653a 392 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 5 372 1.4E-110 T 23-04-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 UniPathway: UPA00060 NIDE_RS05200 d31fddd3833b8e9699735102d79b653a 392 Pfam PF02926 THUMP domain 31 162 2.1E-16 T 23-04-2016 IPR004114 THUMP domain GO:0003723 NIDE_RS05200 d31fddd3833b8e9699735102d79b653a 392 SUPERFAMILY SSF52402 175 376 2.16E-45 T 23-04-2016 NIDE_RS05200 d31fddd3833b8e9699735102d79b653a 392 PANTHER PTHR14911 5 384 5.2E-117 T 23-04-2016 NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Gene3D G3DSA:4.10.860.10 621 657 2.4E-12 T 23-04-2016 IPR001943 UVR domain GO:0005515 NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Pfam PF02151 UvrB/uvrC motif 624 657 1.0E-7 T 23-04-2016 IPR001943 UVR domain GO:0005515 NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 659 42.941 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 SUPERFAMILY SSF52540 2 414 4.55E-136 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Pfam PF00271 Helicase conserved C-terminal domain 434 544 1.5E-18 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 SMART SM00487 8 425 6.0E-23 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 SUPERFAMILY SSF52540 34 81 7.22E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 SUPERFAMILY SSF52540 458 570 7.22E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 PANTHER PTHR24029 1 663 0.0 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 SMART SM00490 459 545 7.9E-19 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 SUPERFAMILY SSF46600 620 658 5.62E-10 T 23-04-2016 IPR001943 UVR domain GO:0005515 NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 4 657 0.0 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Gene3D G3DSA:3.40.50.300 387 406 5.4E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Gene3D G3DSA:3.40.50.300 5 88 5.4E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Gene3D G3DSA:3.40.50.300 277 337 5.4E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Gene3D G3DSA:3.30.2060.10 159 237 2.3E-10 T 23-04-2016 NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Gene3D G3DSA:3.40.50.300 421 579 1.0E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Pfam PF04851 Type III restriction enzyme, res subunit 15 138 2.0E-11 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 NIDE_RS14100 7d73f899cdd3e4293d2af42061ad0e76 665 Pfam PF12344 Ultra-violet resistance protein B 551 592 2.1E-22 T 23-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 Pfam PF13692 Glycosyl transferases group 1 863 999 7.4E-22 T 23-04-2016 NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 SUPERFAMILY SSF53448 404 648 2.25E-55 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 SUPERFAMILY SSF53756 689 1032 4.27E-27 T 23-04-2016 NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 SUPERFAMILY SSF53335 30 175 1.96E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 Gene3D G3DSA:3.40.50.150 18 175 3.8E-35 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 Pfam PF00535 Glycosyl transferase family 2 411 538 7.4E-27 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 SUPERFAMILY SSF53335 1152 1265 3.08E-15 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 PANTHER PTHR22916:SF26 356 671 7.0E-55 T 23-04-2016 NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 PANTHER PTHR22916 356 671 7.0E-55 T 23-04-2016 NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 Pfam PF08241 Methyltransferase domain 1151 1201 1.6E-8 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 Pfam PF08241 Methyltransferase domain 40 134 6.1E-21 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 Gene3D G3DSA:3.90.550.10 408 652 5.5E-57 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20945 808ae31739ccb8be37829b2f943af5b3 1285 Gene3D G3DSA:3.40.50.150 1151 1272 4.9E-15 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS15395 f55a6ca674897faa1b0a08e948ae29b9 316 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 22 105 1.5E-22 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 NIDE_RS15395 f55a6ca674897faa1b0a08e948ae29b9 316 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 18 312 30.55 T 23-04-2016 IPR023009 Tyrosine recombinase XerC/XerD NIDE_RS15395 f55a6ca674897faa1b0a08e948ae29b9 316 PANTHER PTHR30349 18 316 9.2E-100 T 23-04-2016 NIDE_RS15395 f55a6ca674897faa1b0a08e948ae29b9 316 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 23 312 9.0E-104 T 23-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 NIDE_RS15395 f55a6ca674897faa1b0a08e948ae29b9 316 Gene3D G3DSA:1.10.443.10 127 304 4.8E-58 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS15395 f55a6ca674897faa1b0a08e948ae29b9 316 Gene3D G3DSA:1.10.150.130 18 113 5.1E-26 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal NIDE_RS15395 f55a6ca674897faa1b0a08e948ae29b9 316 PANTHER PTHR30349:SF5 18 316 9.2E-100 T 23-04-2016 NIDE_RS15395 f55a6ca674897faa1b0a08e948ae29b9 316 Pfam PF00589 Phage integrase family 127 297 5.5E-49 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS15395 f55a6ca674897faa1b0a08e948ae29b9 316 SUPERFAMILY SSF56349 18 304 2.8E-58 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS12220 6b15bb933231f3d92b0fa8bda6f6bb90 350 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 12 348 37.546 T 23-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 NIDE_RS12220 6b15bb933231f3d92b0fa8bda6f6bb90 350 Gene3D G3DSA:3.40.50.10210 74 329 3.2E-114 T 23-04-2016 NIDE_RS12220 6b15bb933231f3d92b0fa8bda6f6bb90 350 SUPERFAMILY SSF52733 4 347 6.8E-121 T 23-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 NIDE_RS12220 6b15bb933231f3d92b0fa8bda6f6bb90 350 Gene3D G3DSA:1.10.1610.10 2 73 1.8E-31 T 23-04-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 NIDE_RS12220 6b15bb933231f3d92b0fa8bda6f6bb90 350 Pfam PF02277 Phosphoribosyltransferase 10 346 1.9E-139 T 23-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 NIDE_RS12220 6b15bb933231f3d92b0fa8bda6f6bb90 350 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 15 346 9.8E-139 T 23-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 NIDE_RS12220 6b15bb933231f3d92b0fa8bda6f6bb90 350 PANTHER PTHR21712:SF4 1 350 2.3E-127 T 23-04-2016 NIDE_RS12220 6b15bb933231f3d92b0fa8bda6f6bb90 350 PANTHER PTHR21712 1 350 2.3E-127 T 23-04-2016 NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 TIGRFAM TIGR01052 top6b: DNA topoisomerase VI, B subunit 10 517 6.9E-156 T 23-04-2016 IPR005734 DNA topoisomerase VI, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 PANTHER PTHR10871:SF4 1 601 4.4E-89 T 23-04-2016 IPR005734 DNA topoisomerase VI, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 SUPERFAMILY SSF46946 241 314 4.94E-8 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 SUPERFAMILY SSF54211 316 502 3.87E-48 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 PIRSF PIRSF006553 1 608 9.0E-194 T 23-04-2016 IPR005734 DNA topoisomerase VI, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 SUPERFAMILY SSF55874 17 237 1.31E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 PANTHER PTHR10871 1 601 4.4E-89 T 23-04-2016 NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 Pfam PF09239 Topoisomerase VI B subunit, transducer 318 499 5.0E-59 T 23-04-2016 IPR015320 DNA topoisomerase VI, subunit B, transducer GO:0003677|GO:0003918|GO:0006265 NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 Hamap MF_00322 Type 2 DNA topoisomerase 6 subunit B [top6B]. 7 540 30.725 T 23-04-2016 IPR005734 DNA topoisomerase VI, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 ProDom PD013790 TOPOISOMERASE ISOMERASE SUBUNIT DNA B VI TYPE II NUCLEOTIDE-BINDING ATP-BINDING 317 481 3.0E-36 T 23-04-2016 IPR015320 DNA topoisomerase VI, subunit B, transducer GO:0003677|GO:0003918|GO:0006265 NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 Gene3D G3DSA:3.30.230.10 317 543 2.8E-74 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 33 144 2.9E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 SMART SM00387 30 162 7.1E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 Gene3D G3DSA:3.30.565.10 12 217 3.6E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09460 9b1a518b4fc37c26ccf92d5536d0c091 662 Gene3D G3DSA:1.10.8.50 241 316 3.4E-17 T 23-04-2016 NIDE_RS01980 771b3572da81c8feb07c8aa6461b4790 92 SMART SM00411 1 91 3.2E-36 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS01980 771b3572da81c8feb07c8aa6461b4790 92 SUPERFAMILY SSF47729 1 91 1.15E-29 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 NIDE_RS01980 771b3572da81c8feb07c8aa6461b4790 92 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 8.7E-16 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS01980 771b3572da81c8feb07c8aa6461b4790 92 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 8.7E-16 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS01980 771b3572da81c8feb07c8aa6461b4790 92 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 8.7E-16 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS01980 771b3572da81c8feb07c8aa6461b4790 92 Gene3D G3DSA:4.10.520.10 1 92 4.7E-32 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 NIDE_RS01980 771b3572da81c8feb07c8aa6461b4790 92 Pfam PF00216 Bacterial DNA-binding protein 1 91 2.6E-29 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS01980 771b3572da81c8feb07c8aa6461b4790 92 PANTHER PTHR33175 1 91 5.3E-36 T 23-04-2016 NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 16 743 5.0E-294 T 23-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 Pfam PF00586 AIR synthase related protein, N-terminal domain 85 187 1.7E-24 T 23-04-2016 IPR016188 PurM-like, N-terminal domain NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 Pfam PF00586 AIR synthase related protein, N-terminal domain 439 556 1.2E-24 T 23-04-2016 IPR016188 PurM-like, N-terminal domain NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 PANTHER PTHR10099:SF2 16 745 0.0 T 23-04-2016 NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 PANTHER PTHR10099 16 745 0.0 T 23-04-2016 NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 Pfam PF02769 AIR synthase related protein, C-terminal domain 201 351 2.8E-32 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 Pfam PF02769 AIR synthase related protein, C-terminal domain 570 714 1.3E-17 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 SUPERFAMILY SSF55326 12 194 1.23E-50 T 23-04-2016 NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 SUPERFAMILY SSF56042 197 424 2.24E-55 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 SUPERFAMILY SSF56042 567 744 3.14E-38 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 748 324.546 T 23-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 PIRSF PIRSF001587 2 748 0.0 T 23-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 Gene3D G3DSA:3.30.1330.10 48 192 1.9E-45 T 23-04-2016 IPR016188 PurM-like, N-terminal domain NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 Gene3D G3DSA:3.30.1330.10 412 559 4.9E-63 T 23-04-2016 IPR016188 PurM-like, N-terminal domain NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 SUPERFAMILY SSF55326 396 564 4.45E-60 T 23-04-2016 NIDE_RS06455 1f2572edfdc86830337617540b74a3db 748 Gene3D G3DSA:3.90.650.10 211 354 1.2E-4 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 Gene3D G3DSA:3.40.50.720 2 251 8.9E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 SUPERFAMILY SSF51735 4 252 4.26E-71 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 3.9E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 3.9E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 3.9E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.9E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.9E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 PIRSF PIRSF000094 1 257 4.9E-106 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 PANTHER PTHR24322:SF317 157 189 2.6E-60 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 PANTHER PTHR24322:SF317 10 141 2.6E-60 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 250 4.2E-88 T 23-04-2016 NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 PANTHER PTHR24322 157 189 2.6E-60 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS07375 704bdebdc04beec21789666099cca4dd 259 PANTHER PTHR24322 10 141 2.6E-60 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09185 b674ea117aeb771d48d9a4de18b25ba1 668 Pfam PF00656 Caspase domain 423 645 2.9E-23 T 23-04-2016 NIDE_RS09185 b674ea117aeb771d48d9a4de18b25ba1 668 Gene3D G3DSA:3.40.50.1460 420 562 2.5E-12 T 23-04-2016 IPR029030 Caspase-like domain NIDE_RS09185 b674ea117aeb771d48d9a4de18b25ba1 668 PANTHER PTHR11102 96 180 7.0E-21 T 23-04-2016 NIDE_RS09185 b674ea117aeb771d48d9a4de18b25ba1 668 SUPERFAMILY SSF52129 417 645 6.67E-23 T 23-04-2016 IPR029030 Caspase-like domain NIDE_RS09185 b674ea117aeb771d48d9a4de18b25ba1 668 SUPERFAMILY SSF81901 93 182 1.03E-21 T 23-04-2016 NIDE_RS09185 b674ea117aeb771d48d9a4de18b25ba1 668 Pfam PF08238 Sel1 repeat 149 180 0.0012 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS09185 b674ea117aeb771d48d9a4de18b25ba1 668 Pfam PF08238 Sel1 repeat 113 147 3.9E-6 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS09185 b674ea117aeb771d48d9a4de18b25ba1 668 Gene3D G3DSA:1.25.40.10 89 180 1.2E-23 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS09185 b674ea117aeb771d48d9a4de18b25ba1 668 SMART SM00671 149 184 7.1E-5 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS09185 b674ea117aeb771d48d9a4de18b25ba1 668 SMART SM00671 113 148 5.7E-7 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS03055 3b82c1b73ff34400305309b118c24761 411 PANTHER PTHR34219 26 405 2.1E-54 T 23-04-2016 NIDE_RS03055 3b82c1b73ff34400305309b118c24761 411 Pfam PF03929 PepSY-associated TM region 37 398 3.9E-54 T 23-04-2016 IPR005625 PepSY-associated TM protein NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 SMART SM00482 635 841 2.5E-97 T 23-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Gene3D G3DSA:3.30.420.10 303 492 2.9E-38 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Pfam PF00476 DNA polymerase family A 502 877 6.4E-145 T 23-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Pfam PF01612 3'-5' exonuclease 332 423 1.1E-4 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Gene3D G3DSA:1.10.150.20 178 239 3.9E-29 T 23-04-2016 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Gene3D G3DSA:1.10.150.20 661 766 6.6E-29 T 23-04-2016 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 SMART SM00475 1 257 5.4E-127 T 23-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Gene3D G3DSA:3.40.50.1010 3 177 2.3E-67 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 164 1.0E-54 T 23-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PRINTS PR00868 DNA-polymerase family A (pol I) signature 649 672 2.0E-68 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PRINTS PR00868 DNA-polymerase family A (pol I) signature 740 751 2.0E-68 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PRINTS PR00868 DNA-polymerase family A (pol I) signature 703 728 2.0E-68 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PRINTS PR00868 DNA-polymerase family A (pol I) signature 762 773 2.0E-68 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PRINTS PR00868 DNA-polymerase family A (pol I) signature 794 810 2.0E-68 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PRINTS PR00868 DNA-polymerase family A (pol I) signature 627 642 2.0E-68 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PRINTS PR00868 DNA-polymerase family A (pol I) signature 824 837 2.0E-68 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PRINTS PR00868 DNA-polymerase family A (pol I) signature 679 692 2.0E-68 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PRINTS PR00868 DNA-polymerase family A (pol I) signature 604 626 2.0E-68 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 SUPERFAMILY SSF56672 473 880 3.67E-146 T 23-04-2016 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 TIGRFAM TIGR00593 pola: DNA polymerase I 4 879 7.3E-289 T 23-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Gene3D G3DSA:3.30.70.370 767 880 4.5E-65 T 23-04-2016 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Gene3D G3DSA:3.30.70.370 613 660 4.5E-65 T 23-04-2016 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 SUPERFAMILY SSF53098 302 469 1.18E-25 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 SMART SM00279 168 203 2.4E-13 T 23-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 166 261 1.2E-30 T 23-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 Gene3D G3DSA:1.20.1060.10 493 612 7.1E-37 T 23-04-2016 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PANTHER PTHR10133:SF27 2 881 0.0 T 23-04-2016 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 ProSitePatterns PS00447 DNA polymerase family A signature. 703 722 - T 23-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 SMART SM00474 294 468 3.3E-7 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 SUPERFAMILY SSF88723 1 156 6.13E-55 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 SUPERFAMILY SSF47807 166 280 1.79E-29 T 23-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 NIDE_RS18970 7f63bea09a5665033cdb06b928a9335e 881 PANTHER PTHR10133 2 881 0.0 T 23-04-2016 NIDE_RS16940 26b0c60939c51ed548993d08530a5f9a 138 PANTHER PTHR11717 2 137 3.3E-47 T 23-04-2016 NIDE_RS16940 26b0c60939c51ed548993d08530a5f9a 138 SMART SM00226 3 135 1.1E-44 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily NIDE_RS16940 26b0c60939c51ed548993d08530a5f9a 138 Gene3D G3DSA:3.40.50.270 2 133 6.5E-49 T 23-04-2016 NIDE_RS16940 26b0c60939c51ed548993d08530a5f9a 138 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 133 1.8E-22 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily NIDE_RS16940 26b0c60939c51ed548993d08530a5f9a 138 PANTHER PTHR11717:SF18 2 137 3.3E-47 T 23-04-2016 NIDE_RS16940 26b0c60939c51ed548993d08530a5f9a 138 SUPERFAMILY SSF52788 1 133 5.49E-46 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily NIDE_RS10530 da40516698c45d74356c95166ff19675 240 Pfam PF00813 FliP family 43 234 3.7E-81 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 168 183 - T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PANTHER PTHR30587:SF0 30 240 1.5E-111 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 43 239 7.3E-89 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 111 125 1.4E-24 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 39 48 1.4E-24 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 99 111 1.4E-24 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 229 239 1.4E-24 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 161 173 1.4E-24 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 139 151 1.4E-24 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 168 188 7.0E-66 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 80 99 7.0E-66 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 189 210 7.0E-66 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 60 80 7.0E-66 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 41 60 7.0E-66 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 213 238 7.0E-66 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 PANTHER PTHR30587 30 240 1.5E-111 T 23-04-2016 NIDE_RS10530 da40516698c45d74356c95166ff19675 240 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 216 228 - T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 NIDE_RS10315 6c14fc6c8c57701de81bb468190b6867 131 Pfam PF04241 Protein of unknown function (DUF423) 24 110 4.4E-30 T 23-04-2016 IPR006696 Protein of unknown function DUF423 NIDE_RS10315 6c14fc6c8c57701de81bb468190b6867 131 PANTHER PTHR10584 10 71 3.1E-18 T 23-04-2016 NIDE_RS10315 6c14fc6c8c57701de81bb468190b6867 131 PANTHER PTHR10584:SF191 10 71 3.1E-18 T 23-04-2016 NIDE_RS14025 c1106ee9956a780aa602b67005981873 259 SUPERFAMILY SSF110399 6 246 3.14E-86 T 23-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 NIDE_RS14025 c1106ee9956a780aa602b67005981873 259 PANTHER PTHR34266 2 259 1.8E-158 T 23-04-2016 NIDE_RS14025 c1106ee9956a780aa602b67005981873 259 Hamap MF_00443 Thiazole synthase [thiG]. 7 259 42.577 T 23-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 NIDE_RS14025 c1106ee9956a780aa602b67005981873 259 Gene3D G3DSA:3.20.20.70 9 256 1.5E-54 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS14025 c1106ee9956a780aa602b67005981873 259 Pfam PF05690 Thiazole biosynthesis protein ThiG 10 254 6.1E-112 T 23-04-2016 NIDE_RS14025 c1106ee9956a780aa602b67005981873 259 PANTHER PTHR34266:SF2 2 259 1.8E-158 T 23-04-2016 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 467 60.088 T 23-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PANTHER PTHR11670:SF38 328 464 2.8E-291 T 23-04-2016 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PANTHER PTHR11670:SF38 4 308 2.8E-291 T 23-04-2016 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 Gene3D G3DSA:3.40.1060.10 167 281 7.7E-39 T 23-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PRINTS PR00415 Aconitase family signature 344 355 7.1E-49 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PRINTS PR00415 Aconitase family signature 210 223 7.1E-49 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PRINTS PR00415 Aconitase family signature 400 413 7.1E-49 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PRINTS PR00415 Aconitase family signature 134 149 7.1E-49 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PRINTS PR00415 Aconitase family signature 109 117 7.1E-49 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PRINTS PR00415 Aconitase family signature 120 133 7.1E-49 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PRINTS PR00415 Aconitase family signature 83 96 7.1E-49 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PRINTS PR00415 Aconitase family signature 196 209 7.1E-49 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PRINTS PR00415 Aconitase family signature 287 301 7.1E-49 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PANTHER PTHR11670 328 464 2.8E-291 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 PANTHER PTHR11670 4 308 2.8E-291 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 465 2.4E-238 T 23-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 Pfam PF00330 Aconitase family (aconitate hydratase) 8 458 4.1E-157 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 Gene3D G3DSA:3.30.499.10 336 465 5.7E-61 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 ProSitePatterns PS00450 Aconitase family signature 1. 340 356 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 ProSitePatterns PS01244 Aconitase family signature 2. 400 413 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 Gene3D G3DSA:3.30.499.10 3 165 9.2E-25 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS19825 b13883302460d11a8edfb73d333b6089 467 SUPERFAMILY SSF53732 3 466 1.31E-166 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS10785 980e7cf00184f00ff38ff34b915d23d5 327 PANTHER PTHR22617 1 180 5.4E-46 T 23-04-2016 NIDE_RS10785 980e7cf00184f00ff38ff34b915d23d5 327 Gene3D G3DSA:3.40.50.2300 185 317 8.7E-27 T 23-04-2016 NIDE_RS10785 980e7cf00184f00ff38ff34b915d23d5 327 SMART SM00260 17 163 3.2E-28 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10785 980e7cf00184f00ff38ff34b915d23d5 327 Pfam PF00072 Response regulator receiver domain 189 310 3.3E-15 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10785 980e7cf00184f00ff38ff34b915d23d5 327 SUPERFAMILY SSF52172 183 317 1.85E-24 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10785 980e7cf00184f00ff38ff34b915d23d5 327 SMART SM00448 187 312 1.8E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10785 980e7cf00184f00ff38ff34b915d23d5 327 PIRSF PIRSF002867 1 320 4.8E-97 T 23-04-2016 IPR024181 Chemotaxis response regulator CheV NIDE_RS10785 980e7cf00184f00ff38ff34b915d23d5 327 SUPERFAMILY SSF50341 17 167 3.01E-32 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10785 980e7cf00184f00ff38ff34b915d23d5 327 PANTHER PTHR22617:SF37 1 180 5.4E-46 T 23-04-2016 NIDE_RS10785 980e7cf00184f00ff38ff34b915d23d5 327 Pfam PF01584 CheW-like domain 21 165 1.6E-34 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS15480 e2b6a84666f3b6f037c4fd7120fc2399 334 PANTHER PTHR12001 21 334 9.6E-109 T 23-04-2016 IPR017446 Polyprenyl synthetase-related NIDE_RS15480 e2b6a84666f3b6f037c4fd7120fc2399 334 PANTHER PTHR12001:SF47 21 334 9.6E-109 T 23-04-2016 NIDE_RS15480 e2b6a84666f3b6f037c4fd7120fc2399 334 Gene3D G3DSA:1.10.600.10 12 333 1.3E-100 T 23-04-2016 IPR008949 Isoprenoid synthase domain NIDE_RS15480 e2b6a84666f3b6f037c4fd7120fc2399 334 Pfam PF00348 Polyprenyl synthetase 41 284 1.6E-68 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 NIDE_RS15480 e2b6a84666f3b6f037c4fd7120fc2399 334 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 91 105 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 NIDE_RS15480 e2b6a84666f3b6f037c4fd7120fc2399 334 SUPERFAMILY SSF48576 9 333 4.8E-96 T 23-04-2016 IPR008949 Isoprenoid synthase domain NIDE_RS02755 d584acf05538f52bcc3e3db44b961437 289 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 282 31.841 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02755 d584acf05538f52bcc3e3db44b961437 289 Gene3D G3DSA:3.10.310.10 3 123 2.3E-41 T 23-04-2016 NIDE_RS02755 d584acf05538f52bcc3e3db44b961437 289 SUPERFAMILY SSF54506 144 279 7.26E-37 T 23-04-2016 NIDE_RS02755 d584acf05538f52bcc3e3db44b961437 289 PANTHER PTHR31689 5 286 1.1E-89 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02755 d584acf05538f52bcc3e3db44b961437 289 Gene3D G3DSA:3.10.310.10 124 270 4.6E-40 T 23-04-2016 NIDE_RS02755 d584acf05538f52bcc3e3db44b961437 289 SUPERFAMILY SSF54506 5 134 2.17E-35 T 23-04-2016 NIDE_RS02755 d584acf05538f52bcc3e3db44b961437 289 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 5 280 1.2E-67 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02755 d584acf05538f52bcc3e3db44b961437 289 Pfam PF01678 Diaminopimelate epimerase 5 128 4.9E-29 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02755 d584acf05538f52bcc3e3db44b961437 289 Pfam PF01678 Diaminopimelate epimerase 159 272 4.7E-21 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS03980 57903e1cb91b7193092e1ddfb957f2dd 147 Pfam PF02470 MlaD protein 38 112 3.4E-18 T 23-04-2016 IPR003399 Mce/MlaD NIDE_RS03980 57903e1cb91b7193092e1ddfb957f2dd 147 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 143 4.4E-41 T 23-04-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 NIDE_RS03980 57903e1cb91b7193092e1ddfb957f2dd 147 PANTHER PTHR33371 1 143 1.1E-39 T 23-04-2016 NIDE_RS10860 1dbc681f8b8ab89b5907a7a9357990c9 191 SUPERFAMILY SSF64438 12 163 1.19E-43 T 23-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic NIDE_RS10860 1dbc681f8b8ab89b5907a7a9357990c9 191 PANTHER PTHR35147 2 191 2.6E-65 T 23-04-2016 NIDE_RS10860 1dbc681f8b8ab89b5907a7a9357990c9 191 PANTHER PTHR35147:SF2 2 191 2.6E-65 T 23-04-2016 NIDE_RS10860 1dbc681f8b8ab89b5907a7a9357990c9 191 Pfam PF03975 CheD chemotactic sensory transduction 53 157 5.6E-26 T 23-04-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 NIDE_RS10860 1dbc681f8b8ab89b5907a7a9357990c9 191 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 6 161 26.127 T 23-04-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 NIDE_RS12835 d2492121313616e155247a48e47f7f8a 296 Pfam PF06719 AraC-type transcriptional regulator N-terminus 22 172 1.3E-50 T 23-04-2016 IPR009594 Transcription regulator HTH, AraC, N-terminal NIDE_RS12835 d2492121313616e155247a48e47f7f8a 296 SMART SM00342 202 285 5.2E-24 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NIDE_RS12835 d2492121313616e155247a48e47f7f8a 296 Gene3D G3DSA:1.10.10.60 240 281 5.2E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS12835 d2492121313616e155247a48e47f7f8a 296 SUPERFAMILY SSF46689 185 235 2.49E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS12835 d2492121313616e155247a48e47f7f8a 296 Pfam PF12833 Helix-turn-helix domain 208 281 4.4E-20 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NIDE_RS12835 d2492121313616e155247a48e47f7f8a 296 SUPERFAMILY SSF46689 238 283 8.51E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS12835 d2492121313616e155247a48e47f7f8a 296 Gene3D G3DSA:1.10.10.60 181 239 1.1E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS12835 d2492121313616e155247a48e47f7f8a 296 PANTHER PTHR11019 23 293 4.8E-88 T 23-04-2016 NIDE_RS12835 d2492121313616e155247a48e47f7f8a 296 PANTHER PTHR11019:SF81 23 293 4.8E-88 T 23-04-2016 NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 Gene3D G3DSA:3.90.180.10 88 175 3.6E-19 T 23-04-2016 IPR011032 GroES-like NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 Gene3D G3DSA:3.90.180.10 1 54 3.6E-19 T 23-04-2016 IPR011032 GroES-like NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 SUPERFAMILY SSF51735 148 301 5.21E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 PANTHER PTHR22604 353 711 3.4E-50 T 23-04-2016 NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 SUPERFAMILY SSF55347 549 686 1.64E-13 T 23-04-2016 NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 SUPERFAMILY SSF51735 382 557 5.82E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 Pfam PF00107 Zinc-binding dehydrogenase 182 296 4.8E-16 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 SMART SM00829 44 361 9.4E-5 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 395 505 7.0E-17 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 Gene3D G3DSA:3.40.50.720 391 522 6.9E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 Gene3D G3DSA:3.40.50.720 176 287 4.1E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 SUPERFAMILY SSF50129 8 55 1.73E-17 T 23-04-2016 IPR011032 GroES-like NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 SUPERFAMILY SSF50129 87 180 1.73E-17 T 23-04-2016 IPR011032 GroES-like NIDE_RS11045 d0af4f27155cddabd33630cce0d90a8e 716 Gene3D G3DSA:3.30.360.10 523 713 1.1E-25 T 23-04-2016 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 Gene3D G3DSA:1.10.530.10 606 742 1.1E-42 T 23-04-2016 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 Pfam PF01464 Transglycosylase SLT domain 604 713 5.0E-28 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 Pfam PF13432 Tetratricopeptide repeat 373 426 1.5E-5 T 23-04-2016 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 Pfam PF13432 Tetratricopeptide repeat 270 317 3.3E-6 T 23-04-2016 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 Gene3D G3DSA:1.25.40.10 334 436 6.9E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 SUPERFAMILY SSF53955 605 741 3.52E-39 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 Pfam PF14559 Tetratricopeptide repeat 181 240 1.6E-5 T 23-04-2016 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 SMART SM00028 197 230 490.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 SMART SM00028 253 286 160.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 SMART SM00028 362 395 74.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 SMART SM00028 290 322 60.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 SMART SM00028 399 432 99.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 SMART SM00028 160 193 420.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 Gene3D G3DSA:1.25.40.10 128 333 3.3E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 PANTHER PTHR21666 580 743 5.7E-37 T 23-04-2016 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 SUPERFAMILY SSF48452 125 245 7.59E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 SUPERFAMILY SSF48452 194 323 1.9E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17030 27bad818fd356696da7ac204e3cc18b7 745 SUPERFAMILY SSF48452 362 429 1.9E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS04780 c596acea698020463df495dbea2e32d3 343 Gene3D G3DSA:3.40.190.10 135 274 2.2E-41 T 23-04-2016 NIDE_RS04780 c596acea698020463df495dbea2e32d3 343 Pfam PF13343 Bacterial extracellular solute-binding protein 82 314 7.6E-21 T 23-04-2016 NIDE_RS04780 c596acea698020463df495dbea2e32d3 343 PANTHER PTHR30006 1 340 9.4E-68 T 23-04-2016 NIDE_RS04780 c596acea698020463df495dbea2e32d3 343 PIRSF PIRSF002825 3 343 8.6E-90 T 23-04-2016 IPR026045 Ferric binding protein NIDE_RS04780 c596acea698020463df495dbea2e32d3 343 SUPERFAMILY SSF53850 30 337 1.5E-66 T 23-04-2016 NIDE_RS04780 c596acea698020463df495dbea2e32d3 343 Gene3D G3DSA:3.40.190.10 275 328 1.1E-30 T 23-04-2016 NIDE_RS04780 c596acea698020463df495dbea2e32d3 343 Gene3D G3DSA:3.40.190.10 7 129 1.1E-30 T 23-04-2016 NIDE_RS04780 c596acea698020463df495dbea2e32d3 343 PANTHER PTHR30006:SF4 1 340 9.4E-68 T 23-04-2016 NIDE_RS06405 4f6e2149d20af80d3d6e824f1e7ee025 409 PANTHER PTHR23515 10 394 6.1E-98 T 23-04-2016 NIDE_RS06405 4f6e2149d20af80d3d6e824f1e7ee025 409 SUPERFAMILY SSF103473 10 395 4.19E-50 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS06405 4f6e2149d20af80d3d6e824f1e7ee025 409 Pfam PF07690 Major Facilitator Superfamily 24 327 2.8E-28 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS06405 4f6e2149d20af80d3d6e824f1e7ee025 409 Gene3D G3DSA:1.20.1250.20 215 388 4.8E-20 T 23-04-2016 NIDE_RS06405 4f6e2149d20af80d3d6e824f1e7ee025 409 PANTHER PTHR23515:SF4 10 394 6.1E-98 T 23-04-2016 NIDE_RS06405 4f6e2149d20af80d3d6e824f1e7ee025 409 Gene3D G3DSA:1.20.1250.20 15 194 5.9E-17 T 23-04-2016 NIDE_RS12535 1734662e6879c90c9695d1e095f3180f 843 Gene3D G3DSA:3.60.15.10 548 786 1.1E-23 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS12535 1734662e6879c90c9695d1e095f3180f 843 Pfam PF00753 Metallo-beta-lactamase superfamily 554 628 4.2E-9 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS12535 1734662e6879c90c9695d1e095f3180f 843 PANTHER PTHR30619:SF2 2 839 2.8E-139 T 23-04-2016 NIDE_RS12535 1734662e6879c90c9695d1e095f3180f 843 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 245 443 3.0E-19 T 23-04-2016 IPR004477 ComEC/Rec2-related protein NIDE_RS12535 1734662e6879c90c9695d1e095f3180f 843 SMART SM00849 557 764 1.8E-4 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS12535 1734662e6879c90c9695d1e095f3180f 843 SUPERFAMILY SSF56281 546 796 4.06E-38 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS12535 1734662e6879c90c9695d1e095f3180f 843 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 136 793 2.6E-80 T 23-04-2016 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 NIDE_RS12535 1734662e6879c90c9695d1e095f3180f 843 Pfam PF13567 Domain of unknown function (DUF4131) 10 178 1.4E-17 T 23-04-2016 IPR025405 Domain of unknown function DUF4131 NIDE_RS12535 1734662e6879c90c9695d1e095f3180f 843 PANTHER PTHR30619 2 839 2.8E-139 T 23-04-2016 NIDE_RS12535 1734662e6879c90c9695d1e095f3180f 843 Pfam PF03772 Competence protein 224 512 2.7E-48 T 23-04-2016 IPR004477 ComEC/Rec2-related protein NIDE_RS06895 a9350b8ba7d9b731b1d12d1db800f147 153 Gene3D G3DSA:3.40.50.2300 8 134 2.4E-34 T 23-04-2016 NIDE_RS06895 a9350b8ba7d9b731b1d12d1db800f147 153 PANTHER PTHR26402:SF539 9 134 3.8E-37 T 23-04-2016 NIDE_RS06895 a9350b8ba7d9b731b1d12d1db800f147 153 SUPERFAMILY SSF52172 7 136 3.42E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS06895 a9350b8ba7d9b731b1d12d1db800f147 153 SMART SM00448 9 131 5.6E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS06895 a9350b8ba7d9b731b1d12d1db800f147 153 Pfam PF00072 Response regulator receiver domain 11 131 4.3E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS06895 a9350b8ba7d9b731b1d12d1db800f147 153 PANTHER PTHR26402 9 134 3.8E-37 T 23-04-2016 NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 PIRSF PIRSF005651 1 286 4.5E-101 T 23-04-2016 IPR010200 HflC GO:0016021|GO:0052547 NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 TIGRFAM TIGR01932 hflC: HflC protein 143 284 2.1E-40 T 23-04-2016 IPR010200 HflC GO:0016021|GO:0052547 NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 SUPERFAMILY SSF117892 55 192 4.71E-30 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 PANTHER PTHR10264:SF80 5 285 1.1E-84 T 23-04-2016 NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 Pfam PF01145 SPFH domain / Band 7 family 27 200 7.6E-33 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 PRINTS PR00721 Stomatin signature 161 179 9.4E-11 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 PRINTS PR00721 Stomatin signature 30 52 9.4E-11 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 PRINTS PR00721 Stomatin signature 78 99 9.4E-11 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 PRINTS PR00721 Stomatin signature 180 201 9.4E-11 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 PANTHER PTHR10264 5 285 1.1E-84 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS16965 fd0cae4ceccd4355d13bdd9255d25f68 286 SMART SM00244 23 185 1.0E-33 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS07325 7634dd0c466b44ac4ee291fb603fe9bc 303 Pfam PF13474 SnoaL-like domain 42 162 7.6E-12 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain NIDE_RS07325 7634dd0c466b44ac4ee291fb603fe9bc 303 SUPERFAMILY SSF54427 40 163 3.34E-11 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS07325 7634dd0c466b44ac4ee291fb603fe9bc 303 Gene3D G3DSA:3.10.450.50 40 170 4.2E-6 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS20250 59d0cd340d686c01343a4825bfee7447 179 Pfam PF03745 Domain of unknown function (DUF309) 64 123 7.6E-15 T 23-04-2016 IPR005500 Protein of unknown function DUF309 NIDE_RS20250 59d0cd340d686c01343a4825bfee7447 179 Gene3D G3DSA:1.10.3450.10 29 169 4.3E-30 T 23-04-2016 IPR023203 TTHA0068-like domain NIDE_RS20250 59d0cd340d686c01343a4825bfee7447 179 SUPERFAMILY SSF140663 50 153 4.32E-25 T 23-04-2016 IPR023203 TTHA0068-like domain NIDE_RS02395 d46d3e8ede4e9326431f9ee6abfa49a4 259 Pfam PF01061 ABC-2 type transporter 7 220 6.1E-31 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 NIDE_RS02395 d46d3e8ede4e9326431f9ee6abfa49a4 259 PANTHER PTHR30294:SF13 3 259 6.6E-48 T 23-04-2016 NIDE_RS02395 d46d3e8ede4e9326431f9ee6abfa49a4 259 PIRSF PIRSF006648 2 259 6.1E-58 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS02395 d46d3e8ede4e9326431f9ee6abfa49a4 259 PANTHER PTHR30294 3 259 6.6E-48 T 23-04-2016 NIDE_RS02395 d46d3e8ede4e9326431f9ee6abfa49a4 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 179 198 7.0E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS02395 d46d3e8ede4e9326431f9ee6abfa49a4 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 59 81 7.0E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS02395 d46d3e8ede4e9326431f9ee6abfa49a4 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 199 218 7.0E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS04960 6645bbb4c226395f1ba8f4c2b22b8a49 367 SUPERFAMILY SSF142754 27 365 3.27E-95 T 23-04-2016 NIDE_RS04960 6645bbb4c226395f1ba8f4c2b22b8a49 367 PANTHER PTHR30573 12 367 3.2E-147 T 23-04-2016 NIDE_RS04960 6645bbb4c226395f1ba8f4c2b22b8a49 367 Pfam PF02445 Quinolinate synthetase A protein 28 364 1.1E-106 T 23-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 NIDE_RS04960 6645bbb4c226395f1ba8f4c2b22b8a49 367 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 18 367 1.3E-96 T 23-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 NIDE_RS04960 6645bbb4c226395f1ba8f4c2b22b8a49 367 PANTHER PTHR30573:SF0 12 367 3.2E-147 T 23-04-2016 NIDE_RS04960 6645bbb4c226395f1ba8f4c2b22b8a49 367 Hamap MF_00569 Quinolinate synthase A [nadA]. 18 366 51.493 T 23-04-2016 IPR023515 Quinolinate synthase A, type 3 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 NIDE_RS05735 2a0cac1481a9146cc96e3003d3e53218 90 Gene3D G3DSA:3.30.70.20 26 80 9.1E-11 T 23-04-2016 NIDE_RS05735 2a0cac1481a9146cc96e3003d3e53218 90 SUPERFAMILY SSF54862 22 81 1.77E-13 T 23-04-2016 NIDE_RS05735 2a0cac1481a9146cc96e3003d3e53218 90 Pfam PF12837 4Fe-4S binding domain 53 74 4.5E-6 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS04250 37224fc1f7546a56a78c139610616740 292 SUPERFAMILY SSF51197 2 283 2.56E-71 T 23-04-2016 NIDE_RS04250 37224fc1f7546a56a78c139610616740 292 Gene3D G3DSA:3.60.130.10 2 284 1.7E-73 T 23-04-2016 NIDE_RS04250 37224fc1f7546a56a78c139610616740 292 PANTHER PTHR30468:SF18 2 282 2.3E-57 T 23-04-2016 NIDE_RS04250 37224fc1f7546a56a78c139610616740 292 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 4 275 6.3E-57 T 23-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 NIDE_RS04250 37224fc1f7546a56a78c139610616740 292 PANTHER PTHR30468 2 282 2.3E-57 T 23-04-2016 NIDE_RS18485 2acbff04551e90cc1b6f60799e8a4895 184 Pfam PF06884 Protein of unknown function (DUF1264) 50 163 1.1E-15 T 23-04-2016 IPR010686 Protein of unknown function DUF1264 NIDE_RS18485 2acbff04551e90cc1b6f60799e8a4895 184 PANTHER PTHR31360 70 160 5.6E-12 T 23-04-2016 NIDE_RS19100 0fddb431a9a6f7d559e4dd0a4a66cd21 253 SUPERFAMILY SSF53474 21 249 3.89E-43 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS19100 0fddb431a9a6f7d559e4dd0a4a66cd21 253 Gene3D G3DSA:3.40.50.1820 29 249 1.4E-42 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS19100 0fddb431a9a6f7d559e4dd0a4a66cd21 253 PANTHER PTHR12277 8 247 2.2E-62 T 23-04-2016 NIDE_RS19100 0fddb431a9a6f7d559e4dd0a4a66cd21 253 Pfam PF12146 Serine aminopeptidase, S33 53 152 1.0E-9 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 NIDE_RS12820 ed9b7eb84c56e26a2528ba93bd634d9d 102 PANTHER PTHR33930:SF5 1 100 1.4E-31 T 23-04-2016 NIDE_RS12820 ed9b7eb84c56e26a2528ba93bd634d9d 102 SUPERFAMILY SSF69118 10 100 3.01E-24 T 23-04-2016 IPR029032 AhpD-like NIDE_RS12820 ed9b7eb84c56e26a2528ba93bd634d9d 102 Gene3D G3DSA:1.20.1290.10 9 99 3.2E-29 T 23-04-2016 IPR029032 AhpD-like NIDE_RS12820 ed9b7eb84c56e26a2528ba93bd634d9d 102 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 35 85 6.2E-15 T 23-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS12820 ed9b7eb84c56e26a2528ba93bd634d9d 102 Pfam PF02627 Carboxymuconolactone decarboxylase family 18 100 7.6E-20 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS12820 ed9b7eb84c56e26a2528ba93bd634d9d 102 PANTHER PTHR33930 1 100 1.4E-31 T 23-04-2016 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Gene3D G3DSA:1.10.287.130 653 721 6.2E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Gene3D G3DSA:3.30.450.20 85 181 1.8E-11 T 23-04-2016 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 SMART SM00448 910 1023 1.7E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 349 476 6.1E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Gene3D G3DSA:3.40.50.2300 909 1030 1.1E-28 T 23-04-2016 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Gene3D G3DSA:3.30.450.40 466 651 1.9E-20 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Gene3D G3DSA:3.30.450.20 341 465 1.2E-26 T 23-04-2016 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Gene3D G3DSA:3.30.565.10 729 887 1.1E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Pfam PF00989 PAS fold 353 466 1.1E-11 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 768 888 6.7E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 SMART SM00091 352 419 6.0E-8 T 23-04-2016 IPR000014 PAS domain NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 SMART SM00387 767 890 2.5E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 SUPERFAMILY SSF55781 460 625 5.45E-16 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 PANTHER PTHR24423 636 1029 3.3E-166 T 23-04-2016 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 PANTHER PTHR24423 31 603 3.3E-166 T 23-04-2016 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Pfam PF00512 His Kinase A (phospho-acceptor) domain 660 722 2.6E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 PANTHER PTHR24423:SF458 636 1029 3.3E-166 T 23-04-2016 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 PANTHER PTHR24423:SF458 31 603 3.3E-166 T 23-04-2016 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 SUPERFAMILY SSF47384 648 722 1.02E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 SUPERFAMILY SSF55874 715 889 2.1E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Pfam PF00072 Response regulator receiver domain 912 1023 4.0E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 SUPERFAMILY SSF55785 363 476 1.61E-27 T 23-04-2016 IPR000014 PAS domain NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 SMART SM00388 659 725 5.2E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 SUPERFAMILY SSF103190 75 185 9.81E-7 T 23-04-2016 IPR029151 Periplasmic sensor domain-like NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 PRINTS PR00344 Bacterial sensor protein C-terminal signature 874 887 1.3E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 PRINTS PR00344 Bacterial sensor protein C-terminal signature 819 833 1.3E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 PRINTS PR00344 Bacterial sensor protein C-terminal signature 850 868 1.3E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 PRINTS PR00344 Bacterial sensor protein C-terminal signature 837 847 1.3E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 SUPERFAMILY SSF52172 910 1028 1.24E-24 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20970 2c7247aa69728fadeb1e1dec525dc952 1033 Pfam PF13185 GAF domain 490 626 3.3E-12 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS19315 ccd66fe8a39bdc788fb8fbcc77dad9e6 364 SUPERFAMILY SSF48019 209 328 1.45E-20 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 NIDE_RS19315 ccd66fe8a39bdc788fb8fbcc77dad9e6 364 PANTHER PTHR34388 1 336 2.1E-63 T 23-04-2016 NIDE_RS19315 ccd66fe8a39bdc788fb8fbcc77dad9e6 364 Gene3D G3DSA:1.10.8.60 139 218 9.3E-18 T 23-04-2016 NIDE_RS19315 ccd66fe8a39bdc788fb8fbcc77dad9e6 364 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 15 326 2.5E-65 T 23-04-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 NIDE_RS19315 ccd66fe8a39bdc788fb8fbcc77dad9e6 364 Pfam PF06144 DNA polymerase III, delta subunit 18 184 1.1E-24 T 23-04-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 NIDE_RS19315 ccd66fe8a39bdc788fb8fbcc77dad9e6 364 Gene3D G3DSA:1.20.272.20 219 330 7.3E-10 T 23-04-2016 NIDE_RS19315 ccd66fe8a39bdc788fb8fbcc77dad9e6 364 SUPERFAMILY SSF52540 4 199 2.48E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19315 ccd66fe8a39bdc788fb8fbcc77dad9e6 364 Gene3D G3DSA:3.40.50.300 5 135 6.1E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09240 27c206c901b74ec4bd5fab0f30f77edc 470 SUPERFAMILY SSF49879 10 80 1.34E-17 T 23-04-2016 IPR008984 SMAD/FHA domain GO:0005515 NIDE_RS09240 27c206c901b74ec4bd5fab0f30f77edc 470 PANTHER PTHR21666 105 456 3.2E-15 T 23-04-2016 NIDE_RS09240 27c206c901b74ec4bd5fab0f30f77edc 470 SMART SM00240 11 61 1.8E-11 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 NIDE_RS09240 27c206c901b74ec4bd5fab0f30f77edc 470 SUPERFAMILY SSF53955 290 451 1.13E-23 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS09240 27c206c901b74ec4bd5fab0f30f77edc 470 Pfam PF01464 Transglycosylase SLT domain 301 413 2.3E-15 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 NIDE_RS09240 27c206c901b74ec4bd5fab0f30f77edc 470 Gene3D G3DSA:2.60.200.20 11 75 1.6E-17 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 NIDE_RS09240 27c206c901b74ec4bd5fab0f30f77edc 470 PANTHER PTHR21666:SF219 105 456 3.2E-15 T 23-04-2016 NIDE_RS09240 27c206c901b74ec4bd5fab0f30f77edc 470 Gene3D G3DSA:1.10.530.10 291 452 4.3E-25 T 23-04-2016 NIDE_RS09240 27c206c901b74ec4bd5fab0f30f77edc 470 Pfam PF00498 FHA domain 13 90 4.7E-14 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 NIDE_RS19950 068221dd3746d803b4492a55294476f1 224 PANTHER PTHR12126:SF1 2 219 2.1E-19 T 23-04-2016 NIDE_RS19950 068221dd3746d803b4492a55294476f1 224 Gene3D G3DSA:3.40.50.720 5 213 2.4E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19950 068221dd3746d803b4492a55294476f1 224 Pfam PF13460 NAD(P)H-binding 14 158 4.9E-16 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19950 068221dd3746d803b4492a55294476f1 224 SUPERFAMILY SSF51735 7 213 1.8E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19950 068221dd3746d803b4492a55294476f1 224 PANTHER PTHR12126 2 219 2.1E-19 T 23-04-2016 NIDE_RS08605 9d64ed59b6fe2e91dd703292cc55c8cd 730 PANTHER PTHR11918 207 516 3.0E-32 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS08605 9d64ed59b6fe2e91dd703292cc55c8cd 730 PANTHER PTHR11918:SF64 207 516 3.0E-32 T 23-04-2016 NIDE_RS08605 9d64ed59b6fe2e91dd703292cc55c8cd 730 Pfam PF04055 Radical SAM superfamily 353 513 3.7E-12 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS08605 9d64ed59b6fe2e91dd703292cc55c8cd 730 SUPERFAMILY SSF102114 317 529 1.57E-27 T 23-04-2016 NIDE_RS08605 9d64ed59b6fe2e91dd703292cc55c8cd 730 SMART SM00729 350 554 1.5E-15 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS08605 9d64ed59b6fe2e91dd703292cc55c8cd 730 Gene3D G3DSA:3.80.30.20 353 539 6.7E-25 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS17660 e7049071e0228d4f8e8efb673f64e9c0 412 PANTHER PTHR32154 1 376 4.2E-131 T 23-04-2016 NIDE_RS17660 e7049071e0228d4f8e8efb673f64e9c0 412 Gene3D G3DSA:3.40.50.920 254 393 1.5E-30 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS17660 e7049071e0228d4f8e8efb673f64e9c0 412 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 262 363 1.2E-22 T 23-04-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II NIDE_RS17660 e7049071e0228d4f8e8efb673f64e9c0 412 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 15 227 9.1E-54 T 23-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 NIDE_RS17660 e7049071e0228d4f8e8efb673f64e9c0 412 Gene3D G3DSA:3.40.50.970 3 251 1.0E-68 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS17660 e7049071e0228d4f8e8efb673f64e9c0 412 SUPERFAMILY SSF52518 1 251 2.77E-57 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS17660 e7049071e0228d4f8e8efb673f64e9c0 412 SUPERFAMILY SSF52922 253 376 1.54E-26 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS17660 e7049071e0228d4f8e8efb673f64e9c0 412 PANTHER PTHR32154:SF21 1 376 4.2E-131 T 23-04-2016 NIDE_RS03725 8ee19830169af45bb397ea725a4f5229 296 Gene3D G3DSA:3.20.20.220 6 294 2.5E-57 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like NIDE_RS03725 8ee19830169af45bb397ea725a4f5229 296 SUPERFAMILY SSF51730 7 293 2.35E-70 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like NIDE_RS03725 8ee19830169af45bb397ea725a4f5229 296 Pfam PF02219 Methylenetetrahydrofolate reductase 8 292 3.2E-44 T 23-04-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 NIDE_RS04980 5130a9ec720a02c2d5441d8d209e5e76 292 PANTHER PTHR30622:SF3 2 81 1.4E-96 T 23-04-2016 NIDE_RS04980 5130a9ec720a02c2d5441d8d209e5e76 292 PANTHER PTHR30622 99 291 1.4E-96 T 23-04-2016 NIDE_RS04980 5130a9ec720a02c2d5441d8d209e5e76 292 PANTHER PTHR30622 2 81 1.4E-96 T 23-04-2016 NIDE_RS04980 5130a9ec720a02c2d5441d8d209e5e76 292 Pfam PF02673 Bacitracin resistance protein BacA 10 286 3.7E-71 T 23-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 NIDE_RS04980 5130a9ec720a02c2d5441d8d209e5e76 292 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 291 16.858 T 23-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 NIDE_RS04980 5130a9ec720a02c2d5441d8d209e5e76 292 PANTHER PTHR30622:SF3 99 291 1.4E-96 T 23-04-2016 NIDE_RS01950 c3410688eb731c86eb65672c15b16f8a 298 SUPERFAMILY SSF48179 178 290 3.97E-30 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS01950 c3410688eb731c86eb65672c15b16f8a 298 Pfam PF02153 Prephenate dehydrogenase 22 278 1.1E-66 T 23-04-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 NIDE_RS01950 c3410688eb731c86eb65672c15b16f8a 298 Gene3D G3DSA:1.10.3660.10 229 290 3.4E-4 T 23-04-2016 NIDE_RS01950 c3410688eb731c86eb65672c15b16f8a 298 Gene3D G3DSA:3.40.50.720 1 184 1.8E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS01950 c3410688eb731c86eb65672c15b16f8a 298 PANTHER PTHR21363 1 288 1.1E-70 T 23-04-2016 NIDE_RS01950 c3410688eb731c86eb65672c15b16f8a 298 SUPERFAMILY SSF51735 8 174 1.17E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS01950 c3410688eb731c86eb65672c15b16f8a 298 PANTHER PTHR21363:SF0 1 288 1.1E-70 T 23-04-2016 NIDE_RS01780 dce8e66f69899384b53402eee06b5151 172 Pfam PF10881 Protein of unknown function (DUF2726) 46 166 1.7E-13 T 23-04-2016 IPR024402 Domain of unknown function DUF2726 NIDE_RS11220 0a3b263d24239254e4db9fd7b1065fd4 116 SUPERFAMILY SSF52833 4 116 1.19E-31 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS11220 0a3b263d24239254e4db9fd7b1065fd4 116 Pfam PF03960 ArsC family 42 113 1.6E-14 T 23-04-2016 IPR006660 Arsenate reductase-like NIDE_RS11220 0a3b263d24239254e4db9fd7b1065fd4 116 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 2.6E-32 T 23-04-2016 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 NIDE_RS11220 0a3b263d24239254e4db9fd7b1065fd4 116 Gene3D G3DSA:3.40.30.10 1 116 9.5E-40 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS11220 0a3b263d24239254e4db9fd7b1065fd4 116 PANTHER PTHR30041 1 116 7.7E-24 T 23-04-2016 NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 SMART SM00387 487 585 6.4E-4 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 PANTHER PTHR24423 1 581 2.2E-89 T 23-04-2016 NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 PANTHER PTHR24423:SF468 1 581 2.2E-89 T 23-04-2016 NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 SUPERFAMILY SSF55785 142 254 2.65E-26 T 23-04-2016 IPR000014 PAS domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 SMART SM00086 329 371 2.5E-10 T 23-04-2016 IPR001610 PAC motif NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 SMART SM00086 203 245 3.4E-4 T 23-04-2016 IPR001610 PAC motif NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 576 4.4E-6 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 SUPERFAMILY SSF55874 450 582 2.62E-14 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 Gene3D G3DSA:3.30.450.20 131 253 1.8E-28 T 23-04-2016 NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 Pfam PF13426 PAS domain 142 243 9.6E-18 T 23-04-2016 IPR000014 PAS domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 Gene3D G3DSA:3.30.450.20 254 369 8.5E-36 T 23-04-2016 NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 SMART SM00091 131 197 2.0E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 SMART SM00091 257 323 1.9E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 Pfam PF08447 PAS fold 280 364 6.8E-20 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 133 252 1.9E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 253 378 2.5E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 SUPERFAMILY SSF55785 246 369 5.64E-32 T 23-04-2016 IPR000014 PAS domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 Gene3D G3DSA:3.30.565.10 485 581 1.6E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS15625 0a56871877ad45012efa86f7008fdadd 590 Pfam PF07568 Histidine kinase 391 466 1.8E-28 T 23-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain NIDE_RS11040 48bc52a35c27279b105de3ddc8261ca5 274 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 91 266 1.1E-7 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain NIDE_RS11040 48bc52a35c27279b105de3ddc8261ca5 274 SUPERFAMILY SSF52540 87 263 4.18E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11040 48bc52a35c27279b105de3ddc8261ca5 274 PANTHER PTHR32309 73 258 2.0E-33 T 23-04-2016 NIDE_RS11040 48bc52a35c27279b105de3ddc8261ca5 274 Gene3D G3DSA:3.40.50.300 84 261 1.1E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11040 48bc52a35c27279b105de3ddc8261ca5 274 PANTHER PTHR32309:SF13 73 258 2.0E-33 T 23-04-2016 NIDE_RS18715 9f34ee1bf444a74e50744f3fd4bf58ec 248 SUPERFAMILY SSF55315 2 72 1.65E-14 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like NIDE_RS18715 9f34ee1bf444a74e50744f3fd4bf58ec 248 PANTHER PTHR12029 1 241 1.1E-78 T 23-04-2016 NIDE_RS18715 9f34ee1bf444a74e50744f3fd4bf58ec 248 Gene3D G3DSA:3.30.1330.30 2 71 1.0E-17 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like NIDE_RS18715 9f34ee1bf444a74e50744f3fd4bf58ec 248 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 2 240 1.4E-64 T 23-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 NIDE_RS18715 9f34ee1bf444a74e50744f3fd4bf58ec 248 SMART SM00967 3 77 2.8E-19 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 NIDE_RS18715 9f34ee1bf444a74e50744f3fd4bf58ec 248 Pfam PF00588 SpoU rRNA Methylase family 94 234 9.3E-40 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 NIDE_RS18715 9f34ee1bf444a74e50744f3fd4bf58ec 248 SUPERFAMILY SSF75217 66 241 6.08E-51 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases NIDE_RS18715 9f34ee1bf444a74e50744f3fd4bf58ec 248 Gene3D G3DSA:3.40.1280.10 88 241 3.9E-55 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIDE_RS18715 9f34ee1bf444a74e50744f3fd4bf58ec 248 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 3 76 2.4E-17 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 NIDE_RS16275 ef87c5959fa332a82628568371792ef1 144 SUPERFAMILY SSF55620 1 130 3.11E-36 T 23-04-2016 NIDE_RS16275 ef87c5959fa332a82628568371792ef1 144 Gene3D G3DSA:3.30.479.10 1 130 1.9E-38 T 23-04-2016 NIDE_RS16275 ef87c5959fa332a82628568371792ef1 144 PANTHER PTHR12589:SF1 1 136 4.7E-46 T 23-04-2016 NIDE_RS16275 ef87c5959fa332a82628568371792ef1 144 ProSitePatterns PS00987 6-pyruvoyl tetrahydropterin synthase signature 1. 30 40 - T 23-04-2016 IPR022470 6-pyruvoyl tetrahydropterin synthase, cysteine active site GO:0003874|GO:0006729 KEGG: 00790+4.2.3.12|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00849 NIDE_RS16275 ef87c5959fa332a82628568371792ef1 144 PANTHER PTHR12589 1 136 4.7E-46 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein NIDE_RS16275 ef87c5959fa332a82628568371792ef1 144 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 1 130 8.2E-28 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein NIDE_RS12855 ffff6fbcd7ae5bcaa005b8b9ed016793 218 Pfam PF11172 Protein of unknown function (DUF2959) 18 213 1.3E-88 T 23-04-2016 IPR021342 Protein of unknown function DUF2959 NIDE_RS18840 e941ee4648a8fd7b3e322b3367379ec0 93 PANTHER PTHR36441 2 93 1.6E-26 T 23-04-2016 NIDE_RS18840 e941ee4648a8fd7b3e322b3367379ec0 93 Pfam PF04456 Protein of unknown function (DUF503) 3 89 3.6E-34 T 23-04-2016 IPR007546 Protein of unknown function DUF503 NIDE_RS18840 e941ee4648a8fd7b3e322b3367379ec0 93 Gene3D G3DSA:3.30.70.1120 1 93 1.5E-36 T 23-04-2016 IPR007546 Protein of unknown function DUF503 NIDE_RS18840 e941ee4648a8fd7b3e322b3367379ec0 93 SUPERFAMILY SSF103007 1 93 1.83E-31 T 23-04-2016 IPR007546 Protein of unknown function DUF503 NIDE_RS00045 56065cb33fa0589419015fb37a6a9a9b 285 SUPERFAMILY SSF51735 3 251 2.1E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00045 56065cb33fa0589419015fb37a6a9a9b 285 Pfam PF13460 NAD(P)H-binding 6 186 8.0E-16 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00045 56065cb33fa0589419015fb37a6a9a9b 285 Gene3D G3DSA:3.40.50.720 3 222 4.3E-31 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00045 56065cb33fa0589419015fb37a6a9a9b 285 PANTHER PTHR14194 3 257 2.0E-34 T 23-04-2016 NIDE_RS01305 388c5507d80a54cbcecb746243731287 283 Pfam PF13181 Tetratricopeptide repeat 199 229 7.3E-6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS01305 388c5507d80a54cbcecb746243731287 283 Gene3D G3DSA:1.25.40.10 139 268 8.9E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS01305 388c5507d80a54cbcecb746243731287 283 PANTHER PTHR23083 144 259 7.7E-13 T 23-04-2016 NIDE_RS01305 388c5507d80a54cbcecb746243731287 283 SUPERFAMILY SSF48452 158 259 2.4E-16 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS01305 388c5507d80a54cbcecb746243731287 283 SMART SM00028 197 230 1.4E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS01305 388c5507d80a54cbcecb746243731287 283 SMART SM00028 163 196 2.6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 Pfam PF14559 Tetratricopeptide repeat 221 277 1.3E-5 T 23-04-2016 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 SUPERFAMILY SSF48452 79 277 1.1E-39 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 Pfam PF13181 Tetratricopeptide repeat 79 108 0.025 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 Pfam PF13414 TPR repeat 189 219 6.5E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 Pfam PF13414 TPR repeat 119 157 3.5E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 Gene3D G3DSA:1.25.40.10 76 296 5.6E-58 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 SMART SM00028 211 244 0.042 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 SMART SM00028 109 142 0.021 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 SMART SM00028 177 210 3.0E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 SMART SM00028 245 278 110.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 SMART SM00028 75 108 0.079 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 SMART SM00028 143 176 0.0033 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20890 d97e34fb078e2f11b41bfb65dc533e02 298 PANTHER PTHR23083 78 285 2.1E-50 T 23-04-2016 NIDE_RS08275 bd3b9687b5aa5098e4160f1fcfae5728 385 SUPERFAMILY SSF56954 2 381 7.19E-71 T 23-04-2016 NIDE_RS08275 bd3b9687b5aa5098e4160f1fcfae5728 385 Pfam PF02321 Outer membrane efflux protein 202 380 1.5E-27 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS08275 bd3b9687b5aa5098e4160f1fcfae5728 385 Pfam PF02321 Outer membrane efflux protein 2 176 8.0E-25 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS08275 bd3b9687b5aa5098e4160f1fcfae5728 385 Gene3D G3DSA:1.20.1600.10 3 380 2.7E-60 T 23-04-2016 NIDE_RS08275 bd3b9687b5aa5098e4160f1fcfae5728 385 PANTHER PTHR30203:SF1 5 381 7.2E-57 T 23-04-2016 NIDE_RS08275 bd3b9687b5aa5098e4160f1fcfae5728 385 PANTHER PTHR30203 5 381 7.2E-57 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 SUPERFAMILY SSF109604 428 548 1.04E-13 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 Gene3D G3DSA:3.30.460.10 43 95 8.8E-5 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 SUPERFAMILY SSF81301 31 178 6.54E-27 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 SUPERFAMILY SSF81593 206 313 1.1E-8 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 Gene3D G3DSA:3.30.70.260 813 880 6.2E-9 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 SUPERFAMILY SSF55021 712 753 8.74E-5 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 PANTHER PTHR13734:SF45 109 696 1.7E-67 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 PIRSF PIRSF006288 3 892 2.4E-235 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 PANTHER PTHR13734 109 696 1.7E-67 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 894 180.5 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 SUPERFAMILY SSF55021 812 883 5.83E-8 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 Pfam PF01966 HD domain 463 555 4.3E-8 T 23-04-2016 IPR006674 HD domain NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 Gene3D G3DSA:1.10.3210.10 433 612 1.0E-18 T 23-04-2016 IPR006674 HD domain NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 Gene3D G3DSA:3.30.460.10 96 171 7.2E-7 T 23-04-2016 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 SMART SM00471 459 601 7.3E-4 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 28 885 1.8E-203 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 NIDE_RS06310 3c9f2c4b0a87fe7b989de3fc863936da 894 Pfam PF08335 GlnD PII-uridylyltransferase 187 319 4.3E-26 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 NIDE_RS02290 2a8ca10d80605a8d20b8faf324844659 142 SUPERFAMILY SSF101386 26 86 1.27E-9 T 23-04-2016 NIDE_RS02290 2a8ca10d80605a8d20b8faf324844659 142 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 8 90 2.9E-24 T 23-04-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 NIDE_RS02290 2a8ca10d80605a8d20b8faf324844659 142 Gene3D G3DSA:1.10.3420.10 3 122 2.1E-33 T 23-04-2016 IPR023292 NTP pyrophosphohydrolase-like domain NIDE_RS17220 44835a2dbcea4acf8cf82304d650ccbd 361 SUPERFAMILY SSF56112 39 331 4.08E-16 T 23-04-2016 IPR011009 Protein kinase-like domain NIDE_RS17220 44835a2dbcea4acf8cf82304d650ccbd 361 Pfam PF01636 Phosphotransferase enzyme family 119 268 1.2E-11 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase NIDE_RS17220 44835a2dbcea4acf8cf82304d650ccbd 361 Gene3D G3DSA:3.90.1200.10 152 310 1.0E-11 T 23-04-2016 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 Gene3D G3DSA:3.40.190.10 33 146 2.5E-19 T 23-04-2016 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 SUPERFAMILY SSF53850 32 347 1.78E-84 T 23-04-2016 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PIRSF PIRSF019574 1 349 1.0E-110 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 250 269 1.5E-55 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 36 52 1.5E-55 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 151 165 1.5E-55 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 52 73 1.5E-55 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 126 142 1.5E-55 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 169 188 1.5E-55 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 79 93 1.5E-55 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 295 321 1.5E-55 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 206 225 1.5E-55 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 95 108 1.5E-55 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PANTHER PTHR30222 29 347 1.3E-93 T 23-04-2016 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 Pfam PF13416 Bacterial extracellular solute-binding protein 45 315 2.6E-30 T 23-04-2016 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 Gene3D G3DSA:3.40.190.10 147 298 2.0E-52 T 23-04-2016 NIDE_RS08270 c18b13dfd32d8070b556ad42aa1b28df 349 PANTHER PTHR30222:SF5 29 347 1.3E-93 T 23-04-2016 NIDE_RS14725 ac7991d38c57b17d839c6ca8baf2cd06 297 SUPERFAMILY SSF52821 1 146 9.04E-32 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS14725 ac7991d38c57b17d839c6ca8baf2cd06 297 PANTHER PTHR11364 1 292 2.0E-67 T 23-04-2016 NIDE_RS14725 ac7991d38c57b17d839c6ca8baf2cd06 297 SUPERFAMILY SSF52821 158 275 1.14E-29 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS14725 ac7991d38c57b17d839c6ca8baf2cd06 297 Pfam PF00581 Rhodanese-like domain 10 121 2.6E-16 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS14725 ac7991d38c57b17d839c6ca8baf2cd06 297 Pfam PF00581 Rhodanese-like domain 153 266 4.0E-15 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS14725 ac7991d38c57b17d839c6ca8baf2cd06 297 Gene3D G3DSA:3.40.250.10 2 141 1.2E-33 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS14725 ac7991d38c57b17d839c6ca8baf2cd06 297 Gene3D G3DSA:3.40.250.10 148 275 3.5E-29 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS14725 ac7991d38c57b17d839c6ca8baf2cd06 297 SMART SM00450 7 126 3.6E-15 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS14725 ac7991d38c57b17d839c6ca8baf2cd06 297 SMART SM00450 151 270 8.3E-20 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS07355 09e08f9721f1441a50128ead25fc4346 139 Gene3D G3DSA:1.25.40.10 32 104 5.7E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS07355 09e08f9721f1441a50128ead25fc4346 139 SMART SM00028 33 66 0.028 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS07355 09e08f9721f1441a50128ead25fc4346 139 SMART SM00028 67 100 26.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS07355 09e08f9721f1441a50128ead25fc4346 139 SUPERFAMILY SSF48452 31 105 9.8E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS07355 09e08f9721f1441a50128ead25fc4346 139 Pfam PF14559 Tetratricopeptide repeat 45 96 7.9E-7 T 23-04-2016 NIDE_RS16285 5067789636411802fcf35ba8307fdee1 118 Gene3D G3DSA:3.10.20.30 9 97 9.8E-24 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS16285 5067789636411802fcf35ba8307fdee1 118 PANTHER PTHR23426 1 116 4.9E-19 T 23-04-2016 NIDE_RS16285 5067789636411802fcf35ba8307fdee1 118 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 86 1.0E-11 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NIDE_RS16285 5067789636411802fcf35ba8307fdee1 118 SUPERFAMILY SSF54292 9 97 4.85E-22 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 NIDE_RS16285 5067789636411802fcf35ba8307fdee1 118 PRINTS PR00355 Adrenodoxin signature 37 47 8.1E-6 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 NIDE_RS16285 5067789636411802fcf35ba8307fdee1 118 PRINTS PR00355 Adrenodoxin signature 55 69 8.1E-6 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 NIDE_RS16285 5067789636411802fcf35ba8307fdee1 118 PRINTS PR00355 Adrenodoxin signature 78 86 8.1E-6 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 NIDE_RS11160 7d651733d54e388719e1cee90fc1a50f 428 SUPERFAMILY SSF56935 57 406 3.66E-9 T 23-04-2016 NIDE_RS11160 7d651733d54e388719e1cee90fc1a50f 428 Gene3D G3DSA:2.40.160.10 57 425 6.0E-22 T 23-04-2016 IPR023614 Porin domain NIDE_RS11160 7d651733d54e388719e1cee90fc1a50f 428 Pfam PF07396 Phosphate-selective porin O and P 68 425 1.2E-24 T 23-04-2016 IPR010870 Phosphate-selective porin O/P NIDE_RS09200 fdf611ec05fc99e03e0b7ae95a78a31e 276 Gene3D G3DSA:3.30.420.10 111 261 3.6E-35 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09200 fdf611ec05fc99e03e0b7ae95a78a31e 276 PANTHER PTHR32552 13 264 5.7E-27 T 23-04-2016 NIDE_RS09200 fdf611ec05fc99e03e0b7ae95a78a31e 276 SUPERFAMILY SSF53098 110 270 1.52E-48 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09200 fdf611ec05fc99e03e0b7ae95a78a31e 276 Pfam PF13276 HTH-like domain 37 89 1.9E-9 T 23-04-2016 IPR025948 HTH-like domain NIDE_RS09200 fdf611ec05fc99e03e0b7ae95a78a31e 276 Pfam PF00665 Integrase core domain 112 222 9.6E-24 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS09690 38a6f756caa3e6369efd53f6634bc38c 100 Gene3D G3DSA:3.30.750.24 2 99 6.1E-19 T 23-04-2016 IPR002645 STAS domain NIDE_RS09690 38a6f756caa3e6369efd53f6634bc38c 100 SUPERFAMILY SSF52091 2 99 2.75E-20 T 23-04-2016 IPR002645 STAS domain NIDE_RS09690 38a6f756caa3e6369efd53f6634bc38c 100 Pfam PF13466 STAS domain 19 93 1.5E-10 T 23-04-2016 IPR002645 STAS domain NIDE_RS03045 b4e240c3113dad4943d0dc4e59d5994f 386 Pfam PF13173 AAA domain 19 135 2.4E-22 T 23-04-2016 NIDE_RS03045 b4e240c3113dad4943d0dc4e59d5994f 386 Pfam PF13635 Domain of unknown function (DUF4143) 202 327 2.4E-23 T 23-04-2016 IPR025420 Domain of unknown function DUF4143 NIDE_RS03045 b4e240c3113dad4943d0dc4e59d5994f 386 PANTHER PTHR33295 1 383 1.0E-90 T 23-04-2016 NIDE_RS03045 b4e240c3113dad4943d0dc4e59d5994f 386 Gene3D G3DSA:3.40.50.300 7 30 8.2E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03045 b4e240c3113dad4943d0dc4e59d5994f 386 Gene3D G3DSA:3.40.50.300 127 143 8.2E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03045 b4e240c3113dad4943d0dc4e59d5994f 386 SUPERFAMILY SSF52540 2 135 2.88E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03045 b4e240c3113dad4943d0dc4e59d5994f 386 PANTHER PTHR33295:SF4 1 383 1.0E-90 T 23-04-2016 NIDE_RS03045 b4e240c3113dad4943d0dc4e59d5994f 386 Gene3D G3DSA:3.40.50.300 31 79 2.3E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10735 f4e888f0d290b012347e53bfb1f85ac9 463 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 105 6.2E-22 T 23-04-2016 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 NIDE_RS10735 f4e888f0d290b012347e53bfb1f85ac9 463 Pfam PF07196 Flagellin hook IN motif 129 186 3.0E-10 T 23-04-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 NIDE_RS10735 f4e888f0d290b012347e53bfb1f85ac9 463 PANTHER PTHR30288:SF0 1 462 4.7E-75 T 23-04-2016 NIDE_RS10735 f4e888f0d290b012347e53bfb1f85ac9 463 PANTHER PTHR30288 1 462 4.7E-75 T 23-04-2016 NIDE_RS10735 f4e888f0d290b012347e53bfb1f85ac9 463 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 220 454 3.5E-44 T 23-04-2016 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 NIDE_RS13275 05d78edc60270d93b132994efbdd43e9 203 Gene3D G3DSA:1.10.10.10 129 201 5.0E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS13275 05d78edc60270d93b132994efbdd43e9 203 SMART SM00421 143 200 4.9E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS13275 05d78edc60270d93b132994efbdd43e9 203 SUPERFAMILY SSF46894 131 200 2.55E-16 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS13275 05d78edc60270d93b132994efbdd43e9 203 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS13275 05d78edc60270d93b132994efbdd43e9 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 1.1E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS13275 05d78edc60270d93b132994efbdd43e9 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 1.1E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS13275 05d78edc60270d93b132994efbdd43e9 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 1.1E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS13275 05d78edc60270d93b132994efbdd43e9 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 194 9.7E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 PANTHER PTHR18866 16 627 1.5E-220 T 23-04-2016 NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 PANTHER PTHR18866:SF109 16 627 1.5E-220 T 23-04-2016 NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 583 600 - T 23-04-2016 IPR001882 Biotin-binding site NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 SUPERFAMILY SSF89000 310 467 9.02E-49 T 23-04-2016 NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 Pfam PF02436 Conserved carboxylase domain 305 501 1.3E-53 T 23-04-2016 IPR003379 Carboxylase, conserved domain NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 SUPERFAMILY SSF51569 16 313 3.66E-88 T 23-04-2016 NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 Pfam PF00682 HMGL-like 20 282 2.7E-49 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 Gene3D G3DSA:2.40.50.100 555 626 5.5E-23 T 23-04-2016 NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 20 622 1.2E-241 T 23-04-2016 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 SUPERFAMILY SSF51230 552 627 5.23E-20 T 23-04-2016 IPR011053 Single hybrid motif NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 Pfam PF00364 Biotin-requiring enzyme 561 625 2.7E-17 T 23-04-2016 IPR000089 Biotin/lipoyl attachment NIDE_RS05560 052c33663729a9122979d3688e8b7c78 627 Gene3D G3DSA:3.20.20.70 16 296 1.1E-112 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 SUPERFAMILY SSF52016 528 746 9.22E-58 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PANTHER PTHR11670:SF30 10 745 0.0 T 23-04-2016 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 ProSitePatterns PS01244 Aconitase family signature 2. 411 424 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 TIGRFAM TIGR01340 aconitase_mito: aconitate hydratase, mitochondrial 10 747 0.0 T 23-04-2016 IPR006248 Aconitase, mitochondrial-like GO:0003994|GO:0006099|GO:0051539 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 Gene3D G3DSA:3.40.1060.10 195 313 2.5E-37 T 23-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 ProSitePatterns PS00450 Aconitase family signature 1. 348 364 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PRINTS PR00415 Aconitase family signature 352 363 2.0E-37 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PRINTS PR00415 Aconitase family signature 162 177 2.0E-37 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PRINTS PR00415 Aconitase family signature 105 118 2.0E-37 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PRINTS PR00415 Aconitase family signature 318 332 2.0E-37 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PRINTS PR00415 Aconitase family signature 128 136 2.0E-37 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PRINTS PR00415 Aconitase family signature 411 424 2.0E-37 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PRINTS PR00415 Aconitase family signature 148 161 2.0E-37 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PRINTS PR00415 Aconitase family signature 224 237 2.0E-37 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PRINTS PR00415 Aconitase family signature 238 251 2.0E-37 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 Pfam PF00330 Aconitase family (aconitate hydratase) 33 474 8.8E-151 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 Gene3D G3DSA:3.30.499.10 314 485 1.1E-54 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 SUPERFAMILY SSF53732 7 518 2.75E-156 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 PANTHER PTHR11670 10 745 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 Gene3D G3DSA:3.20.19.10 532 746 5.0E-73 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 Gene3D G3DSA:3.30.499.10 7 193 7.0E-66 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS03845 831015074f89d8116da681874d9af1c5 748 Pfam PF00694 Aconitase C-terminal domain 555 683 3.5E-35 T 23-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 NIDE_RS15725 63b0857af56e77dbb0a6024c1dcb65bd 665 Pfam PF04932 O-Antigen ligase 199 334 1.8E-16 T 23-04-2016 IPR007016 O-antigen ligase-related NIDE_RS15725 63b0857af56e77dbb0a6024c1dcb65bd 665 SUPERFAMILY SSF48452 444 633 1.06E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15725 63b0857af56e77dbb0a6024c1dcb65bd 665 PANTHER PTHR23083 318 342 5.6E-16 T 23-04-2016 NIDE_RS15725 63b0857af56e77dbb0a6024c1dcb65bd 665 PANTHER PTHR23083 456 533 5.6E-16 T 23-04-2016 NIDE_RS15725 63b0857af56e77dbb0a6024c1dcb65bd 665 PANTHER PTHR23083 549 637 5.6E-16 T 23-04-2016 NIDE_RS15725 63b0857af56e77dbb0a6024c1dcb65bd 665 Gene3D G3DSA:1.25.40.10 455 631 2.1E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS07125 b5ae6cc97d63ea30b6ebc671959a2855 181 TIGRFAM TIGR02548 casB_cse2: CRISPR type I-E/ECOLI-associated protein CasB/Cse2 24 177 1.9E-20 T 23-04-2016 IPR013382 CRISPR-associated protein Cse2 NIDE_RS07125 b5ae6cc97d63ea30b6ebc671959a2855 181 Pfam PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) 37 176 1.9E-18 T 23-04-2016 IPR013382 CRISPR-associated protein Cse2 NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 Pfam PF02464 Competence-damaged protein 266 420 6.1E-55 T 23-04-2016 IPR008136 CinA, C-terminal NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 426 141.274 T 23-04-2016 IPR008135 Competence-induced protein CinA NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 PIRSF PIRSF006728 6 426 5.4E-127 T 23-04-2016 IPR008135 Competence-induced protein CinA NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 Gene3D G3DSA:3.40.980.10 6 207 7.9E-28 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 PANTHER PTHR13939 7 424 1.0E-144 T 23-04-2016 NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 Gene3D G3DSA:3.90.950.20 258 421 1.5E-56 T 23-04-2016 IPR008136 CinA, C-terminal NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 Pfam PF00994 Probable molybdopterin binding domain 11 175 8.7E-30 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 SUPERFAMILY SSF53218 6 183 1.14E-33 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 SMART SM00852 10 176 4.6E-33 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 8 421 6.6E-97 T 23-04-2016 IPR008135 Competence-induced protein CinA NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 PANTHER PTHR13939:SF0 7 424 1.0E-144 T 23-04-2016 NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 273 420 9.8E-43 T 23-04-2016 IPR008136 CinA, C-terminal NIDE_RS14110 83f748a3d739636f3191c1b420fb1e63 426 SUPERFAMILY SSF142433 260 422 2.88E-53 T 23-04-2016 IPR008136 CinA, C-terminal NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 Pfam PF05954 Phage late control gene D protein (GPD) 29 329 9.5E-99 T 23-04-2016 NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 SUPERFAMILY SSF69279 12 185 3.1E-62 T 23-04-2016 NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 555 577 7.7E-6 T 23-04-2016 IPR010609 Gp5, C-terminal NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 522 545 2.2E-5 T 23-04-2016 IPR010609 Gp5, C-terminal NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 SUPERFAMILY SSF69349 445 618 1.26E-47 T 23-04-2016 NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 Gene3D G3DSA:2.40.50.230 373 455 2.5E-41 T 23-04-2016 IPR006531 Gp5 N-terminal NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 Gene3D G3DSA:3.55.50.10 98 190 1.7E-36 T 23-04-2016 NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 PANTHER PTHR32305:SF7 1 691 1.4E-186 T 23-04-2016 NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 24 507 1.4E-146 T 23-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 SUPERFAMILY SSF69279 190 367 8.67E-39 T 23-04-2016 NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 PANTHER PTHR32305 1 691 1.4E-186 T 23-04-2016 NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 12 524 9.2E-207 T 23-04-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 SUPERFAMILY SSF69255 367 455 1.94E-35 T 23-04-2016 NIDE_RS09090 801fd6f7d25acde01378579cd3ae15f2 750 SUPERFAMILY SSF69349 598 740 4.71E-18 T 23-04-2016 NIDE_RS10995 44cf705a4c10cfdc7f0261dcc19b47d2 150 PIRSF PIRSF000441 1 150 5.4E-42 T 23-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 NIDE_RS10995 44cf705a4c10cfdc7f0261dcc19b47d2 150 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 51 78 4.4E-4 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS10995 44cf705a4c10cfdc7f0261dcc19b47d2 150 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 86 118 5.6E-7 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS10995 44cf705a4c10cfdc7f0261dcc19b47d2 150 SUPERFAMILY SSF51161 21 137 4.85E-32 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS10995 44cf705a4c10cfdc7f0261dcc19b47d2 150 Gene3D G3DSA:2.160.10.10 40 141 6.7E-27 T 23-04-2016 NIDE_RS10995 44cf705a4c10cfdc7f0261dcc19b47d2 150 PANTHER PTHR23416 8 139 2.2E-33 T 23-04-2016 NIDE_RS10995 44cf705a4c10cfdc7f0261dcc19b47d2 150 PANTHER PTHR23416:SF55 8 139 2.2E-33 T 23-04-2016 NIDE_RS11095 011c658a34a4d54671ec9ab659f96035 338 PANTHER PTHR30570:SF5 55 338 5.1E-126 T 23-04-2016 NIDE_RS11095 011c658a34a4d54671ec9ab659f96035 338 Gene3D G3DSA:3.40.190.10 54 153 9.7E-16 T 23-04-2016 NIDE_RS11095 011c658a34a4d54671ec9ab659f96035 338 Pfam PF12849 PBP superfamily domain 54 312 6.1E-34 T 23-04-2016 IPR024370 PBP domain NIDE_RS11095 011c658a34a4d54671ec9ab659f96035 338 SUPERFAMILY SSF53850 53 336 4.61E-65 T 23-04-2016 NIDE_RS11095 011c658a34a4d54671ec9ab659f96035 338 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 30 324 2.1E-73 T 23-04-2016 IPR011862 Phosphate binding protein GO:0006810 NIDE_RS11095 011c658a34a4d54671ec9ab659f96035 338 Gene3D G3DSA:3.40.190.10 154 283 1.8E-34 T 23-04-2016 NIDE_RS11095 011c658a34a4d54671ec9ab659f96035 338 PANTHER PTHR30570 55 338 5.1E-126 T 23-04-2016 NIDE_RS20700 141eb135494aa5a10767898dcf914947 690 SUPERFAMILY SSF47226 360 475 4.45E-10 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS20700 141eb135494aa5a10767898dcf914947 690 Pfam PF01966 HD domain 65 183 2.2E-10 T 23-04-2016 IPR006674 HD domain NIDE_RS20700 141eb135494aa5a10767898dcf914947 690 Gene3D G3DSA:1.10.3210.10 66 205 1.2E-10 T 23-04-2016 IPR006674 HD domain NIDE_RS20700 141eb135494aa5a10767898dcf914947 690 SMART SM00471 57 193 2.2E-4 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS20700 141eb135494aa5a10767898dcf914947 690 SUPERFAMILY SSF109604 66 220 5.23E-21 T 23-04-2016 NIDE_RS20700 141eb135494aa5a10767898dcf914947 690 Gene3D G3DSA:1.20.120.160 360 484 3.0E-10 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS11920 ceac0efa478842b14bf213ca52f86ed5 300 PANTHER PTHR10992 37 297 2.0E-50 T 23-04-2016 NIDE_RS11920 ceac0efa478842b14bf213ca52f86ed5 300 Pfam PF00561 alpha/beta hydrolase fold 66 173 2.9E-21 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS11920 ceac0efa478842b14bf213ca52f86ed5 300 PRINTS PR00111 Alpha/beta hydrolase fold signature 148 161 1.3E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS11920 ceac0efa478842b14bf213ca52f86ed5 300 PRINTS PR00111 Alpha/beta hydrolase fold signature 134 147 1.3E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS11920 ceac0efa478842b14bf213ca52f86ed5 300 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 105 1.3E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS11920 ceac0efa478842b14bf213ca52f86ed5 300 PRINTS PR00111 Alpha/beta hydrolase fold signature 242 256 1.3E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS11920 ceac0efa478842b14bf213ca52f86ed5 300 SUPERFAMILY SSF53474 39 297 4.74E-60 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS11920 ceac0efa478842b14bf213ca52f86ed5 300 Gene3D G3DSA:3.40.50.1820 46 297 8.0E-61 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS17335 11ff9d495c82c833f7ff8f7da98d1c8f 195 Gene3D G3DSA:3.40.50.360 5 191 4.5E-42 T 23-04-2016 IPR029039 Flavoprotein-like domain NIDE_RS17335 11ff9d495c82c833f7ff8f7da98d1c8f 195 Pfam PF02525 Flavodoxin-like fold 5 184 4.6E-40 T 23-04-2016 IPR003680 Flavodoxin-like fold NIDE_RS17335 11ff9d495c82c833f7ff8f7da98d1c8f 195 PANTHER PTHR10204:SF40 2 190 1.1E-37 T 23-04-2016 NIDE_RS17335 11ff9d495c82c833f7ff8f7da98d1c8f 195 SUPERFAMILY SSF52218 5 191 5.83E-51 T 23-04-2016 IPR029039 Flavoprotein-like domain NIDE_RS17335 11ff9d495c82c833f7ff8f7da98d1c8f 195 PANTHER PTHR10204 2 190 1.1E-37 T 23-04-2016 NIDE_RS02690 d7d3d6cac55934dbaccb20bcf71d7de6 174 Pfam PF03350 Uncharacterized protein family, UPF0114 18 133 4.4E-36 T 23-04-2016 IPR005134 Uncharacterised protein family UPF0114 NIDE_RS02690 d7d3d6cac55934dbaccb20bcf71d7de6 174 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 11 172 7.1E-56 T 23-04-2016 IPR020761 Uncharacterised protein family UPF0114, bacteria NIDE_RS02690 d7d3d6cac55934dbaccb20bcf71d7de6 174 PANTHER PTHR38596:SF1 7 167 2.5E-64 T 23-04-2016 NIDE_RS02690 d7d3d6cac55934dbaccb20bcf71d7de6 174 PANTHER PTHR38596 7 167 2.5E-64 T 23-04-2016 NIDE_RS02690 d7d3d6cac55934dbaccb20bcf71d7de6 174 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 174 76.158 T 23-04-2016 IPR020765 Uncharacterised protein family UPF0114, gammaproteobacteria GO:0005886 NIDE_RS01610 03992dd409abf9942ae126970c6d1484 890 PANTHER PTHR30287 1 449 1.2E-106 T 23-04-2016 NIDE_RS01610 03992dd409abf9942ae126970c6d1484 890 PANTHER PTHR30287 467 890 1.2E-106 T 23-04-2016 NIDE_RS01610 03992dd409abf9942ae126970c6d1484 890 Pfam PF12704 MacB-like periplasmic core domain 26 204 3.7E-7 T 23-04-2016 IPR025857 MacB-like periplasmic core domain NIDE_RS01610 03992dd409abf9942ae126970c6d1484 890 Pfam PF02687 FtsX-like permease family 770 882 1.0E-15 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS01610 03992dd409abf9942ae126970c6d1484 890 Pfam PF02687 FtsX-like permease family 276 403 2.7E-11 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS02945 559837c0b894c2f728b6a47e2f72ffec 774 PANTHER PTHR32552 36 773 1.3E-31 T 23-04-2016 NIDE_RS02945 559837c0b894c2f728b6a47e2f72ffec 774 SUPERFAMILY SSF56935 91 771 3.02E-89 T 23-04-2016 NIDE_RS02945 559837c0b894c2f728b6a47e2f72ffec 774 Pfam PF07715 TonB-dependent Receptor Plug Domain 120 220 5.9E-12 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02945 559837c0b894c2f728b6a47e2f72ffec 774 Gene3D G3DSA:2.170.130.10 119 224 1.2E-17 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02945 559837c0b894c2f728b6a47e2f72ffec 774 Gene3D G3DSA:2.40.170.20 225 770 3.0E-72 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS02945 559837c0b894c2f728b6a47e2f72ffec 774 Pfam PF00593 TonB dependent receptor 504 771 3.1E-25 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 Gene3D G3DSA:2.120.10.30 354 401 2.4E-5 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 Gene3D G3DSA:2.120.10.30 32 70 2.6E-61 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 Gene3D G3DSA:2.120.10.30 130 348 2.6E-61 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 Pfam PF01436 NHL repeat 316 342 2.1E-4 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 Pfam PF01436 NHL repeat 146 172 7.7E-6 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 Pfam PF01436 NHL repeat 34 56 3.8E-6 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 Pfam PF01436 NHL repeat 373 399 4.0E-6 T 23-04-2016 IPR001258 NHL repeat GO:0005515 NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 PANTHER PTHR24103:SF378 35 65 3.6E-28 T 23-04-2016 NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 PANTHER PTHR24103:SF378 132 401 3.6E-28 T 23-04-2016 NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 PANTHER PTHR24103 35 65 3.6E-28 T 23-04-2016 NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 PANTHER PTHR24103 132 401 3.6E-28 T 23-04-2016 NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 SUPERFAMILY SSF101898 146 402 7.85E-44 T 23-04-2016 NIDE_RS04630 de0e2f538b1cf77e00fddcd13ccccfc8 404 SUPERFAMILY SSF101898 34 76 7.85E-44 T 23-04-2016 NIDE_RS15960 09eb0bc45ccc1a7cb554b28a1848b317 107 Pfam PF01883 Domain of unknown function DUF59 13 83 8.5E-21 T 23-04-2016 IPR002744 Domain of unknown function DUF59 NIDE_RS15960 09eb0bc45ccc1a7cb554b28a1848b317 107 SUPERFAMILY SSF117916 12 105 1.37E-29 T 23-04-2016 NIDE_RS15960 09eb0bc45ccc1a7cb554b28a1848b317 107 PANTHER PTHR13696 13 104 2.1E-21 T 23-04-2016 NIDE_RS15960 09eb0bc45ccc1a7cb554b28a1848b317 107 PANTHER PTHR13696:SF62 13 104 2.1E-21 T 23-04-2016 NIDE_RS07940 a6efe7214fef6370207a82efd9f8af1f 256 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 249 4.2E-71 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 NIDE_RS07940 a6efe7214fef6370207a82efd9f8af1f 256 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 254 35.289 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 NIDE_RS07940 a6efe7214fef6370207a82efd9f8af1f 256 Gene3D G3DSA:3.30.420.40 95 254 4.2E-49 T 23-04-2016 NIDE_RS07940 a6efe7214fef6370207a82efd9f8af1f 256 PANTHER PTHR34265 1 254 2.3E-73 T 23-04-2016 NIDE_RS07940 a6efe7214fef6370207a82efd9f8af1f 256 SUPERFAMILY SSF53067 1 121 1.01E-33 T 23-04-2016 NIDE_RS07940 a6efe7214fef6370207a82efd9f8af1f 256 Pfam PF03309 Type III pantothenate kinase 2 206 6.2E-69 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 NIDE_RS07940 a6efe7214fef6370207a82efd9f8af1f 256 SUPERFAMILY SSF53067 124 253 2.59E-37 T 23-04-2016 NIDE_RS20110 f7cc2fb7b49e8201a6df43d987310756 148 PANTHER PTHR12231 58 145 4.1E-14 T 23-04-2016 NIDE_RS20110 f7cc2fb7b49e8201a6df43d987310756 148 SUPERFAMILY SSF52821 29 146 2.1E-28 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS20110 f7cc2fb7b49e8201a6df43d987310756 148 Gene3D G3DSA:3.40.250.10 38 146 8.3E-27 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS20110 f7cc2fb7b49e8201a6df43d987310756 148 Pfam PF00581 Rhodanese-like domain 55 140 1.5E-14 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS20110 f7cc2fb7b49e8201a6df43d987310756 148 SMART SM00450 45 143 1.8E-21 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS01455 5f82b16c4829f4f0580106fc2e2137d8 181 Gene3D G3DSA:3.40.470.10 7 173 2.2E-43 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS01455 5f82b16c4829f4f0580106fc2e2137d8 181 SUPERFAMILY SSF52141 7 170 9.16E-32 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS01455 5f82b16c4829f4f0580106fc2e2137d8 181 Pfam PF03167 Uracil DNA glycosylase superfamily 9 160 1.5E-18 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS01455 5f82b16c4829f4f0580106fc2e2137d8 181 PANTHER PTHR12159 5 169 1.8E-46 T 23-04-2016 IPR015637 G/U mismatch-specific DNA glycosylase GO:0006281|GO:0019104 NIDE_RS01455 5f82b16c4829f4f0580106fc2e2137d8 181 SMART SM00987 8 167 0.008 T 23-04-2016 NIDE_RS01455 5f82b16c4829f4f0580106fc2e2137d8 181 SMART SM00986 8 167 0.008 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 SUPERFAMILY SSF52964 36 174 9.81E-17 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 SUPERFAMILY SSF69304 168 441 6.15E-58 T 23-04-2016 NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 27 440 6.4E-111 T 23-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 Pfam PF04052 TolB amino-terminal domain 34 122 1.1E-5 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 PANTHER PTHR11731:SF123 174 441 1.1E-33 T 23-04-2016 NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 Hamap MF_00671 Protein TolB [tolB]. 5 439 28.124 T 23-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 Gene3D G3DSA:2.130.10.10 164 441 6.5E-78 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 Gene3D G3DSA:3.40.50.10070 34 163 2.3E-15 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 PANTHER PTHR11731 174 441 1.1E-33 T 23-04-2016 NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 Pfam PF07676 WD40-like Beta Propeller Repeat 254 282 4.5E-7 T 23-04-2016 IPR011659 WD40-like Beta Propeller NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 Pfam PF07676 WD40-like Beta Propeller Repeat 295 327 1.8E-7 T 23-04-2016 IPR011659 WD40-like Beta Propeller NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 Pfam PF07676 WD40-like Beta Propeller Repeat 203 235 4.4E-5 T 23-04-2016 IPR011659 WD40-like Beta Propeller NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 Pfam PF07676 WD40-like Beta Propeller Repeat 381 416 5.6E-12 T 23-04-2016 IPR011659 WD40-like Beta Propeller NIDE_RS15365 3c80912213f43043b7033d6904f9d20a 443 Pfam PF07676 WD40-like Beta Propeller Repeat 336 360 0.0013 T 23-04-2016 IPR011659 WD40-like Beta Propeller NIDE_RS16315 4fa54290a44e5604522417c49c00c6d4 148 Pfam PF02943 Ferredoxin thioredoxin reductase catalytic beta chain 9 92 2.8E-21 T 23-04-2016 IPR004209 Ferredoxin thioredoxin reductase catalytic beta subunit GO:0016730|GO:0055114 NIDE_RS16315 4fa54290a44e5604522417c49c00c6d4 148 PANTHER PTHR35113 1 92 1.0E-22 T 23-04-2016 NIDE_RS16315 4fa54290a44e5604522417c49c00c6d4 148 Gene3D G3DSA:3.90.460.10 2 109 4.2E-33 T 23-04-2016 IPR004209 Ferredoxin thioredoxin reductase catalytic beta subunit GO:0016730|GO:0055114 NIDE_RS16315 4fa54290a44e5604522417c49c00c6d4 148 PANTHER PTHR35113:SF1 1 92 1.0E-22 T 23-04-2016 NIDE_RS16315 4fa54290a44e5604522417c49c00c6d4 148 SUPERFAMILY SSF57662 6 94 3.79E-24 T 23-04-2016 IPR004209 Ferredoxin thioredoxin reductase catalytic beta subunit GO:0016730|GO:0055114 NIDE_RS00905 84d82e5b4c857e555ad5c9860c388202 160 SMART SM00228 55 132 4.9E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS00905 84d82e5b4c857e555ad5c9860c388202 160 Gene3D G3DSA:2.30.42.10 49 142 5.7E-20 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS00905 84d82e5b4c857e555ad5c9860c388202 160 Pfam PF13180 PDZ domain 56 140 7.1E-13 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS00905 84d82e5b4c857e555ad5c9860c388202 160 PANTHER PTHR32060 74 141 4.0E-14 T 23-04-2016 NIDE_RS00905 84d82e5b4c857e555ad5c9860c388202 160 SUPERFAMILY SSF50156 45 143 3.94E-19 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 SMART SM00448 4 117 2.7E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 Gene3D G3DSA:1.10.10.10 122 211 9.4E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 3.6E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 3.6E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 3.6E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 PANTHER PTHR26402 4 207 1.7E-53 T 23-04-2016 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 SUPERFAMILY SSF46894 144 211 3.27E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 Gene3D G3DSA:3.40.50.2300 2 121 4.0E-34 T 23-04-2016 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 SMART SM00421 148 205 1.2E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 Pfam PF00072 Response regulator receiver domain 7 117 2.3E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 5.2E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 SUPERFAMILY SSF52172 3 133 1.71E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS02670 1bfddadd6bd005a556436d95d0987543 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 PANTHER PTHR11918:SF43 9 444 3.0E-177 T 23-04-2016 NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 Pfam PF00919 Uncharacterized protein family UPF0004 10 107 4.1E-31 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 8 447 63.164 T 23-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 SMART SM00729 155 371 1.1E-47 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 9 441 1.2E-131 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 Gene3D G3DSA:3.80.30.20 157 382 3.9E-73 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 PANTHER PTHR11918 9 444 3.0E-177 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 SUPERFAMILY SSF102114 151 376 1.27E-52 T 23-04-2016 NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 159 179 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 Pfam PF04055 Radical SAM superfamily 161 326 1.6E-25 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 Pfam PF01938 TRAM domain 384 443 2.1E-6 T 23-04-2016 IPR002792 TRAM domain NIDE_RS08790 d857324641f8be9cf9badb9bc0ef0c0d 452 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 10 443 1.5E-131 T 23-04-2016 NIDE_RS20495 feff6b0070ba346a70ab0a013b121b95 205 Pfam PF01184 GPR1/FUN34/yaaH family 11 176 2.5E-12 T 23-04-2016 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 NIDE_RS19400 13388742ed363a7dc224db2d294d388a 454 Pfam PF07687 Peptidase dimerisation domain 193 353 3.5E-17 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain NIDE_RS19400 13388742ed363a7dc224db2d294d388a 454 Pfam PF01546 Peptidase family M20/M25/M40 86 448 1.5E-28 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 NIDE_RS19400 13388742ed363a7dc224db2d294d388a 454 PANTHER PTHR11014:SF72 1 454 7.7E-104 T 23-04-2016 NIDE_RS19400 13388742ed363a7dc224db2d294d388a 454 Gene3D G3DSA:3.30.70.360 196 357 2.5E-44 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain NIDE_RS19400 13388742ed363a7dc224db2d294d388a 454 SUPERFAMILY SSF53187 365 451 8.0E-51 T 23-04-2016 NIDE_RS19400 13388742ed363a7dc224db2d294d388a 454 SUPERFAMILY SSF53187 7 196 8.0E-51 T 23-04-2016 NIDE_RS19400 13388742ed363a7dc224db2d294d388a 454 PANTHER PTHR11014 1 454 7.7E-104 T 23-04-2016 NIDE_RS19400 13388742ed363a7dc224db2d294d388a 454 Gene3D G3DSA:3.40.630.10 364 451 1.8E-50 T 23-04-2016 NIDE_RS19400 13388742ed363a7dc224db2d294d388a 454 Gene3D G3DSA:3.40.630.10 8 190 1.8E-50 T 23-04-2016 NIDE_RS03910 04ec6f93ae7ef2e391dcf561e1b3fee4 248 PANTHER PTHR31272 6 239 8.1E-79 T 23-04-2016 NIDE_RS03910 04ec6f93ae7ef2e391dcf561e1b3fee4 248 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 13 225 3.5E-60 T 23-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 NIDE_RS03910 04ec6f93ae7ef2e391dcf561e1b3fee4 248 PANTHER PTHR31272:SF4 6 239 8.1E-79 T 23-04-2016 NIDE_RS03415 b5d515464fd37d1c3659cd2c4965ae56 335 Gene3D G3DSA:3.40.50.1820 35 325 1.8E-36 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS03415 b5d515464fd37d1c3659cd2c4965ae56 335 Pfam PF00561 alpha/beta hydrolase fold 57 163 3.3E-14 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS03415 b5d515464fd37d1c3659cd2c4965ae56 335 SUPERFAMILY SSF53474 33 323 6.67E-37 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS03415 b5d515464fd37d1c3659cd2c4965ae56 335 PANTHER PTHR10992 40 327 4.3E-21 T 23-04-2016 NIDE_RS20210 3134183a3fdc7374c63a5905091ccd60 380 Gene3D G3DSA:3.30.1150.10 265 364 7.7E-18 T 23-04-2016 NIDE_RS20210 3134183a3fdc7374c63a5905091ccd60 380 PANTHER PTHR33446:SF2 132 158 2.0E-15 T 23-04-2016 NIDE_RS20210 3134183a3fdc7374c63a5905091ccd60 380 PANTHER PTHR33446:SF2 174 380 2.0E-15 T 23-04-2016 NIDE_RS20210 3134183a3fdc7374c63a5905091ccd60 380 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 302 378 1.6E-17 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS20210 3134183a3fdc7374c63a5905091ccd60 380 PANTHER PTHR33446 132 158 2.0E-15 T 23-04-2016 NIDE_RS20210 3134183a3fdc7374c63a5905091ccd60 380 PANTHER PTHR33446 174 380 2.0E-15 T 23-04-2016 NIDE_RS20210 3134183a3fdc7374c63a5905091ccd60 380 SUPERFAMILY SSF74653 303 359 2.62E-15 T 23-04-2016 NIDE_RS20210 3134183a3fdc7374c63a5905091ccd60 380 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 303 367 1.8E-18 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS04760 b0e479fc7278c73c4e12cd3b160d0020 124 PANTHER PTHR30558 2 121 1.7E-17 T 23-04-2016 NIDE_RS04760 b0e479fc7278c73c4e12cd3b160d0020 124 PANTHER PTHR30558:SF3 2 121 1.7E-17 T 23-04-2016 NIDE_RS04760 b0e479fc7278c73c4e12cd3b160d0020 124 Pfam PF02472 Biopolymer transport protein ExbD/TolR 3 120 1.9E-17 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 NIDE_RS19260 c965b543d39cf86f43a992fd63f08282 231 PANTHER PTHR30461:SF3 1 222 1.1E-39 T 23-04-2016 NIDE_RS19260 c965b543d39cf86f43a992fd63f08282 231 Pfam PF07508 Recombinase 181 223 2.3E-5 T 23-04-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 NIDE_RS19260 c965b543d39cf86f43a992fd63f08282 231 SUPERFAMILY SSF53041 1 151 1.96E-34 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS19260 c965b543d39cf86f43a992fd63f08282 231 SMART SM00857 3 151 2.3E-47 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS19260 c965b543d39cf86f43a992fd63f08282 231 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 23-04-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 NIDE_RS19260 c965b543d39cf86f43a992fd63f08282 231 Pfam PF00239 Resolvase, N terminal domain 3 150 9.2E-37 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS19260 c965b543d39cf86f43a992fd63f08282 231 Gene3D G3DSA:3.40.50.1390 1 132 1.3E-30 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS19260 c965b543d39cf86f43a992fd63f08282 231 PANTHER PTHR30461 1 222 1.1E-39 T 23-04-2016 NIDE_RS11740 a8f7bca66bcd00755dd75012a6dbbfba 204 PIRSF PIRSF000847 19 203 1.0E-49 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 NIDE_RS11740 a8f7bca66bcd00755dd75012a6dbbfba 204 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 23 199 5.7E-44 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 NIDE_RS11740 a8f7bca66bcd00755dd75012a6dbbfba 204 Pfam PF01066 CDP-alcohol phosphatidyltransferase 23 90 4.0E-18 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NIDE_RS11740 a8f7bca66bcd00755dd75012a6dbbfba 204 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 90 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NIDE_RS11740 a8f7bca66bcd00755dd75012a6dbbfba 204 PANTHER PTHR14269 23 197 7.4E-40 T 23-04-2016 NIDE_RS08420 e9fa23029a0af2488d0fb3e139cd3759 140 PANTHER PTHR11911 12 138 6.9E-27 T 23-04-2016 NIDE_RS08420 e9fa23029a0af2488d0fb3e139cd3759 140 Gene3D G3DSA:3.10.580.10 9 120 2.2E-31 T 23-04-2016 NIDE_RS08420 e9fa23029a0af2488d0fb3e139cd3759 140 Pfam PF00571 CBS domain 70 124 3.8E-13 T 23-04-2016 IPR000644 CBS domain NIDE_RS08420 e9fa23029a0af2488d0fb3e139cd3759 140 Pfam PF00571 CBS domain 11 58 7.0E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS08420 e9fa23029a0af2488d0fb3e139cd3759 140 SUPERFAMILY SSF54631 7 126 3.28E-29 T 23-04-2016 NIDE_RS08420 e9fa23029a0af2488d0fb3e139cd3759 140 SMART SM00116 77 124 1.1E-8 T 23-04-2016 IPR000644 CBS domain NIDE_RS08420 e9fa23029a0af2488d0fb3e139cd3759 140 SMART SM00116 12 59 0.055 T 23-04-2016 IPR000644 CBS domain NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 PRINTS PR01438 Universal stress protein signature 271 293 2.87E-15 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 PRINTS PR01438 Universal stress protein signature 253 265 2.87E-15 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 PRINTS PR01438 Universal stress protein signature 148 166 2.87E-15 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 SUPERFAMILY SSF52402 1 142 9.21E-23 T 23-04-2016 NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 Gene3D G3DSA:3.40.50.620 150 294 9.8E-26 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 Gene3D G3DSA:3.40.50.620 3 142 2.1E-24 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 PANTHER PTHR31964:SF26 1 85 5.1E-19 T 23-04-2016 NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 PANTHER PTHR31964:SF26 237 294 5.1E-19 T 23-04-2016 NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 SUPERFAMILY SSF52402 150 293 2.09E-23 T 23-04-2016 NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 Pfam PF00582 Universal stress protein family 150 293 7.4E-20 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 Pfam PF00582 Universal stress protein family 3 140 4.0E-22 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 PANTHER PTHR31964 1 85 5.1E-19 T 23-04-2016 NIDE_RS17505 dfbc9aaea020c824432e0b3a93dde044 294 PANTHER PTHR31964 237 294 5.1E-19 T 23-04-2016 NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 PANTHER PTHR30346:SF15 1 289 1.1E-93 T 23-04-2016 NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 SUPERFAMILY SSF46785 1 84 4.72E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.4E-18 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 Pfam PF03466 LysR substrate binding domain 88 282 5.8E-45 T 23-04-2016 IPR005119 LysR, substrate-binding NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 Gene3D G3DSA:3.40.190.10 90 174 5.9E-18 T 23-04-2016 NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 Gene3D G3DSA:3.40.190.10 175 267 2.5E-29 T 23-04-2016 NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 PANTHER PTHR30346 1 289 1.1E-93 T 23-04-2016 NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.0E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.0E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.0E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 SUPERFAMILY SSF53850 88 290 4.05E-40 T 23-04-2016 NIDE_RS00265 e4b175d45dcbea84e5628de49627927f 304 Gene3D G3DSA:1.10.10.10 1 79 3.5E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS17280 824528754773c33b90260449456b3b10 301 Gene3D G3DSA:3.40.50.620 156 297 2.4E-30 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17280 824528754773c33b90260449456b3b10 301 Gene3D G3DSA:3.40.50.620 2 151 7.3E-29 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17280 824528754773c33b90260449456b3b10 301 SUPERFAMILY SSF52402 1 151 2.43E-27 T 23-04-2016 NIDE_RS17280 824528754773c33b90260449456b3b10 301 PRINTS PR01438 Universal stress protein signature 257 269 8.2E-13 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17280 824528754773c33b90260449456b3b10 301 PRINTS PR01438 Universal stress protein signature 155 173 8.2E-13 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17280 824528754773c33b90260449456b3b10 301 PRINTS PR01438 Universal stress protein signature 275 297 8.2E-13 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17280 824528754773c33b90260449456b3b10 301 SUPERFAMILY SSF52402 157 297 5.19E-28 T 23-04-2016 NIDE_RS17280 824528754773c33b90260449456b3b10 301 PANTHER PTHR31964 1 167 5.6E-26 T 23-04-2016 NIDE_RS17280 824528754773c33b90260449456b3b10 301 Pfam PF00582 Universal stress protein family 157 297 3.9E-23 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS17280 824528754773c33b90260449456b3b10 301 Pfam PF00582 Universal stress protein family 2 149 1.3E-23 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 192 208 9.2E-80 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 36 51 9.2E-80 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 9.2E-80 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 9.2E-80 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 125 137 9.2E-80 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 57 67 9.2E-80 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 230 251 9.2E-80 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 140 164 9.2E-80 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 264 282 9.2E-80 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 Gene3D G3DSA:3.50.50.60 229 296 2.1E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 Gene3D G3DSA:3.50.50.60 116 228 1.6E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 SUPERFAMILY SSF51905 1 301 1.84E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 290 9.3E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 132 152 - T 23-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 2 301 3.8E-126 T 23-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PANTHER PTHR22912 1 304 2.6E-161 T 23-04-2016 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 Gene3D G3DSA:3.50.50.60 2 113 1.3E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PANTHER PTHR22912:SF48 1 304 2.6E-161 T 23-04-2016 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 276 1.7E-40 T 23-04-2016 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.7E-40 T 23-04-2016 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.7E-40 T 23-04-2016 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 1.7E-40 T 23-04-2016 NIDE_RS05205 932af3d54bf339d2be1acb2374c35354 304 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 1.7E-40 T 23-04-2016 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 Pfam PF13424 Tetratricopeptide repeat 74 147 1.2E-9 T 23-04-2016 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 SUPERFAMILY SSF48452 35 232 4.34E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 SUPERFAMILY SSF48452 313 411 2.2E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 Gene3D G3DSA:1.25.40.10 41 219 6.3E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 Gene3D G3DSA:1.25.40.10 313 407 5.2E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 SMART SM00028 75 108 2.1 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 SMART SM00028 35 68 150.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 SMART SM00028 155 188 48.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 SMART SM00028 336 369 6.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 SMART SM00028 115 148 0.024 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20545 ed93c3a2fcfa5484c3e17e0007f8033e 821 Pfam PF12770 CHAT domain 551 817 4.5E-55 T 23-04-2016 IPR024983 CHAT domain NIDE_RS05090 5cd36b096c4a6355811cff925bc20b4f 304 PANTHER PTHR11825:SF7 1 303 5.7E-115 T 23-04-2016 NIDE_RS05090 5cd36b096c4a6355811cff925bc20b4f 304 Gene3D G3DSA:3.20.10.10 133 292 1.6E-57 T 23-04-2016 NIDE_RS05090 5cd36b096c4a6355811cff925bc20b4f 304 Gene3D G3DSA:3.30.470.10 6 128 2.7E-38 T 23-04-2016 NIDE_RS05090 5cd36b096c4a6355811cff925bc20b4f 304 Pfam PF01063 Amino-transferase class IV 35 265 3.5E-50 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS05090 5cd36b096c4a6355811cff925bc20b4f 304 SUPERFAMILY SSF56752 3 301 5.36E-97 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS05090 5cd36b096c4a6355811cff925bc20b4f 304 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 9 304 5.8E-130 T 23-04-2016 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|UniPathway: UPA00047|UniPathway: UPA00048|UniPathway: UPA00049 NIDE_RS05090 5cd36b096c4a6355811cff925bc20b4f 304 ProSitePatterns PS00770 Aminotransferases class-IV signature. 192 220 - T 23-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS05090 5cd36b096c4a6355811cff925bc20b4f 304 PANTHER PTHR11825 1 303 5.7E-115 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 Gene3D G3DSA:3.50.50.60 5 142 1.5E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 Gene3D G3DSA:3.30.390.30 344 458 3.4E-30 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 SUPERFAMILY SSF55424 345 462 2.75E-31 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PANTHER PTHR22912:SF93 6 458 4.9E-147 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 454 8.0E-25 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PIRSF PIRSF000350 2 463 7.4E-74 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 SUPERFAMILY SSF51905 2 336 2.95E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.8E-36 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 5.8E-36 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 5.8E-36 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 5.8E-36 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 5.8E-36 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 327 2.4E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 1.9E-56 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 1.9E-56 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 1.9E-56 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 1.9E-56 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 1.9E-56 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 1.9E-56 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 1.9E-56 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.9E-56 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 429 449 1.9E-56 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 PANTHER PTHR22912 6 458 4.9E-147 T 23-04-2016 NIDE_RS11575 d70c8a1cba13b8b60d88a12fb4ce658b 472 Gene3D G3DSA:3.50.50.60 143 336 9.0E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS17110 073eea946146e58530c5952773f8c906 291 PANTHER PTHR31956 32 267 1.2E-51 T 23-04-2016 NIDE_RS17110 073eea946146e58530c5952773f8c906 291 PANTHER PTHR31956:SF13 32 267 1.2E-51 T 23-04-2016 NIDE_RS17110 073eea946146e58530c5952773f8c906 291 Pfam PF04185 Phosphoesterase family 52 267 1.7E-28 T 23-04-2016 IPR007312 Phosphoesterase GO:0016788 NIDE_RS17110 073eea946146e58530c5952773f8c906 291 SUPERFAMILY SSF53649 30 270 3.74E-6 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 PIRSF PIRSF000410 1 286 4.1E-81 T 23-04-2016 IPR026024 Chemotaxis protein methyltransferase CheR NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 PANTHER PTHR24422 17 277 4.4E-71 T 23-04-2016 NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 Pfam PF01739 CheR methyltransferase, SAM binding domain 88 278 7.7E-58 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 SUPERFAMILY SSF53335 88 276 4.85E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 SMART SM00138 19 284 1.1E-78 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 Pfam PF03705 CheR methyltransferase, all-alpha domain 21 70 2.2E-15 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 Gene3D G3DSA:1.10.155.10 14 86 8.0E-19 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 PRINTS PR00996 Glutamate methyltransferase family signature 224 238 9.0E-38 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 PRINTS PR00996 Glutamate methyltransferase family signature 81 93 9.0E-38 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 PRINTS PR00996 Glutamate methyltransferase family signature 121 141 9.0E-38 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 PRINTS PR00996 Glutamate methyltransferase family signature 155 171 9.0E-38 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 PRINTS PR00996 Glutamate methyltransferase family signature 243 266 9.0E-38 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 PRINTS PR00996 Glutamate methyltransferase family signature 41 54 9.0E-38 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 Gene3D G3DSA:3.40.50.150 87 279 4.5E-61 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS10765 1e93f98fb526afe9160d9a2335c345d5 287 SUPERFAMILY SSF47757 13 87 9.42E-17 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal NIDE_RS00275 c207e3423e84951a2babe51d2017fbfd 357 PIRSF PIRSF000294 44 356 4.3E-94 T 23-04-2016 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 NIDE_RS00275 c207e3423e84951a2babe51d2017fbfd 357 SUPERFAMILY SSF46626 190 341 1.61E-34 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS00275 c207e3423e84951a2babe51d2017fbfd 357 Pfam PF03150 Di-haem cytochrome c peroxidase 66 211 2.4E-46 T 23-04-2016 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 NIDE_RS00275 c207e3423e84951a2babe51d2017fbfd 357 Gene3D G3DSA:1.10.760.10 57 203 1.1E-43 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS00275 c207e3423e84951a2babe51d2017fbfd 357 Gene3D G3DSA:1.10.760.10 204 347 1.2E-48 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS00275 c207e3423e84951a2babe51d2017fbfd 357 PANTHER PTHR30600 57 351 4.0E-92 T 23-04-2016 NIDE_RS00275 c207e3423e84951a2babe51d2017fbfd 357 PANTHER PTHR30600:SF7 57 351 4.0E-92 T 23-04-2016 NIDE_RS00275 c207e3423e84951a2babe51d2017fbfd 357 Pfam PF00034 Cytochrome c 221 341 5.0E-5 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS00275 c207e3423e84951a2babe51d2017fbfd 357 SUPERFAMILY SSF46626 55 200 3.41E-46 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS11745 6c6d75bcc20bfd62c97d2015a1a0c796 200 PANTHER PTHR30309:SF0 1 198 1.9E-64 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 NIDE_RS11745 6c6d75bcc20bfd62c97d2015a1a0c796 200 PANTHER PTHR30309 1 198 1.9E-64 T 23-04-2016 NIDE_RS11745 6c6d75bcc20bfd62c97d2015a1a0c796 200 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 6 198 1.2E-51 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 NIDE_RS11745 6c6d75bcc20bfd62c97d2015a1a0c796 200 SMART SM01207 12 189 8.1E-72 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 NIDE_RS11745 6c6d75bcc20bfd62c97d2015a1a0c796 200 Pfam PF02660 Glycerol-3-phosphate acyltransferase 14 188 4.0E-46 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 NIDE_RS11745 6c6d75bcc20bfd62c97d2015a1a0c796 200 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 9 197 18.742 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 NIDE_RS14700 3739b16844f0635e1f5084e569bce7df 257 PRINTS PR01543 Arylamine N-acetyltransferase signature 68 90 3.3E-11 T 23-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 NIDE_RS14700 3739b16844f0635e1f5084e569bce7df 257 PRINTS PR01543 Arylamine N-acetyltransferase signature 20 43 3.3E-11 T 23-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 NIDE_RS14700 3739b16844f0635e1f5084e569bce7df 257 PRINTS PR01543 Arylamine N-acetyltransferase signature 44 67 3.3E-11 T 23-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 NIDE_RS14700 3739b16844f0635e1f5084e569bce7df 257 PRINTS PR01543 Arylamine N-acetyltransferase signature 127 147 3.3E-11 T 23-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 NIDE_RS14700 3739b16844f0635e1f5084e569bce7df 257 PANTHER PTHR11786 3 256 9.4E-65 T 23-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 NIDE_RS14700 3739b16844f0635e1f5084e569bce7df 257 Gene3D G3DSA:3.30.2140.10 181 253 1.7E-51 T 23-04-2016 NIDE_RS14700 3739b16844f0635e1f5084e569bce7df 257 Gene3D G3DSA:3.30.2140.10 3 84 1.7E-51 T 23-04-2016 NIDE_RS14700 3739b16844f0635e1f5084e569bce7df 257 Pfam PF00797 N-acetyltransferase 21 253 4.3E-73 T 23-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 NIDE_RS14700 3739b16844f0635e1f5084e569bce7df 257 SUPERFAMILY SSF54001 2 250 1.0E-81 T 23-04-2016 NIDE_RS00485 b4b6f027a8c18e4421584ec3bd936a36 495 Pfam PF05136 Phage portal protein, lambda family 22 364 1.4E-116 T 23-04-2016 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 NIDE_RS00485 b4b6f027a8c18e4421584ec3bd936a36 495 TIGRFAM TIGR01539 portal_lambda: phage portal protein, lambda family 21 470 7.6E-131 T 23-04-2016 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 NIDE_RS16380 8939f91def440fca4c3c660a6509fcdf 250 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 67 177 2.1E-34 T 23-04-2016 IPR018641 Transferase 1, rSAM/selenodomain-associated NIDE_RS16380 8939f91def440fca4c3c660a6509fcdf 250 SUPERFAMILY SSF53448 18 215 8.44E-38 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS16380 8939f91def440fca4c3c660a6509fcdf 250 PANTHER PTHR36529 1 244 3.5E-47 T 23-04-2016 NIDE_RS16380 8939f91def440fca4c3c660a6509fcdf 250 Gene3D G3DSA:3.90.550.10 16 199 1.9E-27 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS16380 8939f91def440fca4c3c660a6509fcdf 250 TIGRFAM TIGR04282 glyco_like_cofC: transferase 1, rSAM/selenodomain-associated 16 210 2.2E-63 T 23-04-2016 IPR018641 Transferase 1, rSAM/selenodomain-associated NIDE_RS17125 8eaf9c031ac6a3e40b5453397b9444ee 199 SUPERFAMILY SSF54427 61 177 5.12E-9 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS17125 8eaf9c031ac6a3e40b5453397b9444ee 199 Gene3D G3DSA:3.10.450.50 63 176 1.4E-6 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 Hamap MF_00580 10 kDa chaperonin [groS]. 15 99 20.531 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 PRINTS PR00297 10kDa chaperonin signature 64 76 1.9E-23 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 PRINTS PR00297 10kDa chaperonin signature 38 59 1.9E-23 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 PRINTS PR00297 10kDa chaperonin signature 85 98 1.9E-23 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 PRINTS PR00297 10kDa chaperonin signature 16 31 1.9E-23 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 SUPERFAMILY SSF50129 14 98 3.37E-26 T 23-04-2016 IPR011032 GroES-like NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 Gene3D G3DSA:2.30.33.40 15 98 4.5E-24 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 PANTHER PTHR10772 18 98 2.0E-29 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 Pfam PF00166 Chaperonin 10 Kd subunit 15 97 7.1E-25 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 SMART SM00883 15 98 3.8E-35 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 NIDE_RS06390 141e4ada333f0d7432ff1ef305405fc8 100 PANTHER PTHR10772:SF0 18 98 2.0E-29 T 23-04-2016 NIDE_RS05725 24d20fd3d2865926803d379172f992b2 344 SUPERFAMILY SSF48576 9 324 1.38E-54 T 23-04-2016 IPR008949 Isoprenoid synthase domain NIDE_RS05725 24d20fd3d2865926803d379172f992b2 344 Gene3D G3DSA:1.10.600.10 7 329 1.2E-65 T 23-04-2016 IPR008949 Isoprenoid synthase domain NIDE_RS05725 24d20fd3d2865926803d379172f992b2 344 PANTHER PTHR11626:SF4 12 324 1.1E-36 T 23-04-2016 NIDE_RS05725 24d20fd3d2865926803d379172f992b2 344 Pfam PF00494 Squalene/phytoene synthase 13 302 4.1E-56 T 23-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 NIDE_RS05725 24d20fd3d2865926803d379172f992b2 344 PANTHER PTHR11626 12 324 1.1E-36 T 23-04-2016 NIDE_RS11815 648e4f20f092e89a67a28475a6672055 301 PRINTS PR01021 OMPA domain signature 243 259 9.4E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS11815 648e4f20f092e89a67a28475a6672055 301 PRINTS PR01021 OMPA domain signature 198 220 9.4E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS11815 648e4f20f092e89a67a28475a6672055 301 PRINTS PR01021 OMPA domain signature 228 243 9.4E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS11815 648e4f20f092e89a67a28475a6672055 301 SUPERFAMILY SSF103088 184 297 6.67E-31 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS11815 648e4f20f092e89a67a28475a6672055 301 Gene3D G3DSA:3.30.1330.60 189 297 1.2E-34 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS11815 648e4f20f092e89a67a28475a6672055 301 Pfam PF00691 OmpA family 198 291 4.8E-22 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS11815 648e4f20f092e89a67a28475a6672055 301 PANTHER PTHR30128 196 301 5.5E-29 T 23-04-2016 NIDE_RS04785 83ceb26e0e5d553675c0f2e33f2037ea 143 PANTHER PTHR33202 11 142 7.7E-36 T 23-04-2016 NIDE_RS04785 83ceb26e0e5d553675c0f2e33f2037ea 143 Gene3D G3DSA:1.10.10.10 8 85 3.5E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS04785 83ceb26e0e5d553675c0f2e33f2037ea 143 Pfam PF01475 Ferric uptake regulator family 18 135 1.6E-34 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 NIDE_RS04785 83ceb26e0e5d553675c0f2e33f2037ea 143 SUPERFAMILY SSF46785 11 139 5.83E-36 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16835 8ab0a0e821f2224cc25b9b5ffe7b66e7 198 SUPERFAMILY SSF88946 11 116 1.14E-19 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS16835 8ab0a0e821f2224cc25b9b5ffe7b66e7 198 SUPERFAMILY SSF88659 132 192 1.33E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS16835 8ab0a0e821f2224cc25b9b5ffe7b66e7 198 PANTHER PTHR30173:SF16 7 193 3.4E-53 T 23-04-2016 NIDE_RS16835 8ab0a0e821f2224cc25b9b5ffe7b66e7 198 Gene3D G3DSA:1.10.10.10 133 194 9.1E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16835 8ab0a0e821f2224cc25b9b5ffe7b66e7 198 Pfam PF04542 Sigma-70 region 2 36 101 7.5E-13 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS16835 8ab0a0e821f2224cc25b9b5ffe7b66e7 198 Gene3D G3DSA:1.10.1740.10 12 126 7.5E-21 T 23-04-2016 NIDE_RS16835 8ab0a0e821f2224cc25b9b5ffe7b66e7 198 PANTHER PTHR30173 7 193 3.4E-53 T 23-04-2016 NIDE_RS16835 8ab0a0e821f2224cc25b9b5ffe7b66e7 198 Pfam PF08281 Sigma-70, region 4 136 188 1.0E-13 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS16835 8ab0a0e821f2224cc25b9b5ffe7b66e7 198 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 32 191 2.4E-25 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS09140 ad77192a27a40e0669405f206bff8dd1 259 SMART SM00382 101 234 1.1E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS09140 ad77192a27a40e0669405f206bff8dd1 259 PIRSF PIRSF003073 1 252 2.3E-88 T 23-04-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein NIDE_RS09140 ad77192a27a40e0669405f206bff8dd1 259 PANTHER PTHR30050 1 254 2.2E-65 T 23-04-2016 NIDE_RS09140 ad77192a27a40e0669405f206bff8dd1 259 SUPERFAMILY SSF52540 69 237 3.32E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09140 ad77192a27a40e0669405f206bff8dd1 259 Pfam PF01695 IstB-like ATP binding protein 57 232 4.0E-63 T 23-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 NIDE_RS09140 ad77192a27a40e0669405f206bff8dd1 259 Gene3D G3DSA:3.40.50.300 72 231 8.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06765 ad77192a27a40e0669405f206bff8dd1 259 SMART SM00382 101 234 1.1E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS06765 ad77192a27a40e0669405f206bff8dd1 259 PIRSF PIRSF003073 1 252 2.3E-88 T 23-04-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein NIDE_RS06765 ad77192a27a40e0669405f206bff8dd1 259 PANTHER PTHR30050 1 254 2.2E-65 T 23-04-2016 NIDE_RS06765 ad77192a27a40e0669405f206bff8dd1 259 SUPERFAMILY SSF52540 69 237 3.32E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06765 ad77192a27a40e0669405f206bff8dd1 259 Pfam PF01695 IstB-like ATP binding protein 57 232 4.0E-63 T 23-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 NIDE_RS06765 ad77192a27a40e0669405f206bff8dd1 259 Gene3D G3DSA:3.40.50.300 72 231 8.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03350 3299d0689b1b46305412a3228d491ce9 165 Gene3D G3DSA:3.40.50.970 4 103 2.7E-8 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS03350 3299d0689b1b46305412a3228d491ce9 165 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 111 5.3E-11 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 NIDE_RS03350 3299d0689b1b46305412a3228d491ce9 165 SUPERFAMILY SSF52518 3 155 1.03E-12 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS20740 d256ede1255a101dd4725914277e45f2 180 PANTHER PTHR21180 106 167 6.6E-19 T 23-04-2016 NIDE_RS20740 d256ede1255a101dd4725914277e45f2 180 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 105 165 6.6E-16 T 23-04-2016 IPR004509 Competence protein ComEA, helix-hairpin-helix domain NIDE_RS20740 d256ede1255a101dd4725914277e45f2 180 SUPERFAMILY SSF47781 103 170 3.78E-26 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 NIDE_RS20740 d256ede1255a101dd4725914277e45f2 180 SMART SM00278 115 134 0.0019 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NIDE_RS20740 d256ede1255a101dd4725914277e45f2 180 SMART SM00278 145 164 7.9 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 NIDE_RS20740 d256ede1255a101dd4725914277e45f2 180 Pfam PF12836 Helix-hairpin-helix motif 104 165 7.1E-24 T 23-04-2016 NIDE_RS20740 d256ede1255a101dd4725914277e45f2 180 Gene3D G3DSA:1.10.150.280 84 167 7.0E-22 T 23-04-2016 NIDE_RS07830 74b80bd68c08c46fc1d2cc8f33f9e8a9 165 Pfam PF02631 RecX family 43 155 2.3E-20 T 23-04-2016 IPR003783 Regulatory protein RecX GO:0006282 NIDE_RS07830 74b80bd68c08c46fc1d2cc8f33f9e8a9 165 PANTHER PTHR33602:SF1 19 159 1.3E-18 T 23-04-2016 NIDE_RS07830 74b80bd68c08c46fc1d2cc8f33f9e8a9 165 Gene3D G3DSA:1.10.10.10 135 157 9.0E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS07830 74b80bd68c08c46fc1d2cc8f33f9e8a9 165 Gene3D G3DSA:1.10.10.10 66 109 1.5E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS07830 74b80bd68c08c46fc1d2cc8f33f9e8a9 165 PANTHER PTHR33602 19 159 1.3E-18 T 23-04-2016 NIDE_RS07830 74b80bd68c08c46fc1d2cc8f33f9e8a9 165 Hamap MF_01114 Regulatory protein RecX [recX]. 11 160 11.757 T 23-04-2016 IPR003783 Regulatory protein RecX GO:0006282 NIDE_RS12980 a883311612b3e14471379837267d4c72 135 Pfam PF13633 Prokaryotic N-terminal methylation site 19 43 5.0E-9 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS12980 a883311612b3e14471379837267d4c72 135 PANTHER PTHR30093:SF6 19 104 2.9E-28 T 23-04-2016 NIDE_RS12980 a883311612b3e14471379837267d4c72 135 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 18 40 2.2E-8 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS12980 a883311612b3e14471379837267d4c72 135 PANTHER PTHR30093 19 104 2.9E-28 T 23-04-2016 NIDE_RS12980 a883311612b3e14471379837267d4c72 135 PRINTS PR00813 Bacterial general secretion pathway protein G signature 55 73 8.7E-12 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 NIDE_RS12980 a883311612b3e14471379837267d4c72 135 PRINTS PR00813 Bacterial general secretion pathway protein G signature 19 44 8.7E-12 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 NIDE_RS12980 a883311612b3e14471379837267d4c72 135 Gene3D G3DSA:3.30.700.10 20 82 5.3E-14 T 23-04-2016 NIDE_RS12980 a883311612b3e14471379837267d4c72 135 SUPERFAMILY SSF54523 20 111 1.73E-19 T 23-04-2016 NIDE_RS10085 c60b1560ff0d1d38e67156def46c65ae 268 SUPERFAMILY SSF81301 42 145 1.1E-11 T 23-04-2016 NIDE_RS10085 c60b1560ff0d1d38e67156def46c65ae 268 Gene3D G3DSA:3.30.460.10 45 150 2.0E-9 T 23-04-2016 NIDE_RS06275 4a5d199a76da3b33abea98c84a2701a4 237 Gene3D G3DSA:3.30.450.40 3 174 2.0E-43 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS06275 4a5d199a76da3b33abea98c84a2701a4 237 PANTHER PTHR11347 8 234 9.9E-15 T 23-04-2016 NIDE_RS06275 4a5d199a76da3b33abea98c84a2701a4 237 PANTHER PTHR11347:SF114 8 234 9.9E-15 T 23-04-2016 IPR027035 Hypoxia/Redox sensor histidine kinase response regulator DosT/DevS GO:0004673|GO:0046777|GO:0070483 NIDE_RS06275 4a5d199a76da3b33abea98c84a2701a4 237 SUPERFAMILY SSF55781 7 178 6.38E-36 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS06275 4a5d199a76da3b33abea98c84a2701a4 237 SMART SM01012 168 223 1.2E-18 T 23-04-2016 IPR005561 ANTAR domain GO:0003723 NIDE_RS06275 4a5d199a76da3b33abea98c84a2701a4 237 Pfam PF13185 GAF domain 24 161 2.0E-22 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS06275 4a5d199a76da3b33abea98c84a2701a4 237 SMART SM00065 23 170 5.9E-25 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS06275 4a5d199a76da3b33abea98c84a2701a4 237 Pfam PF03861 ANTAR domain 172 223 1.3E-17 T 23-04-2016 IPR005561 ANTAR domain GO:0003723 NIDE_RS06275 4a5d199a76da3b33abea98c84a2701a4 237 Gene3D G3DSA:1.10.10.10 175 227 2.1E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16855 006cba9ad904a15b0d4380037bb6ab17 95 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 22 84 4.7E-10 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NIDE_RS16855 006cba9ad904a15b0d4380037bb6ab17 95 SUPERFAMILY SSF143011 8 82 5.23E-12 T 23-04-2016 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 Pfam PF02954 Bacterial regulatory protein, Fis family 425 463 8.5E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 Gene3D G3DSA:1.10.10.60 390 467 1.5E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 Gene3D G3DSA:3.40.50.300 161 335 5.6E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 SUPERFAMILY SSF55785 19 123 3.29E-5 T 23-04-2016 IPR000014 PAS domain NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 249 264 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 447 467 4.9E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 430 447 4.9E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 SUPERFAMILY SSF46689 376 466 5.73E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 Gene3D G3DSA:3.30.450.20 19 100 5.2E-4 T 23-04-2016 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 Gene3D G3DSA:1.10.8.60 336 389 1.3E-20 T 23-04-2016 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 PANTHER PTHR32071 150 466 1.0E-153 T 23-04-2016 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 187 200 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 SMART SM00382 183 326 1.7E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 Pfam PF00158 Sigma-54 interaction domain 163 329 1.2E-70 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 376 385 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS17945 4dca784caf7d969baefc81162fe854b4 467 SUPERFAMILY SSF52540 162 405 1.42E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06685 8a50c476c8ca9253d02788984d38d3df 342 SUPERFAMILY SSF56524 40 235 9.81E-53 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS06685 8a50c476c8ca9253d02788984d38d3df 342 PANTHER PTHR19372 40 317 3.3E-55 T 23-04-2016 NIDE_RS06685 8a50c476c8ca9253d02788984d38d3df 342 Gene3D G3DSA:3.90.420.10 46 232 4.4E-54 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS06685 8a50c476c8ca9253d02788984d38d3df 342 Pfam PF00174 Oxidoreductase molybdopterin binding domain 71 217 4.9E-41 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 NIDE_RS06685 8a50c476c8ca9253d02788984d38d3df 342 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 232 317 2.5E-7 T 23-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 NIDE_RS06685 8a50c476c8ca9253d02788984d38d3df 342 Gene3D G3DSA:2.60.40.650 233 319 4.8E-21 T 23-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 NIDE_RS06685 8a50c476c8ca9253d02788984d38d3df 342 SUPERFAMILY SSF81296 229 333 1.26E-20 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 Pfam PF00005 ABC transporter 26 196 1.6E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 Pfam PF00005 ABC transporter 345 477 3.2E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 PANTHER PTHR19211 7 560 0.0 T 23-04-2016 NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 SUPERFAMILY SSF52540 13 249 7.82E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 Gene3D G3DSA:3.40.50.300 8 97 1.1E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 Gene3D G3DSA:3.40.50.300 328 542 1.9E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 Gene3D G3DSA:3.40.50.300 131 269 1.1E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 SUPERFAMILY SSF52540 332 521 4.79E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 Gene3D G3DSA:3.40.50.300 270 306 3.0E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 Pfam PF12848 ABC transporter 235 305 1.7E-10 T 23-04-2016 IPR032781 ABC-transporter extension domain NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 6 557 7.9E-282 T 23-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 PANTHER PTHR19211:SF7 7 560 0.0 T 23-04-2016 NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 SMART SM00382 35 245 2.9E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS19960 fe746a81fbcbcac30dd0f926c9ca9598 560 SMART SM00382 353 530 7.2E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS16570 cae8be23e5eadef1523d8dbef478a160 538 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 9 523 1.2E-115 T 23-04-2016 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 NIDE_RS16570 cae8be23e5eadef1523d8dbef478a160 538 Pfam PF00999 Sodium/hydrogen exchanger family 10 408 6.4E-54 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 NIDE_RS16570 cae8be23e5eadef1523d8dbef478a160 538 PANTHER PTHR10110:SF86 9 521 1.2E-89 T 23-04-2016 NIDE_RS16570 cae8be23e5eadef1523d8dbef478a160 538 PANTHER PTHR10110 9 521 1.2E-89 T 23-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 NIDE_RS17685 ef8bb6bd39b379bfcafdc3af5a53f512 284 SUPERFAMILY SSF52540 66 251 8.31E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17685 ef8bb6bd39b379bfcafdc3af5a53f512 284 PANTHER PTHR34383 38 283 5.7E-121 T 23-04-2016 NIDE_RS17685 ef8bb6bd39b379bfcafdc3af5a53f512 284 PANTHER PTHR34383:SF1 38 283 5.7E-121 T 23-04-2016 NIDE_RS17685 ef8bb6bd39b379bfcafdc3af5a53f512 284 PIRSF PIRSF028756 7 283 1.7E-110 T 23-04-2016 IPR016898 Polyphosphate kinase 2 NIDE_RS17685 ef8bb6bd39b379bfcafdc3af5a53f512 284 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 39 259 1.9E-99 T 23-04-2016 IPR022488 Polyphosphate kinase-2-related NIDE_RS17685 ef8bb6bd39b379bfcafdc3af5a53f512 284 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 38 261 1.0E-108 T 23-04-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 NIDE_RS17685 ef8bb6bd39b379bfcafdc3af5a53f512 284 Gene3D G3DSA:3.40.50.300 23 267 1.3E-101 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01415 5675b0162b483cf96af17d900c55b1fb 336 Pfam PF05987 Bacterial protein of unknown function (DUF898) 4 327 2.9E-81 T 23-04-2016 IPR010295 Protein of unknown function DUF898 NIDE_RS06130 43435b4fc0ebc6a69a453d877da0e2fb 194 PIRSF PIRSF002161 12 194 3.9E-65 T 23-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06130 43435b4fc0ebc6a69a453d877da0e2fb 194 PANTHER PTHR11994 12 193 9.1E-90 T 23-04-2016 NIDE_RS06130 43435b4fc0ebc6a69a453d877da0e2fb 194 ProSitePatterns PS00358 Ribosomal protein L5 signature. 72 88 - T 23-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06130 43435b4fc0ebc6a69a453d877da0e2fb 194 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 16 194 44.695 T 23-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06130 43435b4fc0ebc6a69a453d877da0e2fb 194 Pfam PF00281 Ribosomal protein L5 39 95 1.3E-24 T 23-04-2016 IPR031310 Ribosomal protein L5, N-terminal NIDE_RS06130 43435b4fc0ebc6a69a453d877da0e2fb 194 SUPERFAMILY SSF55282 18 193 1.95E-75 T 23-04-2016 IPR022803 Ribosomal protein L5 domain NIDE_RS06130 43435b4fc0ebc6a69a453d877da0e2fb 194 Pfam PF00673 ribosomal L5P family C-terminus 99 192 1.2E-40 T 23-04-2016 IPR031309 Ribosomal protein L5, C-terminal NIDE_RS06130 43435b4fc0ebc6a69a453d877da0e2fb 194 Gene3D G3DSA:3.30.1440.10 17 193 1.4E-75 T 23-04-2016 IPR022803 Ribosomal protein L5 domain NIDE_RS01230 585a710673a14c5cbb54053a77e02be5 400 PANTHER PTHR30329:SF4 220 398 1.8E-34 T 23-04-2016 NIDE_RS01230 585a710673a14c5cbb54053a77e02be5 400 PANTHER PTHR30329 220 398 1.8E-34 T 23-04-2016 NIDE_RS01230 585a710673a14c5cbb54053a77e02be5 400 Pfam PF00691 OmpA family 290 392 2.4E-19 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS01230 585a710673a14c5cbb54053a77e02be5 400 Gene3D G3DSA:3.30.1330.60 267 398 3.5E-35 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS01230 585a710673a14c5cbb54053a77e02be5 400 SUPERFAMILY SSF103088 278 398 1.44E-32 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS19920 72ff9b03c4d25deaea8bf9a1f5405abe 487 SUPERFAMILY SSF111283 6 477 4.32E-90 T 23-04-2016 NIDE_RS19920 72ff9b03c4d25deaea8bf9a1f5405abe 487 PANTHER PTHR30624 1 483 2.7E-175 T 23-04-2016 NIDE_RS19920 72ff9b03c4d25deaea8bf9a1f5405abe 487 Pfam PF01523 Putative modulator of DNA gyrase 24 329 4.8E-46 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- NIDE_RS19920 72ff9b03c4d25deaea8bf9a1f5405abe 487 PANTHER PTHR30624:SF10 1 483 2.7E-175 T 23-04-2016 NIDE_RS16635 409c947774bbfe6f673c2d2282033c8c 520 Pfam PF04851 Type III restriction enzyme, res subunit 11 164 7.7E-14 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 NIDE_RS16635 409c947774bbfe6f673c2d2282033c8c 520 Gene3D G3DSA:3.40.50.300 258 377 9.2E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16635 409c947774bbfe6f673c2d2282033c8c 520 Gene3D G3DSA:3.40.50.300 12 168 3.5E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16635 409c947774bbfe6f673c2d2282033c8c 520 Pfam PF00271 Helicase conserved C-terminal domain 271 361 2.5E-4 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS16635 409c947774bbfe6f673c2d2282033c8c 520 SUPERFAMILY SSF52540 234 363 5.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16635 409c947774bbfe6f673c2d2282033c8c 520 SUPERFAMILY SSF52540 23 166 5.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16635 409c947774bbfe6f673c2d2282033c8c 520 SMART SM00487 8 192 2.2E-11 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS05360 575aea6d059a11b1f2de5dae4f9e7984 537 PANTHER PTHR10794 360 532 4.7E-16 T 23-04-2016 NIDE_RS05360 575aea6d059a11b1f2de5dae4f9e7984 537 Pfam PF02517 CAAX protease self-immunity 439 526 1.1E-19 T 23-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 NIDE_RS05360 575aea6d059a11b1f2de5dae4f9e7984 537 PANTHER PTHR10794:SF37 360 532 4.7E-16 T 23-04-2016 NIDE_RS18480 bf4d7851a93fa00f1e8d1fd82e932530 148 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 54 142 1.7E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS18480 bf4d7851a93fa00f1e8d1fd82e932530 148 Gene3D G3DSA:1.10.760.10 42 147 2.9E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS18480 bf4d7851a93fa00f1e8d1fd82e932530 148 SUPERFAMILY SSF46626 11 146 6.35E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS09515 a0fc71193c7acc450397c24d11cd89ea 1076 PANTHER PTHR41262:SF1 284 937 9.1E-24 T 23-04-2016 NIDE_RS09515 a0fc71193c7acc450397c24d11cd89ea 1076 PANTHER PTHR41262 284 937 9.1E-24 T 23-04-2016 NIDE_RS09515 a0fc71193c7acc450397c24d11cd89ea 1076 Pfam PF12705 PD-(D/E)XK nuclease superfamily 763 1046 2.6E-32 T 23-04-2016 NIDE_RS09515 a0fc71193c7acc450397c24d11cd89ea 1076 Gene3D G3DSA:3.40.50.300 559 626 3.0E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09515 a0fc71193c7acc450397c24d11cd89ea 1076 Gene3D G3DSA:3.40.50.300 281 361 3.0E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09515 a0fc71193c7acc450397c24d11cd89ea 1076 SUPERFAMILY SSF52540 284 660 2.87E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18190 8de40c10f5ab909a749cf13d224d2819 94 Pfam PF12728 Helix-turn-helix domain 3 48 2.7E-9 T 23-04-2016 NIDE_RS18190 8de40c10f5ab909a749cf13d224d2819 94 Gene3D G3DSA:1.10.10.10 3 49 7.0E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS18190 8de40c10f5ab909a749cf13d224d2819 94 SUPERFAMILY SSF46955 3 48 5.25E-6 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS06760 09425aa1fbcbdb624d63bef16e6787e2 445 Pfam PF00665 Integrase core domain 143 267 8.4E-19 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS06760 09425aa1fbcbdb624d63bef16e6787e2 445 Gene3D G3DSA:1.10.10.10 33 63 5.5E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS06760 09425aa1fbcbdb624d63bef16e6787e2 445 PANTHER PTHR35004 25 410 4.7E-71 T 23-04-2016 NIDE_RS06760 09425aa1fbcbdb624d63bef16e6787e2 445 Gene3D G3DSA:3.30.420.10 143 299 2.3E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS06760 09425aa1fbcbdb624d63bef16e6787e2 445 PANTHER PTHR35004:SF2 25 410 4.7E-71 T 23-04-2016 NIDE_RS06760 09425aa1fbcbdb624d63bef16e6787e2 445 SUPERFAMILY SSF53098 143 304 5.94E-12 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09770 09425aa1fbcbdb624d63bef16e6787e2 445 Pfam PF00665 Integrase core domain 143 267 8.4E-19 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS09770 09425aa1fbcbdb624d63bef16e6787e2 445 Gene3D G3DSA:1.10.10.10 33 63 5.5E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS09770 09425aa1fbcbdb624d63bef16e6787e2 445 PANTHER PTHR35004 25 410 4.7E-71 T 23-04-2016 NIDE_RS09770 09425aa1fbcbdb624d63bef16e6787e2 445 Gene3D G3DSA:3.30.420.10 143 299 2.3E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09770 09425aa1fbcbdb624d63bef16e6787e2 445 PANTHER PTHR35004:SF2 25 410 4.7E-71 T 23-04-2016 NIDE_RS09770 09425aa1fbcbdb624d63bef16e6787e2 445 SUPERFAMILY SSF53098 143 304 5.94E-12 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09135 09425aa1fbcbdb624d63bef16e6787e2 445 Pfam PF00665 Integrase core domain 143 267 8.4E-19 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS09135 09425aa1fbcbdb624d63bef16e6787e2 445 Gene3D G3DSA:1.10.10.10 33 63 5.5E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS09135 09425aa1fbcbdb624d63bef16e6787e2 445 PANTHER PTHR35004 25 410 4.7E-71 T 23-04-2016 NIDE_RS09135 09425aa1fbcbdb624d63bef16e6787e2 445 Gene3D G3DSA:3.30.420.10 143 299 2.3E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09135 09425aa1fbcbdb624d63bef16e6787e2 445 PANTHER PTHR35004:SF2 25 410 4.7E-71 T 23-04-2016 NIDE_RS09135 09425aa1fbcbdb624d63bef16e6787e2 445 SUPERFAMILY SSF53098 143 304 5.94E-12 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS02805 78686761d53722e9fd3fcd531bb0dc95 206 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 54 196 2.5E-40 T 23-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 NIDE_RS02805 78686761d53722e9fd3fcd531bb0dc95 206 PANTHER PTHR33269 37 203 1.5E-54 T 23-04-2016 NIDE_RS02805 78686761d53722e9fd3fcd531bb0dc95 206 PANTHER PTHR33269:SF1 37 203 1.5E-54 T 23-04-2016 NIDE_RS08730 6a8702da04f9059d02f51e1466c3e7f4 419 SUPERFAMILY SSF56300 1 299 2.49E-50 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like NIDE_RS08730 6a8702da04f9059d02f51e1466c3e7f4 419 PANTHER PTHR30337 1 387 2.9E-69 T 23-04-2016 NIDE_RS08730 6a8702da04f9059d02f51e1466c3e7f4 419 Gene3D G3DSA:3.60.21.10 1 244 1.2E-42 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like NIDE_RS08730 6a8702da04f9059d02f51e1466c3e7f4 419 PIRSF PIRSF033091 1 419 8.8E-107 T 23-04-2016 IPR014576 Predicted phosphoesterase, YhaO type NIDE_RS08730 6a8702da04f9059d02f51e1466c3e7f4 419 PANTHER PTHR30337:SF7 1 387 2.9E-69 T 23-04-2016 NIDE_RS08730 6a8702da04f9059d02f51e1466c3e7f4 419 Pfam PF00149 Calcineurin-like phosphoesterase 1 196 1.4E-10 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 NIDE_RS12610 8834dd0688dd7d305df6ca991d4cb534 86 PANTHER PTHR33279 1 83 1.1E-20 T 23-04-2016 NIDE_RS12610 8834dd0688dd7d305df6ca991d4cb534 86 Pfam PF01206 Sulfurtransferase TusA 13 82 3.1E-21 T 23-04-2016 IPR001455 TusA-like domain NIDE_RS12610 8834dd0688dd7d305df6ca991d4cb534 86 Gene3D G3DSA:3.30.110.40 6 83 6.0E-24 T 23-04-2016 IPR001455 TusA-like domain NIDE_RS12610 8834dd0688dd7d305df6ca991d4cb534 86 SUPERFAMILY SSF64307 5 82 7.06E-23 T 23-04-2016 IPR001455 TusA-like domain NIDE_RS15580 7d4315b5af65dee7681938249560bc3e 557 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 7 557 44.807 T 23-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS15580 7d4315b5af65dee7681938249560bc3e 557 PANTHER PTHR21000:SF5 9 556 1.2E-294 T 23-04-2016 NIDE_RS15580 7d4315b5af65dee7681938249560bc3e 557 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 465 476 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS15580 7d4315b5af65dee7681938249560bc3e 557 PANTHER PTHR21000 9 556 1.2E-294 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS15580 7d4315b5af65dee7681938249560bc3e 557 Pfam PF00920 Dehydratase family 37 554 4.0E-208 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS15580 7d4315b5af65dee7681938249560bc3e 557 SUPERFAMILY SSF143975 6 378 1.19E-130 T 23-04-2016 NIDE_RS15580 7d4315b5af65dee7681938249560bc3e 557 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 125 135 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS15580 7d4315b5af65dee7681938249560bc3e 557 SUPERFAMILY SSF52016 379 556 1.49E-56 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel NIDE_RS15580 7d4315b5af65dee7681938249560bc3e 557 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 20 556 2.9E-212 T 23-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 Pfam PF04851 Type III restriction enzyme, res subunit 152 327 3.3E-34 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 PANTHER PTHR30195 2 532 9.8E-63 T 23-04-2016 NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 Gene3D G3DSA:3.40.50.300 404 530 7.0E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 Pfam PF00271 Helicase conserved C-terminal domain 409 519 7.5E-7 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 SUPERFAMILY SSF52540 163 328 3.79E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 SUPERFAMILY SSF52540 386 526 3.79E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 SMART SM00487 147 363 3.6E-17 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 Gene3D G3DSA:3.40.50.300 153 241 1.6E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 Gene3D G3DSA:3.40.50.300 273 337 1.6E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 Pfam PF08463 EcoEI R protein C-terminal 634 790 1.2E-24 T 23-04-2016 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 NIDE_RS12015 467a8a8de90523509298def121f6dc04 798 PANTHER PTHR30195:SF3 2 532 9.8E-63 T 23-04-2016 NIDE_RS19900 03fa97c682d7e87d96416dd8ac9f65d1 273 SUPERFAMILY SSF53335 34 171 3.84E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS19900 03fa97c682d7e87d96416dd8ac9f65d1 273 Gene3D G3DSA:3.40.50.150 34 199 4.1E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS19900 03fa97c682d7e87d96416dd8ac9f65d1 273 PANTHER PTHR10108 1 148 9.4E-21 T 23-04-2016 NIDE_RS19900 03fa97c682d7e87d96416dd8ac9f65d1 273 PANTHER PTHR10108 245 254 9.4E-21 T 23-04-2016 NIDE_RS19900 03fa97c682d7e87d96416dd8ac9f65d1 273 Pfam PF08241 Methyltransferase domain 47 139 2.8E-16 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS07260 0835679fadae7f1ee5b126ba31986989 262 SUPERFAMILY SSF56281 1 241 1.23E-32 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS07260 0835679fadae7f1ee5b126ba31986989 262 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 89 110 1.8E-5 T 23-04-2016 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 NIDE_RS07260 0835679fadae7f1ee5b126ba31986989 262 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 57 75 1.8E-5 T 23-04-2016 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 NIDE_RS07260 0835679fadae7f1ee5b126ba31986989 262 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 203 216 1.8E-5 T 23-04-2016 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 NIDE_RS07260 0835679fadae7f1ee5b126ba31986989 262 Gene3D G3DSA:3.60.15.10 26 241 2.7E-27 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS07260 0835679fadae7f1ee5b126ba31986989 262 Pfam PF12706 Beta-lactamase superfamily domain 48 220 8.4E-15 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS04605 4fda943f88fb58edeec9ac365af38ef4 266 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 64 86 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NIDE_RS04605 4fda943f88fb58edeec9ac365af38ef4 266 PANTHER PTHR15362 17 264 7.3E-32 T 23-04-2016 NIDE_RS04605 4fda943f88fb58edeec9ac365af38ef4 266 PANTHER PTHR15362:SF5 17 264 7.3E-32 T 23-04-2016 NIDE_RS04605 4fda943f88fb58edeec9ac365af38ef4 266 Pfam PF01066 CDP-alcohol phosphatidyltransferase 23 86 4.5E-14 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NIDE_RS04605 4fda943f88fb58edeec9ac365af38ef4 266 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 28 191 1.8E-37 T 23-04-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 NIDE_RS13865 c8caba6db51a6b5b7516d5cf698c8bd1 267 PANTHER PTHR10859 3 126 9.2E-24 T 23-04-2016 NIDE_RS13865 c8caba6db51a6b5b7516d5cf698c8bd1 267 PANTHER PTHR10859:SF99 3 126 9.2E-24 T 23-04-2016 NIDE_RS13865 c8caba6db51a6b5b7516d5cf698c8bd1 267 Pfam PF00535 Glycosyl transferase family 2 7 130 2.8E-16 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS13865 c8caba6db51a6b5b7516d5cf698c8bd1 267 Gene3D G3DSA:3.90.550.10 6 134 8.3E-17 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13865 c8caba6db51a6b5b7516d5cf698c8bd1 267 SUPERFAMILY SSF53448 6 150 3.56E-27 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 Pfam PF00873 AcrB/AcrD/AcrF family 4 1010 1.5E-301 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 SUPERFAMILY SSF82866 290 488 5.36E-49 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 Gene3D G3DSA:1.10.3850.10 273 490 9.8E-59 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 Gene3D G3DSA:1.10.3850.10 798 1011 5.5E-58 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 Gene3D G3DSA:3.30.70.1430 559 655 3.6E-19 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 SUPERFAMILY SSF82693 557 656 6.28E-22 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 SUPERFAMILY SSF82693 267 323 5.23E-24 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 SUPERFAMILY SSF82693 138 181 5.23E-24 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 Gene3D G3DSA:3.30.2090.10 705 794 8.6E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 SUPERFAMILY SSF82866 820 1010 1.03E-45 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 SUPERFAMILY SSF82693 792 841 2.41E-8 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 SUPERFAMILY SSF82693 665 705 2.41E-8 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 SUPERFAMILY SSF82693 41 134 3.92E-24 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 SUPERFAMILY SSF82714 706 791 3.92E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 2.2E-76 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PRINTS PR00702 Acriflavin resistance protein family signature 544 561 2.2E-76 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 2.2E-76 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.2E-76 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PRINTS PR00702 Acriflavin resistance protein family signature 611 625 2.2E-76 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 2.2E-76 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 2.2E-76 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 2.2E-76 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.2E-76 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 Gene3D G3DSA:3.30.70.1430 41 141 3.7E-28 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 Gene3D G3DSA:3.30.2090.10 182 265 9.2E-21 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PANTHER PTHR32063 1 1011 0.0 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 PANTHER PTHR32063:SF14 1 1011 0.0 T 23-04-2016 NIDE_RS09900 c03699ee4b12a68db41c1b2ffc33b0f0 1038 SUPERFAMILY SSF82714 182 265 2.62E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 548 42.869 T 23-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 SUPERFAMILY SSF82866 345 542 2.62E-44 T 23-04-2016 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 298 528 4.5E-80 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 PANTHER PTHR30081:SF1 266 547 2.8E-145 T 23-04-2016 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 PANTHER PTHR30081:SF1 33 98 2.8E-145 T 23-04-2016 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 PANTHER PTHR30081:SF1 150 208 2.8E-145 T 23-04-2016 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 48 534 7.7E-140 T 23-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 Gene3D G3DSA:1.20.1640.10 349 545 2.0E-29 T 23-04-2016 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 PANTHER PTHR30081 266 547 2.8E-145 T 23-04-2016 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 PANTHER PTHR30081 33 98 2.8E-145 T 23-04-2016 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 PANTHER PTHR30081 150 208 2.8E-145 T 23-04-2016 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 Pfam PF02355 Protein export membrane protein 369 527 5.7E-22 T 23-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 PRINTS PR00702 Acriflavin resistance protein family signature 512 535 1.5E-8 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 PRINTS PR00702 Acriflavin resistance protein family signature 384 407 1.5E-8 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 PRINTS PR00702 Acriflavin resistance protein family signature 437 461 1.5E-8 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS15015 a04b921bc640b8e6df91763fa5bf8345 549 Pfam PF07549 SecD/SecF GG Motif 41 64 3.6E-6 T 23-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site NIDE_RS03775 6cfb34627686352ebd43985b4c17390d 142 SUPERFAMILY SSF55620 32 132 2.22E-22 T 23-04-2016 NIDE_RS03775 6cfb34627686352ebd43985b4c17390d 142 Gene3D G3DSA:3.30.1130.10 29 140 6.5E-37 T 23-04-2016 NIDE_RS03775 6cfb34627686352ebd43985b4c17390d 142 Pfam PF14489 QueF-like protein 65 140 8.8E-27 T 23-04-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS03775 6cfb34627686352ebd43985b4c17390d 142 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 36 140 1.2E-38 T 23-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS03775 6cfb34627686352ebd43985b4c17390d 142 PANTHER PTHR34354 34 140 1.2E-35 T 23-04-2016 NIDE_RS03775 6cfb34627686352ebd43985b4c17390d 142 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 142 38.074 T 23-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS03775 6cfb34627686352ebd43985b4c17390d 142 PANTHER PTHR34354:SF1 34 140 1.2E-35 T 23-04-2016 NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 PIRSF PIRSF001589 1 665 6.0E-169 T 23-04-2016 NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 PANTHER PTHR11772 2 397 1.6E-211 T 23-04-2016 NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 PANTHER PTHR11772 494 658 1.6E-211 T 23-04-2016 NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 PANTHER PTHR11772:SF10 2 397 1.6E-211 T 23-04-2016 NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 PANTHER PTHR11772:SF10 494 658 1.6E-211 T 23-04-2016 NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 Gene3D G3DSA:3.60.20.10 1 230 8.3E-71 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 Gene3D G3DSA:3.40.50.620 498 646 2.9E-96 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 Gene3D G3DSA:3.40.50.620 231 392 2.9E-96 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 582 8.0E-152 T 23-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 SUPERFAMILY SSF52402 502 642 5.12E-96 T 23-04-2016 NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 SUPERFAMILY SSF52402 245 395 5.12E-96 T 23-04-2016 NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 Pfam PF00733 Asparagine synthase 255 646 1.2E-117 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 SUPERFAMILY SSF56235 1 231 1.8E-64 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS12380 b1e10d9419c64ba898ec59d1e8684db3 668 Pfam PF13537 Glutamine amidotransferase domain 52 173 2.0E-46 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain NIDE_RS09965 f2ac525e317a824c6d8ffbec8e506081 149 SUPERFAMILY SSF46785 10 137 4.47E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS09965 f2ac525e317a824c6d8ffbec8e506081 149 PANTHER PTHR33202 1 140 4.6E-25 T 23-04-2016 NIDE_RS09965 f2ac525e317a824c6d8ffbec8e506081 149 Pfam PF01475 Ferric uptake regulator family 17 133 5.0E-23 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 NIDE_RS09965 f2ac525e317a824c6d8ffbec8e506081 149 Gene3D G3DSA:1.10.10.10 6 83 1.8E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS01945 4cfd75fc6deb76730013d780f2e94cab 337 SUPERFAMILY SSF51569 1 335 4.76E-119 T 23-04-2016 NIDE_RS01945 4cfd75fc6deb76730013d780f2e94cab 337 Gene3D G3DSA:3.30.70.1140 1 70 2.4E-26 T 23-04-2016 NIDE_RS01945 4cfd75fc6deb76730013d780f2e94cab 337 Gene3D G3DSA:3.20.20.70 72 335 2.1E-100 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS01945 4cfd75fc6deb76730013d780f2e94cab 337 PANTHER PTHR21057 2 335 2.5E-183 T 23-04-2016 NIDE_RS01945 4cfd75fc6deb76730013d780f2e94cab 337 PANTHER PTHR21057:SF1 2 335 2.5E-183 T 23-04-2016 NIDE_RS01945 4cfd75fc6deb76730013d780f2e94cab 337 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 71 328 2.0E-122 T 23-04-2016 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 NIDE_RS01945 4cfd75fc6deb76730013d780f2e94cab 337 Pfam PF00793 DAHP synthetase I family 87 323 1.5E-74 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 PIRSF PIRSF000098 2 435 2.5E-160 T 23-04-2016 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 SUPERFAMILY SSF55347 138 303 2.94E-50 T 23-04-2016 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 PANTHER PTHR21499:SF2 1 375 2.1E-130 T 23-04-2016 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 SUPERFAMILY SSF55021 353 422 1.75E-14 T 23-04-2016 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 11 129 5.4E-19 T 23-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 Gene3D G3DSA:3.30.70.260 355 418 4.7E-9 T 23-04-2016 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 SUPERFAMILY SSF51735 2 159 2.63E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 Pfam PF00742 Homoserine dehydrogenase 138 316 1.3E-61 T 23-04-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 Pfam PF01842 ACT domain 355 418 2.6E-14 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 Gene3D G3DSA:3.40.50.720 2 149 2.3E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 Gene3D G3DSA:3.30.360.10 150 300 1.9E-53 T 23-04-2016 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 184 206 - T 23-04-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 NIDE_RS18770 4f7fda24c67e87d571445cf5176624c5 437 PANTHER PTHR21499 1 375 2.1E-130 T 23-04-2016 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 SUPERFAMILY SSF48029 6 120 2.59E-17 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 PANTHER PTHR30534 1 331 1.1E-92 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 Gene3D G3DSA:1.10.220.30 73 183 4.4E-25 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 Gene3D G3DSA:1.10.220.30 193 330 1.4E-42 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 Pfam PF14842 FliG N-terminal domain 4 100 4.6E-24 T 23-04-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 PIRSF PIRSF003161 1 331 6.3E-113 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 Pfam PF01706 FliG C-terminal domain 216 322 1.2E-41 T 23-04-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 3 330 5.0E-98 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 PANTHER PTHR30534:SF0 1 331 1.1E-92 T 23-04-2016 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 Pfam PF14841 FliG middle domain 113 184 8.5E-22 T 23-04-2016 IPR032779 Flagellar motor switch protein FliG, middle domain NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 Gene3D G3DSA:1.10.220.30 7 65 9.5E-9 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 SUPERFAMILY SSF48029 112 323 1.31E-62 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 193 218 1.05E-62 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 5 21 1.05E-62 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 34 60 1.05E-62 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 1.05E-62 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 112 135 1.05E-62 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 224 244 1.05E-62 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NIDE_RS10465 4ae9ae6e8ad4687a10649ede25efd503 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 270 296 1.05E-62 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 NIDE_RS11395 a3a6e1ec8ede9e43c5060e18076849dc 616 Pfam PF13941 MutL protein 20 496 8.8E-148 T 23-04-2016 IPR006230 Protein MutL NIDE_RS08565 204bb61abcfa5d6a512084600597a632 392 Pfam PF13487 HD domain 248 311 4.6E-18 T 23-04-2016 NIDE_RS08565 204bb61abcfa5d6a512084600597a632 392 SMART SM00471 193 330 9.4E-10 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS08565 204bb61abcfa5d6a512084600597a632 392 SMART SM00448 19 130 2.2E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08565 204bb61abcfa5d6a512084600597a632 392 SUPERFAMILY SSF109604 179 361 4.85E-40 T 23-04-2016 NIDE_RS08565 204bb61abcfa5d6a512084600597a632 392 Pfam PF00072 Response regulator receiver domain 21 127 1.0E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08565 204bb61abcfa5d6a512084600597a632 392 PANTHER PTHR26402 19 188 1.9E-36 T 23-04-2016 NIDE_RS08565 204bb61abcfa5d6a512084600597a632 392 Gene3D G3DSA:3.40.50.2300 18 165 7.6E-34 T 23-04-2016 NIDE_RS08565 204bb61abcfa5d6a512084600597a632 392 SUPERFAMILY SSF52172 18 175 2.7E-38 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS08565 204bb61abcfa5d6a512084600597a632 392 Gene3D G3DSA:1.10.3210.10 181 361 3.8E-23 T 23-04-2016 IPR006674 HD domain NIDE_RS06750 04803e3ae906654df28447717136060e 106 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 105 5.8E-38 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 NIDE_RS06750 04803e3ae906654df28447717136060e 106 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 87 104 - T 23-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site NIDE_RS06750 04803e3ae906654df28447717136060e 106 PANTHER PTHR10072 1 105 4.1E-41 T 23-04-2016 NIDE_RS06750 04803e3ae906654df28447717136060e 106 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 101 2.5E-22 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS06750 04803e3ae906654df28447717136060e 106 Gene3D G3DSA:2.60.300.12 1 95 7.1E-32 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS06750 04803e3ae906654df28447717136060e 106 SUPERFAMILY SSF89360 1 95 5.23E-30 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 SUPERFAMILY SSF51735 3 242 1.37E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 8.5E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 8.5E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 8.5E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 8.5E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 8.5E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 8.5E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 Gene3D G3DSA:3.40.50.720 2 242 2.3E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 186 9.2E-4 T 23-04-2016 NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 239 3.0E-48 T 23-04-2016 NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PANTHER PTHR24322:SF211 155 187 2.3E-45 T 23-04-2016 NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PANTHER PTHR24322:SF211 8 137 2.3E-45 T 23-04-2016 NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 8.9E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 8.9E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 8.9E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PANTHER PTHR24322 155 187 2.3E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS16385 8ae2ec1b7cd4cfad570baa9a118042c1 244 PANTHER PTHR24322 8 137 2.3E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS03950 0248f0b31b1638d49004ff577f9482a2 320 PANTHER PTHR30426 1 310 5.2E-152 T 23-04-2016 NIDE_RS03950 0248f0b31b1638d49004ff577f9482a2 320 Pfam PF02401 LytB protein 3 279 3.5E-90 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 NIDE_RS03950 0248f0b31b1638d49004ff577f9482a2 320 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 281 6.3E-101 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 NIDE_RS03950 0248f0b31b1638d49004ff577f9482a2 320 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 283 37.927 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 NIDE_RS00855 9c52c564cbbb9c7fed031cbb68757068 137 Pfam PF04134 Protein of unknown function, DUF393 8 116 1.2E-20 T 23-04-2016 IPR007263 Protein of unknown function DUF393 NIDE_RS00855 9c52c564cbbb9c7fed031cbb68757068 137 PANTHER PTHR34290 4 117 4.2E-28 T 23-04-2016 NIDE_RS13995 ef6fee6f028e6d8ca35be46ec6117b23 458 PANTHER PTHR42307 1 448 1.1E-177 T 23-04-2016 NIDE_RS13995 ef6fee6f028e6d8ca35be46ec6117b23 458 PANTHER PTHR42307:SF1 1 448 1.1E-177 T 23-04-2016 NIDE_RS13995 ef6fee6f028e6d8ca35be46ec6117b23 458 Pfam PF03136 Pup-ligase protein 43 421 7.0E-152 T 23-04-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 NIDE_RS13995 ef6fee6f028e6d8ca35be46ec6117b23 458 TIGRFAM TIGR03686 pupylate_PafA: Pup--protein ligase 3 450 1.4E-171 T 23-04-2016 IPR022279 Pup--protein ligase GO:0010498|GO:0016879|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 NIDE_RS05030 15471447df9f5f6eb0590f08487cbb8e 225 Gene3D G3DSA:3.40.50.300 2 222 1.3E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05030 15471447df9f5f6eb0590f08487cbb8e 225 SUPERFAMILY SSF52540 1 222 6.84E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05030 15471447df9f5f6eb0590f08487cbb8e 225 SMART SM00382 30 218 5.5E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS05030 15471447df9f5f6eb0590f08487cbb8e 225 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS05030 15471447df9f5f6eb0590f08487cbb8e 225 Pfam PF00005 ABC transporter 21 169 1.3E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS05030 15471447df9f5f6eb0590f08487cbb8e 225 PANTHER PTHR24220 3 220 1.5E-90 T 23-04-2016 NIDE_RS02310 38e02efbe572e3167bdca9d6d2f1f52a 391 PANTHER PTHR11751:SF354 17 388 3.1E-162 T 23-04-2016 NIDE_RS02310 38e02efbe572e3167bdca9d6d2f1f52a 391 PANTHER PTHR11751 17 388 3.1E-162 T 23-04-2016 NIDE_RS02310 38e02efbe572e3167bdca9d6d2f1f52a 391 Hamap MF_01642 LL-diaminopimelate aminotransferase [dapL]. 6 389 45.465 T 23-04-2016 IPR019942 LL-diaminopimelate aminotransferase GO:0009089|GO:0010285 KEGG: 00300+2.6.1.83|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02310 38e02efbe572e3167bdca9d6d2f1f52a 391 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 240 253 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 NIDE_RS02310 38e02efbe572e3167bdca9d6d2f1f52a 391 Pfam PF00155 Aminotransferase class I and II 36 386 1.6E-65 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NIDE_RS02310 38e02efbe572e3167bdca9d6d2f1f52a 391 Gene3D G3DSA:3.40.640.10 50 261 9.4E-62 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS02310 38e02efbe572e3167bdca9d6d2f1f52a 391 TIGRFAM TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase 8 388 9.1E-189 T 23-04-2016 IPR019881 Diaminopimelate aminotransferase, DapL, Desulfovibrio-type GO:0009089|GO:0010285 KEGG: 00300+2.6.1.83|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02310 38e02efbe572e3167bdca9d6d2f1f52a 391 Gene3D G3DSA:3.90.1150.10 262 389 6.5E-40 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS02310 38e02efbe572e3167bdca9d6d2f1f52a 391 SUPERFAMILY SSF53383 9 389 3.76E-114 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS11945 20c64de9d18291fa203f8d69228cc705 114 Gene3D G3DSA:1.10.287.1080 8 95 1.7E-18 T 23-04-2016 NIDE_RS11945 20c64de9d18291fa203f8d69228cc705 114 Pfam PF12643 MazG-like family 32 114 2.7E-21 T 23-04-2016 IPR025984 MazG-like domain KEGG: 00240+3.6.1.12 NIDE_RS11945 20c64de9d18291fa203f8d69228cc705 114 PANTHER PTHR14552 8 114 2.0E-25 T 23-04-2016 NIDE_RS11945 20c64de9d18291fa203f8d69228cc705 114 SUPERFAMILY SSF101386 10 114 2.18E-31 T 23-04-2016 NIDE_RS11945 20c64de9d18291fa203f8d69228cc705 114 PIRSF PIRSF029826 1 114 4.6E-38 T 23-04-2016 IPR011394 NTP Pyrophosphohydrolase MazG-related, RS21-C6 NIDE_RS08705 a26a4f9712e3342fccca73323f4861fd 452 SUPERFAMILY SSF116734 215 411 6.21E-31 T 23-04-2016 NIDE_RS08705 a26a4f9712e3342fccca73323f4861fd 452 PANTHER PTHR30408:SF6 34 409 3.1E-68 T 23-04-2016 NIDE_RS08705 a26a4f9712e3342fccca73323f4861fd 452 Pfam PF01420 Type I restriction modification DNA specificity domain 231 371 1.3E-14 T 23-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 NIDE_RS08705 a26a4f9712e3342fccca73323f4861fd 452 PANTHER PTHR30408 34 409 3.1E-68 T 23-04-2016 NIDE_RS08705 a26a4f9712e3342fccca73323f4861fd 452 SUPERFAMILY SSF116734 7 216 1.96E-32 T 23-04-2016 NIDE_RS12265 cb9a83250b4ad08290917f5a5cc3eec5 340 Pfam PF01497 Periplasmic binding protein 81 300 7.3E-31 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 NIDE_RS12265 cb9a83250b4ad08290917f5a5cc3eec5 340 PANTHER PTHR30535 49 333 1.8E-62 T 23-04-2016 NIDE_RS12265 cb9a83250b4ad08290917f5a5cc3eec5 340 Gene3D G3DSA:3.40.50.1980 78 195 2.7E-29 T 23-04-2016 NIDE_RS12265 cb9a83250b4ad08290917f5a5cc3eec5 340 SUPERFAMILY SSF53807 78 329 5.49E-62 T 23-04-2016 NIDE_RS12265 cb9a83250b4ad08290917f5a5cc3eec5 340 Gene3D G3DSA:3.40.50.1980 198 330 2.6E-34 T 23-04-2016 NIDE_RS15520 18ad8292c12436ce959074d5aa9f968c 333 PIRSF PIRSF000808 1 333 2.9E-93 T 23-04-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 NIDE_RS15520 18ad8292c12436ce959074d5aa9f968c 333 SUPERFAMILY SSF54197 181 331 2.38E-35 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 NIDE_RS15520 18ad8292c12436ce959074d5aa9f968c 333 SUPERFAMILY SSF54197 1 176 8.17E-48 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 NIDE_RS15520 18ad8292c12436ce959074d5aa9f968c 333 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 3 176 3.5E-17 T 23-04-2016 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 NIDE_RS15520 18ad8292c12436ce959074d5aa9f968c 333 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 188 298 8.7E-8 T 23-04-2016 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 NIDE_RS15520 18ad8292c12436ce959074d5aa9f968c 333 Gene3D G3DSA:3.30.428.10 178 331 8.9E-46 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 NIDE_RS15520 18ad8292c12436ce959074d5aa9f968c 333 PANTHER PTHR11943:SF4 1 333 2.1E-156 T 23-04-2016 NIDE_RS15520 18ad8292c12436ce959074d5aa9f968c 333 Gene3D G3DSA:3.30.428.10 40 175 2.4E-50 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 NIDE_RS15520 18ad8292c12436ce959074d5aa9f968c 333 PANTHER PTHR11943 1 333 2.1E-156 T 23-04-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 NIDE_RS15520 18ad8292c12436ce959074d5aa9f968c 333 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 4 306 9.8E-31 T 23-04-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 NIDE_RS03400 f34e3ee42d06276245640e07390875c6 304 SUPERFAMILY SSF53448 4 209 5.13E-34 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS03400 f34e3ee42d06276245640e07390875c6 304 Pfam PF13641 Glycosyltransferase like family 2 6 187 1.2E-14 T 23-04-2016 NIDE_RS03400 f34e3ee42d06276245640e07390875c6 304 PANTHER PTHR22916 1 210 3.9E-20 T 23-04-2016 NIDE_RS03400 f34e3ee42d06276245640e07390875c6 304 Gene3D G3DSA:3.90.550.10 46 186 7.5E-24 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS21155 898f762fc118005e3e0efc7b826fdd95 157 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 59 140 2.7E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS21155 898f762fc118005e3e0efc7b826fdd95 157 Gene3D G3DSA:1.10.760.10 53 143 6.7E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS21155 898f762fc118005e3e0efc7b826fdd95 157 SUPERFAMILY SSF46626 36 145 1.98E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS07455 af6ac46ab92b2dbca9ba2e77f8000cfe 269 SUPERFAMILY SSF161098 10 251 6.28E-51 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS07455 af6ac46ab92b2dbca9ba2e77f8000cfe 269 PANTHER PTHR30406:SF1 1 266 2.9E-94 T 23-04-2016 NIDE_RS07455 af6ac46ab92b2dbca9ba2e77f8000cfe 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 67 250 1.8E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS07455 af6ac46ab92b2dbca9ba2e77f8000cfe 269 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 3 257 5.1E-85 T 23-04-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 NIDE_RS07455 af6ac46ab92b2dbca9ba2e77f8000cfe 269 Gene3D G3DSA:1.10.3720.10 1 259 1.7E-49 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS07455 af6ac46ab92b2dbca9ba2e77f8000cfe 269 PANTHER PTHR30406 1 266 2.9E-94 T 23-04-2016 NIDE_RS10095 9dee970448b3f5775848343bb2f61b00 343 PANTHER PTHR10289 1 343 4.5E-146 T 23-04-2016 NIDE_RS10095 9dee970448b3f5775848343bb2f61b00 343 Gene3D G3DSA:3.40.640.10 1 248 4.4E-83 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS10095 9dee970448b3f5775848343bb2f61b00 343 Gene3D G3DSA:3.90.1150.10 249 341 5.9E-30 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS10095 9dee970448b3f5775848343bb2f61b00 343 PANTHER PTHR10289:SF5 1 343 4.5E-146 T 23-04-2016 NIDE_RS10095 9dee970448b3f5775848343bb2f61b00 343 PIRSF PIRSF017617 1 343 2.8E-130 T 23-04-2016 IPR023603 Threonine aldolase NIDE_RS10095 9dee970448b3f5775848343bb2f61b00 343 Pfam PF01212 Beta-eliminating lyase 3 286 3.6E-93 T 23-04-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 NIDE_RS10095 9dee970448b3f5775848343bb2f61b00 343 SUPERFAMILY SSF53383 2 342 5.98E-116 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS10880 4690368c4b290ccb9828453f5ec92e09 421 PANTHER PTHR26402 326 349 4.3E-37 T 23-04-2016 NIDE_RS10880 4690368c4b290ccb9828453f5ec92e09 421 PANTHER PTHR26402 22 154 4.3E-37 T 23-04-2016 NIDE_RS10880 4690368c4b290ccb9828453f5ec92e09 421 Pfam PF00072 Response regulator receiver domain 24 135 2.8E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10880 4690368c4b290ccb9828453f5ec92e09 421 SMART SM00331 191 410 4.0E-20 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS10880 4690368c4b290ccb9828453f5ec92e09 421 SUPERFAMILY SSF81606 209 357 4.45E-6 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS10880 4690368c4b290ccb9828453f5ec92e09 421 Gene3D G3DSA:3.40.50.2300 21 169 1.3E-36 T 23-04-2016 NIDE_RS10880 4690368c4b290ccb9828453f5ec92e09 421 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 219 410 4.0E-33 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS10880 4690368c4b290ccb9828453f5ec92e09 421 SMART SM00448 22 135 2.0E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10880 4690368c4b290ccb9828453f5ec92e09 421 SUPERFAMILY SSF52172 19 155 3.56E-37 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10500 f63087216cb85159d050ab208c221b9c 407 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 6 388 7.4E-96 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G NIDE_RS10500 f63087216cb85159d050ab208c221b9c 407 PANTHER PTHR30435 284 407 6.2E-93 T 23-04-2016 NIDE_RS10500 f63087216cb85159d050ab208c221b9c 407 PANTHER PTHR30435 2 129 6.2E-93 T 23-04-2016 NIDE_RS10500 f63087216cb85159d050ab208c221b9c 407 SUPERFAMILY SSF117143 85 367 2.22E-77 T 23-04-2016 NIDE_RS10500 f63087216cb85159d050ab208c221b9c 407 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 328 405 6.8E-22 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain NIDE_RS10500 f63087216cb85159d050ab208c221b9c 407 Pfam PF07559 Flagellar basal body protein FlaE 181 287 1.7E-24 T 23-04-2016 IPR011491 Flagellar hook protein FlgE NIDE_RS10500 f63087216cb85159d050ab208c221b9c 407 Pfam PF00460 Flagella basal body rod protein 9 37 1.2E-5 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NIDE_RS10500 f63087216cb85159d050ab208c221b9c 407 PANTHER PTHR30435:SF1 284 407 6.2E-93 T 23-04-2016 NIDE_RS10500 f63087216cb85159d050ab208c221b9c 407 PANTHER PTHR30435:SF1 2 129 6.2E-93 T 23-04-2016 NIDE_RS15130 a627c4fc46339dba92b40bb09b6d4ed5 302 Gene3D G3DSA:2.60.40.1120 215 271 1.2E-6 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain NIDE_RS15130 a627c4fc46339dba92b40bb09b6d4ed5 302 SUPERFAMILY SSF49452 209 262 1.14E-9 T 23-04-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 SMART SM01340 209 327 1.9E-43 T 23-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 124 1.1E-10 T 23-04-2016 NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 SUPERFAMILY SSF54211 190 327 5.31E-33 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 Gene3D G3DSA:3.30.230.10 216 326 1.9E-33 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 Gene3D G3DSA:3.30.565.10 3 213 2.4E-69 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 Pfam PF08676 MutL C terminal dimerisation domain 408 549 9.5E-44 T 23-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 211 326 3.3E-33 T 23-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 SUPERFAMILY SSF118116 407 592 2.48E-47 T 23-04-2016 NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 2 590 25.256 T 23-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 PANTHER PTHR10073 4 575 2.6E-142 T 23-04-2016 NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 - T 23-04-2016 IPR014762 DNA mismatch repair, conserved site NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 SUPERFAMILY SSF55874 3 214 5.02E-50 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 3 307 2.9E-93 T 23-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 NIDE_RS15345 773ca781557653dcec21ead7d12a856a 593 SMART SM00853 407 550 1.2E-46 T 23-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 NIDE_RS02845 2725b4e822e4bb84d904770d17b77766 123 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 26 122 3.2E-38 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 NIDE_RS02845 2725b4e822e4bb84d904770d17b77766 123 PANTHER PTHR11058 1 123 3.6E-49 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 NIDE_RS02845 2725b4e822e4bb84d904770d17b77766 123 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 6 123 20.26 T 23-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 NIDE_RS02845 2725b4e822e4bb84d904770d17b77766 123 PANTHER PTHR11058:SF5 1 123 3.6E-49 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615 898 937 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615 955 973 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615 488 855 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615 12 140 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615 219 403 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615 164 184 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615:SF167 898 937 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615:SF167 955 973 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615:SF167 488 855 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615:SF167 12 140 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615:SF167 219 403 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 PANTHER PTHR11615:SF167 164 184 1.0E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 Gene3D G3DSA:2.40.40.20 899 1109 4.2E-14 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 Pfam PF00384 Molybdopterin oxidoreductase 264 744 9.2E-26 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 SUPERFAMILY SSF53706 266 737 5.3E-80 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 SUPERFAMILY SSF53706 33 227 5.3E-80 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 5 24 2.7E-5 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 SUPERFAMILY SSF50692 883 975 2.06E-8 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 Gene3D G3DSA:3.40.228.10 286 395 4.8E-44 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 Gene3D G3DSA:3.40.228.10 485 561 4.8E-44 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 Gene3D G3DSA:3.40.50.740 648 760 3.2E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 Gene3D G3DSA:3.40.50.740 562 603 3.2E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 Gene3D G3DSA:3.40.50.740 134 240 3.2E-21 T 23-04-2016 NIDE_RS14875 3360d59f2e4c6e3dd0435fd6aecd8c07 1147 Gene3D G3DSA:2.20.25.90 72 133 7.2E-8 T 23-04-2016 NIDE_RS08620 103f15b58d9c71aed6de3a3d55270ad2 269 Pfam PF04199 Putative cyclase 39 210 4.0E-37 T 23-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 NIDE_RS08620 103f15b58d9c71aed6de3a3d55270ad2 269 SUPERFAMILY SSF102198 36 268 3.92E-57 T 23-04-2016 NIDE_RS08620 103f15b58d9c71aed6de3a3d55270ad2 269 PANTHER PTHR31118 19 269 3.7E-85 T 23-04-2016 NIDE_RS08620 103f15b58d9c71aed6de3a3d55270ad2 269 Gene3D G3DSA:3.50.30.50 36 268 4.0E-65 T 23-04-2016 NIDE_RS08620 103f15b58d9c71aed6de3a3d55270ad2 269 PANTHER PTHR31118:SF9 19 269 3.7E-85 T 23-04-2016 NIDE_RS02710 7d494710f10f30edf46294cb0b5013c9 441 SUPERFAMILY SSF53901 7 256 1.31E-65 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS02710 7d494710f10f30edf46294cb0b5013c9 441 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 7 251 5.8E-44 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal NIDE_RS02710 7d494710f10f30edf46294cb0b5013c9 441 SUPERFAMILY SSF53901 223 416 2.8E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS02710 7d494710f10f30edf46294cb0b5013c9 441 SMART SM00825 Beta-ketoacyl synthase 9 407 8.9E-15 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NIDE_RS02710 7d494710f10f30edf46294cb0b5013c9 441 Gene3D G3DSA:3.40.47.10 268 417 6.0E-47 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS02710 7d494710f10f30edf46294cb0b5013c9 441 Gene3D G3DSA:3.40.47.10 4 264 2.4E-64 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS02710 7d494710f10f30edf46294cb0b5013c9 441 PANTHER PTHR11712 1 439 2.3E-132 T 23-04-2016 NIDE_RS02710 7d494710f10f30edf46294cb0b5013c9 441 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 259 373 1.2E-29 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal NIDE_RS17785 4ed5d5fbe3757424631a2c8a2e0b2032 424 PANTHER PTHR12526 26 422 9.4E-87 T 23-04-2016 NIDE_RS17785 4ed5d5fbe3757424631a2c8a2e0b2032 424 Gene3D G3DSA:3.40.50.2000 199 397 2.8E-16 T 23-04-2016 NIDE_RS17785 4ed5d5fbe3757424631a2c8a2e0b2032 424 SUPERFAMILY SSF53756 49 419 2.2E-42 T 23-04-2016 NIDE_RS17785 4ed5d5fbe3757424631a2c8a2e0b2032 424 Pfam PF00534 Glycosyl transferases group 1 230 398 4.3E-20 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS17785 4ed5d5fbe3757424631a2c8a2e0b2032 424 PANTHER PTHR12526:SF220 26 422 9.4E-87 T 23-04-2016 NIDE_RS08430 7883dc4645bb0f2845187fd86370ade7 78 SUPERFAMILY SSF46785 10 69 2.99E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS10045 8933e14dd9c02987df18513eab51acde 185 Gene3D G3DSA:3.30.910.20 107 179 2.9E-21 T 23-04-2016 NIDE_RS10045 8933e14dd9c02987df18513eab51acde 185 Gene3D G3DSA:3.30.910.20 23 69 2.9E-21 T 23-04-2016 NIDE_RS10045 8933e14dd9c02987df18513eab51acde 185 SMART SM00935 21 181 2.1E-30 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 NIDE_RS10045 8933e14dd9c02987df18513eab51acde 185 Pfam PF03938 Outer membrane protein (OmpH-like) 19 179 1.7E-29 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 NIDE_RS10045 8933e14dd9c02987df18513eab51acde 185 SUPERFAMILY SSF111384 32 181 8.76E-26 T 23-04-2016 IPR024930 Skp domain NIDE_RS10045 8933e14dd9c02987df18513eab51acde 185 PANTHER PTHR35089 10 185 6.7E-28 T 23-04-2016 NIDE_RS08130 b9a4a3e7c323518377995b60f2d75da1 1116 PANTHER PTHR38344 710 1091 4.1E-243 T 23-04-2016 NIDE_RS08130 b9a4a3e7c323518377995b60f2d75da1 1116 PANTHER PTHR38344 374 626 4.1E-243 T 23-04-2016 NIDE_RS08130 b9a4a3e7c323518377995b60f2d75da1 1116 PANTHER PTHR38344 9 323 4.1E-243 T 23-04-2016 NIDE_RS08130 b9a4a3e7c323518377995b60f2d75da1 1116 Hamap MF_01871 UPF0753 protein . 15 1063 24.062 T 23-04-2016 IPR018752 Uncharacterised protein family UPF0753 NIDE_RS08130 b9a4a3e7c323518377995b60f2d75da1 1116 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 20 1048 5.5E-287 T 23-04-2016 IPR018752 Uncharacterised protein family UPF0753 NIDE_RS08130 b9a4a3e7c323518377995b60f2d75da1 1116 PANTHER PTHR38344:SF1 710 1091 4.1E-243 T 23-04-2016 NIDE_RS08130 b9a4a3e7c323518377995b60f2d75da1 1116 PANTHER PTHR38344:SF1 374 626 4.1E-243 T 23-04-2016 NIDE_RS08130 b9a4a3e7c323518377995b60f2d75da1 1116 PANTHER PTHR38344:SF1 9 323 4.1E-243 T 23-04-2016 NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 PANTHER PTHR10055:SF6 5 329 3.7E-164 T 23-04-2016 NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 197 207 9.6E-27 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 147 168 9.6E-27 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 69 88 9.6E-27 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 18 34 9.6E-27 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 Gene3D G3DSA:3.40.50.620 5 206 1.3E-87 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 PANTHER PTHR10055 5 329 3.7E-164 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 Gene3D G3DSA:1.10.240.10 207 296 4.8E-33 T 23-04-2016 NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 Pfam PF00579 tRNA synthetases class I (W and Y) 4 284 2.5E-67 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 SUPERFAMILY SSF52374 7 328 1.56E-91 T 23-04-2016 NIDE_RS15405 2f463008466a3051b070d645ab2c30d5 329 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 5 327 1.6E-89 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 NIDE_RS20445 0805e0730368ac202e32f4e477c4e86a 117 Gene3D G3DSA:2.60.40.10 31 100 1.1E-11 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS20445 0805e0730368ac202e32f4e477c4e86a 117 Pfam PF16561 Glycogen recognition site of AMP-activated protein kinase 42 116 2.7E-11 T 23-04-2016 IPR032640 AMP-activated protein kinase, glycogen-binding domain NIDE_RS20445 0805e0730368ac202e32f4e477c4e86a 117 SUPERFAMILY SSF81296 34 116 4.2E-21 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 Gene3D G3DSA:3.30.930.10 2 182 7.1E-90 T 23-04-2016 NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 Gene3D G3DSA:3.30.930.10 218 315 7.1E-90 T 23-04-2016 NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 Pfam PF13393 Histidyl-tRNA synthetase 7 309 2.4E-48 T 23-04-2016 NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 413 30.863 T 23-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 PANTHER PTHR11476 1 418 8.4E-192 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 Gene3D G3DSA:3.40.50.800 324 413 1.5E-22 T 23-04-2016 IPR004154 Anticodon-binding NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 Pfam PF03129 Anticodon binding domain 325 412 4.8E-12 T 23-04-2016 IPR004154 Anticodon-binding NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 PIRSF PIRSF001549 1 415 2.2E-112 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 SUPERFAMILY SSF52954 323 415 1.33E-19 T 23-04-2016 IPR004154 Anticodon-binding NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 SUPERFAMILY SSF55681 1 314 1.67E-95 T 23-04-2016 NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 PANTHER PTHR11476:SF9 1 418 8.4E-192 T 23-04-2016 NIDE_RS20050 b1b9b3078cc2c12e3454c8795327b5c2 418 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 4 403 3.9E-141 T 23-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 Gene3D G3DSA:3.30.70.1430 49 148 4.5E-21 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 SUPERFAMILY SSF82693 48 142 7.85E-21 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 SUPERFAMILY SSF82866 326 526 6.02E-41 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 Gene3D G3DSA:3.30.70.1430 600 708 1.5E-9 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 SUPERFAMILY SSF82693 595 709 4.18E-11 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 SUPERFAMILY SSF82714 760 844 6.93E-11 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 SUPERFAMILY SSF82714 189 271 6.41E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PANTHER PTHR32063 315 899 0.0 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PANTHER PTHR32063 916 1078 0.0 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 Gene3D G3DSA:1.10.3850.10 850 1078 7.5E-69 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 SUPERFAMILY SSF82693 142 188 1.34E-9 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 SUPERFAMILY SSF82693 304 359 1.34E-9 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PANTHER PTHR32063:SF16 10 285 0.0 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PANTHER PTHR32063:SF16 315 899 0.0 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 Gene3D G3DSA:1.20.1640.10 321 529 4.9E-46 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PRINTS PR00702 Acriflavin resistance protein family signature 393 414 2.5E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PRINTS PR00702 Acriflavin resistance protein family signature 46 64 2.5E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PRINTS PR00702 Acriflavin resistance protein family signature 421 445 2.5E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PRINTS PR00702 Acriflavin resistance protein family signature 500 523 2.5E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PRINTS PR00702 Acriflavin resistance protein family signature 475 498 2.5E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PANTHER PTHR32063 10 285 0.0 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 Pfam PF00873 AcrB/AcrD/AcrF family 306 1078 1.1E-118 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 Pfam PF00873 AcrB/AcrD/AcrF family 23 281 2.8E-44 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 SUPERFAMILY SSF82866 844 1078 8.5E-41 T 23-04-2016 NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 Gene3D G3DSA:3.30.2090.10 189 271 7.1E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 Gene3D G3DSA:3.30.2090.10 760 844 1.3E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS17845 01d627679f788f4d0fc48c32e0cce2cb 1078 PANTHER PTHR32063:SF16 916 1078 0.0 T 23-04-2016 NIDE_RS20975 4f62065c25cfd7ca4c7c8e69f17101a8 495 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 224 492 2.2E-23 T 23-04-2016 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal NIDE_RS20975 4f62065c25cfd7ca4c7c8e69f17101a8 495 PANTHER PTHR41373 189 492 3.7E-30 T 23-04-2016 NIDE_RS20975 4f62065c25cfd7ca4c7c8e69f17101a8 495 SUPERFAMILY SSF55729 198 328 3.28E-10 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS20975 4f62065c25cfd7ca4c7c8e69f17101a8 495 Gene3D G3DSA:3.40.630.30 323 487 1.4E-33 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS20975 4f62065c25cfd7ca4c7c8e69f17101a8 495 Gene3D G3DSA:3.40.630.30 222 322 7.8E-9 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS20975 4f62065c25cfd7ca4c7c8e69f17101a8 495 SUPERFAMILY SSF55729 329 493 2.07E-25 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS20975 4f62065c25cfd7ca4c7c8e69f17101a8 495 Pfam PF03692 Putative zinc- or iron-chelating domain 24 117 2.7E-7 T 23-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein NIDE_RS18745 ecdc20fd89507d9034edab026464ab67 91 SMART SM00411 1 90 7.6E-29 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS18745 ecdc20fd89507d9034edab026464ab67 91 Gene3D G3DSA:4.10.520.10 1 91 1.3E-29 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 NIDE_RS18745 ecdc20fd89507d9034edab026464ab67 91 SUPERFAMILY SSF47729 1 90 3.24E-28 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 NIDE_RS18745 ecdc20fd89507d9034edab026464ab67 91 PANTHER PTHR33175 1 90 1.2E-38 T 23-04-2016 NIDE_RS18745 ecdc20fd89507d9034edab026464ab67 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.6E-28 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS18745 ecdc20fd89507d9034edab026464ab67 91 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 8.7E-13 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS18745 ecdc20fd89507d9034edab026464ab67 91 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 8.7E-13 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS18745 ecdc20fd89507d9034edab026464ab67 91 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 8.7E-13 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS18745 ecdc20fd89507d9034edab026464ab67 91 PANTHER PTHR33175:SF2 1 90 1.2E-38 T 23-04-2016 NIDE_RS18745 ecdc20fd89507d9034edab026464ab67 91 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 23-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 NIDE_RS12040 b37f8fed9fa062fe2f87b8f9899ded09 113 SUPERFAMILY SSF47413 30 99 9.01E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS12040 b37f8fed9fa062fe2f87b8f9899ded09 113 Gene3D G3DSA:1.10.260.40 38 98 7.6E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS12040 b37f8fed9fa062fe2f87b8f9899ded09 113 SMART SM00530 42 97 1.2E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS12040 b37f8fed9fa062fe2f87b8f9899ded09 113 Pfam PF13560 Helix-turn-helix domain 38 97 6.5E-9 T 23-04-2016 NIDE_RS11165 33648df0631709fe33e72284975a94ee 229 Gene3D G3DSA:1.10.10.10 129 228 4.6E-35 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS11165 33648df0631709fe33e72284975a94ee 229 Gene3D G3DSA:3.40.50.2300 4 128 5.4E-7 T 23-04-2016 NIDE_RS11165 33648df0631709fe33e72284975a94ee 229 PANTHER PTHR26402:SF578 6 229 5.3E-43 T 23-04-2016 NIDE_RS11165 33648df0631709fe33e72284975a94ee 229 SUPERFAMILY SSF46894 127 226 9.48E-31 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS11165 33648df0631709fe33e72284975a94ee 229 SMART SM00862 150 226 6.3E-27 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS11165 33648df0631709fe33e72284975a94ee 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 226 8.8E-26 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS11165 33648df0631709fe33e72284975a94ee 229 PANTHER PTHR26402 6 229 5.3E-43 T 23-04-2016 NIDE_RS11165 33648df0631709fe33e72284975a94ee 229 SUPERFAMILY SSF52172 8 124 3.08E-10 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 PIRSF PIRSF000106 41 433 3.6E-75 T 23-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 Pfam PF03949 Malic enzyme, NAD binding domain 173 390 9.9E-16 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 PANTHER PTHR23406:SF23 38 444 4.4E-143 T 23-04-2016 NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 SMART SM00919 172 402 3.7E-80 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 Gene3D G3DSA:3.40.50.720 170 427 9.4E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 PANTHER PTHR23406 38 444 4.4E-143 T 23-04-2016 NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 SMART SM01274 27 160 8.1E-77 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 SUPERFAMILY SSF51735 172 431 6.7E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 SUPERFAMILY SSF53223 18 170 7.91E-55 T 23-04-2016 NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 Pfam PF00390 Malic enzyme, N-terminal domain 28 159 7.7E-27 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 NIDE_RS17530 1ada807928f91d1c66abf06967a19382 448 Gene3D G3DSA:3.40.50.10380 14 169 1.5E-54 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 PIRSF PIRSF000441 1 214 1.7E-85 T 23-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 Gene3D G3DSA:1.10.3130.10 1 59 1.6E-27 T 23-04-2016 NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 Gene3D G3DSA:2.160.10.10 60 210 1.8E-42 T 23-04-2016 NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 0.0012 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 117 151 1.0E-9 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 126 154 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 5 166 4.6E-75 T 23-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 PANTHER PTHR23416:SF55 1 210 9.0E-105 T 23-04-2016 NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 SUPERFAMILY SSF51161 4 170 1.11E-59 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 Pfam PF06426 Serine acetyltransferase, N-terminal 3 35 2.7E-7 T 23-04-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 NIDE_RS13610 f0ab4851117ffb568e899fddb3739e78 216 PANTHER PTHR23416 1 210 9.0E-105 T 23-04-2016 NIDE_RS08945 79705c40e59fff1924518f7d8699992d 325 Gene3D G3DSA:2.60.200.20 211 308 2.0E-10 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 NIDE_RS08945 79705c40e59fff1924518f7d8699992d 325 Gene3D G3DSA:3.30.70.1230 33 198 2.7E-20 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 NIDE_RS08945 79705c40e59fff1924518f7d8699992d 325 SUPERFAMILY SSF49879 209 308 4.56E-14 T 23-04-2016 IPR008984 SMAD/FHA domain GO:0005515 NIDE_RS08945 79705c40e59fff1924518f7d8699992d 325 SUPERFAMILY SSF55073 30 202 3.01E-31 T 23-04-2016 IPR029787 Nucleotide cyclase NIDE_RS08945 79705c40e59fff1924518f7d8699992d 325 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 33 192 2.9E-12 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 NIDE_RS08945 79705c40e59fff1924518f7d8699992d 325 SMART SM00044 12 176 5.1E-4 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 NIDE_RS08945 79705c40e59fff1924518f7d8699992d 325 Pfam PF00498 FHA domain 224 299 1.1E-6 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 NIDE_RS04200 bd62448ee38221a0895560fb379ceffa 88 SUPERFAMILY SSF46689 1 71 2.33E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS04200 bd62448ee38221a0895560fb379ceffa 88 Pfam PF01527 Transposase 2 71 6.7E-19 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 NIDE_RS04200 bd62448ee38221a0895560fb379ceffa 88 PANTHER PTHR33609 2 88 1.1E-31 T 23-04-2016 NIDE_RS04200 bd62448ee38221a0895560fb379ceffa 88 Gene3D G3DSA:1.10.10.60 7 85 2.9E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS14300 47ef55b31f5c1aa5685b09fa3a8e3b8f 135 Pfam PF02310 B12 binding domain 9 105 4.1E-18 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS14300 47ef55b31f5c1aa5685b09fa3a8e3b8f 135 Gene3D G3DSA:3.40.50.280 6 130 2.8E-48 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS14300 47ef55b31f5c1aa5685b09fa3a8e3b8f 135 SUPERFAMILY SSF52242 6 128 1.16E-43 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS14300 47ef55b31f5c1aa5685b09fa3a8e3b8f 135 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 8 129 1.9E-43 T 23-04-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 NIDE_RS14300 47ef55b31f5c1aa5685b09fa3a8e3b8f 135 PANTHER PTHR23408 1 113 4.9E-54 T 23-04-2016 NIDE_RS14300 47ef55b31f5c1aa5685b09fa3a8e3b8f 135 PANTHER PTHR23408:SF8 1 113 4.9E-54 T 23-04-2016 NIDE_RS07655 24df97241c22b1d692cb1030b0577949 410 SUPERFAMILY SSF53448 37 404 2.19E-69 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 SUPERFAMILY SSF63380 4 106 1.42E-22 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 Gene3D G3DSA:2.40.30.10 4 100 1.7E-20 T 23-04-2016 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 Gene3D G3DSA:3.40.50.80 107 233 2.5E-37 T 23-04-2016 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 Pfam PF00970 Oxidoreductase FAD-binding domain 6 103 3.7E-15 T 23-04-2016 IPR008333 Oxidoreductase, FAD-binding domain NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PANTHER PTHR19370 6 225 2.0E-56 T 23-04-2016 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 Pfam PF00175 Oxidoreductase NAD-binding domain 114 216 3.2E-23 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PRINTS PR00410 Phenol hydroxylase reductase family signature 33 45 8.3E-18 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PRINTS PR00410 Phenol hydroxylase reductase family signature 97 106 8.3E-18 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PRINTS PR00410 Phenol hydroxylase reductase family signature 203 211 8.3E-18 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PRINTS PR00410 Phenol hydroxylase reductase family signature 113 132 8.3E-18 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PRINTS PR00410 Phenol hydroxylase reductase family signature 138 147 8.3E-18 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 203 211 5.7E-10 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 113 132 5.7E-10 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 150 161 5.7E-10 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 54 61 5.7E-10 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 138 147 5.7E-10 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 NIDE_RS03310 4218ed3c78fed15d9263e2364bd57d0d 235 SUPERFAMILY SSF52343 95 224 3.67E-36 T 23-04-2016 NIDE_RS00895 9f96e6b498a23c0b1f705c513608242d 312 Pfam PF08338 Domain of unknown function (DUF1731) 252 298 6.5E-15 T 23-04-2016 IPR013549 Domain of unknown function DUF1731 NIDE_RS00895 9f96e6b498a23c0b1f705c513608242d 312 PANTHER PTHR11092 1 304 1.1E-120 T 23-04-2016 IPR010099 Epimerase family protein SDR39U1 NIDE_RS00895 9f96e6b498a23c0b1f705c513608242d 312 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 216 4.9E-15 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 NIDE_RS00895 9f96e6b498a23c0b1f705c513608242d 312 PANTHER PTHR11092:SF0 1 304 1.1E-120 T 23-04-2016 NIDE_RS00895 9f96e6b498a23c0b1f705c513608242d 312 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 6 295 7.4E-96 T 23-04-2016 IPR010099 Epimerase family protein SDR39U1 NIDE_RS00895 9f96e6b498a23c0b1f705c513608242d 312 SUPERFAMILY SSF51735 1 300 8.32E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS00895 9f96e6b498a23c0b1f705c513608242d 312 Gene3D G3DSA:3.40.50.720 6 238 4.3E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS18435 ac2ca4d5eff47b8cedda1bf0f4e2ecb1 185 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 169 5.0E-57 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 NIDE_RS18435 ac2ca4d5eff47b8cedda1bf0f4e2ecb1 185 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 173 2.3E-71 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 NIDE_RS18435 ac2ca4d5eff47b8cedda1bf0f4e2ecb1 185 PANTHER PTHR21047 8 185 9.4E-70 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 NIDE_RS18435 ac2ca4d5eff47b8cedda1bf0f4e2ecb1 185 Gene3D G3DSA:2.60.120.10 1 177 1.6E-79 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS18435 ac2ca4d5eff47b8cedda1bf0f4e2ecb1 185 SUPERFAMILY SSF51182 1 177 2.67E-76 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS18435 ac2ca4d5eff47b8cedda1bf0f4e2ecb1 185 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 175 3.5E-72 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 NIDE_RS05230 a72e41974034bed531fce4501ffc6271 661 TIGRFAM TIGR01561 gde_arch: putative glycogen debranching enzyme, archaeal type 18 583 1.1E-123 T 23-04-2016 IPR006451 Glycogen debranching enzyme, archaeal type NIDE_RS05230 a72e41974034bed531fce4501ffc6271 661 Pfam PF06202 Amylo-alpha-1,6-glucosidase 286 643 3.1E-127 T 23-04-2016 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25+3.2.1.33|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NIDE_RS05230 a72e41974034bed531fce4501ffc6271 661 Gene3D G3DSA:1.50.10.10 296 647 3.0E-5 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 NIDE_RS05230 a72e41974034bed531fce4501ffc6271 661 PANTHER PTHR10569 277 659 5.3E-115 T 23-04-2016 IPR010401 Glycogen debranching enzyme GO:0004134|GO:0004135|GO:0005980 KEGG: 00500+3.2.1.33+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NIDE_RS05230 a72e41974034bed531fce4501ffc6271 661 SUPERFAMILY SSF48208 184 649 1.9E-81 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS05230 a72e41974034bed531fce4501ffc6271 661 Pfam PF12439 Glycogen debranching enzyme N terminal 18 232 2.2E-69 T 23-04-2016 IPR024742 Glycogen debranching enzyme, bacterial and archaeal type, N-terminal NIDE_RS11360 237b3bda9a794c1a7b831511d4d61943 277 PRINTS PR00075 Fatty acid desaturase family 1 signature 98 127 1.6E-29 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS11360 237b3bda9a794c1a7b831511d4d61943 277 PRINTS PR00075 Fatty acid desaturase family 1 signature 187 208 1.6E-29 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS11360 237b3bda9a794c1a7b831511d4d61943 277 PRINTS PR00075 Fatty acid desaturase family 1 signature 11 31 1.6E-29 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS11360 237b3bda9a794c1a7b831511d4d61943 277 PRINTS PR00075 Fatty acid desaturase family 1 signature 230 244 1.6E-29 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS11360 237b3bda9a794c1a7b831511d4d61943 277 PRINTS PR00075 Fatty acid desaturase family 1 signature 61 81 1.6E-29 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS11360 237b3bda9a794c1a7b831511d4d61943 277 Pfam PF00487 Fatty acid desaturase 42 253 1.4E-19 T 23-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 NIDE_RS11360 237b3bda9a794c1a7b831511d4d61943 277 PANTHER PTHR11351 11 274 1.4E-91 T 23-04-2016 NIDE_RS14815 25dcf98d20d30edf6a0d3f89a4f61911 293 PANTHER PTHR30520 1 254 3.2E-54 T 23-04-2016 NIDE_RS14815 25dcf98d20d30edf6a0d3f89a4f61911 293 Pfam PF01226 Formate/nitrite transporter 9 257 2.7E-61 T 23-04-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 NIDE_RS14815 25dcf98d20d30edf6a0d3f89a4f61911 293 Gene3D G3DSA:1.20.1080.10 24 261 3.8E-63 T 23-04-2016 IPR023271 Aquaporin-like NIDE_RS14625 38440785731d059ba08abd769dfbd710 426 SUPERFAMILY SSF103473 22 417 5.62E-38 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS14625 38440785731d059ba08abd769dfbd710 426 Pfam PF05977 Transmembrane secretion effector 19 414 2.9E-32 T 23-04-2016 IPR010290 Transmembrane secretion effector NIDE_RS14625 38440785731d059ba08abd769dfbd710 426 PRINTS PR01988 Putative bacilysin exporter bacE signature 26 48 7.6E-6 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS14625 38440785731d059ba08abd769dfbd710 426 PRINTS PR01988 Putative bacilysin exporter bacE signature 182 199 7.6E-6 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS14625 38440785731d059ba08abd769dfbd710 426 PRINTS PR01988 Putative bacilysin exporter bacE signature 155 176 7.6E-6 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS14625 38440785731d059ba08abd769dfbd710 426 PRINTS PR01988 Putative bacilysin exporter bacE signature 89 107 7.6E-6 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS14625 38440785731d059ba08abd769dfbd710 426 PRINTS PR01988 Putative bacilysin exporter bacE signature 232 254 7.6E-6 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS14625 38440785731d059ba08abd769dfbd710 426 PANTHER PTHR23513 4 417 1.8E-72 T 23-04-2016 NIDE_RS14625 38440785731d059ba08abd769dfbd710 426 Gene3D G3DSA:1.20.1250.20 234 414 5.2E-16 T 23-04-2016 NIDE_RS14625 38440785731d059ba08abd769dfbd710 426 Gene3D G3DSA:1.20.1250.20 24 204 4.0E-13 T 23-04-2016 NIDE_RS15280 ef0c633afa27fffd1c55529838e34591 314 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 20 270 18.204 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS15280 ef0c633afa27fffd1c55529838e34591 314 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 27 256 8.9E-54 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS15280 ef0c633afa27fffd1c55529838e34591 314 PANTHER PTHR30371:SF0 1 277 2.6E-74 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS15280 ef0c633afa27fffd1c55529838e34591 314 Pfam PF00902 Sec-independent protein translocase protein (TatC) 28 251 3.0E-60 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS15280 ef0c633afa27fffd1c55529838e34591 314 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 131 157 8.9E-36 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS15280 ef0c633afa27fffd1c55529838e34591 314 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 25 52 8.9E-36 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS15280 ef0c633afa27fffd1c55529838e34591 314 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 183 211 8.9E-36 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS15280 ef0c633afa27fffd1c55529838e34591 314 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 113 131 8.9E-36 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS15280 ef0c633afa27fffd1c55529838e34591 314 PANTHER PTHR30371 1 277 2.6E-74 T 23-04-2016 NIDE_RS03925 8616caf9efbb1eb35a89f7665ee1d66f 330 Gene3D G3DSA:3.40.47.10 2 161 2.1E-52 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS03925 8616caf9efbb1eb35a89f7665ee1d66f 330 Gene3D G3DSA:3.40.47.10 162 330 2.3E-45 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS03925 8616caf9efbb1eb35a89f7665ee1d66f 330 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 241 330 2.8E-31 T 23-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 NIDE_RS03925 8616caf9efbb1eb35a89f7665ee1d66f 330 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 189 4.4E-25 T 23-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 NIDE_RS03925 8616caf9efbb1eb35a89f7665ee1d66f 330 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 3 330 6.5E-100 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 NIDE_RS03925 8616caf9efbb1eb35a89f7665ee1d66f 330 PANTHER PTHR34069:SF2 1 330 6.5E-108 T 23-04-2016 NIDE_RS03925 8616caf9efbb1eb35a89f7665ee1d66f 330 PANTHER PTHR34069 1 330 6.5E-108 T 23-04-2016 NIDE_RS03925 8616caf9efbb1eb35a89f7665ee1d66f 330 SUPERFAMILY SSF53901 3 330 2.28E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS03925 8616caf9efbb1eb35a89f7665ee1d66f 330 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 330 56.324 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 NIDE_RS02465 9f35676f7bcbbdfeea7fc8b16daf086a 402 Gene3D G3DSA:3.30.70.1380 247 331 2.3E-26 T 23-04-2016 NIDE_RS02465 9f35676f7bcbbdfeea7fc8b16daf086a 402 Gene3D G3DSA:3.10.20.300 332 396 1.7E-15 T 23-04-2016 NIDE_RS02465 9f35676f7bcbbdfeea7fc8b16daf086a 402 PANTHER PTHR36566 3 399 1.3E-94 T 23-04-2016 NIDE_RS02465 9f35676f7bcbbdfeea7fc8b16daf086a 402 Hamap MF_01074 UPF0272 protein . 2 390 37.498 T 23-04-2016 IPR002822 Uncharacterised protein family UPF0272 NIDE_RS02465 9f35676f7bcbbdfeea7fc8b16daf086a 402 TIGRFAM TIGR00299 TIGR00299: TIGR00299 family protein 7 380 2.8E-101 T 23-04-2016 IPR002822 Uncharacterised protein family UPF0272 NIDE_RS02465 9f35676f7bcbbdfeea7fc8b16daf086a 402 Pfam PF01969 Protein of unknown function DUF111 5 380 1.5E-129 T 23-04-2016 IPR002822 Uncharacterised protein family UPF0272 NIDE_RS02465 9f35676f7bcbbdfeea7fc8b16daf086a 402 PANTHER PTHR36566:SF1 3 399 1.3E-94 T 23-04-2016 NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 PANTHER PTHR24089:SF272 1 122 2.2E-15 T 23-04-2016 NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 3 50 2.4E-19 T 23-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 Gene3D G3DSA:1.20.5.710 1 49 1.6E-22 T 23-04-2016 NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 125 4.5E-46 T 23-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 125 24.665 T 23-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 58 125 7.1E-29 T 23-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 59 125 2.0E-17 T 23-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 Gene3D G3DSA:3.30.1390.10 53 125 2.7E-32 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 SUPERFAMILY SSF48300 2 60 1.57E-14 T 23-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 SUPERFAMILY SSF54736 53 125 2.44E-23 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like NIDE_RS06030 150d67599c49a59b3ea6445dba87557a 125 PANTHER PTHR24089 1 122 2.2E-15 T 23-04-2016 NIDE_RS13420 1c8153027029127e5ac6c550ec0bee2f 315 SUPERFAMILY SSF52540 2 189 3.84E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13420 1c8153027029127e5ac6c550ec0bee2f 315 PANTHER PTHR13748 3 315 2.0E-47 T 23-04-2016 NIDE_RS13420 1c8153027029127e5ac6c550ec0bee2f 315 Gene3D G3DSA:3.40.50.300 2 194 5.5E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13420 1c8153027029127e5ac6c550ec0bee2f 315 SMART SM00833 229 313 4.8E-6 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal NIDE_RS13420 1c8153027029127e5ac6c550ec0bee2f 315 SUPERFAMILY SSF90002 229 313 3.79E-9 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal NIDE_RS13420 1c8153027029127e5ac6c550ec0bee2f 315 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 229 313 7.3E-12 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal NIDE_RS13420 1c8153027029127e5ac6c550ec0bee2f 315 Gene3D G3DSA:3.30.1220.10 214 314 1.2E-8 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal NIDE_RS13420 1c8153027029127e5ac6c550ec0bee2f 315 PANTHER PTHR13748:SF10 3 315 2.0E-47 T 23-04-2016 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 UniPathway: UPA00148 NIDE_RS13420 1c8153027029127e5ac6c550ec0bee2f 315 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 178 3.4E-32 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain NIDE_RS05250 671d367d233f21bd92b1b44cceb7889e 183 SUPERFAMILY SSF143744 39 173 4.97E-35 T 23-04-2016 NIDE_RS05250 671d367d233f21bd92b1b44cceb7889e 183 PANTHER PTHR34309 14 180 1.3E-35 T 23-04-2016 NIDE_RS05250 671d367d233f21bd92b1b44cceb7889e 183 PANTHER PTHR34309:SF1 14 180 1.3E-35 T 23-04-2016 NIDE_RS05250 671d367d233f21bd92b1b44cceb7889e 183 Pfam PF03928 Haem-degrading 46 170 1.4E-27 T 23-04-2016 IPR005624 Haem-degrading NIDE_RS00215 d8b45b62bb0325c10f237a6950e653fa 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 69 187 7.5E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS00215 d8b45b62bb0325c10f237a6950e653fa 232 Gene3D G3DSA:3.40.50.1000 81 224 5.9E-40 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS00215 d8b45b62bb0325c10f237a6950e653fa 232 SUPERFAMILY SSF56784 11 222 2.17E-50 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS00215 d8b45b62bb0325c10f237a6950e653fa 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 185 2.8E-24 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS00215 d8b45b62bb0325c10f237a6950e653fa 232 Gene3D G3DSA:1.10.150.240 27 80 6.0E-5 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 NIDE_RS00215 d8b45b62bb0325c10f237a6950e653fa 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 107 185 7.7E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS00215 d8b45b62bb0325c10f237a6950e653fa 232 PANTHER PTHR18901 11 222 1.4E-50 T 23-04-2016 NIDE_RS14265 3495800b51e0269f0d8e7d4ba4ab473e 333 SUPERFAMILY SSF52518 11 325 4.47E-91 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS14265 3495800b51e0269f0d8e7d4ba4ab473e 333 PANTHER PTHR11516:SF39 6 326 3.8E-120 T 23-04-2016 NIDE_RS14265 3495800b51e0269f0d8e7d4ba4ab473e 333 Gene3D G3DSA:3.40.50.970 8 326 8.7E-113 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS14265 3495800b51e0269f0d8e7d4ba4ab473e 333 PANTHER PTHR11516 6 326 3.8E-120 T 23-04-2016 NIDE_RS14265 3495800b51e0269f0d8e7d4ba4ab473e 333 Pfam PF00676 Dehydrogenase E1 component 23 315 2.8E-73 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 NIDE_RS13760 f2f1232aab5785969a97117e21d978c8 371 Gene3D G3DSA:3.40.50.720 1 134 3.6E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13760 f2f1232aab5785969a97117e21d978c8 371 Gene3D G3DSA:3.30.360.10 135 347 2.6E-32 T 23-04-2016 NIDE_RS13760 f2f1232aab5785969a97117e21d978c8 371 SUPERFAMILY SSF55347 132 281 1.64E-25 T 23-04-2016 NIDE_RS13760 f2f1232aab5785969a97117e21d978c8 371 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 203 4.1E-12 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 NIDE_RS13760 f2f1232aab5785969a97117e21d978c8 371 PANTHER PTHR22604 1 364 4.1E-74 T 23-04-2016 NIDE_RS13760 f2f1232aab5785969a97117e21d978c8 371 SUPERFAMILY SSF51735 3 154 1.28E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13760 f2f1232aab5785969a97117e21d978c8 371 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 123 2.0E-26 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 NIDE_RS01240 7c07b74267d28358e7826f2b57bebc3d 369 Pfam PF04338 Protein of unknown function, DUF481 146 363 5.0E-39 T 23-04-2016 IPR007433 Protein of unknown function DUF481 NIDE_RS06450 bf8bfdd918237d4a282c56dd05ebeea5 240 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 226 1.9E-94 T 23-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS06450 bf8bfdd918237d4a282c56dd05ebeea5 240 PANTHER PTHR10099 1 231 3.5E-111 T 23-04-2016 NIDE_RS06450 bf8bfdd918237d4a282c56dd05ebeea5 240 Gene3D G3DSA:3.40.50.880 1 213 2.7E-38 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS06450 bf8bfdd918237d4a282c56dd05ebeea5 240 SUPERFAMILY SSF52317 1 226 6.81E-76 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS06450 bf8bfdd918237d4a282c56dd05ebeea5 240 SMART SM01211 1 228 1.9E-133 T 23-04-2016 NIDE_RS06450 bf8bfdd918237d4a282c56dd05ebeea5 240 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 212 3.5E-44 T 23-04-2016 NIDE_RS06450 bf8bfdd918237d4a282c56dd05ebeea5 240 PIRSF PIRSF001586 1 230 1.9E-86 T 23-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS06450 bf8bfdd918237d4a282c56dd05ebeea5 240 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 226 44.849 T 23-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS18205 f6cfe3ea9fab131c9ef772be7a9c4221 311 Gene3D G3DSA:1.10.3300.10 223 289 9.7E-6 T 23-04-2016 IPR023286 ABATE domain NIDE_RS18205 f6cfe3ea9fab131c9ef772be7a9c4221 311 Pfam PF11706 CGNR zinc finger 241 288 1.7E-5 T 23-04-2016 IPR021005 Zinc finger, CGNR NIDE_RS18205 f6cfe3ea9fab131c9ef772be7a9c4221 311 SUPERFAMILY SSF160904 211 288 5.62E-8 T 23-04-2016 NIDE_RS09790 e7c9a229faefd1463ded3c4ffb56c19a 101 PANTHER PTHR36924 1 87 2.8E-18 T 23-04-2016 NIDE_RS09790 e7c9a229faefd1463ded3c4ffb56c19a 101 Pfam PF01381 Helix-turn-helix 19 65 5.4E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS09790 e7c9a229faefd1463ded3c4ffb56c19a 101 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 4 87 6.2E-29 T 23-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 NIDE_RS09790 e7c9a229faefd1463ded3c4ffb56c19a 101 Gene3D G3DSA:1.10.260.40 3 87 2.4E-33 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS09790 e7c9a229faefd1463ded3c4ffb56c19a 101 PANTHER PTHR36924:SF2 1 87 2.8E-18 T 23-04-2016 NIDE_RS09790 e7c9a229faefd1463ded3c4ffb56c19a 101 SMART SM00530 13 69 5.5E-4 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS09790 e7c9a229faefd1463ded3c4ffb56c19a 101 SUPERFAMILY SSF47413 9 87 4.59E-20 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS06930 65c5fa4bea1d0bd4bb671397e9837dae 312 PANTHER PTHR30606 10 312 2.8E-102 T 23-04-2016 NIDE_RS06930 65c5fa4bea1d0bd4bb671397e9837dae 312 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 9 310 41.92 T 23-04-2016 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24|UniPathway: UPA00030 NIDE_RS06930 65c5fa4bea1d0bd4bb671397e9837dae 312 PANTHER PTHR30606:SF5 10 312 2.8E-102 T 23-04-2016 NIDE_RS06930 65c5fa4bea1d0bd4bb671397e9837dae 312 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 14 300 1.8E-70 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 NIDE_RS06930 65c5fa4bea1d0bd4bb671397e9837dae 312 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 16 310 4.6E-93 T 23-04-2016 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24|UniPathway: UPA00030 NIDE_RS06930 65c5fa4bea1d0bd4bb671397e9837dae 312 PIRSF PIRSF026649 7 310 5.1E-90 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 NIDE_RS10715 3bcbd04651078e361309c5018b2d0b1f 558 Gene3D G3DSA:3.40.50.2000 182 358 2.0E-36 T 23-04-2016 NIDE_RS10715 3bcbd04651078e361309c5018b2d0b1f 558 PANTHER PTHR30160 1 368 3.3E-49 T 23-04-2016 NIDE_RS10715 3bcbd04651078e361309c5018b2d0b1f 558 SUPERFAMILY SSF53756 3 358 1.88E-58 T 23-04-2016 NIDE_RS10715 3bcbd04651078e361309c5018b2d0b1f 558 PANTHER PTHR30160:SF11 1 368 3.3E-49 T 23-04-2016 NIDE_RS10715 3bcbd04651078e361309c5018b2d0b1f 558 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 92 330 1.0E-14 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 NIDE_RS10715 3bcbd04651078e361309c5018b2d0b1f 558 Gene3D G3DSA:3.40.50.2000 4 145 2.7E-16 T 23-04-2016 NIDE_RS19895 1cd9403d8b3b36f6f9acf003f1d86ddf 176 PANTHER PTHR31223 4 157 2.6E-30 T 23-04-2016 NIDE_RS19895 1cd9403d8b3b36f6f9acf003f1d86ddf 176 PANTHER PTHR31223:SF22 4 157 2.6E-30 T 23-04-2016 NIDE_RS19895 1cd9403d8b3b36f6f9acf003f1d86ddf 176 Gene3D G3DSA:3.40.50.450 4 156 1.8E-24 T 23-04-2016 NIDE_RS19895 1cd9403d8b3b36f6f9acf003f1d86ddf 176 SUPERFAMILY SSF102405 2 157 1.83E-26 T 23-04-2016 NIDE_RS06330 3b9f39b2110edeb2acae39e199d330c2 73 SUPERFAMILY SSF46785 8 67 3.29E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS06330 3b9f39b2110edeb2acae39e199d330c2 73 Gene3D G3DSA:1.10.10.10 8 63 1.3E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16130 a3633ffb85dd1348d703ee616522f5ef 256 Pfam PF10670 Domain of unknown function (DUF4198) 12 223 2.0E-16 T 23-04-2016 IPR019613 Protein of unknown function DUF4198 NIDE_RS16130 a3633ffb85dd1348d703ee616522f5ef 256 SUPERFAMILY SSF49478 177 224 7.06E-5 T 23-04-2016 NIDE_RS12850 22e141aaff32ef6240923a5f38823e18 148 Gene3D G3DSA:3.30.530.20 2 144 3.0E-40 T 23-04-2016 IPR023393 START-like domain NIDE_RS12850 22e141aaff32ef6240923a5f38823e18 148 PANTHER PTHR36929:SF1 4 148 5.1E-24 T 23-04-2016 NIDE_RS12850 22e141aaff32ef6240923a5f38823e18 148 SUPERFAMILY SSF55961 1 144 8.8E-42 T 23-04-2016 NIDE_RS12850 22e141aaff32ef6240923a5f38823e18 148 PANTHER PTHR36929 4 148 5.1E-24 T 23-04-2016 NIDE_RS12850 22e141aaff32ef6240923a5f38823e18 148 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 14 143 2.6E-26 T 23-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 NIDE_RS05095 8f9dd9bca0ea9c0cb300fc3774076926 90 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 72 6.9E-26 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NIDE_RS05095 8f9dd9bca0ea9c0cb300fc3774076926 90 PRINTS PR01651 Protein-export SecG membrane protein signature 37 53 5.2E-20 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NIDE_RS05095 8f9dd9bca0ea9c0cb300fc3774076926 90 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 5.2E-20 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NIDE_RS05095 8f9dd9bca0ea9c0cb300fc3774076926 90 PRINTS PR01651 Protein-export SecG membrane protein signature 53 75 5.2E-20 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NIDE_RS05095 8f9dd9bca0ea9c0cb300fc3774076926 90 Pfam PF03840 Preprotein translocase SecG subunit 4 72 6.2E-23 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 NIDE_RS05095 8f9dd9bca0ea9c0cb300fc3774076926 90 PANTHER PTHR34182 2 77 9.1E-24 T 23-04-2016 NIDE_RS19675 fbe7c6d01d954debf3bffb5ce12afcda 160 PANTHER PTHR10739:SF26 9 158 3.1E-41 T 23-04-2016 NIDE_RS19675 fbe7c6d01d954debf3bffb5ce12afcda 160 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 16 156 3.3E-58 T 23-04-2016 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 NIDE_RS19675 fbe7c6d01d954debf3bffb5ce12afcda 160 Gene3D G3DSA:3.40.50.620 23 145 2.1E-34 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS19675 fbe7c6d01d954debf3bffb5ce12afcda 160 SUPERFAMILY SSF52374 24 155 1.61E-25 T 23-04-2016 NIDE_RS19675 fbe7c6d01d954debf3bffb5ce12afcda 160 Pfam PF01467 Cytidylyltransferase-like 28 121 1.1E-15 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NIDE_RS19675 fbe7c6d01d954debf3bffb5ce12afcda 160 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 25 91 5.9E-15 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NIDE_RS19675 fbe7c6d01d954debf3bffb5ce12afcda 160 PANTHER PTHR10739 9 158 3.1E-41 T 23-04-2016 NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PANTHER PTHR11206 88 100 7.2E-60 T 23-04-2016 NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PANTHER PTHR11206 235 485 7.2E-60 T 23-04-2016 NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 Pfam PF03023 MviN-like protein 46 483 1.3E-120 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 20 525 1.2E-125 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PRINTS PR01806 Virulence factor MviN signature 51 70 4.7E-64 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PRINTS PR01806 Virulence factor MviN signature 151 175 4.7E-64 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PRINTS PR01806 Virulence factor MviN signature 175 196 4.7E-64 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PRINTS PR01806 Virulence factor MviN signature 70 86 4.7E-64 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PRINTS PR01806 Virulence factor MviN signature 426 443 4.7E-64 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PRINTS PR01806 Virulence factor MviN signature 276 302 4.7E-64 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PRINTS PR01806 Virulence factor MviN signature 374 393 4.7E-64 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PANTHER PTHR11206:SF90 88 100 7.2E-60 T 23-04-2016 NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PANTHER PTHR11206:SF90 235 485 7.2E-60 T 23-04-2016 NIDE_RS19735 001e57085dfebfb5e11a88c51deb4f73 542 PIRSF PIRSF002869 16 530 3.6E-152 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS17780 7b2b1d36134b6024877919b7c13aa4ee 573 TIGRFAM TIGR02094 more_P_ylases: alpha-glucan phosphorylases 10 564 2.9E-167 T 23-04-2016 IPR011834 Alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 NIDE_RS17780 7b2b1d36134b6024877919b7c13aa4ee 573 Pfam PF00343 Carbohydrate phosphorylase 245 482 1.4E-18 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 NIDE_RS17780 7b2b1d36134b6024877919b7c13aa4ee 573 Pfam PF00343 Carbohydrate phosphorylase 28 102 1.1E-6 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 NIDE_RS17780 7b2b1d36134b6024877919b7c13aa4ee 573 PANTHER PTHR11468:SF9 9 521 7.6E-207 T 23-04-2016 NIDE_RS17780 7b2b1d36134b6024877919b7c13aa4ee 573 Gene3D G3DSA:3.40.50.2000 302 564 1.8E-72 T 23-04-2016 NIDE_RS17780 7b2b1d36134b6024877919b7c13aa4ee 573 SUPERFAMILY SSF53756 4 565 3.77E-154 T 23-04-2016 NIDE_RS17780 7b2b1d36134b6024877919b7c13aa4ee 573 PANTHER PTHR11468 9 521 7.6E-207 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 NIDE_RS17780 7b2b1d36134b6024877919b7c13aa4ee 573 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 456 468 - T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 NIDE_RS17780 7b2b1d36134b6024877919b7c13aa4ee 573 Gene3D G3DSA:3.40.50.2000 25 301 7.5E-52 T 23-04-2016 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 Pfam PF16658 Class II release factor RF3, C-terminal domain 393 520 1.4E-38 T 23-04-2016 IPR032090 Peptide chain release factor 3, C-terminal NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 PANTHER PTHR23115 257 474 9.7E-220 T 23-04-2016 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 PANTHER PTHR23115 3 191 9.7E-220 T 23-04-2016 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 Pfam PF00009 Elongation factor Tu GTP binding domain 20 283 3.1E-50 T 23-04-2016 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 12 491 3.0E-200 T 23-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 PRINTS PR00315 GTP-binding elongation factor signature 72 80 2.2E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 PRINTS PR00315 GTP-binding elongation factor signature 108 119 2.2E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 PRINTS PR00315 GTP-binding elongation factor signature 144 153 2.2E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 PRINTS PR00315 GTP-binding elongation factor signature 22 35 2.2E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 PRINTS PR00315 GTP-binding elongation factor signature 92 102 2.2E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 SUPERFAMILY SSF50447 267 399 8.43E-28 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 Gene3D G3DSA:3.40.50.300 17 288 1.5E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 Gene3D G3DSA:2.40.30.10 298 401 1.7E-23 T 23-04-2016 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 24 161 1.8E-23 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 PANTHER PTHR23115:SF69 257 474 9.7E-220 T 23-04-2016 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 PANTHER PTHR23115:SF69 3 191 9.7E-220 T 23-04-2016 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 65 80 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 SUPERFAMILY SSF52540 19 283 2.73E-85 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 SUPERFAMILY SSF54980 399 472 6.12E-13 T 23-04-2016 IPR009022 Elongation factor G, III-V domain NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 11 534 49.146 T 23-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 NIDE_RS16625 c8c15f1836713a7af88e9d933b6ede75 542 Gene3D G3DSA:3.30.70.870 402 472 1.1E-9 T 23-04-2016 NIDE_RS12110 c9d9666b45144b78b1f5e69848df2a14 72 PIRSF PIRSF002599 1 72 5.2E-24 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 NIDE_RS12110 c9d9666b45144b78b1f5e69848df2a14 72 PANTHER PTHR11544 4 64 2.1E-34 T 23-04-2016 NIDE_RS12110 c9d9666b45144b78b1f5e69848df2a14 72 Gene3D G3DSA:2.40.50.140 3 64 7.7E-31 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS12110 c9d9666b45144b78b1f5e69848df2a14 72 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 4.0E-30 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NIDE_RS12110 c9d9666b45144b78b1f5e69848df2a14 72 SUPERFAMILY SSF50249 2 65 1.14E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS12110 c9d9666b45144b78b1f5e69848df2a14 72 SMART SM00357 4 67 2.8E-27 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 NIDE_RS12110 c9d9666b45144b78b1f5e69848df2a14 72 PRINTS PR00050 Cold shock protein signature 5 20 3.1E-19 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NIDE_RS12110 c9d9666b45144b78b1f5e69848df2a14 72 PRINTS PR00050 Cold shock protein signature 40 58 3.1E-19 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NIDE_RS12110 c9d9666b45144b78b1f5e69848df2a14 72 PRINTS PR00050 Cold shock protein signature 25 34 3.1E-19 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 NIDE_RS12110 c9d9666b45144b78b1f5e69848df2a14 72 ProSitePatterns PS00352 'Cold-shock' domain signature. 16 34 - T 23-04-2016 IPR019844 Cold-shock conserved site NIDE_RS07920 db28301c5684d785946b5948a8d3820f 245 PANTHER PTHR30027:SF3 1 245 1.1E-55 T 23-04-2016 NIDE_RS07920 db28301c5684d785946b5948a8d3820f 245 SUPERFAMILY SSF75217 72 244 1.67E-45 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases NIDE_RS07920 db28301c5684d785946b5948a8d3820f 245 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 6 243 1.7E-50 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS07920 db28301c5684d785946b5948a8d3820f 245 PIRSF PIRSF015601 1 244 1.8E-56 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS07920 db28301c5684d785946b5948a8d3820f 245 Gene3D G3DSA:3.40.1280.10 1 244 2.8E-67 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIDE_RS07920 db28301c5684d785946b5948a8d3820f 245 Pfam PF04452 RNA methyltransferase 17 238 3.8E-59 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS07920 db28301c5684d785946b5948a8d3820f 245 SUPERFAMILY SSF88697 1 68 1.14E-9 T 23-04-2016 IPR015947 PUA-like domain NIDE_RS07920 db28301c5684d785946b5948a8d3820f 245 PANTHER PTHR30027 1 245 1.1E-55 T 23-04-2016 NIDE_RS10625 9a6c6c2cf0c4ebf616cfc23ca3154118 81 SUPERFAMILY SSF117130 1 55 7.19E-19 T 23-04-2016 NIDE_RS10625 9a6c6c2cf0c4ebf616cfc23ca3154118 81 PANTHER PTHR34984 1 59 1.0E-22 T 23-04-2016 NIDE_RS10625 9a6c6c2cf0c4ebf616cfc23ca3154118 81 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 57 5.0E-23 T 23-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 NIDE_RS10625 9a6c6c2cf0c4ebf616cfc23ca3154118 81 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 6.0E-12 T 23-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 NIDE_RS10625 9a6c6c2cf0c4ebf616cfc23ca3154118 81 Hamap MF_00167 Carbon storage regulator [csrA]. 1 70 19.95 T 23-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 NIDE_RS10625 9a6c6c2cf0c4ebf616cfc23ca3154118 81 PANTHER PTHR34984:SF1 1 59 1.0E-22 T 23-04-2016 NIDE_RS10625 9a6c6c2cf0c4ebf616cfc23ca3154118 81 Pfam PF02599 Global regulator protein family 1 53 6.0E-23 T 23-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 Gene3D G3DSA:1.20.1250.20 20 205 3.7E-15 T 23-04-2016 NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 Gene3D G3DSA:1.20.1250.20 230 409 1.3E-15 T 23-04-2016 NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 PANTHER PTHR23513:SF11 2 415 1.1E-77 T 23-04-2016 NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 153 174 1.1E-5 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 24 46 1.1E-5 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 180 197 1.1E-5 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 87 105 1.1E-5 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 315 338 1.1E-5 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 Pfam PF05977 Transmembrane secretion effector 17 409 1.2E-30 T 23-04-2016 IPR010290 Transmembrane secretion effector NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 PANTHER PTHR23513 2 415 1.1E-77 T 23-04-2016 NIDE_RS07770 0e9d0d67180b71fe61a186b338250b31 420 SUPERFAMILY SSF103473 20 417 7.59E-45 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 157 163 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 PANTHER PTHR33841 155 293 1.1E-18 T 23-04-2016 NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 PANTHER PTHR33841:SF1 155 293 1.1E-18 T 23-04-2016 NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 Pfam PF12950 TaqI-like C-terminal specificity domain 420 520 8.3E-10 T 23-04-2016 IPR025931 TaqI-like C-terminal specificity domain NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 Pfam PF07669 Eco57I restriction-modification methylase 154 264 5.9E-10 T 23-04-2016 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 SUPERFAMILY SSF53335 35 296 2.17E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 154 166 4.295201E-13 T 23-04-2016 NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 36 52 4.295201E-13 T 23-04-2016 NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 65 79 4.295201E-13 T 23-04-2016 NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 189 213 4.295201E-13 T 23-04-2016 NIDE_RS16765 defde6915f0f6d62ce524899b728a150 569 Gene3D G3DSA:3.40.50.150 38 273 1.4E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS11065 456fcc70aa4766da53b1de094655a831 165 Gene3D G3DSA:3.40.50.1240 4 160 9.6E-27 T 23-04-2016 IPR029033 Histidine phosphatase superfamily NIDE_RS11065 456fcc70aa4766da53b1de094655a831 165 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 71 7.3E-7 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 NIDE_RS11065 456fcc70aa4766da53b1de094655a831 165 SUPERFAMILY SSF53254 4 142 3.53E-16 T 23-04-2016 IPR029033 Histidine phosphatase superfamily NIDE_RS04040 221d96a6c7a7131bb836276ec41d07f9 361 SUPERFAMILY SSF52266 241 348 1.22E-10 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS04040 221d96a6c7a7131bb836276ec41d07f9 361 SUPERFAMILY SSF52266 81 158 1.22E-10 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS04040 221d96a6c7a7131bb836276ec41d07f9 361 Gene3D G3DSA:3.40.50.1110 82 155 9.1E-9 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS04040 221d96a6c7a7131bb836276ec41d07f9 361 Gene3D G3DSA:3.40.50.1110 238 349 9.1E-9 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS13000 bd125f809efbc76ee060bb4e337bf3fa 354 Pfam PF01757 Acyltransferase family 11 329 2.9E-20 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 NIDE_RS19010 4c9161835775a1adc3c77fb84abf97ea 141 Pfam PF13686 DsrE/DsrF/DrsH-like family 1 140 1.7E-46 T 23-04-2016 IPR032836 DsrE/DsrF/DrsH-like family NIDE_RS19010 4c9161835775a1adc3c77fb84abf97ea 141 Gene3D G3DSA:3.40.1260.10 1 141 2.3E-44 T 23-04-2016 IPR027396 DsrEFH-like NIDE_RS19010 4c9161835775a1adc3c77fb84abf97ea 141 PANTHER PTHR34655 1 141 1.6E-43 T 23-04-2016 NIDE_RS19010 4c9161835775a1adc3c77fb84abf97ea 141 SUPERFAMILY SSF75169 2 32 5.18E-19 T 23-04-2016 IPR027396 DsrEFH-like NIDE_RS19010 4c9161835775a1adc3c77fb84abf97ea 141 SUPERFAMILY SSF75169 82 139 5.18E-19 T 23-04-2016 IPR027396 DsrEFH-like NIDE_RS19010 4c9161835775a1adc3c77fb84abf97ea 141 PANTHER PTHR34655:SF2 1 141 1.6E-43 T 23-04-2016 NIDE_RS11510 99f00c0a5ff7fac2c27090782d848d3a 84 Pfam PF07690 Major Facilitator Superfamily 15 80 2.2E-10 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS11510 99f00c0a5ff7fac2c27090782d848d3a 84 Gene3D G3DSA:1.20.1250.20 9 75 1.0E-12 T 23-04-2016 NIDE_RS11510 99f00c0a5ff7fac2c27090782d848d3a 84 SUPERFAMILY SSF103473 7 76 4.97E-13 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS18505 c7b535164bf0e6e7f7b8dfa77772ba5c 518 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 264 271 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 NIDE_RS18505 c7b535164bf0e6e7f7b8dfa77772ba5c 518 Gene3D G3DSA:3.40.605.10 28 279 5.9E-69 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS18505 c7b535164bf0e6e7f7b8dfa77772ba5c 518 Pfam PF00171 Aldehyde dehydrogenase family 30 489 5.1E-127 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS18505 c7b535164bf0e6e7f7b8dfa77772ba5c 518 Gene3D G3DSA:3.40.309.10 280 455 2.1E-53 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 NIDE_RS18505 c7b535164bf0e6e7f7b8dfa77772ba5c 518 PANTHER PTHR11699 1 518 3.2E-273 T 23-04-2016 NIDE_RS18505 c7b535164bf0e6e7f7b8dfa77772ba5c 518 PANTHER PTHR11699:SF144 1 518 3.2E-273 T 23-04-2016 NIDE_RS18505 c7b535164bf0e6e7f7b8dfa77772ba5c 518 SUPERFAMILY SSF53720 25 494 3.8E-129 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 NIDE_RS17890 5f7d16448b16a328cfbce3244abacef9 415 SUPERFAMILY SSF51905 116 251 1.79E-5 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS17890 5f7d16448b16a328cfbce3244abacef9 415 SUPERFAMILY SSF51905 2 151 7.07E-25 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS17890 5f7d16448b16a328cfbce3244abacef9 415 Gene3D G3DSA:3.50.50.60 2 116 1.1E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS17890 5f7d16448b16a328cfbce3244abacef9 415 Gene3D G3DSA:3.50.50.60 253 330 1.1E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS17890 5f7d16448b16a328cfbce3244abacef9 415 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 298 3.5E-15 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS17890 5f7d16448b16a328cfbce3244abacef9 415 PANTHER PTHR10632:SF7 1 413 2.1E-152 T 23-04-2016 NIDE_RS17890 5f7d16448b16a328cfbce3244abacef9 415 PANTHER PTHR10632 1 413 2.1E-152 T 23-04-2016 NIDE_RS11835 1125acd5e9e9155e6745624a880d6b8d 285 Gene3D G3DSA:1.25.40.10 61 226 3.5E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11835 1125acd5e9e9155e6745624a880d6b8d 285 SUPERFAMILY SSF48452 46 182 6.96E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS05260 3868a6bb4879fa4f8f4153ee355996e3 299 Gene3D G3DSA:3.40.50.720 6 170 1.1E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS05260 3868a6bb4879fa4f8f4153ee355996e3 299 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 172 291 6.9E-20 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 NIDE_RS05260 3868a6bb4879fa4f8f4153ee355996e3 299 Gene3D G3DSA:1.10.1040.10 172 292 4.4E-26 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NIDE_RS05260 3868a6bb4879fa4f8f4153ee355996e3 299 PIRSF PIRSF000103 1 299 3.8E-61 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 NIDE_RS05260 3868a6bb4879fa4f8f4153ee355996e3 299 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 7 169 1.5E-28 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 NIDE_RS05260 3868a6bb4879fa4f8f4153ee355996e3 299 SUPERFAMILY SSF48179 170 291 8.39E-27 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS05260 3868a6bb4879fa4f8f4153ee355996e3 299 PANTHER PTHR22981 4 291 1.7E-59 T 23-04-2016 NIDE_RS05260 3868a6bb4879fa4f8f4153ee355996e3 299 SUPERFAMILY SSF51735 6 170 1.9E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19940 0e47d0894c6bea9fd7181bfdaadd019f 118 PRINTS PR00605 Class IC cytochrome C signature 45 56 2.6E-6 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 NIDE_RS19940 0e47d0894c6bea9fd7181bfdaadd019f 118 PRINTS PR00605 Class IC cytochrome C signature 91 113 2.6E-6 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 NIDE_RS19940 0e47d0894c6bea9fd7181bfdaadd019f 118 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 36 113 3.5E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS19940 0e47d0894c6bea9fd7181bfdaadd019f 118 Gene3D G3DSA:1.10.760.10 25 117 9.0E-22 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS19940 0e47d0894c6bea9fd7181bfdaadd019f 118 SUPERFAMILY SSF46626 13 117 2.47E-25 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 SUPERFAMILY SSF55785 105 209 2.62E-12 T 23-04-2016 IPR000014 PAS domain NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 Gene3D G3DSA:3.30.450.20 100 216 1.2E-16 T 23-04-2016 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 Pfam PF08448 PAS fold 111 217 1.3E-9 T 23-04-2016 IPR013656 PAS fold-4 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 452 7.3E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 7.3E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 7.3E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 7.3E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 PANTHER PTHR24423 103 460 8.2E-83 T 23-04-2016 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 PANTHER PTHR24423 1 23 8.2E-83 T 23-04-2016 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 Gene3D G3DSA:1.10.287.130 227 299 9.2E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 SMART SM00388 233 303 9.1E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 453 2.2E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 108 223 1.5E-7 T 23-04-2016 IPR000014 PAS domain NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 SMART SM00091 105 173 8.3E-5 T 23-04-2016 IPR000014 PAS domain NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 SMART SM00387 345 455 3.5E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 SUPERFAMILY SSF47384 223 301 9.22E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 301 4.0E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 SUPERFAMILY SSF55874 295 456 6.02E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS19475 a37820afb5323e29dc8fd58ccc6fea22 465 Gene3D G3DSA:3.30.565.10 306 454 4.5E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS14600 e4eaf3f0cbf9d010efb8898e51187a17 145 Pfam PF16798 Domain of unknown function (DUF5069) 5 88 4.2E-14 T 23-04-2016 IPR031849 Domain of unknown function DUF5069 NIDE_RS03590 7e10b596029127135245564190c3c6c3 255 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 5 184 1.2E-44 T 23-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 NIDE_RS03590 7e10b596029127135245564190c3c6c3 255 SUPERFAMILY SSF50715 2 190 6.28E-49 T 23-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 NIDE_RS03590 7e10b596029127135245564190c3c6c3 255 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 3 187 26.824 T 23-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 NIDE_RS03590 7e10b596029127135245564190c3c6c3 255 Pfam PF01386 Ribosomal L25p family 5 95 6.6E-21 T 23-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 NIDE_RS03590 7e10b596029127135245564190c3c6c3 255 Gene3D G3DSA:2.170.120.20 100 191 9.6E-27 T 23-04-2016 IPR020057 Ribosomal protein L25, beta domain NIDE_RS03590 7e10b596029127135245564190c3c6c3 255 Gene3D G3DSA:2.40.240.10 2 98 1.7E-23 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 NIDE_RS03590 7e10b596029127135245564190c3c6c3 255 PANTHER PTHR33284 1 218 2.3E-48 T 23-04-2016 NIDE_RS03590 7e10b596029127135245564190c3c6c3 255 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 103 186 3.1E-26 T 23-04-2016 IPR020057 Ribosomal protein L25, beta domain NIDE_RS03590 7e10b596029127135245564190c3c6c3 255 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 4 95 2.0E-14 T 23-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 NIDE_RS07440 9909a7f23b753c6a3cf51b9b170e497e 333 Gene3D G3DSA:2.115.10.20 61 195 1.2E-8 T 23-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain NIDE_RS07440 9909a7f23b753c6a3cf51b9b170e497e 333 SUPERFAMILY SSF75005 33 316 3.27E-24 T 23-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain NIDE_RS07115 fa5d39bd089057d5f97bbb6e24e6f25c 909 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 295 661 4.9E-56 T 23-04-2016 IPR006474 Helicase Cas3, CRISPR-associated, core NIDE_RS07115 fa5d39bd089057d5f97bbb6e24e6f25c 909 SUPERFAMILY SSF52540 289 343 1.06E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07115 fa5d39bd089057d5f97bbb6e24e6f25c 909 SUPERFAMILY SSF52540 521 659 1.06E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07115 fa5d39bd089057d5f97bbb6e24e6f25c 909 SUPERFAMILY SSF52540 387 480 1.06E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07115 fa5d39bd089057d5f97bbb6e24e6f25c 909 Gene3D G3DSA:3.40.50.300 538 656 2.9E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07115 fa5d39bd089057d5f97bbb6e24e6f25c 909 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 25 222 1.9E-20 T 23-04-2016 IPR006483 CRISPR-associated Cas3-HD domain NIDE_RS07115 fa5d39bd089057d5f97bbb6e24e6f25c 909 Gene3D G3DSA:3.40.50.300 291 375 6.7E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07115 fa5d39bd089057d5f97bbb6e24e6f25c 909 Gene3D G3DSA:3.40.50.300 409 479 6.7E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07115 fa5d39bd089057d5f97bbb6e24e6f25c 909 SMART SM00487 265 520 0.0068 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS14710 6b0dea1b33476011d8f8f9e7c5d3fc7d 186 Pfam PF02622 Uncharacterized ACR, COG1678 15 166 3.6E-45 T 23-04-2016 IPR003774 Protein of unknown function UPF0301 NIDE_RS14710 6b0dea1b33476011d8f8f9e7c5d3fc7d 186 SUPERFAMILY SSF143456 6 170 1.13E-52 T 23-04-2016 NIDE_RS14710 6b0dea1b33476011d8f8f9e7c5d3fc7d 186 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 4 183 27.457 T 23-04-2016 IPR003774 Protein of unknown function UPF0301 NIDE_RS14710 6b0dea1b33476011d8f8f9e7c5d3fc7d 186 PANTHER PTHR30327:SF1 7 186 1.0E-48 T 23-04-2016 NIDE_RS14710 6b0dea1b33476011d8f8f9e7c5d3fc7d 186 Gene3D G3DSA:3.30.70.1300 64 126 3.8E-8 T 23-04-2016 NIDE_RS14710 6b0dea1b33476011d8f8f9e7c5d3fc7d 186 PANTHER PTHR30327 7 186 1.0E-48 T 23-04-2016 NIDE_RS14710 6b0dea1b33476011d8f8f9e7c5d3fc7d 186 Gene3D G3DSA:3.40.1740.10 127 168 1.2E-28 T 23-04-2016 NIDE_RS14710 6b0dea1b33476011d8f8f9e7c5d3fc7d 186 Gene3D G3DSA:3.40.1740.10 6 43 1.2E-28 T 23-04-2016 NIDE_RS01920 d3109ceaafba7eaeaee347e05fb2cdd5 251 SUPERFAMILY SSF75625 3 245 1.09E-85 T 23-04-2016 IPR029072 YebC-like NIDE_RS01920 d3109ceaafba7eaeaee347e05fb2cdd5 251 PANTHER PTHR12532 1 240 1.0E-99 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like NIDE_RS01920 d3109ceaafba7eaeaee347e05fb2cdd5 251 Gene3D G3DSA:3.30.1270.10 211 246 4.2E-35 T 23-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 NIDE_RS01920 d3109ceaafba7eaeaee347e05fb2cdd5 251 Gene3D G3DSA:3.30.1270.10 81 133 4.2E-35 T 23-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 NIDE_RS01920 d3109ceaafba7eaeaee347e05fb2cdd5 251 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 236 9.8E-89 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like NIDE_RS01920 d3109ceaafba7eaeaee347e05fb2cdd5 251 Gene3D G3DSA:1.10.10.200 1 76 1.6E-29 T 23-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like NIDE_RS01920 d3109ceaafba7eaeaee347e05fb2cdd5 251 Pfam PF01709 Transcriptional regulator 5 236 6.3E-86 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like NIDE_RS01920 d3109ceaafba7eaeaee347e05fb2cdd5 251 Gene3D G3DSA:3.30.70.980 134 204 2.9E-24 T 23-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 NIDE_RS01920 d3109ceaafba7eaeaee347e05fb2cdd5 251 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 33.31 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like NIDE_RS01875 3676c579021d61abcd5353280870b418 150 PANTHER PTHR33221:SF1 2 150 2.7E-39 T 23-04-2016 NIDE_RS01875 3676c579021d61abcd5353280870b418 150 PANTHER PTHR33221 2 150 2.7E-39 T 23-04-2016 NIDE_RS01875 3676c579021d61abcd5353280870b418 150 Gene3D G3DSA:1.10.10.10 1 140 2.8E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS01875 3676c579021d61abcd5353280870b418 150 Pfam PF02082 Transcriptional regulator 1 83 3.9E-24 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type NIDE_RS01875 3676c579021d61abcd5353280870b418 150 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 135 7.2E-33 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type NIDE_RS01875 3676c579021d61abcd5353280870b418 150 SUPERFAMILY SSF46785 3 136 4.14E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS13890 c1cc9e28e435b82629edabf3de416c88 360 PANTHER PTHR30160:SF13 10 314 5.8E-75 T 23-04-2016 NIDE_RS13890 c1cc9e28e435b82629edabf3de416c88 360 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 17 336 3.1E-67 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 NIDE_RS13890 c1cc9e28e435b82629edabf3de416c88 360 Gene3D G3DSA:3.40.50.300 46 109 4.5E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13890 c1cc9e28e435b82629edabf3de416c88 360 Gene3D G3DSA:3.40.50.300 157 174 4.5E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13890 c1cc9e28e435b82629edabf3de416c88 360 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 7 348 28.797 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 NIDE_RS13890 c1cc9e28e435b82629edabf3de416c88 360 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 11 347 2.4E-86 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 NIDE_RS13890 c1cc9e28e435b82629edabf3de416c88 360 SUPERFAMILY SSF52540 44 167 1.54E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13890 c1cc9e28e435b82629edabf3de416c88 360 PANTHER PTHR30160 10 314 5.8E-75 T 23-04-2016 NIDE_RS09975 84b2d7090ed6939a8345d4f4b87ceba5 864 SUPERFAMILY SSF56935 142 864 6.59E-104 T 23-04-2016 NIDE_RS09975 84b2d7090ed6939a8345d4f4b87ceba5 864 PANTHER PTHR32552 747 864 8.3E-47 T 23-04-2016 NIDE_RS09975 84b2d7090ed6939a8345d4f4b87ceba5 864 PANTHER PTHR32552 88 728 8.3E-47 T 23-04-2016 NIDE_RS09975 84b2d7090ed6939a8345d4f4b87ceba5 864 Gene3D G3DSA:2.170.130.10 143 274 9.9E-27 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS09975 84b2d7090ed6939a8345d4f4b87ceba5 864 Pfam PF07660 Secretin and TonB N terminus short domain 67 110 6.0E-7 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 NIDE_RS09975 84b2d7090ed6939a8345d4f4b87ceba5 864 SMART SM00965 60 111 1.1E-9 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 NIDE_RS09975 84b2d7090ed6939a8345d4f4b87ceba5 864 Pfam PF07715 TonB-dependent Receptor Plug Domain 165 271 8.3E-19 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS09975 84b2d7090ed6939a8345d4f4b87ceba5 864 Pfam PF00593 TonB dependent receptor 589 840 1.4E-21 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS09975 84b2d7090ed6939a8345d4f4b87ceba5 864 Gene3D G3DSA:2.40.170.20 275 864 1.7E-85 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS06495 c7b8b12a303d0ca9d6ae73df1bc70002 198 SUPERFAMILY SSF56281 2 196 9.58E-31 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS06495 c7b8b12a303d0ca9d6ae73df1bc70002 198 Pfam PF14597 Metallo-beta-lactamase superfamily 6 191 6.1E-26 T 23-04-2016 NIDE_RS06495 c7b8b12a303d0ca9d6ae73df1bc70002 198 Gene3D G3DSA:3.60.15.10 2 197 2.4E-39 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 SUPERFAMILY SSF53223 18 137 3.74E-38 T 23-04-2016 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 139 296 2.1E-71 T 23-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 Gene3D G3DSA:3.40.50.720 156 279 3.8E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 20 136 8.1E-38 T 23-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 SUPERFAMILY SSF51735 138 295 1.08E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 PANTHER PTHR10025 5 300 1.6E-161 T 23-04-2016 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 Hamap MF_01576 Bifunctional protein FolD [folD]. 18 298 39.163 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 275 283 - T 23-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 254 270 1.4E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 49 71 1.4E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 90 117 1.4E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 125 146 1.4E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 271 289 1.4E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 170 190 1.4E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 219 248 1.4E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 NIDE_RS03720 4e21c0c9c5c89b2659f686143826e220 301 Gene3D G3DSA:3.40.192.10 22 155 4.6E-47 T 23-04-2016 NIDE_RS18870 1667b47c1abaff500dd3260998598864 105 Pfam PF00355 Rieske [2Fe-2S] domain 5 77 1.8E-17 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS18870 1667b47c1abaff500dd3260998598864 105 PANTHER PTHR21496 6 99 5.3E-26 T 23-04-2016 NIDE_RS18870 1667b47c1abaff500dd3260998598864 105 Gene3D G3DSA:2.102.10.10 2 100 2.5E-33 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS18870 1667b47c1abaff500dd3260998598864 105 SUPERFAMILY SSF50022 1 100 1.05E-33 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS10035 cc38eacc1874adaa7c55fe49eb56d157 131 SMART SM00450 27 124 1.0E-20 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS10035 cc38eacc1874adaa7c55fe49eb56d157 131 Gene3D G3DSA:3.40.250.10 16 129 7.3E-31 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS10035 cc38eacc1874adaa7c55fe49eb56d157 131 PANTHER PTHR12231 34 131 3.2E-16 T 23-04-2016 NIDE_RS10035 cc38eacc1874adaa7c55fe49eb56d157 131 SUPERFAMILY SSF52821 8 129 1.57E-33 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS10035 cc38eacc1874adaa7c55fe49eb56d157 131 Pfam PF00581 Rhodanese-like domain 28 120 1.1E-15 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS19555 587699a4663b02eb16171a598a234368 135 SUPERFAMILY SSF140804 17 128 2.35E-31 T 23-04-2016 IPR027405 YidB-like NIDE_RS19555 587699a4663b02eb16171a598a234368 135 Pfam PF06078 Bacterial protein of unknown function (DUF937) 3 114 5.4E-10 T 23-04-2016 IPR009282 Protein of unknown function DUF937 NIDE_RS19555 587699a4663b02eb16171a598a234368 135 Gene3D G3DSA:1.10.10.690 1 134 1.1E-37 T 23-04-2016 IPR027405 YidB-like NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 SUPERFAMILY SSF82693 43 128 5.23E-21 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 SUPERFAMILY SSF82866 302 508 8.11E-39 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 Gene3D G3DSA:3.30.2090.10 193 275 1.1E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 Gene3D G3DSA:3.30.2090.10 722 808 1.8E-23 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 Gene3D G3DSA:3.30.70.1430 42 143 9.2E-26 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 PANTHER PTHR32063:SF24 2 1040 0.0 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 SUPERFAMILY SSF82693 162 192 5.75E-12 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 SUPERFAMILY SSF82693 278 336 5.75E-12 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 SUPERFAMILY SSF82866 806 1029 2.09E-52 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 Pfam PF00873 AcrB/AcrD/AcrF family 6 1028 1.4E-295 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 6.3E-32 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 PRINTS PR00702 Acriflavin resistance protein family signature 398 422 6.3E-32 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 PRINTS PR00702 Acriflavin resistance protein family signature 370 391 6.3E-32 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 6.3E-32 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 PRINTS PR00702 Acriflavin resistance protein family signature 343 366 6.3E-32 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 6.3E-32 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 Gene3D G3DSA:1.10.3850.10 288 508 2.0E-55 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 Gene3D G3DSA:1.10.3850.10 814 1029 5.3E-57 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 PANTHER PTHR32063 2 1040 0.0 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 SUPERFAMILY SSF82693 577 666 1.92E-5 T 23-04-2016 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 SUPERFAMILY SSF82714 723 807 2.35E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1036 0.0 T 23-04-2016 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 NIDE_RS17155 4c5b05b8789fee7b6a681ebc8dbe7410 1042 SUPERFAMILY SSF82714 193 275 9.16E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIDE_RS06135 9b97ddc46d3604252b39facca9c16c6e 131 Gene3D G3DSA:3.30.1490.10 75 131 6.3E-25 T 23-04-2016 NIDE_RS06135 9b97ddc46d3604252b39facca9c16c6e 131 PANTHER PTHR11758 1 131 4.9E-45 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06135 9b97ddc46d3604252b39facca9c16c6e 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 1 131 29.854 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06135 9b97ddc46d3604252b39facca9c16c6e 131 Pfam PF00410 Ribosomal protein S8 4 131 6.0E-44 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06135 9b97ddc46d3604252b39facca9c16c6e 131 PANTHER PTHR11758:SF4 1 131 4.9E-45 T 23-04-2016 NIDE_RS06135 9b97ddc46d3604252b39facca9c16c6e 131 Gene3D G3DSA:3.30.1370.30 1 68 3.0E-20 T 23-04-2016 NIDE_RS06135 9b97ddc46d3604252b39facca9c16c6e 131 SUPERFAMILY SSF56047 1 131 5.36E-41 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 NIDE_RS20775 b5a9784a77be9226cfd9dd9eb2d33536 192 PANTHER PTHR14969 1 175 3.1E-27 T 23-04-2016 NIDE_RS20775 b5a9784a77be9226cfd9dd9eb2d33536 192 Gene3D G3DSA:1.20.144.10 4 179 5.2E-32 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS20775 b5a9784a77be9226cfd9dd9eb2d33536 192 SMART SM00014 55 165 8.9E-20 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS20775 b5a9784a77be9226cfd9dd9eb2d33536 192 SUPERFAMILY SSF48317 3 178 3.4E-37 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS20775 b5a9784a77be9226cfd9dd9eb2d33536 192 Pfam PF01569 PAP2 superfamily 60 170 1.3E-19 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 Gene3D G3DSA:3.30.420.40 212 397 3.1E-67 T 23-04-2016 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 Gene3D G3DSA:3.30.420.40 11 211 5.6E-10 T 23-04-2016 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 Hamap MF_00020 Acetate kinase [ackA]. 1 401 149.743 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 TIGRFAM TIGR00016 ackA: acetate kinase 10 398 6.9E-117 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 PIRSF PIRSF000722 8 402 4.2E-128 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 Pfam PF00871 Acetokinase family 11 392 9.0E-114 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 PRINTS PR00471 Acetate kinase family signature 209 230 2.8E-34 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 PRINTS PR00471 Acetate kinase family signature 379 391 2.8E-34 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 PRINTS PR00471 Acetate kinase family signature 327 343 2.8E-34 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 PRINTS PR00471 Acetate kinase family signature 305 318 2.8E-34 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 PRINTS PR00471 Acetate kinase family signature 11 22 2.8E-34 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 PRINTS PR00471 Acetate kinase family signature 179 192 2.8E-34 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 PANTHER PTHR21060 10 404 1.6E-149 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 PANTHER PTHR21060:SF11 10 404 1.6E-149 T 23-04-2016 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 SUPERFAMILY SSF53067 10 199 2.59E-53 T 23-04-2016 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 11 22 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 209 226 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 NIDE_RS16095 ee586d71b73f612a3a4c0c3498f2a586 404 SUPERFAMILY SSF53067 164 398 1.58E-74 T 23-04-2016 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 Pfam PF00072 Response regulator receiver domain 13 123 3.8E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 SUPERFAMILY SSF47384 142 222 8.44E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 SMART SM00448 10 123 3.6E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 Gene3D G3DSA:3.40.50.2300 13 139 1.2E-38 T 23-04-2016 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 PANTHER PTHR24423 135 300 1.1E-114 T 23-04-2016 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 PANTHER PTHR24423 318 412 1.1E-114 T 23-04-2016 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 SUPERFAMILY SSF55874 210 401 1.96E-47 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 400 2.1E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 381 2.1E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 356 2.1E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 342 2.1E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 SMART SM00387 268 403 2.8E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 Gene3D G3DSA:1.10.287.130 154 217 4.4E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 SUPERFAMILY SSF52172 12 149 7.12E-39 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 SMART SM00388 156 221 3.2E-23 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 268 402 9.5E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 PANTHER PTHR24423:SF491 135 300 1.1E-114 T 23-04-2016 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 PANTHER PTHR24423:SF491 318 412 1.1E-114 T 23-04-2016 NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 Gene3D G3DSA:3.30.565.10 222 405 2.2E-48 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03690 a20b185f51e53b78cad99cbf4f14ac42 415 Pfam PF00512 His Kinase A (phospho-acceptor) domain 157 221 3.2E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS12925 d116364a7a755107c0e7de6988b10d88 132 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 1 128 8.4E-46 T 23-04-2016 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 NIDE_RS12925 d116364a7a755107c0e7de6988b10d88 132 SUPERFAMILY SSF54523 21 128 2.77E-35 T 23-04-2016 NIDE_RS12925 d116364a7a755107c0e7de6988b10d88 132 Gene3D G3DSA:3.30.700.10 1 60 1.1E-5 T 23-04-2016 NIDE_RS12925 d116364a7a755107c0e7de6988b10d88 132 PANTHER PTHR30093 1 131 3.8E-44 T 23-04-2016 NIDE_RS12925 d116364a7a755107c0e7de6988b10d88 132 PANTHER PTHR30093:SF9 1 131 3.8E-44 T 23-04-2016 NIDE_RS12925 d116364a7a755107c0e7de6988b10d88 132 Pfam PF08334 Type II secretion system (T2SS), protein G 17 127 2.5E-40 T 23-04-2016 IPR013545 Type II secretion system protein G NIDE_RS02810 8eb1981e0109dc3253fba0cdd9cb3b4d 191 Gene3D G3DSA:1.10.1060.10 39 130 2.0E-16 T 23-04-2016 NIDE_RS02810 8eb1981e0109dc3253fba0cdd9cb3b4d 191 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS02810 8eb1981e0109dc3253fba0cdd9cb3b4d 191 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 116 127 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS02810 8eb1981e0109dc3253fba0cdd9cb3b4d 191 PANTHER PTHR10849 9 186 1.3E-47 T 23-04-2016 NIDE_RS02810 8eb1981e0109dc3253fba0cdd9cb3b4d 191 PANTHER PTHR10849:SF13 9 186 1.3E-47 T 23-04-2016 NIDE_RS02810 8eb1981e0109dc3253fba0cdd9cb3b4d 191 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 21 160 26.082 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 NIDE_RS02810 8eb1981e0109dc3253fba0cdd9cb3b4d 191 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 31 154 4.3E-40 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 NIDE_RS02810 8eb1981e0109dc3253fba0cdd9cb3b4d 191 Pfam PF12838 4Fe-4S dicluster domain 74 130 1.1E-12 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS02810 8eb1981e0109dc3253fba0cdd9cb3b4d 191 SUPERFAMILY SSF54862 48 179 2.97E-25 T 23-04-2016 NIDE_RS10725 6cbea7695cae7fd96995a7adf752d370 275 PANTHER PTHR30244:SF1 2 274 5.0E-95 T 23-04-2016 NIDE_RS10725 6cbea7695cae7fd96995a7adf752d370 275 PANTHER PTHR30244 2 274 5.0E-95 T 23-04-2016 NIDE_RS10725 6cbea7695cae7fd96995a7adf752d370 275 Pfam PF00700 Bacterial flagellin C-terminal helical region 189 273 2.1E-24 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NIDE_RS10725 6cbea7695cae7fd96995a7adf752d370 275 SUPERFAMILY SSF64518 1 274 3.92E-78 T 23-04-2016 NIDE_RS10725 6cbea7695cae7fd96995a7adf752d370 275 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 2.0E-37 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NIDE_RS10725 6cbea7695cae7fd96995a7adf752d370 275 PRINTS PR00207 Flagellin signature 76 95 3.3E-16 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NIDE_RS10725 6cbea7695cae7fd96995a7adf752d370 275 PRINTS PR00207 Flagellin signature 111 134 3.3E-16 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NIDE_RS10725 6cbea7695cae7fd96995a7adf752d370 275 PRINTS PR00207 Flagellin signature 37 54 3.3E-16 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 NIDE_RS10725 6cbea7695cae7fd96995a7adf752d370 275 Gene3D G3DSA:1.20.1330.10 54 230 1.3E-50 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NIDE_RS17435 938228187c3ec3adaf81f6651c9c6a90 311 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 14 101 2.2E-4 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 NIDE_RS17435 938228187c3ec3adaf81f6651c9c6a90 311 Gene3D G3DSA:3.30.360.10 166 264 8.9E-29 T 23-04-2016 NIDE_RS17435 938228187c3ec3adaf81f6651c9c6a90 311 SUPERFAMILY SSF51735 12 144 1.06E-12 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS17435 938228187c3ec3adaf81f6651c9c6a90 311 SUPERFAMILY SSF55347 133 259 1.57E-20 T 23-04-2016 NIDE_RS17435 938228187c3ec3adaf81f6651c9c6a90 311 Gene3D G3DSA:3.40.50.720 11 165 1.0E-19 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12465 8b60dca11a8193f7e90902046a823315 223 Gene3D G3DSA:2.40.50.100 110 133 2.0E-11 T 23-04-2016 NIDE_RS12465 8b60dca11a8193f7e90902046a823315 223 Gene3D G3DSA:2.40.50.100 43 75 2.0E-11 T 23-04-2016 NIDE_RS12465 8b60dca11a8193f7e90902046a823315 223 PANTHER PTHR30469 37 212 1.7E-16 T 23-04-2016 NIDE_RS12465 8b60dca11a8193f7e90902046a823315 223 Pfam PF13533 Biotin-lipoyl like 42 77 1.0E-9 T 23-04-2016 NIDE_RS12465 8b60dca11a8193f7e90902046a823315 223 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 101 212 1.3E-15 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS12465 8b60dca11a8193f7e90902046a823315 223 SUPERFAMILY SSF111369 32 215 4.97E-18 T 23-04-2016 NIDE_RS15325 907d8e2660ea312b6f53f4242f206da8 233 PANTHER PTHR23083 55 231 4.3E-28 T 23-04-2016 NIDE_RS15325 907d8e2660ea312b6f53f4242f206da8 233 Gene3D G3DSA:1.25.40.10 58 221 3.7E-34 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15325 907d8e2660ea312b6f53f4242f206da8 233 SUPERFAMILY SSF48452 57 217 2.97E-28 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15325 907d8e2660ea312b6f53f4242f206da8 233 Pfam PF13181 Tetratricopeptide repeat 151 179 0.19 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15325 907d8e2660ea312b6f53f4242f206da8 233 Pfam PF00515 Tetratricopeptide repeat 79 111 3.2E-8 T 23-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 NIDE_RS15325 907d8e2660ea312b6f53f4242f206da8 233 Pfam PF07719 Tetratricopeptide repeat 112 140 1.7E-5 T 23-04-2016 IPR013105 Tetratricopeptide repeat 2 NIDE_RS15325 907d8e2660ea312b6f53f4242f206da8 233 SMART SM00028 148 181 78.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15325 907d8e2660ea312b6f53f4242f206da8 233 SMART SM00028 112 147 5.1 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15325 907d8e2660ea312b6f53f4242f206da8 233 SMART SM00028 45 77 61.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15325 907d8e2660ea312b6f53f4242f206da8 233 SMART SM00028 78 111 1.7E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS19955 c4c68b36d070f01aadcc78fa24ad300f 372 Pfam PF01734 Patatin-like phospholipase 14 215 5.0E-16 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 NIDE_RS19955 c4c68b36d070f01aadcc78fa24ad300f 372 Gene3D G3DSA:3.40.1090.10 12 73 8.1E-15 T 23-04-2016 NIDE_RS19955 c4c68b36d070f01aadcc78fa24ad300f 372 SUPERFAMILY SSF52151 9 220 1.99E-26 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS18780 1e9c115de361a04c379000aa93cf2b04 237 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 3 236 1.2E-92 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 NIDE_RS18780 1e9c115de361a04c379000aa93cf2b04 237 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 237 116.06 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 NIDE_RS18780 1e9c115de361a04c379000aa93cf2b04 237 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 3 235 1.4E-98 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 NIDE_RS18780 1e9c115de361a04c379000aa93cf2b04 237 PANTHER PTHR30456:SF0 1 237 1.1E-122 T 23-04-2016 NIDE_RS18780 1e9c115de361a04c379000aa93cf2b04 237 SUPERFAMILY SSF63892 1 236 1.31E-94 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 NIDE_RS18780 1e9c115de361a04c379000aa93cf2b04 237 PANTHER PTHR30456 1 237 1.1E-122 T 23-04-2016 NIDE_RS18780 1e9c115de361a04c379000aa93cf2b04 237 Gene3D G3DSA:3.20.20.70 1 236 9.2E-102 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS17715 098873f1e9f7735c68879f545e0d87ec 291 SUPERFAMILY SSF46626 82 170 2.0E-21 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17715 098873f1e9f7735c68879f545e0d87ec 291 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 190 265 6.9E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17715 098873f1e9f7735c68879f545e0d87ec 291 PANTHER PTHR35008:SF4 29 279 1.1E-50 T 23-04-2016 NIDE_RS17715 098873f1e9f7735c68879f545e0d87ec 291 PANTHER PTHR35008 29 279 1.1E-50 T 23-04-2016 NIDE_RS17715 098873f1e9f7735c68879f545e0d87ec 291 Gene3D G3DSA:1.10.760.10 62 172 2.6E-23 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17715 098873f1e9f7735c68879f545e0d87ec 291 SUPERFAMILY SSF46626 181 275 1.03E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17715 098873f1e9f7735c68879f545e0d87ec 291 Gene3D G3DSA:1.10.760.10 188 271 1.5E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS10510 ef16f1edb7623c5079afa59c02b92a9b 178 Pfam PF03748 Flagellar basal body-associated protein FliL 84 178 8.4E-22 T 23-04-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 NIDE_RS10510 ef16f1edb7623c5079afa59c02b92a9b 178 PANTHER PTHR35091:SF2 2 178 1.7E-33 T 23-04-2016 NIDE_RS10510 ef16f1edb7623c5079afa59c02b92a9b 178 PANTHER PTHR35091 2 178 1.7E-33 T 23-04-2016 NIDE_RS01850 b21c6a8c8fe4b706e67506a4ce064e70 156 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 156 23.629 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 NIDE_RS01850 b21c6a8c8fe4b706e67506a4ce064e70 156 SUPERFAMILY SSF55200 71 156 1.31E-28 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 NIDE_RS01850 b21c6a8c8fe4b706e67506a4ce064e70 156 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 2 156 1.5E-56 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 NIDE_RS01850 b21c6a8c8fe4b706e67506a4ce064e70 156 Gene3D G3DSA:3.30.110.10 68 156 1.6E-33 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 NIDE_RS01850 b21c6a8c8fe4b706e67506a4ce064e70 156 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 2 62 1.0E-24 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 NIDE_RS01850 b21c6a8c8fe4b706e67506a4ce064e70 156 PANTHER PTHR10938 1 156 4.3E-58 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 NIDE_RS01850 b21c6a8c8fe4b706e67506a4ce064e70 156 SUPERFAMILY SSF54364 2 65 6.28E-23 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 NIDE_RS01850 b21c6a8c8fe4b706e67506a4ce064e70 156 ProSitePatterns PS00938 Initiation factor 3 signature. 46 59 - T 23-04-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 NIDE_RS01850 b21c6a8c8fe4b706e67506a4ce064e70 156 Gene3D G3DSA:3.10.20.80 2 65 1.3E-26 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 NIDE_RS01850 b21c6a8c8fe4b706e67506a4ce064e70 156 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 71 156 6.0E-34 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 NIDE_RS12505 277a1bfd589e6e5c6ba73b684f7ae26b 128 PANTHER PTHR11715 1 123 2.8E-60 T 23-04-2016 IPR002930 Glycine cleavage system H-protein NIDE_RS12505 277a1bfd589e6e5c6ba73b684f7ae26b 128 Gene3D G3DSA:2.40.50.100 5 125 3.6E-49 T 23-04-2016 NIDE_RS12505 277a1bfd589e6e5c6ba73b684f7ae26b 128 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 3 124 27.653 T 23-04-2016 IPR002930 Glycine cleavage system H-protein NIDE_RS12505 277a1bfd589e6e5c6ba73b684f7ae26b 128 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 2 125 6.7E-49 T 23-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 NIDE_RS12505 277a1bfd589e6e5c6ba73b684f7ae26b 128 Pfam PF01597 Glycine cleavage H-protein 6 125 2.1E-44 T 23-04-2016 IPR002930 Glycine cleavage system H-protein NIDE_RS12505 277a1bfd589e6e5c6ba73b684f7ae26b 128 SUPERFAMILY SSF51230 2 124 4.06E-44 T 23-04-2016 IPR011053 Single hybrid motif NIDE_RS12505 277a1bfd589e6e5c6ba73b684f7ae26b 128 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 46 75 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site NIDE_RS06950 41900f92e10d0f914b6fcadf62805107 243 Gene3D G3DSA:3.40.50.300 13 230 6.6E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06950 41900f92e10d0f914b6fcadf62805107 243 SMART SM00382 30 220 1.2E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS06950 41900f92e10d0f914b6fcadf62805107 243 SUPERFAMILY SSF52540 15 230 1.27E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06950 41900f92e10d0f914b6fcadf62805107 243 PANTHER PTHR24220 23 230 7.0E-50 T 23-04-2016 NIDE_RS06950 41900f92e10d0f914b6fcadf62805107 243 Pfam PF00005 ABC transporter 23 171 8.5E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS18740 76717b1c622e26168d38f443ccc20cd8 117 Gene3D G3DSA:1.10.1660.10 13 112 3.6E-15 T 23-04-2016 NIDE_RS18740 76717b1c622e26168d38f443ccc20cd8 117 Pfam PF13411 MerR HTH family regulatory protein 13 79 1.8E-19 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS18740 76717b1c622e26168d38f443ccc20cd8 117 SUPERFAMILY SSF46955 13 114 4.76E-16 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS18740 76717b1c622e26168d38f443ccc20cd8 117 PANTHER PTHR30204:SF15 5 113 5.5E-20 T 23-04-2016 NIDE_RS18740 76717b1c622e26168d38f443ccc20cd8 117 SMART SM00422 13 83 1.2E-8 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS18740 76717b1c622e26168d38f443ccc20cd8 117 PANTHER PTHR30204 5 113 5.5E-20 T 23-04-2016 NIDE_RS12545 69c47fadc9582c0c5c96c1e457c4db43 296 SUPERFAMILY SSF51717 15 285 1.22E-101 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 NIDE_RS12545 69c47fadc9582c0c5c96c1e457c4db43 296 Pfam PF00809 Pterin binding enzyme 28 268 2.2E-90 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 NIDE_RS12545 69c47fadc9582c0c5c96c1e457c4db43 296 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 27 42 - T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 NIDE_RS12545 69c47fadc9582c0c5c96c1e457c4db43 296 Gene3D G3DSA:3.20.20.20 23 285 7.1E-107 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 NIDE_RS12545 69c47fadc9582c0c5c96c1e457c4db43 296 PANTHER PTHR20941 15 288 9.1E-127 T 23-04-2016 NIDE_RS12545 69c47fadc9582c0c5c96c1e457c4db43 296 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 27 282 6.3E-101 T 23-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 NIDE_RS12545 69c47fadc9582c0c5c96c1e457c4db43 296 PANTHER PTHR20941:SF1 15 288 9.1E-127 T 23-04-2016 NIDE_RS12545 69c47fadc9582c0c5c96c1e457c4db43 296 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 61 74 - T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 NIDE_RS20125 242f5aca5dac681bbfbcadd0aff8f5a9 513 Pfam PF00691 OmpA family 321 424 6.4E-19 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20125 242f5aca5dac681bbfbcadd0aff8f5a9 513 SUPERFAMILY SSF103088 317 430 1.83E-26 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20125 242f5aca5dac681bbfbcadd0aff8f5a9 513 PANTHER PTHR30329:SF4 301 454 1.4E-32 T 23-04-2016 NIDE_RS20125 242f5aca5dac681bbfbcadd0aff8f5a9 513 Gene3D G3DSA:3.30.1330.60 313 430 4.2E-30 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20125 242f5aca5dac681bbfbcadd0aff8f5a9 513 PANTHER PTHR30329 301 454 1.4E-32 T 23-04-2016 NIDE_RS15410 390840f2941ad4fae2e29d289871c923 107 SUPERFAMILY SSF141371 1 91 1.02E-9 T 23-04-2016 NIDE_RS15410 390840f2941ad4fae2e29d289871c923 107 Pfam PF07238 PilZ domain 4 97 3.9E-12 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS14195 58dbd391d01c02944ba88cd065382c26 425 Pfam PF05860 haemagglutination activity domain 49 150 7.0E-28 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS14195 58dbd391d01c02944ba88cd065382c26 425 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 72 147 4.1E-21 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS14195 58dbd391d01c02944ba88cd065382c26 425 Gene3D G3DSA:2.160.20.10 54 241 6.8E-24 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS14195 58dbd391d01c02944ba88cd065382c26 425 SMART SM00912 43 153 4.2E-12 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS14195 58dbd391d01c02944ba88cd065382c26 425 SUPERFAMILY SSF51126 49 276 6.28E-26 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 TIGRFAM TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family 221 296 5.9E-28 T 23-04-2016 IPR011898 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0051539 NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 TIGRFAM TIGR02175 PorC_KorC: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family 1 187 1.4E-37 T 23-04-2016 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0055114 NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 Gene3D G3DSA:3.30.70.20 235 297 4.0E-17 T 23-04-2016 NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 10 179 1.5E-27 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 Gene3D G3DSA:3.40.920.10 1 187 4.2E-37 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 PANTHER PTHR32154:SF2 1 194 2.4E-31 T 23-04-2016 NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 PANTHER PTHR32154 1 194 2.4E-31 T 23-04-2016 NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 275 286 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 245 256 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 SUPERFAMILY SSF54862 226 295 1.66E-20 T 23-04-2016 NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 SUPERFAMILY SSF53323 1 204 3.79E-29 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 NIDE_RS21065 3fe9c40cbfbdd71f2d51f2c3437dc20a 305 Pfam PF12838 4Fe-4S dicluster domain 244 289 9.5E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS18595 1ce41cadd21c4152867a1956c6100b72 257 Pfam PF00535 Glycosyl transferase family 2 9 173 3.7E-26 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS18595 1ce41cadd21c4152867a1956c6100b72 257 Gene3D G3DSA:3.90.550.10 9 184 4.7E-24 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS18595 1ce41cadd21c4152867a1956c6100b72 257 PANTHER PTHR10859 9 232 9.9E-85 T 23-04-2016 NIDE_RS18595 1ce41cadd21c4152867a1956c6100b72 257 SUPERFAMILY SSF53448 5 234 4.03E-41 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS18595 1ce41cadd21c4152867a1956c6100b72 257 PANTHER PTHR10859:SF49 9 232 9.9E-85 T 23-04-2016 NIDE_RS14545 fc468d92a157bae61eebff59fa2e3897 339 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 1 336 8.7E-136 T 23-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 NIDE_RS14545 fc468d92a157bae61eebff59fa2e3897 339 Gene3D G3DSA:3.40.50.720 2 177 3.4E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS14545 fc468d92a157bae61eebff59fa2e3897 339 Pfam PF16363 GDP-mannose 4,6 dehydratase 3 325 1.3E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS14545 fc468d92a157bae61eebff59fa2e3897 339 PANTHER PTHR10366:SF39 1 337 2.1E-148 T 23-04-2016 NIDE_RS14545 fc468d92a157bae61eebff59fa2e3897 339 Gene3D G3DSA:3.90.25.10 265 338 2.2E-53 T 23-04-2016 NIDE_RS14545 fc468d92a157bae61eebff59fa2e3897 339 Gene3D G3DSA:3.90.25.10 178 230 2.2E-53 T 23-04-2016 NIDE_RS14545 fc468d92a157bae61eebff59fa2e3897 339 PANTHER PTHR10366 1 337 2.1E-148 T 23-04-2016 NIDE_RS14545 fc468d92a157bae61eebff59fa2e3897 339 SUPERFAMILY SSF51735 2 337 1.71E-98 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 Gene3D G3DSA:3.40.50.150 727 864 2.3E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 Pfam PF00535 Glycosyl transferase family 2 1190 1362 1.6E-28 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 Pfam PF00535 Glycosyl transferase family 2 926 1036 6.8E-27 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 Pfam PF00535 Glycosyl transferase family 2 380 510 6.9E-32 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 SUPERFAMILY SSF53335 724 866 2.52E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 SUPERFAMILY SSF53448 377 602 5.69E-55 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 Pfam PF13524 Glycosyl transferases group 1 202 289 2.3E-11 T 23-04-2016 NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 Gene3D G3DSA:1.25.40.10 1484 1702 3.3E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 SUPERFAMILY SSF48452 1496 1701 3.42E-16 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 Pfam PF08241 Methyltransferase domain 731 825 1.1E-14 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 SUPERFAMILY SSF53756 48 291 2.88E-12 T 23-04-2016 NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 PANTHER PTHR22916 377 578 7.0E-54 T 23-04-2016 NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 SUPERFAMILY SSF53448 923 1142 2.18E-51 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 Gene3D G3DSA:3.90.550.10 1190 1428 1.7E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 Gene3D G3DSA:3.90.550.10 377 607 3.8E-56 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 Gene3D G3DSA:3.90.550.10 923 1155 7.3E-54 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20630 8b2709e25cb217b6a21ec3161f6d1ef0 1724 SUPERFAMILY SSF53448 1187 1422 2.61E-57 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 SUPERFAMILY SSF47384 317 388 3.14E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 Gene3D G3DSA:1.10.287.130 323 386 8.5E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 PANTHER PTHR24423:SF445 197 550 2.1E-89 T 23-04-2016 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 SMART SM00091 199 265 6.1E-5 T 23-04-2016 IPR000014 PAS domain NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 Gene3D G3DSA:3.30.450.20 183 307 1.7E-17 T 23-04-2016 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 SMART SM00388 324 390 1.2E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 Pfam PF13426 PAS domain 210 308 1.1E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 SUPERFAMILY SSF55874 381 545 1.44E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 PANTHER PTHR24423 197 550 2.1E-89 T 23-04-2016 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 Gene3D G3DSA:3.30.565.10 390 544 1.8E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 434 545 1.6E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 PRINTS PR00344 Bacterial sensor protein C-terminal signature 496 506 3.0E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 544 3.0E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 PRINTS PR00344 Bacterial sensor protein C-terminal signature 478 492 3.0E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 525 3.0E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 SUPERFAMILY SSF55785 187 307 4.54E-17 T 23-04-2016 IPR000014 PAS domain NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 Pfam PF00512 His Kinase A (phospho-acceptor) domain 325 386 2.0E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 SMART SM00387 433 547 2.1E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS03570 b2c2d1e2772817b494fdf10a97f5e25c 564 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 200 315 1.2E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS14290 594de6aa82a6814ad9970ec84bc33271 531 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 9 528 2.8E-224 T 23-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 NIDE_RS14290 594de6aa82a6814ad9970ec84bc33271 531 PANTHER PTHR23408 1 531 3.5E-298 T 23-04-2016 NIDE_RS14290 594de6aa82a6814ad9970ec84bc33271 531 Pfam PF01642 Methylmalonyl-CoA mutase 11 523 1.5E-217 T 23-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 NIDE_RS14290 594de6aa82a6814ad9970ec84bc33271 531 PANTHER PTHR23408:SF18 1 531 3.5E-298 T 23-04-2016 NIDE_RS14290 594de6aa82a6814ad9970ec84bc33271 531 SUPERFAMILY SSF51703 3 525 1.78E-202 T 23-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 NIDE_RS14290 594de6aa82a6814ad9970ec84bc33271 531 Gene3D G3DSA:3.20.20.240 10 525 5.8E-216 T 23-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 NIDE_RS03550 2c31a5db02c1dacb45a9c420066fd7b3 375 SUPERFAMILY SSF56601 6 365 6.37E-70 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS03550 2c31a5db02c1dacb45a9c420066fd7b3 375 Gene3D G3DSA:3.40.710.10 6 363 1.3E-74 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like NIDE_RS03550 2c31a5db02c1dacb45a9c420066fd7b3 375 PANTHER PTHR22935 7 368 3.4E-60 T 23-04-2016 NIDE_RS03550 2c31a5db02c1dacb45a9c420066fd7b3 375 Pfam PF00144 Beta-lactamase 8 356 1.8E-50 T 23-04-2016 IPR001466 Beta-lactamase-related NIDE_RS03550 2c31a5db02c1dacb45a9c420066fd7b3 375 PANTHER PTHR22935:SF10 7 368 3.4E-60 T 23-04-2016 NIDE_RS08755 a3fdadc8e2b6c5eb26b600dcb1e975f6 107 Pfam PF07238 PilZ domain 15 93 2.3E-8 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS08755 a3fdadc8e2b6c5eb26b600dcb1e975f6 107 Gene3D G3DSA:2.40.10.220 12 91 2.3E-5 T 23-04-2016 NIDE_RS08755 a3fdadc8e2b6c5eb26b600dcb1e975f6 107 SUPERFAMILY SSF141371 9 92 2.55E-10 T 23-04-2016 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SUPERFAMILY SSF48452 255 375 1.9E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 Gene3D G3DSA:1.25.40.10 58 318 2.3E-31 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SUPERFAMILY SSF48452 50 194 3.41E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 Gene3D G3DSA:1.25.40.10 319 360 2.3E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 Pfam PF12770 CHAT domain 693 1038 2.6E-55 T 23-04-2016 IPR024983 CHAT domain NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SUPERFAMILY SSF48452 172 293 2.22E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 PANTHER PTHR19959 65 458 1.9E-87 T 23-04-2016 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 Pfam PF13424 Tetratricopeptide repeat 388 454 2.0E-13 T 23-04-2016 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 Pfam PF13424 Tetratricopeptide repeat 133 206 5.4E-10 T 23-04-2016 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 Pfam PF13424 Tetratricopeptide repeat 218 291 7.2E-13 T 23-04-2016 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 Pfam PF13424 Tetratricopeptide repeat 305 375 6.2E-16 T 23-04-2016 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 Pfam PF13424 Tetratricopeptide repeat 61 123 3.1E-12 T 23-04-2016 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 Gene3D G3DSA:1.25.40.10 361 459 3.2E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SMART SM00028 218 251 36.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SMART SM00028 302 335 0.76 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SMART SM00028 260 293 0.066 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SMART SM00028 428 461 25.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SMART SM00028 51 84 330.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SMART SM00028 386 419 3.2 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SMART SM00028 344 377 0.33 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SMART SM00028 134 167 52.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SMART SM00028 93 125 250.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08965 6e3742fc4e15cbb76ce8cb32da853e2b 1041 SUPERFAMILY SSF48452 337 472 1.31E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS09010 dc9874fb761d394e6d627e1bfc96c6ab 446 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 444 3.0E-116 T 23-04-2016 IPR010263 Type VI secretion protein, VC_A0114 NIDE_RS09010 dc9874fb761d394e6d627e1bfc96c6ab 446 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 20 443 1.2E-115 T 23-04-2016 IPR010263 Type VI secretion protein, VC_A0114 NIDE_RS09010 dc9874fb761d394e6d627e1bfc96c6ab 446 PANTHER PTHR35566:SF1 1 446 5.9E-95 T 23-04-2016 NIDE_RS09010 dc9874fb761d394e6d627e1bfc96c6ab 446 PANTHER PTHR35566 1 446 5.9E-95 T 23-04-2016 NIDE_RS07980 a46ba1260854d8cfc076791a81d23dc2 445 PANTHER PTHR11206:SF95 4 435 1.3E-91 T 23-04-2016 NIDE_RS07980 a46ba1260854d8cfc076791a81d23dc2 445 PANTHER PTHR11206 4 435 1.3E-91 T 23-04-2016 NIDE_RS07980 a46ba1260854d8cfc076791a81d23dc2 445 PIRSF PIRSF006603 4 445 7.3E-102 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 NIDE_RS07980 a46ba1260854d8cfc076791a81d23dc2 445 TIGRFAM TIGR00797 matE: MATE efflux family protein 18 411 4.0E-82 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 NIDE_RS07980 a46ba1260854d8cfc076791a81d23dc2 445 Pfam PF01554 MatE 237 398 6.4E-30 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 NIDE_RS07980 a46ba1260854d8cfc076791a81d23dc2 445 Pfam PF01554 MatE 18 177 7.5E-35 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 NIDE_RS18825 a4e6f32d97055134f1340b5d8c3ef722 89 SMART SM01387 8 88 1.3E-50 T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS18825 a4e6f32d97055134f1340b5d8c3ef722 89 SUPERFAMILY SSF47060 3 89 4.12E-36 T 23-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 NIDE_RS18825 a4e6f32d97055134f1340b5d8c3ef722 89 Pfam PF00312 Ribosomal protein S15 8 88 3.1E-37 T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS18825 a4e6f32d97055134f1340b5d8c3ef722 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 2.0E-39 T 23-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 NIDE_RS18825 a4e6f32d97055134f1340b5d8c3ef722 89 PANTHER PTHR23321 1 88 1.9E-43 T 23-04-2016 NIDE_RS18825 a4e6f32d97055134f1340b5d8c3ef722 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 2.0E-22 T 23-04-2016 NIDE_RS18825 a4e6f32d97055134f1340b5d8c3ef722 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 23.057 T 23-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 NIDE_RS18825 a4e6f32d97055134f1340b5d8c3ef722 89 Gene3D G3DSA:1.10.287.10 3 89 5.5E-39 T 23-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 NIDE_RS18825 a4e6f32d97055134f1340b5d8c3ef722 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS18995 736f7a5a175731016243546887a9cc9a 64 PANTHER PTHR21109 1 64 6.5E-16 T 23-04-2016 NIDE_RS18995 736f7a5a175731016243546887a9cc9a 64 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 1 56 2.2E-18 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 NIDE_RS18995 736f7a5a175731016243546887a9cc9a 64 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 55 14.099 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 NIDE_RS18995 736f7a5a175731016243546887a9cc9a 64 PANTHER PTHR21109:SF3 1 64 6.5E-16 T 23-04-2016 NIDE_RS18995 736f7a5a175731016243546887a9cc9a 64 Pfam PF01165 Ribosomal protein S21 3 54 6.2E-17 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 508 43.162 T 23-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 PANTHER PTHR10277:SF9 1 507 6.6E-262 T 23-04-2016 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 SUPERFAMILY SSF51569 2 291 3.66E-98 T 23-04-2016 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 SUPERFAMILY SSF110921 392 498 1.57E-25 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 SMART SM00917 369 499 3.1E-37 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 PANTHER PTHR10277 1 507 6.6E-262 T 23-04-2016 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 Pfam PF00682 HMGL-like 5 273 3.9E-96 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 Gene3D G3DSA:3.20.20.70 1 347 9.9E-150 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 498 8.6E-38 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS04615 d216bc9b0f361c435d2d0c30c003fc79 515 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 5 496 6.7E-220 T 23-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 NIDE_RS05580 dfd262a326c66b6def2f0f6e4c79668a 105 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 50 1.2E-16 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NIDE_RS05580 dfd262a326c66b6def2f0f6e4c79668a 105 Pfam PF09723 Zinc ribbon domain 1 41 7.2E-15 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NIDE_RS05580 dfd262a326c66b6def2f0f6e4c79668a 105 SMART SM00834 1 43 2.5E-14 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NIDE_RS15040 45c2e483c01ee75fee4d12d972c001ca 206 Gene3D G3DSA:3.90.550.10 9 202 6.1E-43 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS15040 45c2e483c01ee75fee4d12d972c001ca 206 SUPERFAMILY SSF53448 9 195 5.41E-27 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS15040 45c2e483c01ee75fee4d12d972c001ca 206 PANTHER PTHR19136:SF81 1 195 4.8E-32 T 23-04-2016 NIDE_RS15040 45c2e483c01ee75fee4d12d972c001ca 206 PANTHER PTHR19136 1 195 4.8E-32 T 23-04-2016 NIDE_RS15040 45c2e483c01ee75fee4d12d972c001ca 206 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 7 198 20.831 T 23-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 NIDE_RS15040 45c2e483c01ee75fee4d12d972c001ca 206 Pfam PF12804 MobA-like NTP transferase domain 11 154 1.3E-28 T 23-04-2016 IPR025877 MobA-like NTP transferase NIDE_RS13660 941695d942cc99c4eae6ceb09922280a 153 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 3 150 3.0E-47 T 23-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 NIDE_RS13660 941695d942cc99c4eae6ceb09922280a 153 PANTHER PTHR21485:SF3 1 151 3.6E-48 T 23-04-2016 NIDE_RS13660 941695d942cc99c4eae6ceb09922280a 153 PANTHER PTHR21485 1 151 3.6E-48 T 23-04-2016 NIDE_RS13660 941695d942cc99c4eae6ceb09922280a 153 SUPERFAMILY SSF56784 1 151 1.58E-38 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS13660 941695d942cc99c4eae6ceb09922280a 153 Pfam PF08282 haloacid dehalogenase-like hydrolase 67 137 3.0E-8 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS13660 941695d942cc99c4eae6ceb09922280a 153 PIRSF PIRSF006118 1 152 3.2E-59 T 23-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 NIDE_RS13660 941695d942cc99c4eae6ceb09922280a 153 Gene3D G3DSA:3.40.50.1000 1 148 2.2E-40 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS03595 f471d41c5c15ebacf7bd1077c89e02f3 196 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 184 2.7E-49 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 NIDE_RS03595 f471d41c5c15ebacf7bd1077c89e02f3 196 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 177 30.333 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 NIDE_RS03595 f471d41c5c15ebacf7bd1077c89e02f3 196 PANTHER PTHR17224 3 194 1.0E-63 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 NIDE_RS03595 f471d41c5c15ebacf7bd1077c89e02f3 196 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 23-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 NIDE_RS03595 f471d41c5c15ebacf7bd1077c89e02f3 196 Gene3D G3DSA:3.40.50.1470 2 184 2.0E-60 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 NIDE_RS03595 f471d41c5c15ebacf7bd1077c89e02f3 196 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 106 116 - T 23-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 NIDE_RS03595 f471d41c5c15ebacf7bd1077c89e02f3 196 SUPERFAMILY SSF53178 2 184 2.09E-53 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 NIDE_RS03595 f471d41c5c15ebacf7bd1077c89e02f3 196 Pfam PF01195 Peptidyl-tRNA hydrolase 3 183 1.7E-48 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 NIDE_RS14315 bc46d944c5993158264cc93344dba0ee 315 PANTHER PTHR10277:SF1 11 299 1.8E-128 T 23-04-2016 NIDE_RS14315 bc46d944c5993158264cc93344dba0ee 315 Gene3D G3DSA:3.20.20.70 13 298 2.9E-71 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS14315 bc46d944c5993158264cc93344dba0ee 315 PANTHER PTHR10277 11 299 1.8E-128 T 23-04-2016 NIDE_RS14315 bc46d944c5993158264cc93344dba0ee 315 Pfam PF00682 HMGL-like 14 277 6.4E-45 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 NIDE_RS14315 bc46d944c5993158264cc93344dba0ee 315 SUPERFAMILY SSF51569 12 299 1.04E-63 T 23-04-2016 NIDE_RS13755 7e4ac0cf4abc06daf5af5f7911013ed8 443 Pfam PF13692 Glycosyl transferases group 1 250 394 4.3E-11 T 23-04-2016 NIDE_RS13755 7e4ac0cf4abc06daf5af5f7911013ed8 443 SUPERFAMILY SSF53756 1 431 5.76E-20 T 23-04-2016 NIDE_RS16975 f9dd7c6c65f593bcefd6da2d241cc21b 339 Gene3D G3DSA:2.70.70.10 188 337 8.0E-48 T 23-04-2016 NIDE_RS16975 f9dd7c6c65f593bcefd6da2d241cc21b 339 Pfam PF01551 Peptidase family M23 240 333 4.4E-30 T 23-04-2016 IPR016047 Peptidase M23 NIDE_RS16975 f9dd7c6c65f593bcefd6da2d241cc21b 339 PANTHER PTHR21666 162 337 7.8E-43 T 23-04-2016 NIDE_RS16975 f9dd7c6c65f593bcefd6da2d241cc21b 339 SUPERFAMILY SSF51261 180 337 8.37E-53 T 23-04-2016 IPR011055 Duplicated hybrid motif NIDE_RS00715 5e3a31120d1ca327f47034e62d83f353 178 Gene3D G3DSA:2.30.30.60 122 172 4.6E-8 T 23-04-2016 NIDE_RS00715 5e3a31120d1ca327f47034e62d83f353 178 SUPERFAMILY SSF50182 107 174 7.85E-11 T 23-04-2016 IPR010920 LSM domain NIDE_RS00715 5e3a31120d1ca327f47034e62d83f353 178 Pfam PF00924 Mechanosensitive ion channel 65 166 3.9E-18 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 NIDE_RS00715 5e3a31120d1ca327f47034e62d83f353 178 PANTHER PTHR30566 18 173 1.4E-19 T 23-04-2016 NIDE_RS00715 5e3a31120d1ca327f47034e62d83f353 178 SUPERFAMILY SSF82861 23 105 7.72E-5 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 SUPERFAMILY SSF53901 220 415 5.76E-63 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 PIRSF PIRSF000447 1 418 8.6E-148 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 259 373 4.0E-33 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 414 7.7E-153 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 Gene3D G3DSA:3.40.47.10 3 262 5.8E-75 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 249 2.9E-57 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 SMART SM00825 Beta-ketoacyl synthase 5 418 5.4E-18 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 Gene3D G3DSA:3.40.47.10 268 415 2.9E-49 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 SUPERFAMILY SSF53901 3 255 1.4E-73 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 PANTHER PTHR11712 4 415 9.7E-165 T 23-04-2016 NIDE_RS12125 12daa14629741be993203a8ddd3ab4c7 418 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 158 174 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site NIDE_RS08955 cc4bbbb1a14ff4ba5f17eb382bc37f53 301 SUPERFAMILY SSF51004 7 298 1.09E-58 T 23-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain NIDE_RS08955 cc4bbbb1a14ff4ba5f17eb382bc37f53 301 Gene3D G3DSA:2.130.10.10 4 300 4.4E-59 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS08955 cc4bbbb1a14ff4ba5f17eb382bc37f53 301 Pfam PF02239 Cytochrome D1 heme domain 11 119 6.3E-8 T 23-04-2016 NIDE_RS08955 cc4bbbb1a14ff4ba5f17eb382bc37f53 301 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 48 80 4.3E-8 T 23-04-2016 IPR011964 YVTN beta-propeller repeat NIDE_RS08955 cc4bbbb1a14ff4ba5f17eb382bc37f53 301 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 172 210 9.6E-8 T 23-04-2016 IPR011964 YVTN beta-propeller repeat NIDE_RS08955 cc4bbbb1a14ff4ba5f17eb382bc37f53 301 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 259 300 6.4E-14 T 23-04-2016 IPR011964 YVTN beta-propeller repeat NIDE_RS08955 cc4bbbb1a14ff4ba5f17eb382bc37f53 301 PANTHER PTHR13833 5 216 1.0E-21 T 23-04-2016 NIDE_RS07905 4a114c63dc2868d85004792764611e7b 153 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 6 148 2.3E-36 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like NIDE_RS07905 4a114c63dc2868d85004792764611e7b 153 PANTHER PTHR11803 1 152 3.0E-45 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family NIDE_RS07905 4a114c63dc2868d85004792764611e7b 153 PANTHER PTHR11803:SF2 1 152 3.0E-45 T 23-04-2016 NIDE_RS07905 4a114c63dc2868d85004792764611e7b 153 SUPERFAMILY SSF55298 1 151 5.65E-54 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like NIDE_RS07905 4a114c63dc2868d85004792764611e7b 153 Gene3D G3DSA:3.30.1330.40 1 151 8.2E-63 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like NIDE_RS17575 119420ff9f4ec48d11a400a1e0918d1d 85 Gene3D G3DSA:1.10.1200.10 7 77 8.6E-16 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS17575 119420ff9f4ec48d11a400a1e0918d1d 85 SUPERFAMILY SSF47336 5 83 7.98E-13 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS17575 119420ff9f4ec48d11a400a1e0918d1d 85 Pfam PF00550 Phosphopantetheine attachment site 13 72 1.6E-8 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09350 4248d02838e0ec9135b408109d6101ed 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 82 96 - T 23-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 NIDE_RS09350 4248d02838e0ec9135b408109d6101ed 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 53 378 2.8E-44 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIDE_RS09350 4248d02838e0ec9135b408109d6101ed 396 PANTHER PTHR10314:SF3 8 390 2.4E-229 T 23-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 NIDE_RS09350 4248d02838e0ec9135b408109d6101ed 396 PIRSF PIRSF001413 2 396 8.9E-164 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 NIDE_RS09350 4248d02838e0ec9135b408109d6101ed 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 8 390 4.1E-193 T 23-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 NIDE_RS09350 4248d02838e0ec9135b408109d6101ed 396 SUPERFAMILY SSF53686 4 389 7.07E-143 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIDE_RS09350 4248d02838e0ec9135b408109d6101ed 396 PANTHER PTHR10314 8 390 2.4E-229 T 23-04-2016 NIDE_RS09350 4248d02838e0ec9135b408109d6101ed 396 Gene3D G3DSA:3.40.50.1100 178 393 3.1E-92 T 23-04-2016 NIDE_RS09350 4248d02838e0ec9135b408109d6101ed 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 3 392 52.705 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 NIDE_RS09350 4248d02838e0ec9135b408109d6101ed 396 Gene3D G3DSA:3.40.50.1100 99 177 2.0E-19 T 23-04-2016 NIDE_RS15785 0ac6d8f428e414e4092c59d490bd3b01 387 SUPERFAMILY SSF52540 5 334 2.19E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15785 0ac6d8f428e414e4092c59d490bd3b01 387 Gene3D G3DSA:3.40.50.300 103 343 1.4E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15785 0ac6d8f428e414e4092c59d490bd3b01 387 PANTHER PTHR30486:SF3 1 374 3.5E-150 T 23-04-2016 NIDE_RS15785 0ac6d8f428e414e4092c59d490bd3b01 387 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 4 342 1.3E-132 T 23-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 NIDE_RS15785 0ac6d8f428e414e4092c59d490bd3b01 387 Pfam PF00437 Type II/IV secretion system protein 119 246 3.7E-35 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS15785 0ac6d8f428e414e4092c59d490bd3b01 387 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS15785 0ac6d8f428e414e4092c59d490bd3b01 387 PANTHER PTHR30486 1 374 3.5E-150 T 23-04-2016 NIDE_RS13055 627e702e45a848ed9365b273275ee280 331 SUPERFAMILY SSF53756 40 317 4.5E-19 T 23-04-2016 NIDE_RS13055 627e702e45a848ed9365b273275ee280 331 Pfam PF13692 Glycosyl transferases group 1 221 293 1.4E-7 T 23-04-2016 NIDE_RS02660 c9a6684f5b9fcb3013043ee66944e89a 831 Gene3D G3DSA:3.40.50.300 292 422 7.9E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02660 c9a6684f5b9fcb3013043ee66944e89a 831 Gene3D G3DSA:3.40.50.300 49 112 7.9E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02660 c9a6684f5b9fcb3013043ee66944e89a 831 PANTHER PTHR30121 209 527 7.0E-17 T 23-04-2016 NIDE_RS02660 c9a6684f5b9fcb3013043ee66944e89a 831 PANTHER PTHR30121 56 185 7.0E-17 T 23-04-2016 NIDE_RS02660 c9a6684f5b9fcb3013043ee66944e89a 831 SUPERFAMILY SSF52540 46 98 9.16E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02660 c9a6684f5b9fcb3013043ee66944e89a 831 SUPERFAMILY SSF52540 158 467 9.16E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15705 631f1a4fdcc012d57698fbe0363ceca3 274 PANTHER PTHR30413 22 274 7.9E-49 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS15705 631f1a4fdcc012d57698fbe0363ceca3 274 Pfam PF01061 ABC-2 type transporter 24 231 9.9E-28 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 NIDE_RS15705 631f1a4fdcc012d57698fbe0363ceca3 274 PANTHER PTHR30413:SF8 22 274 7.9E-49 T 23-04-2016 NIDE_RS06640 5bd224ac943a00812d0600b2622b9edc 288 SUPERFAMILY SSF55486 88 262 5.05E-5 T 23-04-2016 NIDE_RS06640 5bd224ac943a00812d0600b2622b9edc 288 PANTHER PTHR30168 2 288 9.1E-132 T 23-04-2016 NIDE_RS06640 5bd224ac943a00812d0600b2622b9edc 288 Pfam PF04228 Putative neutral zinc metallopeptidase 1 283 1.8E-110 T 23-04-2016 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative NIDE_RS15240 91874473aa19f86a79e4fd3a13764cdd 224 Pfam PF13661 2OG-Fe(II) oxygenase superfamily 110 219 1.6E-18 T 23-04-2016 NIDE_RS15240 91874473aa19f86a79e4fd3a13764cdd 224 SMART SM00702 25 220 1.7E-4 T 23-04-2016 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 NIDE_RS07015 0ad7bc14452ab9ae87d05188b5f36ca1 223 Pfam PF03167 Uracil DNA glycosylase superfamily 33 173 4.2E-42 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS07015 0ad7bc14452ab9ae87d05188b5f36ca1 223 SUPERFAMILY SSF52141 6 186 8.83E-60 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS07015 0ad7bc14452ab9ae87d05188b5f36ca1 223 PANTHER PTHR33693 7 193 4.2E-71 T 23-04-2016 NIDE_RS07015 0ad7bc14452ab9ae87d05188b5f36ca1 223 SMART SM00986 33 179 7.2E-32 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS07015 0ad7bc14452ab9ae87d05188b5f36ca1 223 PANTHER PTHR33693:SF1 7 193 4.2E-71 T 23-04-2016 NIDE_RS07015 0ad7bc14452ab9ae87d05188b5f36ca1 223 SMART SM00987 33 179 7.2E-32 T 23-04-2016 NIDE_RS07015 0ad7bc14452ab9ae87d05188b5f36ca1 223 Gene3D G3DSA:3.40.470.10 7 189 4.3E-67 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS07015 0ad7bc14452ab9ae87d05188b5f36ca1 223 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 18 185 5.4E-62 T 23-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain NIDE_RS05430 3d609994d910c0f3665e1550d6de029c 93 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 7 75 3.3E-12 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS05430 3d609994d910c0f3665e1550d6de029c 93 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 9 51 3.3E-8 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS05430 3d609994d910c0f3665e1550d6de029c 93 Gene3D G3DSA:3.40.1620.10 7 54 7.7E-8 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS05430 3d609994d910c0f3665e1550d6de029c 93 SUPERFAMILY SSF143120 7 84 2.35E-11 T 23-04-2016 NIDE_RS11445 a4f9f2b63e5d0ae3afaddf987998c0b0 196 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 69 86 - T 23-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 NIDE_RS11445 a4f9f2b63e5d0ae3afaddf987998c0b0 196 Gene3D G3DSA:2.40.100.10 27 191 7.3E-49 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS11445 a4f9f2b63e5d0ae3afaddf987998c0b0 196 PANTHER PTHR11071:SF78 30 190 6.6E-42 T 23-04-2016 NIDE_RS11445 a4f9f2b63e5d0ae3afaddf987998c0b0 196 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 36 191 3.5E-41 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS11445 a4f9f2b63e5d0ae3afaddf987998c0b0 196 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 48 63 1.22E-14 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS11445 a4f9f2b63e5d0ae3afaddf987998c0b0 196 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 142 154 1.22E-14 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS11445 a4f9f2b63e5d0ae3afaddf987998c0b0 196 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 155 170 1.22E-14 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS11445 a4f9f2b63e5d0ae3afaddf987998c0b0 196 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 74 86 1.22E-14 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 NIDE_RS11445 a4f9f2b63e5d0ae3afaddf987998c0b0 196 PANTHER PTHR11071 30 190 6.6E-42 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 NIDE_RS11445 a4f9f2b63e5d0ae3afaddf987998c0b0 196 SUPERFAMILY SSF50891 21 190 5.7E-44 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS12250 9cad4c358c7b916033ef0090e6371fab 660 Gene3D G3DSA:2.40.170.20 165 656 9.3E-79 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS12250 9cad4c358c7b916033ef0090e6371fab 660 Pfam PF00593 TonB dependent receptor 417 654 3.7E-31 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS12250 9cad4c358c7b916033ef0090e6371fab 660 SUPERFAMILY SSF56935 41 656 9.53E-115 T 23-04-2016 NIDE_RS12250 9cad4c358c7b916033ef0090e6371fab 660 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 162 2.2E-26 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS12250 9cad4c358c7b916033ef0090e6371fab 660 PANTHER PTHR32552 13 656 1.3E-52 T 23-04-2016 NIDE_RS12250 9cad4c358c7b916033ef0090e6371fab 660 Gene3D G3DSA:2.170.130.10 36 164 6.1E-38 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02430 826c1fb9efaee6ffcfee7a549b2f0642 350 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 194 345 1.7E-33 T 23-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS02430 826c1fb9efaee6ffcfee7a549b2f0642 350 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 13 191 3.3E-46 T 23-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS02430 826c1fb9efaee6ffcfee7a549b2f0642 350 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 82 95 - T 23-04-2016 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS02430 826c1fb9efaee6ffcfee7a549b2f0642 350 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 10 350 26.677 T 23-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS02430 826c1fb9efaee6ffcfee7a549b2f0642 350 PANTHER PTHR13326 22 347 1.6E-61 T 23-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS02430 826c1fb9efaee6ffcfee7a549b2f0642 350 SUPERFAMILY SSF55120 13 347 1.73E-84 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS09745 8a93d1520c4a6472078947b08732f905 282 Pfam PF13683 Integrase core domain 199 264 4.8E-29 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS09745 8a93d1520c4a6472078947b08732f905 282 Gene3D G3DSA:3.30.420.10 108 265 4.4E-39 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09745 8a93d1520c4a6472078947b08732f905 282 PANTHER PTHR24559:SF185 27 270 1.3E-125 T 23-04-2016 NIDE_RS09745 8a93d1520c4a6472078947b08732f905 282 SUPERFAMILY SSF53098 107 270 6.7E-38 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09745 8a93d1520c4a6472078947b08732f905 282 PANTHER PTHR24559 27 270 1.3E-125 T 23-04-2016 NIDE_RS09745 8a93d1520c4a6472078947b08732f905 282 Pfam PF13276 HTH-like domain 45 98 1.2E-10 T 23-04-2016 IPR025948 HTH-like domain NIDE_RS03835 d1da36029fd8ed7a97be4dcd1b7ed5e9 399 Pfam PF16114 ATP citrate lyase citrate-binding 231 397 1.9E-49 T 23-04-2016 IPR032263 ATP-citrate synthase, citrate-binding domain KEGG: 00020+2.3.3.8|KEGG: 00720+2.3.3.8|MetaCyc: PWY-5172 NIDE_RS03835 d1da36029fd8ed7a97be4dcd1b7ed5e9 399 PANTHER PTHR23118 18 399 2.1E-66 T 23-04-2016 NIDE_RS03835 d1da36029fd8ed7a97be4dcd1b7ed5e9 399 Gene3D G3DSA:3.40.50.261 258 395 6.5E-17 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03835 d1da36029fd8ed7a97be4dcd1b7ed5e9 399 PIRSF PIRSF001554 3 398 2.2E-46 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 NIDE_RS03835 d1da36029fd8ed7a97be4dcd1b7ed5e9 399 SUPERFAMILY SSF52210 255 379 4.19E-15 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03835 d1da36029fd8ed7a97be4dcd1b7ed5e9 399 SUPERFAMILY SSF56059 10 221 8.48E-36 T 23-04-2016 NIDE_RS03835 d1da36029fd8ed7a97be4dcd1b7ed5e9 399 Gene3D G3DSA:3.30.470.20 89 221 4.4E-30 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS03835 d1da36029fd8ed7a97be4dcd1b7ed5e9 399 PANTHER PTHR23118:SF0 18 399 2.1E-66 T 23-04-2016 NIDE_RS03835 d1da36029fd8ed7a97be4dcd1b7ed5e9 399 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 259 284 - T 23-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03835 d1da36029fd8ed7a97be4dcd1b7ed5e9 399 Pfam PF08442 ATP-grasp domain 9 193 7.4E-21 T 23-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 PANTHER PTHR24421:SF16 12 365 4.6E-133 T 23-04-2016 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 PANTHER PTHR24421 12 365 4.6E-133 T 23-04-2016 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 SUPERFAMILY SSF52738 178 364 4.97E-64 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 Pfam PF01339 CheB methylesterase 181 361 6.5E-63 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 15 365 37.765 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 Pfam PF00072 Response regulator receiver domain 17 121 3.5E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 Gene3D G3DSA:3.40.50.2300 13 121 3.1E-32 T 23-04-2016 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 SMART SM00448 15 134 2.2E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 PIRSF PIRSF000876 12 365 1.5E-129 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 Gene3D G3DSA:3.40.50.180 176 365 3.4E-74 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NIDE_RS10790 73e18815dfe0cf945dbe5c0a1c00cc7a 365 SUPERFAMILY SSF52172 13 120 1.42E-29 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10840 8767479486ac64191e4f069c76ec5937 169 Gene3D G3DSA:2.40.50.180 59 99 7.1E-12 T 23-04-2016 NIDE_RS10840 8767479486ac64191e4f069c76ec5937 169 SMART SM00260 19 156 1.7E-44 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10840 8767479486ac64191e4f069c76ec5937 169 Pfam PF01584 CheW-like domain 23 158 5.5E-36 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10840 8767479486ac64191e4f069c76ec5937 169 SUPERFAMILY SSF50341 18 158 5.75E-39 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS10840 8767479486ac64191e4f069c76ec5937 169 PANTHER PTHR22617 17 158 3.3E-48 T 23-04-2016 NIDE_RS10840 8767479486ac64191e4f069c76ec5937 169 Gene3D G3DSA:2.30.30.40 100 150 1.9E-8 T 23-04-2016 NIDE_RS09985 ceac5626bd5d251bcbe49384879be90e 201 PANTHER PTHR30173 32 192 1.8E-33 T 23-04-2016 NIDE_RS09985 ceac5626bd5d251bcbe49384879be90e 201 Pfam PF08281 Sigma-70, region 4 135 185 1.2E-15 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS09985 ceac5626bd5d251bcbe49384879be90e 201 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 34 188 1.8E-24 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS09985 ceac5626bd5d251bcbe49384879be90e 201 SUPERFAMILY SSF88946 35 120 1.61E-12 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS09985 ceac5626bd5d251bcbe49384879be90e 201 Gene3D G3DSA:1.10.1740.10 34 104 2.2E-12 T 23-04-2016 NIDE_RS09985 ceac5626bd5d251bcbe49384879be90e 201 SUPERFAMILY SSF88659 130 191 6.54E-14 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS09985 ceac5626bd5d251bcbe49384879be90e 201 Pfam PF04542 Sigma-70 region 2 37 103 2.3E-12 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS09985 ceac5626bd5d251bcbe49384879be90e 201 Gene3D G3DSA:1.10.10.10 128 192 5.1E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS20585 78ea731a2797390359ddcba52c518232 408 SUPERFAMILY SSF53335 81 239 1.4E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS20585 78ea731a2797390359ddcba52c518232 408 Pfam PF13847 Methyltransferase domain 101 185 7.7E-18 T 23-04-2016 IPR025714 Methyltransferase domain NIDE_RS20585 78ea731a2797390359ddcba52c518232 408 PANTHER PTHR10108 83 178 8.5E-18 T 23-04-2016 NIDE_RS20585 78ea731a2797390359ddcba52c518232 408 Gene3D G3DSA:3.40.50.150 99 256 1.3E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 Pfam PF04539 Sigma-70 region 3 165 240 2.0E-15 T 23-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 Gene3D G3DSA:1.10.601.10 23 154 2.2E-52 T 23-04-2016 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 Pfam PF04542 Sigma-70 region 2 86 150 3.9E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 SUPERFAMILY SSF88946 40 152 4.71E-44 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 PANTHER PTHR30603 17 314 6.1E-100 T 23-04-2016 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 SUPERFAMILY SSF88659 217 312 1.76E-24 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 82 306 1.4E-32 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 Gene3D G3DSA:1.10.10.10 250 315 1.3E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 PRINTS PR00046 Major sigma-70 factor signature 258 270 2.2E-26 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 PRINTS PR00046 Major sigma-70 factor signature 279 294 2.2E-26 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 PRINTS PR00046 Major sigma-70 factor signature 134 142 2.2E-26 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 PRINTS PR00046 Major sigma-70 factor signature 110 123 2.2E-26 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 PRINTS PR00046 Major sigma-70 factor signature 294 305 2.2E-26 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 PANTHER PTHR30603:SF15 17 314 6.1E-100 T 23-04-2016 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 Pfam PF04545 Sigma-70, region 4 256 306 1.4E-17 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 Pfam PF00140 Sigma-70 factor, region 1.2 48 81 6.9E-9 T 23-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 110 123 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 279 305 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 Gene3D G3DSA:1.10.10.10 159 208 2.9E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS05770 811da9c8276d5fb2fefee378f7005f8a 320 SUPERFAMILY SSF88659 159 232 1.35E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Gene3D G3DSA:3.30.450.20 145 262 3.2E-18 T 23-04-2016 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Gene3D G3DSA:3.30.450.20 434 548 4.6E-27 T 23-04-2016 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Gene3D G3DSA:3.30.450.20 549 668 4.1E-18 T 23-04-2016 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SUPERFAMILY SSF47384 671 749 1.88E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SUPERFAMILY SSF55874 741 905 9.69E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SMART SM00091 315 381 7.3E-9 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SMART SM00091 149 216 0.001 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SMART SM00091 559 624 1.1E-6 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SMART SM00091 437 502 2.2E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 800 905 1.7E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 PANTHER PTHR24423 681 912 7.6E-93 T 23-04-2016 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 PANTHER PTHR24423 285 568 7.6E-93 T 23-04-2016 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SMART SM00387 793 909 6.6E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SUPERFAMILY SSF55785 302 425 2.58E-25 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SUPERFAMILY SSF55785 154 267 2.9E-21 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SMART SM00086 222 264 8.9E-8 T 23-04-2016 IPR001610 PAC motif NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SMART SM00086 387 429 3.2E-6 T 23-04-2016 IPR001610 PAC motif NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SMART SM00086 630 670 76.0 T 23-04-2016 IPR001610 PAC motif NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SMART SM00086 509 551 0.0021 T 23-04-2016 IPR001610 PAC motif NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Gene3D G3DSA:3.30.565.10 737 909 1.5E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Pfam PF00989 PAS fold 562 649 8.0E-6 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Pfam PF00989 PAS fold 438 548 5.3E-21 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Pfam PF00512 His Kinase A (phospho-acceptor) domain 685 749 3.7E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SUPERFAMILY SSF55785 548 668 2.09E-17 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 PRINTS PR00344 Bacterial sensor protein C-terminal signature 837 851 2.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 PRINTS PR00344 Bacterial sensor protein C-terminal signature 869 887 2.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 PRINTS PR00344 Bacterial sensor protein C-terminal signature 855 865 2.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 PRINTS PR00344 Bacterial sensor protein C-terminal signature 893 906 2.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Gene3D G3DSA:1.10.287.130 679 736 2.3E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SUPERFAMILY SSF55785 432 549 3.89E-26 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 434 557 1.2E-30 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 313 434 5.1E-14 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 556 675 1.3E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 154 271 4.1E-13 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Gene3D G3DSA:3.30.450.20 306 425 3.6E-30 T 23-04-2016 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Pfam PF13426 PAS domain 160 263 7.7E-11 T 23-04-2016 IPR000014 PAS domain NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 SMART SM00388 683 751 6.9E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS13975 21ba6407ce65405cfa88f7b1e9ee9ee7 915 Pfam PF08447 PAS fold 339 422 1.5E-19 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 NIDE_RS03240 1cd0210ebbf50da36f61405525e007dc 642 SUPERFAMILY SSF81901 402 482 1.7E-11 T 23-04-2016 NIDE_RS03240 1cd0210ebbf50da36f61405525e007dc 642 Gene3D G3DSA:1.25.40.10 390 489 1.5E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS03240 1cd0210ebbf50da36f61405525e007dc 642 Pfam PF08238 Sel1 repeat 416 445 16.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS03240 1cd0210ebbf50da36f61405525e007dc 642 Pfam PF08238 Sel1 repeat 452 478 1.4E-5 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS03240 1cd0210ebbf50da36f61405525e007dc 642 SMART SM00671 452 487 1.3E-4 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS03240 1cd0210ebbf50da36f61405525e007dc 642 SMART SM00671 414 450 150.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS10100 fbf29f807fc7a54534093c0f655d70d1 436 Pfam PF07690 Major Facilitator Superfamily 30 329 3.2E-9 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS10100 fbf29f807fc7a54534093c0f655d70d1 436 Gene3D G3DSA:1.20.1250.20 22 198 1.8E-9 T 23-04-2016 NIDE_RS10100 fbf29f807fc7a54534093c0f655d70d1 436 PANTHER PTHR31187 1 423 8.3E-68 T 23-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 NIDE_RS10100 fbf29f807fc7a54534093c0f655d70d1 436 SUPERFAMILY SSF103473 20 411 8.5E-20 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 PANTHER PTHR41259 1 693 7.3E-33 T 23-04-2016 NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 PANTHER PTHR41259 846 1164 7.3E-33 T 23-04-2016 NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 Gene3D G3DSA:3.40.50.300 1049 1162 8.4E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 Gene3D G3DSA:3.40.50.300 815 816 8.4E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 Gene3D G3DSA:3.40.50.300 1 96 8.4E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 Gene3D G3DSA:3.40.50.300 187 222 8.4E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 PANTHER PTHR41259:SF1 1 693 7.3E-33 T 23-04-2016 NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 PANTHER PTHR41259:SF1 846 1164 7.3E-33 T 23-04-2016 NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 SUPERFAMILY SSF52540 1 81 2.37E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 SUPERFAMILY SSF52540 214 238 2.37E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 SUPERFAMILY SSF52540 1065 1163 2.37E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08735 c37ad0e7d5ecca9171afe86518d8e50a 1176 Pfam PF13514 AAA domain 1 216 3.3E-71 T 23-04-2016 NIDE_RS07030 5dfc58287dcb8b4bd5afa49701f54f2f 310 Gene3D G3DSA:3.40.50.1980 2 151 6.4E-21 T 23-04-2016 NIDE_RS07030 5dfc58287dcb8b4bd5afa49701f54f2f 310 SUPERFAMILY SSF53807 2 43 1.26E-44 T 23-04-2016 NIDE_RS07030 5dfc58287dcb8b4bd5afa49701f54f2f 310 SUPERFAMILY SSF53807 70 288 1.26E-44 T 23-04-2016 NIDE_RS07030 5dfc58287dcb8b4bd5afa49701f54f2f 310 PANTHER PTHR30535:SF2 2 288 1.9E-74 T 23-04-2016 NIDE_RS07030 5dfc58287dcb8b4bd5afa49701f54f2f 310 Pfam PF01497 Periplasmic binding protein 8 263 1.3E-15 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 NIDE_RS07030 5dfc58287dcb8b4bd5afa49701f54f2f 310 PANTHER PTHR30535 2 288 1.9E-74 T 23-04-2016 NIDE_RS07030 5dfc58287dcb8b4bd5afa49701f54f2f 310 Gene3D G3DSA:3.40.50.1980 154 288 4.0E-24 T 23-04-2016 NIDE_RS20290 d944b42005550494a34078717a795cb1 883 Pfam PF05226 CHASE2 domain 15 321 3.2E-27 T 23-04-2016 IPR007890 CHASE2 NIDE_RS20290 d944b42005550494a34078717a795cb1 883 SUPERFAMILY SSF52540 500 743 4.24E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20290 d944b42005550494a34078717a795cb1 883 Gene3D G3DSA:3.40.50.300 501 673 5.7E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20290 d944b42005550494a34078717a795cb1 883 Gene3D G3DSA:1.10.10.60 729 802 1.4E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS20290 d944b42005550494a34078717a795cb1 883 Gene3D G3DSA:1.10.8.60 674 728 3.3E-17 T 23-04-2016 NIDE_RS20290 d944b42005550494a34078717a795cb1 883 Pfam PF00158 Sigma-54 interaction domain 501 666 7.7E-64 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS20290 d944b42005550494a34078717a795cb1 883 PANTHER PTHR32071 442 813 1.7E-124 T 23-04-2016 NIDE_RS20290 d944b42005550494a34078717a795cb1 883 SMART SM00382 521 664 1.8E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS20290 d944b42005550494a34078717a795cb1 883 SMART SM01080 20 325 1.1E-15 T 23-04-2016 IPR007890 CHASE2 NIDE_RS14200 cea1410131dc92f2fe380fe31720b1c1 609 Gene3D G3DSA:2.40.160.50 225 605 2.0E-63 T 23-04-2016 NIDE_RS14200 cea1410131dc92f2fe380fe31720b1c1 609 Gene3D G3DSA:3.10.20.310 111 190 6.7E-24 T 23-04-2016 NIDE_RS14200 cea1410131dc92f2fe380fe31720b1c1 609 Pfam PF01103 Surface antigen 293 593 2.8E-11 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 NIDE_RS14200 cea1410131dc92f2fe380fe31720b1c1 609 PANTHER PTHR34597 96 609 3.4E-70 T 23-04-2016 NIDE_RS14200 cea1410131dc92f2fe380fe31720b1c1 609 PANTHER PTHR34597:SF1 96 609 3.4E-70 T 23-04-2016 NIDE_RS14200 cea1410131dc92f2fe380fe31720b1c1 609 Pfam PF08479 POTRA domain, ShlB-type 116 190 1.1E-21 T 23-04-2016 IPR013686 Polypeptide-transport-associated, ShlB-type NIDE_RS05485 892ed6d7eed6dcbedef78f1cc1f54648 160 PANTHER PTHR30212 18 154 9.3E-26 T 23-04-2016 NIDE_RS05485 892ed6d7eed6dcbedef78f1cc1f54648 160 SUPERFAMILY SSF50800 14 157 7.85E-34 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain NIDE_RS05485 892ed6d7eed6dcbedef78f1cc1f54648 160 Gene3D G3DSA:2.40.33.20 17 157 1.4E-39 T 23-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like NIDE_RS05485 892ed6d7eed6dcbedef78f1cc1f54648 160 Pfam PF03473 MOSC domain 42 154 3.6E-13 T 23-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Gene3D G3DSA:1.10.8.60 720 801 1.8E-28 T 23-04-2016 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 139 1.5E-12 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 65 1.9E-13 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Gene3D G3DSA:1.10.1780.10 1 137 2.8E-38 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 645 659 2.4E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 612 630 2.4E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 583 601 2.4E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 538 556 2.4E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 SUPERFAMILY SSF52540 158 467 5.02E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 SUPERFAMILY SSF81923 3 132 3.24E-27 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Gene3D G3DSA:3.40.50.300 418 472 3.4E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 SUPERFAMILY SSF52540 483 795 2.53E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 711 791 2.9E-25 T 23-04-2016 IPR019489 Clp ATPase, C-terminal NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 PANTHER PTHR11638:SF18 1 806 0.0 T 23-04-2016 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 568 586 - T 23-04-2016 IPR028299 ClpA/B, conserved site 2 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Pfam PF07724 AAA domain (Cdc48 subfamily) 533 705 5.8E-52 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 SMART SM00382 197 341 6.4E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 SMART SM00382 534 730 1.1E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Gene3D G3DSA:3.40.50.300 487 660 5.1E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Gene3D G3DSA:3.40.50.300 694 719 5.1E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 292 304 - T 23-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 202 317 2.7E-12 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Gene3D G3DSA:3.40.50.300 159 340 1.8E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 PANTHER PTHR11638 1 806 0.0 T 23-04-2016 NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 SMART SM01086 711 800 4.7E-33 T 23-04-2016 IPR019489 Clp ATPase, C-terminal NIDE_RS11260 4ec59c93adb2b4f2a5f3aeda61c76432 809 Gene3D G3DSA:1.10.8.60 342 417 8.4E-33 T 23-04-2016 NIDE_RS19770 542d0d445f0ff85a4601356259bab0c5 257 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 255 5.9E-86 T 23-04-2016 NIDE_RS19770 542d0d445f0ff85a4601356259bab0c5 257 Gene3D G3DSA:3.60.10.10 1 256 3.1E-77 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase NIDE_RS19770 542d0d445f0ff85a4601356259bab0c5 257 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 248 2.2E-29 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase NIDE_RS19770 542d0d445f0ff85a4601356259bab0c5 257 PANTHER PTHR22748:SF7 1 255 4.9E-96 T 23-04-2016 NIDE_RS19770 542d0d445f0ff85a4601356259bab0c5 257 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 255 2.5E-81 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 NIDE_RS19770 542d0d445f0ff85a4601356259bab0c5 257 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 23-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 NIDE_RS19770 542d0d445f0ff85a4601356259bab0c5 257 PANTHER PTHR22748 1 255 4.9E-96 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 NIDE_RS19770 542d0d445f0ff85a4601356259bab0c5 257 SUPERFAMILY SSF56219 1 256 4.32E-73 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase NIDE_RS17870 3ffa5f7c554dca7596b638660f831979 290 Pfam PF13557 Putative MetA-pathway of phenol degradation 78 290 3.9E-13 T 23-04-2016 IPR025737 MetA-pathway of phenol degradation, putative NIDE_RS01070 b71fbde0afe9acb61787cc7a5381a942 165 PANTHER PTHR10884:SF6 1 150 1.9E-57 T 23-04-2016 NIDE_RS01070 b71fbde0afe9acb61787cc7a5381a942 165 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 77 134 5.0E-15 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 NIDE_RS01070 b71fbde0afe9acb61787cc7a5381a942 165 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 28 151 1.1E-42 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 NIDE_RS01070 b71fbde0afe9acb61787cc7a5381a942 165 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 4 163 26.057 T 23-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 NIDE_RS01070 b71fbde0afe9acb61787cc7a5381a942 165 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 28 149 7.5E-42 T 23-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 NIDE_RS01070 b71fbde0afe9acb61787cc7a5381a942 165 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 110 131 - T 23-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 NIDE_RS01070 b71fbde0afe9acb61787cc7a5381a942 165 SUPERFAMILY SSF143243 3 151 2.48E-49 T 23-04-2016 NIDE_RS01070 b71fbde0afe9acb61787cc7a5381a942 165 PANTHER PTHR10884 1 150 1.9E-57 T 23-04-2016 NIDE_RS03970 da0e743eeadeb093ae4e42eae0e8fddd 255 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 21 254 6.5E-80 T 23-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria NIDE_RS03970 da0e743eeadeb093ae4e42eae0e8fddd 255 PANTHER PTHR30188:SF4 1 255 5.2E-115 T 23-04-2016 NIDE_RS03970 da0e743eeadeb093ae4e42eae0e8fddd 255 PANTHER PTHR30188 1 255 5.2E-115 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 NIDE_RS03970 da0e743eeadeb093ae4e42eae0e8fddd 255 Pfam PF02405 Permease MlaE 42 252 1.7E-84 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 NIDE_RS20475 b751854d808637d3ae3e59bd4a0c16d8 556 PRINTS PR01217 Proline rich extensin signature 162 183 5.2E-11 T 23-04-2016 NIDE_RS20475 b751854d808637d3ae3e59bd4a0c16d8 556 PRINTS PR01217 Proline rich extensin signature 183 199 5.2E-11 T 23-04-2016 NIDE_RS20475 b751854d808637d3ae3e59bd4a0c16d8 556 PRINTS PR01217 Proline rich extensin signature 150 162 5.2E-11 T 23-04-2016 NIDE_RS20475 b751854d808637d3ae3e59bd4a0c16d8 556 PRINTS PR01217 Proline rich extensin signature 295 320 5.2E-11 T 23-04-2016 NIDE_RS20475 b751854d808637d3ae3e59bd4a0c16d8 556 Gene3D G3DSA:2.60.40.10 479 552 1.5E-9 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS20475 b751854d808637d3ae3e59bd4a0c16d8 556 SUPERFAMILY SSF49265 463 550 3.77E-8 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20475 b751854d808637d3ae3e59bd4a0c16d8 556 Gene3D G3DSA:3.90.810.10 151 189 1.4E-4 T 23-04-2016 IPR000095 CRIB domain NIDE_RS04690 8873f9b6f4a6d359e8232c583058ea47 503 Pfam PF10150 Ribonuclease E/G family 138 407 1.2E-102 T 23-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 NIDE_RS04690 8873f9b6f4a6d359e8232c583058ea47 503 Gene3D G3DSA:2.40.50.140 31 142 9.7E-31 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS04690 8873f9b6f4a6d359e8232c583058ea47 503 Pfam PF00575 S1 RNA binding domain 36 123 1.0E-5 T 23-04-2016 IPR003029 S1 domain GO:0003676 NIDE_RS04690 8873f9b6f4a6d359e8232c583058ea47 503 SMART SM00316 37 136 1.5E-6 T 23-04-2016 IPR022967 RNA-binding domain, S1 NIDE_RS04690 8873f9b6f4a6d359e8232c583058ea47 503 SUPERFAMILY SSF50249 39 142 3.8E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS04690 8873f9b6f4a6d359e8232c583058ea47 503 PANTHER PTHR30001 1 503 1.7E-189 T 23-04-2016 NIDE_RS04690 8873f9b6f4a6d359e8232c583058ea47 503 PANTHER PTHR30001:SF0 1 503 1.7E-189 T 23-04-2016 NIDE_RS04690 8873f9b6f4a6d359e8232c583058ea47 503 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 440 9.1E-151 T 23-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 PANTHER PTHR12124 9 333 9.4E-59 T 23-04-2016 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 SMART SM00474 8 179 9.0E-29 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 Pfam PF00570 HRDC domain 224 288 3.8E-18 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 Pfam PF01612 3'-5' exonuclease 10 178 7.7E-33 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 SUPERFAMILY SSF47819 311 381 3.18E-9 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 SUPERFAMILY SSF53098 7 217 6.74E-57 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 TIGRFAM TIGR01388 rnd: ribonuclease D 11 377 2.4E-107 T 23-04-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 Gene3D G3DSA:3.30.420.10 7 182 2.5E-17 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 SUPERFAMILY SSF47819 202 306 7.1E-28 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 Hamap MF_01899 Ribonuclease D [rnd]. 8 379 36.453 T 23-04-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 SMART SM00341 219 299 4.8E-12 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 NIDE_RS11210 1ed195e41a4e6c7243fb9c0817f6b0c9 401 Gene3D G3DSA:1.10.150.80 229 291 5.1E-4 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 NIDE_RS20920 67a050d9b92a447e460a691275e9116d 145 Pfam PF16798 Domain of unknown function (DUF5069) 4 144 6.1E-48 T 23-04-2016 IPR031849 Domain of unknown function DUF5069 NIDE_RS03215 f3cc75b1354b6ec0b0d27a15d9e88dad 270 Pfam PF04240 Protein of unknown function (DUF422) 18 251 2.5E-21 T 23-04-2016 IPR007354 Carotene biosynthesis associated membrane protein NIDE_RS03215 f3cc75b1354b6ec0b0d27a15d9e88dad 270 PANTHER PTHR39419 135 264 7.2E-21 T 23-04-2016 IPR007354 Carotene biosynthesis associated membrane protein NIDE_RS03215 f3cc75b1354b6ec0b0d27a15d9e88dad 270 PANTHER PTHR39419 14 118 7.2E-21 T 23-04-2016 IPR007354 Carotene biosynthesis associated membrane protein NIDE_RS16210 ea6c9ec656d5e96425b3a15213b4f038 255 SUPERFAMILY SSF52309 20 94 7.32E-5 T 23-04-2016 NIDE_RS16210 ea6c9ec656d5e96425b3a15213b4f038 255 Gene3D G3DSA:3.40.50.1810 48 94 6.8E-4 T 23-04-2016 IPR007710 Nucleoside 2-deoxyribosyltransferase GO:0009159|GO:0050144|GO:0070694 NIDE_RS05695 3a27c57095b6f3c1e45d0f01671c9cae 476 SUPERFAMILY SSF103473 44 212 2.49E-13 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS05695 3a27c57095b6f3c1e45d0f01671c9cae 476 Pfam PF07690 Major Facilitator Superfamily 257 429 9.3E-13 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS05695 3a27c57095b6f3c1e45d0f01671c9cae 476 SUPERFAMILY SSF103473 248 438 2.62E-15 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS05695 3a27c57095b6f3c1e45d0f01671c9cae 476 Gene3D G3DSA:1.20.1250.20 47 212 1.9E-7 T 23-04-2016 NIDE_RS05695 3a27c57095b6f3c1e45d0f01671c9cae 476 Gene3D G3DSA:1.20.1250.20 249 437 3.2E-17 T 23-04-2016 NIDE_RS05695 3a27c57095b6f3c1e45d0f01671c9cae 476 PANTHER PTHR23526:SF2 16 443 5.0E-67 T 23-04-2016 NIDE_RS05695 3a27c57095b6f3c1e45d0f01671c9cae 476 PANTHER PTHR23526 16 443 5.0E-67 T 23-04-2016 NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 PRINTS PR01438 Universal stress protein signature 258 280 3.0E-11 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 PRINTS PR01438 Universal stress protein signature 240 252 3.0E-11 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 PRINTS PR01438 Universal stress protein signature 10 28 3.0E-11 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 SUPERFAMILY SSF52402 164 280 3.52E-18 T 23-04-2016 NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 PANTHER PTHR31964 16 89 1.4E-17 T 23-04-2016 NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 PANTHER PTHR31964 224 282 1.4E-17 T 23-04-2016 NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 Gene3D G3DSA:3.40.50.620 10 148 9.7E-15 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 SUPERFAMILY SSF52402 9 147 2.09E-14 T 23-04-2016 NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 Gene3D G3DSA:3.40.50.620 215 281 9.3E-15 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 Pfam PF00582 Universal stress protein family 212 280 3.5E-13 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS20345 5a1970f4645cda7aa8464ad447b6294a 284 Pfam PF00582 Universal stress protein family 11 147 1.1E-11 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS13845 536473ac755aacbc4563e41a4b727c53 299 SUPERFAMILY SSF53448 5 208 1.69E-51 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13845 536473ac755aacbc4563e41a4b727c53 299 Gene3D G3DSA:3.90.550.10 5 224 3.9E-51 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13845 536473ac755aacbc4563e41a4b727c53 299 Pfam PF00535 Glycosyl transferase family 2 7 166 6.5E-30 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS13845 536473ac755aacbc4563e41a4b727c53 299 SUPERFAMILY SSF48452 236 297 9.96E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS13845 536473ac755aacbc4563e41a4b727c53 299 PANTHER PTHR22916 1 273 2.2E-48 T 23-04-2016 NIDE_RS01075 372f86833eae4598303a19d7085c9582 175 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 124 140 - T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 NIDE_RS01075 372f86833eae4598303a19d7085c9582 175 Gene3D G3DSA:3.40.50.700 27 158 5.3E-35 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 NIDE_RS01075 372f86833eae4598303a19d7085c9582 175 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 2 157 43.313 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 NIDE_RS01075 372f86833eae4598303a19d7085c9582 175 PANTHER PTHR11995 16 164 3.4E-91 T 23-04-2016 NIDE_RS01075 372f86833eae4598303a19d7085c9582 175 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 17 158 2.0E-72 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 NIDE_RS01075 372f86833eae4598303a19d7085c9582 175 SUPERFAMILY SSF56770 15 160 4.97E-68 T 23-04-2016 NIDE_RS01075 372f86833eae4598303a19d7085c9582 175 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 44 152 2.8E-25 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 NIDE_RS01045 76c3676a7547a5ace30151204d9771c3 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.788 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 NIDE_RS01045 76c3676a7547a5ace30151204d9771c3 100 PANTHER PTHR11434 3 100 1.2E-36 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 NIDE_RS01045 76c3676a7547a5ace30151204d9771c3 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 7 95 3.5E-21 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 NIDE_RS01045 76c3676a7547a5ace30151204d9771c3 100 PANTHER PTHR11434:SF0 3 100 1.2E-36 T 23-04-2016 NIDE_RS09015 7b618c065c7b99154f206b9412c6411f 232 PANTHER PTHR38033 4 228 4.8E-29 T 23-04-2016 NIDE_RS09015 7b618c065c7b99154f206b9412c6411f 232 Pfam PF09850 Type VI secretion system protein DotU 12 210 2.4E-55 T 23-04-2016 IPR017732 Type IV / VI secretion system, DotU NIDE_RS09015 7b618c065c7b99154f206b9412c6411f 232 PANTHER PTHR38033:SF1 4 228 4.8E-29 T 23-04-2016 NIDE_RS09015 7b618c065c7b99154f206b9412c6411f 232 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 12 215 1.4E-54 T 23-04-2016 IPR017732 Type IV / VI secretion system, DotU NIDE_RS06940 5297d0a3d8f27c0ae828780eeeb328b1 110 SUPERFAMILY SSF141371 8 103 5.3E-11 T 23-04-2016 NIDE_RS06940 5297d0a3d8f27c0ae828780eeeb328b1 110 Pfam PF07238 PilZ domain 8 104 1.5E-9 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS06940 5297d0a3d8f27c0ae828780eeeb328b1 110 Gene3D G3DSA:2.40.10.220 15 105 3.4E-4 T 23-04-2016 NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 SUPERFAMILY SSF49503 472 588 8.43E-27 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 ProSitePatterns PS00080 Multicopper oxidases signature 2. 571 582 - T 23-04-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 SUPERFAMILY SSF49503 289 403 5.3E-23 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 Pfam PF07731 Multicopper oxidase 478 591 2.2E-18 T 23-04-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 Gene3D G3DSA:2.60.40.420 476 591 1.8E-28 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 PANTHER PTHR11709 183 220 1.0E-75 T 23-04-2016 NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 PANTHER PTHR11709 111 164 1.0E-75 T 23-04-2016 NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 PANTHER PTHR11709 242 615 1.0E-75 T 23-04-2016 NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 Gene3D G3DSA:2.60.40.420 100 269 1.7E-15 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 SUPERFAMILY SSF49503 106 273 2.31E-18 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 Gene3D G3DSA:2.60.40.420 288 404 3.8E-30 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 PANTHER PTHR11709:SF2 183 220 1.0E-75 T 23-04-2016 NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 PANTHER PTHR11709:SF2 111 164 1.0E-75 T 23-04-2016 NIDE_RS16070 fe2449b598dfe8e337480efffbfec8a4 619 PANTHER PTHR11709:SF2 242 615 1.0E-75 T 23-04-2016 NIDE_RS07100 9d11ba624114fe1b082ab378aa1c11df 303 PANTHER PTHR31773 210 288 1.7E-50 T 23-04-2016 NIDE_RS07100 9d11ba624114fe1b082ab378aa1c11df 303 PANTHER PTHR31773 29 184 1.7E-50 T 23-04-2016 NIDE_RS07100 9d11ba624114fe1b082ab378aa1c11df 303 PANTHER PTHR31773:SF8 210 288 1.7E-50 T 23-04-2016 NIDE_RS07100 9d11ba624114fe1b082ab378aa1c11df 303 PANTHER PTHR31773:SF8 29 184 1.7E-50 T 23-04-2016 NIDE_RS07100 9d11ba624114fe1b082ab378aa1c11df 303 Gene3D G3DSA:3.40.50.1460 11 288 3.9E-58 T 23-04-2016 IPR029030 Caspase-like domain NIDE_RS07100 9d11ba624114fe1b082ab378aa1c11df 303 Pfam PF00656 Caspase domain 28 288 5.1E-27 T 23-04-2016 NIDE_RS01730 b0f8a1673e0543ca0dfde17d3aa63fc1 320 PANTHER PTHR11079:SF73 4 313 2.5E-96 T 23-04-2016 NIDE_RS01730 b0f8a1673e0543ca0dfde17d3aa63fc1 320 PANTHER PTHR11079 4 313 2.5E-96 T 23-04-2016 NIDE_RS01730 b0f8a1673e0543ca0dfde17d3aa63fc1 320 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 130 144 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS01730 b0f8a1673e0543ca0dfde17d3aa63fc1 320 Pfam PF01479 S4 domain 15 60 3.9E-8 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS01730 b0f8a1673e0543ca0dfde17d3aa63fc1 320 SUPERFAMILY SSF55120 76 300 1.03E-68 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS01730 b0f8a1673e0543ca0dfde17d3aa63fc1 320 Pfam PF00849 RNA pseudouridylate synthase 89 239 2.4E-33 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS01730 b0f8a1673e0543ca0dfde17d3aa63fc1 320 SMART SM00363 14 78 1.5E-7 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS01730 b0f8a1673e0543ca0dfde17d3aa63fc1 320 Gene3D G3DSA:3.10.290.10 14 100 4.3E-11 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 NIDE_RS01730 b0f8a1673e0543ca0dfde17d3aa63fc1 320 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 12 298 5.3E-81 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS01730 b0f8a1673e0543ca0dfde17d3aa63fc1 320 SUPERFAMILY SSF55174 14 100 6.39E-12 T 23-04-2016 NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 SUPERFAMILY SSF56235 1 230 6.69E-67 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 PIRSF PIRSF001589 1 632 7.3E-167 T 23-04-2016 NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 Pfam PF13522 Glutamine amidotransferase domain 34 167 1.8E-45 T 23-04-2016 NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 PANTHER PTHR11772 2 395 1.7E-157 T 23-04-2016 NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 PANTHER PTHR11772 482 592 1.7E-157 T 23-04-2016 NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 PANTHER PTHR11772:SF10 2 395 1.7E-157 T 23-04-2016 NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 PANTHER PTHR11772:SF10 482 592 1.7E-157 T 23-04-2016 NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 Pfam PF00733 Asparagine synthase 249 626 5.5E-82 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 570 3.1E-142 T 23-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 Gene3D G3DSA:3.40.50.620 229 389 3.5E-75 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 Gene3D G3DSA:3.40.50.620 485 627 3.5E-75 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 Gene3D G3DSA:3.60.20.10 1 228 1.2E-71 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 SUPERFAMILY SSF52402 225 391 5.24E-70 T 23-04-2016 NIDE_RS13785 e331d47935c79183096403fd5fafbc89 632 SUPERFAMILY SSF52402 487 621 5.24E-70 T 23-04-2016 NIDE_RS18450 8bfa6f0f412a05fc4d8b12d936fb56b7 95 Pfam PF00216 Bacterial DNA-binding protein 5 91 7.3E-23 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS18450 8bfa6f0f412a05fc4d8b12d936fb56b7 95 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 6.1E-8 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS18450 8bfa6f0f412a05fc4d8b12d936fb56b7 95 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 6.1E-8 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS18450 8bfa6f0f412a05fc4d8b12d936fb56b7 95 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 6.1E-8 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS18450 8bfa6f0f412a05fc4d8b12d936fb56b7 95 PANTHER PTHR33175 5 91 1.8E-25 T 23-04-2016 NIDE_RS18450 8bfa6f0f412a05fc4d8b12d936fb56b7 95 SUPERFAMILY SSF47729 5 91 2.36E-21 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 NIDE_RS18450 8bfa6f0f412a05fc4d8b12d936fb56b7 95 Gene3D G3DSA:4.10.520.10 4 91 3.0E-22 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 NIDE_RS18450 8bfa6f0f412a05fc4d8b12d936fb56b7 95 SMART SM00411 5 92 1.4E-16 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 NIDE_RS00740 29416d15fbe75c06172489d5c008839d 110 Pfam PF02627 Carboxymuconolactone decarboxylase family 25 99 1.7E-14 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS00740 29416d15fbe75c06172489d5c008839d 110 Gene3D G3DSA:1.20.1290.10 13 101 3.1E-28 T 23-04-2016 IPR029032 AhpD-like NIDE_RS00740 29416d15fbe75c06172489d5c008839d 110 TIGRFAM TIGR04169 perox_w_seleSAM: alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein 2 110 5.0E-58 T 23-04-2016 IPR026445 Alkylhydroperoxidase/carboxymuconolactone decarboxylase family NIDE_RS00740 29416d15fbe75c06172489d5c008839d 110 PANTHER PTHR33930 4 108 9.6E-52 T 23-04-2016 NIDE_RS00740 29416d15fbe75c06172489d5c008839d 110 PANTHER PTHR33930:SF4 4 108 9.6E-52 T 23-04-2016 NIDE_RS00740 29416d15fbe75c06172489d5c008839d 110 SUPERFAMILY SSF69118 13 101 1.7E-21 T 23-04-2016 IPR029032 AhpD-like NIDE_RS00740 29416d15fbe75c06172489d5c008839d 110 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 38 86 2.1E-8 T 23-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS11770 0cb06869178a98004e1d09a48f5b5e59 238 Gene3D G3DSA:3.40.140.10 109 231 3.3E-45 T 23-04-2016 NIDE_RS11770 0cb06869178a98004e1d09a48f5b5e59 238 SUPERFAMILY SSF47781 24 96 1.3E-7 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 NIDE_RS11770 0cb06869178a98004e1d09a48f5b5e59 238 TIGRFAM TIGR00608 radc: DNA repair protein RadC 18 231 1.4E-67 T 23-04-2016 IPR001405 RadC protein NIDE_RS11770 0cb06869178a98004e1d09a48f5b5e59 238 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 180 185 - T 23-04-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site NIDE_RS11770 0cb06869178a98004e1d09a48f5b5e59 238 PANTHER PTHR30471:SF3 5 231 5.8E-105 T 23-04-2016 NIDE_RS11770 0cb06869178a98004e1d09a48f5b5e59 238 Gene3D G3DSA:1.10.150.20 58 92 4.1E-4 T 23-04-2016 NIDE_RS11770 0cb06869178a98004e1d09a48f5b5e59 238 PANTHER PTHR30471 5 231 5.8E-105 T 23-04-2016 NIDE_RS11770 0cb06869178a98004e1d09a48f5b5e59 238 Pfam PF04002 RadC-like JAB domain 110 229 1.3E-42 T 23-04-2016 IPR025657 RadC-like JAB domain NIDE_RS16925 876ab0a764f64b7a4f22dbe30cde974d 174 Pfam PF00355 Rieske [2Fe-2S] domain 86 145 1.9E-8 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS16925 876ab0a764f64b7a4f22dbe30cde974d 174 Gene3D G3DSA:2.102.10.10 47 168 6.4E-24 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS16925 876ab0a764f64b7a4f22dbe30cde974d 174 TIGRFAM TIGR02694 arsenite_ox_S: arsenite oxidase, small subunit 44 172 1.1E-45 T 23-04-2016 IPR014067 Arsenite oxidase, small subunit MetaCyc: PWY-7429 NIDE_RS16925 876ab0a764f64b7a4f22dbe30cde974d 174 SUPERFAMILY SSF50022 45 155 7.73E-22 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS00885 3a1f2503332aa50c787bea9f96fa1f8b 262 Gene3D G3DSA:3.90.1580.10 20 257 2.3E-69 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS00885 3a1f2503332aa50c787bea9f96fa1f8b 262 PANTHER PTHR23150 30 257 4.2E-66 T 23-04-2016 NIDE_RS00885 3a1f2503332aa50c787bea9f96fa1f8b 262 SUPERFAMILY SSF56436 26 256 2.07E-69 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS00885 3a1f2503332aa50c787bea9f96fa1f8b 262 Pfam PF03781 Sulfatase-modifying factor enzyme 1 30 256 1.2E-56 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 314 49.928 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 Gene3D G3DSA:3.90.226.10 54 270 4.9E-51 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 SUPERFAMILY SSF52096 4 313 1.79E-101 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 3 314 1.1E-138 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 PANTHER PTHR22855 4 314 6.2E-126 T 23-04-2016 NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 PANTHER PTHR22855:SF42 4 314 6.2E-126 T 23-04-2016 NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 111 129 4.6E-46 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 195 204 4.6E-46 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 167 180 4.6E-46 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 86 97 4.6E-46 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 132 148 4.6E-46 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 151 164 4.6E-46 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS11850 8b1a23cd16e84881fe1f0b5f5b498f7f 322 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 4 146 3.4E-64 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS15500 3bfc1adab52abd2d4172a04170083e18 366 Gene3D G3DSA:3.90.1200.10 125 361 7.9E-52 T 23-04-2016 NIDE_RS15500 3bfc1adab52abd2d4172a04170083e18 366 SUPERFAMILY SSF56112 16 351 2.95E-40 T 23-04-2016 IPR011009 Protein kinase-like domain NIDE_RS15500 3bfc1adab52abd2d4172a04170083e18 366 Gene3D G3DSA:3.30.200.20 34 123 2.6E-15 T 23-04-2016 NIDE_RS15500 3bfc1adab52abd2d4172a04170083e18 366 Pfam PF01636 Phosphotransferase enzyme family 38 287 1.4E-28 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase NIDE_RS15500 3bfc1adab52abd2d4172a04170083e18 366 PANTHER PTHR33540:SF1 25 71 1.7E-35 T 23-04-2016 NIDE_RS15500 3bfc1adab52abd2d4172a04170083e18 366 PANTHER PTHR33540:SF1 91 366 1.7E-35 T 23-04-2016 NIDE_RS15500 3bfc1adab52abd2d4172a04170083e18 366 PANTHER PTHR33540 25 71 1.7E-35 T 23-04-2016 NIDE_RS15500 3bfc1adab52abd2d4172a04170083e18 366 PANTHER PTHR33540 91 366 1.7E-35 T 23-04-2016 NIDE_RS10225 e1c9e6a7e1e17b4ba59875ad4d71b797 120 Pfam PF04965 Gene 25-like lysozyme 20 106 9.0E-16 T 23-04-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD NIDE_RS10225 e1c9e6a7e1e17b4ba59875ad4d71b797 120 PANTHER PTHR35862 1 106 1.3E-25 T 23-04-2016 NIDE_RS10225 e1c9e6a7e1e17b4ba59875ad4d71b797 120 SUPERFAMILY SSF160719 16 113 8.24E-22 T 23-04-2016 NIDE_RS10225 e1c9e6a7e1e17b4ba59875ad4d71b797 120 PANTHER PTHR35862:SF2 1 106 1.3E-25 T 23-04-2016 NIDE_RS10225 e1c9e6a7e1e17b4ba59875ad4d71b797 120 Gene3D G3DSA:3.10.450.40 2 114 3.7E-32 T 23-04-2016 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Pfam PF07719 Tetratricopeptide repeat 572 604 4.2E-5 T 23-04-2016 IPR013105 Tetratricopeptide repeat 2 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 503 536 6.0E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 605 638 0.15 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 435 468 1.1 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 537 570 0.0091 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 164 197 3.0E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 96 129 26.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 367 400 10.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 571 604 0.002 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 130 163 55.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 639 672 11.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 673 706 55.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 198 231 36.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 28 61 37.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 333 366 0.11 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SMART SM00028 299 332 91.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Gene3D G3DSA:1.25.40.10 265 493 9.0E-36 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SUPERFAMILY SSF48452 33 256 2.66E-25 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Pfam PF07721 Tetratricopeptide repeat 233 255 0.51 T 23-04-2016 IPR011717 Tetratricopeptide TPR-4 GO:0042802 UniPathway: UPA00694 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 PANTHER PTHR23083 346 400 1.2E-79 T 23-04-2016 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 PANTHER PTHR23083 68 244 1.2E-79 T 23-04-2016 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 PANTHER PTHR23083 499 702 1.2E-79 T 23-04-2016 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 PANTHER PTHR23083 435 464 1.2E-79 T 23-04-2016 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Gene3D G3DSA:1.25.40.10 21 255 1.3E-42 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Gene3D G3DSA:1.25.40.10 494 706 3.0E-47 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Pfam PF13414 TPR repeat 35 72 1.9E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Pfam PF13414 TPR repeat 340 380 9.1E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SUPERFAMILY SSF48452 416 702 5.18E-41 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 617 698 2.0E-7 T 23-04-2016 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Pfam PF13432 Tetratricopeptide repeat 509 565 2.3E-9 T 23-04-2016 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Pfam PF13432 Tetratricopeptide repeat 168 231 8.8E-8 T 23-04-2016 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 Pfam PF13432 Tetratricopeptide repeat 103 161 5.0E-5 T 23-04-2016 NIDE_RS17390 dda3ed5f4d2dea3e9ee00a137915f668 723 SUPERFAMILY SSF48452 200 425 1.01E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20530 4c1c443050d3aa6070d97facddcd6120 213 SUPERFAMILY SSF53901 2 191 5.08E-9 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 NIDE_RS15770 07080b732f58eb614c15e540efd956ca 277 SUPERFAMILY SSF48452 89 243 3.48E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15770 07080b732f58eb614c15e540efd956ca 277 Pfam PF13525 Outer membrane lipoprotein 88 230 9.1E-9 T 23-04-2016 NIDE_RS15770 07080b732f58eb614c15e540efd956ca 277 Gene3D G3DSA:1.25.40.10 88 219 2.9E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS00345 d23b98da656d315123a934d887a36e03 150 Pfam PF11149 Protein of unknown function (DUF2924) 10 143 4.2E-49 T 23-04-2016 IPR021322 Protein of unknown function DUF2924 NIDE_RS13365 e7e4c788148c53f673a793bbb327bb06 97 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 6.2E-19 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 NIDE_RS13365 e7e4c788148c53f673a793bbb327bb06 97 PANTHER PTHR15004 1 94 1.5E-29 T 23-04-2016 NIDE_RS13365 e7e4c788148c53f673a793bbb327bb06 97 PANTHER PTHR15004:SF0 1 94 1.5E-29 T 23-04-2016 NIDE_RS13365 e7e4c788148c53f673a793bbb327bb06 97 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 94 5.4E-27 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 NIDE_RS13365 e7e4c788148c53f673a793bbb327bb06 97 SUPERFAMILY SSF141000 3 93 7.59E-28 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 NIDE_RS13365 e7e4c788148c53f673a793bbb327bb06 97 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 21.344 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 NIDE_RS14910 3b936e2795a4e0d5dc603fff27ea044e 568 PANTHER PTHR30255 1 568 6.3E-224 T 23-04-2016 NIDE_RS14910 3b936e2795a4e0d5dc603fff27ea044e 568 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 26 560 1.2E-162 T 23-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 NIDE_RS14910 3b936e2795a4e0d5dc603fff27ea044e 568 SUPERFAMILY SSF64182 55 451 2.88E-115 T 23-04-2016 NIDE_RS14910 3b936e2795a4e0d5dc603fff27ea044e 568 PANTHER PTHR30255:SF2 1 568 6.3E-224 T 23-04-2016 NIDE_RS14910 3b936e2795a4e0d5dc603fff27ea044e 568 Pfam PF01368 DHH family 81 210 2.3E-10 T 23-04-2016 IPR001667 DDH domain NIDE_RS14910 3b936e2795a4e0d5dc603fff27ea044e 568 Pfam PF02272 DHHA1 domain 372 435 2.3E-10 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 NIDE_RS12300 802465c16578ad288ecaae2f3abbec9c 680 PANTHER PTHR10366 284 549 4.4E-117 T 23-04-2016 NIDE_RS12300 802465c16578ad288ecaae2f3abbec9c 680 PANTHER PTHR10366:SF256 284 549 4.4E-117 T 23-04-2016 NIDE_RS12300 802465c16578ad288ecaae2f3abbec9c 680 SUPERFAMILY SSF51735 282 544 7.37E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12300 802465c16578ad288ecaae2f3abbec9c 680 Gene3D G3DSA:3.90.25.10 463 543 1.9E-6 T 23-04-2016 NIDE_RS12300 802465c16578ad288ecaae2f3abbec9c 680 Pfam PF02719 Polysaccharide biosynthesis protein 285 567 7.0E-114 T 23-04-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain NIDE_RS12300 802465c16578ad288ecaae2f3abbec9c 680 Pfam PF13727 CoA-binding domain 91 240 9.1E-12 T 23-04-2016 NIDE_RS12300 802465c16578ad288ecaae2f3abbec9c 680 Gene3D G3DSA:3.40.50.720 283 462 6.1E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12300 802465c16578ad288ecaae2f3abbec9c 680 SUPERFAMILY SSF51735 141 272 5.51E-20 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12300 802465c16578ad288ecaae2f3abbec9c 680 Gene3D G3DSA:3.40.50.720 138 231 4.0E-14 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS12580 b2bac41ad7ed8cb971d4b64a0f1eaa71 130 PANTHER PTHR11911 1 121 5.8E-23 T 23-04-2016 NIDE_RS12580 b2bac41ad7ed8cb971d4b64a0f1eaa71 130 SMART SM00116 13 60 2.6E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS12580 b2bac41ad7ed8cb971d4b64a0f1eaa71 130 SMART SM00116 78 125 1.8E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS12580 b2bac41ad7ed8cb971d4b64a0f1eaa71 130 SUPERFAMILY SSF54631 2 121 2.78E-29 T 23-04-2016 NIDE_RS12580 b2bac41ad7ed8cb971d4b64a0f1eaa71 130 Gene3D G3DSA:3.10.580.10 3 121 2.0E-29 T 23-04-2016 NIDE_RS12580 b2bac41ad7ed8cb971d4b64a0f1eaa71 130 Pfam PF00571 CBS domain 71 124 1.8E-10 T 23-04-2016 IPR000644 CBS domain NIDE_RS12580 b2bac41ad7ed8cb971d4b64a0f1eaa71 130 Pfam PF00571 CBS domain 5 59 2.5E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS09365 76c414d64814828dd7b1559dde4167e3 185 Pfam PF13036 Peptidoglycan-synthase activator LpoB 81 153 3.0E-5 T 23-04-2016 IPR014094 Penicillin-binding protein activator LpoB NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 Gene3D G3DSA:3.30.450.40 252 434 2.5E-23 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 SUPERFAMILY SSF47384 432 517 3.34E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 PANTHER PTHR24423 419 470 1.4E-46 T 23-04-2016 NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 PANTHER PTHR24423 487 684 1.4E-46 T 23-04-2016 NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 PANTHER PTHR24423 3 29 1.4E-46 T 23-04-2016 NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 569 674 4.5E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 Gene3D G3DSA:1.10.287.130 436 517 1.2E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 SUPERFAMILY SSF55781 276 431 2.84E-20 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 655 5.8E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 607 621 5.8E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 674 5.8E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 SUPERFAMILY SSF55874 525 673 6.02E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 SMART SM00387 568 677 2.3E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 Pfam PF13185 GAF domain 274 411 2.8E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 SMART SM00065 274 428 2.6E-5 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS12050 bdd4d6f55506022d9fdf7536fd2a6b81 686 Gene3D G3DSA:3.30.565.10 525 674 9.3E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 PANTHER PTHR24421:SF21 3 344 8.8E-153 T 23-04-2016 NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 Gene3D G3DSA:3.40.50.2300 2 111 3.2E-28 T 23-04-2016 NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 SMART SM00448 4 116 1.3E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 Pfam PF00072 Response regulator receiver domain 6 108 5.1E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 Gene3D G3DSA:3.40.50.180 157 347 2.0E-82 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 PIRSF PIRSF000876 1 349 1.4E-138 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 SUPERFAMILY SSF52172 2 108 4.41E-27 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 347 41.684 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 SUPERFAMILY SSF52738 160 347 2.62E-73 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 Pfam PF01339 CheB methylesterase 164 342 1.3E-60 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 NIDE_RS10865 4c2be766b8bae0f3611cb8872349f811 349 PANTHER PTHR24421 3 344 8.8E-153 T 23-04-2016 NIDE_RS14505 bd7dc14fe7bcf6360cfc2bf3e4ed4f00 627 Pfam PF02705 K+ potassium transporter 16 549 1.2E-200 T 23-04-2016 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 NIDE_RS14505 bd7dc14fe7bcf6360cfc2bf3e4ed4f00 627 PANTHER PTHR30540 12 558 1.7E-216 T 23-04-2016 NIDE_RS14505 bd7dc14fe7bcf6360cfc2bf3e4ed4f00 627 PANTHER PTHR30540:SF7 12 558 1.7E-216 T 23-04-2016 NIDE_RS14505 bd7dc14fe7bcf6360cfc2bf3e4ed4f00 627 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 7 627 32.886 T 23-04-2016 IPR023051 Potassium uptake protein, low affinity, Kup NIDE_RS08115 575ae72924ad8ea5539820efba6b0eb6 419 Gene3D G3DSA:1.20.1600.10 33 416 7.0E-64 T 23-04-2016 NIDE_RS08115 575ae72924ad8ea5539820efba6b0eb6 419 Pfam PF02321 Outer membrane efflux protein 242 416 8.6E-24 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS08115 575ae72924ad8ea5539820efba6b0eb6 419 Pfam PF02321 Outer membrane efflux protein 39 217 5.0E-25 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS08115 575ae72924ad8ea5539820efba6b0eb6 419 PANTHER PTHR30203 36 419 6.5E-58 T 23-04-2016 NIDE_RS08115 575ae72924ad8ea5539820efba6b0eb6 419 PANTHER PTHR30203:SF1 36 419 6.5E-58 T 23-04-2016 NIDE_RS08115 575ae72924ad8ea5539820efba6b0eb6 419 SUPERFAMILY SSF56954 7 416 6.41E-75 T 23-04-2016 NIDE_RS06240 25235ffbb839dafd89f73adc1a7c99ae 71 Gene3D G3DSA:1.10.1660.10 13 62 9.4E-11 T 23-04-2016 NIDE_RS06240 25235ffbb839dafd89f73adc1a7c99ae 71 Pfam PF13411 MerR HTH family regulatory protein 13 62 5.1E-10 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 NIDE_RS06240 25235ffbb839dafd89f73adc1a7c99ae 71 SUPERFAMILY SSF46955 13 63 2.06E-11 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 Pfam PF13646 HEAT repeats 6 88 3.7E-13 T 23-04-2016 NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 Pfam PF13646 HEAT repeats 97 181 4.9E-18 T 23-04-2016 NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 Pfam PF13646 HEAT repeats 189 271 8.2E-16 T 23-04-2016 NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 PANTHER PTHR12697 316 347 2.5E-38 T 23-04-2016 NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 PANTHER PTHR12697 3 299 2.5E-38 T 23-04-2016 NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 PANTHER PTHR12697:SF5 316 347 2.5E-38 T 23-04-2016 NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 PANTHER PTHR12697:SF5 3 299 2.5E-38 T 23-04-2016 NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SUPERFAMILY SSF48371 316 417 1.03E-46 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SUPERFAMILY SSF48371 4 270 1.03E-46 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SMART SM00567 E-Z type HEAT repeats 273 301 0.62 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SMART SM00567 E-Z type HEAT repeats 109 138 0.035 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SMART SM00567 E-Z type HEAT repeats 201 241 0.023 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SMART SM00567 E-Z type HEAT repeats 17 46 1.1 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SMART SM00567 E-Z type HEAT repeats 349 376 39.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SMART SM00567 E-Z type HEAT repeats 243 272 0.0013 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SMART SM00567 E-Z type HEAT repeats 319 348 3.7E-4 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SMART SM00567 E-Z type HEAT repeats 171 199 57.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SMART SM00567 E-Z type HEAT repeats 140 169 4.2E-6 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 SMART SM00567 E-Z type HEAT repeats 48 77 0.56 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 Pfam PF03130 PBS lyase HEAT-like repeat 323 347 0.0012 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 Pfam PF03130 PBS lyase HEAT-like repeat 274 299 0.0033 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 Gene3D G3DSA:1.25.10.10 124 378 1.6E-57 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS18930 3342000d99c5d03187a6acf0d4f782c5 456 Gene3D G3DSA:1.25.10.10 3 123 6.5E-25 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS19865 3a2942d6cebb42a8f3739b066b3b94d9 205 Pfam PF01464 Transglycosylase SLT domain 57 156 1.1E-26 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 NIDE_RS19865 3a2942d6cebb42a8f3739b066b3b94d9 205 SUPERFAMILY SSF53955 47 178 1.93E-41 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS19865 3a2942d6cebb42a8f3739b066b3b94d9 205 Gene3D G3DSA:1.10.530.10 52 177 4.3E-43 T 23-04-2016 NIDE_RS19865 3a2942d6cebb42a8f3739b066b3b94d9 205 PANTHER PTHR21666 37 179 6.3E-36 T 23-04-2016 NIDE_RS02265 cbabab65a1a41992909998ea4e4aff5a 232 SMART SM00987 46 218 1.5E-27 T 23-04-2016 NIDE_RS02265 cbabab65a1a41992909998ea4e4aff5a 232 PANTHER PTHR33693 4 223 1.6E-78 T 23-04-2016 NIDE_RS02265 cbabab65a1a41992909998ea4e4aff5a 232 Pfam PF03167 Uracil DNA glycosylase superfamily 46 218 6.0E-31 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS02265 cbabab65a1a41992909998ea4e4aff5a 232 SUPERFAMILY SSF52141 14 225 7.52E-48 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS02265 cbabab65a1a41992909998ea4e4aff5a 232 SMART SM00986 46 218 1.5E-27 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS02265 cbabab65a1a41992909998ea4e4aff5a 232 PANTHER PTHR33693:SF2 4 223 1.6E-78 T 23-04-2016 NIDE_RS02265 cbabab65a1a41992909998ea4e4aff5a 232 Gene3D G3DSA:3.40.470.10 6 223 1.5E-55 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like NIDE_RS12635 d712a7fbab0a40324d67e6320a4cf81a 162 SUPERFAMILY SSF103256 14 141 1.28E-38 T 23-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 NIDE_RS12635 d712a7fbab0a40324d67e6320a4cf81a 162 PANTHER PTHR15160 31 137 1.5E-25 T 23-04-2016 NIDE_RS12635 d712a7fbab0a40324d67e6320a4cf81a 162 Pfam PF02577 Bifunctional nuclease 18 140 4.0E-40 T 23-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 NIDE_RS18350 298e052d42b1bcaab945dceb71346e12 119 PANTHER PTHR10072 8 118 2.3E-47 T 23-04-2016 NIDE_RS18350 298e052d42b1bcaab945dceb71346e12 119 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 14 118 1.8E-37 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 NIDE_RS18350 298e052d42b1bcaab945dceb71346e12 119 SUPERFAMILY SSF89360 13 107 8.63E-31 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS18350 298e052d42b1bcaab945dceb71346e12 119 Gene3D G3DSA:2.60.300.12 14 108 1.9E-32 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS18350 298e052d42b1bcaab945dceb71346e12 119 Pfam PF01521 Iron-sulphur cluster biosynthesis 14 115 1.3E-22 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS18350 298e052d42b1bcaab945dceb71346e12 119 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 100 117 - T 23-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site NIDE_RS17010 31c51183094ea0cb074d8c61ffa66443 259 PANTHER PTHR36303:SF1 2 259 6.0E-128 T 23-04-2016 NIDE_RS17010 31c51183094ea0cb074d8c61ffa66443 259 Pfam PF13277 YmdB-like protein 4 255 1.8E-106 T 23-04-2016 IPR005235 Metallophosphoesterase, YmdB-like NIDE_RS17010 31c51183094ea0cb074d8c61ffa66443 259 PIRSF PIRSF004789 1 259 5.4E-98 T 23-04-2016 IPR005235 Metallophosphoesterase, YmdB-like NIDE_RS17010 31c51183094ea0cb074d8c61ffa66443 259 PANTHER PTHR36303 2 259 6.0E-128 T 23-04-2016 NIDE_RS17010 31c51183094ea0cb074d8c61ffa66443 259 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 259 1.8E-84 T 23-04-2016 IPR005235 Metallophosphoesterase, YmdB-like NIDE_RS17010 31c51183094ea0cb074d8c61ffa66443 259 SUPERFAMILY SSF56300 1 257 3.17E-84 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like NIDE_RS17010 31c51183094ea0cb074d8c61ffa66443 259 Gene3D G3DSA:3.60.21.30 1 257 1.6E-112 T 23-04-2016 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 Gene3D G3DSA:1.10.580.10 397 478 8.7E-8 T 23-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 Pfam PF00285 Citrate synthase, C-terminal domain 399 586 3.1E-26 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 SUPERFAMILY SSF51735 1 136 2.49E-12 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 PANTHER PTHR23118 25 602 3.2E-155 T 23-04-2016 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 Gene3D G3DSA:3.40.50.261 136 314 2.2E-42 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 PRINTS PR01798 Succinyl-CoA synthase signature 230 243 6.7E-16 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 PRINTS PR01798 Succinyl-CoA synthase signature 266 283 6.7E-16 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 PRINTS PR01798 Succinyl-CoA synthase signature 199 217 6.7E-16 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 PRINTS PR01798 Succinyl-CoA synthase signature 96 113 6.7E-16 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 SUPERFAMILY SSF48256 189 252 1.26E-55 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 SUPERFAMILY SSF48256 291 598 1.26E-55 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 Gene3D G3DSA:1.10.230.10 479 549 3.0E-11 T 23-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 Gene3D G3DSA:3.40.50.720 2 135 5.2E-24 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 PANTHER PTHR23118:SF8 25 602 3.2E-155 T 23-04-2016 NIDE_RS03840 b49c1b7070ccd768b40776ed55f73b0c 606 Pfam PF00549 CoA-ligase 175 270 2.1E-7 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 NIDE_RS13380 e6f7fcd5ac4b26c702974f395a9495da 224 PANTHER PTHR31876 1 196 1.2E-52 T 23-04-2016 NIDE_RS13380 e6f7fcd5ac4b26c702974f395a9495da 224 PANTHER PTHR31876:SF1 1 196 1.2E-52 T 23-04-2016 NIDE_RS13380 e6f7fcd5ac4b26c702974f395a9495da 224 Pfam PF04367 Protein of unknown function (DUF502) 59 163 4.9E-33 T 23-04-2016 IPR007462 Protein of unknown function DUF502 NIDE_RS07725 8ab3d0ee7955c780a0153abac157429e 256 PANTHER PTHR30371:SF0 3 230 2.2E-68 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS07725 8ab3d0ee7955c780a0153abac157429e 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 93 119 7.1E-32 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS07725 8ab3d0ee7955c780a0153abac157429e 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 4 31 7.1E-32 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS07725 8ab3d0ee7955c780a0153abac157429e 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 75 93 7.1E-32 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS07725 8ab3d0ee7955c780a0153abac157429e 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 145 173 7.1E-32 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS07725 8ab3d0ee7955c780a0153abac157429e 256 Pfam PF00902 Sec-independent protein translocase protein (TatC) 8 213 2.8E-59 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS07725 8ab3d0ee7955c780a0153abac157429e 256 PANTHER PTHR30371 3 230 2.2E-68 T 23-04-2016 NIDE_RS07725 8ab3d0ee7955c780a0153abac157429e 256 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 1 230 17.686 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS07725 8ab3d0ee7955c780a0153abac157429e 256 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 5 218 4.2E-54 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 NIDE_RS14320 7238409487a136472d53650bc5925c06 257 PANTHER PTHR23408 12 245 2.3E-71 T 23-04-2016 NIDE_RS14320 7238409487a136472d53650bc5925c06 257 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 25 248 5.0E-81 T 23-04-2016 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 NIDE_RS14320 7238409487a136472d53650bc5925c06 257 Gene3D G3DSA:3.40.50.300 58 246 1.4E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14320 7238409487a136472d53650bc5925c06 257 SUPERFAMILY SSF52540 13 245 2.78E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14320 7238409487a136472d53650bc5925c06 257 Pfam PF03308 ArgK protein 31 248 2.9E-77 T 23-04-2016 NIDE_RS14320 7238409487a136472d53650bc5925c06 257 PANTHER PTHR23408:SF3 12 245 2.3E-71 T 23-04-2016 NIDE_RS14320 7238409487a136472d53650bc5925c06 257 SMART SM00382 57 208 3.2E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS20825 67d44b28e187dabe6df0ede620a895a1 396 SUPERFAMILY SSF51261 209 393 2.09E-44 T 23-04-2016 IPR011055 Duplicated hybrid motif NIDE_RS20825 67d44b28e187dabe6df0ede620a895a1 396 Pfam PF01551 Peptidase family M23 296 389 1.0E-25 T 23-04-2016 IPR016047 Peptidase M23 NIDE_RS20825 67d44b28e187dabe6df0ede620a895a1 396 Gene3D G3DSA:2.70.70.10 251 395 2.9E-38 T 23-04-2016 NIDE_RS20825 67d44b28e187dabe6df0ede620a895a1 396 PANTHER PTHR21666:SF213 31 393 2.5E-48 T 23-04-2016 NIDE_RS20825 67d44b28e187dabe6df0ede620a895a1 396 PANTHER PTHR21666 31 393 2.5E-48 T 23-04-2016 NIDE_RS13545 c414d481a7d4e9260421c469627bf905 384 Gene3D G3DSA:1.10.3290.10 43 305 1.3E-61 T 23-04-2016 IPR003812 Fido domain NIDE_RS13545 c414d481a7d4e9260421c469627bf905 384 SUPERFAMILY SSF140931 107 300 1.7E-45 T 23-04-2016 IPR003812 Fido domain NIDE_RS13545 c414d481a7d4e9260421c469627bf905 384 Pfam PF13784 Fic/DOC family N-terminal 42 123 5.0E-29 T 23-04-2016 IPR025758 Fic/DOC N-terminal NIDE_RS13545 c414d481a7d4e9260421c469627bf905 384 PANTHER PTHR13504 26 384 1.6E-90 T 23-04-2016 NIDE_RS13545 c414d481a7d4e9260421c469627bf905 384 PIRSF PIRSF038925 15 379 5.4E-123 T 23-04-2016 IPR026287 Adenosine monophosphate-protein transferase NIDE_RS13545 c414d481a7d4e9260421c469627bf905 384 Pfam PF02661 Fic/DOC family 129 235 1.2E-20 T 23-04-2016 IPR003812 Fido domain NIDE_RS13545 c414d481a7d4e9260421c469627bf905 384 PANTHER PTHR13504:SF32 26 384 1.6E-90 T 23-04-2016 NIDE_RS13100 0411c39c8d28f03011d28fcd91d84687 395 Gene3D G3DSA:3.40.50.20 2 111 1.8E-9 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS13100 0411c39c8d28f03011d28fcd91d84687 395 Gene3D G3DSA:3.30.470.20 208 313 1.6E-21 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS13100 0411c39c8d28f03011d28fcd91d84687 395 SUPERFAMILY SSF56059 113 310 7.29E-19 T 23-04-2016 NIDE_RS13100 0411c39c8d28f03011d28fcd91d84687 395 Gene3D G3DSA:3.30.1490.20 112 188 6.8E-12 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS07460 7ec0c9af62d1cb4fb5cc2a468c54c995 263 PANTHER PTHR30406 15 263 1.9E-88 T 23-04-2016 NIDE_RS07460 7ec0c9af62d1cb4fb5cc2a468c54c995 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 71 259 1.7E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS07460 7ec0c9af62d1cb4fb5cc2a468c54c995 263 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 13 261 3.9E-83 T 23-04-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 NIDE_RS07460 7ec0c9af62d1cb4fb5cc2a468c54c995 263 PANTHER PTHR30406:SF6 15 263 1.9E-88 T 23-04-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 NIDE_RS07460 7ec0c9af62d1cb4fb5cc2a468c54c995 263 SUPERFAMILY SSF161098 10 262 9.94E-55 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS07460 7ec0c9af62d1cb4fb5cc2a468c54c995 263 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 11 261 8.3E-90 T 23-04-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 NIDE_RS07460 7ec0c9af62d1cb4fb5cc2a468c54c995 263 Gene3D G3DSA:1.10.3720.10 12 262 4.2E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS01130 7d9794a91169c3e58a3240cd6524fab4 383 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 2 321 1.6E-94 T 23-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 NIDE_RS01130 7d9794a91169c3e58a3240cd6524fab4 383 Gene3D G3DSA:3.20.20.300 8 342 4.2E-108 T 23-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 NIDE_RS01130 7d9794a91169c3e58a3240cd6524fab4 383 SUPERFAMILY SSF51445 7 326 1.58E-94 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS01130 7d9794a91169c3e58a3240cd6524fab4 383 PANTHER PTHR30480 1 347 2.3E-133 T 23-04-2016 NIDE_RS01130 7d9794a91169c3e58a3240cd6524fab4 383 PANTHER PTHR30480:SF5 1 347 2.3E-133 T 23-04-2016 NIDE_RS07190 37765ec4fb294feece2295d276e45fa9 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 2.0E-25 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS07190 37765ec4fb294feece2295d276e45fa9 227 SMART SM00448 1 112 8.2E-43 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS07190 37765ec4fb294feece2295d276e45fa9 227 PANTHER PTHR26402:SF316 1 223 2.3E-98 T 23-04-2016 NIDE_RS07190 37765ec4fb294feece2295d276e45fa9 227 SUPERFAMILY SSF52172 1 176 4.83E-41 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS07190 37765ec4fb294feece2295d276e45fa9 227 SMART SM00862 145 220 1.1E-24 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 NIDE_RS07190 37765ec4fb294feece2295d276e45fa9 227 Gene3D G3DSA:1.10.10.10 125 222 1.5E-33 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS07190 37765ec4fb294feece2295d276e45fa9 227 Gene3D G3DSA:3.40.50.2300 1 121 5.8E-41 T 23-04-2016 NIDE_RS07190 37765ec4fb294feece2295d276e45fa9 227 PANTHER PTHR26402 1 223 2.3E-98 T 23-04-2016 NIDE_RS07190 37765ec4fb294feece2295d276e45fa9 227 Pfam PF00072 Response regulator receiver domain 3 112 3.7E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS04310 431ff90a6e12d474407ea4722bfb3184 712 Pfam PF08487 Vault protein inter-alpha-trypsin domain 82 193 1.2E-34 T 23-04-2016 IPR013694 VIT domain NIDE_RS04310 431ff90a6e12d474407ea4722bfb3184 712 TIGRFAM TIGR03788 marine_srt_targ: marine proteobacterial sortase target protein 81 707 9.0E-221 T 23-04-2016 IPR022440 Conserved hypothetical protein CHP03788 NIDE_RS04310 431ff90a6e12d474407ea4722bfb3184 712 Gene3D G3DSA:3.40.50.410 352 524 1.1E-21 T 23-04-2016 IPR002035 von Willebrand factor, type A NIDE_RS04310 431ff90a6e12d474407ea4722bfb3184 712 PANTHER PTHR10338 80 654 2.6E-110 T 23-04-2016 NIDE_RS04310 431ff90a6e12d474407ea4722bfb3184 712 PANTHER PTHR10338:SF95 80 654 2.6E-110 T 23-04-2016 NIDE_RS04310 431ff90a6e12d474407ea4722bfb3184 712 Pfam PF13768 von Willebrand factor type A domain 356 506 4.8E-25 T 23-04-2016 IPR002035 von Willebrand factor, type A NIDE_RS04310 431ff90a6e12d474407ea4722bfb3184 712 SMART SM00609 64 195 1.5E-8 T 23-04-2016 IPR013694 VIT domain NIDE_RS04310 431ff90a6e12d474407ea4722bfb3184 712 SMART SM00327 354 527 5.2E-21 T 23-04-2016 IPR002035 von Willebrand factor, type A NIDE_RS04310 431ff90a6e12d474407ea4722bfb3184 712 SUPERFAMILY SSF53300 354 519 5.11E-31 T 23-04-2016 IPR002035 von Willebrand factor, type A NIDE_RS09035 7cc9bd364b487e0e147bbae9a78c07bf 372 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 8 360 5.4E-91 T 23-04-2016 IPR017740 Type VI secretion system-associated, ImpA NIDE_RS09035 7cc9bd364b487e0e147bbae9a78c07bf 372 PANTHER PTHR37951:SF1 1 368 5.2E-34 T 23-04-2016 NIDE_RS09035 7cc9bd364b487e0e147bbae9a78c07bf 372 Pfam PF06812 ImpA, N-terminal, type VI secretion system 13 134 1.7E-33 T 23-04-2016 IPR010657 ImpA, N-terminal NIDE_RS09035 7cc9bd364b487e0e147bbae9a78c07bf 372 PANTHER PTHR37951 1 368 5.2E-34 T 23-04-2016 NIDE_RS02840 8de0a0eaab79c3b44d7aa948c37a791a 159 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 12 154 1.1E-73 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 NIDE_RS02840 8de0a0eaab79c3b44d7aa948c37a791a 159 Gene3D G3DSA:3.40.50.700 23 151 2.5E-33 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 NIDE_RS02840 8de0a0eaab79c3b44d7aa948c37a791a 159 PANTHER PTHR11995:SF14 4 156 1.8E-95 T 23-04-2016 NIDE_RS02840 8de0a0eaab79c3b44d7aa948c37a791a 159 SUPERFAMILY SSF56770 10 155 1.7E-67 T 23-04-2016 NIDE_RS02840 8de0a0eaab79c3b44d7aa948c37a791a 159 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 39 147 4.7E-23 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 NIDE_RS02840 8de0a0eaab79c3b44d7aa948c37a791a 159 PANTHER PTHR11995 4 156 1.8E-95 T 23-04-2016 NIDE_RS02840 8de0a0eaab79c3b44d7aa948c37a791a 159 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 2 152 44.203 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 NIDE_RS13965 7fd65c90874962b8f33f1ed5ee4dfde6 159 PANTHER PTHR40547 7 141 1.0E-17 T 23-04-2016 NIDE_RS13965 7fd65c90874962b8f33f1ed5ee4dfde6 159 PANTHER PTHR40547:SF1 7 141 1.0E-17 T 23-04-2016 NIDE_RS13965 7fd65c90874962b8f33f1ed5ee4dfde6 159 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 5 142 4.1E-32 T 23-04-2016 IPR018639 Domain of unknown function DUF2062 NIDE_RS03030 4b80238c2af58c5b04beec07e9c8c802 98 PANTHER PTHR34219 4 97 1.2E-12 T 23-04-2016 NIDE_RS03030 4b80238c2af58c5b04beec07e9c8c802 98 Pfam PF03929 PepSY-associated TM region 14 49 4.0E-9 T 23-04-2016 IPR005625 PepSY-associated TM protein NIDE_RS03030 4b80238c2af58c5b04beec07e9c8c802 98 PANTHER PTHR34219:SF3 4 97 1.2E-12 T 23-04-2016 NIDE_RS17525 d5ef3e9d2f684bf790a94b82b062659a 166 SUPERFAMILY SSF54593 1 126 3.99E-19 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS17525 d5ef3e9d2f684bf790a94b82b062659a 166 Gene3D G3DSA:3.10.180.10 9 120 6.6E-17 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS17525 d5ef3e9d2f684bf790a94b82b062659a 166 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 124 1.7E-19 T 23-04-2016 NIDE_RS17915 e59911a1102c1e45182e1fbba64cac81 182 Gene3D G3DSA:1.20.120.520 14 180 1.3E-11 T 23-04-2016 NIDE_RS17915 e59911a1102c1e45182e1fbba64cac81 182 Pfam PF01814 Hemerythrin HHE cation binding domain 15 163 6.0E-12 T 23-04-2016 IPR012312 Haemerythrin-like NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 Pfam PF13646 HEAT repeats 161 230 2.7E-15 T 23-04-2016 NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 Pfam PF13646 HEAT repeats 75 151 1.3E-13 T 23-04-2016 NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SUPERFAMILY SSF48371 11 258 3.25E-37 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SUPERFAMILY SSF48371 306 356 3.25E-37 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SMART SM00567 E-Z type HEAT repeats 311 337 260.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SMART SM00567 E-Z type HEAT repeats 48 76 6.9 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SMART SM00567 E-Z type HEAT repeats 202 231 9.3 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SMART SM00567 E-Z type HEAT repeats 17 46 0.001 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SMART SM00567 E-Z type HEAT repeats 140 168 5.3 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SMART SM00567 E-Z type HEAT repeats 170 199 3.8E-4 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SMART SM00567 E-Z type HEAT repeats 232 260 5.1 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SMART SM00567 E-Z type HEAT repeats 109 138 0.002 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SMART SM00567 E-Z type HEAT repeats 280 309 22.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 SMART SM00567 E-Z type HEAT repeats 78 107 23.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 Pfam PF03130 PBS lyase HEAT-like repeat 19 45 0.05 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 Pfam PF03130 PBS lyase HEAT-like repeat 234 257 0.012 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 PANTHER PTHR12697 9 259 7.1E-33 T 23-04-2016 NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 Gene3D G3DSA:1.25.10.10 285 351 1.6E-7 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 Gene3D G3DSA:1.25.10.10 152 255 1.8E-24 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS21120 3378fd493a477d588608e1d57157e838 360 Gene3D G3DSA:1.25.10.10 3 151 4.2E-33 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 PANTHER PTHR11702 4 322 4.0E-157 T 23-04-2016 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 ProSitePatterns PS00905 GTP1/OBG family signature. 214 227 - T 23-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 PIRSF PIRSF002401 1 342 6.3E-137 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 SUPERFAMILY SSF82051 4 159 1.26E-55 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 162 327 1.8E-12 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 Hamap MF_01454 GTPase Obg [obg]. 3 332 47.548 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 PANTHER PTHR11702:SF3 4 322 4.0E-157 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 4 330 6.9E-140 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 Pfam PF01018 GTP1/OBG 4 159 1.0E-61 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 Gene3D G3DSA:2.70.210.12 3 156 1.2E-58 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 184 202 6.5E-37 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 212 227 6.5E-37 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 229 247 6.5E-37 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 163 183 6.5E-37 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 SUPERFAMILY SSF52540 162 328 5.57E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 Pfam PF01926 50S ribosome-binding GTPase 162 270 3.4E-25 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS05075 185daf59ee6e9f3528f305f8c2f9818c 343 Gene3D G3DSA:3.40.50.300 161 333 1.6E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03060 01ed41c6f0e52743ba7b2db6b170e486 422 Gene3D G3DSA:2.40.50.100 97 130 4.4E-12 T 23-04-2016 NIDE_RS03060 01ed41c6f0e52743ba7b2db6b170e486 422 Gene3D G3DSA:2.40.50.100 219 246 4.4E-12 T 23-04-2016 NIDE_RS03060 01ed41c6f0e52743ba7b2db6b170e486 422 PANTHER PTHR30469:SF15 46 417 4.6E-57 T 23-04-2016 NIDE_RS03060 01ed41c6f0e52743ba7b2db6b170e486 422 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 88 417 5.6E-52 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS03060 01ed41c6f0e52743ba7b2db6b170e486 422 PANTHER PTHR30469 46 417 4.6E-57 T 23-04-2016 NIDE_RS03060 01ed41c6f0e52743ba7b2db6b170e486 422 SUPERFAMILY SSF111369 88 334 8.37E-22 T 23-04-2016 NIDE_RS03060 01ed41c6f0e52743ba7b2db6b170e486 422 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 94 332 2.4E-21 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PANTHER PTHR24322 151 182 9.0E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PANTHER PTHR24322 9 135 9.0E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 Gene3D G3DSA:3.40.50.720 7 279 1.4E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 1.7E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 1.7E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.7E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 SUPERFAMILY SSF51735 7 280 5.98E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 187 2.2E-4 T 23-04-2016 NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 Pfam PF00106 short chain dehydrogenase 7 192 5.8E-44 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 8.8E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 8.8E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 8.8E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 8.8E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 8.8E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PANTHER PTHR24322:SF508 151 182 9.0E-52 T 23-04-2016 NIDE_RS14180 21b78bbf451e4602dad0df28513127a2 287 PANTHER PTHR24322:SF508 9 135 9.0E-52 T 23-04-2016 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 Gene3D G3DSA:3.40.1190.10 102 340 5.9E-84 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 SUPERFAMILY SSF53244 337 495 3.14E-49 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 PANTHER PTHR23135:SF4 14 499 4.1E-204 T 23-04-2016 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 Pfam PF08245 Mur ligase middle domain 111 316 7.0E-55 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 Gene3D G3DSA:3.90.190.20 341 489 3.4E-58 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 SUPERFAMILY SSF53623 102 334 9.94E-75 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 Pfam PF02875 Mur ligase family, glutamate ligase domain 337 422 6.8E-22 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 Gene3D G3DSA:3.40.1390.10 19 100 3.3E-25 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 Pfam PF01225 Mur ligase family, catalytic domain 30 98 2.7E-10 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 495 35.694 T 23-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 SUPERFAMILY SSF63418 2 102 2.09E-22 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 PANTHER PTHR23135 14 499 4.1E-204 T 23-04-2016 NIDE_RS03465 aaa4362269b8909016bebea9761141f3 502 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 26 494 1.4E-161 T 23-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 NIDE_RS17675 4ce5b191ff881735c7b4d42fcbc6ecbe 144 PANTHER PTHR10438 29 144 1.9E-43 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NIDE_RS17675 4ce5b191ff881735c7b4d42fcbc6ecbe 144 TIGRFAM TIGR01068 thioredoxin: thioredoxin 45 142 6.4E-30 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NIDE_RS17675 4ce5b191ff881735c7b4d42fcbc6ecbe 144 Pfam PF00085 Thioredoxin 43 141 3.5E-27 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 NIDE_RS17675 4ce5b191ff881735c7b4d42fcbc6ecbe 144 PANTHER PTHR10438:SF281 29 144 1.9E-43 T 23-04-2016 NIDE_RS17675 4ce5b191ff881735c7b4d42fcbc6ecbe 144 PRINTS PR00421 Thioredoxin family signature 68 77 7.4E-8 T 23-04-2016 NIDE_RS17675 4ce5b191ff881735c7b4d42fcbc6ecbe 144 PRINTS PR00421 Thioredoxin family signature 108 119 7.4E-8 T 23-04-2016 NIDE_RS17675 4ce5b191ff881735c7b4d42fcbc6ecbe 144 PRINTS PR00421 Thioredoxin family signature 60 68 7.4E-8 T 23-04-2016 NIDE_RS17675 4ce5b191ff881735c7b4d42fcbc6ecbe 144 ProSitePatterns PS00194 Thioredoxin family active site. 61 79 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 NIDE_RS17675 4ce5b191ff881735c7b4d42fcbc6ecbe 144 Gene3D G3DSA:3.40.30.10 37 143 1.9E-32 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS17675 4ce5b191ff881735c7b4d42fcbc6ecbe 144 SUPERFAMILY SSF52833 28 142 2.5E-36 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS03120 48bd91d89e9c9ba77a6202649cb1ba07 183 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 7 174 2.0E-26 T 23-04-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 NIDE_RS03120 48bd91d89e9c9ba77a6202649cb1ba07 183 Pfam PF03843 Outer membrane lipoprotein Slp family 18 173 1.3E-46 T 23-04-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 NIDE_RS03120 48bd91d89e9c9ba77a6202649cb1ba07 183 PIRSF PIRSF004982 3 183 4.4E-40 T 23-04-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 NIDE_RS03120 48bd91d89e9c9ba77a6202649cb1ba07 183 PANTHER PTHR37530 1 177 4.8E-35 T 23-04-2016 NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 Gene3D G3DSA:3.40.50.2020 1 159 2.4E-77 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 Gene3D G3DSA:3.40.50.2020 160 287 5.0E-51 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 PANTHER PTHR10210 1 312 8.1E-186 T 23-04-2016 NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 5 121 1.8E-49 T 23-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 PANTHER PTHR10210:SF41 1 312 8.1E-186 T 23-04-2016 NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 5 313 49.858 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 Pfam PF14572 Phosphoribosyl synthetase-associated domain 202 312 3.7E-28 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 SMART SM01400 5 121 3.3E-80 T 23-04-2016 NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 23-04-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 6 312 1.1E-126 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 NIDE_RS03585 2616bc0e1fbc2c1af5db8124d0f82f2d 313 SUPERFAMILY SSF53271 70 304 8.95E-67 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS16575 d0dba29b0d6085899f2682b6ee1f237f 278 PANTHER PTHR11732 1 276 4.0E-78 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta NIDE_RS16575 d0dba29b0d6085899f2682b6ee1f237f 278 Gene3D G3DSA:3.20.20.100 7 274 2.0E-59 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS16575 d0dba29b0d6085899f2682b6ee1f237f 278 PRINTS PR00069 Aldo-keto reductase signature 212 236 2.4E-8 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NIDE_RS16575 d0dba29b0d6085899f2682b6ee1f237f 278 PRINTS PR00069 Aldo-keto reductase signature 31 55 2.4E-8 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NIDE_RS16575 d0dba29b0d6085899f2682b6ee1f237f 278 PRINTS PR00069 Aldo-keto reductase signature 139 156 2.4E-8 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 NIDE_RS16575 d0dba29b0d6085899f2682b6ee1f237f 278 Pfam PF00248 Aldo/keto reductase family 214 276 3.2E-5 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS16575 d0dba29b0d6085899f2682b6ee1f237f 278 Pfam PF00248 Aldo/keto reductase family 16 204 1.5E-25 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS16575 d0dba29b0d6085899f2682b6ee1f237f 278 SUPERFAMILY SSF51430 6 274 7.73E-52 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS16575 d0dba29b0d6085899f2682b6ee1f237f 278 PANTHER PTHR11732:SF198 1 276 4.0E-78 T 23-04-2016 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 SUPERFAMILY SSF118215 29 441 4.97E-69 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 PRINTS PR00173 Glutamate-aspartate symporter signature 176 198 2.1E-29 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 PRINTS PR00173 Glutamate-aspartate symporter signature 331 357 2.1E-29 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 PRINTS PR00173 Glutamate-aspartate symporter signature 393 413 2.1E-29 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 PRINTS PR00173 Glutamate-aspartate symporter signature 265 284 2.1E-29 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 2.1E-29 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 PRINTS PR00173 Glutamate-aspartate symporter signature 71 91 2.1E-29 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 PRINTS PR00173 Glutamate-aspartate symporter signature 366 385 2.1E-29 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 Pfam PF00375 Sodium:dicarboxylate symporter family 29 441 1.4E-79 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 Gene3D G3DSA:1.10.3860.10 23 441 1.2E-79 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS07225 e87009eee3793374d94d08a5e1571ab0 470 PANTHER PTHR11958 9 441 6.0E-57 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 NIDE_RS10615 b3584530560250bd733a021125b07431 464 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 405 462 4.6E-16 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain NIDE_RS10615 b3584530560250bd733a021125b07431 464 PRINTS PR01005 Flagellar hook-associated protein signature 160 184 5.0E-11 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NIDE_RS10615 b3584530560250bd733a021125b07431 464 PRINTS PR01005 Flagellar hook-associated protein signature 52 74 5.0E-11 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NIDE_RS10615 b3584530560250bd733a021125b07431 464 PRINTS PR01005 Flagellar hook-associated protein signature 127 147 5.0E-11 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NIDE_RS10615 b3584530560250bd733a021125b07431 464 PRINTS PR01005 Flagellar hook-associated protein signature 14 37 5.0E-11 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NIDE_RS10615 b3584530560250bd733a021125b07431 464 Pfam PF00460 Flagella basal body rod protein 10 37 3.5E-7 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NIDE_RS10615 b3584530560250bd733a021125b07431 464 SUPERFAMILY SSF64518 146 462 3.01E-24 T 23-04-2016 NIDE_RS10615 b3584530560250bd733a021125b07431 464 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 8 461 4.9E-113 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 NIDE_RS10615 b3584530560250bd733a021125b07431 464 PANTHER PTHR30033 2 464 6.7E-86 T 23-04-2016 NIDE_RS10615 b3584530560250bd733a021125b07431 464 PANTHER PTHR30033:SF1 2 464 6.7E-86 T 23-04-2016 NIDE_RS01800 8087e66916e7bf68e654b9877e3c6fca 257 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 115 143 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 NIDE_RS01800 8087e66916e7bf68e654b9877e3c6fca 257 Pfam PF01464 Transglycosylase SLT domain 100 195 5.3E-25 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 NIDE_RS01800 8087e66916e7bf68e654b9877e3c6fca 257 PANTHER PTHR21666 77 217 8.3E-38 T 23-04-2016 NIDE_RS01800 8087e66916e7bf68e654b9877e3c6fca 257 Gene3D G3DSA:1.10.530.10 86 218 1.4E-45 T 23-04-2016 NIDE_RS01800 8087e66916e7bf68e654b9877e3c6fca 257 SUPERFAMILY SSF53955 91 218 1.97E-44 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS01080 eb555b7fc774b1bb8216dfb31304379e 127 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 10 127 20.427 T 23-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 NIDE_RS01080 eb555b7fc774b1bb8216dfb31304379e 127 PANTHER PTHR11058 3 127 1.5E-49 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 NIDE_RS01080 eb555b7fc774b1bb8216dfb31304379e 127 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 31 126 1.4E-38 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 Pfam PF00561 alpha/beta hydrolase fold 68 307 3.6E-35 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 PRINTS PR00412 Epoxide hydrolase signature 151 164 1.2E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 PRINTS PR00412 Epoxide hydrolase signature 74 92 1.2E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 PRINTS PR00412 Epoxide hydrolase signature 296 318 1.2E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 Gene3D G3DSA:3.40.50.1820 46 320 2.3E-73 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 PANTHER PTHR10992 35 321 9.7E-68 T 23-04-2016 NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 265 279 1.8E-21 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 151 164 1.8E-21 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 108 1.8E-21 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 137 150 1.8E-21 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS05555 12140c9938faf8cc2f38323ec2127942 321 SUPERFAMILY SSF53474 44 320 3.11E-73 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS01120 63bcf66758586ad3b3c062ea60e1a4c7 212 PANTHER PTHR11228 1 205 5.4E-51 T 23-04-2016 NIDE_RS01120 63bcf66758586ad3b3c062ea60e1a4c7 212 SUPERFAMILY SSF102114 24 103 2.22E-11 T 23-04-2016 NIDE_RS01120 63bcf66758586ad3b3c062ea60e1a4c7 212 Pfam PF13394 4Fe-4S single cluster domain 23 104 1.0E-9 T 23-04-2016 NIDE_RS01120 63bcf66758586ad3b3c062ea60e1a4c7 212 Pfam PF04055 Radical SAM superfamily 25 117 3.3E-14 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS01120 63bcf66758586ad3b3c062ea60e1a4c7 212 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 2 206 1.3E-92 T 23-04-2016 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE NIDE_RS01120 63bcf66758586ad3b3c062ea60e1a4c7 212 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 2 208 39.073 T 23-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 NIDE_RS01120 63bcf66758586ad3b3c062ea60e1a4c7 212 Gene3D G3DSA:3.20.20.70 28 100 9.5E-11 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS01120 63bcf66758586ad3b3c062ea60e1a4c7 212 PIRSF PIRSF000370 1 211 2.8E-67 T 23-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 NIDE_RS01120 63bcf66758586ad3b3c062ea60e1a4c7 212 PANTHER PTHR11228:SF6 1 205 5.4E-51 T 23-04-2016 NIDE_RS06070 dff9a9ed8173cf7b581f9931ad355d09 206 PANTHER PTHR11229 4 205 6.4E-91 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06070 dff9a9ed8173cf7b581f9931ad355d09 206 Gene3D G3DSA:4.10.960.10 84 154 7.2E-29 T 23-04-2016 NIDE_RS06070 dff9a9ed8173cf7b581f9931ad355d09 206 Gene3D G3DSA:2.40.30.10 4 32 1.8E-6 T 23-04-2016 NIDE_RS06070 dff9a9ed8173cf7b581f9931ad355d09 206 Gene3D G3DSA:2.40.30.10 155 202 1.8E-6 T 23-04-2016 NIDE_RS06070 dff9a9ed8173cf7b581f9931ad355d09 206 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 201 5.7E-78 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06070 dff9a9ed8173cf7b581f9931ad355d09 206 SUPERFAMILY SSF50447 4 205 3.18E-70 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS06070 dff9a9ed8173cf7b581f9931ad355d09 206 ProSitePatterns PS00474 Ribosomal protein L3 signature. 99 122 - T 23-04-2016 IPR019926 Ribosomal protein L3, conserved site NIDE_RS06070 dff9a9ed8173cf7b581f9931ad355d09 206 Pfam PF00297 Ribosomal protein L3 96 175 3.5E-14 T 23-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06070 dff9a9ed8173cf7b581f9931ad355d09 206 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 204 35.56 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS13930 1942e31f264d1aaed3c765c8a64210bb 151 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 4 144 36.314 T 23-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 NIDE_RS13930 1942e31f264d1aaed3c765c8a64210bb 151 Pfam PF07977 FabA-like domain 13 137 2.9E-38 T 23-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 NIDE_RS13930 1942e31f264d1aaed3c765c8a64210bb 151 PANTHER PTHR30272 1 146 9.3E-76 T 23-04-2016 NIDE_RS13930 1942e31f264d1aaed3c765c8a64210bb 151 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 7 141 5.3E-60 T 23-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 NIDE_RS13930 1942e31f264d1aaed3c765c8a64210bb 151 SUPERFAMILY SSF54637 2 142 6.52E-51 T 23-04-2016 IPR029069 HotDog domain NIDE_RS13930 1942e31f264d1aaed3c765c8a64210bb 151 Gene3D G3DSA:3.10.129.10 2 144 6.7E-58 T 23-04-2016 IPR029069 HotDog domain NIDE_RS06340 08a1bfbf9969a4d45e85b1068452e65d 258 Gene3D G3DSA:3.10.580.10 133 253 3.3E-32 T 23-04-2016 NIDE_RS06340 08a1bfbf9969a4d45e85b1068452e65d 258 SUPERFAMILY SSF54631 133 254 2.91E-30 T 23-04-2016 NIDE_RS06340 08a1bfbf9969a4d45e85b1068452e65d 258 Pfam PF00571 CBS domain 203 252 2.9E-12 T 23-04-2016 IPR000644 CBS domain NIDE_RS06340 08a1bfbf9969a4d45e85b1068452e65d 258 Pfam PF00571 CBS domain 134 185 7.2E-8 T 23-04-2016 IPR000644 CBS domain NIDE_RS06340 08a1bfbf9969a4d45e85b1068452e65d 258 PANTHER PTHR11911 119 251 3.6E-28 T 23-04-2016 NIDE_RS06340 08a1bfbf9969a4d45e85b1068452e65d 258 SMART SM00116 141 188 0.16 T 23-04-2016 IPR000644 CBS domain NIDE_RS06340 08a1bfbf9969a4d45e85b1068452e65d 258 SMART SM00116 206 253 1.6E-8 T 23-04-2016 IPR000644 CBS domain NIDE_RS13505 199b566e42f3830f03fdf40b6bc4a930 752 Pfam PF13091 PLD-like domain 383 520 5.6E-11 T 23-04-2016 IPR025202 Phospholipase D-like domain NIDE_RS13505 199b566e42f3830f03fdf40b6bc4a930 752 SUPERFAMILY SSF56024 313 521 1.21E-22 T 23-04-2016 NIDE_RS13505 199b566e42f3830f03fdf40b6bc4a930 752 SMART SM00155 252 279 14.0 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 NIDE_RS13505 199b566e42f3830f03fdf40b6bc4a930 752 SMART SM00155 483 510 1.4E-4 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 NIDE_RS13505 199b566e42f3830f03fdf40b6bc4a930 752 SUPERFAMILY SSF56024 203 356 8.9E-15 T 23-04-2016 NIDE_RS13505 199b566e42f3830f03fdf40b6bc4a930 752 SUPERFAMILY SSF56024 133 176 8.9E-15 T 23-04-2016 NIDE_RS13505 199b566e42f3830f03fdf40b6bc4a930 752 Gene3D G3DSA:3.30.870.10 377 527 5.1E-19 T 23-04-2016 NIDE_RS13505 199b566e42f3830f03fdf40b6bc4a930 752 Gene3D G3DSA:3.30.870.10 134 343 1.2E-12 T 23-04-2016 NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 SUPERFAMILY SSF63882 9 185 2.62E-51 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 Gene3D G3DSA:2.40.340.10 338 408 4.7E-24 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 Pfam PF00994 Probable molybdopterin binding domain 189 324 5.3E-24 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 PANTHER PTHR10192 10 425 2.3E-160 T 23-04-2016 NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 Pfam PF03454 MoeA C-terminal region (domain IV) 340 410 1.1E-20 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 SMART SM00852 189 326 8.5E-40 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 Gene3D G3DSA:3.90.105.10 141 170 8.1E-16 T 23-04-2016 NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 SUPERFAMILY SSF63867 335 412 2.49E-21 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 SUPERFAMILY SSF53218 186 330 4.19E-37 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 Gene3D G3DSA:3.40.980.10 171 337 6.6E-54 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 Pfam PF03453 MoeA N-terminal region (domain I and II) 13 174 4.6E-35 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 186 322 1.0E-29 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS15270 27fab2504646e60f04a738aa42ed2068 432 Gene3D G3DSA:2.170.190.11 53 140 3.6E-32 T 23-04-2016 NIDE_RS19915 89bcdcb8a59c5ec3d3db81f9781388d6 448 PANTHER PTHR30624:SF8 15 447 4.7E-94 T 23-04-2016 NIDE_RS19915 89bcdcb8a59c5ec3d3db81f9781388d6 448 PANTHER PTHR30624 15 447 4.7E-94 T 23-04-2016 NIDE_RS19915 89bcdcb8a59c5ec3d3db81f9781388d6 448 Pfam PF01523 Putative modulator of DNA gyrase 39 313 2.8E-34 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- NIDE_RS19915 89bcdcb8a59c5ec3d3db81f9781388d6 448 SUPERFAMILY SSF111283 18 442 3.27E-69 T 23-04-2016 NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 SUPERFAMILY SSF53335 19 87 2.05E-91 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 SUPERFAMILY SSF53335 118 464 2.05E-91 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 Pfam PF12161 HsdM N-terminal domain 20 89 8.9E-10 T 23-04-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 Gene3D G3DSA:3.40.50.150 221 449 6.2E-37 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 359 383 3.0E-18 T 23-04-2016 NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 219 235 3.0E-18 T 23-04-2016 NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 243 257 3.0E-18 T 23-04-2016 NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 332 344 3.0E-18 T 23-04-2016 NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 335 341 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 PANTHER PTHR30195:SF2 202 441 7.1E-46 T 23-04-2016 NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 PANTHER PTHR30195 202 441 7.1E-46 T 23-04-2016 NIDE_RS00660 5771f126793e9ca3bb96efc63702b9aa 647 Pfam PF02384 N-6 DNA Methylase 199 456 3.7E-53 T 23-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 NIDE_RS19025 083c9270559a7d272247e8acc03601d6 217 Gene3D G3DSA:3.40.50.1000 61 208 2.0E-30 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19025 083c9270559a7d272247e8acc03601d6 217 PANTHER PTHR18901 1 209 1.0E-33 T 23-04-2016 NIDE_RS19025 083c9270559a7d272247e8acc03601d6 217 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 115 184 3.4E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 NIDE_RS19025 083c9270559a7d272247e8acc03601d6 217 Pfam PF13419 Haloacid dehalogenase-like hydrolase 1 185 1.0E-20 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19025 083c9270559a7d272247e8acc03601d6 217 SUPERFAMILY SSF56784 1 207 9.45E-35 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS20270 bc1e62f1e7b8d5865e5d7873289d3bbd 323 Pfam PF00034 Cytochrome c 22 124 3.6E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS20270 bc1e62f1e7b8d5865e5d7873289d3bbd 323 Pfam PF00034 Cytochrome c 232 309 7.1E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS20270 bc1e62f1e7b8d5865e5d7873289d3bbd 323 SUPERFAMILY SSF46626 16 128 2.29E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS20270 bc1e62f1e7b8d5865e5d7873289d3bbd 323 SUPERFAMILY SSF46626 226 309 6.35E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS20270 bc1e62f1e7b8d5865e5d7873289d3bbd 323 Gene3D G3DSA:1.10.760.10 18 152 1.7E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS20270 bc1e62f1e7b8d5865e5d7873289d3bbd 323 Gene3D G3DSA:1.10.760.10 224 309 5.6E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS08685 c295b1888c52aa5c3321b82c44c81643 91 SUPERFAMILY SSF143011 4 81 5.76E-11 T 23-04-2016 NIDE_RS08685 c295b1888c52aa5c3321b82c44c81643 91 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 15 82 6.5E-6 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NIDE_RS20510 a8dedc73d535c65ecbe1271a46b72302 147 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 6 121 1.4E-28 T 23-04-2016 IPR017734 Type VI secretion system, lipoprotein SciN NIDE_RS20510 a8dedc73d535c65ecbe1271a46b72302 147 PANTHER PTHR37625 15 118 1.2E-16 T 23-04-2016 NIDE_RS20510 a8dedc73d535c65ecbe1271a46b72302 147 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 9 122 6.0E-30 T 23-04-2016 IPR017734 Type VI secretion system, lipoprotein SciN NIDE_RS13360 b58bab47d2946d7c30312d70f427eb50 121 PANTHER PTHR21012 2 116 8.3E-60 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 NIDE_RS13360 b58bab47d2946d7c30312d70f427eb50 121 Gene3D G3DSA:2.40.40.20 1 117 6.1E-49 T 23-04-2016 NIDE_RS13360 b58bab47d2946d7c30312d70f427eb50 121 SUPERFAMILY SSF50692 1 116 1.49E-43 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain NIDE_RS13360 b58bab47d2946d7c30312d70f427eb50 121 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 118 1.7E-44 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 NIDE_RS13360 b58bab47d2946d7c30312d70f427eb50 121 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 120 3.0E-29 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 NIDE_RS13360 b58bab47d2946d7c30312d70f427eb50 121 Pfam PF02261 Aspartate decarboxylase 1 114 1.0E-46 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 NIDE_RS13360 b58bab47d2946d7c30312d70f427eb50 121 PIRSF PIRSF006246 1 121 1.1E-47 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 NIDE_RS13360 b58bab47d2946d7c30312d70f427eb50 121 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 121 60.678 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 NIDE_RS13360 b58bab47d2946d7c30312d70f427eb50 121 PANTHER PTHR21012:SF0 2 116 8.3E-60 T 23-04-2016 NIDE_RS18865 22b91865b2afce963ad68a42e8ab075f 110 SUPERFAMILY SSF141066 17 109 1.06E-7 T 23-04-2016 IPR018990 Proteinase inhibitor I42, chagasin NIDE_RS18865 22b91865b2afce963ad68a42e8ab075f 110 Pfam PF09394 Chagasin family peptidase inhibitor I42 23 109 5.7E-10 T 23-04-2016 IPR018990 Proteinase inhibitor I42, chagasin NIDE_RS18790 b3bb16a244e134ec278aae54b70ce721 147 Gene3D G3DSA:3.40.50.300 3 146 9.6E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18790 b3bb16a244e134ec278aae54b70ce721 147 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 5 125 2.2E-28 T 23-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 NIDE_RS18790 b3bb16a244e134ec278aae54b70ce721 147 PANTHER PTHR33540 1 123 2.0E-33 T 23-04-2016 NIDE_RS18790 b3bb16a244e134ec278aae54b70ce721 147 PANTHER PTHR33540:SF2 1 123 2.0E-33 T 23-04-2016 NIDE_RS18790 b3bb16a244e134ec278aae54b70ce721 147 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 4 124 1.9E-33 T 23-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 NIDE_RS18790 b3bb16a244e134ec278aae54b70ce721 147 SUPERFAMILY SSF52540 20 127 1.09E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07775 bcab2c1b2ac0ed91f013683331e7ce23 393 Gene3D G3DSA:1.20.1250.20 208 388 1.4E-17 T 23-04-2016 NIDE_RS07775 bcab2c1b2ac0ed91f013683331e7ce23 393 Gene3D G3DSA:1.20.1250.20 26 176 1.1E-10 T 23-04-2016 NIDE_RS07775 bcab2c1b2ac0ed91f013683331e7ce23 393 PRINTS PR01988 Putative bacilysin exporter bacE signature 129 150 3.4E-8 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS07775 bcab2c1b2ac0ed91f013683331e7ce23 393 PRINTS PR01988 Putative bacilysin exporter bacE signature 63 81 3.4E-8 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS07775 bcab2c1b2ac0ed91f013683331e7ce23 393 PRINTS PR01988 Putative bacilysin exporter bacE signature 37 55 3.4E-8 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS07775 bcab2c1b2ac0ed91f013683331e7ce23 393 PRINTS PR01988 Putative bacilysin exporter bacE signature 156 173 3.4E-8 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS07775 bcab2c1b2ac0ed91f013683331e7ce23 393 Pfam PF05977 Transmembrane secretion effector 1 376 4.6E-26 T 23-04-2016 IPR010290 Transmembrane secretion effector NIDE_RS07775 bcab2c1b2ac0ed91f013683331e7ce23 393 SUPERFAMILY SSF103473 2 389 2.35E-39 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS07775 bcab2c1b2ac0ed91f013683331e7ce23 393 PANTHER PTHR23513 1 380 2.5E-62 T 23-04-2016 NIDE_RS00285 85609938292c1b955664260f83a636a3 316 PANTHER PTHR30353:SF6 7 306 1.6E-74 T 23-04-2016 NIDE_RS00285 85609938292c1b955664260f83a636a3 316 PANTHER PTHR30353 7 306 1.6E-74 T 23-04-2016 IPR032818 DedA family NIDE_RS00285 85609938292c1b955664260f83a636a3 316 Gene3D G3DSA:3.40.250.10 203 309 5.5E-24 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS00285 85609938292c1b955664260f83a636a3 316 SMART SM00450 206 305 1.6E-14 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS00285 85609938292c1b955664260f83a636a3 316 Pfam PF09335 SNARE associated Golgi protein 28 154 4.4E-13 T 23-04-2016 IPR032816 SNARE associated Golgi protein NIDE_RS00285 85609938292c1b955664260f83a636a3 316 Pfam PF00581 Rhodanese-like domain 206 301 5.1E-11 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS00285 85609938292c1b955664260f83a636a3 316 SUPERFAMILY SSF52821 183 309 1.23E-26 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS12600 e4717769ad477c646c07abf02b3e4f85 268 Pfam PF01578 Cytochrome C assembly protein 66 261 7.8E-33 T 23-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 NIDE_RS12600 e4717769ad477c646c07abf02b3e4f85 268 PANTHER PTHR30071 1 261 1.1E-48 T 23-04-2016 NIDE_RS07615 5629a189d2ec4de8e0314b6f48a7b94c 118 SUPERFAMILY SSF56349 2 105 2.94E-12 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS07615 5629a189d2ec4de8e0314b6f48a7b94c 118 Gene3D G3DSA:1.10.443.10 2 105 1.2E-14 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS07615 5629a189d2ec4de8e0314b6f48a7b94c 118 Pfam PF00589 Phage integrase family 3 86 1.2E-9 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS03685 84b364550512e030b8e5922ebb5148ff 297 PANTHER PTHR10587 12 147 1.1E-27 T 23-04-2016 NIDE_RS03685 84b364550512e030b8e5922ebb5148ff 297 PANTHER PTHR10587:SF85 12 147 1.1E-27 T 23-04-2016 NIDE_RS03685 84b364550512e030b8e5922ebb5148ff 297 Pfam PF01522 Polysaccharide deacetylase 29 130 1.5E-21 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS03685 84b364550512e030b8e5922ebb5148ff 297 TIGRFAM TIGR03006 pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily 3 269 2.1E-102 T 23-04-2016 IPR014344 PEP-CTERM locus, polysaccharide deactylase NIDE_RS03685 84b364550512e030b8e5922ebb5148ff 297 Pfam PF11959 Domain of unknown function (DUF3473) 144 269 2.1E-40 T 23-04-2016 IPR022560 Domain of unknown function DUF3473 NIDE_RS03685 84b364550512e030b8e5922ebb5148ff 297 Gene3D G3DSA:3.20.20.370 3 246 2.7E-51 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS03685 84b364550512e030b8e5922ebb5148ff 297 SUPERFAMILY SSF88713 3 253 8.53E-49 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS14055 5e5ba08766bb94a7f6fe07208cc79a57 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 213 2.8E-85 T 23-04-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 NIDE_RS14055 5e5ba08766bb94a7f6fe07208cc79a57 222 SMART SM00382 26 213 3.7E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS14055 5e5ba08766bb94a7f6fe07208cc79a57 222 PANTHER PTHR24220 3 215 2.9E-105 T 23-04-2016 NIDE_RS14055 5e5ba08766bb94a7f6fe07208cc79a57 222 Pfam PF00005 ABC transporter 17 164 1.5E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS14055 5e5ba08766bb94a7f6fe07208cc79a57 222 Gene3D G3DSA:3.40.50.300 1 217 3.1E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14055 5e5ba08766bb94a7f6fe07208cc79a57 222 PANTHER PTHR24220:SF470 3 215 2.9E-105 T 23-04-2016 NIDE_RS14055 5e5ba08766bb94a7f6fe07208cc79a57 222 SUPERFAMILY SSF52540 1 218 6.75E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14015 178dd1128a0b5367e79ced88cd9913a9 569 Gene3D G3DSA:3.40.50.300 203 419 7.3E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14015 178dd1128a0b5367e79ced88cd9913a9 569 Hamap MF_02112 Proteasome-associated ATPase [mpa]. 41 551 45.185 T 23-04-2016 IPR022482 Proteasome ATPase GO:0000502|GO:0010498|GO:0016887|GO:0019941 NIDE_RS14015 178dd1128a0b5367e79ced88cd9913a9 569 TIGRFAM TIGR03689 pup_AAA: proteasome ATPase 41 550 3.1E-223 T 23-04-2016 IPR022482 Proteasome ATPase GO:0000502|GO:0010498|GO:0016887|GO:0019941 NIDE_RS14015 178dd1128a0b5367e79ced88cd9913a9 569 SMART SM00382 251 404 1.5E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS14015 178dd1128a0b5367e79ced88cd9913a9 569 PANTHER PTHR23077:SF27 206 414 8.5E-80 T 23-04-2016 NIDE_RS14015 178dd1128a0b5367e79ced88cd9913a9 569 PANTHER PTHR23077 206 414 8.5E-80 T 23-04-2016 NIDE_RS14015 178dd1128a0b5367e79ced88cd9913a9 569 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 255 401 9.2E-44 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS14015 178dd1128a0b5367e79ced88cd9913a9 569 ProSitePatterns PS00674 AAA-protein family signature. 372 390 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 NIDE_RS14015 178dd1128a0b5367e79ced88cd9913a9 569 SUPERFAMILY SSF52540 213 451 3.68E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14015 178dd1128a0b5367e79ced88cd9913a9 569 Pfam PF16450 Proteasomal ATPase OB/ID domain 83 212 6.9E-45 T 23-04-2016 IPR032501 Proteasomal ATPase, OB/ID domain NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 715 732 - T 23-04-2016 IPR010917 TonB-dependent receptor, conserved site NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 SUPERFAMILY SSF56935 30 732 7.33E-117 T 23-04-2016 NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 Gene3D G3DSA:2.40.170.20 184 732 2.7E-100 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 67 168 1.2E-21 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 Pfam PF00593 TonB dependent receptor 491 728 5.3E-24 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 69 732 1.1E-69 T 23-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 Gene3D G3DSA:2.170.130.10 27 178 3.2E-34 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 PANTHER PTHR32552 59 732 4.8E-91 T 23-04-2016 NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 PANTHER PTHR32552 17 38 4.8E-91 T 23-04-2016 NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 PANTHER PTHR32552:SF10 59 732 4.8E-91 T 23-04-2016 NIDE_RS02975 223fa5e988b243517b2ab4e4fe445a01 732 PANTHER PTHR32552:SF10 17 38 4.8E-91 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 Pfam PF06455 NADH dehydrogenase subunit 5 C-terminus 437 484 1.1E-6 T 23-04-2016 IPR010934 NADH dehydrogenase subunit 5, C-terminal GO:0008137|GO:0042773|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 427 446 4.9E-70 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 78 103 4.9E-70 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 323 335 4.9E-70 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 233 254 4.9E-70 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 106 126 4.9E-70 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 153 174 4.9E-70 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 255 281 4.9E-70 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PANTHER PTHR22773:SF50 215 583 3.3E-248 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PANTHER PTHR22773:SF50 1 199 3.3E-248 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 629 5.0E-232 T 23-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 80 100 4.3E-18 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 273 295 4.3E-18 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 426 448 4.3E-18 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 54 78 4.3E-18 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PANTHER PTHR22773 215 583 3.3E-248 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 PANTHER PTHR22773 1 199 3.3E-248 T 23-04-2016 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 Pfam PF00361 Proton-conducting membrane transporter 129 425 1.9E-86 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS02795 68f7beda3e4aec227a604481a4ad9c57 632 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 60 116 1.8E-25 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 PANTHER PTHR22939 222 462 6.2E-72 T 23-04-2016 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 Gene3D G3DSA:2.30.42.10 224 301 1.7E-17 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 Gene3D G3DSA:2.30.42.10 106 212 2.9E-21 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 PANTHER PTHR22939:SF78 222 462 6.2E-72 T 23-04-2016 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 SUPERFAMILY SSF50156 111 212 1.84E-18 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 SMART SM00228 131 203 4.5E-10 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 SMART SM00228 227 292 1.6E-6 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 Pfam PF02163 Peptidase family M50 22 447 6.1E-86 T 23-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 19 461 2.6E-102 T 23-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 SUPERFAMILY SSF50156 234 301 2.5E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 Pfam PF13180 PDZ domain 149 210 5.8E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS06975 7d88458c46a52098a201c9750d34a857 463 Pfam PF13180 PDZ domain 234 300 1.5E-8 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS17760 8617730ec85aa627e2b3f87c019247e5 138 PANTHER PTHR30437 1 136 1.1E-53 T 23-04-2016 NIDE_RS17760 8617730ec85aa627e2b3f87c019247e5 138 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 53 128 2.6E-24 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 NIDE_RS17760 8617730ec85aa627e2b3f87c019247e5 138 PANTHER PTHR30437:SF5 1 136 1.1E-53 T 23-04-2016 NIDE_RS17760 8617730ec85aa627e2b3f87c019247e5 138 Gene3D G3DSA:3.10.50.30 48 137 6.6E-31 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 NIDE_RS17760 8617730ec85aa627e2b3f87c019247e5 138 SUPERFAMILY SSF54534 52 129 3.01E-20 T 23-04-2016 NIDE_RS17760 8617730ec85aa627e2b3f87c019247e5 138 Gene3D G3DSA:1.10.286.20 4 47 3.8E-5 T 23-04-2016 NIDE_RS17760 8617730ec85aa627e2b3f87c019247e5 138 Pfam PF14760 Rnk N-terminus 4 47 1.4E-12 T 23-04-2016 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain NIDE_RS12910 1b0e564eb72b1ca11524235cda9633af 150 PANTHER PTHR12231 61 150 3.1E-12 T 23-04-2016 NIDE_RS12910 1b0e564eb72b1ca11524235cda9633af 150 SMART SM00450 44 147 8.5E-18 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS12910 1b0e564eb72b1ca11524235cda9633af 150 Pfam PF00581 Rhodanese-like domain 50 143 3.5E-13 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS12910 1b0e564eb72b1ca11524235cda9633af 150 Gene3D G3DSA:3.40.250.10 32 149 2.6E-27 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS12910 1b0e564eb72b1ca11524235cda9633af 150 SUPERFAMILY SSF52821 24 150 2.62E-29 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS12910 1b0e564eb72b1ca11524235cda9633af 150 ProSitePatterns PS00380 Rhodanese signature 1. 70 81 - T 23-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 NIDE_RS04135 6a184abc29fe875a728c8ac8e25d3c51 312 Pfam PF00355 Rieske [2Fe-2S] domain 222 282 3.6E-11 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS04135 6a184abc29fe875a728c8ac8e25d3c51 312 Gene3D G3DSA:2.102.10.10 178 301 2.5E-25 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS04135 6a184abc29fe875a728c8ac8e25d3c51 312 Gene3D G3DSA:2.102.10.10 113 130 2.5E-25 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS04135 6a184abc29fe875a728c8ac8e25d3c51 312 SUPERFAMILY SSF50022 138 297 7.44E-20 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS04135 6a184abc29fe875a728c8ac8e25d3c51 312 SUPERFAMILY SSF50346 10 84 6.87E-7 T 23-04-2016 IPR011033 PRC-barrel-like NIDE_RS04135 6a184abc29fe875a728c8ac8e25d3c51 312 PRINTS PR00162 Rieske 2Fe-2S subunit signature 269 281 5.1E-8 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 NIDE_RS04135 6a184abc29fe875a728c8ac8e25d3c51 312 PRINTS PR00162 Rieske 2Fe-2S subunit signature 233 244 5.1E-8 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 NIDE_RS04135 6a184abc29fe875a728c8ac8e25d3c51 312 PRINTS PR00162 Rieske 2Fe-2S subunit signature 257 269 5.1E-8 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 NIDE_RS10060 72945357dca5d8ce2a93b007aeced79d 618 Gene3D G3DSA:1.25.10.10 369 601 2.8E-15 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS10060 72945357dca5d8ce2a93b007aeced79d 618 SUPERFAMILY SSF48371 369 556 9.22E-13 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS16175 6223aadf0d032a6f6ec9b002ceeaa9bc 219 PANTHER PTHR30212:SF2 7 219 6.5E-70 T 23-04-2016 NIDE_RS16175 6223aadf0d032a6f6ec9b002ceeaa9bc 219 PANTHER PTHR30212 7 219 6.5E-70 T 23-04-2016 NIDE_RS16175 6223aadf0d032a6f6ec9b002ceeaa9bc 219 SUPERFAMILY SSF50800 6 218 7.85E-67 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain NIDE_RS16175 6223aadf0d032a6f6ec9b002ceeaa9bc 219 Pfam PF03475 3-alpha domain 181 218 3.3E-9 T 23-04-2016 IPR005163 3-alpha domain NIDE_RS16175 6223aadf0d032a6f6ec9b002ceeaa9bc 219 Gene3D G3DSA:2.40.33.20 4 218 5.2E-78 T 23-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like NIDE_RS16175 6223aadf0d032a6f6ec9b002ceeaa9bc 219 Pfam PF03473 MOSC domain 60 171 1.8E-22 T 23-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 NIDE_RS03075 f5ab5e0908c4f24b2a495486f998e0fe 389 PANTHER PTHR30572 6 387 8.6E-98 T 23-04-2016 NIDE_RS03075 f5ab5e0908c4f24b2a495486f998e0fe 389 Pfam PF02687 FtsX-like permease family 260 379 1.8E-14 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS03075 f5ab5e0908c4f24b2a495486f998e0fe 389 PANTHER PTHR30572:SF12 6 387 8.6E-98 T 23-04-2016 NIDE_RS03075 f5ab5e0908c4f24b2a495486f998e0fe 389 Pfam PF12704 MacB-like periplasmic core domain 18 226 3.6E-15 T 23-04-2016 IPR025857 MacB-like periplasmic core domain NIDE_RS12765 3133d7e0a7d43117c351e43888f5fb0b 632 Pfam PF04055 Radical SAM superfamily 353 515 1.4E-12 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS12765 3133d7e0a7d43117c351e43888f5fb0b 632 SUPERFAMILY SSF52242 215 313 9.22E-7 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS12765 3133d7e0a7d43117c351e43888f5fb0b 632 SUPERFAMILY SSF102114 315 545 7.98E-30 T 23-04-2016 NIDE_RS12765 3133d7e0a7d43117c351e43888f5fb0b 632 PANTHER PTHR11918:SF64 82 517 1.5E-40 T 23-04-2016 NIDE_RS12765 3133d7e0a7d43117c351e43888f5fb0b 632 Gene3D G3DSA:3.80.30.20 354 541 5.6E-25 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS12765 3133d7e0a7d43117c351e43888f5fb0b 632 PANTHER PTHR11918 82 517 1.5E-40 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS12765 3133d7e0a7d43117c351e43888f5fb0b 632 Pfam PF02310 B12 binding domain 200 291 1.1E-9 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS12765 3133d7e0a7d43117c351e43888f5fb0b 632 Gene3D G3DSA:3.40.50.280 215 291 5.9E-5 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS12765 3133d7e0a7d43117c351e43888f5fb0b 632 SMART SM00729 347 564 2.8E-15 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS21105 e98b1c9d864a78db702ae963c731e386 361 PANTHER PTHR14969 39 250 2.3E-22 T 23-04-2016 NIDE_RS21105 e98b1c9d864a78db702ae963c731e386 361 SUPERFAMILY SSF48317 26 211 7.46E-33 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS21105 e98b1c9d864a78db702ae963c731e386 361 SMART SM00014 100 210 3.2E-19 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS21105 e98b1c9d864a78db702ae963c731e386 361 Gene3D G3DSA:1.20.144.10 15 209 1.7E-33 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS21105 e98b1c9d864a78db702ae963c731e386 361 Pfam PF01569 PAP2 superfamily 104 207 3.9E-22 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 SUPERFAMILY SSF50494 131 315 4.5E-66 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 SUPERFAMILY SSF50494 63 95 4.5E-66 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 Pfam PF13180 PDZ domain 444 510 1.1E-9 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 Pfam PF13180 PDZ domain 306 397 3.5E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 PANTHER PTHR22939 72 402 5.7E-125 T 23-04-2016 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 Pfam PF13365 Trypsin-like peptidase domain 134 267 3.6E-33 T 23-04-2016 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 SMART SM00228 306 389 3.3E-14 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 SMART SM00228 437 505 2.8E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 PANTHER PTHR22939:SF93 72 402 5.7E-125 T 23-04-2016 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 Gene3D G3DSA:2.40.10.10 197 308 3.2E-45 T 23-04-2016 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 Gene3D G3DSA:2.40.10.10 73 194 1.3E-37 T 23-04-2016 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 Gene3D G3DSA:2.30.42.10 309 404 8.9E-29 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 Gene3D G3DSA:2.30.42.10 426 514 7.1E-18 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 SUPERFAMILY SSF50156 288 397 4.53E-23 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 73 511 1.1E-154 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 PRINTS PR00834 HtrA/DegQ protease family signature 260 277 4.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 PRINTS PR00834 HtrA/DegQ protease family signature 347 359 4.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 PRINTS PR00834 HtrA/DegQ protease family signature 143 155 4.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 PRINTS PR00834 HtrA/DegQ protease family signature 204 228 4.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 PRINTS PR00834 HtrA/DegQ protease family signature 164 184 4.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 PRINTS PR00834 HtrA/DegQ protease family signature 238 255 4.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS13630 73e82556ac20d5d4e4ae3b80477682c5 514 SUPERFAMILY SSF50156 428 514 5.39E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS14885 9779dbd5264e1a2e01de9dbc2565cf87 210 PANTHER PTHR30546 29 209 1.4E-29 T 23-04-2016 NIDE_RS14885 9779dbd5264e1a2e01de9dbc2565cf87 210 Pfam PF03358 NADPH-dependent FMN reductase 74 155 4.3E-11 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 NIDE_RS14885 9779dbd5264e1a2e01de9dbc2565cf87 210 Gene3D G3DSA:3.40.50.360 31 196 1.3E-41 T 23-04-2016 IPR029039 Flavoprotein-like domain NIDE_RS14885 9779dbd5264e1a2e01de9dbc2565cf87 210 PANTHER PTHR30546:SF0 29 209 1.4E-29 T 23-04-2016 NIDE_RS14885 9779dbd5264e1a2e01de9dbc2565cf87 210 SUPERFAMILY SSF52218 32 192 5.37E-36 T 23-04-2016 IPR029039 Flavoprotein-like domain NIDE_RS11300 6af3a0d2ca40729621a9fcba2f896a09 225 SMART SM00028 62 95 1.9 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11300 6af3a0d2ca40729621a9fcba2f896a09 225 SMART SM00028 28 61 350.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11300 6af3a0d2ca40729621a9fcba2f896a09 225 SMART SM00028 96 129 24.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11300 6af3a0d2ca40729621a9fcba2f896a09 225 Gene3D G3DSA:1.25.40.10 33 132 1.9E-16 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11300 6af3a0d2ca40729621a9fcba2f896a09 225 PANTHER PTHR23083 15 132 8.8E-12 T 23-04-2016 NIDE_RS11300 6af3a0d2ca40729621a9fcba2f896a09 225 SUPERFAMILY SSF48452 31 134 5.81E-16 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS11300 6af3a0d2ca40729621a9fcba2f896a09 225 Pfam PF14559 Tetratricopeptide repeat 42 105 3.0E-11 T 23-04-2016 NIDE_RS20090 a394efeacff9987bccf95baae09254d5 480 Pfam PF00589 Phage integrase family 274 450 1.7E-14 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS20090 a394efeacff9987bccf95baae09254d5 480 PANTHER PTHR30349:SF20 223 466 1.3E-22 T 23-04-2016 NIDE_RS20090 a394efeacff9987bccf95baae09254d5 480 PANTHER PTHR30349:SF20 149 193 1.3E-22 T 23-04-2016 NIDE_RS20090 a394efeacff9987bccf95baae09254d5 480 PANTHER PTHR30349 223 466 1.3E-22 T 23-04-2016 NIDE_RS20090 a394efeacff9987bccf95baae09254d5 480 PANTHER PTHR30349 149 193 1.3E-22 T 23-04-2016 NIDE_RS20090 a394efeacff9987bccf95baae09254d5 480 Gene3D G3DSA:1.10.150.130 140 256 9.0E-5 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal NIDE_RS20090 a394efeacff9987bccf95baae09254d5 480 SUPERFAMILY SSF56349 137 191 1.32E-39 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS20090 a394efeacff9987bccf95baae09254d5 480 SUPERFAMILY SSF56349 219 453 1.32E-39 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS20090 a394efeacff9987bccf95baae09254d5 480 Gene3D G3DSA:1.10.443.10 292 453 3.8E-22 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS12605 6e52108375d4208dbdb696fc6d20eb7f 250 Gene3D G3DSA:3.40.1010.10 18 126 5.5E-17 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 NIDE_RS12605 6e52108375d4208dbdb696fc6d20eb7f 250 PANTHER PTHR21091 18 213 3.0E-39 T 23-04-2016 NIDE_RS12605 6e52108375d4208dbdb696fc6d20eb7f 250 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 19 218 1.3E-26 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS12605 6e52108375d4208dbdb696fc6d20eb7f 250 SUPERFAMILY SSF53790 18 235 1.57E-50 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS12605 6e52108375d4208dbdb696fc6d20eb7f 250 Gene3D G3DSA:3.30.950.10 127 238 2.0E-18 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 NIDE_RS12605 6e52108375d4208dbdb696fc6d20eb7f 250 PANTHER PTHR21091:SF18 18 213 3.0E-39 T 23-04-2016 NIDE_RS12605 6e52108375d4208dbdb696fc6d20eb7f 250 PIRSF PIRSF005917 7 250 3.3E-53 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS05020 7038d3dfd8414136bae11aa7b6cccfc1 114 SMART SM00834 1 43 2.7E-12 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NIDE_RS05020 7038d3dfd8414136bae11aa7b6cccfc1 114 PANTHER PTHR34404:SF3 2 99 3.1E-13 T 23-04-2016 NIDE_RS05020 7038d3dfd8414136bae11aa7b6cccfc1 114 Pfam PF09723 Zinc ribbon domain 1 41 7.1E-13 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NIDE_RS05020 7038d3dfd8414136bae11aa7b6cccfc1 114 PANTHER PTHR34404 2 99 3.1E-13 T 23-04-2016 NIDE_RS05020 7038d3dfd8414136bae11aa7b6cccfc1 114 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 49 2.5E-14 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 PANTHER PTHR10799 584 607 4.1E-34 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 PANTHER PTHR10799 672 857 4.1E-34 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 PANTHER PTHR10799 248 323 4.1E-34 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 PANTHER PTHR10799 484 559 4.1E-34 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 PANTHER PTHR10799 342 459 4.1E-34 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 Gene3D G3DSA:3.30.870.10 104 182 4.1E-5 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 SUPERFAMILY SSF52540 190 433 1.95E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 SUPERFAMILY SSF52540 364 415 8.54E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 SUPERFAMILY SSF52540 672 857 8.54E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 SMART SM00490 711 804 5.2E-12 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 Pfam PF13091 PLD-like domain 18 176 1.6E-13 T 23-04-2016 IPR025202 Phospholipase D-like domain NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 Pfam PF00176 SNF2 family N-terminal domain 242 431 3.7E-15 T 23-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 PANTHER PTHR10799:SF576 584 607 4.1E-34 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 PANTHER PTHR10799:SF576 672 857 4.1E-34 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 PANTHER PTHR10799:SF576 248 323 4.1E-34 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 PANTHER PTHR10799:SF576 484 559 4.1E-34 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 PANTHER PTHR10799:SF576 342 459 4.1E-34 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 SUPERFAMILY SSF56024 97 182 1.92E-7 T 23-04-2016 NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 SMART SM00487 223 441 3.0E-13 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 Gene3D G3DSA:3.40.50.300 674 830 1.6E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 Gene3D G3DSA:3.40.50.300 225 425 2.3E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00610 491418e6af041cfa1df6773b34ad5344 912 Pfam PF00271 Helicase conserved C-terminal domain 682 804 4.0E-13 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 SUPERFAMILY SSF102114 176 407 3.53E-46 T 23-04-2016 NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 PANTHER PTHR11918:SF64 26 187 1.5E-84 T 23-04-2016 NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 PANTHER PTHR11918:SF64 205 538 1.5E-84 T 23-04-2016 NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 Pfam PF02310 B12 binding domain 32 143 9.1E-18 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 Gene3D G3DSA:3.40.50.280 35 131 9.2E-9 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 Pfam PF04055 Radical SAM superfamily 212 373 1.4E-19 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 PANTHER PTHR11918 26 187 1.5E-84 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 PANTHER PTHR11918 205 538 1.5E-84 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 Gene3D G3DSA:3.80.30.20 210 401 2.6E-46 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 SMART SM00729 207 418 1.5E-32 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS03875 ca4145fd76f811197e931f91dd616cff 544 SUPERFAMILY SSF52242 35 152 3.92E-10 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 Gene3D G3DSA:3.30.43.10 26 96 1.5E-20 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 SUPERFAMILY SSF56194 204 309 4.45E-36 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 PANTHER PTHR21071 11 309 5.2E-99 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 Gene3D G3DSA:3.90.78.10 236 309 2.1E-32 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 310 80.272 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 PANTHER PTHR21071:SF4 11 309 5.2E-99 T 23-04-2016 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 Gene3D G3DSA:3.30.465.10 104 235 2.5E-35 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 209 307 3.0E-30 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 Pfam PF01565 FAD binding domain 47 174 1.7E-22 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 SUPERFAMILY SSF56176 33 218 2.29E-36 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 NIDE_RS03500 0d52395af0963c94bd7bd5e19276eaf0 310 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 34 308 3.1E-62 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 PANTHER PTHR31964:SF45 4 144 1.5E-28 T 23-04-2016 NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 PRINTS PR01438 Universal stress protein signature 102 114 1.4E-17 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 PRINTS PR01438 Universal stress protein signature 4 22 1.4E-17 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 PRINTS PR01438 Universal stress protein signature 120 142 1.4E-17 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 Gene3D G3DSA:3.40.50.620 152 295 2.7E-38 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 Gene3D G3DSA:3.40.50.620 3 144 5.7E-38 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 PANTHER PTHR31964 4 144 1.5E-28 T 23-04-2016 NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 SUPERFAMILY SSF52402 5 144 4.69E-37 T 23-04-2016 NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 Pfam PF00582 Universal stress protein family 156 294 9.0E-30 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 Pfam PF00582 Universal stress protein family 5 142 2.3E-30 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS20500 8ae3b10428679b876b60b4a38e7bfa8e 311 SUPERFAMILY SSF52402 155 294 4.12E-37 T 23-04-2016 NIDE_RS18385 f064fb5bf2793fb50d4ae9a0663feadd 156 Pfam PF00578 AhpC/TSA family 10 133 8.0E-37 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS18385 f064fb5bf2793fb50d4ae9a0663feadd 156 PANTHER PTHR10681 1 152 7.2E-43 T 23-04-2016 NIDE_RS18385 f064fb5bf2793fb50d4ae9a0663feadd 156 PIRSF PIRSF000239 4 156 3.4E-30 T 23-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 NIDE_RS18385 f064fb5bf2793fb50d4ae9a0663feadd 156 SUPERFAMILY SSF52833 7 155 1.88E-46 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS18385 f064fb5bf2793fb50d4ae9a0663feadd 156 Gene3D G3DSA:3.40.30.10 6 155 1.3E-47 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS08175 c369ac23e8d72fe54c14a8a1ac69bb89 276 SUPERFAMILY SSF53098 110 269 4.05E-47 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS08175 c369ac23e8d72fe54c14a8a1ac69bb89 276 PANTHER PTHR32552 15 264 4.7E-31 T 23-04-2016 NIDE_RS08175 c369ac23e8d72fe54c14a8a1ac69bb89 276 Pfam PF13276 HTH-like domain 35 89 4.3E-10 T 23-04-2016 IPR025948 HTH-like domain NIDE_RS08175 c369ac23e8d72fe54c14a8a1ac69bb89 276 Gene3D G3DSA:3.30.420.10 106 261 8.4E-39 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS08175 c369ac23e8d72fe54c14a8a1ac69bb89 276 Pfam PF00665 Integrase core domain 111 222 7.6E-25 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS13820 e7ee9ec5adb588b0c1caeff0d7f923b7 400 Gene3D G3DSA:3.30.9.10 91 141 7.5E-7 T 23-04-2016 NIDE_RS13820 e7ee9ec5adb588b0c1caeff0d7f923b7 400 Gene3D G3DSA:3.30.9.10 218 267 7.5E-7 T 23-04-2016 NIDE_RS13820 e7ee9ec5adb588b0c1caeff0d7f923b7 400 PANTHER PTHR13847 3 398 2.8E-96 T 23-04-2016 NIDE_RS13820 e7ee9ec5adb588b0c1caeff0d7f923b7 400 SUPERFAMILY SSF51905 5 217 3.76E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS13820 e7ee9ec5adb588b0c1caeff0d7f923b7 400 SUPERFAMILY SSF51905 246 294 3.76E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS13820 e7ee9ec5adb588b0c1caeff0d7f923b7 400 Gene3D G3DSA:3.50.50.60 268 277 3.1E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS13820 e7ee9ec5adb588b0c1caeff0d7f923b7 400 Gene3D G3DSA:3.50.50.60 3 87 3.1E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS13820 e7ee9ec5adb588b0c1caeff0d7f923b7 400 Gene3D G3DSA:3.50.50.60 142 216 3.1E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS13820 e7ee9ec5adb588b0c1caeff0d7f923b7 400 PANTHER PTHR13847:SF191 3 398 2.8E-96 T 23-04-2016 NIDE_RS13820 e7ee9ec5adb588b0c1caeff0d7f923b7 400 Pfam PF01266 FAD dependent oxidoreductase 7 395 8.3E-62 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 NIDE_RS16445 529db337acf3fa6e446b9f5ac65dda50 441 PANTHER PTHR35093 1 372 1.3E-30 T 23-04-2016 NIDE_RS16445 529db337acf3fa6e446b9f5ac65dda50 441 SUPERFAMILY SSF56935 14 440 2.75E-36 T 23-04-2016 NIDE_RS16445 529db337acf3fa6e446b9f5ac65dda50 441 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 9 373 6.3E-37 T 23-04-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) NIDE_RS16445 529db337acf3fa6e446b9f5ac65dda50 441 Gene3D G3DSA:2.40.160.60 14 441 3.7E-88 T 23-04-2016 NIDE_RS15565 41e8ca91f7aa00531b3e944ea1a7bfd9 215 Pfam PF01914 MarC family integral membrane protein 8 203 1.5E-48 T 23-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 NIDE_RS15565 41e8ca91f7aa00531b3e944ea1a7bfd9 215 PANTHER PTHR33508:SF1 1 215 5.7E-61 T 23-04-2016 NIDE_RS15565 41e8ca91f7aa00531b3e944ea1a7bfd9 215 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 1 201 1.0E-46 T 23-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 NIDE_RS15565 41e8ca91f7aa00531b3e944ea1a7bfd9 215 PANTHER PTHR33508 1 215 5.7E-61 T 23-04-2016 NIDE_RS15835 789c86bf3e1d868ce3a77cb750ea5b4a 184 PRINTS PR01171 Bacterial lipocalin signature 170 180 3.1E-8 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 NIDE_RS15835 789c86bf3e1d868ce3a77cb750ea5b4a 184 PRINTS PR01171 Bacterial lipocalin signature 34 48 3.1E-8 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 NIDE_RS15835 789c86bf3e1d868ce3a77cb750ea5b4a 184 PRINTS PR01171 Bacterial lipocalin signature 143 154 3.1E-8 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 NIDE_RS15835 789c86bf3e1d868ce3a77cb750ea5b4a 184 PRINTS PR01171 Bacterial lipocalin signature 128 136 3.1E-8 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 NIDE_RS15835 789c86bf3e1d868ce3a77cb750ea5b4a 184 PIRSF PIRSF036893 2 184 3.0E-51 T 23-04-2016 IPR022271 Lipocalin, ApoD type NIDE_RS15835 789c86bf3e1d868ce3a77cb750ea5b4a 184 ProSitePatterns PS00213 Lipocalin signature. 35 46 - T 23-04-2016 IPR022272 Lipocalin family conserved site NIDE_RS15835 789c86bf3e1d868ce3a77cb750ea5b4a 184 Gene3D G3DSA:2.40.128.20 7 180 7.2E-49 T 23-04-2016 IPR012674 Calycin NIDE_RS15835 789c86bf3e1d868ce3a77cb750ea5b4a 184 SUPERFAMILY SSF50814 13 180 1.68E-38 T 23-04-2016 IPR011038 Calycin-like NIDE_RS15835 789c86bf3e1d868ce3a77cb750ea5b4a 184 Pfam PF08212 Lipocalin-like domain 34 180 3.3E-49 T 23-04-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain NIDE_RS15835 789c86bf3e1d868ce3a77cb750ea5b4a 184 PANTHER PTHR10612 8 179 6.1E-41 T 23-04-2016 NIDE_RS19180 9946e9ef9c3e0ba791aab2aa480479f9 278 Gene3D G3DSA:3.40.50.1000 9 88 2.0E-31 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19180 9946e9ef9c3e0ba791aab2aa480479f9 278 Gene3D G3DSA:3.40.50.1000 187 252 2.0E-31 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19180 9946e9ef9c3e0ba791aab2aa480479f9 278 SUPERFAMILY SSF56784 9 242 1.06E-31 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19180 9946e9ef9c3e0ba791aab2aa480479f9 278 Gene3D G3DSA:3.30.980.20 101 186 9.6E-25 T 23-04-2016 NIDE_RS19180 9946e9ef9c3e0ba791aab2aa480479f9 278 TIGRFAM TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family 9 273 1.2E-65 T 23-04-2016 IPR006381 HAD-superfamily hydrolase, superfamily IIB, MPGP GO:0005737|GO:0050531|GO:0051479 KEGG: 00051+3.1.3.70|MetaCyc: PWY-5656 NIDE_RS19180 9946e9ef9c3e0ba791aab2aa480479f9 278 Pfam PF08282 haloacid dehalogenase-like hydrolase 10 74 2.0E-5 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19180 9946e9ef9c3e0ba791aab2aa480479f9 278 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 9 240 5.7E-12 T 23-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 NIDE_RS14150 2899afc9ef158d9ddeb11ca733f9cf16 188 SUPERFAMILY SSF55166 72 188 2.62E-29 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain NIDE_RS14150 2899afc9ef158d9ddeb11ca733f9cf16 188 Pfam PF05951 Bacterial protein of unknown function (DUF882) 45 188 3.0E-46 T 23-04-2016 IPR010275 Protein of unknown function DUF882 NIDE_RS14150 2899afc9ef158d9ddeb11ca733f9cf16 188 PANTHER PTHR37425 10 188 2.6E-42 T 23-04-2016 NIDE_RS14150 2899afc9ef158d9ddeb11ca733f9cf16 188 Gene3D G3DSA:3.30.1380.10 74 188 2.7E-25 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain NIDE_RS12480 0f28e46338e4cf842cecb5d550c9e2e3 446 SUPERFAMILY SSF111369 222 356 2.75E-9 T 23-04-2016 NIDE_RS12480 0f28e46338e4cf842cecb5d550c9e2e3 446 SMART SM00065 10 158 0.0018 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS12480 0f28e46338e4cf842cecb5d550c9e2e3 446 Pfam PF01590 GAF domain 17 147 2.5E-10 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS12480 0f28e46338e4cf842cecb5d550c9e2e3 446 PANTHER PTHR32347 244 446 1.5E-19 T 23-04-2016 NIDE_RS12480 0f28e46338e4cf842cecb5d550c9e2e3 446 Gene3D G3DSA:3.30.450.40 16 155 2.9E-12 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS12480 0f28e46338e4cf842cecb5d550c9e2e3 446 PANTHER PTHR32347:SF12 244 446 1.5E-19 T 23-04-2016 NIDE_RS12480 0f28e46338e4cf842cecb5d550c9e2e3 446 Gene3D G3DSA:2.40.50.100 219 246 3.3E-8 T 23-04-2016 NIDE_RS12480 0f28e46338e4cf842cecb5d550c9e2e3 446 Gene3D G3DSA:2.40.50.100 298 337 3.3E-8 T 23-04-2016 NIDE_RS12480 0f28e46338e4cf842cecb5d550c9e2e3 446 SUPERFAMILY SSF55781 17 156 1.22E-12 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS12480 0f28e46338e4cf842cecb5d550c9e2e3 446 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 211 389 3.1E-16 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS03515 058587a584f70e681b30a3863508514b 411 Pfam PF02491 SHS2 domain inserted in FTSA 83 161 8.4E-30 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 PANTHER PTHR32432:SF4 2 380 1.0E-144 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 SUPERFAMILY SSF53067 199 376 6.34E-44 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 Gene3D G3DSA:3.90.640.10 234 296 5.2E-19 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 SUPERFAMILY SSF53067 7 220 9.44E-59 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 PIRSF PIRSF003101 1 411 5.9E-143 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 376 2.6E-141 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 Gene3D G3DSA:3.30.420.40 157 208 3.4E-27 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 Gene3D G3DSA:3.30.420.40 3 81 3.4E-27 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 Gene3D G3DSA:3.30.1490.110 95 156 1.3E-17 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 Gene3D G3DSA:3.30.420.40 297 349 2.5E-27 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 Gene3D G3DSA:3.30.420.40 209 233 2.5E-27 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 SMART SM00842 8 195 4.6E-99 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 PANTHER PTHR32432 2 380 1.0E-144 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 Pfam PF14450 Cell division protein FtsA 206 373 9.0E-22 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 Pfam PF14450 Cell division protein FtsA 9 191 1.5E-11 T 23-04-2016 NIDE_RS03515 058587a584f70e681b30a3863508514b 411 Hamap MF_02033 Cell division protein FtsA [ftsA]. 4 411 30.848 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 PANTHER PTHR12697 40 329 1.2E-19 T 23-04-2016 NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 PANTHER PTHR12697:SF18 40 329 1.2E-19 T 23-04-2016 NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 Gene3D G3DSA:1.25.10.10 40 241 4.6E-30 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 Pfam PF13646 HEAT repeats 114 197 2.0E-11 T 23-04-2016 NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 Pfam PF13646 HEAT repeats 41 100 2.1E-7 T 23-04-2016 NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 Pfam PF13646 HEAT repeats 255 330 1.5E-9 T 23-04-2016 NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 SMART SM00567 E-Z type HEAT repeats 286 317 5.8 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 SMART SM00567 E-Z type HEAT repeats 156 187 1.6 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 SMART SM00567 E-Z type HEAT repeats 248 284 470.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 SMART SM00567 E-Z type HEAT repeats 55 86 79.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 SMART SM00567 E-Z type HEAT repeats 123 154 52.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 SUPERFAMILY SSF48371 41 333 7.12E-30 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS05535 868321aec51b1b9b3b0a73c069971d65 348 Gene3D G3DSA:1.25.10.10 256 335 5.6E-4 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS05710 3b84a077edda08dfa46a625f324de811 207 Gene3D G3DSA:3.40.30.10 49 204 3.6E-64 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS05710 3b84a077edda08dfa46a625f324de811 207 PRINTS PR01011 Glutathione peroxidase family signature 68 85 5.9E-17 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 NIDE_RS05710 3b84a077edda08dfa46a625f324de811 207 PRINTS PR01011 Glutathione peroxidase family signature 103 119 5.9E-17 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 NIDE_RS05710 3b84a077edda08dfa46a625f324de811 207 PRINTS PR01011 Glutathione peroxidase family signature 166 175 5.9E-17 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 NIDE_RS05710 3b84a077edda08dfa46a625f324de811 207 ProSitePatterns PS00460 Glutathione peroxidases active site. 70 85 - T 23-04-2016 IPR029759 Glutathione peroxidase active site NIDE_RS05710 3b84a077edda08dfa46a625f324de811 207 Pfam PF00255 Glutathione peroxidase 50 156 4.0E-40 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 NIDE_RS05710 3b84a077edda08dfa46a625f324de811 207 PANTHER PTHR11592 43 204 3.7E-77 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 NIDE_RS05710 3b84a077edda08dfa46a625f324de811 207 SUPERFAMILY SSF52833 49 204 6.67E-57 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS14850 43b948bdfdf7eea970d82fb40a843962 410 PANTHER PTHR30097:SF4 53 410 3.8E-84 T 23-04-2016 NIDE_RS14850 43b948bdfdf7eea970d82fb40a843962 410 Gene3D G3DSA:2.40.50.100 217 249 2.8E-9 T 23-04-2016 NIDE_RS14850 43b948bdfdf7eea970d82fb40a843962 410 Gene3D G3DSA:2.40.50.100 101 133 2.8E-9 T 23-04-2016 NIDE_RS14850 43b948bdfdf7eea970d82fb40a843962 410 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 89 328 1.3E-58 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS14850 43b948bdfdf7eea970d82fb40a843962 410 SUPERFAMILY SSF111369 87 332 8.63E-24 T 23-04-2016 NIDE_RS14850 43b948bdfdf7eea970d82fb40a843962 410 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 80 401 8.8E-51 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS14850 43b948bdfdf7eea970d82fb40a843962 410 PANTHER PTHR30097 53 410 3.8E-84 T 23-04-2016 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 294 4.3E-104 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 Gene3D G3DSA:1.10.287.80 244 289 4.1E-26 T 23-04-2016 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 SUPERFAMILY SSF52943 3 294 2.62E-88 T 23-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 PANTHER PTHR11693 1 295 2.1E-116 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 PRINTS PR00126 ATP synthase gamma subunit signature 241 260 5.4E-36 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 5.4E-36 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 5.4E-36 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 PRINTS PR00126 ATP synthase gamma subunit signature 272 293 5.4E-36 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 Gene3D G3DSA:3.40.1380.10 64 192 1.1E-44 T 23-04-2016 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 Gene3D G3DSA:1.10.287.80 19 60 2.7E-29 T 23-04-2016 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 Gene3D G3DSA:1.10.287.80 209 243 2.7E-29 T 23-04-2016 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 Pfam PF00231 ATP synthase 3 294 2.6E-92 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 280 293 - T 23-04-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site NIDE_RS01705 df30d09d62a43ae1af8289a0172cd3b4 295 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 294 34.624 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS21195 153be8049f306a4921e4b28e750f1f24 157 SUPERFAMILY SSF117070 10 143 1.44E-22 T 23-04-2016 NIDE_RS21195 153be8049f306a4921e4b28e750f1f24 157 SMART SM00769 31 148 2.6E-7 T 23-04-2016 IPR013990 Water stress and hypersensitive response domain GO:0009269 NIDE_RS21195 153be8049f306a4921e4b28e750f1f24 157 Gene3D G3DSA:2.60.40.10 40 104 2.6E-7 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS21195 153be8049f306a4921e4b28e750f1f24 157 Pfam PF03168 Late embryogenesis abundant protein 51 131 1.5E-10 T 23-04-2016 IPR004864 Late embryogenesis abundant protein, LEA-14 NIDE_RS05195 6e8fa45aa345339a83b0fffa556b5ab3 200 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 65 182 4.9E-6 T 23-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain NIDE_RS05195 6e8fa45aa345339a83b0fffa556b5ab3 200 Gene3D G3DSA:3.30.530.20 56 194 6.0E-7 T 23-04-2016 IPR023393 START-like domain NIDE_RS05195 6e8fa45aa345339a83b0fffa556b5ab3 200 SUPERFAMILY SSF55961 56 194 7.03E-13 T 23-04-2016 NIDE_RS06680 f3f3e2d204fb9015ac306d649d45fe99 364 SMART SM00922 143 239 3.1E-15 T 23-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal NIDE_RS06680 f3f3e2d204fb9015ac306d649d45fe99 364 Gene3D G3DSA:3.30.390.10 1 125 7.3E-24 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NIDE_RS06680 f3f3e2d204fb9015ac306d649d45fe99 364 Pfam PF13378 Enolase C-terminal domain-like 148 360 4.9E-24 T 23-04-2016 IPR029065 Enolase C-terminal domain-like NIDE_RS06680 f3f3e2d204fb9015ac306d649d45fe99 364 Gene3D G3DSA:3.20.20.120 133 361 2.8E-38 T 23-04-2016 IPR029065 Enolase C-terminal domain-like NIDE_RS06680 f3f3e2d204fb9015ac306d649d45fe99 364 PANTHER PTHR13794:SF55 1 330 2.4E-48 T 23-04-2016 NIDE_RS06680 f3f3e2d204fb9015ac306d649d45fe99 364 SUPERFAMILY SSF54826 1 125 4.07E-20 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 NIDE_RS06680 f3f3e2d204fb9015ac306d649d45fe99 364 PANTHER PTHR13794 1 330 2.4E-48 T 23-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 NIDE_RS06680 f3f3e2d204fb9015ac306d649d45fe99 364 SUPERFAMILY SSF51604 112 360 1.44E-34 T 23-04-2016 IPR029065 Enolase C-terminal domain-like NIDE_RS06680 f3f3e2d204fb9015ac306d649d45fe99 364 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 19 122 1.7E-5 T 23-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain NIDE_RS17755 80f7382e8d05bd5e19d74623974ec761 144 SUPERFAMILY SSF82784 9 141 5.23E-33 T 23-04-2016 IPR003718 OsmC/Ohr family NIDE_RS17755 80f7382e8d05bd5e19d74623974ec761 144 Pfam PF02566 OsmC-like protein 43 140 1.3E-18 T 23-04-2016 IPR003718 OsmC/Ohr family NIDE_RS17755 80f7382e8d05bd5e19d74623974ec761 144 Gene3D G3DSA:3.30.300.20 8 143 1.3E-40 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta NIDE_RS17755 80f7382e8d05bd5e19d74623974ec761 144 PANTHER PTHR33797:SF1 3 143 3.0E-17 T 23-04-2016 NIDE_RS17755 80f7382e8d05bd5e19d74623974ec761 144 PANTHER PTHR33797 3 143 3.0E-17 T 23-04-2016 NIDE_RS18515 ed888f5debe6ac728c04aa7009ff368a 253 PANTHER PTHR21600 85 230 1.9E-18 T 23-04-2016 NIDE_RS18515 ed888f5debe6ac728c04aa7009ff368a 253 Pfam PF04468 PSP1 C-terminal conserved region 84 168 6.2E-22 T 23-04-2016 IPR007557 PSP1, C-terminal NIDE_RS18515 ed888f5debe6ac728c04aa7009ff368a 253 PANTHER PTHR21600:SF3 85 230 1.9E-18 T 23-04-2016 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 SMART SM00028 90 123 3.2 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 SMART SM00028 158 191 1.7E-6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 SMART SM00028 294 327 0.0015 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 SMART SM00028 260 293 0.093 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 SMART SM00028 192 225 2.2E-7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 SMART SM00028 226 259 0.067 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 SMART SM00028 124 157 0.14 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 Pfam PF13432 Tetratricopeptide repeat 265 321 3.0E-8 T 23-04-2016 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 Pfam PF13432 Tetratricopeptide repeat 100 155 2.7E-4 T 23-04-2016 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 Gene3D G3DSA:1.25.40.10 241 333 5.6E-23 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 Pfam PF00515 Tetratricopeptide repeat 158 191 9.3E-9 T 23-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 Pfam PF13414 TPR repeat 201 240 6.5E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 PANTHER PTHR23083 51 322 5.3E-60 T 23-04-2016 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 Gene3D G3DSA:1.25.40.10 154 240 1.5E-29 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 Gene3D G3DSA:1.25.40.10 55 153 1.7E-16 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20040 7c2b8bff412fd32e809270301247ddba 345 SUPERFAMILY SSF48452 58 324 1.9E-49 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 PANTHER PTHR11741 6 196 4.0E-86 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 Pfam PF00889 Elongation factor TS 92 197 9.1E-29 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 Pfam PF00889 Elongation factor TS 72 97 8.3E-9 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 ProSitePatterns PS01127 Elongation factor Ts signature 2. 76 86 - T 23-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 5 97 1.0E-32 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 SUPERFAMILY SSF54713 56 196 2.22E-49 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 Gene3D G3DSA:1.10.8.10 6 54 1.7E-22 T 23-04-2016 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 Hamap MF_00050 Elongation factor Ts [tsf]. 1 198 42.195 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 SUPERFAMILY SSF46934 6 54 3.39E-16 T 23-04-2016 IPR009060 UBA-like GO:0005515 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 Gene3D G3DSA:1.10.286.20 111 155 4.1E-16 T 23-04-2016 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 Gene3D G3DSA:3.30.479.20 156 197 9.9E-35 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 NIDE_RS12665 139b5712697e46ca870e1276a731ca6a 198 Gene3D G3DSA:3.30.479.20 56 110 9.9E-35 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 NIDE_RS06875 851d956a053ecafcb1801d2e6a74877b 143 Gene3D G3DSA:3.40.50.2300 14 94 1.4E-5 T 23-04-2016 NIDE_RS06875 851d956a053ecafcb1801d2e6a74877b 143 SUPERFAMILY SSF52172 10 93 2.13E-5 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS01025 e04d9a49678c536a327e8229abe61b91 498 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 10 469 18.22 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 NIDE_RS01025 e04d9a49678c536a327e8229abe61b91 498 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 13 468 3.6E-127 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 NIDE_RS01025 e04d9a49678c536a327e8229abe61b91 498 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 78 103 3.5E-5 T 23-04-2016 NIDE_RS01025 e04d9a49678c536a327e8229abe61b91 498 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 3.5E-5 T 23-04-2016 NIDE_RS01025 e04d9a49678c536a327e8229abe61b91 498 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 308 320 3.5E-5 T 23-04-2016 NIDE_RS01025 e04d9a49678c536a327e8229abe61b91 498 PANTHER PTHR22773 4 472 3.1E-161 T 23-04-2016 NIDE_RS01025 e04d9a49678c536a327e8229abe61b91 498 PANTHER PTHR22773:SF41 4 472 3.1E-161 T 23-04-2016 NIDE_RS01025 e04d9a49678c536a327e8229abe61b91 498 Pfam PF00361 Proton-conducting membrane transporter 130 417 3.1E-73 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS01115 708ae8ee158473aab5b0255dba54e486 231 SUPERFAMILY SSF56784 18 212 6.27E-21 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS01115 708ae8ee158473aab5b0255dba54e486 231 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 19 204 1.1E-18 T 23-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 NIDE_RS01115 708ae8ee158473aab5b0255dba54e486 231 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 19 215 1.1E-37 T 23-04-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial NIDE_RS01115 708ae8ee158473aab5b0255dba54e486 231 Pfam PF12710 haloacid dehalogenase-like hydrolase 20 202 2.3E-28 T 23-04-2016 NIDE_RS01115 708ae8ee158473aab5b0255dba54e486 231 PANTHER PTHR10000 18 225 5.7E-29 T 23-04-2016 NIDE_RS01115 708ae8ee158473aab5b0255dba54e486 231 Gene3D G3DSA:3.40.50.1000 88 231 3.9E-37 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS01115 708ae8ee158473aab5b0255dba54e486 231 PANTHER PTHR10000:SF28 18 225 5.7E-29 T 23-04-2016 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 3.9E-30 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 298 316 3.9E-30 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 3.9E-30 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 381 403 3.9E-30 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 23-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 44 280 3.8E-62 T 23-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 SUPERFAMILY SSF51419 26 282 4.07E-80 T 23-04-2016 IPR029066 PLP-binding barrel NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 225 241 - T 23-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 SUPERFAMILY SSF50621 255 416 1.3E-57 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 Gene3D G3DSA:2.40.37.10 269 417 1.7E-54 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 413 5.0E-163 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PANTHER PTHR11482 1 420 2.8E-179 T 23-04-2016 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 Gene3D G3DSA:3.20.20.10 36 268 1.9E-79 T 23-04-2016 IPR029066 PLP-binding barrel NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 371 384 1.8E-24 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 1.8E-24 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 1.8E-24 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 1.8E-24 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 1.8E-24 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 285 391 5.3E-20 T 23-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 PANTHER PTHR11482:SF5 1 420 2.8E-179 T 23-04-2016 NIDE_RS02235 b2c27253535b95d438d0ff8c71faee5f 420 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 414 42.873 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 Pfam PF13167 GTP-binding GTPase N-terminal 186 274 1.9E-27 T 23-04-2016 IPR025121 GTPase HflX, N-terminal NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 Pfam PF16360 GTP-binding GTPase Middle Region 276 354 2.1E-31 T 23-04-2016 IPR032305 GTP-binding protein, middle domain NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 429 447 3.4E-8 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 362 382 3.4E-8 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 SUPERFAMILY SSF52540 360 526 1.57E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 Gene3D G3DSA:3.40.50.300 361 521 1.1E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 PANTHER PTHR10229:SF0 10 521 1.5E-177 T 23-04-2016 NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 172 518 2.1E-135 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 Pfam PF01926 50S ribosome-binding GTPase 363 480 2.4E-19 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 PANTHER PTHR10229 10 521 1.5E-177 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 NIDE_RS11270 407bb8a2282ef4feef95c351b2784d0f 546 Hamap MF_00900 GTPase HflX [hflX]. 189 544 42.274 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 NIDE_RS14555 408ade2fa1429d61dccb0a8c70fa6983 506 PANTHER PTHR23077 132 505 1.3E-123 T 23-04-2016 NIDE_RS14555 408ade2fa1429d61dccb0a8c70fa6983 506 SUPERFAMILY SSF52540 268 471 2.5E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14555 408ade2fa1429d61dccb0a8c70fa6983 506 Gene3D G3DSA:3.40.50.300 268 416 6.3E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14555 408ade2fa1429d61dccb0a8c70fa6983 506 PANTHER PTHR23077:SF75 132 505 1.3E-123 T 23-04-2016 NIDE_RS14555 408ade2fa1429d61dccb0a8c70fa6983 506 SMART SM00382 274 411 2.8E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS14555 408ade2fa1429d61dccb0a8c70fa6983 506 Gene3D G3DSA:1.10.8.60 417 466 2.2E-6 T 23-04-2016 NIDE_RS14555 408ade2fa1429d61dccb0a8c70fa6983 506 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 278 408 1.0E-29 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS19445 b0b79fbe07291a63974863281f4a92ea 318 PANTHER PTHR11432 6 315 4.1E-110 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 NIDE_RS19445 b0b79fbe07291a63974863281f4a92ea 318 PANTHER PTHR11432:SF1 6 315 4.1E-110 T 23-04-2016 NIDE_RS19445 b0b79fbe07291a63974863281f4a92ea 318 Pfam PF00146 NADH dehydrogenase 10 312 3.7E-47 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 PANTHER PTHR10520 1 425 3.3E-240 T 23-04-2016 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 Gene3D G3DSA:3.40.50.20 2 93 5.7E-36 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 SMART SM01209 101 293 8.9E-127 T 23-04-2016 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 SUPERFAMILY SSF56059 102 323 2.65E-61 T 23-04-2016 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 Gene3D G3DSA:3.30.1490.20 121 188 2.3E-28 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 2 100 1.7E-33 T 23-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 293 1.8E-78 T 23-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 Gene3D G3DSA:3.90.600.10 328 420 2.5E-33 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 2 421 1.5E-163 T 23-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 SMART SM01210 327 421 3.7E-46 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 328 419 1.5E-28 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 SUPERFAMILY SSF52440 2 101 3.45E-34 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 421 41.487 T 23-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 Gene3D G3DSA:3.30.470.20 189 325 3.3E-60 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS11805 0386879c21a281dc0dbc211b6e51da5f 425 SUPERFAMILY SSF51246 326 421 3.61E-27 T 23-04-2016 IPR011054 Rudiment single hybrid motif NIDE_RS19850 2e8a3cbaf20f7866393e3036f8503644 289 Gene3D G3DSA:3.40.50.720 1 160 2.1E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19850 2e8a3cbaf20f7866393e3036f8503644 289 PIRSF PIRSF000103 1 289 1.4E-66 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 NIDE_RS19850 2e8a3cbaf20f7866393e3036f8503644 289 SUPERFAMILY SSF48179 160 284 8.05E-23 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 NIDE_RS19850 2e8a3cbaf20f7866393e3036f8503644 289 SUPERFAMILY SSF51735 1 161 5.26E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19850 2e8a3cbaf20f7866393e3036f8503644 289 Gene3D G3DSA:1.10.1040.10 162 285 7.0E-21 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 NIDE_RS19850 2e8a3cbaf20f7866393e3036f8503644 289 PANTHER PTHR22981 1 281 8.4E-64 T 23-04-2016 NIDE_RS19850 2e8a3cbaf20f7866393e3036f8503644 289 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 162 281 3.1E-14 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 NIDE_RS19850 2e8a3cbaf20f7866393e3036f8503644 289 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 156 3.0E-31 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 650 755 2.3E-10 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 SUPERFAMILY SSF52540 31 105 5.03E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 SUPERFAMILY SSF52540 308 539 5.03E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 Gene3D G3DSA:3.40.50.300 30 93 3.6E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 Gene3D G3DSA:3.40.50.300 299 395 3.6E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 PANTHER PTHR10046 189 761 4.6E-112 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 SUPERFAMILY SSF54211 565 758 1.29E-35 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 Pfam PF13654 AAA domain 26 540 5.0E-186 T 23-04-2016 NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 Gene3D G3DSA:3.40.50.300 165 275 3.7E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 677 696 1.9E-16 T 23-04-2016 NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 566 582 1.9E-16 T 23-04-2016 NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 707 725 1.9E-16 T 23-04-2016 NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 647 666 1.9E-16 T 23-04-2016 NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 62 81 1.9E-16 T 23-04-2016 NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 Gene3D G3DSA:3.30.230.10 561 756 1.9E-30 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS17230 c47ce1190b4f689b333e34222a213395 804 PANTHER PTHR10046:SF46 189 761 4.6E-112 T 23-04-2016 NIDE_RS18615 404bf7c90cb5bb3a4ca8dc3baeb22046 367 PANTHER PTHR32161:SF8 86 366 2.3E-39 T 23-04-2016 NIDE_RS18615 404bf7c90cb5bb3a4ca8dc3baeb22046 367 PANTHER PTHR32161:SF8 35 70 2.3E-39 T 23-04-2016 NIDE_RS18615 404bf7c90cb5bb3a4ca8dc3baeb22046 367 PANTHER PTHR32161 86 366 2.3E-39 T 23-04-2016 NIDE_RS18615 404bf7c90cb5bb3a4ca8dc3baeb22046 367 PANTHER PTHR32161 35 70 2.3E-39 T 23-04-2016 NIDE_RS18615 404bf7c90cb5bb3a4ca8dc3baeb22046 367 Gene3D G3DSA:2.130.10.10 37 365 7.5E-63 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS18615 404bf7c90cb5bb3a4ca8dc3baeb22046 367 Pfam PF07676 WD40-like Beta Propeller Repeat 272 309 1.5E-5 T 23-04-2016 IPR011659 WD40-like Beta Propeller NIDE_RS18615 404bf7c90cb5bb3a4ca8dc3baeb22046 367 Pfam PF07676 WD40-like Beta Propeller Repeat 208 233 0.0073 T 23-04-2016 IPR011659 WD40-like Beta Propeller NIDE_RS18615 404bf7c90cb5bb3a4ca8dc3baeb22046 367 Pfam PF07676 WD40-like Beta Propeller Repeat 164 198 1.8E-11 T 23-04-2016 IPR011659 WD40-like Beta Propeller NIDE_RS18615 404bf7c90cb5bb3a4ca8dc3baeb22046 367 Pfam PF07676 WD40-like Beta Propeller Repeat 324 361 7.3E-8 T 23-04-2016 IPR011659 WD40-like Beta Propeller NIDE_RS18615 404bf7c90cb5bb3a4ca8dc3baeb22046 367 SUPERFAMILY SSF82171 49 350 8.63E-37 T 23-04-2016 NIDE_RS15340 98f5edba22a78862fd856ad539df338e 296 SUPERFAMILY SSF52540 139 232 6.69E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15340 98f5edba22a78862fd856ad539df338e 296 SUPERFAMILY SSF52540 13 46 6.69E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15340 98f5edba22a78862fd856ad539df338e 296 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 15 295 2.3E-86 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 NIDE_RS15340 98f5edba22a78862fd856ad539df338e 296 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 14 294 28.98 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 NIDE_RS15340 98f5edba22a78862fd856ad539df338e 296 SUPERFAMILY SSF52540 14 158 5.68E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15340 98f5edba22a78862fd856ad539df338e 296 PANTHER PTHR11088 1 296 2.0E-96 T 23-04-2016 NIDE_RS15340 98f5edba22a78862fd856ad539df338e 296 Gene3D G3DSA:1.10.287.890 209 290 2.0E-27 T 23-04-2016 NIDE_RS15340 98f5edba22a78862fd856ad539df338e 296 Pfam PF01715 IPP transferase 47 291 2.4E-79 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 NIDE_RS15340 98f5edba22a78862fd856ad539df338e 296 Gene3D G3DSA:3.40.50.300 12 180 3.8E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 Gene3D G3DSA:2.40.33.10 73 178 2.3E-23 T 23-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 ProSitePatterns PS00110 Pyruvate kinase active site signature. 224 236 - T 23-04-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 SUPERFAMILY SSF52935 332 482 1.31E-39 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 Pfam PF00224 Pyruvate kinase, barrel domain 1 346 1.7E-116 T 23-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 482 9.2E-160 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 Gene3D G3DSA:3.40.1380.20 336 482 2.9E-44 T 23-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 SUPERFAMILY SSF50800 70 176 3.31E-17 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 Gene3D G3DSA:3.20.20.60 179 335 1.1E-96 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 Gene3D G3DSA:3.20.20.60 2 72 1.1E-96 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 SUPERFAMILY SSF51621 177 345 8.03E-93 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 SUPERFAMILY SSF51621 1 75 8.03E-93 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 PRINTS PR01050 Pyruvate kinase family signature 196 210 3.1E-60 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 PRINTS PR01050 Pyruvate kinase family signature 226 252 3.1E-60 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 PRINTS PR01050 Pyruvate kinase family signature 322 338 3.1E-60 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 PRINTS PR01050 Pyruvate kinase family signature 253 277 3.1E-60 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 PRINTS PR01050 Pyruvate kinase family signature 303 321 3.1E-60 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 PRINTS PR01050 Pyruvate kinase family signature 59 75 3.1E-60 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 PRINTS PR01050 Pyruvate kinase family signature 278 302 3.1E-60 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 PANTHER PTHR11817 1 482 1.4E-203 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS19535 3d450caefa97922cd21c5a57b2fcc17c 483 Pfam PF02887 Pyruvate kinase, alpha/beta domain 367 480 4.0E-33 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS06655 3610cd9c4d8909985219415ac6d6d351 153 Pfam PF03625 Domain of unknown function DUF302 62 124 4.5E-17 T 23-04-2016 IPR005180 Domain of unknown function DUF302 NIDE_RS06655 3610cd9c4d8909985219415ac6d6d351 153 Gene3D G3DSA:3.30.310.70 29 152 4.8E-28 T 23-04-2016 IPR005180 Domain of unknown function DUF302 NIDE_RS06655 3610cd9c4d8909985219415ac6d6d351 153 SUPERFAMILY SSF103247 32 152 1.2E-30 T 23-04-2016 IPR005180 Domain of unknown function DUF302 NIDE_RS08515 bd3af758a0f218690357c99972c4209e 381 Gene3D G3DSA:1.20.120.160 257 375 2.6E-13 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS08515 bd3af758a0f218690357c99972c4209e 381 Gene3D G3DSA:3.40.50.2300 140 256 1.1E-31 T 23-04-2016 NIDE_RS08515 bd3af758a0f218690357c99972c4209e 381 Pfam PF01627 Hpt domain 301 375 1.4E-11 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS08515 bd3af758a0f218690357c99972c4209e 381 Pfam PF00072 Response regulator receiver domain 150 264 5.4E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08515 bd3af758a0f218690357c99972c4209e 381 SMART SM00448 148 264 2.3E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08515 bd3af758a0f218690357c99972c4209e 381 SMART SM00073 288 377 0.006 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS08515 bd3af758a0f218690357c99972c4209e 381 PANTHER PTHR24423:SF477 108 303 1.4E-33 T 23-04-2016 NIDE_RS08515 bd3af758a0f218690357c99972c4209e 381 PANTHER PTHR24423 108 303 1.4E-33 T 23-04-2016 NIDE_RS08515 bd3af758a0f218690357c99972c4209e 381 SUPERFAMILY SSF47226 249 374 4.84E-15 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS08515 bd3af758a0f218690357c99972c4209e 381 SUPERFAMILY SSF52172 147 271 2.7E-30 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS03170 eb2c92aa9e0c70a3aa0e846ba12f5fc9 139 SUPERFAMILY SSF47598 4 50 1.11E-11 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 NIDE_RS03170 eb2c92aa9e0c70a3aa0e846ba12f5fc9 139 PANTHER PTHR34719 1 137 1.1E-52 T 23-04-2016 NIDE_RS03170 eb2c92aa9e0c70a3aa0e846ba12f5fc9 139 Pfam PF08753 NikR C terminal nickel binding domain 55 131 3.2E-31 T 23-04-2016 IPR014864 Transcription factor, NikR, nickel binding C-terminal NIDE_RS03170 eb2c92aa9e0c70a3aa0e846ba12f5fc9 139 Pfam PF01402 Ribbon-helix-helix protein, copG family 6 41 5.9E-9 T 23-04-2016 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 NIDE_RS03170 eb2c92aa9e0c70a3aa0e846ba12f5fc9 139 PANTHER PTHR34719:SF2 1 137 1.1E-52 T 23-04-2016 NIDE_RS03170 eb2c92aa9e0c70a3aa0e846ba12f5fc9 139 Hamap MF_00476 Putative nickel-responsive regulator [nikR]. 4 133 28.132 T 23-04-2016 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 NIDE_RS03170 eb2c92aa9e0c70a3aa0e846ba12f5fc9 139 SUPERFAMILY SSF55021 53 133 2.01E-27 T 23-04-2016 NIDE_RS03170 eb2c92aa9e0c70a3aa0e846ba12f5fc9 139 Gene3D G3DSA:3.30.70.1150 52 134 1.1E-32 T 23-04-2016 NIDE_RS03170 eb2c92aa9e0c70a3aa0e846ba12f5fc9 139 Gene3D G3DSA:1.10.1220.10 5 50 2.5E-23 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 NIDE_RS16705 3563868d7728ddb573e9019d35e3b785 82 Pfam PF01541 GIY-YIG catalytic domain 3 72 1.4E-17 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily NIDE_RS16705 3563868d7728ddb573e9019d35e3b785 82 SMART SM00465 1 79 0.0056 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily NIDE_RS16705 3563868d7728ddb573e9019d35e3b785 82 PANTHER PTHR34477 1 82 1.3E-31 T 23-04-2016 NIDE_RS16705 3563868d7728ddb573e9019d35e3b785 82 SUPERFAMILY SSF82771 1 69 3.53E-14 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily NIDE_RS06625 98470a1de32d4c6616f1cca9e7dcfb00 265 PANTHER PTHR24220:SF557 9 251 1.5E-59 T 23-04-2016 NIDE_RS06625 98470a1de32d4c6616f1cca9e7dcfb00 265 PANTHER PTHR24220 9 251 1.5E-59 T 23-04-2016 NIDE_RS06625 98470a1de32d4c6616f1cca9e7dcfb00 265 Pfam PF00005 ABC transporter 24 177 2.3E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS06625 98470a1de32d4c6616f1cca9e7dcfb00 265 SMART SM00382 32 225 8.8E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS06625 98470a1de32d4c6616f1cca9e7dcfb00 265 Gene3D G3DSA:3.40.50.300 6 240 7.4E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06625 98470a1de32d4c6616f1cca9e7dcfb00 265 SUPERFAMILY SSF52540 6 240 4.93E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS21185 e17584b5fee0649d173076d9a5d180b0 203 Pfam PF10263 SprT-like family 11 173 6.8E-31 T 23-04-2016 IPR006640 SprT-like NIDE_RS21185 e17584b5fee0649d173076d9a5d180b0 203 PANTHER PTHR21220 10 145 8.4E-23 T 23-04-2016 NIDE_RS21185 e17584b5fee0649d173076d9a5d180b0 203 SMART SM00731 6 175 9.4E-19 T 23-04-2016 IPR006640 SprT-like NIDE_RS10055 c3935a4b971fbe9495afd3cdfad472c0 532 Gene3D G3DSA:1.10.3210.10 258 408 9.1E-17 T 23-04-2016 IPR006674 HD domain NIDE_RS10055 c3935a4b971fbe9495afd3cdfad472c0 532 SUPERFAMILY SSF109604 272 448 4.83E-30 T 23-04-2016 NIDE_RS10055 c3935a4b971fbe9495afd3cdfad472c0 532 SMART SM00471 278 417 2.7E-10 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS10055 c3935a4b971fbe9495afd3cdfad472c0 532 Pfam PF01966 HD domain 284 408 1.8E-10 T 23-04-2016 IPR006674 HD domain NIDE_RS16355 a107a37c48ac2a96acac5e09d707078c 81 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 77 6.9E-14 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 NIDE_RS16355 a107a37c48ac2a96acac5e09d707078c 81 SUPERFAMILY SSF52833 1 80 1.41E-18 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS16355 a107a37c48ac2a96acac5e09d707078c 81 Gene3D G3DSA:3.40.30.10 3 79 1.0E-12 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 315 6.76E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 284 299 6.76E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 Gene3D G3DSA:1.10.10.60 213 269 7.4E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 PANTHER PTHR11019:SF77 48 121 1.8E-51 T 23-04-2016 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 PANTHER PTHR11019:SF77 137 323 1.8E-51 T 23-04-2016 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 SUPERFAMILY SSF46689 215 266 4.57E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 Gene3D G3DSA:1.10.10.60 270 319 1.6E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 PANTHER PTHR11019 48 121 1.8E-51 T 23-04-2016 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 PANTHER PTHR11019 137 323 1.8E-51 T 23-04-2016 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 SMART SM00342 232 315 4.9E-26 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 Gene3D G3DSA:2.60.120.280 50 92 8.4E-5 T 23-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 SUPERFAMILY SSF46689 268 318 2.82E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 Pfam PF12833 Helix-turn-helix domain 238 316 1.8E-20 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 NIDE_RS12830 5e8793cf017bc9b8d0e4ceec18ddb87b 341 Pfam PF12852 Cupin 2 200 6.9E-41 T 23-04-2016 IPR032783 AraC-type transcription regulator, ligand-binding domain NIDE_RS17515 4e62f3ac7fdc9a25a9b0cf83bad8fbf9 93 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 3 93 6.1E-21 T 23-04-2016 IPR007711 Toxin HigB-1 NIDE_RS17515 4e62f3ac7fdc9a25a9b0cf83bad8fbf9 93 PANTHER PTHR40266:SF2 1 93 1.4E-36 T 23-04-2016 NIDE_RS17515 4e62f3ac7fdc9a25a9b0cf83bad8fbf9 93 SUPERFAMILY SSF143011 1 93 6.08E-16 T 23-04-2016 NIDE_RS17515 4e62f3ac7fdc9a25a9b0cf83bad8fbf9 93 PANTHER PTHR40266 1 93 1.4E-36 T 23-04-2016 NIDE_RS04495 64651e65fa7cfc0c4a876520b09bd60f 418 Gene3D G3DSA:3.65.10.10 21 219 4.7E-65 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 NIDE_RS04495 64651e65fa7cfc0c4a876520b09bd60f 418 PANTHER PTHR21090 1 414 7.5E-207 T 23-04-2016 NIDE_RS04495 64651e65fa7cfc0c4a876520b09bd60f 418 PANTHER PTHR21090:SF19 1 414 7.5E-207 T 23-04-2016 NIDE_RS04495 64651e65fa7cfc0c4a876520b09bd60f 418 SUPERFAMILY SSF55205 1 416 1.01E-140 T 23-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 NIDE_RS04495 64651e65fa7cfc0c4a876520b09bd60f 418 Gene3D G3DSA:3.65.10.10 220 414 2.7E-62 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 NIDE_RS04495 64651e65fa7cfc0c4a876520b09bd60f 418 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 414 1.5E-177 T 23-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS04495 64651e65fa7cfc0c4a876520b09bd60f 418 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 415 46.775 T 23-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS04495 64651e65fa7cfc0c4a876520b09bd60f 418 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 404 6.1E-104 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 NIDE_RS01500 66669e25c026b889721fa820301db197 288 SUPERFAMILY SSF102405 32 76 3.51E-52 T 23-04-2016 NIDE_RS01500 66669e25c026b889721fa820301db197 288 SUPERFAMILY SSF102405 113 278 3.51E-52 T 23-04-2016 NIDE_RS01500 66669e25c026b889721fa820301db197 288 Pfam PF03641 Possible lysine decarboxylase 148 277 2.7E-31 T 23-04-2016 IPR031100 LOG family NIDE_RS01500 66669e25c026b889721fa820301db197 288 Gene3D G3DSA:3.40.50.450 114 280 1.6E-63 T 23-04-2016 NIDE_RS01500 66669e25c026b889721fa820301db197 288 Gene3D G3DSA:3.40.50.450 43 75 1.6E-63 T 23-04-2016 NIDE_RS01500 66669e25c026b889721fa820301db197 288 PANTHER PTHR31223:SF1 112 278 6.5E-58 T 23-04-2016 NIDE_RS01500 66669e25c026b889721fa820301db197 288 PANTHER PTHR31223 112 278 6.5E-58 T 23-04-2016 NIDE_RS01500 66669e25c026b889721fa820301db197 288 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 112 278 2.9E-30 T 23-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG NIDE_RS18880 59bbae8362dd75ed1aff9b9c87941b11 115 SUPERFAMILY SSF54862 5 86 3.94E-14 T 23-04-2016 NIDE_RS18880 59bbae8362dd75ed1aff9b9c87941b11 115 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIDE_RS18880 59bbae8362dd75ed1aff9b9c87941b11 115 Gene3D G3DSA:3.30.70.20 4 87 1.2E-13 T 23-04-2016 NIDE_RS18880 59bbae8362dd75ed1aff9b9c87941b11 115 PANTHER PTHR24960:SF38 1 94 1.3E-19 T 23-04-2016 NIDE_RS18880 59bbae8362dd75ed1aff9b9c87941b11 115 PANTHER PTHR24960 1 94 1.3E-19 T 23-04-2016 NIDE_RS18880 59bbae8362dd75ed1aff9b9c87941b11 115 Pfam PF12838 4Fe-4S dicluster domain 9 75 2.5E-8 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIDE_RS17745 49821af16e31a46058dc8e154ad9baad 156 SUPERFAMILY SSF47175 57 151 1.53E-6 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 Pfam PF01795 MraW methylase family 9 303 3.3E-107 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 Gene3D G3DSA:3.40.50.150 10 115 8.2E-48 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 Gene3D G3DSA:3.40.50.150 223 305 8.2E-48 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 Gene3D G3DSA:1.10.150.170 117 222 1.7E-37 T 23-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 SUPERFAMILY SSF53335 10 118 4.31E-47 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 SUPERFAMILY SSF53335 220 303 4.31E-47 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 SUPERFAMILY SSF81799 119 220 2.62E-34 T 23-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 PANTHER PTHR11265:SF0 10 305 3.7E-132 T 23-04-2016 NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 PANTHER PTHR11265 10 305 3.7E-132 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 PIRSF PIRSF004486 4 304 3.0E-104 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 10 303 37.153 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS03450 26df8c9269c57aebbc387268ea40cb7e 309 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 8 302 5.0E-100 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 NIDE_RS16475 2ebae17439133dac5e67969668e2bad8 316 PANTHER PTHR14194:SF46 1 313 8.5E-78 T 23-04-2016 NIDE_RS16475 2ebae17439133dac5e67969668e2bad8 316 Pfam PF05368 NmrA-like family 7 251 3.5E-47 T 23-04-2016 IPR008030 NmrA-like domain NIDE_RS16475 2ebae17439133dac5e67969668e2bad8 316 Gene3D G3DSA:3.40.50.720 1 246 1.1E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16475 2ebae17439133dac5e67969668e2bad8 316 SUPERFAMILY SSF51735 4 288 7.08E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16475 2ebae17439133dac5e67969668e2bad8 316 PANTHER PTHR14194 1 313 8.5E-78 T 23-04-2016 NIDE_RS00605 31abd3fd9c0f37162cad2fdb8e93b039 189 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 49 125 4.3E-5 T 23-04-2016 IPR015032 MTH538 TIR-like domain NIDE_RS03360 022a4f97627672257d311f827f06b6df 364 SUPERFAMILY SSF53383 2 357 3.45E-81 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS03360 022a4f97627672257d311f827f06b6df 364 PANTHER PTHR21152:SF21 2 356 1.7E-91 T 23-04-2016 NIDE_RS03360 022a4f97627672257d311f827f06b6df 364 PIRSF PIRSF000524 1 363 4.2E-75 T 23-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 NIDE_RS03360 022a4f97627672257d311f827f06b6df 364 Pfam PF00266 Aminotransferase class-V 24 326 3.7E-21 T 23-04-2016 IPR000192 Aminotransferase class V domain NIDE_RS03360 022a4f97627672257d311f827f06b6df 364 PANTHER PTHR21152 2 356 1.7E-91 T 23-04-2016 NIDE_RS03360 022a4f97627672257d311f827f06b6df 364 Gene3D G3DSA:3.90.1150.10 252 356 2.8E-33 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS03360 022a4f97627672257d311f827f06b6df 364 Gene3D G3DSA:3.40.640.10 13 251 3.8E-48 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS13700 158997918eb9d3eaab8de87f82e38ce5 411 PANTHER PTHR12526 1 408 4.6E-41 T 23-04-2016 NIDE_RS13700 158997918eb9d3eaab8de87f82e38ce5 411 Gene3D G3DSA:3.40.50.2000 202 385 1.9E-23 T 23-04-2016 NIDE_RS13700 158997918eb9d3eaab8de87f82e38ce5 411 Pfam PF13439 Glycosyltransferase Family 4 13 213 1.4E-9 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS13700 158997918eb9d3eaab8de87f82e38ce5 411 Pfam PF00534 Glycosyl transferases group 1 230 383 9.7E-21 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS13700 158997918eb9d3eaab8de87f82e38ce5 411 SUPERFAMILY SSF53756 3 409 1.51E-58 T 23-04-2016 NIDE_RS13160 6cef57a71724ce3d96b2b400e3c4b244 412 PANTHER PTHR12526 1 310 6.0E-36 T 23-04-2016 NIDE_RS13160 6cef57a71724ce3d96b2b400e3c4b244 412 PANTHER PTHR12526 327 404 6.0E-36 T 23-04-2016 NIDE_RS13160 6cef57a71724ce3d96b2b400e3c4b244 412 Gene3D G3DSA:3.40.50.2000 200 382 2.7E-10 T 23-04-2016 NIDE_RS13160 6cef57a71724ce3d96b2b400e3c4b244 412 SUPERFAMILY SSF53756 2 403 6.28E-46 T 23-04-2016 NIDE_RS13160 6cef57a71724ce3d96b2b400e3c4b244 412 Pfam PF00534 Glycosyl transferases group 1 207 382 9.6E-14 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS08370 7d83aff6a208955311cb7858538b7675 425 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 8.62E-17 T 23-04-2016 NIDE_RS08370 7d83aff6a208955311cb7858538b7675 425 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 8.62E-17 T 23-04-2016 NIDE_RS08370 7d83aff6a208955311cb7858538b7675 425 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 8.62E-17 T 23-04-2016 NIDE_RS08370 7d83aff6a208955311cb7858538b7675 425 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 8.62E-17 T 23-04-2016 NIDE_RS08370 7d83aff6a208955311cb7858538b7675 425 Pfam PF01494 FAD binding domain 7 318 4.0E-30 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 NIDE_RS08370 7d83aff6a208955311cb7858538b7675 425 PANTHER PTHR13789 6 398 3.3E-48 T 23-04-2016 NIDE_RS08370 7d83aff6a208955311cb7858538b7675 425 Gene3D G3DSA:3.50.50.60 273 356 2.4E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS08370 7d83aff6a208955311cb7858538b7675 425 Gene3D G3DSA:3.50.50.60 7 185 2.4E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS08370 7d83aff6a208955311cb7858538b7675 425 SUPERFAMILY SSF51905 272 384 1.19E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS08370 7d83aff6a208955311cb7858538b7675 425 SUPERFAMILY SSF51905 7 180 1.19E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS08535 bd710119b9171eb19fa95f628f990062 89 Gene3D G3DSA:3.30.70.790 13 82 1.7E-16 T 23-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 NIDE_RS08535 bd710119b9171eb19fa95f628f990062 89 Pfam PF09413 Putative prokaryotic signal transducing protein 13 75 9.8E-9 T 23-04-2016 IPR018551 Domain of unknown function DUF2007 NIDE_RS08535 bd710119b9171eb19fa95f628f990062 89 SUPERFAMILY SSF54913 12 77 8.45E-10 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta NIDE_RS13615 4cc9993172b710ba9bf058d8d1ce2c34 160 PANTHER PTHR32125 5 159 1.2E-42 T 23-04-2016 NIDE_RS13615 4cc9993172b710ba9bf058d8d1ce2c34 160 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 4 159 32.011 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS13615 4cc9993172b710ba9bf058d8d1ce2c34 160 SUPERFAMILY SSF69765 4 159 2.62E-58 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS13615 4cc9993172b710ba9bf058d8d1ce2c34 160 Gene3D G3DSA:3.30.1330.50 3 159 3.8E-61 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS13615 4cc9993172b710ba9bf058d8d1ce2c34 160 Pfam PF02542 YgbB family 4 158 4.9E-57 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS13615 4cc9993172b710ba9bf058d8d1ce2c34 160 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 5 158 3.0E-58 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 NIDE_RS02470 d69162c31e7f6a1d43d36b1ce654b0de 337 Pfam PF01699 Sodium/calcium exchanger protein 6 159 1.3E-12 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 NIDE_RS02470 d69162c31e7f6a1d43d36b1ce654b0de 337 Pfam PF01699 Sodium/calcium exchanger protein 198 333 2.3E-10 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 NIDE_RS17105 34a1148146727e8f464a03b21ecf695f 576 SUPERFAMILY SSF90123 6 315 1.23E-79 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS17105 34a1148146727e8f464a03b21ecf695f 576 PANTHER PTHR24221 1 573 2.5E-254 T 23-04-2016 NIDE_RS17105 34a1148146727e8f464a03b21ecf695f 576 Gene3D G3DSA:1.20.1560.10 6 315 1.3E-80 T 23-04-2016 NIDE_RS17105 34a1148146727e8f464a03b21ecf695f 576 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS17105 34a1148146727e8f464a03b21ecf695f 576 Pfam PF00664 ABC transporter transmembrane region 18 289 1.5E-56 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 NIDE_RS17105 34a1148146727e8f464a03b21ecf695f 576 SUPERFAMILY SSF52540 325 569 4.69E-94 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17105 34a1148146727e8f464a03b21ecf695f 576 SMART SM00382 360 546 9.6E-21 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS17105 34a1148146727e8f464a03b21ecf695f 576 Pfam PF00005 ABC transporter 351 500 3.1E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS17105 34a1148146727e8f464a03b21ecf695f 576 Gene3D G3DSA:3.40.50.300 335 564 2.1E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS20955 fe35d05a351cf3fcc2aee95b86bc4f39 175 Pfam PF13633 Prokaryotic N-terminal methylation site 7 32 1.1E-10 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS20955 fe35d05a351cf3fcc2aee95b86bc4f39 175 SUPERFAMILY SSF54523 10 71 1.88E-18 T 23-04-2016 NIDE_RS20955 fe35d05a351cf3fcc2aee95b86bc4f39 175 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 30 5.2E-10 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS20955 fe35d05a351cf3fcc2aee95b86bc4f39 175 PANTHER PTHR30093 1 52 5.6E-17 T 23-04-2016 NIDE_RS20955 fe35d05a351cf3fcc2aee95b86bc4f39 175 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS20955 fe35d05a351cf3fcc2aee95b86bc4f39 175 Gene3D G3DSA:3.30.700.10 10 68 2.6E-13 T 23-04-2016 NIDE_RS13070 a6dde5bf5c4f62572e42981185be9305 374 Gene3D G3DSA:3.40.50.2000 155 348 1.7E-35 T 23-04-2016 NIDE_RS13070 a6dde5bf5c4f62572e42981185be9305 374 SUPERFAMILY SSF53756 10 368 2.65E-90 T 23-04-2016 NIDE_RS13070 a6dde5bf5c4f62572e42981185be9305 374 PANTHER PTHR12526 10 371 4.2E-74 T 23-04-2016 NIDE_RS13070 a6dde5bf5c4f62572e42981185be9305 374 Pfam PF13439 Glycosyltransferase Family 4 19 172 3.9E-24 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS13070 a6dde5bf5c4f62572e42981185be9305 374 Pfam PF00534 Glycosyl transferases group 1 185 348 4.3E-37 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS19195 76a6d94afbecef0cadb1220554ef5167 433 PANTHER PTHR10859 14 268 9.9E-38 T 23-04-2016 NIDE_RS19195 76a6d94afbecef0cadb1220554ef5167 433 Gene3D G3DSA:3.90.550.10 34 196 6.1E-6 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS19195 76a6d94afbecef0cadb1220554ef5167 433 PANTHER PTHR10859:SF93 14 268 9.9E-38 T 23-04-2016 NIDE_RS19195 76a6d94afbecef0cadb1220554ef5167 433 Pfam PF00535 Glycosyl transferase family 2 34 175 2.0E-5 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS19195 76a6d94afbecef0cadb1220554ef5167 433 SUPERFAMILY SSF53448 32 420 1.93E-63 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS17930 3f54d004c81691fe7a200dcc515cc7bc 310 Pfam PF03781 Sulfatase-modifying factor enzyme 1 57 288 3.9E-54 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS17930 3f54d004c81691fe7a200dcc515cc7bc 310 Gene3D G3DSA:3.90.1580.10 53 290 3.0E-69 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS17930 3f54d004c81691fe7a200dcc515cc7bc 310 PANTHER PTHR23150 59 290 4.6E-64 T 23-04-2016 NIDE_RS17930 3f54d004c81691fe7a200dcc515cc7bc 310 SUPERFAMILY SSF56436 55 289 1.83E-68 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS20930 7949d4e90ef0e4d21a396be3ba62e8e8 119 Pfam PF03413 Peptidase propeptide and YPEB domain 45 104 2.5E-13 T 23-04-2016 IPR025711 PepSY domain NIDE_RS19340 38c6383edfce061670872225ff3a4527 228 PANTHER PTHR18901 13 195 7.4E-60 T 23-04-2016 NIDE_RS19340 38c6383edfce061670872225ff3a4527 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 21 196 5.8E-10 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19340 38c6383edfce061670872225ff3a4527 228 PANTHER PTHR18901:SF7 13 195 7.4E-60 T 23-04-2016 NIDE_RS19340 38c6383edfce061670872225ff3a4527 228 Gene3D G3DSA:3.40.50.1000 18 222 2.8E-22 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS19340 38c6383edfce061670872225ff3a4527 228 SUPERFAMILY SSF56784 14 209 2.85E-33 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS20365 aa04979c14181c58fe517f8c9582c8da 156 Pfam PF03968 OstA-like protein 2 136 3.8E-14 T 23-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal NIDE_RS20365 aa04979c14181c58fe517f8c9582c8da 156 Gene3D G3DSA:2.60.450.10 1 38 1.2E-26 T 23-04-2016 NIDE_RS20365 aa04979c14181c58fe517f8c9582c8da 156 Gene3D G3DSA:2.60.450.10 75 145 1.2E-26 T 23-04-2016 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 SUPERFAMILY SSF51735 5 338 2.41E-93 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 PRINTS PR01713 Nucleotide sugar epimerase signature 300 317 4.0E-29 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 PRINTS PR01713 Nucleotide sugar epimerase signature 221 236 4.0E-29 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 PRINTS PR01713 Nucleotide sugar epimerase signature 34 50 4.0E-29 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 PRINTS PR01713 Nucleotide sugar epimerase signature 261 276 4.0E-29 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 Pfam PF01370 NAD dependent epimerase/dehydratase family 8 265 9.5E-56 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 PANTHER PTHR10366:SF77 260 339 2.1E-184 T 23-04-2016 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 PANTHER PTHR10366:SF77 7 241 2.1E-184 T 23-04-2016 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 PANTHER PTHR10366 260 339 2.1E-184 T 23-04-2016 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 PANTHER PTHR10366 7 241 2.1E-184 T 23-04-2016 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 Gene3D G3DSA:3.40.50.720 8 203 1.1E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 Gene3D G3DSA:3.90.25.10 204 223 6.5E-21 T 23-04-2016 NIDE_RS19035 a6a0f6f68f9257b14bb3ca8ea218cf3e 340 Gene3D G3DSA:3.90.25.10 265 336 6.5E-21 T 23-04-2016 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 Pfam PF01467 Cytidylyltransferase-like 5 132 1.4E-22 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 PANTHER PTHR21342 1 158 4.1E-77 T 23-04-2016 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 63 1.3E-17 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 SUPERFAMILY SSF52374 1 155 5.9E-45 T 23-04-2016 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 Gene3D G3DSA:3.40.50.620 1 156 3.1E-55 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 PANTHER PTHR21342:SF1 1 158 4.1E-77 T 23-04-2016 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 156 2.6E-59 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 8.9E-53 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 8.9E-53 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 8.9E-53 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 8.9E-53 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 8.9E-53 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 NIDE_RS11780 a6e17ac068d18bc7d017454f0e5f9ffc 162 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 35.174 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 NIDE_RS12735 088058037f1b7e2e780fde6a41962df0 144 Pfam PF00571 CBS domain 5 56 2.5E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS12735 088058037f1b7e2e780fde6a41962df0 144 Pfam PF00571 CBS domain 69 120 3.7E-7 T 23-04-2016 IPR000644 CBS domain NIDE_RS12735 088058037f1b7e2e780fde6a41962df0 144 SMART SM00116 76 123 0.0013 T 23-04-2016 IPR000644 CBS domain NIDE_RS12735 088058037f1b7e2e780fde6a41962df0 144 SMART SM00116 11 58 0.0016 T 23-04-2016 IPR000644 CBS domain NIDE_RS12735 088058037f1b7e2e780fde6a41962df0 144 PANTHER PTHR11911:SF68 4 119 5.2E-19 T 23-04-2016 NIDE_RS12735 088058037f1b7e2e780fde6a41962df0 144 Gene3D G3DSA:3.10.580.10 4 121 2.0E-29 T 23-04-2016 NIDE_RS12735 088058037f1b7e2e780fde6a41962df0 144 SUPERFAMILY SSF54631 3 122 4.55E-27 T 23-04-2016 NIDE_RS12735 088058037f1b7e2e780fde6a41962df0 144 PANTHER PTHR11911 4 119 5.2E-19 T 23-04-2016 NIDE_RS09620 b2b55e0daad159d240fde77f69e10bdb 267 PANTHER PTHR31611 1 228 1.7E-27 T 23-04-2016 NIDE_RS09620 b2b55e0daad159d240fde77f69e10bdb 267 Pfam PF03824 High-affinity nickel-transport protein 8 258 2.5E-17 T 23-04-2016 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 NIDE_RS13015 70e32c7f88a85a3f31ec97236642d59b 263 Pfam PF01695 IstB-like ATP binding protein 56 232 3.8E-64 T 23-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 NIDE_RS13015 70e32c7f88a85a3f31ec97236642d59b 263 PIRSF PIRSF003073 1 254 5.0E-91 T 23-04-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein NIDE_RS13015 70e32c7f88a85a3f31ec97236642d59b 263 Gene3D G3DSA:3.40.50.300 68 231 1.7E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13015 70e32c7f88a85a3f31ec97236642d59b 263 SMART SM00382 101 233 1.0E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS13015 70e32c7f88a85a3f31ec97236642d59b 263 SUPERFAMILY SSF52540 68 244 1.88E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13015 70e32c7f88a85a3f31ec97236642d59b 263 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 192 206 4.1E-5 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS13015 70e32c7f88a85a3f31ec97236642d59b 263 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 105 123 4.1E-5 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS13015 70e32c7f88a85a3f31ec97236642d59b 263 PANTHER PTHR30050 7 248 2.5E-74 T 23-04-2016 NIDE_RS11555 ac1df30e47b54b59375f2b1955604aea 121 Gene3D G3DSA:2.40.10.220 2 99 4.9E-7 T 23-04-2016 NIDE_RS11555 ac1df30e47b54b59375f2b1955604aea 121 SUPERFAMILY SSF141371 1 104 1.14E-14 T 23-04-2016 NIDE_RS11555 ac1df30e47b54b59375f2b1955604aea 121 Pfam PF07238 PilZ domain 3 99 1.0E-12 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS08405 e6c7ddb6faaaf6f8c5c567cd40195687 128 Gene3D G3DSA:3.10.450.50 2 125 9.7E-28 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS08405 e6c7ddb6faaaf6f8c5c567cd40195687 128 Pfam PF12680 SnoaL-like domain 10 111 3.9E-19 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain NIDE_RS08405 e6c7ddb6faaaf6f8c5c567cd40195687 128 SUPERFAMILY SSF54427 7 127 2.73E-27 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS01575 300df0af1fb9e3d390942681d80e49ed 380 PANTHER PTHR34351:SF1 15 363 9.4E-49 T 23-04-2016 NIDE_RS01575 300df0af1fb9e3d390942681d80e49ed 380 Pfam PF01882 Protein of unknown function DUF58 208 287 1.5E-19 T 23-04-2016 IPR002881 Domain of unknown function DUF58 NIDE_RS01575 300df0af1fb9e3d390942681d80e49ed 380 PANTHER PTHR34351 15 363 9.4E-49 T 23-04-2016 NIDE_RS20820 d7a5be92a333809202612135cfe35249 328 Gene3D G3DSA:2.60.40.1590 43 138 6.9E-5 T 23-04-2016 NIDE_RS20820 d7a5be92a333809202612135cfe35249 328 Gene3D G3DSA:2.70.70.10 145 293 1.3E-40 T 23-04-2016 NIDE_RS20820 d7a5be92a333809202612135cfe35249 328 Pfam PF01551 Peptidase family M23 194 288 1.9E-26 T 23-04-2016 IPR016047 Peptidase M23 NIDE_RS20820 d7a5be92a333809202612135cfe35249 328 PANTHER PTHR21666 137 292 1.7E-33 T 23-04-2016 NIDE_RS20820 d7a5be92a333809202612135cfe35249 328 SUPERFAMILY SSF51261 137 292 1.2E-45 T 23-04-2016 IPR011055 Duplicated hybrid motif NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 211 510 2.7E-104 T 23-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 Gene3D G3DSA:1.10.10.10 3 81 1.1E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 SUPERFAMILY SSF46785 4 85 2.54E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 Pfam PF01409 tRNA synthetases class II core domain (F) 238 509 6.7E-84 T 23-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 Gene3D G3DSA:3.30.930.10 210 510 1.4E-91 T 23-04-2016 NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 PANTHER PTHR11538 344 511 2.6E-106 T 23-04-2016 NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 PANTHER PTHR11538 7 307 2.6E-106 T 23-04-2016 NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 PANTHER PTHR11538:SF40 344 511 2.6E-106 T 23-04-2016 NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 PANTHER PTHR11538:SF40 7 307 2.6E-106 T 23-04-2016 NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 Hamap MF_00282 Phenylalanine--tRNA ligase alpha subunit [pheS]. 3 511 34.904 T 23-04-2016 IPR022917 Phenylalanine-tRNA ligase alpha subunit, bacterial/archaeal GO:0004826 KEGG: 00970+6.1.1.20 NIDE_RS01830 15b84138c2fbda5864238af80a2914ea 514 SUPERFAMILY SSF55681 240 510 4.29E-60 T 23-04-2016 NIDE_RS17455 226c283302cb68b10511bb9458cf56ff 208 PIRSF PIRSF004649 7 208 4.6E-51 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC NIDE_RS17455 226c283302cb68b10511bb9458cf56ff 208 Gene3D G3DSA:1.10.10.640 173 203 4.3E-17 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical NIDE_RS17455 226c283302cb68b10511bb9458cf56ff 208 Gene3D G3DSA:1.10.10.640 77 117 4.3E-17 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical NIDE_RS17455 226c283302cb68b10511bb9458cf56ff 208 Gene3D G3DSA:3.10.450.50 120 172 1.5E-16 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS17455 226c283302cb68b10511bb9458cf56ff 208 Gene3D G3DSA:3.10.450.50 32 76 1.5E-16 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS17455 226c283302cb68b10511bb9458cf56ff 208 PANTHER PTHR36573 6 203 1.6E-41 T 23-04-2016 NIDE_RS17455 226c283302cb68b10511bb9458cf56ff 208 Pfam PF05494 MlaC protein 40 199 5.6E-43 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC NIDE_RS19310 1cea298eef02d535fe1a46e0aba876d7 91 SUPERFAMILY SSF46992 5 87 8.76E-25 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS19310 1cea298eef02d535fe1a46e0aba876d7 91 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 86 15.546 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS19310 1cea298eef02d535fe1a46e0aba876d7 91 TIGRFAM TIGR00029 S20: ribosomal protein bS20 5 87 2.0E-19 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS19310 1cea298eef02d535fe1a46e0aba876d7 91 Gene3D G3DSA:1.20.58.110 5 87 4.3E-26 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS19310 1cea298eef02d535fe1a46e0aba876d7 91 PANTHER PTHR33398 5 87 2.8E-21 T 23-04-2016 NIDE_RS19310 1cea298eef02d535fe1a46e0aba876d7 91 Pfam PF01649 Ribosomal protein S20 5 85 3.2E-23 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS19310 1cea298eef02d535fe1a46e0aba876d7 91 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 17 87 3.0E-10 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS15620 902081e1ad2db167cebcc32ba2df9a96 331 SUPERFAMILY SSF52172 1 135 8.4E-35 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS15620 902081e1ad2db167cebcc32ba2df9a96 331 Pfam PF00989 PAS fold 143 247 1.2E-11 T 23-04-2016 IPR013767 PAS fold GO:0006355 NIDE_RS15620 902081e1ad2db167cebcc32ba2df9a96 331 Gene3D G3DSA:3.30.450.20 130 247 2.3E-18 T 23-04-2016 NIDE_RS15620 902081e1ad2db167cebcc32ba2df9a96 331 SUPERFAMILY SSF55785 122 247 1.34E-16 T 23-04-2016 IPR000014 PAS domain NIDE_RS15620 902081e1ad2db167cebcc32ba2df9a96 331 SMART SM00091 134 200 3.1E-5 T 23-04-2016 IPR000014 PAS domain NIDE_RS15620 902081e1ad2db167cebcc32ba2df9a96 331 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 131 248 2.3E-10 T 23-04-2016 IPR000014 PAS domain NIDE_RS15620 902081e1ad2db167cebcc32ba2df9a96 331 PANTHER PTHR26402 4 122 4.0E-28 T 23-04-2016 NIDE_RS15620 902081e1ad2db167cebcc32ba2df9a96 331 SMART SM00448 4 116 1.6E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS15620 902081e1ad2db167cebcc32ba2df9a96 331 Gene3D G3DSA:3.40.50.2300 2 128 1.4E-33 T 23-04-2016 NIDE_RS15620 902081e1ad2db167cebcc32ba2df9a96 331 Pfam PF00072 Response regulator receiver domain 6 116 3.5E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08795 f5d0962dbebeb19f3d8b568c9775bc5f 443 PANTHER PTHR11918 6 431 2.0E-113 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS08795 f5d0962dbebeb19f3d8b568c9775bc5f 443 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 6 418 1.8E-120 T 23-04-2016 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 NIDE_RS08795 f5d0962dbebeb19f3d8b568c9775bc5f 443 Pfam PF00919 Uncharacterized protein family UPF0004 4 98 1.9E-21 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 NIDE_RS08795 f5d0962dbebeb19f3d8b568c9775bc5f 443 SMART SM00729 145 360 1.8E-48 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS08795 f5d0962dbebeb19f3d8b568c9775bc5f 443 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 422 1.8E-115 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 NIDE_RS08795 f5d0962dbebeb19f3d8b568c9775bc5f 443 Pfam PF04055 Radical SAM superfamily 151 314 4.2E-22 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS08795 f5d0962dbebeb19f3d8b568c9775bc5f 443 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 149 169 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 NIDE_RS08795 f5d0962dbebeb19f3d8b568c9775bc5f 443 PANTHER PTHR11918:SF45 6 431 2.0E-113 T 23-04-2016 NIDE_RS08795 f5d0962dbebeb19f3d8b568c9775bc5f 443 Gene3D G3DSA:3.80.30.20 144 373 1.4E-67 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS08795 f5d0962dbebeb19f3d8b568c9775bc5f 443 SUPERFAMILY SSF102114 107 364 1.57E-55 T 23-04-2016 NIDE_RS00050 787c220e128b892278697d41e2eeb7ff 294 PIRSF PIRSF006232 14 294 1.8E-93 T 23-04-2016 IPR012093 Pirin NIDE_RS00050 787c220e128b892278697d41e2eeb7ff 294 SUPERFAMILY SSF51182 14 292 5.91E-81 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS00050 787c220e128b892278697d41e2eeb7ff 294 Pfam PF05726 Pirin C-terminal cupin domain 190 291 9.7E-30 T 23-04-2016 IPR008778 Pirin, C-terminal domain NIDE_RS00050 787c220e128b892278697d41e2eeb7ff 294 Pfam PF02678 Pirin 27 134 1.4E-33 T 23-04-2016 IPR003829 Pirin, N-terminal domain NIDE_RS00050 787c220e128b892278697d41e2eeb7ff 294 PANTHER PTHR13903 1 291 5.6E-137 T 23-04-2016 IPR012093 Pirin NIDE_RS00050 787c220e128b892278697d41e2eeb7ff 294 PANTHER PTHR13903:SF12 1 291 5.6E-137 T 23-04-2016 NIDE_RS00050 787c220e128b892278697d41e2eeb7ff 294 Gene3D G3DSA:2.60.120.10 22 264 5.2E-77 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS03700 baa1d7fda8434dffd68d3c90590cf3ce 382 Pfam PF08495 FIST N domain 28 217 2.3E-34 T 23-04-2016 IPR013702 FIST domain, N-terminal NIDE_RS03700 baa1d7fda8434dffd68d3c90590cf3ce 382 SMART SM01204 219 362 1.9E-38 T 23-04-2016 IPR019494 FIST, C-domain NIDE_RS03700 baa1d7fda8434dffd68d3c90590cf3ce 382 Pfam PF10442 FIST C domain 219 361 4.0E-27 T 23-04-2016 IPR019494 FIST, C-domain NIDE_RS03700 baa1d7fda8434dffd68d3c90590cf3ce 382 PANTHER PTHR40252 28 381 2.6E-75 T 23-04-2016 NIDE_RS03700 baa1d7fda8434dffd68d3c90590cf3ce 382 SMART SM00897 25 218 5.2E-40 T 23-04-2016 IPR013702 FIST domain, N-terminal NIDE_RS03700 baa1d7fda8434dffd68d3c90590cf3ce 382 PANTHER PTHR40252:SF1 28 381 2.6E-75 T 23-04-2016 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 ProSitePatterns PS00482 Dihydroorotase signature 1. 58 66 - T 23-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 Gene3D G3DSA:2.30.40.10 3 69 5.1E-25 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 SUPERFAMILY SSF51556 55 366 2.42E-111 T 23-04-2016 IPR032466 Metal-dependent hydrolase NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 PANTHER PTHR11647 1 425 2.4E-191 T 23-04-2016 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 Pfam PF01979 Amidohydrolase family 51 420 8.1E-38 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 PANTHER PTHR11647:SF70 1 425 2.4E-191 T 23-04-2016 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 Gene3D G3DSA:3.20.20.140 70 406 9.4E-115 T 23-04-2016 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 ProSitePatterns PS00483 Dihydroorotase signature 2. 303 314 - T 23-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 SUPERFAMILY SSF51338 1 54 6.68E-33 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 SUPERFAMILY SSF51338 366 422 6.68E-33 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 Hamap MF_00220_B Dihydroorotase [pyrC]. 2 424 44.262 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS11650 4dfd1c1140470c76e167df9edc66b57d 430 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 20 422 2.7E-137 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS19110 f0b8da3b27ef3926b5a2f548bc51e511 168 Pfam PF11220 Protein of unknown function (DUF3015) 24 165 1.4E-46 T 23-04-2016 IPR021383 Protein of unknown function DUF3015 NIDE_RS15330 00d59a92ea35cb8cb3f8590c42d5a7d8 305 PANTHER PTHR10584:SF179 3 287 1.8E-55 T 23-04-2016 NIDE_RS15330 00d59a92ea35cb8cb3f8590c42d5a7d8 305 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 229 242 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 NIDE_RS15330 00d59a92ea35cb8cb3f8590c42d5a7d8 305 SUPERFAMILY SSF53613 2 288 6.24E-56 T 23-04-2016 IPR029056 Ribokinase-like NIDE_RS15330 00d59a92ea35cb8cb3f8590c42d5a7d8 305 Pfam PF00294 pfkB family carbohydrate kinase 3 273 1.6E-27 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB NIDE_RS15330 00d59a92ea35cb8cb3f8590c42d5a7d8 305 Gene3D G3DSA:3.40.1190.20 2 293 3.7E-53 T 23-04-2016 IPR029056 Ribokinase-like NIDE_RS15330 00d59a92ea35cb8cb3f8590c42d5a7d8 305 PANTHER PTHR10584 3 287 1.8E-55 T 23-04-2016 NIDE_RS06915 54f1b67e7690c6f258abcc8941c50504 289 Pfam PF00487 Fatty acid desaturase 49 252 5.0E-23 T 23-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 NIDE_RS06915 54f1b67e7690c6f258abcc8941c50504 289 PANTHER PTHR11351 40 286 2.2E-97 T 23-04-2016 NIDE_RS06915 54f1b67e7690c6f258abcc8941c50504 289 PRINTS PR00075 Fatty acid desaturase family 1 signature 197 218 1.1E-36 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS06915 54f1b67e7690c6f258abcc8941c50504 289 PRINTS PR00075 Fatty acid desaturase family 1 signature 71 91 1.1E-36 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS06915 54f1b67e7690c6f258abcc8941c50504 289 PRINTS PR00075 Fatty acid desaturase family 1 signature 240 254 1.1E-36 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS06915 54f1b67e7690c6f258abcc8941c50504 289 PRINTS PR00075 Fatty acid desaturase family 1 signature 163 181 1.1E-36 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS06915 54f1b67e7690c6f258abcc8941c50504 289 PRINTS PR00075 Fatty acid desaturase family 1 signature 108 137 1.1E-36 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS06915 54f1b67e7690c6f258abcc8941c50504 289 PRINTS PR00075 Fatty acid desaturase family 1 signature 48 70 1.1E-36 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 NIDE_RS16545 01b5d00281e2ed26733cf0b303cca674 175 Gene3D G3DSA:3.40.50.1820 2 173 1.7E-45 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS16545 01b5d00281e2ed26733cf0b303cca674 175 SUPERFAMILY SSF53474 3 171 4.18E-37 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS16545 01b5d00281e2ed26733cf0b303cca674 175 Pfam PF06821 Serine hydrolase 3 169 1.3E-61 T 23-04-2016 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- NIDE_RS16725 1bfdb2295d8a7813e7210406fa62a03b 256 Pfam PF00571 CBS domain 135 189 3.5E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS16725 1bfdb2295d8a7813e7210406fa62a03b 256 Pfam PF00571 CBS domain 201 252 4.6E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS16725 1bfdb2295d8a7813e7210406fa62a03b 256 SMART SM00116 206 253 0.0015 T 23-04-2016 IPR000644 CBS domain NIDE_RS16725 1bfdb2295d8a7813e7210406fa62a03b 256 SMART SM00116 142 189 1.8 T 23-04-2016 IPR000644 CBS domain NIDE_RS16725 1bfdb2295d8a7813e7210406fa62a03b 256 SUPERFAMILY SSF54631 134 254 8.46E-26 T 23-04-2016 NIDE_RS16725 1bfdb2295d8a7813e7210406fa62a03b 256 PANTHER PTHR11911 135 250 7.1E-19 T 23-04-2016 NIDE_RS16725 1bfdb2295d8a7813e7210406fa62a03b 256 Gene3D G3DSA:3.10.580.10 134 252 5.6E-28 T 23-04-2016 NIDE_RS08495 394e1b90785308ed05c46f0791336cff 75 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 44 1.7E-14 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NIDE_RS08495 394e1b90785308ed05c46f0791336cff 75 SMART SM00834 1 40 8.1E-13 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NIDE_RS08495 394e1b90785308ed05c46f0791336cff 75 Pfam PF09723 Zinc ribbon domain 1 38 3.0E-12 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain NIDE_RS16170 3a759019b797b224854fb0283a04de0f 274 Pfam PF03476 MOSC N-terminal beta barrel domain 10 59 1.9E-10 T 23-04-2016 IPR005303 MOSC, N-terminal beta barrel NIDE_RS16170 3a759019b797b224854fb0283a04de0f 274 SUPERFAMILY SSF50800 158 272 3.56E-23 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain NIDE_RS16170 3a759019b797b224854fb0283a04de0f 274 SUPERFAMILY SSF50800 8 60 3.56E-23 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain NIDE_RS16170 3a759019b797b224854fb0283a04de0f 274 Gene3D G3DSA:2.40.33.20 135 272 4.3E-6 T 23-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like NIDE_RS16170 3a759019b797b224854fb0283a04de0f 274 Pfam PF03473 MOSC domain 154 271 2.8E-15 T 23-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 NIDE_RS16170 3a759019b797b224854fb0283a04de0f 274 PANTHER PTHR14237 10 229 8.7E-16 T 23-04-2016 NIDE_RS00700 0fa8664b5e8dff5ac9068b379bf3c106 272 PANTHER PTHR34383 31 260 4.1E-115 T 23-04-2016 NIDE_RS00700 0fa8664b5e8dff5ac9068b379bf3c106 272 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 33 254 4.7E-74 T 23-04-2016 IPR022488 Polyphosphate kinase-2-related NIDE_RS00700 0fa8664b5e8dff5ac9068b379bf3c106 272 TIGRFAM TIGR03709 PPK2_rel_1: polyphosphate:nucleotide phosphotransferase, PPK2 family 2 261 1.3E-115 T 23-04-2016 IPR022300 Polyphosphate:nucleotide phosphotransferase, PPK2 GO:0006797|GO:0016776 NIDE_RS00700 0fa8664b5e8dff5ac9068b379bf3c106 272 SUPERFAMILY SSF52540 62 242 1.31E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00700 0fa8664b5e8dff5ac9068b379bf3c106 272 PIRSF PIRSF028756 10 268 2.8E-83 T 23-04-2016 IPR016898 Polyphosphate kinase 2 NIDE_RS00700 0fa8664b5e8dff5ac9068b379bf3c106 272 Gene3D G3DSA:3.40.50.300 2 261 2.0E-99 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00245 c7691480fca74d42ecf417c5bf1f77cc 225 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 44 187 9.5E-16 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 NIDE_RS00245 c7691480fca74d42ecf417c5bf1f77cc 225 Gene3D G3DSA:1.10.1670.10 151 203 2.4E-18 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal NIDE_RS00245 c7691480fca74d42ecf417c5bf1f77cc 225 PANTHER PTHR10242 8 203 1.4E-65 T 23-04-2016 NIDE_RS00245 c7691480fca74d42ecf417c5bf1f77cc 225 PANTHER PTHR10242:SF0 8 203 1.4E-65 T 23-04-2016 NIDE_RS00245 c7691480fca74d42ecf417c5bf1f77cc 225 SMART SM00478 47 203 1.9E-23 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 NIDE_RS00245 c7691480fca74d42ecf417c5bf1f77cc 225 Gene3D G3DSA:1.10.340.30 38 150 7.6E-31 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 NIDE_RS00245 c7691480fca74d42ecf417c5bf1f77cc 225 SUPERFAMILY SSF48150 27 201 7.68E-44 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 NIDE_RS03890 3f839b6c2a605a5a5d757a71b6e7623f 478 Pfam PF05140 ResB-like family 38 465 4.4E-99 T 23-04-2016 IPR007816 ResB-like domain NIDE_RS03890 3f839b6c2a605a5a5d757a71b6e7623f 478 PANTHER PTHR31566:SF0 24 478 1.1E-73 T 23-04-2016 NIDE_RS03890 3f839b6c2a605a5a5d757a71b6e7623f 478 PANTHER PTHR31566 24 478 1.1E-73 T 23-04-2016 NIDE_RS04325 4b7ba72714dfadf461f53f10a612a4d0 373 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 262 268 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NIDE_RS04325 4b7ba72714dfadf461f53f10a612a4d0 373 Pfam PF05175 Methyltransferase small domain 198 273 2.5E-11 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 NIDE_RS04325 4b7ba72714dfadf461f53f10a612a4d0 373 SUPERFAMILY SSF53335 159 311 1.61E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS04325 4b7ba72714dfadf461f53f10a612a4d0 373 Gene3D G3DSA:3.40.50.150 168 318 4.9E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS04325 4b7ba72714dfadf461f53f10a612a4d0 373 PANTHER PTHR18895 200 337 4.4E-22 T 23-04-2016 NIDE_RS03475 babb3b8e0427ea4259c2245dd79e8812 358 PANTHER PTHR22926 2 358 1.4E-164 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS03475 babb3b8e0427ea4259c2245dd79e8812 358 ProSitePatterns PS01348 MraY family signature 2. 187 198 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS03475 babb3b8e0427ea4259c2245dd79e8812 358 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 39 358 2.7E-133 T 23-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS03475 babb3b8e0427ea4259c2245dd79e8812 358 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 356 25.197 T 23-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS03475 babb3b8e0427ea4259c2245dd79e8812 358 PANTHER PTHR22926:SF5 2 358 1.4E-164 T 23-04-2016 NIDE_RS03475 babb3b8e0427ea4259c2245dd79e8812 358 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 8.8E-6 T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS03475 babb3b8e0427ea4259c2245dd79e8812 358 Pfam PF00953 Glycosyl transferase family 4 99 282 8.8E-39 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS03475 babb3b8e0427ea4259c2245dd79e8812 358 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS14860 618087bdcce43662b4c5bde6a45ecd26 104 PANTHER PTHR30561 1 104 3.0E-47 T 23-04-2016 NIDE_RS14860 618087bdcce43662b4c5bde6a45ecd26 104 Pfam PF00893 Small Multidrug Resistance protein 1 92 1.1E-29 T 23-04-2016 IPR000390 Small multidrug resistance protein family GO:0016021 NIDE_RS14860 618087bdcce43662b4c5bde6a45ecd26 104 PANTHER PTHR30561:SF0 1 104 3.0E-47 T 23-04-2016 NIDE_RS14860 618087bdcce43662b4c5bde6a45ecd26 104 SUPERFAMILY SSF103481 6 101 5.49E-19 T 23-04-2016 NIDE_RS01750 d6c439f2bba145b3c4cbb8549bed4b97 59 Gene3D G3DSA:2.20.28.40 1 43 5.4E-4 T 23-04-2016 NIDE_RS15795 e36a1fe9e20eab160ad8b6b30418f84b 285 Pfam PF03781 Sulfatase-modifying factor enzyme 1 47 280 8.0E-54 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS15795 e36a1fe9e20eab160ad8b6b30418f84b 285 Gene3D G3DSA:3.90.1580.10 38 284 3.3E-69 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS15795 e36a1fe9e20eab160ad8b6b30418f84b 285 SUPERFAMILY SSF56436 46 283 1.81E-68 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS15795 e36a1fe9e20eab160ad8b6b30418f84b 285 PANTHER PTHR23150 48 283 3.5E-58 T 23-04-2016 NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PANTHER PTHR24321 2 250 1.3E-56 T 23-04-2016 NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 SUPERFAMILY SSF51735 5 250 1.88E-87 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PANTHER PTHR24321:SF6 2 250 1.3E-56 T 23-04-2016 NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 Gene3D G3DSA:3.40.50.720 1 250 2.1E-91 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.4E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.4E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.4E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.4E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.4E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.4E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 249 1.2E-69 T 23-04-2016 NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.6E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.6E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.6E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS02065 b9c1c5adb3ce462a7c2f83f69cab8acd 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 192 0.0025 T 23-04-2016 NIDE_RS13940 f59cbea74b28ca2d6b897d6b6732daa8 174 SMART SM00935 2 170 1.6E-35 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 NIDE_RS13940 f59cbea74b28ca2d6b897d6b6732daa8 174 Pfam PF03938 Outer membrane protein (OmpH-like) 8 168 1.1E-28 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 NIDE_RS13940 f59cbea74b28ca2d6b897d6b6732daa8 174 PANTHER PTHR35089:SF1 6 171 3.5E-25 T 23-04-2016 NIDE_RS13940 f59cbea74b28ca2d6b897d6b6732daa8 174 SUPERFAMILY SSF111384 25 170 6.67E-25 T 23-04-2016 IPR024930 Skp domain NIDE_RS13940 f59cbea74b28ca2d6b897d6b6732daa8 174 PANTHER PTHR35089 6 171 3.5E-25 T 23-04-2016 NIDE_RS13940 f59cbea74b28ca2d6b897d6b6732daa8 174 Gene3D G3DSA:3.30.910.20 24 61 2.4E-14 T 23-04-2016 NIDE_RS13940 f59cbea74b28ca2d6b897d6b6732daa8 174 Gene3D G3DSA:3.30.910.20 99 169 2.4E-14 T 23-04-2016 NIDE_RS11560 87e206a2e0daa037e60f6d372151498a 237 Gene3D G3DSA:3.30.450.20 52 159 4.5E-4 T 23-04-2016 NIDE_RS11560 87e206a2e0daa037e60f6d372151498a 237 SUPERFAMILY SSF103190 54 160 8.24E-8 T 23-04-2016 IPR029151 Periplasmic sensor domain-like NIDE_RS00870 5721a5a9a424d774c9414c2771ee5285 320 PANTHER PTHR23150 34 294 2.6E-63 T 23-04-2016 NIDE_RS00870 5721a5a9a424d774c9414c2771ee5285 320 Gene3D G3DSA:1.25.40.10 285 320 1.2E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS00870 5721a5a9a424d774c9414c2771ee5285 320 SUPERFAMILY SSF56436 33 259 1.15E-66 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS00870 5721a5a9a424d774c9414c2771ee5285 320 Pfam PF03781 Sulfatase-modifying factor enzyme 1 33 258 2.3E-53 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS00870 5721a5a9a424d774c9414c2771ee5285 320 Gene3D G3DSA:3.90.1580.10 26 261 2.7E-67 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS06565 13eb71ad4d7b1cbea7679300a8ed88cd 183 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 77 149 2.7E-15 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 NIDE_RS06565 13eb71ad4d7b1cbea7679300a8ed88cd 183 SUPERFAMILY SSF54211 8 179 2.01E-20 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS06565 13eb71ad4d7b1cbea7679300a8ed88cd 183 Gene3D G3DSA:3.30.230.10 75 178 1.8E-24 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS06565 13eb71ad4d7b1cbea7679300a8ed88cd 183 PANTHER PTHR10046 81 183 1.5E-19 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 NIDE_RS06565 13eb71ad4d7b1cbea7679300a8ed88cd 183 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 108 127 3.1E-14 T 23-04-2016 NIDE_RS06565 13eb71ad4d7b1cbea7679300a8ed88cd 183 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 131 149 3.1E-14 T 23-04-2016 NIDE_RS06565 13eb71ad4d7b1cbea7679300a8ed88cd 183 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 78 97 3.1E-14 T 23-04-2016 NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 PRINTS PR00340 P-II protein signature 23 41 1.3E-41 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 PRINTS PR00340 P-II protein signature 2 17 1.3E-41 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 PRINTS PR00340 P-II protein signature 83 103 1.3E-41 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 PRINTS PR00340 P-II protein signature 52 75 1.3E-41 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 PANTHER PTHR30115 1 112 1.0E-61 T 23-04-2016 NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 PIRSF PIRSF039144 1 112 2.1E-53 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 SMART SM00938 4 105 2.3E-61 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 23-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 Gene3D G3DSA:3.30.70.120 1 112 1.0E-49 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 SUPERFAMILY SSF54913 1 112 2.1E-44 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta NIDE_RS06305 ada26f9cd4c51cacffbbfbea1268972e 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.0E-42 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 NIDE_RS02455 51c328e4674e62f6a595131bca8367c7 250 Gene3D G3DSA:3.40.50.7700 118 246 9.3E-22 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 NIDE_RS02455 51c328e4674e62f6a595131bca8367c7 250 PANTHER PTHR23046:SF3 2 247 3.2E-109 T 23-04-2016 NIDE_RS02455 51c328e4674e62f6a595131bca8367c7 250 SMART SM01001 118 250 1.9E-28 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 NIDE_RS02455 51c328e4674e62f6a595131bca8367c7 250 PANTHER PTHR23046 2 247 3.2E-109 T 23-04-2016 NIDE_RS02455 51c328e4674e62f6a595131bca8367c7 250 Pfam PF00731 AIR carboxylase 120 245 1.3E-12 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 NIDE_RS02455 51c328e4674e62f6a595131bca8367c7 250 SUPERFAMILY SSF52255 119 245 1.7E-26 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 NIDE_RS20645 6db88cb00923135aab76ab100af79713 380 PANTHER PTHR12526 179 350 1.8E-37 T 23-04-2016 NIDE_RS20645 6db88cb00923135aab76ab100af79713 380 Gene3D G3DSA:3.40.50.2000 176 332 2.1E-27 T 23-04-2016 NIDE_RS20645 6db88cb00923135aab76ab100af79713 380 SUPERFAMILY SSF53756 30 350 2.67E-55 T 23-04-2016 NIDE_RS20645 6db88cb00923135aab76ab100af79713 380 Pfam PF00534 Glycosyl transferases group 1 174 332 3.3E-35 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS13140 4e27a11cd2d19089a3c501ac9e7cabe1 336 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 325 1.0E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13140 4e27a11cd2d19089a3c501ac9e7cabe1 336 SUPERFAMILY SSF51735 1 333 8.99E-86 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13140 4e27a11cd2d19089a3c501ac9e7cabe1 336 Gene3D G3DSA:3.90.25.10 171 218 1.6E-58 T 23-04-2016 NIDE_RS13140 4e27a11cd2d19089a3c501ac9e7cabe1 336 Gene3D G3DSA:3.90.25.10 268 335 1.6E-58 T 23-04-2016 NIDE_RS13140 4e27a11cd2d19089a3c501ac9e7cabe1 336 PANTHER PTHR10366 253 334 4.7E-129 T 23-04-2016 NIDE_RS13140 4e27a11cd2d19089a3c501ac9e7cabe1 336 PANTHER PTHR10366 2 228 4.7E-129 T 23-04-2016 NIDE_RS13140 4e27a11cd2d19089a3c501ac9e7cabe1 336 PANTHER PTHR10366:SF399 253 334 4.7E-129 T 23-04-2016 NIDE_RS13140 4e27a11cd2d19089a3c501ac9e7cabe1 336 PANTHER PTHR10366:SF399 2 228 4.7E-129 T 23-04-2016 NIDE_RS13140 4e27a11cd2d19089a3c501ac9e7cabe1 336 Gene3D G3DSA:3.40.50.720 1 170 1.2E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS08055 d5768376a87adf41fca2972583a1318f 233 SUPERFAMILY SSF56219 1 230 2.62E-25 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase NIDE_RS08055 d5768376a87adf41fca2972583a1318f 233 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 223 1.1E-12 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase NIDE_RS08055 d5768376a87adf41fca2972583a1318f 233 Gene3D G3DSA:3.60.10.10 1 231 8.3E-41 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase NIDE_RS04755 aee52bfccb0d1a83d765e230fabe5a5a 144 SUPERFAMILY SSF74653 39 142 3.79E-19 T 23-04-2016 NIDE_RS04755 aee52bfccb0d1a83d765e230fabe5a5a 144 Gene3D G3DSA:3.30.1150.10 30 141 2.3E-19 T 23-04-2016 NIDE_RS04755 aee52bfccb0d1a83d765e230fabe5a5a 144 PANTHER PTHR33446 19 144 2.0E-16 T 23-04-2016 NIDE_RS04755 aee52bfccb0d1a83d765e230fabe5a5a 144 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 66 141 7.1E-17 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS04755 aee52bfccb0d1a83d765e230fabe5a5a 144 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 66 140 2.6E-17 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS04755 aee52bfccb0d1a83d765e230fabe5a5a 144 PANTHER PTHR33446:SF2 19 144 2.0E-16 T 23-04-2016 NIDE_RS17425 d86268ac2ce4c2183a974615862eaaf7 331 SUPERFAMILY SSF53448 10 294 1.88E-34 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS17425 d86268ac2ce4c2183a974615862eaaf7 331 Gene3D G3DSA:3.90.550.10 11 286 2.8E-46 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS17425 d86268ac2ce4c2183a974615862eaaf7 331 Pfam PF00483 Nucleotidyl transferase 12 291 8.8E-24 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 NIDE_RS12710 af4b29dd81e8e45ced536487e2379778 108 SUPERFAMILY SSF50022 6 104 4.84E-29 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS12710 af4b29dd81e8e45ced536487e2379778 108 Pfam PF00355 Rieske [2Fe-2S] domain 8 86 4.2E-16 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS12710 af4b29dd81e8e45ced536487e2379778 108 PANTHER PTHR21496 6 94 2.6E-23 T 23-04-2016 NIDE_RS12710 af4b29dd81e8e45ced536487e2379778 108 Gene3D G3DSA:2.102.10.10 6 104 5.5E-30 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS17975 b79f1077a65154fc5c284da2544fadfd 410 Pfam PF00999 Sodium/hydrogen exchanger family 9 404 4.7E-58 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 NIDE_RS17975 b79f1077a65154fc5c284da2544fadfd 410 PANTHER PTHR10110 4 405 1.9E-93 T 23-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 NIDE_RS17975 b79f1077a65154fc5c284da2544fadfd 410 PANTHER PTHR10110:SF86 4 405 1.9E-93 T 23-04-2016 NIDE_RS15870 a4c14d40dfb4925f6522218f4e05b46d 398 PANTHER PTHR33840 35 388 4.3E-62 T 23-04-2016 NIDE_RS15870 a4c14d40dfb4925f6522218f4e05b46d 398 PANTHER PTHR33840 2 14 4.3E-62 T 23-04-2016 NIDE_RS15870 a4c14d40dfb4925f6522218f4e05b46d 398 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 3 313 1.7E-55 T 23-04-2016 IPR018712 Domain of unknown function DUF2235 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 SUPERFAMILY SSF53223 7 184 3.84E-72 T 23-04-2016 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 101 114 - T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 SUPERFAMILY SSF51735 182 417 4.51E-71 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 SMART SM00839 184 415 2.2E-91 T 23-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 PANTHER PTHR11606 25 416 1.3E-178 T 23-04-2016 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 Gene3D G3DSA:3.40.50.720 182 417 2.8E-78 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 PIRSF PIRSF000185 4 418 2.1E-165 T 23-04-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 182 415 9.2E-74 T 23-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 93 107 1.6E-34 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 215 235 1.6E-34 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 173 195 1.6E-34 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 343 354 1.6E-34 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 Gene3D G3DSA:3.40.192.10 40 180 2.4E-62 T 23-04-2016 NIDE_RS02040 78136c04026d74bbd6bd404c7b8ce465 418 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 36 163 1.2E-59 T 23-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 NIDE_RS05335 7f6911369c4587aa568712b11b055911 426 PANTHER PTHR23508:SF18 1 424 9.2E-72 T 23-04-2016 NIDE_RS05335 7f6911369c4587aa568712b11b055911 426 Pfam PF07690 Major Facilitator Superfamily 19 375 3.6E-35 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS05335 7f6911369c4587aa568712b11b055911 426 Gene3D G3DSA:1.20.1250.20 231 420 2.0E-19 T 23-04-2016 NIDE_RS05335 7f6911369c4587aa568712b11b055911 426 Gene3D G3DSA:1.20.1250.20 15 211 3.7E-32 T 23-04-2016 NIDE_RS05335 7f6911369c4587aa568712b11b055911 426 PANTHER PTHR23508 1 424 9.2E-72 T 23-04-2016 NIDE_RS05335 7f6911369c4587aa568712b11b055911 426 SUPERFAMILY SSF103473 5 425 8.11E-71 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS10535 bfe912e74f5edae6a8881f8d37407403 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 1.7E-28 T 23-04-2016 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 NIDE_RS10535 bfe912e74f5edae6a8881f8d37407403 89 PIRSF PIRSF004669 1 89 9.5E-29 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NIDE_RS10535 bfe912e74f5edae6a8881f8d37407403 89 PANTHER PTHR34040 1 89 5.1E-30 T 23-04-2016 NIDE_RS10535 bfe912e74f5edae6a8881f8d37407403 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 4.4E-28 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NIDE_RS10535 bfe912e74f5edae6a8881f8d37407403 89 PANTHER PTHR34040:SF2 1 89 5.1E-30 T 23-04-2016 NIDE_RS10535 bfe912e74f5edae6a8881f8d37407403 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.8E-19 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NIDE_RS10535 bfe912e74f5edae6a8881f8d37407403 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.8E-19 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NIDE_RS10535 bfe912e74f5edae6a8881f8d37407403 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.8E-19 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 NIDE_RS12205 658f547b1132706978854c72f27babee 369 PANTHER PTHR11751:SF3 8 360 2.8E-68 T 23-04-2016 NIDE_RS12205 658f547b1132706978854c72f27babee 369 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 6 360 1.7E-90 T 23-04-2016 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443|UniPathway: UPA00148 NIDE_RS12205 658f547b1132706978854c72f27babee 369 SUPERFAMILY SSF53383 5 361 3.34E-75 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS12205 658f547b1132706978854c72f27babee 369 Gene3D G3DSA:3.90.1150.10 262 363 1.6E-28 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS12205 658f547b1132706978854c72f27babee 369 PANTHER PTHR11751 8 360 2.8E-68 T 23-04-2016 NIDE_RS12205 658f547b1132706978854c72f27babee 369 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 219 232 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 NIDE_RS12205 658f547b1132706978854c72f27babee 369 Gene3D G3DSA:3.40.640.10 36 261 1.7E-58 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS12205 658f547b1132706978854c72f27babee 369 Pfam PF00155 Aminotransferase class I and II 24 360 5.2E-38 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 PANTHER PTHR19959 202 530 2.5E-116 T 23-04-2016 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 PANTHER PTHR19959 70 85 2.5E-116 T 23-04-2016 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 SMART SM00028 288 321 2.7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 SMART SM00028 165 198 82.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 SMART SM00028 246 279 0.013 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 SMART SM00028 204 237 44.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 SMART SM00028 330 363 1.7E-6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 SMART SM00028 372 405 0.0032 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 SMART SM00028 116 149 490.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 SMART SM00028 414 447 0.023 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 SMART SM00028 456 489 0.0046 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 PRINTS PR00381 Kinesin light chain signature 326 343 7.6E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 PRINTS PR00381 Kinesin light chain signature 405 426 7.6E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 PRINTS PR00381 Kinesin light chain signature 370 390 7.6E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 PRINTS PR00381 Kinesin light chain signature 239 258 7.6E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 Gene3D G3DSA:1.25.40.10 121 219 3.9E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 Pfam PF13374 Tetratricopeptide repeat 211 243 0.0076 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 Gene3D G3DSA:1.25.40.10 220 520 5.9E-56 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 SUPERFAMILY SSF48452 171 486 5.88E-30 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 Pfam PF13424 Tetratricopeptide repeat 329 404 2.3E-23 T 23-04-2016 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 Pfam PF13424 Tetratricopeptide repeat 244 317 4.9E-17 T 23-04-2016 NIDE_RS20455 b0779aeee62d6f5ee9ab33ad7cb56895 531 Pfam PF13424 Tetratricopeptide repeat 412 488 9.0E-21 T 23-04-2016 NIDE_RS13595 8a9687110b541a0dccb3604c8007f0b9 442 PANTHER PTHR30404:SF0 67 442 1.3E-67 T 23-04-2016 NIDE_RS13595 8a9687110b541a0dccb3604c8007f0b9 442 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 222 433 9.2E-49 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 NIDE_RS13595 8a9687110b541a0dccb3604c8007f0b9 442 SMART SM00646 282 433 1.1E-29 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 NIDE_RS13595 8a9687110b541a0dccb3604c8007f0b9 442 Pfam PF11741 AMIN domain 135 169 9.1E-5 T 23-04-2016 IPR021731 AMIN domain NIDE_RS13595 8a9687110b541a0dccb3604c8007f0b9 442 Pfam PF11741 AMIN domain 73 147 2.5E-6 T 23-04-2016 IPR021731 AMIN domain NIDE_RS13595 8a9687110b541a0dccb3604c8007f0b9 442 PANTHER PTHR30404 67 442 1.3E-67 T 23-04-2016 NIDE_RS13595 8a9687110b541a0dccb3604c8007f0b9 442 Gene3D G3DSA:3.40.630.40 221 317 9.0E-55 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 NIDE_RS13595 8a9687110b541a0dccb3604c8007f0b9 442 Gene3D G3DSA:3.40.630.40 357 437 9.0E-55 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 NIDE_RS13595 8a9687110b541a0dccb3604c8007f0b9 442 SUPERFAMILY SSF53187 360 436 4.39E-49 T 23-04-2016 NIDE_RS13595 8a9687110b541a0dccb3604c8007f0b9 442 SUPERFAMILY SSF53187 221 316 4.39E-49 T 23-04-2016 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 SUPERFAMILY SSF48452 33 144 8.65E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 Gene3D G3DSA:1.25.40.10 42 213 8.1E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 Pfam PF13424 Tetratricopeptide repeat 195 270 6.1E-20 T 23-04-2016 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 Pfam PF13424 Tetratricopeptide repeat 326 395 5.8E-9 T 23-04-2016 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 Pfam PF13424 Tetratricopeptide repeat 111 186 4.3E-19 T 23-04-2016 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 PANTHER PTHR19959 68 396 1.4E-97 T 23-04-2016 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 Gene3D G3DSA:1.25.40.10 214 393 6.9E-30 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 SUPERFAMILY SSF48452 274 392 1.06E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 Pfam PF13374 Tetratricopeptide repeat 69 109 3.3E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 Pfam PF13374 Tetratricopeptide repeat 279 312 3.6E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 PRINTS PR00381 Kinesin light chain signature 169 187 4.0E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 PRINTS PR00381 Kinesin light chain signature 234 251 4.0E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 PRINTS PR00381 Kinesin light chain signature 278 298 4.0E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 PRINTS PR00381 Kinesin light chain signature 313 334 4.0E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 PRINTS PR00381 Kinesin light chain signature 147 166 4.0E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 SMART SM00028 70 103 0.029 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 SMART SM00028 322 355 6.4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 SMART SM00028 154 187 0.027 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 SMART SM00028 238 271 0.75 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 SMART SM00028 280 313 4.3E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 SMART SM00028 112 145 2.1 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 SMART SM00028 196 229 0.16 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS15610 2ee589315975282dd8f06388d58679fb 420 SUPERFAMILY SSF48452 148 269 2.87E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS05400 6f1dc866fb82c289f69c9f45abd53139 131 Pfam PF11220 Protein of unknown function (DUF3015) 30 130 1.4E-12 T 23-04-2016 IPR021383 Protein of unknown function DUF3015 NIDE_RS20540 1ebf08bfabf49b72c2b488f47bd1a1cc 872 Gene3D G3DSA:1.10.510.10 76 280 7.8E-56 T 23-04-2016 NIDE_RS20540 1ebf08bfabf49b72c2b488f47bd1a1cc 872 Pfam PF00069 Protein kinase domain 10 262 2.0E-56 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 NIDE_RS20540 1ebf08bfabf49b72c2b488f47bd1a1cc 872 SUPERFAMILY SSF56112 7 337 4.45E-81 T 23-04-2016 IPR011009 Protein kinase-like domain NIDE_RS20540 1ebf08bfabf49b72c2b488f47bd1a1cc 872 Gene3D G3DSA:3.30.200.20 3 75 1.7E-23 T 23-04-2016 NIDE_RS20540 1ebf08bfabf49b72c2b488f47bd1a1cc 872 SMART SM00220 10 273 1.9E-73 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 NIDE_RS20540 1ebf08bfabf49b72c2b488f47bd1a1cc 872 PANTHER PTHR24362 864 872 2.7E-88 T 23-04-2016 NIDE_RS20540 1ebf08bfabf49b72c2b488f47bd1a1cc 872 PANTHER PTHR24362 1 361 2.7E-88 T 23-04-2016 NIDE_RS20540 1ebf08bfabf49b72c2b488f47bd1a1cc 872 PANTHER PTHR24362:SF160 864 872 2.7E-88 T 23-04-2016 NIDE_RS20540 1ebf08bfabf49b72c2b488f47bd1a1cc 872 PANTHER PTHR24362:SF160 1 361 2.7E-88 T 23-04-2016 NIDE_RS20540 1ebf08bfabf49b72c2b488f47bd1a1cc 872 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 23-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 NIDE_RS01550 c9ca0bcff71c168a53620da8a05aa20d 349 PANTHER PTHR30349:SF20 49 342 1.5E-55 T 23-04-2016 NIDE_RS01550 c9ca0bcff71c168a53620da8a05aa20d 349 Pfam PF00589 Phage integrase family 156 313 3.6E-36 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS01550 c9ca0bcff71c168a53620da8a05aa20d 349 Gene3D G3DSA:1.10.150.130 51 144 8.0E-11 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal NIDE_RS01550 c9ca0bcff71c168a53620da8a05aa20d 349 SUPERFAMILY SSF56349 51 319 7.65E-69 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS01550 c9ca0bcff71c168a53620da8a05aa20d 349 PANTHER PTHR30349 49 342 1.5E-55 T 23-04-2016 NIDE_RS01550 c9ca0bcff71c168a53620da8a05aa20d 349 Gene3D G3DSA:1.10.443.10 155 319 3.7E-47 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS02375 856eeba2d5a271f4a192314de0987128 343 Pfam PF15902 Sortilin, neurotensin receptor 3, 47 153 2.1E-9 T 23-04-2016 IPR031778 Sortilin, N-terminal NIDE_RS02375 856eeba2d5a271f4a192314de0987128 343 SUPERFAMILY SSF110296 207 334 2.88E-33 T 23-04-2016 NIDE_RS02375 856eeba2d5a271f4a192314de0987128 343 Gene3D G3DSA:2.130.10.10 25 332 9.9E-79 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS02375 856eeba2d5a271f4a192314de0987128 343 SUPERFAMILY SSF110296 26 197 2.04E-37 T 23-04-2016 NIDE_RS20175 67b7ca17b48ce837bc74311d3222291b 236 SUPERFAMILY SSF103088 128 229 8.89E-26 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20175 67b7ca17b48ce837bc74311d3222291b 236 Pfam PF00691 OmpA family 148 228 1.2E-14 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20175 67b7ca17b48ce837bc74311d3222291b 236 Gene3D G3DSA:3.30.1330.60 129 232 6.6E-26 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20175 67b7ca17b48ce837bc74311d3222291b 236 PANTHER PTHR30128:SF18 101 229 2.5E-36 T 23-04-2016 NIDE_RS20175 67b7ca17b48ce837bc74311d3222291b 236 PANTHER PTHR30128 101 229 2.5E-36 T 23-04-2016 NIDE_RS20175 67b7ca17b48ce837bc74311d3222291b 236 PRINTS PR01021 OMPA domain signature 164 179 2.7E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS20175 67b7ca17b48ce837bc74311d3222291b 236 PRINTS PR01021 OMPA domain signature 179 195 2.7E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS21170 4a01a0fadb0838774a585f8763ba81f8 209 PANTHER PTHR12302:SF0 126 207 7.4E-18 T 23-04-2016 NIDE_RS21170 4a01a0fadb0838774a585f8763ba81f8 209 PANTHER PTHR12302 126 207 7.4E-18 T 23-04-2016 NIDE_RS21170 4a01a0fadb0838774a585f8763ba81f8 209 Pfam PF00565 Staphylococcal nuclease homologue 140 206 1.7E-6 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold NIDE_RS21170 4a01a0fadb0838774a585f8763ba81f8 209 SUPERFAMILY SSF50199 127 207 9.42E-16 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold NIDE_RS21170 4a01a0fadb0838774a585f8763ba81f8 209 Gene3D G3DSA:2.40.50.90 126 206 2.1E-17 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold NIDE_RS12200 8177b4e3ab170ede4ee4f922f0eddfc5 240 Pfam PF01955 Adenosylcobinamide amidohydrolase 21 223 4.2E-55 T 23-04-2016 IPR002808 Adenosylcobinamide amidohydrolase, CbiZ NIDE_RS12200 8177b4e3ab170ede4ee4f922f0eddfc5 240 PANTHER PTHR35336 9 228 1.1E-28 T 23-04-2016 NIDE_RS12200 8177b4e3ab170ede4ee4f922f0eddfc5 240 PANTHER PTHR35336:SF2 9 228 1.1E-28 T 23-04-2016 NIDE_RS00165 5d18cfa0b62d98643a0276d43e36254c 384 PANTHER PTHR30294 12 384 4.0E-63 T 23-04-2016 NIDE_RS00165 5d18cfa0b62d98643a0276d43e36254c 384 Pfam PF12698 ABC-2 family transporter protein 30 374 5.4E-29 T 23-04-2016 NIDE_RS00165 5d18cfa0b62d98643a0276d43e36254c 384 PANTHER PTHR30294:SF12 12 384 4.0E-63 T 23-04-2016 NIDE_RS19565 1b32c30644a3e25ed954cd1c265608d2 427 SUPERFAMILY SSF53383 1 426 8.58E-128 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS19565 1b32c30644a3e25ed954cd1c265608d2 427 Pfam PF00202 Aminotransferase class-III 35 400 7.8E-72 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS19565 1b32c30644a3e25ed954cd1c265608d2 427 PANTHER PTHR11986 1 427 8.1E-218 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 NIDE_RS19565 1b32c30644a3e25ed954cd1c265608d2 427 Gene3D G3DSA:3.90.1150.10 321 426 1.7E-41 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS19565 1b32c30644a3e25ed954cd1c265608d2 427 Gene3D G3DSA:3.90.1150.10 2 71 1.7E-41 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS19565 1b32c30644a3e25ed954cd1c265608d2 427 PANTHER PTHR11986:SF5 1 427 8.1E-218 T 23-04-2016 NIDE_RS19565 1b32c30644a3e25ed954cd1c265608d2 427 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 427 100.737 T 23-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 NIDE_RS19565 1b32c30644a3e25ed954cd1c265608d2 427 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 426 1.7E-188 T 23-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 NIDE_RS19565 1b32c30644a3e25ed954cd1c265608d2 427 Gene3D G3DSA:3.40.640.10 73 318 6.3E-81 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS02785 77acf61e7ea8b60b80fd3a520b5bb0aa 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 419 438 2.9E-6 T 23-04-2016 NIDE_RS02785 77acf61e7ea8b60b80fd3a520b5bb0aa 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 215 236 2.9E-6 T 23-04-2016 NIDE_RS02785 77acf61e7ea8b60b80fd3a520b5bb0aa 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 72 97 2.9E-6 T 23-04-2016 NIDE_RS02785 77acf61e7ea8b60b80fd3a520b5bb0aa 491 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 478 1.5E-138 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 NIDE_RS02785 77acf61e7ea8b60b80fd3a520b5bb0aa 491 PANTHER PTHR22773:SF41 1 491 2.7E-175 T 23-04-2016 NIDE_RS02785 77acf61e7ea8b60b80fd3a520b5bb0aa 491 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 480 18.673 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 NIDE_RS02785 77acf61e7ea8b60b80fd3a520b5bb0aa 491 Pfam PF00361 Proton-conducting membrane transporter 126 425 7.0E-78 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS02785 77acf61e7ea8b60b80fd3a520b5bb0aa 491 PANTHER PTHR22773 1 491 2.7E-175 T 23-04-2016 NIDE_RS04640 2a4cacae9dd99f3a8bfeed6562935717 84 PANTHER PTHR36443:SF1 1 83 2.5E-17 T 23-04-2016 NIDE_RS04640 2a4cacae9dd99f3a8bfeed6562935717 84 PANTHER PTHR36443 1 83 2.5E-17 T 23-04-2016 NIDE_RS04640 2a4cacae9dd99f3a8bfeed6562935717 84 Pfam PF11146 Protein of unknown function (DUF2905) 8 77 5.2E-22 T 23-04-2016 IPR021320 Protein of unknown function DUF2905 NIDE_RS00775 e831855f0abe7da36e6ed4562b37c1f0 425 PANTHER PTHR11680 9 422 1.7E-242 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 NIDE_RS00775 e831855f0abe7da36e6ed4562b37c1f0 425 Gene3D G3DSA:3.90.1150.10 287 418 3.4E-53 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS00775 e831855f0abe7da36e6ed4562b37c1f0 425 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 225 241 - T 23-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 NIDE_RS00775 e831855f0abe7da36e6ed4562b37c1f0 425 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 10 418 52.634 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 NIDE_RS00775 e831855f0abe7da36e6ed4562b37c1f0 425 PIRSF PIRSF000412 2 422 3.6E-167 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 NIDE_RS00775 e831855f0abe7da36e6ed4562b37c1f0 425 Pfam PF00464 Serine hydroxymethyltransferase 11 387 2.3E-167 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 NIDE_RS00775 e831855f0abe7da36e6ed4562b37c1f0 425 SUPERFAMILY SSF53383 9 418 4.87E-173 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS00775 e831855f0abe7da36e6ed4562b37c1f0 425 Gene3D G3DSA:3.40.640.10 40 286 6.7E-102 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS10570 b77b9118c920470e26d71b1122bee768 291 SUPERFAMILY SSF55073 120 269 6.04E-25 T 23-04-2016 IPR029787 Nucleotide cyclase NIDE_RS10570 b77b9118c920470e26d71b1122bee768 291 Pfam PF00990 Diguanylate cyclase, GGDEF domain 115 268 3.0E-22 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS10570 b77b9118c920470e26d71b1122bee768 291 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 114 269 8.6E-16 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS10570 b77b9118c920470e26d71b1122bee768 291 Gene3D G3DSA:3.30.70.270 116 269 1.1E-28 T 23-04-2016 NIDE_RS10570 b77b9118c920470e26d71b1122bee768 291 SMART SM00267 103 272 2.2E-13 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS06775 2a6dd6b964b2f369741879eb3241a4d0 297 Gene3D G3DSA:3.40.50.970 31 271 1.3E-44 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS06775 2a6dd6b964b2f369741879eb3241a4d0 297 PANTHER PTHR32154 1 273 7.3E-90 T 23-04-2016 NIDE_RS06775 2a6dd6b964b2f369741879eb3241a4d0 297 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 92 234 5.1E-22 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NIDE_RS06775 2a6dd6b964b2f369741879eb3241a4d0 297 SUPERFAMILY SSF52518 41 271 3.42E-47 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS06775 2a6dd6b964b2f369741879eb3241a4d0 297 PANTHER PTHR32154:SF4 1 273 7.3E-90 T 23-04-2016 NIDE_RS05915 a287448196fb46c503c7705936c88ee0 256 Pfam PF12679 ABC-2 family transporter protein 6 246 3.0E-14 T 23-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 NIDE_RS05915 a287448196fb46c503c7705936c88ee0 256 PANTHER PTHR30294:SF5 1 243 1.3E-39 T 23-04-2016 NIDE_RS05915 a287448196fb46c503c7705936c88ee0 256 PANTHER PTHR30294 1 243 1.3E-39 T 23-04-2016 NIDE_RS09670 771cbdb771c2489dea51501ba2ac7c32 485 PANTHER PTHR30332 130 459 8.2E-82 T 23-04-2016 NIDE_RS09670 771cbdb771c2489dea51501ba2ac7c32 485 PANTHER PTHR30332:SF1 130 459 8.2E-82 T 23-04-2016 NIDE_RS09670 771cbdb771c2489dea51501ba2ac7c32 485 PRINTS PR00811 Bacterial general secretion pathway protein D signature 389 407 8.6E-15 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS09670 771cbdb771c2489dea51501ba2ac7c32 485 PRINTS PR00811 Bacterial general secretion pathway protein D signature 412 426 8.6E-15 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS09670 771cbdb771c2489dea51501ba2ac7c32 485 PRINTS PR00811 Bacterial general secretion pathway protein D signature 180 190 8.6E-15 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS09670 771cbdb771c2489dea51501ba2ac7c32 485 PRINTS PR00811 Bacterial general secretion pathway protein D signature 260 284 8.6E-15 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS09670 771cbdb771c2489dea51501ba2ac7c32 485 Pfam PF00263 Bacterial type II and III secretion system protein 264 424 1.1E-44 T 23-04-2016 IPR004846 Type II/III secretion system GO:0009306 NIDE_RS09670 771cbdb771c2489dea51501ba2ac7c32 485 Pfam PF13629 Pilus formation protein N terminal region 43 113 6.0E-21 T 23-04-2016 IPR032789 Pilus formation protein, N-terminal NIDE_RS05460 5b3e8f5e75a8b91de4ff86f20126e6bb 165 Gene3D G3DSA:1.10.1740.10 6 96 9.9E-9 T 23-04-2016 NIDE_RS05460 5b3e8f5e75a8b91de4ff86f20126e6bb 165 Gene3D G3DSA:1.10.10.10 97 161 5.2E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS05460 5b3e8f5e75a8b91de4ff86f20126e6bb 165 SUPERFAMILY SSF88659 98 160 1.23E-5 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05460 5b3e8f5e75a8b91de4ff86f20126e6bb 165 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 158 6.6E-13 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05460 5b3e8f5e75a8b91de4ff86f20126e6bb 165 SUPERFAMILY SSF88946 4 87 5.89E-9 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS05460 5b3e8f5e75a8b91de4ff86f20126e6bb 165 PANTHER PTHR30173 4 160 1.6E-14 T 23-04-2016 NIDE_RS04115 7361e9ee92d0b900d12dfde3b0b3c899 218 SUPERFAMILY SSF49464 81 125 6.67E-6 T 23-04-2016 IPR008969 Carboxypeptidase-like, regulatory domain NIDE_RS04115 7361e9ee92d0b900d12dfde3b0b3c899 218 Gene3D G3DSA:2.60.40.1120 82 125 5.6E-6 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain NIDE_RS08525 598127011ac27f67c76f27169d1ee6cc 250 Gene3D G3DSA:1.20.910.10 6 244 1.7E-25 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 NIDE_RS08525 598127011ac27f67c76f27169d1ee6cc 250 SUPERFAMILY SSF48613 10 240 6.67E-26 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 NIDE_RS08525 598127011ac27f67c76f27169d1ee6cc 250 Pfam PF14518 Iron-containing redox enzyme 43 235 1.4E-37 T 23-04-2016 IPR028201 PqqC-like protein NIDE_RS08525 598127011ac27f67c76f27169d1ee6cc 250 SMART SM01236 75 178 0.0013 T 23-04-2016 NIDE_RS06190 403a85de23b6e5bfff962eddfeab5920 127 ProSitePatterns PS00054 Ribosomal protein S11 signature. 95 117 - T 23-04-2016 IPR018102 Ribosomal S11, conserved site NIDE_RS06190 403a85de23b6e5bfff962eddfeab5920 127 Gene3D G3DSA:3.30.420.80 5 127 1.1E-54 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06190 403a85de23b6e5bfff962eddfeab5920 127 Pfam PF00411 Ribosomal protein S11 17 126 8.3E-51 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06190 403a85de23b6e5bfff962eddfeab5920 127 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 4 127 33.595 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06190 403a85de23b6e5bfff962eddfeab5920 127 PANTHER PTHR11759 6 127 3.8E-68 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06190 403a85de23b6e5bfff962eddfeab5920 127 SUPERFAMILY SSF53137 12 127 3.74E-49 T 23-04-2016 NIDE_RS06190 403a85de23b6e5bfff962eddfeab5920 127 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 8 124 3.4E-57 T 23-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06190 403a85de23b6e5bfff962eddfeab5920 127 PIRSF PIRSF002131 1 127 8.6E-54 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 SMART SM00028 168 201 0.018 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 SMART SM00028 88 121 2.2 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 SMART SM00028 8 41 0.06 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 SMART SM00028 208 241 0.038 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 SMART SM00028 48 81 3.5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 SMART SM00028 128 161 0.047 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 SUPERFAMILY SSF48452 124 241 1.52E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 PANTHER PTHR10098 11 242 6.2E-32 T 23-04-2016 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 Gene3D G3DSA:1.25.40.10 11 241 5.1E-43 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 SUPERFAMILY SSF48452 7 163 1.65E-25 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 PANTHER PTHR10098:SF104 11 242 6.2E-32 T 23-04-2016 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 Pfam PF13424 Tetratricopeptide repeat 167 240 4.4E-11 T 23-04-2016 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 Pfam PF13424 Tetratricopeptide repeat 15 78 1.9E-9 T 23-04-2016 NIDE_RS06500 0cfd14278fb583390d2783eaea851ce2 274 Pfam PF13424 Tetratricopeptide repeat 89 155 4.9E-15 T 23-04-2016 NIDE_RS03365 ad7361143e9009ad61a03be991269131 239 PANTHER PTHR22572 2 119 2.2E-25 T 23-04-2016 NIDE_RS03365 ad7361143e9009ad61a03be991269131 239 Pfam PF12804 MobA-like NTP transferase domain 3 121 6.8E-16 T 23-04-2016 IPR025877 MobA-like NTP transferase NIDE_RS03365 ad7361143e9009ad61a03be991269131 239 SUPERFAMILY SSF53448 1 237 5.23E-37 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS03365 ad7361143e9009ad61a03be991269131 239 Gene3D G3DSA:3.90.550.10 1 235 4.1E-34 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20880 239ea9a2e74267bc0bfc5b427a79cdff 265 Gene3D G3DSA:2.60.40.1120 196 262 4.3E-4 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain NIDE_RS20405 d852e6526c42441fa86ebe69a9695309 291 Pfam PF04116 Fatty acid hydroxylase superfamily 118 251 5.3E-28 T 23-04-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 NIDE_RS20405 d852e6526c42441fa86ebe69a9695309 291 PANTHER PTHR21624 111 251 4.7E-13 T 23-04-2016 NIDE_RS20405 d852e6526c42441fa86ebe69a9695309 291 PANTHER PTHR21624:SF2 111 251 4.7E-13 T 23-04-2016 NIDE_RS05245 94e0a18c651c8afbc5ff4bb5de6f0957 272 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 58 231 2.1E-4 T 23-04-2016 IPR008775 Phytanoyl-CoA dioxygenase NIDE_RS05245 94e0a18c651c8afbc5ff4bb5de6f0957 272 SUPERFAMILY SSF51197 87 243 4.26E-18 T 23-04-2016 NIDE_RS05245 94e0a18c651c8afbc5ff4bb5de6f0957 272 Gene3D G3DSA:2.60.120.620 89 242 5.6E-13 T 23-04-2016 NIDE_RS08380 dac2ae45629e533a6d6a898ab0ea0595 245 PANTHER PTHR30373 29 161 6.8E-22 T 23-04-2016 NIDE_RS08380 dac2ae45629e533a6d6a898ab0ea0595 245 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 42 163 2.3E-24 T 23-04-2016 IPR007621 TPM domain NIDE_RS08380 dac2ae45629e533a6d6a898ab0ea0595 245 PANTHER PTHR30373:SF2 29 161 6.8E-22 T 23-04-2016 NIDE_RS16665 9b1ac43d76da56edf698dae228ca8d61 243 Gene3D G3DSA:1.10.10.10 151 229 1.4E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16665 9b1ac43d76da56edf698dae228ca8d61 243 Gene3D G3DSA:2.60.120.10 36 148 1.8E-23 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS16665 9b1ac43d76da56edf698dae228ca8d61 243 PANTHER PTHR24567 35 226 2.7E-35 T 23-04-2016 NIDE_RS16665 9b1ac43d76da56edf698dae228ca8d61 243 Pfam PF13545 Crp-like helix-turn-helix domain 153 225 8.1E-12 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NIDE_RS16665 9b1ac43d76da56edf698dae228ca8d61 243 SUPERFAMILY SSF46785 153 228 9.23E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16665 9b1ac43d76da56edf698dae228ca8d61 243 SMART SM00419 170 221 5.1E-4 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 NIDE_RS16665 9b1ac43d76da56edf698dae228ca8d61 243 SMART SM00100 13 133 1.6E-11 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain NIDE_RS16665 9b1ac43d76da56edf698dae228ca8d61 243 Pfam PF00027 Cyclic nucleotide-binding domain 35 120 1.8E-16 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain NIDE_RS16665 9b1ac43d76da56edf698dae228ca8d61 243 SUPERFAMILY SSF51206 35 148 2.49E-25 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573 385 602 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 Pfam PF02867 Ribonucleotide reductase, barrel domain 182 737 1.3E-106 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 Pfam PF02867 Ribonucleotide reductase, barrel domain 787 898 1.4E-17 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 SUPERFAMILY SSF51998 381 700 7.94E-127 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 SUPERFAMILY SSF51998 823 902 7.94E-127 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 SUPERFAMILY SSF51998 181 291 7.94E-127 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573 821 1095 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573 627 732 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573 87 144 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 SUPERFAMILY SSF75625 280 374 9.61E-8 T 23-04-2016 IPR029072 YebC-like NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573:SF18 1133 1180 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573:SF18 175 292 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 Pfam PF08471 Class II vitamin B12-dependent ribonucleotide reductase 31 131 2.2E-38 T 23-04-2016 IPR013678 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain GO:0004748|GO:0050897|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573 1133 1180 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573 175 292 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573:SF18 821 1095 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573:SF18 627 732 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573:SF18 87 144 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 108 738 4.9E-144 T 23-04-2016 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 Gene3D G3DSA:3.20.70.20 649 695 8.0E-94 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 Gene3D G3DSA:3.20.70.20 45 286 8.0E-94 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 Gene3D G3DSA:3.20.70.20 857 903 8.0E-94 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 Gene3D G3DSA:3.20.70.20 376 576 8.0E-94 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PANTHER PTHR11573:SF18 385 602 0.0 T 23-04-2016 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PRINTS PR01183 Ribonucleotide reductase large chain signature 259 278 4.6E-6 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS08875 20aecfa6bc0324503228c21d321a0848 1180 PRINTS PR01183 Ribonucleotide reductase large chain signature 528 550 4.6E-6 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS02930 060935fa895e3fa20adbaa87503754fd 411 Gene3D G3DSA:2.120.10.10 31 238 5.2E-15 T 23-04-2016 IPR011040 Sialidases NIDE_RS02930 060935fa895e3fa20adbaa87503754fd 411 Pfam PF13088 BNR repeat-like domain 233 378 2.1E-9 T 23-04-2016 IPR011040 Sialidases NIDE_RS02930 060935fa895e3fa20adbaa87503754fd 411 Gene3D G3DSA:2.120.10.10 239 385 4.6E-21 T 23-04-2016 IPR011040 Sialidases NIDE_RS02930 060935fa895e3fa20adbaa87503754fd 411 SUPERFAMILY SSF50939 228 381 1.67E-22 T 23-04-2016 IPR011040 Sialidases NIDE_RS02930 060935fa895e3fa20adbaa87503754fd 411 SUPERFAMILY SSF50939 84 174 1.67E-22 T 23-04-2016 IPR011040 Sialidases NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 ProSitePatterns PS00761 Signal peptidases I signature 3. 204 217 - T 23-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 ProSitePatterns PS00501 Signal peptidases I serine active site. 75 82 - T 23-04-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: REACT_15380 NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 Pfam PF00717 Peptidase S24-like 72 167 2.1E-19 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 1.2E-23 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 66 82 1.2E-23 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 199 218 1.2E-23 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 Gene3D G3DSA:2.10.109.10 199 253 1.8E-52 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 Gene3D G3DSA:2.10.109.10 63 154 1.8E-52 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 51 239 4.4E-52 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 PANTHER PTHR12383 123 239 3.6E-68 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 PANTHER PTHR12383 39 98 3.6E-68 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 23-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 SUPERFAMILY SSF51306 64 257 2.09E-62 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 PANTHER PTHR12383:SF27 123 239 3.6E-68 T 23-04-2016 NIDE_RS11710 d9a6181cf5e2c15ed06f303345b56833 259 PANTHER PTHR12383:SF27 39 98 3.6E-68 T 23-04-2016 NIDE_RS11580 134bd6b6b0351d8c9a01f5b2e513ad93 289 Pfam PF08668 HDOD domain 32 219 7.4E-46 T 23-04-2016 IPR013976 Metal-dependent hydrolase HDOD NIDE_RS11580 134bd6b6b0351d8c9a01f5b2e513ad93 289 Gene3D G3DSA:1.10.3150.10 15 275 4.0E-57 T 23-04-2016 IPR013976 Metal-dependent hydrolase HDOD NIDE_RS11580 134bd6b6b0351d8c9a01f5b2e513ad93 289 PANTHER PTHR33525 16 240 1.1E-39 T 23-04-2016 NIDE_RS11580 134bd6b6b0351d8c9a01f5b2e513ad93 289 PANTHER PTHR33525:SF3 16 240 1.1E-39 T 23-04-2016 NIDE_RS11580 134bd6b6b0351d8c9a01f5b2e513ad93 289 SUPERFAMILY SSF109604 20 280 2.59E-53 T 23-04-2016 NIDE_RS07245 cd6dc5fba9bb0fb35116f2a85b453de8 139 PANTHER PTHR23404:SF2 3 137 3.5E-34 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS07245 cd6dc5fba9bb0fb35116f2a85b453de8 139 PANTHER PTHR23404 3 137 3.5E-34 T 23-04-2016 NIDE_RS07245 cd6dc5fba9bb0fb35116f2a85b453de8 139 SUPERFAMILY SSF54690 3 137 1.31E-44 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS07245 cd6dc5fba9bb0fb35116f2a85b453de8 139 Pfam PF02391 MoaE protein 5 118 3.8E-35 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS07245 cd6dc5fba9bb0fb35116f2a85b453de8 139 Gene3D G3DSA:3.90.1170.40 2 137 4.0E-48 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 NIDE_RS15210 0188ae5b0e63246e430f77207dd0d741 192 Gene3D G3DSA:2.160.10.10 81 180 7.9E-21 T 23-04-2016 NIDE_RS15210 0188ae5b0e63246e430f77207dd0d741 192 PANTHER PTHR23416:SF55 33 172 1.2E-23 T 23-04-2016 NIDE_RS15210 0188ae5b0e63246e430f77207dd0d741 192 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 138 166 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 NIDE_RS15210 0188ae5b0e63246e430f77207dd0d741 192 PANTHER PTHR23416 33 172 1.2E-23 T 23-04-2016 NIDE_RS15210 0188ae5b0e63246e430f77207dd0d741 192 SUPERFAMILY SSF51161 52 172 1.25E-25 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS15210 0188ae5b0e63246e430f77207dd0d741 192 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 130 162 5.8E-8 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS09530 909521bcb7ad69349f678615bc4b4c08 270 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 8 251 5.0E-81 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 NIDE_RS09530 909521bcb7ad69349f678615bc4b4c08 270 PANTHER PTHR30589 1 262 9.9E-104 T 23-04-2016 NIDE_RS09530 909521bcb7ad69349f678615bc4b4c08 270 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 137 149 - T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 NIDE_RS09530 909521bcb7ad69349f678615bc4b4c08 270 PANTHER PTHR30589:SF0 1 262 9.9E-104 T 23-04-2016 NIDE_RS09530 909521bcb7ad69349f678615bc4b4c08 270 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 5 257 20.394 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 NIDE_RS09530 909521bcb7ad69349f678615bc4b4c08 270 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 257 6.6E-80 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 NIDE_RS00085 28de1af5bfbabf136c31cc2c616f6620 78 Pfam PF09360 Iron-binding zinc finger CDGSH type 14 40 1.7E-11 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 NIDE_RS00085 28de1af5bfbabf136c31cc2c616f6620 78 Pfam PF09360 Iron-binding zinc finger CDGSH type 52 76 7.9E-11 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 NIDE_RS00085 28de1af5bfbabf136c31cc2c616f6620 78 SMART SM00704 9 45 6.4E-10 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 NIDE_RS00085 28de1af5bfbabf136c31cc2c616f6620 78 SMART SM00704 46 77 0.0039 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 NIDE_RS00085 28de1af5bfbabf136c31cc2c616f6620 78 PANTHER PTHR13680:SF22 1 78 2.0E-27 T 23-04-2016 NIDE_RS00085 28de1af5bfbabf136c31cc2c616f6620 78 PANTHER PTHR13680 1 78 2.0E-27 T 23-04-2016 NIDE_RS09785 bacf6c39fbc33822cc28a22e79586b75 230 SUPERFAMILY SSF46689 8 125 6.99E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS09785 bacf6c39fbc33822cc28a22e79586b75 230 Pfam PF13551 Winged helix-turn helix 26 81 7.5E-10 T 23-04-2016 NIDE_RS09785 bacf6c39fbc33822cc28a22e79586b75 230 SUPERFAMILY SSF53098 143 214 9.36E-6 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09785 bacf6c39fbc33822cc28a22e79586b75 230 Gene3D G3DSA:3.30.420.10 143 214 1.7E-5 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 633 651 - T 23-04-2016 IPR028299 ClpA/B, conserved site 2 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 Gene3D G3DSA:3.40.50.300 554 779 3.0E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 Gene3D G3DSA:1.10.8.60 780 859 4.5E-31 T 23-04-2016 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 SMART SM01086 769 858 2.6E-36 T 23-04-2016 IPR019489 Clp ATPase, C-terminal NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 202 333 7.2E-13 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 Pfam PF07724 AAA domain (Cdc48 subfamily) 598 763 2.2E-57 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 Gene3D G3DSA:1.10.1780.10 1 149 1.4E-40 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 SUPERFAMILY SSF81923 4 155 6.47E-40 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 PANTHER PTHR11638 1 862 0.0 T 23-04-2016 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 SMART SM00382 599 795 4.0E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 SMART SM00382 197 341 3.3E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 677 695 4.2E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 710 724 4.2E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 603 621 4.2E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 648 666 4.2E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 PANTHER PTHR11638:SF18 1 862 0.0 T 23-04-2016 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 SUPERFAMILY SSF52540 548 855 9.36E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 5.2E-16 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 97 144 9.7E-7 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 857 0.0 T 23-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 849 1.2E-27 T 23-04-2016 IPR019489 Clp ATPase, C-terminal NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 Gene3D G3DSA:1.10.8.60 342 427 1.0E-35 T 23-04-2016 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 Gene3D G3DSA:3.40.50.300 158 341 1.4E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 293 305 - T 23-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 NIDE_RS10360 3851d65f8dd422fa5811a1e6d36571f8 864 SUPERFAMILY SSF52540 156 547 1.1E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS19305 2c5502ff96c8f502c51dce3f9e2fd2cb 239 SUPERFAMILY SSF51366 8 230 9.72E-62 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 NIDE_RS19305 2c5502ff96c8f502c51dce3f9e2fd2cb 239 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 8 231 33.373 T 23-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS19305 2c5502ff96c8f502c51dce3f9e2fd2cb 239 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 10 225 8.8E-41 T 23-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS19305 2c5502ff96c8f502c51dce3f9e2fd2cb 239 PANTHER PTHR32119:SF2 1 238 5.6E-82 T 23-04-2016 NIDE_RS19305 2c5502ff96c8f502c51dce3f9e2fd2cb 239 SMART SM00934 10 226 2.3E-71 T 23-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS19305 2c5502ff96c8f502c51dce3f9e2fd2cb 239 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 11 226 9.1E-51 T 23-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 NIDE_RS19305 2c5502ff96c8f502c51dce3f9e2fd2cb 239 PANTHER PTHR32119 1 238 5.6E-82 T 23-04-2016 NIDE_RS19305 2c5502ff96c8f502c51dce3f9e2fd2cb 239 Gene3D G3DSA:3.20.20.70 8 230 4.8E-72 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS18575 94e2953a49c85b73888bc9dbfc2b785c 494 SUPERFAMILY SSF53335 97 196 4.56E-11 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS18575 94e2953a49c85b73888bc9dbfc2b785c 494 SUPERFAMILY SSF53335 290 364 4.56E-11 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS18575 94e2953a49c85b73888bc9dbfc2b785c 494 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 96 214 3.0E-6 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA NIDE_RS18575 94e2953a49c85b73888bc9dbfc2b785c 494 Gene3D G3DSA:3.40.50.150 97 186 1.3E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS18575 94e2953a49c85b73888bc9dbfc2b785c 494 Gene3D G3DSA:3.40.50.150 287 366 1.3E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13970 3e0ca4d6cb9348d1c1f30d0feb6d7a97 473 SUPERFAMILY SSF109604 16 360 3.37E-70 T 23-04-2016 NIDE_RS13970 3e0ca4d6cb9348d1c1f30d0feb6d7a97 473 PANTHER PTHR11373 13 363 3.1E-58 T 23-04-2016 NIDE_RS13970 3e0ca4d6cb9348d1c1f30d0feb6d7a97 473 Pfam PF01966 HD domain 74 172 5.3E-10 T 23-04-2016 IPR006674 HD domain NIDE_RS13970 3e0ca4d6cb9348d1c1f30d0feb6d7a97 473 SMART SM00471 70 228 1.3E-8 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS13970 3e0ca4d6cb9348d1c1f30d0feb6d7a97 473 Gene3D G3DSA:1.10.3210.10 190 295 5.1E-62 T 23-04-2016 IPR006674 HD domain NIDE_RS13970 3e0ca4d6cb9348d1c1f30d0feb6d7a97 473 Gene3D G3DSA:1.10.3210.10 16 151 5.1E-62 T 23-04-2016 IPR006674 HD domain NIDE_RS13970 3e0ca4d6cb9348d1c1f30d0feb6d7a97 473 PANTHER PTHR11373:SF4 13 363 3.1E-58 T 23-04-2016 NIDE_RS15045 9a14a775228fdde1a510a45cc85e42db 594 SUPERFAMILY SSF46626 178 287 5.65E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15045 9a14a775228fdde1a510a45cc85e42db 594 SUPERFAMILY SSF46626 16 157 3.67E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15045 9a14a775228fdde1a510a45cc85e42db 594 Gene3D G3DSA:1.10.760.10 180 290 3.3E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15045 9a14a775228fdde1a510a45cc85e42db 594 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 191 283 7.3E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15045 9a14a775228fdde1a510a45cc85e42db 594 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 54 154 4.2E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15045 9a14a775228fdde1a510a45cc85e42db 594 Gene3D G3DSA:1.10.760.10 48 157 2.0E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS13775 543652a11ba5356418553ece815473c1 180 PANTHER PTHR11055:SF15 2 180 1.0E-77 T 23-04-2016 NIDE_RS13775 543652a11ba5356418553ece815473c1 180 Pfam PF01583 Adenylylsulphate kinase 4 162 2.3E-58 T 23-04-2016 NIDE_RS13775 543652a11ba5356418553ece815473c1 180 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 2 179 31.73 T 23-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 NIDE_RS13775 543652a11ba5356418553ece815473c1 180 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 2 174 1.7E-57 T 23-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 NIDE_RS13775 543652a11ba5356418553ece815473c1 180 SUPERFAMILY SSF52540 3 176 3.72E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13775 543652a11ba5356418553ece815473c1 180 PANTHER PTHR11055 2 180 1.0E-77 T 23-04-2016 NIDE_RS13775 543652a11ba5356418553ece815473c1 180 Gene3D G3DSA:3.40.50.300 3 176 3.0E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12950 4a78dc69db0d390e161c736460773f04 190 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 123 179 8.2E-6 T 23-04-2016 IPR007690 Type II secretion system, protein M GO:0006858 NIDE_RS12950 4a78dc69db0d390e161c736460773f04 190 Gene3D G3DSA:3.30.70.60 130 180 6.0E-7 T 23-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 NIDE_RS12460 427f351a7a6a7f1f31bf255d391c5eb3 669 SUPERFAMILY SSF82171 345 552 1.04E-8 T 23-04-2016 NIDE_RS12460 427f351a7a6a7f1f31bf255d391c5eb3 669 SUPERFAMILY SSF82171 604 663 1.04E-8 T 23-04-2016 NIDE_RS12460 427f351a7a6a7f1f31bf255d391c5eb3 669 Gene3D G3DSA:2.120.10.60 588 663 3.6E-4 T 23-04-2016 NIDE_RS00705 d1b59dffec16fe0ad317347407f48fb1 293 Pfam PF14371 Domain of unknown function (DUF4412) 26 215 1.7E-55 T 23-04-2016 IPR025524 Domain of unknown function DUF4412 NIDE_RS16615 569ce609b03cbe79f442481f93359557 228 SMART SM00507 171 222 3.2E-8 T 23-04-2016 IPR003615 HNH nuclease NIDE_RS16615 569ce609b03cbe79f442481f93359557 228 Pfam PF01844 HNH endonuclease 184 227 1.3E-6 T 23-04-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 NIDE_RS03370 c50007b1daf2f62f08cfaa0f7a442a62 483 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 339 361 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NIDE_RS03370 c50007b1daf2f62f08cfaa0f7a442a62 483 Pfam PF01066 CDP-alcohol phosphatidyltransferase 295 361 3.7E-9 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 NIDE_RS03370 c50007b1daf2f62f08cfaa0f7a442a62 483 SUPERFAMILY SSF53448 40 181 2.06E-6 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS03370 c50007b1daf2f62f08cfaa0f7a442a62 483 Gene3D G3DSA:3.90.550.10 40 201 2.5E-4 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS04130 8b82b7fbba2331110424af1f61bad27a 268 Pfam PF00034 Cytochrome c 167 252 5.6E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS04130 8b82b7fbba2331110424af1f61bad27a 268 Gene3D G3DSA:1.10.760.10 155 253 1.7E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS04130 8b82b7fbba2331110424af1f61bad27a 268 SUPERFAMILY SSF46626 166 264 1.45E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS18640 a4c850d39b328c25419efbd2ab320e4a 353 PANTHER PTHR30473 2 333 2.8E-160 T 23-04-2016 NIDE_RS18640 a4c850d39b328c25419efbd2ab320e4a 353 PANTHER PTHR30473:SF1 2 333 2.8E-160 T 23-04-2016 NIDE_RS18640 a4c850d39b328c25419efbd2ab320e4a 353 Gene3D G3DSA:3.40.50.300 106 309 1.6E-88 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18640 a4c850d39b328c25419efbd2ab320e4a 353 SUPERFAMILY SSF52540 106 305 2.39E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS18640 a4c850d39b328c25419efbd2ab320e4a 353 Pfam PF02562 PhoH-like protein 107 310 1.4E-93 T 23-04-2016 IPR003714 PhoH-like protein GO:0005524 NIDE_RS18640 a4c850d39b328c25419efbd2ab320e4a 353 SMART SM00382 123 280 0.0053 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS07370 9b7ef9374ebbf30d6b514257d27aa428 282 Gene3D G3DSA:2.60.40.10 68 112 2.0E-4 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS04210 bea0b3068be82bcc96fdbd78b094d670 277 SUPERFAMILY SSF52096 70 140 6.96E-11 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS04210 bea0b3068be82bcc96fdbd78b094d670 277 Gene3D G3DSA:3.90.226.10 76 194 2.7E-7 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS20805 2cdac6d624a6cd8a931ce6cae167cc67 303 PANTHER PTHR22916 16 236 9.2E-54 T 23-04-2016 NIDE_RS20805 2cdac6d624a6cd8a931ce6cae167cc67 303 SUPERFAMILY SSF53448 16 227 1.03E-57 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20805 2cdac6d624a6cd8a931ce6cae167cc67 303 Gene3D G3DSA:3.90.550.10 15 239 9.5E-59 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20805 2cdac6d624a6cd8a931ce6cae167cc67 303 Pfam PF00535 Glycosyl transferase family 2 17 174 2.3E-34 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS20805 2cdac6d624a6cd8a931ce6cae167cc67 303 Gene3D G3DSA:1.25.40.10 252 302 1.0E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 SUPERFAMILY SSF52172 6 199 2.56E-40 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 SUPERFAMILY SSF52540 155 401 5.12E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 SUPERFAMILY SSF46689 371 469 3.09E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 Gene3D G3DSA:3.40.50.2300 5 121 2.1E-32 T 23-04-2016 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 SMART SM00382 175 318 7.8E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 Gene3D G3DSA:1.10.10.60 413 469 4.1E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 Gene3D G3DSA:1.10.8.60 329 404 4.4E-25 T 23-04-2016 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 241 256 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 179 192 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 Pfam PF00072 Response regulator receiver domain 7 115 7.5E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 371 380 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 PANTHER PTHR32071 3 469 4.5E-174 T 23-04-2016 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 Pfam PF00158 Sigma-54 interaction domain 155 321 1.7E-66 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 Gene3D G3DSA:3.40.50.300 154 327 7.3E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 Pfam PF02954 Bacterial regulatory protein, Fis family 429 462 8.1E-6 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS16115 be4a2c081c0cae1ff360cdf6b4c314ad 473 SMART SM00448 5 116 1.2E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS02160 0c82c922f98f15622d2d9e93d6156da0 287 PANTHER PTHR11807 17 269 2.3E-101 T 23-04-2016 NIDE_RS02160 0c82c922f98f15622d2d9e93d6156da0 287 SUPERFAMILY SSF52402 31 259 1.61E-49 T 23-04-2016 NIDE_RS02160 0c82c922f98f15622d2d9e93d6156da0 287 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 13 274 54.513 T 23-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 NIDE_RS02160 0c82c922f98f15622d2d9e93d6156da0 287 PIRSF PIRSF004976 4 277 7.0E-64 T 23-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 NIDE_RS02160 0c82c922f98f15622d2d9e93d6156da0 287 Gene3D G3DSA:3.40.50.620 29 210 1.6E-18 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS02160 0c82c922f98f15622d2d9e93d6156da0 287 Pfam PF01171 PP-loop family 44 204 1.4E-13 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal NIDE_RS02160 0c82c922f98f15622d2d9e93d6156da0 287 PANTHER PTHR11807:SF16 17 269 2.3E-101 T 23-04-2016 NIDE_RS13875 6de0710e04708f934f51adaa2f2cd143 366 Gene3D G3DSA:3.40.50.2000 152 342 6.4E-29 T 23-04-2016 NIDE_RS13875 6de0710e04708f934f51adaa2f2cd143 366 PANTHER PTHR12526 2 365 9.4E-65 T 23-04-2016 NIDE_RS13875 6de0710e04708f934f51adaa2f2cd143 366 SUPERFAMILY SSF53756 4 364 7.97E-78 T 23-04-2016 NIDE_RS13875 6de0710e04708f934f51adaa2f2cd143 366 Pfam PF00534 Glycosyl transferases group 1 177 342 1.3E-33 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS13875 6de0710e04708f934f51adaa2f2cd143 366 Pfam PF13439 Glycosyltransferase Family 4 12 167 8.3E-17 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS18660 8e3fe0963eb40593889f017e9e4d9800 210 Pfam PF14341 PilX N-terminal 23 56 5.2E-6 T 23-04-2016 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain NIDE_RS01525 39bc8c0034c3e97d0fcc4dfa19001b9a 99 Gene3D G3DSA:2.20.25.10 23 95 2.1E-9 T 23-04-2016 NIDE_RS01525 39bc8c0034c3e97d0fcc4dfa19001b9a 99 Pfam PF03966 Trm112p-like protein 17 82 4.8E-5 T 23-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 NIDE_RS01525 39bc8c0034c3e97d0fcc4dfa19001b9a 99 SUPERFAMILY SSF158997 58 97 7.85E-11 T 23-04-2016 NIDE_RS01525 39bc8c0034c3e97d0fcc4dfa19001b9a 99 SUPERFAMILY SSF158997 15 30 7.85E-11 T 23-04-2016 NIDE_RS13200 0c569783be39d887cfe4bfc9f7e157c0 313 Gene3D G3DSA:2.60.120.620 120 256 3.6E-16 T 23-04-2016 NIDE_RS13200 0c569783be39d887cfe4bfc9f7e157c0 313 SUPERFAMILY SSF51197 116 253 2.75E-19 T 23-04-2016 NIDE_RS13200 0c569783be39d887cfe4bfc9f7e157c0 313 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 65 240 4.4E-6 T 23-04-2016 IPR008775 Phytanoyl-CoA dioxygenase NIDE_RS18340 8994d7ec9f4890dba5cb1e77a74480f6 405 PIRSF PIRSF005572 2 385 5.8E-132 T 23-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 NIDE_RS18340 8994d7ec9f4890dba5cb1e77a74480f6 405 PANTHER PTHR11601:SF34 4 405 1.1E-213 T 23-04-2016 NIDE_RS18340 8994d7ec9f4890dba5cb1e77a74480f6 405 Gene3D G3DSA:3.90.1150.10 254 375 1.3E-47 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS18340 8994d7ec9f4890dba5cb1e77a74480f6 405 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 396 52.173 T 23-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 NIDE_RS18340 8994d7ec9f4890dba5cb1e77a74480f6 405 PANTHER PTHR11601 4 405 1.1E-213 T 23-04-2016 NIDE_RS18340 8994d7ec9f4890dba5cb1e77a74480f6 405 SUPERFAMILY SSF53383 4 391 2.63E-106 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS18340 8994d7ec9f4890dba5cb1e77a74480f6 405 Pfam PF00266 Aminotransferase class-V 5 369 4.8E-89 T 23-04-2016 IPR000192 Aminotransferase class V domain NIDE_RS18340 8994d7ec9f4890dba5cb1e77a74480f6 405 Gene3D G3DSA:3.40.640.10 16 253 2.6E-97 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS18340 8994d7ec9f4890dba5cb1e77a74480f6 405 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 196 215 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 PANTHER PTHR10098 9 227 4.9E-23 T 23-04-2016 NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 SMART SM00028 122 155 30.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 SMART SM00028 202 235 150.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 SMART SM00028 42 75 0.033 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 SMART SM00028 162 195 17.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 SMART SM00028 82 115 0.87 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 Gene3D G3DSA:1.25.40.10 9 231 4.1E-36 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 Pfam PF13424 Tetratricopeptide repeat 7 69 1.7E-7 T 23-04-2016 NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 Pfam PF13424 Tetratricopeptide repeat 81 150 1.2E-11 T 23-04-2016 NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 SUPERFAMILY SSF48452 116 242 6.64E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08040 dba0bfe5314248ba8a496cc44dc632b4 255 SUPERFAMILY SSF48452 6 150 1.86E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20715 03f61e21c51ec468ee7f506e04355e54 335 SUPERFAMILY SSF88713 37 61 8.62E-14 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS20715 03f61e21c51ec468ee7f506e04355e54 335 SUPERFAMILY SSF88713 102 300 8.62E-14 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS20715 03f61e21c51ec468ee7f506e04355e54 335 Gene3D G3DSA:3.20.20.370 104 299 1.1E-7 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS20715 03f61e21c51ec468ee7f506e04355e54 335 Gene3D G3DSA:3.20.20.370 26 58 1.1E-7 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS21080 a2360f22c5e58e2672f0d401648ab9e1 258 PANTHER PTHR11911 20 137 1.3E-15 T 23-04-2016 NIDE_RS21080 a2360f22c5e58e2672f0d401648ab9e1 258 Pfam PF07238 PilZ domain 145 249 1.6E-5 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS21080 a2360f22c5e58e2672f0d401648ab9e1 258 Pfam PF00571 CBS domain 85 137 3.4E-7 T 23-04-2016 IPR000644 CBS domain NIDE_RS21080 a2360f22c5e58e2672f0d401648ab9e1 258 Pfam PF00571 CBS domain 20 72 0.0032 T 23-04-2016 IPR000644 CBS domain NIDE_RS21080 a2360f22c5e58e2672f0d401648ab9e1 258 Gene3D G3DSA:3.10.580.10 19 134 5.2E-22 T 23-04-2016 NIDE_RS21080 a2360f22c5e58e2672f0d401648ab9e1 258 SUPERFAMILY SSF54631 17 134 1.01E-22 T 23-04-2016 NIDE_RS10595 1471482269581c2d203627708790d954 370 Pfam PF02119 Flagellar P-ring protein 19 369 1.3E-123 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 Hamap MF_00416 Flagellar P-ring protein [flgI]. 1 370 33.981 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 PANTHER PTHR30381:SF0 1 370 1.9E-126 T 23-04-2016 NIDE_RS10595 1471482269581c2d203627708790d954 370 PRINTS PR01010 Flagellar P-ring protein signature 189 207 7.5E-71 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 PRINTS PR01010 Flagellar P-ring protein signature 163 181 7.5E-71 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 PRINTS PR01010 Flagellar P-ring protein signature 253 265 7.5E-71 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 PRINTS PR01010 Flagellar P-ring protein signature 103 120 7.5E-71 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 PRINTS PR01010 Flagellar P-ring protein signature 120 138 7.5E-71 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 PRINTS PR01010 Flagellar P-ring protein signature 81 100 7.5E-71 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 PRINTS PR01010 Flagellar P-ring protein signature 54 69 7.5E-71 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 PRINTS PR01010 Flagellar P-ring protein signature 19 34 7.5E-71 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 PRINTS PR01010 Flagellar P-ring protein signature 34 49 7.5E-71 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 NIDE_RS10595 1471482269581c2d203627708790d954 370 PANTHER PTHR30381 1 370 1.9E-126 T 23-04-2016 NIDE_RS19595 41d3d08ef42cf00a56178b1bc4bb9f8e 180 PANTHER PTHR13256 4 176 9.9E-46 T 23-04-2016 NIDE_RS19595 41d3d08ef42cf00a56178b1bc4bb9f8e 180 Pfam PF13302 Acetyltransferase (GNAT) domain 11 152 5.9E-33 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS19595 41d3d08ef42cf00a56178b1bc4bb9f8e 180 SUPERFAMILY SSF55729 1 175 1.71E-42 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS19595 41d3d08ef42cf00a56178b1bc4bb9f8e 180 Gene3D G3DSA:3.40.630.30 2 180 4.5E-50 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS19595 41d3d08ef42cf00a56178b1bc4bb9f8e 180 PANTHER PTHR13256:SF19 4 176 9.9E-46 T 23-04-2016 NIDE_RS11240 0f815ea61ef83532ff8175829adcc837 151 PANTHER PTHR11527 6 149 1.4E-42 T 23-04-2016 IPR031107 Small heat shock protein HSP20 NIDE_RS11240 0f815ea61ef83532ff8175829adcc837 151 Pfam PF00011 Hsp20/alpha crystallin family 49 150 2.5E-29 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain NIDE_RS11240 0f815ea61ef83532ff8175829adcc837 151 SUPERFAMILY SSF49764 35 150 9.07E-43 T 23-04-2016 IPR008978 HSP20-like chaperone NIDE_RS11240 0f815ea61ef83532ff8175829adcc837 151 Gene3D G3DSA:2.60.40.790 1 150 5.0E-51 T 23-04-2016 IPR008978 HSP20-like chaperone NIDE_RS11240 0f815ea61ef83532ff8175829adcc837 151 PANTHER PTHR11527:SF118 6 149 1.4E-42 T 23-04-2016 NIDE_RS20595 34b96980cd31656f2175d7a17dd05056 426 Pfam PF13699 Domain of unknown function (DUF4157) 95 172 5.7E-32 T 23-04-2016 IPR025295 Domain of unknown function DUF4157 NIDE_RS18795 c00c681a7508098404609a013af1f5f9 114 Pfam PF06305 Protein of unknown function (DUF1049) 23 86 8.4E-12 T 23-04-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 NIDE_RS19810 88d33d3ae77df9a2f9f128c8737af15c 184 Pfam PF08670 MEKHLA domain 42 183 5.9E-56 T 23-04-2016 IPR013978 MEKHLA NIDE_RS03620 bc9f129953438e605e5e6da648267a2a 117 SUPERFAMILY SSF54995 1 96 1.44E-32 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS03620 bc9f129953438e605e5e6da648267a2a 117 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 22.051 T 23-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS03620 bc9f129953438e605e5e6da648267a2a 117 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 1.5E-26 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS03620 bc9f129953438e605e5e6da648267a2a 117 PANTHER PTHR21011 1 94 3.0E-28 T 23-04-2016 NIDE_RS03620 bc9f129953438e605e5e6da648267a2a 117 Gene3D G3DSA:3.30.70.60 1 96 2.8E-34 T 23-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 NIDE_RS03620 bc9f129953438e605e5e6da648267a2a 117 Pfam PF01250 Ribosomal protein S6 4 92 9.5E-29 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 Gene3D G3DSA:3.40.50.740 125 365 4.6E-63 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 Gene3D G3DSA:3.40.50.740 369 612 5.8E-48 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 SUPERFAMILY SSF53706 512 672 3.7E-138 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 SUPERFAMILY SSF53706 10 481 3.7E-138 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 SUPERFAMILY SSF50692 658 801 3.39E-35 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 PANTHER PTHR11615:SF119 89 473 1.0E-171 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 PANTHER PTHR11615:SF119 600 816 1.0E-171 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 PANTHER PTHR11615:SF119 501 584 1.0E-171 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 PANTHER PTHR11615:SF119 10 54 1.0E-171 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 Pfam PF01568 Molydopterin dinucleotide binding domain 690 795 4.1E-22 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 Pfam PF00384 Molybdopterin oxidoreductase 124 579 6.0E-35 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 PANTHER PTHR11615 89 473 1.0E-171 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 PANTHER PTHR11615 600 816 1.0E-171 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 PANTHER PTHR11615 501 584 1.0E-171 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 PANTHER PTHR11615 10 54 1.0E-171 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 Gene3D G3DSA:2.40.40.20 685 803 4.5E-33 T 23-04-2016 NIDE_RS16930 7fef696989bb45966296ab42f2815ca9 820 TIGRFAM TIGR02693 arsenite_ox_L: arsenite oxidase, large subunit 10 802 0.0 T 23-04-2016 IPR014066 Arsenite oxidase, large subunit MetaCyc: PWY-7429 NIDE_RS11640 cbda0fcf587c7251c33518679cb8ae1d 186 Gene3D G3DSA:3.40.50.2020 13 178 2.1E-49 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS11640 cbda0fcf587c7251c33518679cb8ae1d 186 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 12 185 36.985 T 23-04-2016 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 NIDE_RS11640 cbda0fcf587c7251c33518679cb8ae1d 186 SUPERFAMILY SSF53271 13 181 2.49E-41 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like NIDE_RS11640 cbda0fcf587c7251c33518679cb8ae1d 186 PANTHER PTHR11608 9 186 1.8E-87 T 23-04-2016 NIDE_RS11640 cbda0fcf587c7251c33518679cb8ae1d 186 Pfam PF00156 Phosphoribosyl transferase domain 19 156 2.0E-21 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 NIDE_RS15915 253a94079ec0d50dbb87c6d462b00853 142 Gene3D G3DSA:3.30.70.1060 1 118 1.2E-40 T 23-04-2016 NIDE_RS15915 253a94079ec0d50dbb87c6d462b00853 142 PANTHER PTHR35174 2 137 3.8E-67 T 23-04-2016 NIDE_RS15915 253a94079ec0d50dbb87c6d462b00853 142 Pfam PF03795 YCII-related domain 1 112 1.1E-22 T 23-04-2016 IPR005545 YCII-related NIDE_RS15915 253a94079ec0d50dbb87c6d462b00853 142 SUPERFAMILY SSF54909 1 119 1.07E-36 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS15915 253a94079ec0d50dbb87c6d462b00853 142 PANTHER PTHR35174:SF1 2 137 3.8E-67 T 23-04-2016 NIDE_RS20535 22a1911ba3b06687e6cbe6c697717548 571 Pfam PF00069 Protein kinase domain 12 258 4.7E-55 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 NIDE_RS20535 22a1911ba3b06687e6cbe6c697717548 571 PANTHER PTHR24362 1 352 1.2E-88 T 23-04-2016 NIDE_RS20535 22a1911ba3b06687e6cbe6c697717548 571 PANTHER PTHR24362 563 571 1.2E-88 T 23-04-2016 NIDE_RS20535 22a1911ba3b06687e6cbe6c697717548 571 Gene3D G3DSA:1.10.510.10 76 269 2.7E-57 T 23-04-2016 NIDE_RS20535 22a1911ba3b06687e6cbe6c697717548 571 SUPERFAMILY SSF56112 7 321 9.58E-83 T 23-04-2016 IPR011009 Protein kinase-like domain NIDE_RS20535 22a1911ba3b06687e6cbe6c697717548 571 Gene3D G3DSA:3.30.200.20 3 75 9.1E-24 T 23-04-2016 NIDE_RS20535 22a1911ba3b06687e6cbe6c697717548 571 SMART SM00220 10 267 1.6E-72 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 NIDE_RS20535 22a1911ba3b06687e6cbe6c697717548 571 PANTHER PTHR24362:SF160 1 352 1.2E-88 T 23-04-2016 NIDE_RS20535 22a1911ba3b06687e6cbe6c697717548 571 PANTHER PTHR24362:SF160 563 571 1.2E-88 T 23-04-2016 NIDE_RS20535 22a1911ba3b06687e6cbe6c697717548 571 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 23-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 SUPERFAMILY SSF55681 1 280 4.23E-131 T 23-04-2016 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 1 281 57.781 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 133 153 1.0E-62 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 55 70 1.0E-62 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 241 257 1.0E-62 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 76 96 1.0E-62 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 107 131 1.0E-62 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 156 171 1.0E-62 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 3 279 5.4E-148 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 2 288 9.4E-147 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 PANTHER PTHR30075 2 288 4.6E-221 T 23-04-2016 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 Gene3D G3DSA:3.30.930.10 2 202 1.3E-100 T 23-04-2016 NIDE_RS07495 ffed107df4a524d815786dcafa13db19 306 Gene3D G3DSA:1.20.58.180 206 286 1.2E-36 T 23-04-2016 NIDE_RS11965 c88a22b195bb5a43420f8aad47b8bf75 447 PIRSF PIRSF006446 1 446 6.8E-129 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 NIDE_RS11965 c88a22b195bb5a43420f8aad47b8bf75 447 PANTHER PTHR30365 1 442 2.5E-154 T 23-04-2016 NIDE_RS11965 c88a22b195bb5a43420f8aad47b8bf75 447 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 437 2.1E-134 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 NIDE_RS11965 c88a22b195bb5a43420f8aad47b8bf75 447 PANTHER PTHR30365:SF0 1 442 2.5E-154 T 23-04-2016 NIDE_RS04090 a8768a766f8966e7eaacd04507db03b6 583 Pfam PF14052 Capsule assembly protein Wzi 79 554 4.5E-79 T 23-04-2016 IPR026950 Capsule assembly protein Wzi NIDE_RS05465 3a13df1eaffea4180c088268a11e6395 347 SUPERFAMILY SSF51556 26 298 5.96E-29 T 23-04-2016 IPR032466 Metal-dependent hydrolase NIDE_RS05465 3a13df1eaffea4180c088268a11e6395 347 Gene3D G3DSA:3.20.20.140 77 295 6.0E-29 T 23-04-2016 NIDE_RS05465 3a13df1eaffea4180c088268a11e6395 347 Gene3D G3DSA:3.20.20.140 26 36 6.0E-29 T 23-04-2016 NIDE_RS05465 3a13df1eaffea4180c088268a11e6395 347 Pfam PF04909 Amidohydrolase 27 293 1.2E-18 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 NIDE_RS07140 0122f4c9730d40fff8720483586b116e 232 SMART SM01101 6 231 6.9E-68 T 23-04-2016 IPR010179 CRISPR-associated protein Cse3 NIDE_RS07140 0122f4c9730d40fff8720483586b116e 232 SUPERFAMILY SSF117987 28 75 1.65E-6 T 23-04-2016 NIDE_RS07140 0122f4c9730d40fff8720483586b116e 232 SUPERFAMILY SSF117987 93 231 6.28E-24 T 23-04-2016 NIDE_RS07140 0122f4c9730d40fff8720483586b116e 232 Pfam PF08798 CRISPR associated protein 7 231 1.2E-47 T 23-04-2016 IPR010179 CRISPR-associated protein Cse3 NIDE_RS07140 0122f4c9730d40fff8720483586b116e 232 Gene3D G3DSA:3.30.70.1200 29 75 1.3E-4 T 23-04-2016 NIDE_RS07140 0122f4c9730d40fff8720483586b116e 232 Gene3D G3DSA:3.30.70.1210 93 231 4.6E-28 T 23-04-2016 NIDE_RS07140 0122f4c9730d40fff8720483586b116e 232 TIGRFAM TIGR01907 casE_Cse3: CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI 8 231 6.5E-38 T 23-04-2016 IPR010179 CRISPR-associated protein Cse3 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 PANTHER PTHR11082 1 134 1.4E-90 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 PANTHER PTHR11082 173 391 1.4E-90 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 Gene3D G3DSA:1.10.1200.80 304 375 7.9E-16 T 23-04-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 Pfam PF01207 Dihydrouridine synthase (Dus) 14 132 1.9E-29 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 Pfam PF01207 Dihydrouridine synthase (Dus) 173 362 3.1E-26 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 Gene3D G3DSA:3.20.20.70 12 133 4.7E-63 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 Gene3D G3DSA:3.20.20.70 171 281 4.7E-63 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 SUPERFAMILY SSF51395 169 368 1.06E-57 T 23-04-2016 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 SUPERFAMILY SSF51395 12 133 1.06E-57 T 23-04-2016 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 PANTHER PTHR11082:SF25 1 134 1.4E-90 T 23-04-2016 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 PANTHER PTHR11082:SF25 173 391 1.4E-90 T 23-04-2016 NIDE_RS21075 1f6d91ce6d0bc0ced0f8fc8ef69ed545 394 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 23-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 PIRSF PIRSF000446 2 311 3.5E-105 T 23-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 SUPERFAMILY SSF55048 129 197 3.14E-16 T 23-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 4 289 1.1E-104 T 23-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 8 312 3.6E-41 T 23-04-2016 IPR020801 Polyketide synthase, acyl transferase domain NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 Pfam PF00698 Acyl transferase domain 7 288 5.8E-40 T 23-04-2016 IPR014043 Acyl transferase NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 SUPERFAMILY SSF52151 5 122 3.66E-76 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 SUPERFAMILY SSF52151 190 310 3.66E-76 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 PANTHER PTHR10982 5 312 1.0E-130 T 23-04-2016 NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 Gene3D G3DSA:3.30.70.250 125 196 1.1E-27 T 23-04-2016 NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 Gene3D G3DSA:3.40.366.10 4 122 5.8E-70 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 NIDE_RS03650 fa8222dbd450931b3607b3dee33e04f8 316 Gene3D G3DSA:3.40.366.10 197 305 5.8E-70 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 NIDE_RS20440 f373ba3913bc6e4d751be7c6d691af01 226 Pfam PF16561 Glycogen recognition site of AMP-activated protein kinase 149 223 1.8E-11 T 23-04-2016 IPR032640 AMP-activated protein kinase, glycogen-binding domain NIDE_RS20440 f373ba3913bc6e4d751be7c6d691af01 226 Gene3D G3DSA:2.60.40.10 137 211 3.7E-14 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS20440 f373ba3913bc6e4d751be7c6d691af01 226 SUPERFAMILY SSF81296 139 223 4.6E-22 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS08930 70794acc0fcd588e5ad67250b43d9efc 280 Pfam PF00691 OmpA family 129 211 1.4E-6 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS08930 70794acc0fcd588e5ad67250b43d9efc 280 PANTHER PTHR30128 116 219 1.6E-12 T 23-04-2016 NIDE_RS08930 70794acc0fcd588e5ad67250b43d9efc 280 Gene3D G3DSA:3.30.1330.60 116 220 2.5E-13 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS08930 70794acc0fcd588e5ad67250b43d9efc 280 PANTHER PTHR30128:SF18 116 219 1.6E-12 T 23-04-2016 NIDE_RS08930 70794acc0fcd588e5ad67250b43d9efc 280 SUPERFAMILY SSF103088 116 219 1.02E-12 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS07845 71f49b73c5c7b3d65585c29d37af8258 350 PANTHER PTHR30518:SF2 6 343 6.4E-94 T 23-04-2016 NIDE_RS07845 71f49b73c5c7b3d65585c29d37af8258 350 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 4 337 4.5E-85 T 23-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like NIDE_RS07845 71f49b73c5c7b3d65585c29d37af8258 350 Gene3D G3DSA:3.30.160.60 304 335 5.0E-17 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 NIDE_RS07845 71f49b73c5c7b3d65585c29d37af8258 350 Pfam PF02618 YceG-like family 46 331 6.3E-86 T 23-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like NIDE_RS07845 71f49b73c5c7b3d65585c29d37af8258 350 PANTHER PTHR30518 6 343 6.4E-94 T 23-04-2016 NIDE_RS00070 7fcc0adbf11a7a447f97ab3c4d34380b 368 SUPERFAMILY SSF52218 147 343 4.95E-21 T 23-04-2016 IPR029039 Flavoprotein-like domain NIDE_RS00070 7fcc0adbf11a7a447f97ab3c4d34380b 368 Gene3D G3DSA:2.102.10.10 5 108 5.5E-27 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS00070 7fcc0adbf11a7a447f97ab3c4d34380b 368 Pfam PF03358 NADPH-dependent FMN reductase 149 294 2.7E-15 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 NIDE_RS00070 7fcc0adbf11a7a447f97ab3c4d34380b 368 PANTHER PTHR21496 3 110 3.7E-16 T 23-04-2016 NIDE_RS00070 7fcc0adbf11a7a447f97ab3c4d34380b 368 SUPERFAMILY SSF50022 5 107 2.36E-24 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS00070 7fcc0adbf11a7a447f97ab3c4d34380b 368 Pfam PF00355 Rieske [2Fe-2S] domain 5 82 7.2E-13 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS00070 7fcc0adbf11a7a447f97ab3c4d34380b 368 Gene3D G3DSA:3.40.50.360 146 347 2.2E-19 T 23-04-2016 IPR029039 Flavoprotein-like domain NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 Pfam PF02743 Cache domain 80 235 1.6E-12 T 23-04-2016 IPR033479 Double Cache domain 1 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 Gene3D G3DSA:1.10.287.130 352 424 6.1E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 Gene3D G3DSA:3.30.450.20 98 180 7.4E-10 T 23-04-2016 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 469 579 1.3E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 Gene3D G3DSA:3.30.565.10 431 577 5.0E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 PANTHER PTHR24423:SF518 48 58 1.4E-89 T 23-04-2016 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 PANTHER PTHR24423:SF518 303 582 1.4E-89 T 23-04-2016 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 Pfam PF00512 His Kinase A (phospho-acceptor) domain 361 427 1.3E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 SMART SM00388 360 428 2.7E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 PANTHER PTHR24423 48 58 1.4E-89 T 23-04-2016 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 PANTHER PTHR24423 303 582 1.4E-89 T 23-04-2016 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 SUPERFAMILY SSF55874 431 578 3.41E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 540 558 4.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 564 577 4.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 521 4.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 SMART SM00387 469 580 9.6E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 Gene3D G3DSA:3.30.450.20 181 309 1.8E-6 T 23-04-2016 NIDE_RS20420 a9d0e401fad0264338fc5937255c2f1d 590 SUPERFAMILY SSF47384 346 428 3.34E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS18510 f9c79311bd38873df4b6a00c5b38eafa 363 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 127 347 6.5E-15 T 23-04-2016 IPR032095 Saccharopine dehydrogenase, C-terminal NIDE_RS18510 f9c79311bd38873df4b6a00c5b38eafa 363 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 4 102 1.4E-14 T 23-04-2016 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 NIDE_RS18510 f9c79311bd38873df4b6a00c5b38eafa 363 SUPERFAMILY SSF55347 128 353 9.81E-53 T 23-04-2016 NIDE_RS18510 f9c79311bd38873df4b6a00c5b38eafa 363 Gene3D G3DSA:3.40.50.720 3 174 2.3E-28 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS18510 f9c79311bd38873df4b6a00c5b38eafa 363 SUPERFAMILY SSF51735 2 177 6.05E-18 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04465 79a402dcebef5e5a06a311bae1657965 95 SUPERFAMILY SSF54909 1 87 1.53E-23 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS04465 79a402dcebef5e5a06a311bae1657965 95 Pfam PF03795 YCII-related domain 1 84 3.7E-18 T 23-04-2016 IPR005545 YCII-related NIDE_RS04465 79a402dcebef5e5a06a311bae1657965 95 PANTHER PTHR33606 1 88 3.7E-19 T 23-04-2016 NIDE_RS04465 79a402dcebef5e5a06a311bae1657965 95 Gene3D G3DSA:3.30.70.1060 1 87 2.3E-25 T 23-04-2016 NIDE_RS17235 f7f1f66cba6d785e277ede94448de933 126 Gene3D G3DSA:1.10.760.10 14 122 1.9E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17235 f7f1f66cba6d785e277ede94448de933 126 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 36 118 2.4E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17235 f7f1f66cba6d785e277ede94448de933 126 SUPERFAMILY SSF46626 16 121 7.2E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS03185 382ad2b2ef50ce3a8809e377187f0f7d 185 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 9 176 2.2E-57 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 NIDE_RS03185 382ad2b2ef50ce3a8809e377187f0f7d 185 PANTHER PTHR10429:SF0 1 172 6.7E-68 T 23-04-2016 NIDE_RS03185 382ad2b2ef50ce3a8809e377187f0f7d 185 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 2 181 30.722 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 NIDE_RS03185 382ad2b2ef50ce3a8809e377187f0f7d 185 Gene3D G3DSA:3.10.300.10 3 176 5.4E-63 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 NIDE_RS03185 382ad2b2ef50ce3a8809e377187f0f7d 185 SUPERFAMILY SSF50486 3 176 6.67E-60 T 23-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 NIDE_RS03185 382ad2b2ef50ce3a8809e377187f0f7d 185 PANTHER PTHR10429 1 172 6.7E-68 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 NIDE_RS03185 382ad2b2ef50ce3a8809e377187f0f7d 185 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 6 176 2.6E-51 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 NIDE_RS08330 8ecafb21a70ca70e02d0818a7d2dfdd1 79 SUPERFAMILY SSF55021 4 73 2.06E-12 T 23-04-2016 NIDE_RS08330 8ecafb21a70ca70e02d0818a7d2dfdd1 79 Gene3D G3DSA:3.30.70.260 6 73 6.9E-11 T 23-04-2016 NIDE_RS08330 8ecafb21a70ca70e02d0818a7d2dfdd1 79 SMART SM00930 2 73 5.4E-7 T 23-04-2016 IPR018449 NIL domain NIDE_RS08330 8ecafb21a70ca70e02d0818a7d2dfdd1 79 Pfam PF09383 NIL domain 6 70 9.6E-9 T 23-04-2016 IPR018449 NIL domain NIDE_RS16500 bf24e1c1abd0832b11c537c9185bd12d 307 Pfam PF13581 Histidine kinase-like ATPase domain 174 293 8.2E-10 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS16500 bf24e1c1abd0832b11c537c9185bd12d 307 Pfam PF00072 Response regulator receiver domain 9 121 2.5E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS16500 bf24e1c1abd0832b11c537c9185bd12d 307 SMART SM00448 6 121 1.3E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS16500 bf24e1c1abd0832b11c537c9185bd12d 307 Gene3D G3DSA:3.30.565.10 141 286 2.3E-4 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS16500 bf24e1c1abd0832b11c537c9185bd12d 307 Gene3D G3DSA:3.40.50.2300 5 127 2.6E-34 T 23-04-2016 NIDE_RS16500 bf24e1c1abd0832b11c537c9185bd12d 307 SUPERFAMILY SSF52172 6 143 4.98E-35 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS16500 bf24e1c1abd0832b11c537c9185bd12d 307 PANTHER PTHR26402 6 126 1.8E-34 T 23-04-2016 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 PRINTS PR00834 HtrA/DegQ protease family signature 96 108 2.8E-32 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 PRINTS PR00834 HtrA/DegQ protease family signature 218 235 2.8E-32 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 PRINTS PR00834 HtrA/DegQ protease family signature 301 313 2.8E-32 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 PRINTS PR00834 HtrA/DegQ protease family signature 117 137 2.8E-32 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 PRINTS PR00834 HtrA/DegQ protease family signature 157 181 2.8E-32 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 PRINTS PR00834 HtrA/DegQ protease family signature 196 213 2.8E-32 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 Gene3D G3DSA:2.30.42.10 263 351 1.3E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 Pfam PF13180 PDZ domain 272 340 2.5E-8 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 SUPERFAMILY SSF50494 52 256 7.28E-50 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 PANTHER PTHR22939:SF79 53 352 3.5E-78 T 23-04-2016 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 Pfam PF13365 Trypsin-like peptidase domain 87 225 6.9E-31 T 23-04-2016 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 PANTHER PTHR22939 53 352 3.5E-78 T 23-04-2016 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 Gene3D G3DSA:2.40.10.10 45 146 3.0E-24 T 23-04-2016 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 SUPERFAMILY SSF50156 260 350 8.54E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS02050 a1743744da125a897e3d79f9ddb68c33 358 Gene3D G3DSA:2.40.10.10 151 262 4.5E-32 T 23-04-2016 NIDE_RS11120 0a88cc5be6575b5721fa3d1b06edc6a6 371 Pfam PF12849 PBP superfamily domain 60 333 2.1E-24 T 23-04-2016 IPR024370 PBP domain NIDE_RS11120 0a88cc5be6575b5721fa3d1b06edc6a6 371 Gene3D G3DSA:3.40.190.10 172 305 1.5E-29 T 23-04-2016 NIDE_RS11120 0a88cc5be6575b5721fa3d1b06edc6a6 371 Gene3D G3DSA:3.40.190.10 68 171 6.1E-6 T 23-04-2016 NIDE_RS11120 0a88cc5be6575b5721fa3d1b06edc6a6 371 SUPERFAMILY SSF53850 61 355 3.15E-51 T 23-04-2016 NIDE_RS11120 0a88cc5be6575b5721fa3d1b06edc6a6 371 PANTHER PTHR30570:SF5 71 354 4.5E-58 T 23-04-2016 NIDE_RS11120 0a88cc5be6575b5721fa3d1b06edc6a6 371 PANTHER PTHR30570 71 354 4.5E-58 T 23-04-2016 NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 SUPERFAMILY SSF53335 149 221 4.55E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 SUPERFAMILY SSF53335 258 372 4.55E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 Pfam PF02926 THUMP domain 39 157 1.6E-8 T 23-04-2016 IPR004114 THUMP domain GO:0003723 NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 Gene3D G3DSA:3.40.50.150 152 218 5.2E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 Gene3D G3DSA:3.40.50.150 255 372 5.2E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 PANTHER PTHR14911 2 216 1.6E-55 T 23-04-2016 NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 PANTHER PTHR14911 255 370 1.6E-55 T 23-04-2016 NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 PANTHER PTHR14911:SF13 2 216 1.6E-55 T 23-04-2016 NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 PANTHER PTHR14911:SF13 255 370 1.6E-55 T 23-04-2016 NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 Pfam PF01170 Putative RNA methylase family UPF0020 166 371 6.7E-53 T 23-04-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 199 210 - T 23-04-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 NIDE_RS08670 9fb2b845c39f01a69fb8f4ba28f9dfb4 389 SMART SM00981 60 158 4.2E-16 T 23-04-2016 IPR004114 THUMP domain GO:0003723 NIDE_RS02965 fe8b7a3dbcd99a0c0e3db92cfc5ccf29 654 PANTHER PTHR11731 247 653 9.4E-75 T 23-04-2016 NIDE_RS02965 fe8b7a3dbcd99a0c0e3db92cfc5ccf29 654 PANTHER PTHR11731:SF140 247 653 9.4E-75 T 23-04-2016 NIDE_RS02965 fe8b7a3dbcd99a0c0e3db92cfc5ccf29 654 SUPERFAMILY SSF53474 401 653 9.2E-57 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS02965 fe8b7a3dbcd99a0c0e3db92cfc5ccf29 654 Gene3D G3DSA:3.40.50.1820 358 653 6.9E-69 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS02965 fe8b7a3dbcd99a0c0e3db92cfc5ccf29 654 Pfam PF00326 Prolyl oligopeptidase family 444 653 2.4E-34 T 23-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 NIDE_RS02965 fe8b7a3dbcd99a0c0e3db92cfc5ccf29 654 Gene3D G3DSA:2.120.10.30 36 125 7.8E-10 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS02965 fe8b7a3dbcd99a0c0e3db92cfc5ccf29 654 Gene3D G3DSA:2.120.10.30 251 357 7.8E-10 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS02965 fe8b7a3dbcd99a0c0e3db92cfc5ccf29 654 Gene3D G3DSA:2.120.10.30 175 197 7.8E-10 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS02965 fe8b7a3dbcd99a0c0e3db92cfc5ccf29 654 SUPERFAMILY SSF82171 36 102 3.14E-9 T 23-04-2016 NIDE_RS02965 fe8b7a3dbcd99a0c0e3db92cfc5ccf29 654 SUPERFAMILY SSF82171 172 383 3.14E-9 T 23-04-2016 NIDE_RS15025 526071dbf0dbf47d2cc3cfa2ba834acb 385 PANTHER PTHR21148 1 367 1.2E-149 T 23-04-2016 NIDE_RS15025 526071dbf0dbf47d2cc3cfa2ba834acb 385 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 2 360 52.534 T 23-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS15025 526071dbf0dbf47d2cc3cfa2ba834acb 385 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 11 366 2.5E-144 T 23-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS15025 526071dbf0dbf47d2cc3cfa2ba834acb 385 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 5 366 6.2E-138 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS15025 526071dbf0dbf47d2cc3cfa2ba834acb 385 SUPERFAMILY SSF51713 1 366 5.36E-142 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS15025 526071dbf0dbf47d2cc3cfa2ba834acb 385 PANTHER PTHR21148:SF26 1 367 1.2E-149 T 23-04-2016 NIDE_RS15025 526071dbf0dbf47d2cc3cfa2ba834acb 385 Pfam PF01702 Queuine tRNA-ribosyltransferase 130 362 2.4E-85 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS15025 526071dbf0dbf47d2cc3cfa2ba834acb 385 Gene3D G3DSA:3.20.20.105 1 366 9.4E-149 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS11085 1299f675b2525a460c7c8ff16436ac73 549 Gene3D G3DSA:1.10.3720.10 288 543 1.3E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS11085 1299f675b2525a460c7c8ff16436ac73 549 PANTHER PTHR30425:SF7 186 547 7.3E-170 T 23-04-2016 NIDE_RS11085 1299f675b2525a460c7c8ff16436ac73 549 SUPERFAMILY SSF161098 281 529 1.15E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS11085 1299f675b2525a460c7c8ff16436ac73 549 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 317 541 1.9E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS11085 1299f675b2525a460c7c8ff16436ac73 549 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 281 541 4.0E-72 T 23-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 NIDE_RS11085 1299f675b2525a460c7c8ff16436ac73 549 PANTHER PTHR30425 186 547 7.3E-170 T 23-04-2016 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 SUPERFAMILY SSF56425 230 345 1.64E-40 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 PANTHER PTHR11632 8 518 1.3E-217 T 23-04-2016 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 Pfam PF00890 FAD binding domain 13 384 1.5E-97 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 12 508 1.5E-162 T 23-04-2016 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 SUPERFAMILY SSF46977 427 531 1.96E-25 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 Gene3D G3DSA:3.50.50.60 8 235 1.4E-97 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 Gene3D G3DSA:3.50.50.60 341 401 1.4E-97 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 PANTHER PTHR11632:SF27 8 518 1.3E-217 T 23-04-2016 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 SUPERFAMILY SSF51905 9 256 2.89E-63 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 SUPERFAMILY SSF51905 348 406 2.89E-63 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 Gene3D G3DSA:1.20.58.100 426 521 7.5E-22 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 Pfam PF02910 Fumarate reductase flavoprotein C-term 432 527 1.6E-11 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 2.6E-7 T 23-04-2016 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 347 369 2.6E-7 T 23-04-2016 NIDE_RS17090 f95bed9258b9b1d583d7b4b675dbb78b 558 Gene3D G3DSA:3.90.700.10 236 340 3.5E-39 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain NIDE_RS09840 99313af8f4b786b5abcb203dec9271bb 214 Pfam PF00550 Phosphopantetheine attachment site 111 174 1.8E-12 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09840 99313af8f4b786b5abcb203dec9271bb 214 SUPERFAMILY SSF56801 29 122 1.27E-20 T 23-04-2016 NIDE_RS09840 99313af8f4b786b5abcb203dec9271bb 214 Gene3D G3DSA:1.10.1200.10 115 180 1.1E-25 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09840 99313af8f4b786b5abcb203dec9271bb 214 SMART SM00823 Phosphopantetheine attachment site 109 178 3.4E-8 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 NIDE_RS09840 99313af8f4b786b5abcb203dec9271bb 214 Pfam PF13193 AMP-binding enzyme C-terminal domain 32 81 9.8E-6 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain NIDE_RS09840 99313af8f4b786b5abcb203dec9271bb 214 PANTHER PTHR24095:SF137 25 205 7.6E-45 T 23-04-2016 NIDE_RS09840 99313af8f4b786b5abcb203dec9271bb 214 SUPERFAMILY SSF47336 104 175 1.27E-19 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS09840 99313af8f4b786b5abcb203dec9271bb 214 PANTHER PTHR24095 25 205 7.6E-45 T 23-04-2016 NIDE_RS09840 99313af8f4b786b5abcb203dec9271bb 214 Gene3D G3DSA:3.30.300.30 25 114 1.1E-25 T 23-04-2016 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 SMART SM00387 546 660 2.7E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 PANTHER PTHR24423:SF497 416 658 2.4E-60 T 23-04-2016 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 PANTHER PTHR24423:SF497 1 7 2.4E-60 T 23-04-2016 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 SUPERFAMILY SSF47384 425 500 3.34E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 608 618 4.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 590 604 4.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 621 639 4.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 644 657 4.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 SMART SM00388 435 504 7.3E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 Pfam PF00512 His Kinase A (phospho-acceptor) domain 436 500 2.7E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 PANTHER PTHR24423 1 7 2.4E-60 T 23-04-2016 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 Gene3D G3DSA:3.30.450.20 126 204 8.4E-4 T 23-04-2016 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 SMART SM00304 348 400 5.8E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 Pfam PF02743 Cache domain 115 310 5.9E-14 T 23-04-2016 IPR033479 Double Cache domain 1 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 PANTHER PTHR24423 416 658 2.4E-60 T 23-04-2016 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 Gene3D G3DSA:1.10.287.130 429 500 3.4E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 SUPERFAMILY SSF55874 494 658 6.94E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 SUPERFAMILY SSF158472 349 397 3.53E-7 T 23-04-2016 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 Pfam PF00672 HAMP domain 329 396 3.3E-13 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 Gene3D G3DSA:3.30.565.10 507 658 8.8E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 546 657 4.9E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS16120 b4a0155677983353e67a0ced23ed1bc6 677 Gene3D G3DSA:3.30.450.20 205 324 5.8E-9 T 23-04-2016 NIDE_RS01630 7e4fa1a7341e1fd162165b0e7802bb2c 253 SUPERFAMILY SSF100950 6 248 2.69E-69 T 23-04-2016 NIDE_RS01630 7e4fa1a7341e1fd162165b0e7802bb2c 253 Gene3D G3DSA:3.40.50.1360 5 247 1.1E-79 T 23-04-2016 NIDE_RS01630 7e4fa1a7341e1fd162165b0e7802bb2c 253 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 10 246 3.0E-65 T 23-04-2016 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 NIDE_RS01630 7e4fa1a7341e1fd162165b0e7802bb2c 253 PANTHER PTHR11054 1 248 1.4E-93 T 23-04-2016 NIDE_RS01630 7e4fa1a7341e1fd162165b0e7802bb2c 253 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 12 237 2.5E-71 T 23-04-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 NIDE_RS18430 0d64d4a491f9234fd0795aedfbaf9dc7 154 SUPERFAMILY SSF46785 11 141 7.32E-35 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS18430 0d64d4a491f9234fd0795aedfbaf9dc7 154 PANTHER PTHR33202:SF7 1 145 9.7E-43 T 23-04-2016 NIDE_RS18430 0d64d4a491f9234fd0795aedfbaf9dc7 154 PANTHER PTHR33202 1 145 9.7E-43 T 23-04-2016 NIDE_RS18430 0d64d4a491f9234fd0795aedfbaf9dc7 154 Pfam PF01475 Ferric uptake regulator family 20 135 9.9E-30 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 NIDE_RS18430 0d64d4a491f9234fd0795aedfbaf9dc7 154 Gene3D G3DSA:1.10.10.10 10 89 1.1E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02335 1f54ea3129da9a2ff7bdc65c29ad5d89 433 SUPERFAMILY SSF52540 49 249 1.25E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02335 1f54ea3129da9a2ff7bdc65c29ad5d89 433 SMART SM00382 64 236 7.0E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS02335 1f54ea3129da9a2ff7bdc65c29ad5d89 433 PANTHER PTHR24220:SF117 34 252 1.3E-105 T 23-04-2016 NIDE_RS02335 1f54ea3129da9a2ff7bdc65c29ad5d89 433 PANTHER PTHR24220 34 252 1.3E-105 T 23-04-2016 NIDE_RS02335 1f54ea3129da9a2ff7bdc65c29ad5d89 433 Gene3D G3DSA:3.40.50.300 51 249 2.7E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02335 1f54ea3129da9a2ff7bdc65c29ad5d89 433 Gene3D G3DSA:3.40.50.300 6 16 2.7E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02335 1f54ea3129da9a2ff7bdc65c29ad5d89 433 Pfam PF14524 Wzt C-terminal domain 266 390 8.7E-15 T 23-04-2016 IPR029439 Wzt, C-terminal NIDE_RS02335 1f54ea3129da9a2ff7bdc65c29ad5d89 433 Pfam PF00005 ABC transporter 55 186 1.7E-20 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS02335 1f54ea3129da9a2ff7bdc65c29ad5d89 433 Gene3D G3DSA:2.70.50.60 267 390 1.6E-4 T 23-04-2016 NIDE_RS12165 387c72f328064464c6b2d4dd8a370342 190 SUPERFAMILY SSF50341 18 144 3.4E-9 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS12165 387c72f328064464c6b2d4dd8a370342 190 Pfam PF01584 CheW-like domain 19 119 1.3E-5 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 NIDE_RS15320 9aadf32e84e445a288678092076ac47e 317 Pfam PF13464 Domain of unknown function (DUF4115) 240 310 1.2E-15 T 23-04-2016 IPR025194 Domain of unknown function DUF4115 NIDE_RS15320 9aadf32e84e445a288678092076ac47e 317 PANTHER PTHR34475 1 317 1.0E-36 T 23-04-2016 NIDE_RS15320 9aadf32e84e445a288678092076ac47e 317 Pfam PF13413 Helix-turn-helix domain 8 67 4.3E-24 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS15320 9aadf32e84e445a288678092076ac47e 317 PANTHER PTHR34475:SF1 1 317 1.0E-36 T 23-04-2016 NIDE_RS15320 9aadf32e84e445a288678092076ac47e 317 Gene3D G3DSA:1.10.260.40 3 68 3.0E-5 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS01765 5e84e8ee7d5a91c9190a4fc219a0cf75 259 Gene3D G3DSA:3.40.50.300 2 235 3.7E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01765 5e84e8ee7d5a91c9190a4fc219a0cf75 259 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS01765 5e84e8ee7d5a91c9190a4fc219a0cf75 259 SUPERFAMILY SSF52540 3 231 7.17E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01765 5e84e8ee7d5a91c9190a4fc219a0cf75 259 Pfam PF00005 ABC transporter 21 170 2.1E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS01765 5e84e8ee7d5a91c9190a4fc219a0cf75 259 PANTHER PTHR24220 7 240 9.2E-76 T 23-04-2016 NIDE_RS01765 5e84e8ee7d5a91c9190a4fc219a0cf75 259 SMART SM00382 30 220 7.0E-20 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS18895 9cbe75263f2d805bbd678f8aec04dcc5 511 PANTHER PTHR12176 266 394 4.5E-25 T 23-04-2016 NIDE_RS18895 9cbe75263f2d805bbd678f8aec04dcc5 511 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 188 475 14.945 T 23-04-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 NIDE_RS18895 9cbe75263f2d805bbd678f8aec04dcc5 511 SUPERFAMILY SSF53335 212 424 8.94E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS18895 9cbe75263f2d805bbd678f8aec04dcc5 511 Gene3D G3DSA:3.40.50.150 225 496 1.3E-60 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS18895 9cbe75263f2d805bbd678f8aec04dcc5 511 Pfam PF01564 Spermine/spermidine synthase 217 390 8.7E-8 T 23-04-2016 NIDE_RS00955 a605b69525eb4415f3c84b3e4a5dad8d 419 PANTHER PTHR10742:SF275 1 414 2.4E-189 T 23-04-2016 NIDE_RS00955 a605b69525eb4415f3c84b3e4a5dad8d 419 Gene3D G3DSA:3.50.50.60 199 303 5.8E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS00955 a605b69525eb4415f3c84b3e4a5dad8d 419 Gene3D G3DSA:3.50.50.60 129 130 5.8E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS00955 a605b69525eb4415f3c84b3e4a5dad8d 419 Gene3D G3DSA:3.50.50.60 2 93 5.8E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS00955 a605b69525eb4415f3c84b3e4a5dad8d 419 SUPERFAMILY SSF51905 383 414 3.11E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS00955 a605b69525eb4415f3c84b3e4a5dad8d 419 SUPERFAMILY SSF51905 1 303 3.11E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS00955 a605b69525eb4415f3c84b3e4a5dad8d 419 Pfam PF01593 Flavin containing amine oxidoreductase 10 290 2.9E-21 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 NIDE_RS00955 a605b69525eb4415f3c84b3e4a5dad8d 419 PANTHER PTHR10742 1 414 2.4E-189 T 23-04-2016 NIDE_RS10335 3dd80611c0ab04f6a766355be04a54fe 78 SUPERFAMILY SSF54909 4 77 1.74E-13 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS10335 3dd80611c0ab04f6a766355be04a54fe 78 Gene3D G3DSA:3.30.70.920 5 77 1.0E-18 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIDE_RS10335 3dd80611c0ab04f6a766355be04a54fe 78 Pfam PF01037 Lrp/AsnC ligand binding domain 7 78 2.0E-12 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIDE_RS08345 70b7f5169c0d0de27391ae28d30adf4b 275 PANTHER PTHR10953 1 259 1.9E-111 T 23-04-2016 NIDE_RS08345 70b7f5169c0d0de27391ae28d30adf4b 275 PANTHER PTHR10953:SF153 1 259 1.9E-111 T 23-04-2016 NIDE_RS08345 70b7f5169c0d0de27391ae28d30adf4b 275 Pfam PF00899 ThiF family 11 246 2.2E-67 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 NIDE_RS08345 70b7f5169c0d0de27391ae28d30adf4b 275 Gene3D G3DSA:3.40.50.720 3 248 5.4E-79 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS08345 70b7f5169c0d0de27391ae28d30adf4b 275 SUPERFAMILY SSF69572 2 260 5.89E-96 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 Pfam PF13646 HEAT repeats 223 305 9.4E-14 T 23-04-2016 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 Pfam PF13646 HEAT repeats 348 428 2.2E-9 T 23-04-2016 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 Pfam PF13646 HEAT repeats 101 174 2.0E-9 T 23-04-2016 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 Pfam PF02985 HEAT repeat 188 212 1.7E-4 T 23-04-2016 IPR000357 HEAT repeat GO:0005515 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 SMART SM00567 E-Z type HEAT repeats 294 323 0.0086 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 SMART SM00567 E-Z type HEAT repeats 232 261 120.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 SMART SM00567 E-Z type HEAT repeats 392 421 0.051 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 SMART SM00567 E-Z type HEAT repeats 139 168 0.28 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 SMART SM00567 E-Z type HEAT repeats 170 199 0.0035 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 SMART SM00567 E-Z type HEAT repeats 201 230 200.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 SMART SM00567 E-Z type HEAT repeats 263 292 2.4E-4 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 SMART SM00567 E-Z type HEAT repeats 358 390 170.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 SMART SM00567 E-Z type HEAT repeats 108 137 7.5 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 Gene3D G3DSA:1.25.10.10 61 239 2.5E-22 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 Gene3D G3DSA:1.25.10.10 240 436 2.8E-34 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 PANTHER PTHR12697 120 340 5.9E-26 T 23-04-2016 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 PANTHER PTHR12697 38 67 5.9E-26 T 23-04-2016 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 PANTHER PTHR12697 373 444 5.9E-26 T 23-04-2016 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 PANTHER PTHR12697:SF18 120 340 5.9E-26 T 23-04-2016 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 PANTHER PTHR12697:SF18 38 67 5.9E-26 T 23-04-2016 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 PANTHER PTHR12697:SF18 373 444 5.9E-26 T 23-04-2016 NIDE_RS15115 92a8492435f000e5f8b30e1ffc4c9cae 449 SUPERFAMILY SSF48371 77 440 6.01E-41 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS07395 0f93b43e78b53f26af6589c5b8625e1e 307 Pfam PF13557 Putative MetA-pathway of phenol degradation 140 307 8.8E-8 T 23-04-2016 IPR025737 MetA-pathway of phenol degradation, putative NIDE_RS04925 7dbadacb5b22bbbcc637461d1f70a5e1 150 PANTHER PTHR23091:SF256 1 144 1.5E-27 T 23-04-2016 NIDE_RS04925 7dbadacb5b22bbbcc637461d1f70a5e1 150 SUPERFAMILY SSF55729 4 145 2.06E-30 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS04925 7dbadacb5b22bbbcc637461d1f70a5e1 150 PANTHER PTHR23091 1 144 1.5E-27 T 23-04-2016 NIDE_RS04925 7dbadacb5b22bbbcc637461d1f70a5e1 150 Pfam PF00583 Acetyltransferase (GNAT) family 57 135 5.1E-10 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS04925 7dbadacb5b22bbbcc637461d1f70a5e1 150 Gene3D G3DSA:3.40.630.30 2 144 7.0E-30 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS07535 28efa5acddde1396bda7fe22aaa58e31 391 Gene3D G3DSA:1.20.1250.20 5 188 7.6E-32 T 23-04-2016 NIDE_RS07535 28efa5acddde1396bda7fe22aaa58e31 391 Gene3D G3DSA:1.20.1250.20 199 388 2.1E-33 T 23-04-2016 NIDE_RS07535 28efa5acddde1396bda7fe22aaa58e31 391 ProSitePatterns PS00216 Sugar transport proteins signature 1. 61 77 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 NIDE_RS07535 28efa5acddde1396bda7fe22aaa58e31 391 PANTHER PTHR23501 5 187 3.8E-44 T 23-04-2016 NIDE_RS07535 28efa5acddde1396bda7fe22aaa58e31 391 PANTHER PTHR23501 205 387 3.8E-44 T 23-04-2016 NIDE_RS07535 28efa5acddde1396bda7fe22aaa58e31 391 SUPERFAMILY SSF103473 6 387 3.14E-69 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS07535 28efa5acddde1396bda7fe22aaa58e31 391 Pfam PF07690 Major Facilitator Superfamily 16 244 1.4E-36 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS19015 cfb324751972f43b9d8ceffcc30a3ad5 362 PANTHER PTHR21266 20 313 1.9E-50 T 23-04-2016 NIDE_RS19015 cfb324751972f43b9d8ceffcc30a3ad5 362 SUPERFAMILY SSF50022 17 131 3.67E-35 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS19015 cfb324751972f43b9d8ceffcc30a3ad5 362 Gene3D G3DSA:2.102.10.10 20 135 2.9E-31 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS19015 cfb324751972f43b9d8ceffcc30a3ad5 362 Pfam PF00355 Rieske [2Fe-2S] domain 21 101 3.9E-20 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS19015 cfb324751972f43b9d8ceffcc30a3ad5 362 SUPERFAMILY SSF55961 123 347 1.46E-21 T 23-04-2016 NIDE_RS19505 fdb43449c190544d7acccd5e2fc22ea6 318 PANTHER PTHR31412 38 317 5.4E-63 T 23-04-2016 NIDE_RS19505 fdb43449c190544d7acccd5e2fc22ea6 318 Pfam PF02163 Peptidase family M50 206 246 1.7E-6 T 23-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 NIDE_RS11525 6c8b678a351b0d0a9331e2f7404a274f 414 SUPERFAMILY SSF103473 8 405 2.35E-73 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS11525 6c8b678a351b0d0a9331e2f7404a274f 414 Pfam PF07690 Major Facilitator Superfamily 18 373 2.0E-55 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS11525 6c8b678a351b0d0a9331e2f7404a274f 414 Gene3D G3DSA:1.20.1250.20 11 208 7.3E-43 T 23-04-2016 NIDE_RS11525 6c8b678a351b0d0a9331e2f7404a274f 414 PANTHER PTHR11662 11 404 5.4E-79 T 23-04-2016 NIDE_RS11525 6c8b678a351b0d0a9331e2f7404a274f 414 Gene3D G3DSA:1.20.1250.20 216 405 6.4E-22 T 23-04-2016 NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 Pfam PF13646 HEAT repeats 69 134 3.2E-15 T 23-04-2016 NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 Pfam PF13646 HEAT repeats 182 261 6.0E-17 T 23-04-2016 NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 SUPERFAMILY SSF48371 50 267 6.97E-33 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 PANTHER PTHR12697 54 251 8.1E-34 T 23-04-2016 NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 PANTHER PTHR12697:SF5 54 251 8.1E-34 T 23-04-2016 NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 Gene3D G3DSA:1.25.10.10 9 269 6.4E-52 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 Pfam PF03130 PBS lyase HEAT-like repeat 137 161 9.3E-4 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 SMART SM00567 E-Z type HEAT repeats 194 223 1.0E-5 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 SMART SM00567 E-Z type HEAT repeats 168 192 790.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 SMART SM00567 E-Z type HEAT repeats 135 164 0.0015 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 SMART SM00567 E-Z type HEAT repeats 76 105 5.0E-9 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 SMART SM00567 E-Z type HEAT repeats 107 134 110.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05945 aa1891e5cc6e1551ddae7da457b7694a 276 SMART SM00567 E-Z type HEAT repeats 225 254 0.0011 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS00875 daa90bf03ff2a8f53f89373a1a53833b 352 PANTHER PTHR23150 74 328 6.2E-65 T 23-04-2016 NIDE_RS00875 daa90bf03ff2a8f53f89373a1a53833b 352 SUPERFAMILY SSF56436 30 292 7.35E-67 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS00875 daa90bf03ff2a8f53f89373a1a53833b 352 Pfam PF03781 Sulfatase-modifying factor enzyme 1 72 292 1.9E-46 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS00875 daa90bf03ff2a8f53f89373a1a53833b 352 Gene3D G3DSA:3.90.1580.10 22 296 1.8E-64 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS11080 19a62e4a804507ce951a72cd749d7626 286 ProSitePatterns PS00211 ABC transporters family signature. 183 197 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS11080 19a62e4a804507ce951a72cd749d7626 286 PANTHER PTHR24220:SF585 41 284 1.5E-140 T 23-04-2016 NIDE_RS11080 19a62e4a804507ce951a72cd749d7626 286 PANTHER PTHR24220 41 284 1.5E-140 T 23-04-2016 NIDE_RS11080 19a62e4a804507ce951a72cd749d7626 286 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 42 286 1.4E-122 T 23-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 NIDE_RS11080 19a62e4a804507ce951a72cd749d7626 286 SUPERFAMILY SSF52540 41 272 1.11E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11080 19a62e4a804507ce951a72cd749d7626 286 Pfam PF00005 ABC transporter 57 210 1.6E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS11080 19a62e4a804507ce951a72cd749d7626 286 Gene3D G3DSA:3.40.50.300 41 280 1.5E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS11080 19a62e4a804507ce951a72cd749d7626 286 SMART SM00382 64 273 1.9E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS14760 fd941a436a59e4c907b9049a3e3e18c4 146 SMART SM00448 6 116 7.6E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14760 fd941a436a59e4c907b9049a3e3e18c4 146 PANTHER PTHR26402 6 121 2.8E-26 T 23-04-2016 NIDE_RS14760 fd941a436a59e4c907b9049a3e3e18c4 146 Gene3D G3DSA:3.40.50.2300 5 122 1.3E-29 T 23-04-2016 NIDE_RS14760 fd941a436a59e4c907b9049a3e3e18c4 146 Pfam PF00072 Response regulator receiver domain 8 116 1.9E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS14760 fd941a436a59e4c907b9049a3e3e18c4 146 SUPERFAMILY SSF52172 5 121 3.56E-29 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS00175 d8a896a4133e19482c46b81924907ace 95 SUPERFAMILY SSF52091 2 70 4.32E-7 T 23-04-2016 IPR002645 STAS domain NIDE_RS00175 d8a896a4133e19482c46b81924907ace 95 Gene3D G3DSA:3.30.750.24 2 68 2.1E-5 T 23-04-2016 IPR002645 STAS domain NIDE_RS12745 1894d0a5ff7558dc5a7d61277761b1b6 309 PANTHER PTHR13774:SF15 5 307 2.1E-83 T 23-04-2016 NIDE_RS12745 1894d0a5ff7558dc5a7d61277761b1b6 309 Gene3D G3DSA:3.10.310.10 6 135 9.2E-40 T 23-04-2016 NIDE_RS12745 1894d0a5ff7558dc5a7d61277761b1b6 309 Pfam PF02567 Phenazine biosynthesis-like protein 13 305 2.5E-73 T 23-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- NIDE_RS12745 1894d0a5ff7558dc5a7d61277761b1b6 309 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 6 307 3.7E-87 T 23-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- NIDE_RS12745 1894d0a5ff7558dc5a7d61277761b1b6 309 PIRSF PIRSF016184 5 309 1.9E-93 T 23-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- NIDE_RS12745 1894d0a5ff7558dc5a7d61277761b1b6 309 Gene3D G3DSA:3.10.310.10 136 290 2.8E-47 T 23-04-2016 NIDE_RS12745 1894d0a5ff7558dc5a7d61277761b1b6 309 PANTHER PTHR13774 5 307 2.1E-83 T 23-04-2016 NIDE_RS12745 1894d0a5ff7558dc5a7d61277761b1b6 309 SUPERFAMILY SSF54506 7 308 4.71E-71 T 23-04-2016 NIDE_RS14640 e9d88e42ca2cec175972417269d62b25 516 PANTHER PTHR30026:SF7 43 502 1.6E-51 T 23-04-2016 NIDE_RS14640 e9d88e42ca2cec175972417269d62b25 516 Gene3D G3DSA:1.20.1600.10 155 502 2.8E-66 T 23-04-2016 NIDE_RS14640 e9d88e42ca2cec175972417269d62b25 516 Gene3D G3DSA:1.20.1600.10 42 122 2.8E-66 T 23-04-2016 NIDE_RS14640 e9d88e42ca2cec175972417269d62b25 516 PANTHER PTHR30026 43 502 1.6E-51 T 23-04-2016 NIDE_RS14640 e9d88e42ca2cec175972417269d62b25 516 SUPERFAMILY SSF56954 36 96 3.66E-67 T 23-04-2016 NIDE_RS14640 e9d88e42ca2cec175972417269d62b25 516 SUPERFAMILY SSF56954 151 502 3.66E-67 T 23-04-2016 NIDE_RS14640 e9d88e42ca2cec175972417269d62b25 516 Pfam PF02321 Outer membrane efflux protein 314 502 1.1E-26 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS14640 e9d88e42ca2cec175972417269d62b25 516 Pfam PF02321 Outer membrane efflux protein 45 287 9.3E-23 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS11685 aa57355088a25f9e2418de5a6f9efa69 263 PANTHER PTHR35092 1 263 2.5E-97 T 23-04-2016 NIDE_RS11685 aa57355088a25f9e2418de5a6f9efa69 263 PANTHER PTHR35092:SF1 1 263 2.5E-97 T 23-04-2016 NIDE_RS11685 aa57355088a25f9e2418de5a6f9efa69 263 SUPERFAMILY SSF101852 163 262 2.22E-15 T 23-04-2016 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal NIDE_RS11685 aa57355088a25f9e2418de5a6f9efa69 263 Gene3D G3DSA:2.40.30.90 162 262 8.0E-17 T 23-04-2016 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal NIDE_RS11685 aa57355088a25f9e2418de5a6f9efa69 263 SUPERFAMILY SSF102522 3 158 1.27E-58 T 23-04-2016 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal NIDE_RS11685 aa57355088a25f9e2418de5a6f9efa69 263 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 5 260 7.7E-77 T 23-04-2016 IPR002747 SAM-dependent chlorinase/fluorinase NIDE_RS11685 aa57355088a25f9e2418de5a6f9efa69 263 PIRSF PIRSF006779 1 263 1.3E-77 T 23-04-2016 IPR002747 SAM-dependent chlorinase/fluorinase NIDE_RS02260 a9cc8ee151a0cdd9a7a310f5c66fd5d0 215 Hamap MF_00494 Probable transaldolase [tal]. 1 214 45.76 T 23-04-2016 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 NIDE_RS02260 a9cc8ee151a0cdd9a7a310f5c66fd5d0 215 Gene3D G3DSA:3.20.20.70 1 212 8.6E-71 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS02260 a9cc8ee151a0cdd9a7a310f5c66fd5d0 215 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 211 3.5E-94 T 23-04-2016 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 NIDE_RS02260 a9cc8ee151a0cdd9a7a310f5c66fd5d0 215 PANTHER PTHR10683 1 212 1.5E-85 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 NIDE_RS02260 a9cc8ee151a0cdd9a7a310f5c66fd5d0 215 SUPERFAMILY SSF51569 1 212 3.14E-78 T 23-04-2016 NIDE_RS02260 a9cc8ee151a0cdd9a7a310f5c66fd5d0 215 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 23-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 NIDE_RS02260 a9cc8ee151a0cdd9a7a310f5c66fd5d0 215 Pfam PF00923 Transaldolase 3 199 1.1E-58 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 SUPERFAMILY SSF47928 3 106 3.14E-18 T 23-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 Pfam PF00213 ATP synthase delta (OSCP) subunit 6 175 7.6E-37 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 6 176 5.7E-28 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 Hamap MF_01416 ATP synthase subunit delta [atpD]. 2 178 16.898 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 PRINTS PR00125 ATP synthase delta subunit signature 6 25 5.7E-19 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 PRINTS PR00125 ATP synthase delta subunit signature 136 151 5.7E-19 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 PRINTS PR00125 ATP synthase delta subunit signature 86 100 5.7E-19 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 PRINTS PR00125 ATP synthase delta subunit signature 75 86 5.7E-19 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 PRINTS PR00125 ATP synthase delta subunit signature 151 169 5.7E-19 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 PANTHER PTHR11910 5 176 1.2E-35 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 NIDE_RS01695 a5294f61be727fb3553b689657c32425 179 Gene3D G3DSA:1.10.520.20 4 106 7.8E-19 T 23-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain NIDE_RS15675 98ab577281d5f6457009c4f44383a6c2 391 Gene3D G3DSA:3.40.50.150 107 250 6.0E-12 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS15675 98ab577281d5f6457009c4f44383a6c2 391 SUPERFAMILY SSF53335 84 266 8.95E-16 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02250 4f93ea7b13f68c7a698e547188a49bce 86 SMART SM00746 47 84 5.9E-4 T 23-04-2016 IPR011017 TRASH domain NIDE_RS02250 4f93ea7b13f68c7a698e547188a49bce 86 Pfam PF04945 YHS domain 45 82 1.0E-7 T 23-04-2016 IPR007029 YHS domain NIDE_RS02250 4f93ea7b13f68c7a698e547188a49bce 86 SUPERFAMILY SSF47240 35 82 9.73E-5 T 23-04-2016 IPR009078 Ferritin-like superfamily NIDE_RS14375 926f0a5dd7d4abcb5314f90a7da0aa39 712 Pfam PF13533 Biotin-lipoyl like 460 504 1.9E-8 T 23-04-2016 NIDE_RS14375 926f0a5dd7d4abcb5314f90a7da0aa39 712 SUPERFAMILY SSF111369 447 572 8.24E-8 T 23-04-2016 NIDE_RS14375 926f0a5dd7d4abcb5314f90a7da0aa39 712 Gene3D G3DSA:2.40.50.100 548 561 1.7E-8 T 23-04-2016 NIDE_RS14375 926f0a5dd7d4abcb5314f90a7da0aa39 712 Gene3D G3DSA:2.40.50.100 459 491 1.7E-8 T 23-04-2016 NIDE_RS14375 926f0a5dd7d4abcb5314f90a7da0aa39 712 Pfam PF13437 HlyD family secretion protein 551 642 2.1E-9 T 23-04-2016 NIDE_RS14375 926f0a5dd7d4abcb5314f90a7da0aa39 712 PANTHER PTHR13325:SF4 132 559 5.6E-45 T 23-04-2016 NIDE_RS14375 926f0a5dd7d4abcb5314f90a7da0aa39 712 PANTHER PTHR13325 132 559 5.6E-45 T 23-04-2016 IPR001193 Membrane-bound transcription factor site-2 protease GO:0004222|GO:0006508|GO:0016020 NIDE_RS04990 5c7ed8099d924d1d6f8fca48403572eb 424 SUPERFAMILY SSF111369 48 296 3.53E-26 T 23-04-2016 NIDE_RS04990 5c7ed8099d924d1d6f8fca48403572eb 424 Gene3D G3DSA:2.40.50.100 180 210 7.7E-14 T 23-04-2016 NIDE_RS04990 5c7ed8099d924d1d6f8fca48403572eb 424 Gene3D G3DSA:2.40.50.100 58 91 7.7E-14 T 23-04-2016 NIDE_RS04990 5c7ed8099d924d1d6f8fca48403572eb 424 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 51 292 1.6E-20 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS04990 5c7ed8099d924d1d6f8fca48403572eb 424 PANTHER PTHR30572:SF1 2 395 2.5E-99 T 23-04-2016 NIDE_RS04990 5c7ed8099d924d1d6f8fca48403572eb 424 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 313 9.8E-46 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS04990 5c7ed8099d924d1d6f8fca48403572eb 424 PANTHER PTHR30572 2 395 2.5E-99 T 23-04-2016 NIDE_RS09020 ff817a5e41fc42aff1e4cd9aaea1f965 1209 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 25 1205 1.1E-254 T 23-04-2016 IPR017731 Type VI secretion system, IcmF NIDE_RS09020 ff817a5e41fc42aff1e4cd9aaea1f965 1209 PANTHER PTHR36153:SF1 3 1209 8.3E-177 T 23-04-2016 NIDE_RS09020 ff817a5e41fc42aff1e4cd9aaea1f965 1209 Pfam PF14331 ImcF-related N-terminal domain 197 453 1.3E-89 T 23-04-2016 IPR025743 ImcF-related, N-terminal domain NIDE_RS09020 ff817a5e41fc42aff1e4cd9aaea1f965 1209 Pfam PF06744 Type VI secretion protein IcmF C-terminal 949 1150 9.6E-47 T 23-04-2016 IPR010623 Type VI secretion system IcmF, C-terminal NIDE_RS09020 ff817a5e41fc42aff1e4cd9aaea1f965 1209 SUPERFAMILY SSF52540 132 307 8.43E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09020 ff817a5e41fc42aff1e4cd9aaea1f965 1209 Pfam PF06761 Intracellular multiplication and human macrophage-killing 502 809 5.6E-62 T 23-04-2016 IPR009612 ImcF-related NIDE_RS09020 ff817a5e41fc42aff1e4cd9aaea1f965 1209 PANTHER PTHR36153 3 1209 8.3E-177 T 23-04-2016 NIDE_RS00665 126757e8d4267e132bb3e4338b94133f 187 SUPERFAMILY SSF50814 4 185 2.35E-28 T 23-04-2016 IPR011038 Calycin-like NIDE_RS00665 126757e8d4267e132bb3e4338b94133f 187 Pfam PF08768 Domain of unknown function (DUF1794) 9 185 4.9E-20 T 23-04-2016 IPR014878 Domain of unknown function DUF1794 NIDE_RS03385 8617f9501e19f47e7aa50e2d0f3eae54 403 PANTHER PTHR12526 1 383 1.7E-66 T 23-04-2016 NIDE_RS03385 8617f9501e19f47e7aa50e2d0f3eae54 403 Pfam PF00534 Glycosyl transferases group 1 194 354 5.8E-42 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS03385 8617f9501e19f47e7aa50e2d0f3eae54 403 Pfam PF13439 Glycosyltransferase Family 4 11 186 1.4E-12 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS03385 8617f9501e19f47e7aa50e2d0f3eae54 403 Gene3D G3DSA:3.40.50.2000 179 354 1.5E-36 T 23-04-2016 NIDE_RS03385 8617f9501e19f47e7aa50e2d0f3eae54 403 SUPERFAMILY SSF53756 6 376 1.32E-82 T 23-04-2016 NIDE_RS01190 3a56d3b933bfdf8bce7d92ed7c4623a2 174 Pfam PF07238 PilZ domain 60 162 4.1E-11 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS19150 ea3974eab3103f1b69751a2dadcd2338 168 Pfam PF11304 Protein of unknown function (DUF3106) 29 132 1.4E-30 T 23-04-2016 IPR021455 Protein of unknown function DUF3106 NIDE_RS19150 ea3974eab3103f1b69751a2dadcd2338 168 Gene3D G3DSA:1.10.3680.10 66 130 6.9E-4 T 23-04-2016 IPR029024 TerB-like NIDE_RS19150 ea3974eab3103f1b69751a2dadcd2338 168 SUPERFAMILY SSF158791 73 149 3.14E-5 T 23-04-2016 NIDE_RS18860 cf5ddab962bf305e62817586d058c76c 279 PANTHER PTHR11825 4 275 3.9E-93 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS18860 cf5ddab962bf305e62817586d058c76c 279 Gene3D G3DSA:3.30.470.10 4 117 1.9E-34 T 23-04-2016 NIDE_RS18860 cf5ddab962bf305e62817586d058c76c 279 SUPERFAMILY SSF56752 3 275 5.49E-78 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS18860 cf5ddab962bf305e62817586d058c76c 279 Gene3D G3DSA:3.20.10.10 127 277 1.2E-48 T 23-04-2016 NIDE_RS18860 cf5ddab962bf305e62817586d058c76c 279 TIGRFAM TIGR01121 D_amino_aminoT: D-amino-acid transaminase 6 276 5.3E-88 T 23-04-2016 IPR005784 D-amino acid aminotransferase GO:0008483|GO:0030170|GO:0046416 KEGG: 00310+2.6.1.21|KEGG: 00330+2.6.1.21|KEGG: 00360+2.6.1.21|KEGG: 00472+2.6.1.21|KEGG: 00473+2.6.1.21 NIDE_RS18860 cf5ddab962bf305e62817586d058c76c 279 PANTHER PTHR11825:SF38 4 275 3.9E-93 T 23-04-2016 NIDE_RS18860 cf5ddab962bf305e62817586d058c76c 279 Pfam PF01063 Amino-transferase class IV 31 252 8.2E-49 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS12725 e15d2cf7a63521ab0e95fe7fafb11c0e 108 PANTHER PTHR11780:SF12 5 97 1.9E-18 T 23-04-2016 NIDE_RS12725 e15d2cf7a63521ab0e95fe7fafb11c0e 108 SUPERFAMILY SSF52833 4 101 5.14E-26 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS12725 e15d2cf7a63521ab0e95fe7fafb11c0e 108 Gene3D G3DSA:3.40.30.10 4 101 1.2E-31 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS12725 e15d2cf7a63521ab0e95fe7fafb11c0e 108 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 2 90 6.4E-6 T 23-04-2016 NIDE_RS12725 e15d2cf7a63521ab0e95fe7fafb11c0e 108 PANTHER PTHR11780 5 97 1.9E-18 T 23-04-2016 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 Gene3D G3DSA:3.90.110.10 145 307 4.0E-56 T 23-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 3 306 2.9E-126 T 23-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 PANTHER PTHR11540:SF16 3 301 4.5E-119 T 23-04-2016 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 PANTHER PTHR11540 3 301 4.5E-119 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 PIRSF PIRSF000102 1 310 1.4E-95 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 SUPERFAMILY SSF51735 5 144 2.32E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 Gene3D G3DSA:3.40.50.720 3 144 1.1E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 Hamap MF_00487 Malate dehydrogenase [mdh]. 4 308 39.566 T 23-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 SUPERFAMILY SSF56327 145 305 1.34E-51 T 23-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 143 6.8E-35 T 23-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 PRINTS PR00086 L-lactate dehydrogenase signature 29 53 3.1E-28 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 PRINTS PR00086 L-lactate dehydrogenase signature 171 184 3.1E-28 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 PRINTS PR00086 L-lactate dehydrogenase signature 117 137 3.1E-28 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 PRINTS PR00086 L-lactate dehydrogenase signature 141 159 3.1E-28 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 PRINTS PR00086 L-lactate dehydrogenase signature 5 29 3.1E-28 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 NIDE_RS16300 f11b87d3e6c65d17460a98b47215b183 313 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 301 1.9E-26 T 23-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 NIDE_RS17240 61402cfdec434836936540730a698ac5 193 PANTHER PTHR11080:SF2 9 184 8.3E-60 T 23-04-2016 NIDE_RS17240 61402cfdec434836936540730a698ac5 193 SUPERFAMILY SSF52499 8 191 9.55E-54 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 NIDE_RS17240 61402cfdec434836936540730a698ac5 193 Pfam PF00857 Isochorismatase family 9 186 2.0E-35 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 NIDE_RS17240 61402cfdec434836936540730a698ac5 193 Gene3D G3DSA:3.40.50.850 8 188 1.6E-56 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 NIDE_RS17240 61402cfdec434836936540730a698ac5 193 PANTHER PTHR11080 9 184 8.3E-60 T 23-04-2016 NIDE_RS09580 91cf0f91084db7d279dea6b6f79cf39c 254 PANTHER PTHR10882:SF1 5 157 1.0E-28 T 23-04-2016 NIDE_RS09580 91cf0f91084db7d279dea6b6f79cf39c 254 PANTHER PTHR10882 5 157 1.0E-28 T 23-04-2016 NIDE_RS09580 91cf0f91084db7d279dea6b6f79cf39c 254 Gene3D G3DSA:3.40.1010.10 4 133 3.2E-32 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 NIDE_RS09580 91cf0f91084db7d279dea6b6f79cf39c 254 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 5 235 5.4E-71 T 23-04-2016 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 NIDE_RS09580 91cf0f91084db7d279dea6b6f79cf39c 254 SUPERFAMILY SSF53790 2 236 1.96E-45 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS09580 91cf0f91084db7d279dea6b6f79cf39c 254 PIRSF PIRSF036427 2 242 1.4E-72 T 23-04-2016 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 NIDE_RS09580 91cf0f91084db7d279dea6b6f79cf39c 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 216 2.0E-50 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS00690 10e0049e679563827ed7151266b24f09 161 SMART SM00506 1 135 0.0037 T 23-04-2016 IPR002589 Macro domain NIDE_RS00690 10e0049e679563827ed7151266b24f09 161 Pfam PF01661 Macro domain 28 132 3.4E-7 T 23-04-2016 IPR002589 Macro domain NIDE_RS00690 10e0049e679563827ed7151266b24f09 161 SUPERFAMILY SSF52949 1 150 6.56E-35 T 23-04-2016 NIDE_RS00690 10e0049e679563827ed7151266b24f09 161 Gene3D G3DSA:3.40.220.10 4 141 5.8E-5 T 23-04-2016 NIDE_RS00690 10e0049e679563827ed7151266b24f09 161 PANTHER PTHR12521 1 160 5.9E-29 T 23-04-2016 NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 PANTHER PTHR11851 161 514 8.2E-110 T 23-04-2016 NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 PANTHER PTHR11851 29 94 8.2E-110 T 23-04-2016 NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 Pfam PF00675 Insulinase (Peptidase family M16) 38 92 9.6E-9 T 23-04-2016 IPR011765 Peptidase M16, N-terminal NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 SUPERFAMILY SSF63411 326 504 1.26E-36 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 Gene3D G3DSA:3.30.830.10 150 309 5.6E-49 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 Gene3D G3DSA:3.30.830.10 27 86 5.6E-49 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 SUPERFAMILY SSF63411 153 304 2.72E-46 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 Pfam PF05193 Peptidase M16 inactive domain 255 433 6.4E-32 T 23-04-2016 IPR007863 Peptidase M16, C-terminal NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 SUPERFAMILY SSF63411 27 89 2.72E-46 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 Gene3D G3DSA:3.30.830.10 328 496 4.1E-27 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 PANTHER PTHR11851:SF136 161 514 8.2E-110 T 23-04-2016 NIDE_RS19520 bc04734afa0b335cdc8595f583a0c9d0 514 PANTHER PTHR11851:SF136 29 94 8.2E-110 T 23-04-2016 NIDE_RS17160 75ef60918927dc7c4eac2d5863c3cc87 382 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 371 2.5E-58 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS17160 75ef60918927dc7c4eac2d5863c3cc87 382 Gene3D G3DSA:2.40.50.100 74 106 7.5E-13 T 23-04-2016 NIDE_RS17160 75ef60918927dc7c4eac2d5863c3cc87 382 Gene3D G3DSA:2.40.50.100 190 221 7.5E-13 T 23-04-2016 NIDE_RS17160 75ef60918927dc7c4eac2d5863c3cc87 382 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 296 5.4E-60 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS17160 75ef60918927dc7c4eac2d5863c3cc87 382 SUPERFAMILY SSF111369 60 300 1.44E-24 T 23-04-2016 NIDE_RS17160 75ef60918927dc7c4eac2d5863c3cc87 382 PANTHER PTHR30097 30 372 2.2E-82 T 23-04-2016 NIDE_RS17160 75ef60918927dc7c4eac2d5863c3cc87 382 PANTHER PTHR30097:SF4 30 372 2.2E-82 T 23-04-2016 NIDE_RS14145 36ecfdcae7dcd0cd27cee95ad25ae8d8 159 Gene3D G3DSA:3.10.50.40 123 141 1.8E-21 T 23-04-2016 NIDE_RS14145 36ecfdcae7dcd0cd27cee95ad25ae8d8 159 Gene3D G3DSA:3.10.50.40 4 70 1.8E-21 T 23-04-2016 NIDE_RS14145 36ecfdcae7dcd0cd27cee95ad25ae8d8 159 SUPERFAMILY SSF54534 4 140 7.86E-33 T 23-04-2016 NIDE_RS14145 36ecfdcae7dcd0cd27cee95ad25ae8d8 159 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 99 9.8E-14 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 201 5.1E-38 T 23-04-2016 NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 ProSitePatterns PS00548 Ribosomal protein S3 signature. 162 196 - T 23-04-2016 IPR018280 Ribosomal protein S3, conserved site NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 205 38.244 T 23-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 SUPERFAMILY SSF54814 2 105 9.94E-35 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 Gene3D G3DSA:3.30.1140.32 107 205 1.0E-42 T 23-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 Gene3D G3DSA:3.30.300.20 17 106 5.4E-31 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 SMART SM00322 59 124 0.0014 T 23-04-2016 IPR004087 K Homology domain GO:0003676 NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 SUPERFAMILY SSF54821 106 205 1.02E-37 T 23-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 PANTHER PTHR11760 2 213 1.3E-124 T 23-04-2016 NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 Pfam PF07650 KH domain 37 110 1.9E-18 T 23-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 207 8.8E-90 T 23-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 NIDE_RS06100 f7bd333bc52c9ea8b605e52866bb44af 222 PANTHER PTHR11760:SF19 2 213 1.3E-124 T 23-04-2016 NIDE_RS09075 a82f936ee84dfe8b74d76962e23dda0f 272 PANTHER PTHR35564 1 250 1.0E-68 T 23-04-2016 NIDE_RS09075 a82f936ee84dfe8b74d76962e23dda0f 272 Pfam PF06996 Type VI secretion, VasB, ImpH, VC_A0111 1 247 1.3E-88 T 23-04-2016 IPR010732 Type VI secretion, TssG-like NIDE_RS09075 a82f936ee84dfe8b74d76962e23dda0f 272 PANTHER PTHR35564:SF2 1 250 1.0E-68 T 23-04-2016 NIDE_RS09075 a82f936ee84dfe8b74d76962e23dda0f 272 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 1 247 9.3E-88 T 23-04-2016 IPR010732 Type VI secretion, TssG-like NIDE_RS04995 df1aac791fa6ddff591da086f76011c6 236 SMART SM00382 33 221 3.1E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS04995 df1aac791fa6ddff591da086f76011c6 236 PANTHER PTHR24220 6 228 1.3E-117 T 23-04-2016 NIDE_RS04995 df1aac791fa6ddff591da086f76011c6 236 Pfam PF00005 ABC transporter 24 172 7.5E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS04995 df1aac791fa6ddff591da086f76011c6 236 Gene3D G3DSA:3.40.50.300 3 225 2.3E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04995 df1aac791fa6ddff591da086f76011c6 236 PANTHER PTHR24220:SF578 6 228 1.3E-117 T 23-04-2016 NIDE_RS04995 df1aac791fa6ddff591da086f76011c6 236 SUPERFAMILY SSF52540 4 225 1.3E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04995 df1aac791fa6ddff591da086f76011c6 236 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 Gene3D G3DSA:3.10.150.10 1 121 7.0E-30 T 23-04-2016 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 Gene3D G3DSA:3.10.150.10 258 376 2.4E-34 T 23-04-2016 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 PIRSF PIRSF000804 1 376 1.9E-117 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 2.0E-30 T 23-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 SUPERFAMILY SSF55979 1 116 4.03E-27 T 23-04-2016 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 SUPERFAMILY SSF55979 133 254 2.9E-19 T 23-04-2016 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 SUPERFAMILY SSF55979 255 376 2.77E-33 T 23-04-2016 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 SMART SM00480 17 372 8.9E-102 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 375 3.6E-92 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 PANTHER PTHR30478 2 376 2.1E-118 T 23-04-2016 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 256 374 3.2E-31 T 23-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 Pfam PF02767 DNA polymerase III beta subunit, central domain 133 253 5.7E-22 T 23-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 NIDE_RS00010 4d34271e7481d9839371cf51ff17e813 376 Gene3D G3DSA:3.10.150.10 132 257 2.0E-26 T 23-04-2016 NIDE_RS06870 f4bba6f3d54dfbf05ba5badd83ba44b8 103 Pfam PF11154 Protein of unknown function (DUF2934) 52 81 4.6E-12 T 23-04-2016 IPR021327 Protein of unknown function DUF2934 NIDE_RS03810 340c50c7557140925de25ef6d085a59f 401 Gene3D G3DSA:3.40.50.150 88 230 1.4E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS03810 340c50c7557140925de25ef6d085a59f 401 SUPERFAMILY SSF53335 71 248 5.68E-11 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS03810 340c50c7557140925de25ef6d085a59f 401 Pfam PF09243 Mitochondrial small ribosomal subunit Rsm22 62 343 1.0E-20 T 23-04-2016 IPR015324 Ribosomal protein Rsm22, bacterial-type GO:0006412|GO:0008168 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- NIDE_RS17640 98cde05e3a7853ce54afdded3638c4cc 128 Gene3D G3DSA:1.10.780.10 66 120 1.4E-4 T 23-04-2016 NIDE_RS17640 98cde05e3a7853ce54afdded3638c4cc 128 SUPERFAMILY SSF48695 66 128 7.04E-7 T 23-04-2016 IPR011031 Multihaem cytochrome NIDE_RS12730 4179cdfbfd3d54fcda40fae9a6d1105c 151 Gene3D G3DSA:3.40.980.10 2 149 2.4E-42 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS12730 4179cdfbfd3d54fcda40fae9a6d1105c 151 PANTHER PTHR10192:SF18 2 149 8.8E-64 T 23-04-2016 NIDE_RS12730 4179cdfbfd3d54fcda40fae9a6d1105c 151 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 140 3.9E-32 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS12730 4179cdfbfd3d54fcda40fae9a6d1105c 151 SMART SM00852 1 145 5.5E-25 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS12730 4179cdfbfd3d54fcda40fae9a6d1105c 151 Pfam PF00994 Probable molybdopterin binding domain 2 144 7.7E-30 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS12730 4179cdfbfd3d54fcda40fae9a6d1105c 151 PIRSF PIRSF006443 1 151 4.1E-59 T 23-04-2016 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 UniPathway: UPA00344 NIDE_RS12730 4179cdfbfd3d54fcda40fae9a6d1105c 151 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 59 72 - T 23-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 NIDE_RS12730 4179cdfbfd3d54fcda40fae9a6d1105c 151 SUPERFAMILY SSF53218 2 148 9.42E-38 T 23-04-2016 IPR001453 MoaB/Mog domain NIDE_RS12730 4179cdfbfd3d54fcda40fae9a6d1105c 151 PANTHER PTHR10192 2 149 8.8E-64 T 23-04-2016 NIDE_RS08325 cb3be881883fc0f4f579d01d77233020 267 PANTHER PTHR10953:SF153 1 267 1.2E-104 T 23-04-2016 NIDE_RS08325 cb3be881883fc0f4f579d01d77233020 267 Gene3D G3DSA:3.40.50.720 3 249 5.0E-74 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS08325 cb3be881883fc0f4f579d01d77233020 267 Pfam PF00899 ThiF family 11 245 5.3E-62 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 NIDE_RS08325 cb3be881883fc0f4f579d01d77233020 267 SUPERFAMILY SSF69572 2 256 2.35E-90 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 NIDE_RS08325 cb3be881883fc0f4f579d01d77233020 267 PANTHER PTHR10953 1 267 1.2E-104 T 23-04-2016 NIDE_RS19140 5d2bf3d2881a61a84fc99f940899306f 278 Gene3D G3DSA:1.10.3150.10 7 274 1.3E-81 T 23-04-2016 IPR013976 Metal-dependent hydrolase HDOD NIDE_RS19140 5d2bf3d2881a61a84fc99f940899306f 278 PANTHER PTHR33525 8 278 2.7E-65 T 23-04-2016 NIDE_RS19140 5d2bf3d2881a61a84fc99f940899306f 278 PANTHER PTHR33525:SF3 8 278 2.7E-65 T 23-04-2016 NIDE_RS19140 5d2bf3d2881a61a84fc99f940899306f 278 Pfam PF08668 HDOD domain 19 209 6.5E-61 T 23-04-2016 IPR013976 Metal-dependent hydrolase HDOD NIDE_RS19140 5d2bf3d2881a61a84fc99f940899306f 278 SUPERFAMILY SSF109604 8 273 1.82E-71 T 23-04-2016 NIDE_RS19140 5d2bf3d2881a61a84fc99f940899306f 278 SMART SM00471 104 240 1.7E-5 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS21010 9e5d0d2b4704de4a33f2d1233a2e1fc0 139 Gene3D G3DSA:3.30.1460.30 20 115 7.4E-27 T 23-04-2016 IPR007076 TfoX, N-terminal NIDE_RS21010 9e5d0d2b4704de4a33f2d1233a2e1fc0 139 SUPERFAMILY SSF159894 21 115 8.37E-24 T 23-04-2016 NIDE_RS21010 9e5d0d2b4704de4a33f2d1233a2e1fc0 139 Pfam PF04993 TfoX N-terminal domain 28 115 8.7E-25 T 23-04-2016 IPR007076 TfoX, N-terminal NIDE_RS11010 75eb526afa364d36d05a6bb055cd9caf 514 TIGRFAM TIGR04152 exosort_VPLPA: exosortase D, VPLPA-CTERM-specific 24 513 2.6E-161 T 23-04-2016 IPR026491 Exosortase D, VPLPA-CTERM-specific NIDE_RS11010 75eb526afa364d36d05a6bb055cd9caf 514 TIGRFAM TIGR02602 8TM_EpsH: exosortase 27 258 3.7E-56 T 23-04-2016 IPR013426 Exosortase, EpsH NIDE_RS11010 75eb526afa364d36d05a6bb055cd9caf 514 Pfam PF11984 Protein of unknown function (DUF3485) 312 511 8.0E-54 T 23-04-2016 IPR014263 Methanolan biosynthesis EpsI NIDE_RS11010 75eb526afa364d36d05a6bb055cd9caf 514 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 169 263 5.4E-23 T 23-04-2016 IPR026392 Exosortase/Archaeosortase domain NIDE_RS11010 75eb526afa364d36d05a6bb055cd9caf 514 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 10 261 3.1E-65 T 23-04-2016 IPR019127 Exosortase EpsH-related KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- NIDE_RS11010 75eb526afa364d36d05a6bb055cd9caf 514 TIGRFAM TIGR02914 EpsI_fam: EpsI family protein 340 511 8.2E-43 T 23-04-2016 IPR014263 Methanolan biosynthesis EpsI NIDE_RS01515 7a5e2e37691803ec6151be7b44fb2fbb 172 Gene3D G3DSA:3.40.630.30 5 97 8.1E-27 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS01515 7a5e2e37691803ec6151be7b44fb2fbb 172 Gene3D G3DSA:3.40.630.30 98 147 8.8E-10 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS01515 7a5e2e37691803ec6151be7b44fb2fbb 172 Pfam PF00583 Acetyltransferase (GNAT) family 74 147 1.7E-9 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS01515 7a5e2e37691803ec6151be7b44fb2fbb 172 SUPERFAMILY SSF55729 7 147 1.89E-20 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS08815 6e407f4cda1c4ed235375e6c8d3d9317 166 PRINTS PR01438 Universal stress protein signature 6 24 1.1E-12 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS08815 6e407f4cda1c4ed235375e6c8d3d9317 166 PRINTS PR01438 Universal stress protein signature 130 152 1.1E-12 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS08815 6e407f4cda1c4ed235375e6c8d3d9317 166 SUPERFAMILY SSF52402 6 157 3.18E-35 T 23-04-2016 NIDE_RS08815 6e407f4cda1c4ed235375e6c8d3d9317 166 PANTHER PTHR31964 3 162 3.5E-30 T 23-04-2016 NIDE_RS08815 6e407f4cda1c4ed235375e6c8d3d9317 166 PANTHER PTHR31964:SF45 3 162 3.5E-30 T 23-04-2016 NIDE_RS08815 6e407f4cda1c4ed235375e6c8d3d9317 166 Gene3D G3DSA:3.40.50.620 6 154 1.6E-36 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS08815 6e407f4cda1c4ed235375e6c8d3d9317 166 Pfam PF00582 Universal stress protein family 6 152 9.0E-33 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS10455 e602bec86d66c4f567146e7f7bcb849a 103 PANTHER PTHR34653 28 103 1.1E-19 T 23-04-2016 NIDE_RS10455 e602bec86d66c4f567146e7f7bcb849a 103 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 4 103 17.293 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NIDE_RS10455 e602bec86d66c4f567146e7f7bcb849a 103 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 32 103 1.2E-21 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NIDE_RS10455 e602bec86d66c4f567146e7f7bcb849a 103 Pfam PF02049 Flagellar hook-basal body complex protein FliE 25 103 2.3E-26 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NIDE_RS10455 e602bec86d66c4f567146e7f7bcb849a 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 33 49 5.5E-13 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NIDE_RS10455 e602bec86d66c4f567146e7f7bcb849a 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 88 101 5.5E-13 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NIDE_RS10455 e602bec86d66c4f567146e7f7bcb849a 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 67 83 5.5E-13 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 NIDE_RS17180 966fa37c75e66346a6abe5668af47fe2 694 Gene3D G3DSA:3.40.630.30 14 125 4.2E-12 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS17180 966fa37c75e66346a6abe5668af47fe2 694 SUPERFAMILY SSF88723 163 284 5.1E-6 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS17180 966fa37c75e66346a6abe5668af47fe2 694 SUPERFAMILY SSF55729 10 128 1.38E-12 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS17180 966fa37c75e66346a6abe5668af47fe2 694 Pfam PF13673 Acetyltransferase (GNAT) domain 39 127 3.8E-6 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS01090 4b856d8baa3367933fa291cb5f0d15ea 741 PANTHER PTHR30580 1 645 2.7E-121 T 23-04-2016 NIDE_RS01090 4b856d8baa3367933fa291cb5f0d15ea 741 PANTHER PTHR30580 672 741 2.7E-121 T 23-04-2016 NIDE_RS01090 4b856d8baa3367933fa291cb5f0d15ea 741 SUPERFAMILY SSF52540 221 352 2.66E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01090 4b856d8baa3367933fa291cb5f0d15ea 741 Hamap MF_00983 Probable primosomal protein N' [priA]. 3 740 17.619 T 23-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 NIDE_RS01090 4b856d8baa3367933fa291cb5f0d15ea 741 Gene3D G3DSA:3.40.50.300 219 359 5.0E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01090 4b856d8baa3367933fa291cb5f0d15ea 741 TIGRFAM TIGR00595 priA: primosomal protein N' 219 646 4.2E-101 T 23-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 Pfam PF00263 Bacterial type II and III secretion system protein 505 661 1.3E-43 T 23-04-2016 IPR004846 Type II/III secretion system GO:0009306 NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 606 639 - T 23-04-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 PANTHER PTHR30604 253 661 1.1E-80 T 23-04-2016 NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 Pfam PF03958 Bacterial type II/III secretion system short domain 351 411 3.8E-9 T 23-04-2016 IPR005644 NolW-like NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 PRINTS PR01032 Gene IV protein signature 588 616 4.8E-9 T 23-04-2016 NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 PRINTS PR01032 Gene IV protein signature 641 663 4.8E-9 T 23-04-2016 NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 PRINTS PR01032 Gene IV protein signature 521 544 4.8E-9 T 23-04-2016 NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 PRINTS PR01032 Gene IV protein signature 480 503 4.8E-9 T 23-04-2016 NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 253 660 9.4E-119 T 23-04-2016 IPR013355 Type IV pilus secretin PilQ GO:0009297|GO:0009306 NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 PRINTS PR00811 Bacterial general secretion pathway protein D signature 648 662 1.3E-16 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 PRINTS PR00811 Bacterial general secretion pathway protein D signature 496 520 1.3E-16 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 PRINTS PR00811 Bacterial general secretion pathway protein D signature 412 422 1.3E-16 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 PRINTS PR00811 Bacterial general secretion pathway protein D signature 531 541 1.3E-16 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 PRINTS PR00811 Bacterial general secretion pathway protein D signature 625 643 1.3E-16 T 23-04-2016 IPR001775 GspD/PilQ family NIDE_RS20370 f9085f8480c6177b956cc2c6c33e367b 664 Pfam PF11741 AMIN domain 99 167 2.6E-6 T 23-04-2016 IPR021731 AMIN domain NIDE_RS04450 18b1a2e2bf201bdeca34f4351de19cf8 300 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 92 235 1.8E-19 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NIDE_RS04450 18b1a2e2bf201bdeca34f4351de19cf8 300 PANTHER PTHR32154:SF4 1 289 1.1E-83 T 23-04-2016 NIDE_RS04450 18b1a2e2bf201bdeca34f4351de19cf8 300 PANTHER PTHR32154 1 289 1.1E-83 T 23-04-2016 NIDE_RS04450 18b1a2e2bf201bdeca34f4351de19cf8 300 SUPERFAMILY SSF52518 42 260 3.81E-43 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS04450 18b1a2e2bf201bdeca34f4351de19cf8 300 Gene3D G3DSA:3.40.50.970 36 289 1.4E-47 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS17500 d208801ca6cdd94160397be5a11f79d4 159 Gene3D G3DSA:3.40.1520.10 14 100 6.5E-44 T 23-04-2016 IPR007153 Adenosine specific kinase NIDE_RS17500 d208801ca6cdd94160397be5a11f79d4 159 PANTHER PTHR36155:SF1 1 159 4.8E-78 T 23-04-2016 NIDE_RS17500 d208801ca6cdd94160397be5a11f79d4 159 PANTHER PTHR36155 1 159 4.8E-78 T 23-04-2016 NIDE_RS17500 d208801ca6cdd94160397be5a11f79d4 159 Pfam PF04008 Adenosine specific kinase 6 158 1.3E-65 T 23-04-2016 IPR007153 Adenosine specific kinase NIDE_RS17500 d208801ca6cdd94160397be5a11f79d4 159 Gene3D G3DSA:2.10.70.30 101 139 6.4E-28 T 23-04-2016 NIDE_RS17500 d208801ca6cdd94160397be5a11f79d4 159 SUPERFAMILY SSF103165 2 158 5.49E-58 T 23-04-2016 IPR007153 Adenosine specific kinase NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 6.4E-7 T 23-04-2016 NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 131 140 6.4E-7 T 23-04-2016 NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 5 434 34.934 T 23-04-2016 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 Gene3D G3DSA:3.50.50.60 97 163 1.7E-15 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 Gene3D G3DSA:3.50.50.60 317 366 1.7E-15 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 Gene3D G3DSA:3.50.50.60 4 52 1.7E-15 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 4 433 1.9E-195 T 23-04-2016 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 PANTHER PTHR11806 1 437 2.5E-211 T 23-04-2016 NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 SUPERFAMILY SSF51905 2 367 6.76E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 PANTHER PTHR11806:SF2 1 437 2.5E-211 T 23-04-2016 NIDE_RS01355 108e57e64bb9e9729f97ff67c794eb4e 438 Pfam PF01134 Glucose inhibited division protein A 4 366 4.1E-107 T 23-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 NIDE_RS06855 3d11e125bcc1c7b90d7b18763af73720 216 Gene3D G3DSA:1.10.10.640 185 212 8.3E-7 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical NIDE_RS06855 3d11e125bcc1c7b90d7b18763af73720 216 Gene3D G3DSA:1.10.10.640 89 129 8.3E-7 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical NIDE_RS06855 3d11e125bcc1c7b90d7b18763af73720 216 PANTHER PTHR36573 19 213 1.4E-14 T 23-04-2016 NIDE_RS06855 3d11e125bcc1c7b90d7b18763af73720 216 Gene3D G3DSA:3.10.450.50 46 88 1.5E-6 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS06855 3d11e125bcc1c7b90d7b18763af73720 216 Gene3D G3DSA:3.10.450.50 132 184 1.5E-6 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS06855 3d11e125bcc1c7b90d7b18763af73720 216 Pfam PF05494 MlaC protein 53 211 5.1E-26 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC NIDE_RS03165 ea9faf8bf1c657f67efb2de78360d45b 357 Pfam PF01966 HD domain 179 299 7.4E-14 T 23-04-2016 IPR006674 HD domain NIDE_RS03165 ea9faf8bf1c657f67efb2de78360d45b 357 Gene3D G3DSA:3.40.50.2300 8 136 1.2E-30 T 23-04-2016 NIDE_RS03165 ea9faf8bf1c657f67efb2de78360d45b 357 SUPERFAMILY SSF109604 156 340 1.83E-33 T 23-04-2016 NIDE_RS03165 ea9faf8bf1c657f67efb2de78360d45b 357 PANTHER PTHR26402 9 128 2.3E-32 T 23-04-2016 NIDE_RS03165 ea9faf8bf1c657f67efb2de78360d45b 357 SUPERFAMILY SSF52172 9 164 3.56E-33 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS03165 ea9faf8bf1c657f67efb2de78360d45b 357 SMART SM00448 9 124 4.7E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03165 ea9faf8bf1c657f67efb2de78360d45b 357 Gene3D G3DSA:1.10.3210.10 159 339 7.3E-20 T 23-04-2016 IPR006674 HD domain NIDE_RS03165 ea9faf8bf1c657f67efb2de78360d45b 357 SMART SM00471 173 309 1.2E-8 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS03165 ea9faf8bf1c657f67efb2de78360d45b 357 Pfam PF00072 Response regulator receiver domain 12 124 8.5E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05655 0b77a84f8229e42559585223c16cd26c 224 PANTHER PTHR10520 10 205 5.7E-100 T 23-04-2016 NIDE_RS05655 0b77a84f8229e42559585223c16cd26c 224 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 145 168 - T 23-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS05655 0b77a84f8229e42559585223c16cd26c 224 SUPERFAMILY SSF53328 10 212 6.67E-63 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS05655 0b77a84f8229e42559585223c16cd26c 224 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 10 203 1.2E-71 T 23-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 NIDE_RS05655 0b77a84f8229e42559585223c16cd26c 224 Gene3D G3DSA:3.40.50.170 10 207 4.9E-69 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS05655 0b77a84f8229e42559585223c16cd26c 224 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 10 199 34.413 T 23-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 NIDE_RS05655 0b77a84f8229e42559585223c16cd26c 224 Pfam PF00551 Formyl transferase 10 193 2.1E-56 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 NIDE_RS19075 3538f0365f282e4bc5eeed5d89e62db0 190 PANTHER PTHR34406 3 188 9.3E-56 T 23-04-2016 NIDE_RS19075 3538f0365f282e4bc5eeed5d89e62db0 190 PANTHER PTHR34406:SF1 3 188 9.3E-56 T 23-04-2016 NIDE_RS19075 3538f0365f282e4bc5eeed5d89e62db0 190 Gene3D G3DSA:2.40.128.110 18 188 2.1E-60 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like NIDE_RS19075 3538f0365f282e4bc5eeed5d89e62db0 190 SMART SM00867 18 186 9.0E-66 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like NIDE_RS19075 3538f0365f282e4bc5eeed5d89e62db0 190 SUPERFAMILY SSF101874 17 188 1.16E-56 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like NIDE_RS19075 3538f0365f282e4bc5eeed5d89e62db0 190 Pfam PF04264 YceI-like domain 19 184 3.3E-43 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 Gene3D G3DSA:3.30.70.270 135 296 5.4E-61 T 23-04-2016 NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 Gene3D G3DSA:3.40.50.2300 1 133 3.8E-27 T 23-04-2016 NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 SUPERFAMILY SSF55073 139 296 2.28E-53 T 23-04-2016 IPR029787 Nucleotide cyclase NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 SUPERFAMILY SSF52172 1 160 2.13E-27 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 Pfam PF00990 Diguanylate cyclase, GGDEF domain 134 290 1.1E-51 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 132 292 1.1E-44 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 Pfam PF00072 Response regulator receiver domain 5 110 4.2E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 SMART SM00267 123 295 4.7E-68 T 23-04-2016 IPR000160 GGDEF domain NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 SMART SM00448 2 116 4.2E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 PANTHER PTHR10799:SF774 111 288 4.0E-43 T 23-04-2016 NIDE_RS20165 68a6576a90efe00927d62b88f73d9b30 310 PANTHER PTHR10799 111 288 4.0E-43 T 23-04-2016 NIDE_RS09150 921485372293b008d5f1ab932e13688d 411 Pfam PF13646 HEAT repeats 150 232 7.0E-7 T 23-04-2016 NIDE_RS09150 921485372293b008d5f1ab932e13688d 411 TIGRFAM TIGR02270 TIGR02270: conserved hypothetical protein 2 408 2.4E-123 T 23-04-2016 IPR011959 Conserved hypothetical protein CHP02270 NIDE_RS09150 921485372293b008d5f1ab932e13688d 411 SUPERFAMILY SSF48371 150 265 4.48E-11 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS09150 921485372293b008d5f1ab932e13688d 411 Gene3D G3DSA:1.25.10.10 146 288 1.9E-11 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS09150 921485372293b008d5f1ab932e13688d 411 Gene3D G3DSA:1.25.10.10 359 388 1.9E-11 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS01580 dbe7909b10c60ea9188b5450f3dc2026 334 PIRSF PIRSF002849 5 334 2.2E-127 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted NIDE_RS01580 dbe7909b10c60ea9188b5450f3dc2026 334 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 58 188 4.6E-63 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 NIDE_RS01580 dbe7909b10c60ea9188b5450f3dc2026 334 PANTHER PTHR11603 25 334 1.7E-122 T 23-04-2016 NIDE_RS01580 dbe7909b10c60ea9188b5450f3dc2026 334 Gene3D G3DSA:1.10.8.300 219 330 1.2E-31 T 23-04-2016 NIDE_RS01580 dbe7909b10c60ea9188b5450f3dc2026 334 SMART SM00382 55 196 3.3E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS01580 dbe7909b10c60ea9188b5450f3dc2026 334 SUPERFAMILY SSF52540 29 302 3.64E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01580 dbe7909b10c60ea9188b5450f3dc2026 334 PANTHER PTHR11603:SF155 25 334 1.7E-122 T 23-04-2016 NIDE_RS01580 dbe7909b10c60ea9188b5450f3dc2026 334 Gene3D G3DSA:3.40.50.300 41 204 2.8E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05630 1e3dbce27091991beb57d0ebfd87baa5 301 SUPERFAMILY SSF101386 141 254 1.06E-18 T 23-04-2016 NIDE_RS05630 1e3dbce27091991beb57d0ebfd87baa5 301 Gene3D G3DSA:1.10.287.1080 21 72 2.5E-8 T 23-04-2016 NIDE_RS05630 1e3dbce27091991beb57d0ebfd87baa5 301 Gene3D G3DSA:1.10.287.1080 136 236 5.5E-10 T 23-04-2016 NIDE_RS05630 1e3dbce27091991beb57d0ebfd87baa5 301 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 172 245 3.6E-5 T 23-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core NIDE_RS05630 1e3dbce27091991beb57d0ebfd87baa5 301 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 27 100 3.0E-28 T 23-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core NIDE_RS05630 1e3dbce27091991beb57d0ebfd87baa5 301 PANTHER PTHR30522:SF0 1 282 7.8E-107 T 23-04-2016 IPR011551 NTP pyrophosphohydrolase MazG NIDE_RS05630 1e3dbce27091991beb57d0ebfd87baa5 301 SUPERFAMILY SSF101386 4 105 6.25E-24 T 23-04-2016 NIDE_RS05630 1e3dbce27091991beb57d0ebfd87baa5 301 PANTHER PTHR30522 1 282 7.8E-107 T 23-04-2016 NIDE_RS05630 1e3dbce27091991beb57d0ebfd87baa5 301 TIGRFAM TIGR00444 mazG: MazG family protein 11 276 4.8E-87 T 23-04-2016 IPR011551 NTP pyrophosphohydrolase MazG NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 SUPERFAMILY SSF81296 216 285 8.05E-9 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 SUPERFAMILY SSF81296 291 371 3.95E-8 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 Gene3D G3DSA:2.60.40.10 31 93 2.4E-9 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 Gene3D G3DSA:2.60.40.10 107 184 8.7E-12 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 Gene3D G3DSA:2.60.40.10 215 290 4.2E-12 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 Gene3D G3DSA:2.60.40.10 402 501 9.7E-13 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 Gene3D G3DSA:2.60.40.10 291 374 3.0E-10 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 Pfam PF01833 IPT/TIG domain 108 185 3.4E-4 T 23-04-2016 IPR002909 IPT domain GO:0005515 NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 Pfam PF01833 IPT/TIG domain 403 485 5.1E-6 T 23-04-2016 IPR002909 IPT domain GO:0005515 NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 Pfam PF01833 IPT/TIG domain 216 280 1.1E-4 T 23-04-2016 IPR002909 IPT domain GO:0005515 NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 Pfam PF01833 IPT/TIG domain 31 94 3.7E-5 T 23-04-2016 IPR002909 IPT domain GO:0005515 NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 SUPERFAMILY SSF81296 107 185 2.55E-8 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 SUPERFAMILY SSF81296 456 488 6.89E-10 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 SUPERFAMILY SSF81296 401 428 6.89E-10 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS07910 8db7d1661331390a75c4842d6bf1094b 557 SUPERFAMILY SSF81296 31 94 1.87E-7 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS10850 2080ed65d86c43caa6ce55113961159b 153 Pfam PF04238 Protein of unknown function (DUF420) 9 147 1.8E-23 T 23-04-2016 IPR007352 Protein of unknown function DUF420 NIDE_RS16910 85faffa06e8488889d1d8cb734ee5004 346 Gene3D G3DSA:3.20.20.70 39 342 6.4E-25 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS16910 85faffa06e8488889d1d8cb734ee5004 346 SUPERFAMILY SSF102114 39 341 4.05E-36 T 23-04-2016 NIDE_RS16910 85faffa06e8488889d1d8cb734ee5004 346 PANTHER PTHR11228:SF20 48 344 2.2E-129 T 23-04-2016 NIDE_RS16910 85faffa06e8488889d1d8cb734ee5004 346 PANTHER PTHR11228 48 344 2.2E-129 T 23-04-2016 NIDE_RS16910 85faffa06e8488889d1d8cb734ee5004 346 TIGRFAM TIGR04167 rSAM_SeCys: radical SAM/Cys-rich domain protein 43 344 3.4E-135 T 23-04-2016 IPR026351 Radical SAM/Cys-rich domain protein NIDE_RS16910 85faffa06e8488889d1d8cb734ee5004 346 Pfam PF12345 Protein of unknown function (DUF3641) 209 343 1.6E-55 T 23-04-2016 IPR024521 Domain of unknown function DUF3641 NIDE_RS08860 1e54367bb24b80b7ee7f90075eb2c00c 421 Gene3D G3DSA:1.20.1250.20 12 202 9.9E-10 T 23-04-2016 NIDE_RS08860 1e54367bb24b80b7ee7f90075eb2c00c 421 Gene3D G3DSA:1.20.1250.20 224 412 2.0E-10 T 23-04-2016 NIDE_RS08860 1e54367bb24b80b7ee7f90075eb2c00c 421 Pfam PF07690 Major Facilitator Superfamily 20 365 8.0E-25 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS08860 1e54367bb24b80b7ee7f90075eb2c00c 421 PANTHER PTHR12778 12 398 1.3E-97 T 23-04-2016 NIDE_RS08860 1e54367bb24b80b7ee7f90075eb2c00c 421 SUPERFAMILY SSF103473 7 403 9.81E-34 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS20925 ea364cbbe71eae4582b21d6fae14863a 223 SMART SM00060 57 127 70.0 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20925 ea364cbbe71eae4582b21d6fae14863a 223 SMART SM00060 131 211 0.031 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20925 ea364cbbe71eae4582b21d6fae14863a 223 Gene3D G3DSA:2.60.40.10 142 219 1.4E-12 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS20925 ea364cbbe71eae4582b21d6fae14863a 223 SUPERFAMILY SSF49265 141 218 1.78E-11 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20925 ea364cbbe71eae4582b21d6fae14863a 223 Pfam PF00041 Fibronectin type III domain 142 211 5.9E-9 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS06185 39632124d266ccf4200ad3881eabbc5b 129 Pfam PF00416 Ribosomal protein S13/S18 3 109 2.7E-30 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06185 39632124d266ccf4200ad3881eabbc5b 129 PANTHER PTHR10871 1 114 6.0E-53 T 23-04-2016 NIDE_RS06185 39632124d266ccf4200ad3881eabbc5b 129 Gene3D G3DSA:1.10.8.50 1 71 1.6E-28 T 23-04-2016 NIDE_RS06185 39632124d266ccf4200ad3881eabbc5b 129 PIRSF PIRSF002134 1 124 1.9E-40 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06185 39632124d266ccf4200ad3881eabbc5b 129 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 28.622 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06185 39632124d266ccf4200ad3881eabbc5b 129 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 23-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS06185 39632124d266ccf4200ad3881eabbc5b 129 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 5.0E-51 T 23-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06185 39632124d266ccf4200ad3881eabbc5b 129 Gene3D G3DSA:4.10.910.10 73 120 3.9E-23 T 23-04-2016 IPR027437 30s ribosomal protein S13, C-terminal NIDE_RS06185 39632124d266ccf4200ad3881eabbc5b 129 SUPERFAMILY SSF46946 2 120 1.5E-42 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 NIDE_RS12215 fb217841e8c74228fee7e5ed56f439e9 254 Pfam PF02654 Cobalamin-5-phosphate synthase 11 245 2.2E-46 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 NIDE_RS12215 fb217841e8c74228fee7e5ed56f439e9 254 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 12 247 2.5E-32 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 NIDE_RS12215 fb217841e8c74228fee7e5ed56f439e9 254 PANTHER PTHR34148 1 254 5.2E-40 T 23-04-2016 NIDE_RS12215 fb217841e8c74228fee7e5ed56f439e9 254 PANTHER PTHR34148:SF1 1 254 5.2E-40 T 23-04-2016 NIDE_RS12215 fb217841e8c74228fee7e5ed56f439e9 254 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 254 41.614 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 NIDE_RS07235 087b4ac7dcd3b503697f3126ecc63e93 165 Gene3D G3DSA:3.30.70.640 3 163 5.4E-66 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 NIDE_RS07235 087b4ac7dcd3b503697f3126ecc63e93 165 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 157 1.1E-61 T 23-04-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 NIDE_RS07235 087b4ac7dcd3b503697f3126ecc63e93 165 PANTHER PTHR22960 1 163 4.0E-94 T 23-04-2016 NIDE_RS07235 087b4ac7dcd3b503697f3126ecc63e93 165 SUPERFAMILY SSF55040 11 160 1.44E-57 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 NIDE_RS07235 087b4ac7dcd3b503697f3126ecc63e93 165 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 163 36.024 T 23-04-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type UniPathway: UPA00344 NIDE_RS07235 087b4ac7dcd3b503697f3126ecc63e93 165 Pfam PF01967 MoaC family 15 155 5.5E-54 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 NIDE_RS00160 7472cb801a385da94662c9842e275741 384 PANTHER PTHR30294 2 384 6.3E-85 T 23-04-2016 NIDE_RS00160 7472cb801a385da94662c9842e275741 384 Pfam PF12698 ABC-2 family transporter protein 24 374 6.1E-42 T 23-04-2016 NIDE_RS00160 7472cb801a385da94662c9842e275741 384 PANTHER PTHR30294:SF12 2 384 6.3E-85 T 23-04-2016 NIDE_RS03640 a782c112e13e63f97f8dcdefee5ca10e 343 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 334 143.059 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 NIDE_RS03640 a782c112e13e63f97f8dcdefee5ca10e 343 SUPERFAMILY SSF53659 1 329 1.73E-101 T 23-04-2016 NIDE_RS03640 a782c112e13e63f97f8dcdefee5ca10e 343 Gene3D G3DSA:3.40.718.10 1 328 8.2E-132 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 NIDE_RS03640 a782c112e13e63f97f8dcdefee5ca10e 343 PANTHER PTHR30100 1 336 4.5E-133 T 23-04-2016 NIDE_RS03640 a782c112e13e63f97f8dcdefee5ca10e 343 PANTHER PTHR30100:SF1 1 336 4.5E-133 T 23-04-2016 NIDE_RS03640 a782c112e13e63f97f8dcdefee5ca10e 343 PIRSF PIRSF002465 1 334 2.4E-124 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 NIDE_RS03640 a782c112e13e63f97f8dcdefee5ca10e 343 Pfam PF02504 Fatty acid synthesis protein 1 317 2.2E-116 T 23-04-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 UniPathway: UPA00085 NIDE_RS03640 a782c112e13e63f97f8dcdefee5ca10e 343 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 335 3.2E-114 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 NIDE_RS06430 2b2b9bac3dfeb7d6dc377a2512e1d80f 264 PANTHER PTHR36843 11 264 4.4E-17 T 23-04-2016 NIDE_RS06430 2b2b9bac3dfeb7d6dc377a2512e1d80f 264 Pfam PF06778 Chlorite dismutase 62 251 4.4E-42 T 23-04-2016 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase NIDE_RS06430 2b2b9bac3dfeb7d6dc377a2512e1d80f 264 Gene3D G3DSA:3.30.70.1030 29 162 5.4E-21 T 23-04-2016 NIDE_RS06430 2b2b9bac3dfeb7d6dc377a2512e1d80f 264 SUPERFAMILY SSF54909 34 262 6.97E-45 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS06430 2b2b9bac3dfeb7d6dc377a2512e1d80f 264 Gene3D G3DSA:3.30.70.1100 163 262 6.1E-26 T 23-04-2016 NIDE_RS06430 2b2b9bac3dfeb7d6dc377a2512e1d80f 264 PANTHER PTHR36843:SF1 11 264 4.4E-17 T 23-04-2016 NIDE_RS08090 e7817e7a6572a49785b34dd2c44ef5c2 138 Pfam PF13436 Glycine-zipper domain 65 108 4.3E-10 T 23-04-2016 IPR025693 Glycine-zipper-containing OmpA-like membrane domain NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 6 623 42.29 T 23-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 SUPERFAMILY SSF51905 98 261 1.33E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 SUPERFAMILY SSF51905 7 67 1.33E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 PANTHER PTHR11806:SF0 9 624 0.0 T 23-04-2016 NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 Pfam PF01134 Glucose inhibited division protein A 9 398 2.2E-167 T 23-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 23-04-2016 IPR020595 MnmG-related, conserved site NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 Pfam PF13932 GidA associated domain 401 615 3.8E-69 T 23-04-2016 IPR026904 GidA associated domain 3 NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 23-04-2016 IPR020595 MnmG-related, conserved site NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 SMART SM01228 545 616 6.2E-42 T 23-04-2016 NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 Gene3D G3DSA:3.50.50.60 7 224 9.7E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 9 621 2.5E-266 T 23-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 NIDE_RS01660 450521a05c6e3586330d3dc931974658 627 PANTHER PTHR11806 9 624 0.0 T 23-04-2016 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 PIRSF PIRSF002133 1 123 3.1E-55 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 Pfam PF00164 Ribosomal protein S12/S23 3 123 9.5E-44 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 SUPERFAMILY SSF50249 2 123 1.11E-52 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 Gene3D G3DSA:2.40.50.140 1 123 1.6E-65 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 2.4E-69 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.3E-61 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.3E-61 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.3E-61 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.3E-61 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.3E-61 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.3E-61 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 PANTHER PTHR11652 1 116 1.0E-73 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06045 23c15c3ced934ac77ef31251790c4cdb 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 40.867 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 NIDE_RS13950 3e8912f6c6c824613f3ed3e33d87667a 285 PANTHER PTHR22572:SF14 8 277 7.5E-101 T 23-04-2016 NIDE_RS13950 3e8912f6c6c824613f3ed3e33d87667a 285 Gene3D G3DSA:3.90.550.10 7 275 1.6E-72 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13950 3e8912f6c6c824613f3ed3e33d87667a 285 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 6 265 3.4E-115 T 23-04-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 NIDE_RS13950 3e8912f6c6c824613f3ed3e33d87667a 285 SUPERFAMILY SSF53448 7 278 4.28E-67 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13950 3e8912f6c6c824613f3ed3e33d87667a 285 Pfam PF00483 Nucleotidyl transferase 8 244 9.8E-29 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 NIDE_RS13950 3e8912f6c6c824613f3ed3e33d87667a 285 PANTHER PTHR22572 8 277 7.5E-101 T 23-04-2016 NIDE_RS14810 f3091f877208c63d2a0f75357743889f 532 SUPERFAMILY SSF103473 8 196 3.27E-34 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS14810 f3091f877208c63d2a0f75357743889f 532 SUPERFAMILY SSF103473 481 510 3.27E-34 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS14810 f3091f877208c63d2a0f75357743889f 532 SUPERFAMILY SSF103473 254 425 3.27E-34 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS14810 f3091f877208c63d2a0f75357743889f 532 Gene3D G3DSA:1.20.1250.20 21 191 8.3E-17 T 23-04-2016 NIDE_RS14810 f3091f877208c63d2a0f75357743889f 532 Gene3D G3DSA:1.20.1250.20 270 438 5.0E-9 T 23-04-2016 NIDE_RS14810 f3091f877208c63d2a0f75357743889f 532 Gene3D G3DSA:1.20.1250.20 482 512 5.0E-9 T 23-04-2016 NIDE_RS14810 f3091f877208c63d2a0f75357743889f 532 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 39 504 7.6E-71 T 23-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 NIDE_RS14810 f3091f877208c63d2a0f75357743889f 532 PANTHER PTHR23501:SF52 39 506 2.2E-70 T 23-04-2016 NIDE_RS14810 f3091f877208c63d2a0f75357743889f 532 PANTHER PTHR23501 39 506 2.2E-70 T 23-04-2016 NIDE_RS14810 f3091f877208c63d2a0f75357743889f 532 Pfam PF07690 Major Facilitator Superfamily 22 415 1.2E-23 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS11730 c3ddae60ff6850edad651a313272e0ca 273 PANTHER PTHR21057 5 267 8.2E-157 T 23-04-2016 NIDE_RS11730 c3ddae60ff6850edad651a313272e0ca 273 Gene3D G3DSA:3.20.20.70 16 272 8.0E-117 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS11730 c3ddae60ff6850edad651a313272e0ca 273 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 12 273 50.258 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 NIDE_RS11730 c3ddae60ff6850edad651a313272e0ca 273 Pfam PF00793 DAHP synthetase I family 8 259 9.4E-69 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 NIDE_RS11730 c3ddae60ff6850edad651a313272e0ca 273 SUPERFAMILY SSF51569 4 271 1.74E-105 T 23-04-2016 NIDE_RS11730 c3ddae60ff6850edad651a313272e0ca 273 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 19 269 2.1E-121 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 NIDE_RS11730 c3ddae60ff6850edad651a313272e0ca 273 PANTHER PTHR21057:SF2 5 267 8.2E-157 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 NIDE_RS08980 c80328e947b0f8407aa664c1e3e8fe53 1003 Pfam PF04773 FecR protein 74 160 7.8E-6 T 23-04-2016 IPR006860 FecR protein NIDE_RS13065 c62ed6b163486112037da725df27e489 383 Gene3D G3DSA:3.40.50.2000 172 359 7.9E-34 T 23-04-2016 NIDE_RS13065 c62ed6b163486112037da725df27e489 383 Pfam PF00534 Glycosyl transferases group 1 192 358 7.3E-40 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS13065 c62ed6b163486112037da725df27e489 383 SUPERFAMILY SSF53756 13 380 2.04E-85 T 23-04-2016 NIDE_RS13065 c62ed6b163486112037da725df27e489 383 PANTHER PTHR12526 24 380 7.4E-67 T 23-04-2016 NIDE_RS13065 c62ed6b163486112037da725df27e489 383 Pfam PF13439 Glycosyltransferase Family 4 24 184 4.7E-20 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 PANTHER PTHR10617:SF101 1 366 2.2E-58 T 23-04-2016 NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 Gene3D G3DSA:3.30.9.10 163 310 1.8E-30 T 23-04-2016 NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 PANTHER PTHR10617 1 366 2.2E-58 T 23-04-2016 NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 Gene3D G3DSA:3.50.50.60 8 162 1.4E-17 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 Pfam PF01494 FAD binding domain 10 300 9.4E-13 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 2.4E-16 T 23-04-2016 NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 11 33 2.4E-16 T 23-04-2016 NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 274 289 2.4E-16 T 23-04-2016 NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 SUPERFAMILY SSF51905 270 368 7.92E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 SUPERFAMILY SSF51905 10 165 7.92E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS03915 3ac30d7eaac00399bc504b3804e240df 402 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 10 309 3.8E-64 T 23-04-2016 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 NIDE_RS01725 4ab3f03b84a339fed895c54e3413ec05 198 Pfam PF11845 Protein of unknown function (DUF3365) 19 195 4.6E-21 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS16955 4aeeb8bb9a414a9106fac7b7f13601d8 111 PANTHER PTHR33154 15 109 5.7E-29 T 23-04-2016 NIDE_RS16955 4aeeb8bb9a414a9106fac7b7f13601d8 111 SUPERFAMILY SSF46785 15 102 2.04E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16955 4aeeb8bb9a414a9106fac7b7f13601d8 111 Gene3D G3DSA:1.10.10.10 15 98 5.5E-33 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16955 4aeeb8bb9a414a9106fac7b7f13601d8 111 SMART SM00418 19 93 8.0E-31 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS16955 4aeeb8bb9a414a9106fac7b7f13601d8 111 Pfam PF01022 Bacterial regulatory protein, arsR family 26 70 1.8E-15 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS16955 4aeeb8bb9a414a9106fac7b7f13601d8 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 5.6E-20 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS16955 4aeeb8bb9a414a9106fac7b7f13601d8 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 5.6E-20 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS16955 4aeeb8bb9a414a9106fac7b7f13601d8 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 51 5.6E-20 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS16955 4aeeb8bb9a414a9106fac7b7f13601d8 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 21 36 5.6E-20 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS05165 0382ea57ebe499af32518e6957c335eb 288 Pfam PF01435 Peptidase family M48 89 264 2.7E-26 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 NIDE_RS05165 0382ea57ebe499af32518e6957c335eb 288 PANTHER PTHR22726 60 288 7.3E-40 T 23-04-2016 NIDE_RS05165 0382ea57ebe499af32518e6957c335eb 288 PANTHER PTHR22726:SF9 60 288 7.3E-40 T 23-04-2016 NIDE_RS05165 0382ea57ebe499af32518e6957c335eb 288 Gene3D G3DSA:3.30.2010.10 81 161 1.4E-20 T 23-04-2016 NIDE_RS19610 71ce7ca91f4d5cc89b126186109a41fb 226 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 49 180 1.0E-12 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 NIDE_RS19610 71ce7ca91f4d5cc89b126186109a41fb 226 SUPERFAMILY SSF55846 35 193 3.53E-28 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 NIDE_RS19610 71ce7ca91f4d5cc89b126186109a41fb 226 PANTHER PTHR30417 26 192 8.2E-23 T 23-04-2016 NIDE_RS19610 71ce7ca91f4d5cc89b126186109a41fb 226 Gene3D G3DSA:3.40.80.10 22 193 2.1E-31 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 NIDE_RS19610 71ce7ca91f4d5cc89b126186109a41fb 226 SMART SM00644 38 180 1.1E-9 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 NIDE_RS20470 fdfbc2c1f974b0d61385963b1bf3d46d 256 PANTHER PTHR30007 4 255 1.3E-30 T 23-04-2016 NIDE_RS20470 fdfbc2c1f974b0d61385963b1bf3d46d 256 PANTHER PTHR30007:SF0 4 255 1.3E-30 T 23-04-2016 NIDE_RS20470 fdfbc2c1f974b0d61385963b1bf3d46d 256 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 4 79 4.5E-20 T 23-04-2016 IPR025161 Putative transposase IS4/IS5 family NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 11 370 1.9E-118 T 23-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 SUPERFAMILY SSF56059 107 309 3.18E-59 T 23-04-2016 NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 Pfam PF02222 ATP-grasp domain 116 289 1.0E-53 T 23-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 PANTHER PTHR11609:SF5 8 372 1.5E-134 T 23-04-2016 NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 12 39 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 11 369 40.707 T 23-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 Gene3D G3DSA:3.30.470.20 160 382 3.1E-83 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 SUPERFAMILY SSF52440 8 104 3.74E-23 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 SUPERFAMILY SSF51246 313 382 1.57E-13 T 23-04-2016 IPR011054 Rudiment single hybrid motif NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 Gene3D G3DSA:3.30.1490.20 108 159 7.5E-5 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 Gene3D G3DSA:3.40.50.20 5 107 4.3E-32 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS18065 64cd6d9e229778cd3145932156113606 388 PANTHER PTHR11609 8 372 1.5E-134 T 23-04-2016 NIDE_RS08900 172a94c9ba55507104dcad32b8660b20 181 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 71 151 8.6E-22 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS08900 172a94c9ba55507104dcad32b8660b20 181 Gene3D G3DSA:2.160.20.10 50 160 8.1E-23 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS08900 172a94c9ba55507104dcad32b8660b20 181 Pfam PF05860 haemagglutination activity domain 55 151 4.2E-26 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS08900 172a94c9ba55507104dcad32b8660b20 181 SMART SM00912 38 157 4.9E-18 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS08900 172a94c9ba55507104dcad32b8660b20 181 SUPERFAMILY SSF51126 56 162 3.45E-22 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS01320 f9670bdd5e1770f7f95c323d187f16ad 139 SUPERFAMILY SSF88723 2 126 2.42E-7 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS01320 f9670bdd5e1770f7f95c323d187f16ad 139 PANTHER PTHR34610:SF3 1 115 1.3E-25 T 23-04-2016 NIDE_RS01320 f9670bdd5e1770f7f95c323d187f16ad 139 Pfam PF13470 PIN domain 2 114 2.4E-16 T 23-04-2016 IPR002716 PIN domain NIDE_RS01320 f9670bdd5e1770f7f95c323d187f16ad 139 PANTHER PTHR34610 1 115 1.3E-25 T 23-04-2016 NIDE_RS01320 f9670bdd5e1770f7f95c323d187f16ad 139 TIGRFAM TIGR00305 TIGR00305: putative toxin-antitoxin system toxin component, PIN family 2 115 1.2E-19 T 23-04-2016 IPR002850 PIN family, putative toxin-antitoxin system toxin component NIDE_RS07480 be45b50a28cb7a1b85dc2ee623f50bc1 72 Pfam PF09720 Putative addiction module component 10 62 1.1E-15 T 23-04-2016 IPR013406 Conserved hypothetical protein CHP02574, addiction module NIDE_RS17985 be6cb418068f8aaa1e6455773fd9fe17 423 Pfam PF07642 Putative beta-barrel porin-2, OmpL-like. bbp2 74 421 9.0E-58 T 23-04-2016 IPR011486 Putative beta-barrel porin-2, OmpL-like. bbp2 NIDE_RS17985 be6cb418068f8aaa1e6455773fd9fe17 423 Gene3D G3DSA:2.40.160.10 163 257 1.1E-4 T 23-04-2016 IPR023614 Porin domain NIDE_RS07915 6f8a35e1f8a1e14efee43e822f1fec74 322 SUPERFAMILY SSF110296 42 315 6.45E-41 T 23-04-2016 NIDE_RS07915 6f8a35e1f8a1e14efee43e822f1fec74 322 Pfam PF14870 Photosynthesis system II assembly factor YCF48 37 123 3.5E-12 T 23-04-2016 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain NIDE_RS07915 6f8a35e1f8a1e14efee43e822f1fec74 322 Pfam PF14870 Photosynthesis system II assembly factor YCF48 203 284 4.2E-15 T 23-04-2016 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain NIDE_RS07915 6f8a35e1f8a1e14efee43e822f1fec74 322 Gene3D G3DSA:2.130.10.140 48 286 1.0E-32 T 23-04-2016 NIDE_RS02045 bcecdcd0a6bdf915187eac060c4dc014 275 SUPERFAMILY SSF55681 29 239 1.74E-62 T 23-04-2016 NIDE_RS02045 bcecdcd0a6bdf915187eac060c4dc014 275 Gene3D G3DSA:3.90.1550.10 32 236 3.2E-70 T 23-04-2016 NIDE_RS02045 bcecdcd0a6bdf915187eac060c4dc014 275 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 104 157 2.0E-9 T 23-04-2016 NIDE_RS02045 bcecdcd0a6bdf915187eac060c4dc014 275 Hamap MF_00013 Octanoyltransferase [lipB]. 27 239 34.116 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 NIDE_RS02045 bcecdcd0a6bdf915187eac060c4dc014 275 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 100 115 - T 23-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 NIDE_RS02045 bcecdcd0a6bdf915187eac060c4dc014 275 PANTHER PTHR10993 37 252 8.7E-75 T 23-04-2016 NIDE_RS02045 bcecdcd0a6bdf915187eac060c4dc014 275 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 50 234 7.7E-50 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 NIDE_RS08010 4963a487963ec84cee273a521e6f8014 162 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 12 153 45.594 T 23-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 NIDE_RS08010 4963a487963ec84cee273a521e6f8014 162 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 57 94 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 NIDE_RS08010 4963a487963ec84cee273a521e6f8014 162 PANTHER PTHR11079:SF72 8 154 4.1E-42 T 23-04-2016 NIDE_RS08010 4963a487963ec84cee273a521e6f8014 162 Pfam PF14437 MafB19-like deaminase 9 153 7.3E-35 T 23-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 NIDE_RS08010 4963a487963ec84cee273a521e6f8014 162 Gene3D G3DSA:3.40.140.10 7 151 3.7E-56 T 23-04-2016 NIDE_RS08010 4963a487963ec84cee273a521e6f8014 162 SUPERFAMILY SSF53927 7 153 8.7E-52 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 NIDE_RS08010 4963a487963ec84cee273a521e6f8014 162 PANTHER PTHR11079 8 154 4.1E-42 T 23-04-2016 NIDE_RS16630 b0c97ea4188aef02af4fd2f54e5164d9 184 SUPERFAMILY SSF52540 63 165 3.6E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16630 b0c97ea4188aef02af4fd2f54e5164d9 184 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 62 174 2.2E-15 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 NIDE_RS16630 b0c97ea4188aef02af4fd2f54e5164d9 184 Gene3D G3DSA:3.40.50.300 36 165 1.1E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 PANTHER PTHR30295:SF9 1 156 9.9E-38 T 23-04-2016 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 PIRSF PIRSF002560 1 157 1.0E-59 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 PANTHER PTHR30295 1 156 9.9E-38 T 23-04-2016 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 SUPERFAMILY SSF47240 1 156 9.26E-43 T 23-04-2016 IPR009078 Ferritin-like superfamily NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 Gene3D G3DSA:1.20.1260.10 1 156 6.6E-52 T 23-04-2016 IPR012347 Ferritin-related NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 1.5E-55 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 Pfam PF00210 Ferritin-like domain 8 143 9.7E-35 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 PRINTS PR00601 Bacterioferritin signature 44 64 7.3E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 PRINTS PR00601 Bacterioferritin signature 23 43 7.3E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 PRINTS PR00601 Bacterioferritin signature 107 127 7.3E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 PRINTS PR00601 Bacterioferritin signature 65 85 7.3E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 PRINTS PR00601 Bacterioferritin signature 3 22 7.3E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 PRINTS PR00601 Bacterioferritin signature 86 106 7.3E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS04705 6b70b8a55484c0a3ba9c2c6b8a21a25e 158 PRINTS PR00601 Bacterioferritin signature 128 149 7.3E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 NIDE_RS03355 ed9d6ec1f34675f0cadb976214264a1b 192 PANTHER PTHR18968:SF81 10 168 8.1E-43 T 23-04-2016 NIDE_RS03355 ed9d6ec1f34675f0cadb976214264a1b 192 Gene3D G3DSA:3.40.50.970 10 168 1.7E-25 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS03355 ed9d6ec1f34675f0cadb976214264a1b 192 PANTHER PTHR18968 10 168 8.1E-43 T 23-04-2016 NIDE_RS03355 ed9d6ec1f34675f0cadb976214264a1b 192 SUPERFAMILY SSF52518 10 168 6.97E-31 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS03355 ed9d6ec1f34675f0cadb976214264a1b 192 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 43 162 2.4E-21 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NIDE_RS09130 372278ebd43aaebcf183de46d3b9907e 73 Gene3D G3DSA:3.30.920.30 13 72 5.2E-21 T 23-04-2016 NIDE_RS09130 372278ebd43aaebcf183de46d3b9907e 73 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 11 65 7.7E-18 T 23-04-2016 IPR012933 HicA mRNA interferase family GO:0003729 NIDE_RS09130 372278ebd43aaebcf183de46d3b9907e 73 SUPERFAMILY SSF54786 12 72 1.18E-14 T 23-04-2016 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 SUPERFAMILY SSF55124 2 131 1.8E-28 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 PANTHER PTHR32439 1 489 7.3E-177 T 23-04-2016 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 SUPERFAMILY SSF56014 377 497 9.55E-25 T 23-04-2016 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 SUPERFAMILY SSF55124 259 389 7.52E-15 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 PRINTS PR00397 Sirohaem Fe-binding site signature 378 396 1.77E-8 T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 PRINTS PR00397 Sirohaem Fe-binding site signature 423 441 1.77E-8 T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 Gene3D G3DSA:3.30.413.10 378 499 8.9E-27 T 23-04-2016 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 SUPERFAMILY SSF56014 122 285 1.44E-43 T 23-04-2016 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 PANTHER PTHR32439:SF0 1 489 7.3E-177 T 23-04-2016 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 122 278 8.4E-42 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 381 504 9.7E-6 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 173 189 - T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 423 439 - T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 Gene3D G3DSA:3.30.413.10 122 283 2.8E-40 T 23-04-2016 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 50 113 6.8E-19 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 301 363 1.2E-12 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 Gene3D G3DSA:3.90.480.10 52 119 1.1E-37 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS06335 f8c75c3554c357192b56b79df5186ddb 531 Gene3D G3DSA:3.90.480.10 293 358 1.1E-37 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 NIDE_RS11875 8a25ab800f2bc2686007c39fc04d15c4 182 PANTHER PTHR34875:SF3 1 178 1.8E-29 T 23-04-2016 NIDE_RS11875 8a25ab800f2bc2686007c39fc04d15c4 182 Pfam PF13740 ACT domain 4 65 4.9E-12 T 23-04-2016 NIDE_RS11875 8a25ab800f2bc2686007c39fc04d15c4 182 Gene3D G3DSA:3.30.70.260 96 174 2.7E-21 T 23-04-2016 NIDE_RS11875 8a25ab800f2bc2686007c39fc04d15c4 182 Gene3D G3DSA:3.30.70.260 2 76 3.4E-20 T 23-04-2016 NIDE_RS11875 8a25ab800f2bc2686007c39fc04d15c4 182 SUPERFAMILY SSF55021 96 176 8.78E-16 T 23-04-2016 NIDE_RS11875 8a25ab800f2bc2686007c39fc04d15c4 182 SUPERFAMILY SSF55021 4 77 2.06E-13 T 23-04-2016 NIDE_RS11875 8a25ab800f2bc2686007c39fc04d15c4 182 PANTHER PTHR34875 1 178 1.8E-29 T 23-04-2016 NIDE_RS11875 8a25ab800f2bc2686007c39fc04d15c4 182 Pfam PF01842 ACT domain 98 162 7.4E-10 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 SUPERFAMILY SSF55874 229 362 1.03E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 268 363 2.4E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 Gene3D G3DSA:3.30.565.10 238 366 4.5E-11 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 Gene3D G3DSA:3.40.50.720 27 124 1.4E-11 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 SMART SM00387 266 364 3.7E-6 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 SUPERFAMILY SSF51735 26 146 2.01E-15 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 Pfam PF07730 Histidine kinase 161 225 5.0E-15 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 PANTHER PTHR24421 156 370 1.4E-49 T 23-04-2016 NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 PANTHER PTHR24421 68 82 1.4E-49 T 23-04-2016 NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 PANTHER PTHR24421:SF23 156 370 1.4E-49 T 23-04-2016 NIDE_RS20085 890c3f668295661bf0fa1401db45ecd7 373 PANTHER PTHR24421:SF23 68 82 1.4E-49 T 23-04-2016 NIDE_RS15515 c7b6f13abb60aa277fffd40e5769fdd3 734 Gene3D G3DSA:3.20.110.10 141 452 2.6E-80 T 23-04-2016 IPR027291 Glycoside hydrolase 38/57, N-terminal domain NIDE_RS15515 c7b6f13abb60aa277fffd40e5769fdd3 734 Gene3D G3DSA:3.20.110.10 1 67 2.6E-80 T 23-04-2016 IPR027291 Glycoside hydrolase 38/57, N-terminal domain NIDE_RS15515 c7b6f13abb60aa277fffd40e5769fdd3 734 PANTHER PTHR36306:SF1 1 734 6.0E-155 T 23-04-2016 NIDE_RS15515 c7b6f13abb60aa277fffd40e5769fdd3 734 Pfam PF03065 Glycosyl hydrolase family 57 8 464 2.8E-75 T 23-04-2016 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 NIDE_RS15515 c7b6f13abb60aa277fffd40e5769fdd3 734 PANTHER PTHR36306 1 734 6.0E-155 T 23-04-2016 NIDE_RS15515 c7b6f13abb60aa277fffd40e5769fdd3 734 SUPERFAMILY SSF88713 138 156 1.95E-78 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS15515 c7b6f13abb60aa277fffd40e5769fdd3 734 SUPERFAMILY SSF88713 183 452 1.95E-78 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS15515 c7b6f13abb60aa277fffd40e5769fdd3 734 SUPERFAMILY SSF88713 4 90 1.95E-78 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 Gene3D G3DSA:1.10.8.60 325 394 1.2E-23 T 23-04-2016 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 SUPERFAMILY SSF46689 365 460 3.33E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 Pfam PF00158 Sigma-54 interaction domain 153 318 1.7E-67 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 SMART SM00448 18 128 2.9E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 176 189 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 SUPERFAMILY SSF52172 20 196 7.68E-42 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 443 463 1.1E-5 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 426 443 1.1E-5 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 Pfam PF00072 Response regulator receiver domain 20 127 2.9E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 Gene3D G3DSA:1.10.10.60 419 459 8.8E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 SMART SM00382 172 316 3.1E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 238 253 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 Gene3D G3DSA:3.40.50.300 150 324 2.7E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 PANTHER PTHR32071 1 472 6.1E-188 T 23-04-2016 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 SUPERFAMILY SSF52540 152 394 4.83E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 Pfam PF02954 Bacterial regulatory protein, Fis family 419 460 8.7E-13 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS10440 7afc600f7627efa9aaef68b8d01b0c89 472 Gene3D G3DSA:3.40.50.2300 20 139 6.5E-35 T 23-04-2016 NIDE_RS21085 766e62ed78d39a0efcb0702f0e617ef6 238 Gene3D G3DSA:1.10.287.110 16 118 1.6E-30 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS21085 766e62ed78d39a0efcb0702f0e617ef6 238 PANTHER PTHR14021 12 229 1.3E-30 T 23-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 NIDE_RS21085 766e62ed78d39a0efcb0702f0e617ef6 238 PANTHER PTHR14021:SF15 12 229 1.3E-30 T 23-04-2016 NIDE_RS21085 766e62ed78d39a0efcb0702f0e617ef6 238 SUPERFAMILY SSF46565 48 118 1.27E-15 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS21085 766e62ed78d39a0efcb0702f0e617ef6 238 SMART SM00271 47 112 0.0075 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS21085 766e62ed78d39a0efcb0702f0e617ef6 238 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 61 187 7.9E-18 T 23-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 NIDE_RS12115 8f4ddd323651b82171cc04ccf3961c37 361 PANTHER PTHR33529:SF2 4 360 6.7E-70 T 23-04-2016 NIDE_RS12115 8f4ddd323651b82171cc04ccf3961c37 361 Pfam PF03739 Predicted permease YjgP/YjgQ family 8 357 7.4E-78 T 23-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 NIDE_RS12115 8f4ddd323651b82171cc04ccf3961c37 361 PANTHER PTHR33529 4 360 6.7E-70 T 23-04-2016 NIDE_RS07330 5b4cb652f49a6e216d72254e57ae51e3 268 PANTHER PTHR13832 14 254 5.4E-43 T 23-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 NIDE_RS07330 5b4cb652f49a6e216d72254e57ae51e3 268 PANTHER PTHR13832:SF278 14 254 5.4E-43 T 23-04-2016 NIDE_RS07330 5b4cb652f49a6e216d72254e57ae51e3 268 SUPERFAMILY SSF81606 10 257 4.58E-61 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS07330 5b4cb652f49a6e216d72254e57ae51e3 268 SMART SM00331 16 258 1.1E-31 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS07330 5b4cb652f49a6e216d72254e57ae51e3 268 Gene3D G3DSA:3.60.40.10 10 257 4.4E-65 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS07330 5b4cb652f49a6e216d72254e57ae51e3 268 SMART SM00332 2 256 1.4E-25 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS07330 5b4cb652f49a6e216d72254e57ae51e3 268 Pfam PF13672 Protein phosphatase 2C 25 226 1.0E-14 T 23-04-2016 NIDE_RS01555 94a91a375b699597cf8fc253f6b78ac7 107 SUPERFAMILY SSF46955 5 51 6.41E-8 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS01555 94a91a375b699597cf8fc253f6b78ac7 107 Pfam PF12728 Helix-turn-helix domain 5 53 6.6E-11 T 23-04-2016 NIDE_RS01555 94a91a375b699597cf8fc253f6b78ac7 107 Gene3D G3DSA:1.10.10.10 5 55 1.4E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS01555 94a91a375b699597cf8fc253f6b78ac7 107 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 6 51 8.7E-8 T 23-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 NIDE_RS07620 0cb4c59f24b5cbcad678432b8b692ff3 145 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 48 102 6.3E-6 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 NIDE_RS07620 0cb4c59f24b5cbcad678432b8b692ff3 145 SUPERFAMILY SSF56349 47 140 1.53E-13 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS07620 0cb4c59f24b5cbcad678432b8b692ff3 145 Gene3D G3DSA:1.10.150.130 48 140 2.8E-15 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal NIDE_RS18900 385ff70d9392e053bbcc26fe8909d554 136 SMART SM00116 19 66 7.7E-4 T 23-04-2016 IPR000644 CBS domain NIDE_RS18900 385ff70d9392e053bbcc26fe8909d554 136 SMART SM00116 84 131 4.2E-8 T 23-04-2016 IPR000644 CBS domain NIDE_RS18900 385ff70d9392e053bbcc26fe8909d554 136 Gene3D G3DSA:3.10.580.10 15 130 2.5E-28 T 23-04-2016 NIDE_RS18900 385ff70d9392e053bbcc26fe8909d554 136 SUPERFAMILY SSF54631 19 132 7.45E-27 T 23-04-2016 NIDE_RS18900 385ff70d9392e053bbcc26fe8909d554 136 PANTHER PTHR11911 22 130 5.3E-18 T 23-04-2016 NIDE_RS18900 385ff70d9392e053bbcc26fe8909d554 136 Pfam PF00571 CBS domain 78 131 1.2E-11 T 23-04-2016 IPR000644 CBS domain NIDE_RS18900 385ff70d9392e053bbcc26fe8909d554 136 Pfam PF00571 CBS domain 15 64 3.7E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS08355 cb40744f31f91d3b7c7b9e8dff6ea9c7 66 SUPERFAMILY SSF54285 2 64 1.96E-15 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NIDE_RS08355 cb40744f31f91d3b7c7b9e8dff6ea9c7 66 Gene3D G3DSA:3.10.20.30 1 65 1.7E-20 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS08355 cb40744f31f91d3b7c7b9e8dff6ea9c7 66 PANTHER PTHR34472 1 65 3.8E-15 T 23-04-2016 NIDE_RS08355 cb40744f31f91d3b7c7b9e8dff6ea9c7 66 Pfam PF02597 ThiS family 3 65 5.9E-10 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 NIDE_RS08355 cb40744f31f91d3b7c7b9e8dff6ea9c7 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 65 7.3E-17 T 23-04-2016 IPR010035 ThiS, thiamine-biosynthesis NIDE_RS08355 cb40744f31f91d3b7c7b9e8dff6ea9c7 66 PANTHER PTHR34472:SF1 1 65 3.8E-15 T 23-04-2016 NIDE_RS02525 4afd1407821329ba4dda3c5a4dd6410d 677 PANTHER PTHR32552 466 677 3.7E-33 T 23-04-2016 NIDE_RS02525 4afd1407821329ba4dda3c5a4dd6410d 677 PANTHER PTHR32552 7 450 3.7E-33 T 23-04-2016 NIDE_RS02525 4afd1407821329ba4dda3c5a4dd6410d 677 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 174 3.6E-19 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS02525 4afd1407821329ba4dda3c5a4dd6410d 677 Gene3D G3DSA:2.40.170.20 179 660 1.2E-59 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS02525 4afd1407821329ba4dda3c5a4dd6410d 677 Pfam PF00593 TonB dependent receptor 411 659 1.9E-23 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 NIDE_RS02525 4afd1407821329ba4dda3c5a4dd6410d 677 SUPERFAMILY SSF56935 51 661 2.56E-92 T 23-04-2016 NIDE_RS02525 4afd1407821329ba4dda3c5a4dd6410d 677 Gene3D G3DSA:2.170.130.10 64 178 2.0E-30 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS15910 e23a9ed2a77b647bd799ff84aadff1a1 185 Pfam PF07617 Protein of unknown function (DUF1579) 31 183 1.2E-50 T 23-04-2016 IPR011473 Protein of unknown function DUF1579 NIDE_RS04655 ed24742c0d977329a93a806828b63601 232 PANTHER PTHR10657:SF11 212 222 5.8E-22 T 23-04-2016 NIDE_RS04655 ed24742c0d977329a93a806828b63601 232 PANTHER PTHR10657:SF11 1 173 5.8E-22 T 23-04-2016 NIDE_RS04655 ed24742c0d977329a93a806828b63601 232 PANTHER PTHR10657 212 222 5.8E-22 T 23-04-2016 NIDE_RS04655 ed24742c0d977329a93a806828b63601 232 PANTHER PTHR10657 1 173 5.8E-22 T 23-04-2016 NIDE_RS04655 ed24742c0d977329a93a806828b63601 232 Pfam PF13624 SurA N-terminal domain 1 159 1.9E-38 T 23-04-2016 NIDE_RS04655 ed24742c0d977329a93a806828b63601 232 SUPERFAMILY SSF109998 41 201 7.46E-29 T 23-04-2016 IPR027304 Trigger factor/SurA domain NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PIRSF PIRSF000724 1 399 1.7E-149 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 Pfam PF00162 Phosphoglycerate kinase 8 386 3.9E-158 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PANTHER PTHR11406 1 394 4.5E-219 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PRINTS PR00477 Phosphoglycerate kinase family signature 34 56 4.5E-94 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PRINTS PR00477 Phosphoglycerate kinase family signature 194 213 4.5E-94 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PRINTS PR00477 Phosphoglycerate kinase family signature 316 341 4.5E-94 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PRINTS PR00477 Phosphoglycerate kinase family signature 171 193 4.5E-94 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PRINTS PR00477 Phosphoglycerate kinase family signature 12 28 4.5E-94 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PRINTS PR00477 Phosphoglycerate kinase family signature 112 127 4.5E-94 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PRINTS PR00477 Phosphoglycerate kinase family signature 140 162 4.5E-94 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PRINTS PR00477 Phosphoglycerate kinase family signature 372 389 4.5E-94 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 PRINTS PR00477 Phosphoglycerate kinase family signature 349 360 4.5E-94 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 17 27 - T 23-04-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 2 396 41.349 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 Gene3D G3DSA:3.40.50.1270 183 384 7.4E-80 T 23-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 SUPERFAMILY SSF53748 6 396 5.3E-154 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS05105 9f10093882731e520028eb53f667333b 399 Gene3D G3DSA:3.40.50.1260 7 182 1.2E-77 T 23-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 Gene3D G3DSA:3.30.565.10 295 464 1.4E-48 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 Gene3D G3DSA:1.10.287.130 231 294 3.2E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 SMART SM00304 187 240 3.4E-15 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 Pfam PF00672 HAMP domain 168 236 1.6E-19 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 SUPERFAMILY SSF47384 224 308 4.51E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 SUPERFAMILY SSF55874 297 464 3.54E-47 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 SMART SM00387 352 464 2.2E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 2.2E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 461 2.2E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 2.2E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 2.2E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 306 4.2E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 PANTHER PTHR24423 181 465 1.0E-87 T 23-04-2016 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 SMART SM00388 241 307 5.2E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 SUPERFAMILY SSF158472 189 237 3.79E-10 T 23-04-2016 NIDE_RS01400 9a351b0cc76593dbe5500f00e6421465 467 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 463 5.9E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS08680 9d84ca14c58244fb27207f6bcb0566ae 102 Gene3D G3DSA:2.60.300.12 1 89 9.6E-12 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS08680 9d84ca14c58244fb27207f6bcb0566ae 102 SUPERFAMILY SSF89360 1 90 1.16E-12 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS08680 9d84ca14c58244fb27207f6bcb0566ae 102 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 85 9.8E-6 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS02385 a098e1ad8dad6204701747e6b44b6fee 229 PANTHER PTHR10046 1 216 5.2E-20 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 NIDE_RS02385 a098e1ad8dad6204701747e6b44b6fee 229 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 27 215 9.6E-27 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 NIDE_RS02385 a098e1ad8dad6204701747e6b44b6fee 229 SUPERFAMILY SSF88697 26 215 3.98E-40 T 23-04-2016 IPR015947 PUA-like domain NIDE_RS02385 a098e1ad8dad6204701747e6b44b6fee 229 SMART SM00464 26 220 1.0E-13 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 NIDE_RS18625 c6a20d6b0d393fe2ddc4f5a87978d18f 276 SUPERFAMILY SSF52172 155 270 1.32E-30 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS18625 c6a20d6b0d393fe2ddc4f5a87978d18f 276 Gene3D G3DSA:3.40.50.2300 18 145 2.8E-31 T 23-04-2016 NIDE_RS18625 c6a20d6b0d393fe2ddc4f5a87978d18f 276 Gene3D G3DSA:3.40.50.2300 157 270 4.7E-29 T 23-04-2016 NIDE_RS18625 c6a20d6b0d393fe2ddc4f5a87978d18f 276 Pfam PF00072 Response regulator receiver domain 20 128 1.4E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS18625 c6a20d6b0d393fe2ddc4f5a87978d18f 276 Pfam PF00072 Response regulator receiver domain 158 267 5.8E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS18625 c6a20d6b0d393fe2ddc4f5a87978d18f 276 PANTHER PTHR26402 243 260 6.3E-23 T 23-04-2016 NIDE_RS18625 c6a20d6b0d393fe2ddc4f5a87978d18f 276 PANTHER PTHR26402 17 146 6.3E-23 T 23-04-2016 NIDE_RS18625 c6a20d6b0d393fe2ddc4f5a87978d18f 276 SUPERFAMILY SSF52172 17 143 9.96E-31 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS18625 c6a20d6b0d393fe2ddc4f5a87978d18f 276 SMART SM00448 156 267 3.4E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS18625 c6a20d6b0d393fe2ddc4f5a87978d18f 276 SMART SM00448 17 128 5.6E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 PANTHER PTHR23083 83 394 7.0E-42 T 23-04-2016 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 100 179 4.3E-8 T 23-04-2016 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 SUPERFAMILY SSF48452 269 405 1.36E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 Gene3D G3DSA:1.25.40.10 235 406 1.6E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 SUPERFAMILY SSF48452 65 293 8.54E-28 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 Pfam PF14559 Tetratricopeptide repeat 310 376 8.1E-9 T 23-04-2016 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 Pfam PF13432 Tetratricopeptide repeat 237 293 0.0059 T 23-04-2016 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 Gene3D G3DSA:1.25.40.10 88 216 8.8E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 SMART SM00028 367 400 65.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 SMART SM00028 299 332 21.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 SMART SM00028 232 265 81.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 SMART SM00028 120 153 1.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 SMART SM00028 154 187 0.5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS05055 201fed6c2a7a0158754787cfc7521d0a 466 SMART SM00028 86 119 8.7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS11595 082802d01571c502c86c2cc70aefd64f 106 Gene3D G3DSA:2.60.120.10 1 104 7.3E-21 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS11595 082802d01571c502c86c2cc70aefd64f 106 Pfam PF07883 Cupin domain 33 100 2.0E-15 T 23-04-2016 IPR013096 Cupin 2, conserved barrel NIDE_RS11595 082802d01571c502c86c2cc70aefd64f 106 SUPERFAMILY SSF51182 17 103 1.03E-18 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS11455 b028ca1d90947c486a6876186cbb055c 66 Pfam PF10047 Protein of unknown function (DUF2281) 6 44 6.7E-6 T 23-04-2016 IPR018739 Domain of unknown function DUF2281 NIDE_RS09255 8a98f2daba9a132ba44b7ee8acbf5995 227 Pfam PF14326 Domain of unknown function (DUF4384) 88 163 1.4E-17 T 23-04-2016 IPR025493 Domain of unknown function DUF4384 NIDE_RS11890 cc99a6769e2193cf2ce40e59e76e689e 416 PANTHER PTHR10742:SF287 5 415 1.8E-63 T 23-04-2016 NIDE_RS11890 cc99a6769e2193cf2ce40e59e76e689e 416 PANTHER PTHR10742 5 415 1.8E-63 T 23-04-2016 NIDE_RS11890 cc99a6769e2193cf2ce40e59e76e689e 416 Pfam PF01593 Flavin containing amine oxidoreductase 14 413 2.4E-43 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 NIDE_RS11890 cc99a6769e2193cf2ce40e59e76e689e 416 SUPERFAMILY SSF51905 377 414 1.04E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS11890 cc99a6769e2193cf2ce40e59e76e689e 416 SUPERFAMILY SSF51905 1 287 1.04E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS11890 cc99a6769e2193cf2ce40e59e76e689e 416 Gene3D G3DSA:3.50.50.60 4 43 3.2E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS11890 cc99a6769e2193cf2ce40e59e76e689e 416 Gene3D G3DSA:3.50.50.60 204 272 3.2E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS11890 cc99a6769e2193cf2ce40e59e76e689e 416 Gene3D G3DSA:3.50.50.60 376 414 3.2E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS11670 3f1d52f0b64ef13a56d49d8417b2251c 329 Pfam PF01435 Peptidase family M48 97 289 3.3E-42 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 NIDE_RS11670 3f1d52f0b64ef13a56d49d8417b2251c 329 PANTHER PTHR22726 20 297 5.9E-72 T 23-04-2016 NIDE_RS11670 3f1d52f0b64ef13a56d49d8417b2251c 329 Gene3D G3DSA:3.30.2010.10 93 176 3.6E-18 T 23-04-2016 NIDE_RS12120 2d6c3f3a500a5247cfc7726f384db8c1 363 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 360 4.4E-73 T 23-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 NIDE_RS12120 2d6c3f3a500a5247cfc7726f384db8c1 363 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 3 360 2.6E-76 T 23-04-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 NIDE_RS12120 2d6c3f3a500a5247cfc7726f384db8c1 363 PANTHER PTHR33529 1 363 6.7E-67 T 23-04-2016 NIDE_RS00220 a5e09e347d18f4d6bf4c23d94fa3110f 186 PANTHER PTHR23416:SF58 1 185 5.1E-79 T 23-04-2016 NIDE_RS00220 a5e09e347d18f4d6bf4c23d94fa3110f 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 164 1.7E-9 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS00220 a5e09e347d18f4d6bf4c23d94fa3110f 186 PANTHER PTHR23416 1 185 5.1E-79 T 23-04-2016 NIDE_RS00220 a5e09e347d18f4d6bf4c23d94fa3110f 186 SMART SM01266 6 60 1.0E-15 T 23-04-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 NIDE_RS00220 a5e09e347d18f4d6bf4c23d94fa3110f 186 Pfam PF12464 Maltose acetyltransferase 8 59 2.5E-12 T 23-04-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 NIDE_RS00220 a5e09e347d18f4d6bf4c23d94fa3110f 186 SUPERFAMILY SSF51161 3 185 5.68E-52 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS00220 a5e09e347d18f4d6bf4c23d94fa3110f 186 Gene3D G3DSA:2.160.10.10 2 185 1.6E-60 T 23-04-2016 NIDE_RS00220 a5e09e347d18f4d6bf4c23d94fa3110f 186 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 140 168 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 PANTHER PTHR10098:SF104 41 319 5.8E-18 T 23-04-2016 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 PANTHER PTHR10098 41 319 5.8E-18 T 23-04-2016 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 Gene3D G3DSA:1.25.40.10 49 148 8.3E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 Gene3D G3DSA:1.25.40.10 149 316 1.8E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 SMART SM00028 165 198 430.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 SMART SM00028 45 78 21.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 SMART SM00028 285 318 37.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 SMART SM00028 125 158 430.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 SMART SM00028 205 238 130.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 SUPERFAMILY SSF48452 150 320 3.14E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS16730 3ba291feaa6a1b1575e9573abe33032f 326 SUPERFAMILY SSF48452 44 196 1.26E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 3.9E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.9E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.9E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.9E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.9E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.9E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.5E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.5E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.5E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 SUPERFAMILY SSF51735 7 252 4.09E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 Gene3D G3DSA:3.40.50.720 4 252 5.3E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PANTHER PTHR24322 11 137 1.2E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 PANTHER PTHR24322 155 191 1.2E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR NIDE_RS09740 21a609cfc9e8010f2ca84449b7a4198e 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 250 5.9E-50 T 23-04-2016 NIDE_RS03320 a7ae7e70bd9c76f81b82f42d2da7d7bc 114 Gene3D G3DSA:3.30.1050.10 9 112 1.4E-25 T 23-04-2016 IPR003033 SCP2 sterol-binding domain NIDE_RS03320 a7ae7e70bd9c76f81b82f42d2da7d7bc 114 SUPERFAMILY SSF55718 8 111 8.41E-26 T 23-04-2016 IPR003033 SCP2 sterol-binding domain NIDE_RS03320 a7ae7e70bd9c76f81b82f42d2da7d7bc 114 Pfam PF02036 SCP-2 sterol transfer family 21 109 1.5E-19 T 23-04-2016 IPR003033 SCP2 sterol-binding domain NIDE_RS03320 a7ae7e70bd9c76f81b82f42d2da7d7bc 114 PANTHER PTHR10094 21 114 6.5E-15 T 23-04-2016 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 SUPERFAMILY SSF52540 327 466 1.13E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 SUPERFAMILY SSF52540 10 205 1.13E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 295 819 3.7E-272 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 PANTHER PTHR32282:SF2 1 832 0.0 T 23-04-2016 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 Pfam PF00005 ABC transporter 700 754 1.4E-5 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 ProSitePatterns PS00211 ABC transporters family signature. 724 738 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 Gene3D G3DSA:3.40.50.300 375 493 1.5E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 Gene3D G3DSA:3.40.50.300 502 562 1.9E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 Gene3D G3DSA:3.40.50.300 5 52 1.5E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 Gene3D G3DSA:3.40.50.300 715 833 1.9E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 Gene3D G3DSA:1.20.1580.10 588 714 2.1E-54 T 23-04-2016 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 Gene3D G3DSA:3.30.1490.20 131 154 3.3E-23 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 Gene3D G3DSA:3.30.1490.20 201 250 3.3E-23 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 PANTHER PTHR32282 1 832 0.0 T 23-04-2016 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 Gene3D G3DSA:1.20.1580.10 92 130 2.3E-57 T 23-04-2016 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 Gene3D G3DSA:1.20.1580.10 251 374 2.3E-57 T 23-04-2016 NIDE_RS02635 d673549f413d2fed7636046b08c1603a 835 SUPERFAMILY SSF52540 510 804 5.65E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS06925 7db08b6d0a27399061def2237e4d04e2 124 Pfam PF07238 PilZ domain 13 116 1.0E-9 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS06925 7db08b6d0a27399061def2237e4d04e2 124 Gene3D G3DSA:2.40.10.220 43 117 6.3E-6 T 23-04-2016 NIDE_RS06925 7db08b6d0a27399061def2237e4d04e2 124 SUPERFAMILY SSF141371 11 118 1.35E-11 T 23-04-2016 NIDE_RS02415 16d0c9e916679aaf874e1290633e386d 210 PANTHER PTHR12697:SF5 121 210 2.8E-12 T 23-04-2016 NIDE_RS02415 16d0c9e916679aaf874e1290633e386d 210 SUPERFAMILY SSF48371 57 209 3.13E-16 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS02415 16d0c9e916679aaf874e1290633e386d 210 Gene3D G3DSA:1.25.10.10 102 209 1.2E-15 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS02415 16d0c9e916679aaf874e1290633e386d 210 Pfam PF13646 HEAT repeats 123 206 5.0E-13 T 23-04-2016 NIDE_RS02415 16d0c9e916679aaf874e1290633e386d 210 PANTHER PTHR12697 121 210 2.8E-12 T 23-04-2016 NIDE_RS02415 16d0c9e916679aaf874e1290633e386d 210 SMART SM00567 E-Z type HEAT repeats 133 162 8.8E-4 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS02415 16d0c9e916679aaf874e1290633e386d 210 SMART SM00567 E-Z type HEAT repeats 164 193 320.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS20025 3c3eb774b2a901bba98a712ce63ab92d 133 Pfam PF01850 PIN domain 2 118 6.5E-6 T 23-04-2016 IPR002716 PIN domain NIDE_RS20025 3c3eb774b2a901bba98a712ce63ab92d 133 Gene3D G3DSA:3.40.50.1010 1 126 7.8E-24 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS20025 3c3eb774b2a901bba98a712ce63ab92d 133 SUPERFAMILY SSF88723 1 122 1.37E-14 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS13870 f16531e5f708098f4056ee1301daa409 714 PANTHER PTHR10342 297 548 3.3E-41 T 23-04-2016 NIDE_RS13870 f16531e5f708098f4056ee1301daa409 714 PANTHER PTHR10342 570 622 3.3E-41 T 23-04-2016 NIDE_RS13870 f16531e5f708098f4056ee1301daa409 714 SUPERFAMILY SSF53649 324 627 8.83E-50 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 NIDE_RS13870 f16531e5f708098f4056ee1301daa409 714 PANTHER PTHR10342:SF236 297 548 3.3E-41 T 23-04-2016 NIDE_RS13870 f16531e5f708098f4056ee1301daa409 714 PANTHER PTHR10342:SF236 570 622 3.3E-41 T 23-04-2016 NIDE_RS13870 f16531e5f708098f4056ee1301daa409 714 Pfam PF00884 Sulfatase 324 606 4.7E-44 T 23-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 NIDE_RS13870 f16531e5f708098f4056ee1301daa409 714 Gene3D G3DSA:3.40.720.10 324 622 1.9E-40 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 NIDE_RS20950 6b8008cddaa168c476fa151759df4dc8 179 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 31 1.1E-10 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS20950 6b8008cddaa168c476fa151759df4dc8 179 Gene3D G3DSA:3.30.700.10 11 81 2.1E-17 T 23-04-2016 NIDE_RS20950 6b8008cddaa168c476fa151759df4dc8 179 PANTHER PTHR30093 1 86 2.8E-22 T 23-04-2016 NIDE_RS20950 6b8008cddaa168c476fa151759df4dc8 179 SUPERFAMILY SSF54523 11 95 7.22E-21 T 23-04-2016 NIDE_RS20950 6b8008cddaa168c476fa151759df4dc8 179 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS20950 6b8008cddaa168c476fa151759df4dc8 179 Pfam PF13633 Prokaryotic N-terminal methylation site 8 33 1.6E-12 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS16670 ac9e8fb0ce8da8020912fb270fe83055 271 Gene3D G3DSA:1.10.760.10 159 269 2.7E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16670 ac9e8fb0ce8da8020912fb270fe83055 271 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 50 147 5.1E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16670 ac9e8fb0ce8da8020912fb270fe83055 271 Pfam PF00034 Cytochrome c 171 266 2.8E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16670 ac9e8fb0ce8da8020912fb270fe83055 271 Gene3D G3DSA:1.10.760.10 22 150 7.9E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16670 ac9e8fb0ce8da8020912fb270fe83055 271 SUPERFAMILY SSF46626 225 268 9.46E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16670 ac9e8fb0ce8da8020912fb270fe83055 271 SUPERFAMILY SSF46626 156 194 9.46E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS16670 ac9e8fb0ce8da8020912fb270fe83055 271 SUPERFAMILY SSF46626 34 157 4.73E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS14345 26df6159c1796028e5743ebacf3ea89f 636 SUPERFAMILY SSF56645 52 299 2.36E-50 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 NIDE_RS14345 26df6159c1796028e5743ebacf3ea89f 636 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 51 156 2.0E-18 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 NIDE_RS14345 26df6159c1796028e5743ebacf3ea89f 636 Gene3D G3DSA:1.10.540.10 44 156 4.3E-26 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 NIDE_RS14345 26df6159c1796028e5743ebacf3ea89f 636 Gene3D G3DSA:2.40.110.10 160 276 1.1E-30 T 23-04-2016 NIDE_RS14345 26df6159c1796028e5743ebacf3ea89f 636 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 288 446 2.5E-26 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 NIDE_RS14345 26df6159c1796028e5743ebacf3ea89f 636 SUPERFAMILY SSF47203 288 447 8.86E-34 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 NIDE_RS14345 26df6159c1796028e5743ebacf3ea89f 636 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 161 276 3.1E-16 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 NIDE_RS14345 26df6159c1796028e5743ebacf3ea89f 636 PANTHER PTHR10909:SF121 51 477 1.6E-96 T 23-04-2016 NIDE_RS14345 26df6159c1796028e5743ebacf3ea89f 636 PANTHER PTHR10909 51 477 1.6E-96 T 23-04-2016 NIDE_RS14345 26df6159c1796028e5743ebacf3ea89f 636 Gene3D G3DSA:1.20.140.10 277 451 9.3E-45 T 23-04-2016 NIDE_RS00420 8ef5fae9d8b1e7794b192a743e5c4574 154 Gene3D G3DSA:3.30.420.10 4 146 1.2E-11 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS00420 8ef5fae9d8b1e7794b192a743e5c4574 154 SUPERFAMILY SSF53098 4 149 1.06E-30 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS04470 9ed7ea370ce8814923451886ffc63d15 137 PIRSF PIRSF016498 10 137 5.6E-28 T 23-04-2016 IPR018699 Protein of unknown function DUF2203 NIDE_RS04470 9ed7ea370ce8814923451886ffc63d15 137 Pfam PF09969 Uncharacterized conserved protein (DUF2203) 11 132 4.1E-35 T 23-04-2016 IPR018699 Protein of unknown function DUF2203 NIDE_RS14000 27f8b1375b719823c6277e4af29013fb 227 Gene3D G3DSA:3.60.20.10 4 226 2.1E-70 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS14000 27f8b1375b719823c6277e4af29013fb 227 PANTHER PTHR11599:SF38 24 225 1.6E-18 T 23-04-2016 NIDE_RS14000 27f8b1375b719823c6277e4af29013fb 227 Pfam PF00227 Proteasome subunit 25 204 2.2E-27 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 NIDE_RS14000 27f8b1375b719823c6277e4af29013fb 227 TIGRFAM TIGR03691 20S_bact_alpha: proteasome, alpha subunit 1 226 7.8E-88 T 23-04-2016 IPR022296 Proteasome, alpha subunit, bacterial GO:0004298|GO:0019773|GO:0051603 UniPathway: UPA00997 NIDE_RS14000 27f8b1375b719823c6277e4af29013fb 227 SUPERFAMILY SSF56235 10 225 1.71E-38 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS14000 27f8b1375b719823c6277e4af29013fb 227 PANTHER PTHR11599 24 225 1.6E-18 T 23-04-2016 NIDE_RS20030 decee91f4cd09a700051c77544ba0cd6 80 Gene3D G3DSA:1.10.1220.10 9 42 2.7E-6 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 NIDE_RS20030 decee91f4cd09a700051c77544ba0cd6 80 SUPERFAMILY SSF47598 2 44 2.0E-10 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 NIDE_RS12900 64525ddf28fc812e93dacbd52f3a9973 198 Pfam PF11845 Protein of unknown function (DUF3365) 18 195 1.2E-18 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS10130 898bd8e807a992c53da594c55d1fb42d 240 PANTHER PTHR31284:SF10 1 180 5.8E-52 T 23-04-2016 NIDE_RS10130 898bd8e807a992c53da594c55d1fb42d 240 PANTHER PTHR31284:SF10 198 214 5.8E-52 T 23-04-2016 NIDE_RS10130 898bd8e807a992c53da594c55d1fb42d 240 PIRSF PIRSF019271 1 233 3.7E-61 T 23-04-2016 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 NIDE_RS10130 898bd8e807a992c53da594c55d1fb42d 240 PANTHER PTHR31284 1 180 5.8E-52 T 23-04-2016 NIDE_RS10130 898bd8e807a992c53da594c55d1fb42d 240 PANTHER PTHR31284 198 214 5.8E-52 T 23-04-2016 NIDE_RS10130 898bd8e807a992c53da594c55d1fb42d 240 SUPERFAMILY SSF56784 44 218 2.21E-34 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS10130 898bd8e807a992c53da594c55d1fb42d 240 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 29 214 1.4E-41 T 23-04-2016 IPR005519 Acid phosphatase, class B-like NIDE_RS10130 898bd8e807a992c53da594c55d1fb42d 240 Gene3D G3DSA:3.40.50.1000 2 218 1.2E-50 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS16225 e6a67e7c3d0f49a55d1ec690757a0e93 106 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 2 49 2.1E-8 T 23-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 NIDE_RS16225 e6a67e7c3d0f49a55d1ec690757a0e93 106 Gene3D G3DSA:1.10.10.10 1 50 3.0E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16225 e6a67e7c3d0f49a55d1ec690757a0e93 106 SUPERFAMILY SSF46955 1 51 1.83E-8 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS16225 e6a67e7c3d0f49a55d1ec690757a0e93 106 Pfam PF12728 Helix-turn-helix domain 2 50 8.1E-11 T 23-04-2016 NIDE_RS17410 b03a3e9823579a3e12e18ce6ddd8c847 145 SUPERFAMILY SSF46626 14 138 5.4E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17410 b03a3e9823579a3e12e18ce6ddd8c847 145 Gene3D G3DSA:1.10.760.10 7 135 6.5E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17410 b03a3e9823579a3e12e18ce6ddd8c847 145 Pfam PF00034 Cytochrome c 39 133 3.9E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS19495 f7776bc2e2f80e2f093ce2a13a0de913 166 Pfam PF07603 Protein of unknown function (DUF1566) 49 160 6.0E-21 T 23-04-2016 IPR011460 Protein of unknown function DUF1566 NIDE_RS20625 3e71ffa033a7121048c110c2280dcbe5 253 Pfam PF00483 Nucleotidyl transferase 10 183 3.0E-23 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 NIDE_RS20625 3e71ffa033a7121048c110c2280dcbe5 253 Gene3D G3DSA:3.90.550.10 9 229 5.1E-50 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20625 3e71ffa033a7121048c110c2280dcbe5 253 SUPERFAMILY SSF53448 9 236 7.09E-49 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS20625 3e71ffa033a7121048c110c2280dcbe5 253 PANTHER PTHR22572 9 227 2.2E-44 T 23-04-2016 NIDE_RS01995 b0bbae89c0803c3f315e61ee645a88c0 397 PANTHER PTHR15498:SF50 50 354 1.1E-41 T 23-04-2016 NIDE_RS01995 b0bbae89c0803c3f315e61ee645a88c0 397 PANTHER PTHR15498 50 354 1.1E-41 T 23-04-2016 NIDE_RS01995 b0bbae89c0803c3f315e61ee645a88c0 397 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 207 269 1.6E-13 T 23-04-2016 NIDE_RS01995 b0bbae89c0803c3f315e61ee645a88c0 397 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 110 170 3.2E-10 T 23-04-2016 NIDE_RS01995 b0bbae89c0803c3f315e61ee645a88c0 397 Gene3D G3DSA:2.130.10.130 54 179 6.4E-19 T 23-04-2016 NIDE_RS01995 b0bbae89c0803c3f315e61ee645a88c0 397 Gene3D G3DSA:2.130.10.130 180 379 1.9E-16 T 23-04-2016 NIDE_RS01995 b0bbae89c0803c3f315e61ee645a88c0 397 SUPERFAMILY SSF69318 39 346 1.57E-50 T 23-04-2016 NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 Gene3D G3DSA:3.40.50.1820 364 694 1.4E-81 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 SUPERFAMILY SSF53474 441 694 6.87E-72 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 PANTHER PTHR11731 59 179 1.9E-88 T 23-04-2016 NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 PANTHER PTHR11731 338 694 1.9E-88 T 23-04-2016 NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 PANTHER PTHR11731:SF140 59 179 1.9E-88 T 23-04-2016 NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 PANTHER PTHR11731:SF140 338 694 1.9E-88 T 23-04-2016 NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 Gene3D G3DSA:2.120.10.30 80 147 4.4E-5 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 Gene3D G3DSA:2.120.10.30 218 323 4.4E-5 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 SUPERFAMILY SSF82171 263 428 2.75E-8 T 23-04-2016 NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 SUPERFAMILY SSF82171 80 136 2.75E-8 T 23-04-2016 NIDE_RS09930 320c8f622f8a174f43f3f2ecd61e27fb 695 Pfam PF00326 Prolyl oligopeptidase family 485 694 8.1E-44 T 23-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 Gene3D G3DSA:3.40.50.300 592 772 3.7E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 SUPERFAMILY SSF52540 592 777 1.91E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 593 765 2.0E-10 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 PANTHER PTHR32309:SF13 554 784 2.8E-87 T 23-04-2016 NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 PANTHER PTHR32309:SF13 348 498 2.8E-87 T 23-04-2016 NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 PANTHER PTHR32309:SF13 10 322 2.8E-87 T 23-04-2016 NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 Pfam PF02706 Chain length determinant protein 11 152 1.7E-5 T 23-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 PANTHER PTHR32309 554 784 2.8E-87 T 23-04-2016 NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 PANTHER PTHR32309 348 498 2.8E-87 T 23-04-2016 NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 PANTHER PTHR32309 10 322 2.8E-87 T 23-04-2016 NIDE_RS13250 e1bc5ac68b82a4750a8f326c9d2851df 784 Pfam PF13807 G-rich domain on putative tyrosine kinase 386 464 7.5E-9 T 23-04-2016 IPR032807 Tyrosine kinase, G-rich domain NIDE_RS13670 35c95b06cd259a1ea17b2e04c571b4c1 394 PANTHER PTHR12526:SF380 4 305 2.8E-40 T 23-04-2016 NIDE_RS13670 35c95b06cd259a1ea17b2e04c571b4c1 394 Gene3D G3DSA:3.40.50.2000 202 350 2.6E-13 T 23-04-2016 NIDE_RS13670 35c95b06cd259a1ea17b2e04c571b4c1 394 Pfam PF13439 Glycosyltransferase Family 4 56 190 9.1E-7 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS13670 35c95b06cd259a1ea17b2e04c571b4c1 394 SUPERFAMILY SSF53756 5 373 3.72E-48 T 23-04-2016 NIDE_RS13670 35c95b06cd259a1ea17b2e04c571b4c1 394 PANTHER PTHR12526 4 305 2.8E-40 T 23-04-2016 NIDE_RS13670 35c95b06cd259a1ea17b2e04c571b4c1 394 Pfam PF00534 Glycosyl transferases group 1 196 356 6.0E-22 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS18365 bbcad795e6b6bf7ce6cc902525e63caa 70 PANTHER PTHR37532:SF1 1 70 1.8E-29 T 23-04-2016 NIDE_RS18365 bbcad795e6b6bf7ce6cc902525e63caa 70 Gene3D G3DSA:1.10.10.600 1 66 7.5E-32 T 23-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 NIDE_RS18365 bbcad795e6b6bf7ce6cc902525e63caa 70 PANTHER PTHR37532 1 70 1.8E-29 T 23-04-2016 NIDE_RS18365 bbcad795e6b6bf7ce6cc902525e63caa 70 Pfam PF04384 Iron-sulphur cluster assembly 3 66 2.6E-31 T 23-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 NIDE_RS18365 bbcad795e6b6bf7ce6cc902525e63caa 70 SUPERFAMILY SSF140319 3 65 1.31E-25 T 23-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 NIDE_RS18365 bbcad795e6b6bf7ce6cc902525e63caa 70 PIRSF PIRSF039003 3 66 1.8E-31 T 23-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 NIDE_RS18365 bbcad795e6b6bf7ce6cc902525e63caa 70 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 65 2.4E-30 T 23-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 NIDE_RS10575 cabe3fafbdcc878fef02e6ed0d7a734c 255 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 141 9.6E-38 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G NIDE_RS10575 cabe3fafbdcc878fef02e6ed0d7a734c 255 PANTHER PTHR30435 1 251 3.2E-53 T 23-04-2016 NIDE_RS10575 cabe3fafbdcc878fef02e6ed0d7a734c 255 Pfam PF00460 Flagella basal body rod protein 10 35 8.3E-7 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 NIDE_RS10575 cabe3fafbdcc878fef02e6ed0d7a734c 255 PANTHER PTHR30435:SF18 1 251 3.2E-53 T 23-04-2016 NIDE_RS10575 cabe3fafbdcc878fef02e6ed0d7a734c 255 SUPERFAMILY SSF117143 97 212 2.09E-17 T 23-04-2016 NIDE_RS10575 cabe3fafbdcc878fef02e6ed0d7a734c 255 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 187 249 7.1E-16 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain NIDE_RS05520 f92744dec98ae9c34c0987f19c1dfb09 264 PANTHER PTHR20858 2 259 2.9E-122 T 23-04-2016 NIDE_RS05520 f92744dec98ae9c34c0987f19c1dfb09 264 SUPERFAMILY SSF53613 1 260 7.95E-84 T 23-04-2016 IPR029056 Ribokinase-like NIDE_RS05520 f92744dec98ae9c34c0987f19c1dfb09 264 Pfam PF08543 Phosphomethylpyrimidine kinase 12 256 8.1E-100 T 23-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 NIDE_RS05520 f92744dec98ae9c34c0987f19c1dfb09 264 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 5 258 5.4E-107 T 23-04-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 NIDE_RS05520 f92744dec98ae9c34c0987f19c1dfb09 264 Gene3D G3DSA:3.40.1190.20 3 258 9.8E-106 T 23-04-2016 IPR029056 Ribokinase-like NIDE_RS05520 f92744dec98ae9c34c0987f19c1dfb09 264 PANTHER PTHR20858:SF17 2 259 2.9E-122 T 23-04-2016 NIDE_RS00395 37a58817d8e2615b8160f7660c3a58d7 284 Pfam PF10546 P63C domain 153 238 2.2E-25 T 23-04-2016 IPR018874 Bacteriophage Mx8, p63, C-terminal NIDE_RS10170 69e27d3652bd3302869e0b844d548a66 433 Gene3D G3DSA:2.60.40.10 238 315 1.2E-4 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS10170 69e27d3652bd3302869e0b844d548a66 433 Pfam PF14065 Protein of unknown function (DUF4255) 10 212 1.6E-50 T 23-04-2016 IPR025351 Protein of unknown function DUF4255 NIDE_RS04035 3a146becd56b0874536ee6542987de9f 474 Pfam PF03023 MviN-like protein 57 456 9.0E-28 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS17880 35c63a3ef2157dc28a072c461011e7de 158 SUPERFAMILY SSF47175 44 151 7.65E-9 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 NIDE_RS17880 35c63a3ef2157dc28a072c461011e7de 158 Gene3D G3DSA:1.20.120.10 102 150 1.1E-4 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 NIDE_RS01625 3ffa17a799538237f533d40b09f04086 361 SUPERFAMILY SSF53067 83 356 2.18E-54 T 23-04-2016 NIDE_RS01625 3ffa17a799538237f533d40b09f04086 361 SUPERFAMILY SSF53067 1 51 2.18E-54 T 23-04-2016 NIDE_RS01625 3ffa17a799538237f533d40b09f04086 361 Gene3D G3DSA:3.40.367.20 130 338 1.1E-69 T 23-04-2016 NIDE_RS01625 3ffa17a799538237f533d40b09f04086 361 PANTHER PTHR30514 89 359 1.2E-85 T 23-04-2016 NIDE_RS01625 3ffa17a799538237f533d40b09f04086 361 PANTHER PTHR30514 1 70 1.2E-85 T 23-04-2016 NIDE_RS01625 3ffa17a799538237f533d40b09f04086 361 TIGRFAM TIGR00749 glk: glucokinase 83 349 6.5E-79 T 23-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 NIDE_RS01625 3ffa17a799538237f533d40b09f04086 361 Pfam PF02685 Glucokinase 3 354 7.5E-105 T 23-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 NIDE_RS01625 3ffa17a799538237f533d40b09f04086 361 PANTHER PTHR30514:SF0 89 359 1.2E-85 T 23-04-2016 NIDE_RS01625 3ffa17a799538237f533d40b09f04086 361 PANTHER PTHR30514:SF0 1 70 1.2E-85 T 23-04-2016 NIDE_RS15790 e48f1ee03985177367f7e845ea13cf2c 173 SUPERFAMILY SSF46626 68 163 7.28E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15790 e48f1ee03985177367f7e845ea13cf2c 173 Gene3D G3DSA:1.10.760.10 67 163 8.7E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS06150 d905ab841c995d6b72a4012be77afef2 167 Pfam PF03719 Ribosomal protein S5, C-terminal domain 86 156 1.7E-24 T 23-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 NIDE_RS06150 d905ab841c995d6b72a4012be77afef2 167 SUPERFAMILY SSF54768 8 75 1.78E-22 T 23-04-2016 NIDE_RS06150 d905ab841c995d6b72a4012be77afef2 167 Gene3D G3DSA:3.30.160.20 9 72 2.4E-28 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain NIDE_RS06150 d905ab841c995d6b72a4012be77afef2 167 ProSitePatterns PS00585 Ribosomal protein S5 signature. 27 59 - T 23-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site NIDE_RS06150 d905ab841c995d6b72a4012be77afef2 167 SUPERFAMILY SSF54211 78 156 5.56E-23 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS06150 d905ab841c995d6b72a4012be77afef2 167 Gene3D G3DSA:3.30.230.10 74 156 2.5E-27 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS06150 d905ab841c995d6b72a4012be77afef2 167 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 9 158 9.2E-61 T 23-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 NIDE_RS06150 d905ab841c995d6b72a4012be77afef2 167 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 3 165 32.846 T 23-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 NIDE_RS06150 d905ab841c995d6b72a4012be77afef2 167 Pfam PF00333 Ribosomal protein S5, N-terminal domain 10 74 1.6E-27 T 23-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 NIDE_RS06150 d905ab841c995d6b72a4012be77afef2 167 PANTHER PTHR13718 9 156 2.6E-55 T 23-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 NIDE_RS09905 fe19f43ff835687f6e8313c9089b4357 359 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 351 9.0E-77 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS09905 fe19f43ff835687f6e8313c9089b4357 359 Pfam PF00529 HlyD membrane-fusion protein of T1SS 11 337 1.8E-7 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS09905 fe19f43ff835687f6e8313c9089b4357 359 PANTHER PTHR30469:SF11 1 351 2.7E-87 T 23-04-2016 NIDE_RS09905 fe19f43ff835687f6e8313c9089b4357 359 PANTHER PTHR30469 1 351 2.7E-87 T 23-04-2016 NIDE_RS09905 fe19f43ff835687f6e8313c9089b4357 359 Gene3D G3DSA:2.40.50.100 71 104 5.0E-15 T 23-04-2016 NIDE_RS09905 fe19f43ff835687f6e8313c9089b4357 359 Gene3D G3DSA:2.40.50.100 167 197 5.0E-15 T 23-04-2016 NIDE_RS09905 fe19f43ff835687f6e8313c9089b4357 359 SUPERFAMILY SSF111369 59 280 1.96E-43 T 23-04-2016 NIDE_RS09905 fe19f43ff835687f6e8313c9089b4357 359 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 273 1.5E-35 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS08375 45a962307728c05c0916c602f6abcde5 254 Gene3D G3DSA:3.30.460.10 13 122 2.3E-5 T 23-04-2016 NIDE_RS08375 45a962307728c05c0916c602f6abcde5 254 SUPERFAMILY SSF81301 11 127 1.82E-6 T 23-04-2016 NIDE_RS04445 09e53a83b741970646d10b1860bfe992 235 PANTHER PTHR32154 4 225 5.4E-68 T 23-04-2016 NIDE_RS04445 09e53a83b741970646d10b1860bfe992 235 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 14 177 1.9E-34 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 NIDE_RS04445 09e53a83b741970646d10b1860bfe992 235 PANTHER PTHR32154:SF2 4 225 5.4E-68 T 23-04-2016 NIDE_RS04445 09e53a83b741970646d10b1860bfe992 235 SUPERFAMILY SSF53323 5 218 1.57E-32 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 NIDE_RS04445 09e53a83b741970646d10b1860bfe992 235 Gene3D G3DSA:3.40.920.10 4 218 1.9E-51 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 NIDE_RS04445 09e53a83b741970646d10b1860bfe992 235 TIGRFAM TIGR02175 PorC_KorC: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family 6 179 6.2E-34 T 23-04-2016 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0055114 NIDE_RS20225 5242a10e818c8bf7d17d6a569e198e01 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.3E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NIDE_RS20225 5242a10e818c8bf7d17d6a569e198e01 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.3E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NIDE_RS20225 5242a10e818c8bf7d17d6a569e198e01 215 SUPERFAMILY SSF48498 99 201 1.1E-10 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal NIDE_RS20225 5242a10e818c8bf7d17d6a569e198e01 215 PANTHER PTHR30055 2 181 1.1E-19 T 23-04-2016 NIDE_RS20225 5242a10e818c8bf7d17d6a569e198e01 215 SUPERFAMILY SSF46689 9 68 2.0E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS20225 5242a10e818c8bf7d17d6a569e198e01 215 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 61 - T 23-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site NIDE_RS20225 5242a10e818c8bf7d17d6a569e198e01 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 3.1E-15 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 NIDE_RS20225 5242a10e818c8bf7d17d6a569e198e01 215 Gene3D G3DSA:1.10.357.10 8 205 8.8E-34 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 NIDE_RS11930 fd4b3ab83bf924c5f6ea9563d10c67ef 215 Pfam PF11845 Protein of unknown function (DUF3365) 26 176 4.5E-11 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS19460 57d303f2c28501f8e713bd28b95f4068 309 Gene3D G3DSA:2.60.40.1120 217 267 1.8E-9 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain NIDE_RS19460 57d303f2c28501f8e713bd28b95f4068 309 Pfam PF14686 Polysaccharide lyase family 4, domain II 219 264 4.3E-8 T 23-04-2016 IPR029413 Rhamnogalacturonan lyase, domain II NIDE_RS19460 57d303f2c28501f8e713bd28b95f4068 309 SUPERFAMILY SSF49452 216 266 3.33E-10 T 23-04-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 NIDE_RS12420 59b69bd01f156f739dae41cec506f67b 459 PANTHER PTHR11206:SF90 233 444 6.8E-24 T 23-04-2016 NIDE_RS12420 59b69bd01f156f739dae41cec506f67b 459 PANTHER PTHR11206:SF90 86 102 6.8E-24 T 23-04-2016 NIDE_RS12420 59b69bd01f156f739dae41cec506f67b 459 PANTHER PTHR11206 233 444 6.8E-24 T 23-04-2016 NIDE_RS12420 59b69bd01f156f739dae41cec506f67b 459 PANTHER PTHR11206 86 102 6.8E-24 T 23-04-2016 NIDE_RS12420 59b69bd01f156f739dae41cec506f67b 459 PRINTS PR01806 Virulence factor MviN signature 425 442 4.9E-16 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS12420 59b69bd01f156f739dae41cec506f67b 459 PRINTS PR01806 Virulence factor MviN signature 275 301 4.9E-16 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS12420 59b69bd01f156f739dae41cec506f67b 459 PRINTS PR01806 Virulence factor MviN signature 151 175 4.9E-16 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS12420 59b69bd01f156f739dae41cec506f67b 459 PRINTS PR01806 Virulence factor MviN signature 175 196 4.9E-16 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS12420 59b69bd01f156f739dae41cec506f67b 459 PRINTS PR01806 Virulence factor MviN signature 54 73 4.9E-16 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS12420 59b69bd01f156f739dae41cec506f67b 459 Pfam PF03023 MviN-like protein 49 449 8.6E-63 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ NIDE_RS17195 b294dc4a6090b3042b5fd8d815dc29fc 253 SUPERFAMILY SSF53955 40 123 6.38E-9 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS17195 b294dc4a6090b3042b5fd8d815dc29fc 253 Gene3D G3DSA:1.10.530.10 36 240 3.1E-8 T 23-04-2016 NIDE_RS17195 b294dc4a6090b3042b5fd8d815dc29fc 253 Pfam PF01464 Transglycosylase SLT domain 68 125 4.7E-6 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 NIDE_RS07880 144f5f0ca5a63f23fbb93443919ba207 297 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 57 86 7.9E-4 T 23-04-2016 IPR006530 YD repeat NIDE_RS07880 144f5f0ca5a63f23fbb93443919ba207 297 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 128 157 0.0026 T 23-04-2016 IPR006530 YD repeat NIDE_RS07880 144f5f0ca5a63f23fbb93443919ba207 297 Pfam PF05593 RHS Repeat 57 87 5.2E-6 T 23-04-2016 IPR031325 RHS repeat NIDE_RS07880 144f5f0ca5a63f23fbb93443919ba207 297 Pfam PF05593 RHS Repeat 128 159 2.5E-7 T 23-04-2016 IPR031325 RHS repeat NIDE_RS12330 eae9a131c4cd77a2180e5ff2a4fc5dfd 235 PANTHER PTHR23416 94 208 1.7E-14 T 23-04-2016 NIDE_RS12330 eae9a131c4cd77a2180e5ff2a4fc5dfd 235 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 124 157 2.9E-7 T 23-04-2016 IPR001451 Hexapeptide repeat NIDE_RS12330 eae9a131c4cd77a2180e5ff2a4fc5dfd 235 Gene3D G3DSA:3.40.50.20 2 93 5.9E-12 T 23-04-2016 IPR016185 Pre-ATP-grasp domain NIDE_RS12330 eae9a131c4cd77a2180e5ff2a4fc5dfd 235 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 6 208 1.7E-52 T 23-04-2016 IPR020019 Sialic acid O-acyltransferase NeuD-like NIDE_RS12330 eae9a131c4cd77a2180e5ff2a4fc5dfd 235 Gene3D G3DSA:2.160.10.10 94 216 1.4E-29 T 23-04-2016 NIDE_RS12330 eae9a131c4cd77a2180e5ff2a4fc5dfd 235 SUPERFAMILY SSF51161 3 213 4.85E-37 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS08615 c247ff3110ff1a958a5a64cd93625bfe 389 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 132 360 1.8E-24 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 NIDE_RS08615 c247ff3110ff1a958a5a64cd93625bfe 389 SUPERFAMILY SSF54966 9 119 1.83E-12 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 NIDE_RS08615 c247ff3110ff1a958a5a64cd93625bfe 389 PANTHER PTHR23321 58 254 4.1E-28 T 23-04-2016 NIDE_RS08615 c247ff3110ff1a958a5a64cd93625bfe 389 SUPERFAMILY SSF51649 125 383 1.44E-57 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 NIDE_RS08615 c247ff3110ff1a958a5a64cd93625bfe 389 Gene3D G3DSA:3.30.70.150 11 118 8.2E-7 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 NIDE_RS08615 c247ff3110ff1a958a5a64cd93625bfe 389 Gene3D G3DSA:3.20.20.110 125 383 3.5E-49 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 NIDE_RS08615 c247ff3110ff1a958a5a64cd93625bfe 389 PANTHER PTHR23321:SF19 58 254 4.1E-28 T 23-04-2016 NIDE_RS04480 0cd1a74f20886aed9f3da911101574db 68 PRINTS PR01249 Ribosomal protein L31 signature 2 19 6.0E-22 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS04480 0cd1a74f20886aed9f3da911101574db 68 PRINTS PR01249 Ribosomal protein L31 signature 30 45 6.0E-22 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS04480 0cd1a74f20886aed9f3da911101574db 68 PRINTS PR01249 Ribosomal protein L31 signature 45 63 6.0E-22 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS04480 0cd1a74f20886aed9f3da911101574db 68 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 4.2E-32 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS04480 0cd1a74f20886aed9f3da911101574db 68 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 67 30.16 T 23-04-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS04480 0cd1a74f20886aed9f3da911101574db 68 Pfam PF01197 Ribosomal protein L31 1 64 3.3E-32 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS04480 0cd1a74f20886aed9f3da911101574db 68 SUPERFAMILY SSF143800 1 64 6.67E-26 T 23-04-2016 NIDE_RS04480 0cd1a74f20886aed9f3da911101574db 68 PANTHER PTHR33280 1 64 4.5E-36 T 23-04-2016 NIDE_RS04480 0cd1a74f20886aed9f3da911101574db 68 PANTHER PTHR33280:SF2 1 64 4.5E-36 T 23-04-2016 NIDE_RS04480 0cd1a74f20886aed9f3da911101574db 68 ProSitePatterns PS01143 Ribosomal protein L31 signature. 34 55 - T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS07000 79dcb4df41b623bfc5805f20ec416643 452 PANTHER PTHR30624:SF1 2 452 1.5E-146 T 23-04-2016 NIDE_RS07000 79dcb4df41b623bfc5805f20ec416643 452 Pfam PF01523 Putative modulator of DNA gyrase 30 320 3.2E-58 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- NIDE_RS07000 79dcb4df41b623bfc5805f20ec416643 452 PANTHER PTHR30624 2 452 1.5E-146 T 23-04-2016 NIDE_RS07000 79dcb4df41b623bfc5805f20ec416643 452 SUPERFAMILY SSF111283 9 451 3.66E-129 T 23-04-2016 NIDE_RS15780 276dd76a2eb69ec26c23d6fee49da54d 352 PANTHER PTHR30486:SF6 2 344 8.6E-175 T 23-04-2016 NIDE_RS15780 276dd76a2eb69ec26c23d6fee49da54d 352 SMART SM00382 122 256 3.7E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS15780 276dd76a2eb69ec26c23d6fee49da54d 352 Gene3D G3DSA:3.40.50.300 100 338 1.1E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15780 276dd76a2eb69ec26c23d6fee49da54d 352 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS15780 276dd76a2eb69ec26c23d6fee49da54d 352 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 341 5.6E-150 T 23-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 NIDE_RS15780 276dd76a2eb69ec26c23d6fee49da54d 352 PANTHER PTHR30486 2 344 8.6E-175 T 23-04-2016 NIDE_RS15780 276dd76a2eb69ec26c23d6fee49da54d 352 SUPERFAMILY SSF52540 5 334 5.41E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15780 276dd76a2eb69ec26c23d6fee49da54d 352 Pfam PF00437 Type II/IV secretion system protein 12 263 8.1E-43 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 NIDE_RS12225 3fb0f7e3ee283603db1ef2061822a7e8 177 PIRSF PIRSF006135 9 177 4.0E-47 T 23-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 NIDE_RS12225 3fb0f7e3ee283603db1ef2061822a7e8 177 PANTHER PTHR34848 1 177 1.4E-64 T 23-04-2016 NIDE_RS12225 3fb0f7e3ee283603db1ef2061822a7e8 177 SUPERFAMILY SSF52540 10 177 9.74E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12225 3fb0f7e3ee283603db1ef2061822a7e8 177 Gene3D G3DSA:3.40.50.300 11 177 4.6E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12225 3fb0f7e3ee283603db1ef2061822a7e8 177 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 11 176 9.8E-53 T 23-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 NIDE_RS19645 dfc4ba54db0bc839645375e62bd84c3e 144 Gene3D G3DSA:2.40.50.140 84 144 3.4E-11 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS19645 dfc4ba54db0bc839645375e62bd84c3e 144 PANTHER PTHR33507 3 144 4.2E-22 T 23-04-2016 NIDE_RS19645 dfc4ba54db0bc839645375e62bd84c3e 144 PANTHER PTHR33507:SF3 3 144 4.2E-22 T 23-04-2016 NIDE_RS19645 dfc4ba54db0bc839645375e62bd84c3e 144 SUPERFAMILY SSF141322 77 143 3.4E-6 T 23-04-2016 NIDE_RS19645 dfc4ba54db0bc839645375e62bd84c3e 144 Pfam PF01957 NfeD-like C-terminal, partner-binding 5 143 3.9E-19 T 23-04-2016 IPR002810 NfeD-like, C-terminal domain NIDE_RS19190 c9aafd6040bc9b025dd9f75a0807d9f8 235 Pfam PF05552 Conserved TM helix 106 143 3.0E-9 T 23-04-2016 IPR008910 Conserved TM helix NIDE_RS11955 14586c26cf36b87138b6554322eb963c 278 PANTHER PTHR34322:SF1 2 181 7.4E-40 T 23-04-2016 NIDE_RS11955 14586c26cf36b87138b6554322eb963c 278 Gene3D G3DSA:1.10.10.10 239 275 8.9E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS11955 14586c26cf36b87138b6554322eb963c 278 SMART SM01321 9 123 2.2E-38 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 NIDE_RS11955 14586c26cf36b87138b6554322eb963c 278 Pfam PF13384 Homeodomain-like domain 243 275 1.1E-5 T 23-04-2016 NIDE_RS11955 14586c26cf36b87138b6554322eb963c 278 Pfam PF01797 Transposase IS200 like 13 120 1.4E-12 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 NIDE_RS11955 14586c26cf36b87138b6554322eb963c 278 Gene3D G3DSA:3.30.70.1290 6 126 8.1E-14 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 NIDE_RS11955 14586c26cf36b87138b6554322eb963c 278 SUPERFAMILY SSF143422 3 126 7.72E-26 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 NIDE_RS11955 14586c26cf36b87138b6554322eb963c 278 PANTHER PTHR34322 2 181 7.4E-40 T 23-04-2016 NIDE_RS20990 3aa2a73ba3680fa54d0dd162accc13f9 671 Pfam PF12796 Ankyrin repeats (3 copies) 60 137 8.0E-12 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS20990 3aa2a73ba3680fa54d0dd162accc13f9 671 SMART SM00248 75 104 2.2 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20990 3aa2a73ba3680fa54d0dd162accc13f9 671 SMART SM00248 141 184 36.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20990 3aa2a73ba3680fa54d0dd162accc13f9 671 SMART SM00248 108 137 0.14 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20990 3aa2a73ba3680fa54d0dd162accc13f9 671 SMART SM00248 42 71 2600.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS20990 3aa2a73ba3680fa54d0dd162accc13f9 671 PANTHER PTHR24188 46 196 8.8E-30 T 23-04-2016 NIDE_RS20990 3aa2a73ba3680fa54d0dd162accc13f9 671 SUPERFAMILY SSF48403 41 200 8.24E-30 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS20990 3aa2a73ba3680fa54d0dd162accc13f9 671 Gene3D G3DSA:1.25.40.20 121 201 8.4E-17 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS20990 3aa2a73ba3680fa54d0dd162accc13f9 671 Gene3D G3DSA:1.25.40.20 47 120 1.5E-18 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS03020 d3b5ec670d522194f325e8fc848519d5 135 Pfam PF01850 PIN domain 5 123 3.5E-18 T 23-04-2016 IPR002716 PIN domain NIDE_RS03020 d3b5ec670d522194f325e8fc848519d5 135 PANTHER PTHR33653 1 130 7.8E-17 T 23-04-2016 NIDE_RS03020 d3b5ec670d522194f325e8fc848519d5 135 SUPERFAMILY SSF88723 3 129 1.77E-24 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS03020 d3b5ec670d522194f325e8fc848519d5 135 PANTHER PTHR33653:SF2 1 130 7.8E-17 T 23-04-2016 NIDE_RS03020 d3b5ec670d522194f325e8fc848519d5 135 Gene3D G3DSA:3.40.50.1010 3 128 5.6E-23 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS03020 d3b5ec670d522194f325e8fc848519d5 135 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 129 11.296 T 23-04-2016 IPR022907 VapC family GO:0004540 NIDE_RS05885 71da395e1486a57b07b44433941e8cf7 103 Gene3D G3DSA:1.10.10.10 1 48 1.3E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS05885 71da395e1486a57b07b44433941e8cf7 103 Pfam PF12728 Helix-turn-helix domain 1 48 3.5E-11 T 23-04-2016 NIDE_RS05885 71da395e1486a57b07b44433941e8cf7 103 SUPERFAMILY SSF46955 1 50 1.06E-8 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS05885 71da395e1486a57b07b44433941e8cf7 103 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 2 47 5.0E-8 T 23-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 NIDE_RS16280 af1a08c9680a004446c4e3d6856adb8c 106 Gene3D G3DSA:2.60.300.12 1 95 2.1E-32 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS16280 af1a08c9680a004446c4e3d6856adb8c 106 PANTHER PTHR10072 1 105 4.2E-43 T 23-04-2016 NIDE_RS16280 af1a08c9680a004446c4e3d6856adb8c 106 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 101 7.7E-23 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS16280 af1a08c9680a004446c4e3d6856adb8c 106 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 87 104 - T 23-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site NIDE_RS16280 af1a08c9680a004446c4e3d6856adb8c 106 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 105 4.5E-38 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 NIDE_RS16280 af1a08c9680a004446c4e3d6856adb8c 106 SUPERFAMILY SSF89360 1 95 2.22E-30 T 23-04-2016 IPR000361 FeS cluster biogenesis NIDE_RS00985 928e57e7bcc6315542d427bf4500e4a9 531 Gene3D G3DSA:2.40.160.50 150 529 3.8E-49 T 23-04-2016 NIDE_RS00985 928e57e7bcc6315542d427bf4500e4a9 531 Gene3D G3DSA:3.10.20.310 40 115 1.6E-13 T 23-04-2016 NIDE_RS00985 928e57e7bcc6315542d427bf4500e4a9 531 Pfam PF01103 Surface antigen 371 507 9.5E-5 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 NIDE_RS00985 928e57e7bcc6315542d427bf4500e4a9 531 PANTHER PTHR34597 28 531 9.6E-72 T 23-04-2016 NIDE_RS00985 928e57e7bcc6315542d427bf4500e4a9 531 Pfam PF08479 POTRA domain, ShlB-type 42 115 1.7E-17 T 23-04-2016 IPR013686 Polypeptide-transport-associated, ShlB-type NIDE_RS00985 928e57e7bcc6315542d427bf4500e4a9 531 PANTHER PTHR34597:SF1 28 531 9.6E-72 T 23-04-2016 NIDE_RS02620 1ea57d288710d17c0d46d159cb4285c3 259 PANTHER PTHR32145 1 244 9.8E-72 T 23-04-2016 NIDE_RS02620 1ea57d288710d17c0d46d159cb4285c3 259 Pfam PF00753 Metallo-beta-lactamase superfamily 31 222 9.2E-9 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS02620 1ea57d288710d17c0d46d159cb4285c3 259 SUPERFAMILY SSF56281 6 240 6.23E-30 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS02620 1ea57d288710d17c0d46d159cb4285c3 259 Gene3D G3DSA:3.60.15.10 26 241 3.2E-46 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS02620 1ea57d288710d17c0d46d159cb4285c3 259 PANTHER PTHR32145:SF7 1 244 9.8E-72 T 23-04-2016 NIDE_RS02620 1ea57d288710d17c0d46d159cb4285c3 259 SMART SM00849 29 222 1.3E-12 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS09415 f751749a9d97d01f6e5a2d8da3442022 170 PANTHER PTHR13343 17 167 4.2E-18 T 23-04-2016 NIDE_RS09415 f751749a9d97d01f6e5a2d8da3442022 170 PIRSF PIRSF004633 5 169 2.7E-16 T 23-04-2016 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain NIDE_RS09415 f751749a9d97d01f6e5a2d8da3442022 170 PANTHER PTHR13343:SF4 17 167 4.2E-18 T 23-04-2016 NIDE_RS09415 f751749a9d97d01f6e5a2d8da3442022 170 Pfam PF13883 Pyridoxamine 5'-phosphate oxidase 13 151 1.8E-8 T 23-04-2016 NIDE_RS09415 f751749a9d97d01f6e5a2d8da3442022 170 Gene3D G3DSA:2.30.110.10 10 153 3.0E-39 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS09415 f751749a9d97d01f6e5a2d8da3442022 170 SUPERFAMILY SSF50475 10 152 1.76E-28 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS10150 5be95214e9d6dcb93370ed50a835d5bb 534 PANTHER PTHR35861 3 533 3.9E-129 T 23-04-2016 NIDE_RS10150 5be95214e9d6dcb93370ed50a835d5bb 534 PANTHER PTHR35861:SF1 3 533 3.9E-129 T 23-04-2016 NIDE_RS10150 5be95214e9d6dcb93370ed50a835d5bb 534 Pfam PF04984 Phage tail sheath protein 5 526 3.9E-53 T 23-04-2016 IPR007067 Tail sheath protein NIDE_RS04375 9b59337c443b8578217f7337a48b67e6 506 Pfam PF03136 Pup-ligase protein 3 458 2.7E-163 T 23-04-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 NIDE_RS04375 9b59337c443b8578217f7337a48b67e6 506 PANTHER PTHR42307 41 477 2.0E-103 T 23-04-2016 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 PANTHER PTHR11353 1 545 8.4E-246 T 23-04-2016 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 SUPERFAMILY SSF48592 405 521 3.82E-78 T 23-04-2016 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 SUPERFAMILY SSF48592 6 133 3.82E-78 T 23-04-2016 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 404 415 - T 23-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 Hamap MF_00600 60 kDa chaperonin [groL]. 1 545 41.989 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 PRINTS PR00298 60kDa chaperonin signature 397 418 1.5E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 PRINTS PR00298 60kDa chaperonin signature 349 374 1.5E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 PRINTS PR00298 60kDa chaperonin signature 267 290 1.5E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 PRINTS PR00298 60kDa chaperonin signature 82 109 1.5E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 PRINTS PR00298 60kDa chaperonin signature 26 52 1.5E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 SUPERFAMILY SSF52029 184 375 3.89E-84 T 23-04-2016 IPR027409 GroEL-like apical domain NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 Gene3D G3DSA:3.50.7.10 188 365 3.5E-100 T 23-04-2016 IPR027409 GroEL-like apical domain NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 Gene3D G3DSA:1.10.560.10 7 187 1.5E-47 T 23-04-2016 IPR027413 GroEL-like equatorial domain NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 522 2.3E-98 T 23-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 527 2.5E-263 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 SUPERFAMILY SSF54849 136 203 9.84E-25 T 23-04-2016 NIDE_RS06385 2e45974fe51cbe4d8d02c03f88613ab9 546 Gene3D G3DSA:1.10.560.10 366 518 3.5E-41 T 23-04-2016 IPR027413 GroEL-like equatorial domain NIDE_RS20745 6a7457bd5144f5d91c727e8ea1c5cf19 393 SUPERFAMILY SSF53756 4 384 1.05E-31 T 23-04-2016 NIDE_RS20745 6a7457bd5144f5d91c727e8ea1c5cf19 393 Pfam PF13692 Glycosyl transferases group 1 214 348 3.8E-23 T 23-04-2016 NIDE_RS20745 6a7457bd5144f5d91c727e8ea1c5cf19 393 PANTHER PTHR12526 4 77 1.3E-14 T 23-04-2016 NIDE_RS20745 6a7457bd5144f5d91c727e8ea1c5cf19 393 PANTHER PTHR12526 98 387 1.3E-14 T 23-04-2016 NIDE_RS15950 2533f606ab7f5d3feeeef90f484a93e5 121 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 114 3.6E-9 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIDE_RS15950 2533f606ab7f5d3feeeef90f484a93e5 121 SUPERFAMILY SSF54593 3 119 5.37E-22 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS15950 2533f606ab7f5d3feeeef90f484a93e5 121 Gene3D G3DSA:3.10.180.10 6 117 1.3E-18 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 Gene3D G3DSA:1.25.40.10 206 268 6.2E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 Gene3D G3DSA:1.25.40.10 429 519 6.2E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 Gene3D G3DSA:1.25.40.10 131 138 6.2E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 Gene3D G3DSA:1.25.40.10 45 99 6.2E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 SUPERFAMILY SSF48452 56 107 4.4E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 SUPERFAMILY SSF48452 198 273 4.4E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 SUPERFAMILY SSF48452 393 519 5.69E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 SMART SM00028 470 503 18.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 SMART SM00028 427 460 40.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 SMART SM00028 52 85 57.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 PANTHER PTHR23083 51 98 1.6E-16 T 23-04-2016 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 PANTHER PTHR23083 197 295 1.6E-16 T 23-04-2016 NIDE_RS19905 998217e9e8196eb07f23ac4577b20166 544 PANTHER PTHR23083 437 519 1.6E-16 T 23-04-2016 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 44 475 3.5E-131 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 PANTHER PTHR23135 27 480 1.9E-157 T 23-04-2016 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 SUPERFAMILY SSF53623 123 336 3.66E-59 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 Gene3D G3DSA:3.40.1390.10 12 87 1.7E-22 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 Pfam PF01225 Mur ligase family, catalytic domain 39 99 5.1E-9 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 Pfam PF02875 Mur ligase family, glutamate ligase domain 344 406 7.4E-13 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 PANTHER PTHR23135:SF3 27 480 1.9E-157 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 SUPERFAMILY SSF63418 33 119 1.7E-20 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 13 477 33.631 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 Gene3D G3DSA:3.40.1190.10 105 335 2.8E-76 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 Pfam PF08245 Mur ligase middle domain 128 316 2.2E-55 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 Gene3D G3DSA:3.90.190.20 337 477 3.5E-41 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS03470 fc8661da3c7efeb5230de2a0eccad3d0 487 SUPERFAMILY SSF53244 339 475 9.61E-33 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 NIDE_RS04650 eeee349ea44177b294e616d77a0f327d 346 Gene3D G3DSA:3.40.1780.10 176 338 2.5E-90 T 23-04-2016 NIDE_RS04650 eeee349ea44177b294e616d77a0f327d 346 Gene3D G3DSA:3.40.1780.10 1 62 2.5E-90 T 23-04-2016 NIDE_RS04650 eeee349ea44177b294e616d77a0f327d 346 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2 338 3.0E-111 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS04650 eeee349ea44177b294e616d77a0f327d 346 SUPERFAMILY SSF111337 1 338 3.92E-116 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS04650 eeee349ea44177b294e616d77a0f327d 346 PANTHER PTHR30307:SF0 2 345 5.4E-144 T 23-04-2016 NIDE_RS04650 eeee349ea44177b294e616d77a0f327d 346 Pfam PF02547 Queuosine biosynthesis protein 3 338 8.5E-120 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS04650 eeee349ea44177b294e616d77a0f327d 346 PANTHER PTHR30307 2 345 5.4E-144 T 23-04-2016 NIDE_RS04650 eeee349ea44177b294e616d77a0f327d 346 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 339 40.807 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 NIDE_RS04650 eeee349ea44177b294e616d77a0f327d 346 Gene3D G3DSA:2.40.10.240 64 121 2.0E-5 T 23-04-2016 NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 PIRSF PIRSF000386 1 254 1.8E-95 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 257 104.563 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 Gene3D G3DSA:1.10.1270.20 167 250 3.8E-34 T 23-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 PANTHER PTHR32125 1 102 2.6E-105 T 23-04-2016 NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 PANTHER PTHR32125 118 234 2.6E-105 T 23-04-2016 NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 227 1.2E-67 T 23-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 235 7.0E-91 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 SUPERFAMILY SSF75217 1 249 5.95E-93 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 PANTHER PTHR32125:SF1 1 102 2.6E-105 T 23-04-2016 NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 PANTHER PTHR32125:SF1 118 234 2.6E-105 T 23-04-2016 NIDE_RS14075 c0fb722c95c8b9a5d246517e9259e182 257 Gene3D G3DSA:3.40.1280.10 1 166 9.3E-62 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 Gene3D G3DSA:1.25.10.10 204 292 3.9E-40 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 Gene3D G3DSA:1.25.10.10 10 170 3.9E-40 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 PANTHER PTHR12697 204 313 1.6E-21 T 23-04-2016 NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 PANTHER PTHR12697 10 73 1.6E-21 T 23-04-2016 NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 PANTHER PTHR12697 111 170 1.6E-21 T 23-04-2016 NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 PANTHER PTHR12697:SF18 204 313 1.6E-21 T 23-04-2016 NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 PANTHER PTHR12697:SF18 10 73 1.6E-21 T 23-04-2016 NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 PANTHER PTHR12697:SF18 111 170 1.6E-21 T 23-04-2016 NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 SUPERFAMILY SSF48371 205 292 1.7E-26 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 SUPERFAMILY SSF48371 12 147 1.7E-26 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 SMART SM00567 E-Z type HEAT repeats 250 279 900.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 SMART SM00567 E-Z type HEAT repeats 188 216 340.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 SMART SM00567 E-Z type HEAT repeats 58 90 340.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 SMART SM00567 E-Z type HEAT repeats 27 56 9.7 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 SMART SM00567 E-Z type HEAT repeats 218 247 1.4E-4 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 Pfam PF13646 HEAT repeats 186 261 2.9E-14 T 23-04-2016 NIDE_RS18920 b7f875a33774193d403589fb37cfb05d 345 Pfam PF13646 HEAT repeats 16 103 1.3E-10 T 23-04-2016 NIDE_RS06740 fbba6ce054bdb6cf1260fa6ccc351059 113 Pfam PF00427 Phycobilisome Linker polypeptide 40 97 9.9E-7 T 23-04-2016 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 NIDE_RS06740 fbba6ce054bdb6cf1260fa6ccc351059 113 ProDom PD000852 PHYCOBILISOME LINKER POLYPEPTIDE PHOTOSYNTHESIS ELECTRON REPEAT ANCHOR ROD-CORE CHLOROPLAST ROD 39 112 0.002 T 23-04-2016 IPR001297 Phycobilisome linker domain GO:0015979|GO:0030089 NIDE_RS11005 a48c029fa1d32995de4e74c0bd859b9a 416 Pfam PF13579 Glycosyl transferase 4-like domain 19 200 5.9E-22 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS11005 a48c029fa1d32995de4e74c0bd859b9a 416 PANTHER PTHR12526 1 408 7.5E-39 T 23-04-2016 NIDE_RS11005 a48c029fa1d32995de4e74c0bd859b9a 416 PANTHER PTHR12526:SF320 1 408 7.5E-39 T 23-04-2016 NIDE_RS11005 a48c029fa1d32995de4e74c0bd859b9a 416 Pfam PF00534 Glycosyl transferases group 1 223 381 7.5E-15 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS11005 a48c029fa1d32995de4e74c0bd859b9a 416 SUPERFAMILY SSF53756 3 402 1.84E-51 T 23-04-2016 NIDE_RS16680 6e8e6bd62005c5f3490d8e1d47c0c5d0 157 Pfam PF09900 Predicted membrane protein (DUF2127) 13 150 5.1E-34 T 23-04-2016 IPR021125 Protein of unknown function DUF2127 NIDE_RS00925 bf38e5dba2fed059c53d1c42c40fdd8b 316 Pfam PF08349 Protein of unknown function (DUF1722) 191 307 9.7E-44 T 23-04-2016 IPR013560 Domain of unknown function DUF1722 NIDE_RS00925 bf38e5dba2fed059c53d1c42c40fdd8b 316 PANTHER PTHR30087 1 316 3.1E-134 T 23-04-2016 NIDE_RS00925 bf38e5dba2fed059c53d1c42c40fdd8b 316 Pfam PF04463 Protein of unknown function (DUF523) 8 148 1.5E-36 T 23-04-2016 IPR007553 Domain of unknown function DUF523 NIDE_RS00925 bf38e5dba2fed059c53d1c42c40fdd8b 316 PANTHER PTHR30087:SF0 1 316 3.1E-134 T 23-04-2016 NIDE_RS00925 bf38e5dba2fed059c53d1c42c40fdd8b 316 PIRSF PIRSF037004 1 316 5.4E-126 T 23-04-2016 IPR017087 Uncharacterised conserved protein UCP037004 NIDE_RS02850 820a0170a9443403789b7b487c25922b 420 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 85 329 1.3E-51 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA NIDE_RS02850 820a0170a9443403789b7b487c25922b 420 SUPERFAMILY SSF53335 24 382 3.98E-87 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02850 820a0170a9443403789b7b487c25922b 420 PANTHER PTHR12049 22 404 8.8E-60 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA NIDE_RS10645 7248648833dfc241934d428c9ec23242 237 Pfam PF12945 Flagellar protein YcgR 16 99 2.9E-15 T 23-04-2016 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal NIDE_RS10645 7248648833dfc241934d428c9ec23242 237 Gene3D G3DSA:2.40.10.220 137 212 1.5E-16 T 23-04-2016 NIDE_RS10645 7248648833dfc241934d428c9ec23242 237 SUPERFAMILY SSF141371 11 109 1.41E-10 T 23-04-2016 NIDE_RS10645 7248648833dfc241934d428c9ec23242 237 Gene3D G3DSA:2.30.110.10 14 108 8.9E-7 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS10645 7248648833dfc241934d428c9ec23242 237 Pfam PF07238 PilZ domain 108 205 1.1E-7 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS10645 7248648833dfc241934d428c9ec23242 237 SUPERFAMILY SSF141371 138 207 3.37E-7 T 23-04-2016 NIDE_RS00680 c625ef8671963c5542b3e7d71676cc22 743 PANTHER PTHR10788:SF6 192 728 2.5E-158 T 23-04-2016 NIDE_RS00680 c625ef8671963c5542b3e7d71676cc22 743 PANTHER PTHR10788 192 728 2.5E-158 T 23-04-2016 NIDE_RS00680 c625ef8671963c5542b3e7d71676cc22 743 Pfam PF00982 Glycosyltransferase family 20 258 722 1.7E-126 T 23-04-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 NIDE_RS00680 c625ef8671963c5542b3e7d71676cc22 743 SUPERFAMILY SSF53756 257 719 1.93E-131 T 23-04-2016 NIDE_RS00680 c625ef8671963c5542b3e7d71676cc22 743 Gene3D G3DSA:3.40.50.2000 514 705 3.8E-66 T 23-04-2016 NIDE_RS00680 c625ef8671963c5542b3e7d71676cc22 743 Gene3D G3DSA:3.40.50.2000 257 499 6.1E-73 T 23-04-2016 NIDE_RS10605 8b654d0bfc4256bae5d113afaa8328e0 101 SUPERFAMILY SSF101498 23 94 1.31E-14 T 23-04-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 NIDE_RS10605 8b654d0bfc4256bae5d113afaa8328e0 101 Pfam PF04316 Anti-sigma-28 factor, FlgM 39 92 5.0E-15 T 23-04-2016 IPR031316 Anti-sigma-28 factor FlgM, C-terminal NIDE_RS10605 8b654d0bfc4256bae5d113afaa8328e0 101 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 20 95 3.5E-16 T 23-04-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 NIDE_RS12845 4ff0dbc52fe8bdb0fa1024c63ffb6190 228 PANTHER PTHR13061:SF8 34 219 3.4E-39 T 23-04-2016 NIDE_RS12845 4ff0dbc52fe8bdb0fa1024c63ffb6190 228 PANTHER PTHR13061 34 219 3.4E-39 T 23-04-2016 NIDE_RS12845 4ff0dbc52fe8bdb0fa1024c63ffb6190 228 Gene3D G3DSA:2.160.10.10 38 187 2.6E-29 T 23-04-2016 NIDE_RS12845 4ff0dbc52fe8bdb0fa1024c63ffb6190 228 SUPERFAMILY SSF51161 38 209 1.05E-29 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 Pfam PF13414 TPR repeat 326 363 1.3E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 Pfam PF13414 TPR repeat 90 126 3.8E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 Pfam PF13414 TPR repeat 265 299 1.3E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 Pfam PF14559 Tetratricopeptide repeat 130 190 8.5E-11 T 23-04-2016 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 Pfam PF14559 Tetratricopeptide repeat 196 260 1.8E-8 T 23-04-2016 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 Gene3D G3DSA:1.25.40.10 74 186 1.1E-27 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SUPERFAMILY SSF48452 283 386 2.4E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00671 251 282 150.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00671 114 146 12.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00671 217 248 13.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00671 353 385 93.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 Gene3D G3DSA:1.25.40.10 187 253 2.4E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 Gene3D G3DSA:1.25.40.10 323 380 7.4E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 Gene3D G3DSA:1.25.40.10 254 322 9.5E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SUPERFAMILY SSF48452 82 318 9.67E-40 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 PANTHER PTHR23083 72 395 6.1E-65 T 23-04-2016 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00028 251 284 0.27 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00028 319 352 2.1E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00028 353 387 460.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00028 80 113 0.045 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00028 285 318 0.0051 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00028 149 182 0.056 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00028 114 148 0.15 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00028 217 250 0.008 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS02890 9d0060816892368f3fab28257f7f5a01 399 SMART SM00028 183 216 0.19 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 PIRSF PIRSF036406 1 325 2.8E-86 T 23-04-2016 IPR014606 D,D-heptose 7-phosphate kinase KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 PRINTS PR00960 LmbP protein signature 6 21 1.8E-43 T 23-04-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 PRINTS PR00960 LmbP protein signature 137 156 1.8E-43 T 23-04-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 PRINTS PR00960 LmbP protein signature 95 116 1.8E-43 T 23-04-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 PRINTS PR00960 LmbP protein signature 271 290 1.8E-43 T 23-04-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 PRINTS PR00960 LmbP protein signature 243 267 1.8E-43 T 23-04-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 Gene3D G3DSA:3.30.230.10 1 163 4.0E-23 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 Pfam PF08544 GHMP kinases C terminal 235 305 1.9E-9 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 SUPERFAMILY SSF55060 187 309 1.08E-24 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 Pfam PF00288 GHMP kinases N terminal domain 90 156 5.1E-7 T 23-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 Gene3D G3DSA:3.30.70.890 205 305 2.7E-16 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 PANTHER PTHR32463 1 305 5.7E-65 T 23-04-2016 NIDE_RS10660 fcb9f271f1c88d10e85774f9b4323c84 325 SUPERFAMILY SSF54211 1 174 8.35E-29 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 Gene3D G3DSA:3.40.50.150 178 400 3.1E-44 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 286 292 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 Pfam PF12161 HsdM N-terminal domain 5 143 2.1E-12 T 23-04-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 SUPERFAMILY SSF53335 3 484 7.08E-115 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 PANTHER PTHR30195 115 387 1.8E-48 T 23-04-2016 NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 PANTHER PTHR30195:SF2 115 387 1.8E-48 T 23-04-2016 NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 283 295 5.4E-18 T 23-04-2016 NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 200 214 5.4E-18 T 23-04-2016 NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 310 334 5.4E-18 T 23-04-2016 NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 176 192 5.4E-18 T 23-04-2016 NIDE_RS12035 73060972d81940e6e16bc13075ec453e 484 Pfam PF02384 N-6 DNA Methylase 153 451 1.0E-62 T 23-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 NIDE_RS14455 fa3ade2d9bf9867401a99ca33b34f9cf 396 PANTHER PTHR38431 91 395 8.2E-31 T 23-04-2016 NIDE_RS14455 fa3ade2d9bf9867401a99ca33b34f9cf 396 Gene3D G3DSA:1.10.260.40 14 72 5.5E-15 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS14455 fa3ade2d9bf9867401a99ca33b34f9cf 396 SUPERFAMILY SSF47413 13 78 1.41E-12 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS14455 fa3ade2d9bf9867401a99ca33b34f9cf 396 Pfam PF01381 Helix-turn-helix 19 71 9.2E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS14455 fa3ade2d9bf9867401a99ca33b34f9cf 396 Pfam PF12727 PBP superfamily domain 181 368 6.4E-54 T 23-04-2016 IPR024370 PBP domain NIDE_RS14455 fa3ade2d9bf9867401a99ca33b34f9cf 396 SMART SM00530 16 71 2.1E-11 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS14455 fa3ade2d9bf9867401a99ca33b34f9cf 396 Gene3D G3DSA:3.40.190.10 249 377 7.9E-10 T 23-04-2016 NIDE_RS14455 fa3ade2d9bf9867401a99ca33b34f9cf 396 SUPERFAMILY SSF53850 175 371 2.27E-9 T 23-04-2016 NIDE_RS10265 39e11d9fd939f6501ddc429ba17b5d97 355 Gene3D G3DSA:3.20.20.70 9 300 3.5E-43 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS10265 39e11d9fd939f6501ddc429ba17b5d97 355 PANTHER PTHR11228 10 188 1.9E-41 T 23-04-2016 NIDE_RS10265 39e11d9fd939f6501ddc429ba17b5d97 355 Pfam PF04055 Radical SAM superfamily 15 167 5.5E-19 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS10265 39e11d9fd939f6501ddc429ba17b5d97 355 SUPERFAMILY SSF102114 9 289 8.89E-44 T 23-04-2016 NIDE_RS10265 39e11d9fd939f6501ddc429ba17b5d97 355 Pfam PF13394 4Fe-4S single cluster domain 18 94 1.1E-6 T 23-04-2016 NIDE_RS10265 39e11d9fd939f6501ddc429ba17b5d97 355 PANTHER PTHR11228:SF7 10 188 1.9E-41 T 23-04-2016 NIDE_RS17055 dff83c98c526235599e829d87361dbf0 170 Hamap MF_01398 ATP synthase subunit b [atpF]. 4 162 13.36 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 NIDE_RS17055 dff83c98c526235599e829d87361dbf0 170 Pfam PF00430 ATP synthase B/B' CF(0) 13 142 3.5E-30 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 NIDE_RS17055 dff83c98c526235599e829d87361dbf0 170 Gene3D G3DSA:1.20.5.620 70 127 6.5E-4 T 23-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain NIDE_RS17055 dff83c98c526235599e829d87361dbf0 170 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 17 160 2.7E-29 T 23-04-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 NIDE_RS17055 dff83c98c526235599e829d87361dbf0 170 PANTHER PTHR33445 13 168 3.1E-38 T 23-04-2016 NIDE_RS17055 dff83c98c526235599e829d87361dbf0 170 SUPERFAMILY SSF81573 70 127 6.28E-6 T 23-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain NIDE_RS00225 8169b467e3d28a1cda348e376019a12b 201 PANTHER PTHR23026 14 196 7.4E-33 T 23-04-2016 NIDE_RS00225 8169b467e3d28a1cda348e376019a12b 201 SUPERFAMILY SSF55469 7 194 2.36E-52 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS00225 8169b467e3d28a1cda348e376019a12b 201 Gene3D G3DSA:3.40.109.10 7 193 1.4E-55 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS00225 8169b467e3d28a1cda348e376019a12b 201 Pfam PF00881 Nitroreductase family 16 159 6.1E-25 T 23-04-2016 IPR029479 Nitroreductase NIDE_RS14770 68ad55fe0f141547058a9ed9c0a5c92b 141 SUPERFAMILY SSF54631 13 132 5.05E-22 T 23-04-2016 NIDE_RS14770 68ad55fe0f141547058a9ed9c0a5c92b 141 Gene3D G3DSA:3.10.580.10 14 132 2.7E-22 T 23-04-2016 NIDE_RS14770 68ad55fe0f141547058a9ed9c0a5c92b 141 PANTHER PTHR11911 1 131 6.0E-12 T 23-04-2016 NIDE_RS14770 68ad55fe0f141547058a9ed9c0a5c92b 141 Pfam PF00571 CBS domain 80 132 1.5E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS14770 68ad55fe0f141547058a9ed9c0a5c92b 141 Pfam PF00571 CBS domain 36 68 0.0039 T 23-04-2016 IPR000644 CBS domain NIDE_RS14770 68ad55fe0f141547058a9ed9c0a5c92b 141 SMART SM00116 24 69 1.8 T 23-04-2016 IPR000644 CBS domain NIDE_RS14770 68ad55fe0f141547058a9ed9c0a5c92b 141 SMART SM00116 86 133 0.039 T 23-04-2016 IPR000644 CBS domain NIDE_RS16080 b67ee6708b3163ee9497e7b6838162ea 323 Gene3D G3DSA:3.20.20.100 27 291 6.2E-52 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS16080 b67ee6708b3163ee9497e7b6838162ea 323 SUPERFAMILY SSF51430 28 291 1.83E-57 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS16080 b67ee6708b3163ee9497e7b6838162ea 323 Pfam PF00248 Aldo/keto reductase family 42 231 1.9E-35 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain NIDE_RS16080 b67ee6708b3163ee9497e7b6838162ea 323 PANTHER PTHR11732 27 291 7.7E-65 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 PANTHER PTHR10617 1 303 1.5E-55 T 23-04-2016 NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 PANTHER PTHR10617 336 406 1.5E-55 T 23-04-2016 NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 25 403 2.6E-158 T 23-04-2016 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 PANTHER PTHR10617:SF103 1 303 1.5E-55 T 23-04-2016 NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 PANTHER PTHR10617:SF103 336 406 1.5E-55 T 23-04-2016 NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 Pfam PF03486 HI0933-like protein 2 397 1.6E-108 T 23-04-2016 NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 SUPERFAMILY SSF51905 343 398 5.72E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 SUPERFAMILY SSF51905 2 189 5.72E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 3 396 5.2E-87 T 23-04-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 Gene3D G3DSA:3.50.50.60 2 187 6.2E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 Gene3D G3DSA:3.50.50.60 346 397 6.2E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS16550 28f8dbb345f4717c895a305230ae2ccf 412 SUPERFAMILY SSF160996 190 346 1.7E-11 T 23-04-2016 NIDE_RS03975 e5957448dede09981a636c1985933031 253 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS03975 e5957448dede09981a636c1985933031 253 SMART SM00382 26 215 1.3E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS03975 e5957448dede09981a636c1985933031 253 Pfam PF00005 ABC transporter 17 165 7.4E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS03975 e5957448dede09981a636c1985933031 253 PANTHER PTHR24220 3 237 3.4E-110 T 23-04-2016 NIDE_RS03975 e5957448dede09981a636c1985933031 253 PANTHER PTHR24220:SF567 3 237 3.4E-110 T 23-04-2016 NIDE_RS03975 e5957448dede09981a636c1985933031 253 SUPERFAMILY SSF52540 1 232 2.13E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03975 e5957448dede09981a636c1985933031 253 Gene3D G3DSA:3.40.50.300 1 232 1.3E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12975 902e4cac22231f254c960df53c57960d 241 SUPERFAMILY SSF54106 178 222 1.83E-9 T 23-04-2016 IPR018392 LysM domain NIDE_RS12975 902e4cac22231f254c960df53c57960d 241 Pfam PF01476 LysM domain 181 222 1.4E-9 T 23-04-2016 IPR018392 LysM domain NIDE_RS12975 902e4cac22231f254c960df53c57960d 241 SMART SM00257 179 222 7.7E-12 T 23-04-2016 IPR018392 LysM domain NIDE_RS12975 902e4cac22231f254c960df53c57960d 241 Gene3D G3DSA:3.10.350.10 181 223 5.3E-14 T 23-04-2016 IPR018392 LysM domain NIDE_RS07570 2e2d1063b99e113fada9641aa3cbfaba 476 Gene3D G3DSA:1.25.40.10 33 195 5.6E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 23 248 6.7E-33 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 Gene3D G3DSA:1.10.601.10 21 93 2.5E-16 T 23-04-2016 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 Pfam PF04545 Sigma-70, region 4 197 245 4.2E-17 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 Pfam PF04542 Sigma-70 region 2 32 98 2.7E-14 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 PANTHER PTHR30385 15 250 3.8E-61 T 23-04-2016 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 Gene3D G3DSA:1.10.10.10 187 250 4.5E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 53 66 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 PIRSF PIRSF000770 1 252 8.8E-46 T 23-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 218 244 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 SUPERFAMILY SSF88659 99 168 1.35E-13 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 Pfam PF04539 Sigma-70 region 3 105 168 4.4E-10 T 23-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 SUPERFAMILY SSF88946 21 98 1.96E-23 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 26 248 9.1E-79 T 23-04-2016 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 PRINTS PR00046 Major sigma-70 factor signature 53 66 1.6E-12 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 PRINTS PR00046 Major sigma-70 factor signature 201 213 1.6E-12 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 PRINTS PR00046 Major sigma-70 factor signature 218 233 1.6E-12 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 PRINTS PR00046 Major sigma-70 factor signature 233 244 1.6E-12 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 PRINTS PR00046 Major sigma-70 factor signature 77 85 1.6E-12 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 PANTHER PTHR30385:SF7 15 250 3.8E-61 T 23-04-2016 NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 Gene3D G3DSA:1.10.10.10 98 145 1.8E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS10565 3331fedf15257cbde034d57879dd8349 253 SUPERFAMILY SSF88659 161 250 3.55E-22 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS02130 851bb2689242662936ffff0682cb923a 120 Gene3D G3DSA:2.40.10.220 6 109 6.4E-7 T 23-04-2016 NIDE_RS02130 851bb2689242662936ffff0682cb923a 120 Pfam PF07238 PilZ domain 5 99 4.1E-11 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS02130 851bb2689242662936ffff0682cb923a 120 SUPERFAMILY SSF141371 3 102 4.51E-11 T 23-04-2016 NIDE_RS12080 440f49e4304f42534cb96d2c51f75f50 329 Pfam PF13280 WYL domain 151 325 2.9E-46 T 23-04-2016 IPR026881 WYL domain NIDE_RS12080 440f49e4304f42534cb96d2c51f75f50 329 Pfam PF08279 HTH domain 9 62 1.1E-5 T 23-04-2016 IPR013196 Helix-turn-helix, type 11 NIDE_RS12080 440f49e4304f42534cb96d2c51f75f50 329 PANTHER PTHR34580:SF1 1 327 4.0E-70 T 23-04-2016 NIDE_RS12080 440f49e4304f42534cb96d2c51f75f50 329 Gene3D G3DSA:1.10.10.10 6 63 7.9E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS12080 440f49e4304f42534cb96d2c51f75f50 329 PANTHER PTHR34580 1 327 4.0E-70 T 23-04-2016 NIDE_RS02575 1eef2fee2e75a354ad72706887174094 462 PANTHER PTHR35093:SF2 9 391 8.0E-34 T 23-04-2016 NIDE_RS02575 1eef2fee2e75a354ad72706887174094 462 SUPERFAMILY SSF56935 36 399 7.51E-32 T 23-04-2016 NIDE_RS02575 1eef2fee2e75a354ad72706887174094 462 PANTHER PTHR35093 9 391 8.0E-34 T 23-04-2016 NIDE_RS02575 1eef2fee2e75a354ad72706887174094 462 Gene3D G3DSA:2.40.160.60 36 461 2.9E-88 T 23-04-2016 NIDE_RS02575 1eef2fee2e75a354ad72706887174094 462 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 24 396 7.8E-37 T 23-04-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) NIDE_RS12865 abd343f1fd51e5456343b303d01e0253 212 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 1 195 4.8E-60 T 23-04-2016 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67 NIDE_RS12865 abd343f1fd51e5456343b303d01e0253 212 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 1 211 37.938 T 23-04-2016 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67 NIDE_RS12865 abd343f1fd51e5456343b303d01e0253 212 Gene3D G3DSA:3.40.50.150 16 210 1.4E-55 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12865 abd343f1fd51e5456343b303d01e0253 212 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 4 210 6.2E-81 T 23-04-2016 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 NIDE_RS12865 abd343f1fd51e5456343b303d01e0253 212 PIRSF PIRSF023956 1 212 2.9E-78 T 23-04-2016 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67 NIDE_RS12865 abd343f1fd51e5456343b303d01e0253 212 SUPERFAMILY SSF53335 1 209 5.17E-50 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12865 abd343f1fd51e5456343b303d01e0253 212 PANTHER PTHR10259:SF16 1 192 5.3E-65 T 23-04-2016 NIDE_RS12865 abd343f1fd51e5456343b303d01e0253 212 PANTHER PTHR10259 1 192 5.3E-65 T 23-04-2016 NIDE_RS20260 0a292778ab3ae7ceaa4081f3b777c7b7 289 PANTHER PTHR37423 94 252 1.4E-26 T 23-04-2016 NIDE_RS20260 0a292778ab3ae7ceaa4081f3b777c7b7 289 Gene3D G3DSA:1.25.40.10 133 205 1.2E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20260 0a292778ab3ae7ceaa4081f3b777c7b7 289 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 38 207 3.3E-42 T 23-04-2016 IPR017689 Outer membrane protein assembly factor BamD NIDE_RS20260 0a292778ab3ae7ceaa4081f3b777c7b7 289 SUPERFAMILY SSF48452 41 211 1.66E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20260 0a292778ab3ae7ceaa4081f3b777c7b7 289 Gene3D G3DSA:1.25.40.10 39 132 2.8E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20260 0a292778ab3ae7ceaa4081f3b777c7b7 289 Pfam PF13525 Outer membrane lipoprotein 38 196 5.3E-33 T 23-04-2016 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 SUPERFAMILY SSF48452 59 186 2.28E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 Gene3D G3DSA:1.25.40.10 58 188 5.6E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 Pfam PF13432 Tetratricopeptide repeat 133 193 8.6E-5 T 23-04-2016 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 Pfam PF13432 Tetratricopeptide repeat 59 125 0.019 T 23-04-2016 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 PANTHER PTHR30483 510 661 6.1E-53 T 23-04-2016 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 PANTHER PTHR30483 292 477 6.1E-53 T 23-04-2016 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 Pfam PF13458 Periplasmic binding protein 289 659 4.1E-52 T 23-04-2016 IPR028081 Leucine-binding protein domain NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 Gene3D G3DSA:3.40.50.2300 407 477 1.7E-48 T 23-04-2016 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 Gene3D G3DSA:3.40.50.2300 512 610 1.7E-48 T 23-04-2016 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 Gene3D G3DSA:3.40.50.2300 352 399 4.7E-4 T 23-04-2016 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 SUPERFAMILY SSF53822 290 479 3.53E-69 T 23-04-2016 IPR028082 Periplasmic binding protein-like I NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 SUPERFAMILY SSF53822 514 663 3.53E-69 T 23-04-2016 IPR028082 Periplasmic binding protein-like I NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 PANTHER PTHR30483:SF6 510 661 6.1E-53 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NIDE_RS15400 68dd57d2a2510c55ac5e8e72a026bb37 664 PANTHER PTHR30483:SF6 292 477 6.1E-53 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NIDE_RS02125 ccfb5e1b23cb52b1dd8f368814da8ab8 463 Pfam PF11902 Protein of unknown function (DUF3422) 33 443 1.1E-48 T 23-04-2016 IPR021830 Protein of unknown function DUF3422 NIDE_RS16905 6303ed5be8a8d9ae94bb9d25342a5139 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 2.1E-17 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS16905 6303ed5be8a8d9ae94bb9d25342a5139 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 38 49 2.1E-17 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS16905 6303ed5be8a8d9ae94bb9d25342a5139 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 2.1E-17 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS16905 6303ed5be8a8d9ae94bb9d25342a5139 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 19 34 2.1E-17 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS16905 6303ed5be8a8d9ae94bb9d25342a5139 118 Gene3D G3DSA:1.10.10.10 13 88 6.8E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16905 6303ed5be8a8d9ae94bb9d25342a5139 118 PANTHER PTHR33154 13 81 9.1E-22 T 23-04-2016 NIDE_RS16905 6303ed5be8a8d9ae94bb9d25342a5139 118 SUPERFAMILY SSF46785 13 89 4.09E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16905 6303ed5be8a8d9ae94bb9d25342a5139 118 Pfam PF01022 Bacterial regulatory protein, arsR family 24 69 1.3E-16 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS16905 6303ed5be8a8d9ae94bb9d25342a5139 118 SMART SM00418 17 94 7.1E-24 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 NIDE_RS00305 74118b4a941430dc5fcb7ff569abb697 111 PANTHER PTHR36116 1 107 8.7E-41 T 23-04-2016 NIDE_RS00305 74118b4a941430dc5fcb7ff569abb697 111 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 4 108 23.121 T 23-04-2016 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 NIDE_RS00305 74118b4a941430dc5fcb7ff569abb697 111 SUPERFAMILY SSF103481 10 107 7.32E-6 T 23-04-2016 NIDE_RS00305 74118b4a941430dc5fcb7ff569abb697 111 PANTHER PTHR36116:SF1 1 107 8.7E-41 T 23-04-2016 NIDE_RS00305 74118b4a941430dc5fcb7ff569abb697 111 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 4 105 1.1E-37 T 23-04-2016 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 NIDE_RS16145 b1ccffb70cb000d59f4676c5b3b70118 167 Pfam PF08281 Sigma-70, region 4 106 156 3.6E-17 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS16145 b1ccffb70cb000d59f4676c5b3b70118 167 Gene3D G3DSA:1.10.10.10 99 160 4.0E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16145 b1ccffb70cb000d59f4676c5b3b70118 167 Pfam PF04542 Sigma-70 region 2 6 71 7.6E-15 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS16145 b1ccffb70cb000d59f4676c5b3b70118 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 160 1.2E-28 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS16145 b1ccffb70cb000d59f4676c5b3b70118 167 SUPERFAMILY SSF88659 84 160 1.87E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS16145 b1ccffb70cb000d59f4676c5b3b70118 167 SUPERFAMILY SSF88946 3 89 1.14E-16 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 NIDE_RS16145 b1ccffb70cb000d59f4676c5b3b70118 167 PANTHER PTHR30173 3 160 1.3E-36 T 23-04-2016 NIDE_RS16145 b1ccffb70cb000d59f4676c5b3b70118 167 Gene3D G3DSA:1.10.1740.10 3 72 2.3E-15 T 23-04-2016 NIDE_RS15645 3b45df8f893514e67775fe835547e046 352 PANTHER PTHR22926:SF3 1 348 2.3E-69 T 23-04-2016 NIDE_RS15645 3b45df8f893514e67775fe835547e046 352 PANTHER PTHR22926 1 348 2.3E-69 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS15645 3b45df8f893514e67775fe835547e046 352 Pfam PF00953 Glycosyl transferase family 4 73 220 8.8E-34 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS00210 c62e69c2f1f855a82e7049dfc95399f1 141 SUPERFAMILY SSF82784 2 140 7.85E-36 T 23-04-2016 IPR003718 OsmC/Ohr family NIDE_RS00210 c62e69c2f1f855a82e7049dfc95399f1 141 PANTHER PTHR33797:SF1 1 141 7.8E-51 T 23-04-2016 NIDE_RS00210 c62e69c2f1f855a82e7049dfc95399f1 141 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 2 137 1.1E-55 T 23-04-2016 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 NIDE_RS00210 c62e69c2f1f855a82e7049dfc95399f1 141 Gene3D G3DSA:3.30.300.20 1 139 3.2E-48 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta NIDE_RS00210 c62e69c2f1f855a82e7049dfc95399f1 141 Pfam PF02566 OsmC-like protein 41 135 1.2E-17 T 23-04-2016 IPR003718 OsmC/Ohr family NIDE_RS00210 c62e69c2f1f855a82e7049dfc95399f1 141 PANTHER PTHR33797 1 141 7.8E-51 T 23-04-2016 NIDE_RS11800 ba83c55966b1c041cfd41ea1e0ad9929 215 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 15 198 1.0E-41 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 NIDE_RS11800 ba83c55966b1c041cfd41ea1e0ad9929 215 PANTHER PTHR17490 14 214 8.0E-55 T 23-04-2016 NIDE_RS11800 ba83c55966b1c041cfd41ea1e0ad9929 215 Gene3D G3DSA:3.90.870.10 16 206 1.6E-58 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain NIDE_RS11800 ba83c55966b1c041cfd41ea1e0ad9929 215 Pfam PF01300 Telomere recombination 22 195 3.5E-45 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 NIDE_RS11800 ba83c55966b1c041cfd41ea1e0ad9929 215 SUPERFAMILY SSF55821 16 204 7.94E-51 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain NIDE_RS09420 915c863df476dbc9a2b30de1eb697eef 133 Pfam PF04355 SmpA / OmlA family 42 125 6.0E-6 T 23-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 NIDE_RS12760 f744811b365f5afd940c911a1852dd42 653 PANTHER PTHR11918:SF64 71 524 9.5E-32 T 23-04-2016 NIDE_RS12760 f744811b365f5afd940c911a1852dd42 653 Pfam PF02310 B12 binding domain 203 282 2.8E-7 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS12760 f744811b365f5afd940c911a1852dd42 653 SUPERFAMILY SSF52242 207 260 3.53E-5 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS12760 f744811b365f5afd940c911a1852dd42 653 SMART SM00729 341 555 4.6E-15 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 NIDE_RS12760 f744811b365f5afd940c911a1852dd42 653 SUPERFAMILY SSF102114 303 544 1.7E-27 T 23-04-2016 NIDE_RS12760 f744811b365f5afd940c911a1852dd42 653 PANTHER PTHR11918 71 524 9.5E-32 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein NIDE_RS12760 f744811b365f5afd940c911a1852dd42 653 Gene3D G3DSA:3.40.50.280 204 272 8.6E-4 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 NIDE_RS12760 f744811b365f5afd940c911a1852dd42 653 Gene3D G3DSA:3.80.30.20 348 540 2.3E-22 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe NIDE_RS12760 f744811b365f5afd940c911a1852dd42 653 Pfam PF04055 Radical SAM superfamily 347 509 9.7E-13 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 NIDE_RS02500 bce5d676044c332cb4016d8af02de99a 253 Gene3D G3DSA:2.60.120.620 20 143 2.3E-4 T 23-04-2016 NIDE_RS02500 bce5d676044c332cb4016d8af02de99a 253 SUPERFAMILY SSF51197 27 216 1.17E-9 T 23-04-2016 NIDE_RS02500 bce5d676044c332cb4016d8af02de99a 253 Gene3D G3DSA:2.60.120.620 172 218 5.7E-5 T 23-04-2016 NIDE_RS18475 2d723183a360da36237667ac70bb5e55 87 Pfam PF07238 PilZ domain 10 82 2.6E-6 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS18475 2d723183a360da36237667ac70bb5e55 87 Gene3D G3DSA:2.40.10.220 10 87 4.4E-4 T 23-04-2016 NIDE_RS18475 2d723183a360da36237667ac70bb5e55 87 SUPERFAMILY SSF141371 10 85 3.53E-8 T 23-04-2016 NIDE_RS01465 75f9f6c1cb42956b9eb97975f30dc255 172 PANTHER PTHR11839 5 169 1.9E-59 T 23-04-2016 NIDE_RS01465 75f9f6c1cb42956b9eb97975f30dc255 172 ProSitePatterns PS00893 Nudix box signature. 68 89 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NIDE_RS01465 75f9f6c1cb42956b9eb97975f30dc255 172 PANTHER PTHR11839:SF9 5 169 1.9E-59 T 23-04-2016 NIDE_RS01465 75f9f6c1cb42956b9eb97975f30dc255 172 Pfam PF00293 NUDIX domain 32 149 3.9E-18 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 NIDE_RS01465 75f9f6c1cb42956b9eb97975f30dc255 172 Gene3D G3DSA:3.90.79.10 3 165 1.1E-54 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 NIDE_RS01465 75f9f6c1cb42956b9eb97975f30dc255 172 SUPERFAMILY SSF55811 3 165 4.47E-47 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 NIDE_RS20265 66b45deb1ea4a698274e9f3509229989 567 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 41 285 1.0E-24 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 NIDE_RS08520 cebcbe04a1246c1e93185702aace3c27 296 Pfam PF03781 Sulfatase-modifying factor enzyme 1 29 293 5.2E-60 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS08520 cebcbe04a1246c1e93185702aace3c27 296 PANTHER PTHR23150 190 295 4.3E-73 T 23-04-2016 NIDE_RS08520 cebcbe04a1246c1e93185702aace3c27 296 PANTHER PTHR23150 28 167 4.3E-73 T 23-04-2016 NIDE_RS08520 cebcbe04a1246c1e93185702aace3c27 296 Gene3D G3DSA:3.90.1580.10 21 295 3.0E-76 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS08520 cebcbe04a1246c1e93185702aace3c27 296 SUPERFAMILY SSF56436 31 294 5.84E-75 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS15310 8da0a62e715c626df4483048d8c73b44 625 ProSitePatterns PS00018 EF-hand calcium-binding domain. 562 574 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site NIDE_RS09285 765a26b0ed54236d1ddb0d18bf158fc1 136 SUPERFAMILY SSF55021 4 66 1.03E-8 T 23-04-2016 NIDE_RS09285 765a26b0ed54236d1ddb0d18bf158fc1 136 Pfam PF01842 ACT domain 8 66 1.5E-6 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 NIDE_RS09285 765a26b0ed54236d1ddb0d18bf158fc1 136 PANTHER PTHR40099 1 134 8.1E-19 T 23-04-2016 NIDE_RS09285 765a26b0ed54236d1ddb0d18bf158fc1 136 SUPERFAMILY SSF55021 73 131 1.6E-7 T 23-04-2016 NIDE_RS09285 765a26b0ed54236d1ddb0d18bf158fc1 136 Gene3D G3DSA:3.30.70.260 8 55 2.7E-6 T 23-04-2016 NIDE_RS09285 765a26b0ed54236d1ddb0d18bf158fc1 136 Gene3D G3DSA:3.30.70.260 65 123 7.1E-7 T 23-04-2016 NIDE_RS09285 765a26b0ed54236d1ddb0d18bf158fc1 136 PANTHER PTHR40099:SF1 1 134 8.1E-19 T 23-04-2016 NIDE_RS17815 a917f1a0598c5801aecb702be70fbf1b 307 Pfam PF06727 Protein of unknown function (DUF1207) 43 306 1.9E-65 T 23-04-2016 IPR009599 Protein of unknown function DUF1207 NIDE_RS14580 fac9718810bc6c902e422aad773b718e 442 SUPERFAMILY SSF52540 77 363 8.91E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14580 fac9718810bc6c902e422aad773b718e 442 Pfam PF00271 Helicase conserved C-terminal domain 236 342 3.5E-25 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS14580 fac9718810bc6c902e422aad773b718e 442 SMART SM00487 21 224 2.0E-58 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIDE_RS14580 fac9718810bc6c902e422aad773b718e 442 Gene3D G3DSA:3.40.50.300 214 373 1.3E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14580 fac9718810bc6c902e422aad773b718e 442 SMART SM00490 262 343 4.6E-28 T 23-04-2016 IPR001650 Helicase, C-terminal NIDE_RS14580 fac9718810bc6c902e422aad773b718e 442 PANTHER PTHR24031 1 428 2.4E-148 T 23-04-2016 NIDE_RS14580 fac9718810bc6c902e422aad773b718e 442 Pfam PF00270 DEAD/DEAH box helicase 26 194 9.5E-47 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 NIDE_RS14580 fac9718810bc6c902e422aad773b718e 442 Gene3D G3DSA:3.40.50.300 2 213 1.8E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17520 debcfa187f116581a8e1f50de0503863 104 PANTHER PTHR36924:SF2 7 101 2.7E-28 T 23-04-2016 NIDE_RS17520 debcfa187f116581a8e1f50de0503863 104 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 10 89 3.7E-32 T 23-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 NIDE_RS17520 debcfa187f116581a8e1f50de0503863 104 SUPERFAMILY SSF47413 15 99 1.18E-24 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS17520 debcfa187f116581a8e1f50de0503863 104 Gene3D G3DSA:1.10.260.40 5 100 1.4E-35 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS17520 debcfa187f116581a8e1f50de0503863 104 PANTHER PTHR36924 7 101 2.7E-28 T 23-04-2016 NIDE_RS17520 debcfa187f116581a8e1f50de0503863 104 Pfam PF01381 Helix-turn-helix 28 74 1.8E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS17520 debcfa187f116581a8e1f50de0503863 104 SMART SM00530 19 75 3.0E-4 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS20205 b8ce3d2a75a780a7802d144f558cf080 149 Pfam PF00583 Acetyltransferase (GNAT) family 46 121 2.7E-11 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS20205 b8ce3d2a75a780a7802d144f558cf080 149 SUPERFAMILY SSF55729 2 142 9.95E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS20205 b8ce3d2a75a780a7802d144f558cf080 149 Gene3D G3DSA:3.40.630.30 1 141 1.3E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS20205 b8ce3d2a75a780a7802d144f558cf080 149 PANTHER PTHR23091 42 141 9.8E-13 T 23-04-2016 NIDE_RS08320 b0b317146191e264983f4ebcb713eda2 170 Pfam PF14464 Prokaryotic homologs of the JAB domain 8 144 1.0E-17 T 23-04-2016 IPR028090 JAB domain, prokaryotic NIDE_RS08320 b0b317146191e264983f4ebcb713eda2 170 PANTHER PTHR34858 70 129 1.6E-22 T 23-04-2016 NIDE_RS08320 b0b317146191e264983f4ebcb713eda2 170 PANTHER PTHR34858 3 48 1.6E-22 T 23-04-2016 NIDE_RS08320 b0b317146191e264983f4ebcb713eda2 170 Gene3D G3DSA:3.40.140.10 4 45 4.1E-27 T 23-04-2016 NIDE_RS08320 b0b317146191e264983f4ebcb713eda2 170 Gene3D G3DSA:3.40.140.10 81 168 4.1E-27 T 23-04-2016 NIDE_RS08320 b0b317146191e264983f4ebcb713eda2 170 SMART SM00232 3 167 0.0076 T 23-04-2016 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 NIDE_RS08320 b0b317146191e264983f4ebcb713eda2 170 SUPERFAMILY SSF102712 81 162 1.24E-23 T 23-04-2016 NIDE_RS08320 b0b317146191e264983f4ebcb713eda2 170 SUPERFAMILY SSF102712 4 45 1.24E-23 T 23-04-2016 NIDE_RS08320 b0b317146191e264983f4ebcb713eda2 170 PANTHER PTHR34858:SF1 70 129 1.6E-22 T 23-04-2016 NIDE_RS08320 b0b317146191e264983f4ebcb713eda2 170 PANTHER PTHR34858:SF1 3 48 1.6E-22 T 23-04-2016 NIDE_RS09525 2983acc466281bc5a926ad124d90682b 134 SUPERFAMILY SSF48452 44 109 2.78E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS09525 2983acc466281bc5a926ad124d90682b 134 SMART SM00028 38 71 200.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS09525 2983acc466281bc5a926ad124d90682b 134 SMART SM00028 72 105 3.7E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS09525 2983acc466281bc5a926ad124d90682b 134 Gene3D G3DSA:1.25.40.10 39 109 1.4E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS09525 2983acc466281bc5a926ad124d90682b 134 Pfam PF13414 TPR repeat 45 86 1.8E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02275 b54b015c52e680755391a83f5ce4bfa3 446 Pfam PF05161 MOFRL family 334 439 1.8E-36 T 23-04-2016 IPR007835 MOFRL domain NIDE_RS02275 b54b015c52e680755391a83f5ce4bfa3 446 Pfam PF13660 Domain of unknown function (DUF4147) 16 251 4.2E-80 T 23-04-2016 IPR025286 MOFRL-associated domain NIDE_RS02275 b54b015c52e680755391a83f5ce4bfa3 446 PANTHER PTHR12227:SF0 12 444 2.7E-155 T 23-04-2016 NIDE_RS02275 b54b015c52e680755391a83f5ce4bfa3 446 SUPERFAMILY SSF82544 12 444 2.35E-134 T 23-04-2016 NIDE_RS02275 b54b015c52e680755391a83f5ce4bfa3 446 Gene3D G3DSA:3.40.50.10180 16 266 5.3E-92 T 23-04-2016 NIDE_RS02275 b54b015c52e680755391a83f5ce4bfa3 446 PANTHER PTHR12227 12 444 2.7E-155 T 23-04-2016 NIDE_RS02275 b54b015c52e680755391a83f5ce4bfa3 446 Gene3D G3DSA:3.40.1480.10 267 444 1.5E-66 T 23-04-2016 IPR007835 MOFRL domain NIDE_RS10070 f200a466d92e256e4236cd70d159afe9 104 PIRSF PIRSF000077 1 104 3.9E-22 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NIDE_RS10070 f200a466d92e256e4236cd70d159afe9 104 Pfam PF00085 Thioredoxin 4 101 1.3E-18 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 NIDE_RS10070 f200a466d92e256e4236cd70d159afe9 104 PANTHER PTHR10438:SF281 1 102 1.1E-18 T 23-04-2016 NIDE_RS10070 f200a466d92e256e4236cd70d159afe9 104 Gene3D G3DSA:3.40.30.10 2 102 1.0E-23 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS10070 f200a466d92e256e4236cd70d159afe9 104 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 NIDE_RS10070 f200a466d92e256e4236cd70d159afe9 104 SUPERFAMILY SSF52833 2 101 2.61E-22 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS10070 f200a466d92e256e4236cd70d159afe9 104 PANTHER PTHR10438 1 102 1.1E-18 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 NIDE_RS20350 76f64c585e35ef369fea2cda6f300166 604 Pfam PF00041 Fibronectin type III domain 522 593 1.6E-5 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20350 76f64c585e35ef369fea2cda6f300166 604 Gene3D G3DSA:2.60.40.10 505 599 4.4E-13 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS20350 76f64c585e35ef369fea2cda6f300166 604 SUPERFAMILY SSF49265 498 597 2.41E-10 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20350 76f64c585e35ef369fea2cda6f300166 604 SMART SM00060 511 593 0.0011 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 NIDE_RS20350 76f64c585e35ef369fea2cda6f300166 604 PRINTS PR01217 Proline rich extensin signature 176 197 6.4E-11 T 23-04-2016 NIDE_RS20350 76f64c585e35ef369fea2cda6f300166 604 PRINTS PR01217 Proline rich extensin signature 323 348 6.4E-11 T 23-04-2016 NIDE_RS20350 76f64c585e35ef369fea2cda6f300166 604 PRINTS PR01217 Proline rich extensin signature 163 175 6.4E-11 T 23-04-2016 NIDE_RS20350 76f64c585e35ef369fea2cda6f300166 604 PRINTS PR01217 Proline rich extensin signature 197 213 6.4E-11 T 23-04-2016 NIDE_RS20665 fd6ef87e5d31691de49c3b0db575aa2b 209 SMART SM00271 133 191 2.6E-6 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20665 fd6ef87e5d31691de49c3b0db575aa2b 209 SUPERFAMILY SSF46565 129 187 4.97E-11 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20665 fd6ef87e5d31691de49c3b0db575aa2b 209 Pfam PF00226 DnaJ domain 134 187 9.6E-9 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS20665 fd6ef87e5d31691de49c3b0db575aa2b 209 Gene3D G3DSA:1.10.287.110 128 187 3.7E-8 T 23-04-2016 IPR001623 DnaJ domain NIDE_RS03065 840f7301ab0c775acfd7012e2dba5e5b 232 SUPERFAMILY SSF52540 11 228 3.55E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03065 840f7301ab0c775acfd7012e2dba5e5b 232 SMART SM00382 39 227 2.1E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS03065 840f7301ab0c775acfd7012e2dba5e5b 232 PANTHER PTHR24220:SF452 12 228 1.7E-111 T 23-04-2016 NIDE_RS03065 840f7301ab0c775acfd7012e2dba5e5b 232 Pfam PF00005 ABC transporter 31 178 2.0E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS03065 840f7301ab0c775acfd7012e2dba5e5b 232 PANTHER PTHR24220 12 228 1.7E-111 T 23-04-2016 NIDE_RS03065 840f7301ab0c775acfd7012e2dba5e5b 232 Gene3D G3DSA:3.40.50.300 9 226 7.6E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03200 ee9e01094722403020b39db6f760b67e 101 PANTHER PTHR37309 1 101 1.2E-19 T 23-04-2016 NIDE_RS03200 ee9e01094722403020b39db6f760b67e 101 PANTHER PTHR37309:SF1 1 101 1.2E-19 T 23-04-2016 NIDE_RS03200 ee9e01094722403020b39db6f760b67e 101 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 2 101 1.1E-23 T 23-04-2016 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 PANTHER PTHR10098:SF104 275 422 3.7E-17 T 23-04-2016 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 PANTHER PTHR10098:SF104 36 214 3.7E-17 T 23-04-2016 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 Pfam PF12770 CHAT domain 560 826 1.1E-52 T 23-04-2016 IPR024983 CHAT domain NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 PANTHER PTHR10098 275 422 3.7E-17 T 23-04-2016 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 PANTHER PTHR10098 36 214 3.7E-17 T 23-04-2016 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 SUPERFAMILY SSF48452 321 413 9.05E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 SUPERFAMILY SSF48452 40 239 8.47E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 Pfam PF13424 Tetratricopeptide repeat 113 179 2.9E-8 T 23-04-2016 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 SMART SM00028 153 186 25.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 SMART SM00028 113 146 26.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 SMART SM00028 33 66 61.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 SMART SM00028 344 377 5.3 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 SMART SM00028 384 417 81.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 Gene3D G3DSA:1.25.40.10 322 417 3.1E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20505 92f77f7f655197e74e2c2fd31289fdde 830 Gene3D G3DSA:1.25.40.10 40 245 5.8E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS03850 719762f4f72147434c63f7bd85487c44 743 PIRSF PIRSF009407 1 743 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 NIDE_RS03850 719762f4f72147434c63f7bd85487c44 743 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 740 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 NIDE_RS03850 719762f4f72147434c63f7bd85487c44 743 PANTHER PTHR36999 2 743 0.0 T 23-04-2016 NIDE_RS03850 719762f4f72147434c63f7bd85487c44 743 Gene3D G3DSA:3.40.718.10 341 364 3.6E-33 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 NIDE_RS03850 719762f4f72147434c63f7bd85487c44 743 Gene3D G3DSA:3.40.718.10 181 286 3.6E-33 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 NIDE_RS03850 719762f4f72147434c63f7bd85487c44 743 Gene3D G3DSA:3.40.718.10 540 647 3.6E-33 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 NIDE_RS03850 719762f4f72147434c63f7bd85487c44 743 SUPERFAMILY SSF53659 6 742 0.0 T 23-04-2016 NIDE_RS03850 719762f4f72147434c63f7bd85487c44 743 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 742 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 NIDE_RS09940 82f4df9bbeb3b29cd154fd06dd896a3c 93 Gene3D G3DSA:2.170.130.10 37 91 1.4E-10 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS09940 82f4df9bbeb3b29cd154fd06dd896a3c 93 PANTHER PTHR32552 54 91 1.5E-12 T 23-04-2016 NIDE_RS09940 82f4df9bbeb3b29cd154fd06dd896a3c 93 SUPERFAMILY SSF56935 53 91 9.16E-7 T 23-04-2016 NIDE_RS09940 82f4df9bbeb3b29cd154fd06dd896a3c 93 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 91 2.6E-5 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 NIDE_RS09940 82f4df9bbeb3b29cd154fd06dd896a3c 93 PANTHER PTHR32552:SF10 54 91 1.5E-12 T 23-04-2016 NIDE_RS02190 4dfa5148062d87c28b4a462e73eae5da 201 SUPERFAMILY SSF53254 1 200 2.5E-69 T 23-04-2016 IPR029033 Histidine phosphatase superfamily NIDE_RS02190 4dfa5148062d87c28b4a462e73eae5da 201 Gene3D G3DSA:3.40.50.1240 1 198 4.2E-84 T 23-04-2016 IPR029033 Histidine phosphatase superfamily NIDE_RS02190 4dfa5148062d87c28b4a462e73eae5da 201 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 1 201 40.694 T 23-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 NIDE_RS02190 4dfa5148062d87c28b4a462e73eae5da 201 PANTHER PTHR11931 1 201 9.3E-124 T 23-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 NIDE_RS02190 4dfa5148062d87c28b4a462e73eae5da 201 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 23-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 NIDE_RS02190 4dfa5148062d87c28b4a462e73eae5da 201 SMART SM00855 3 162 7.5E-27 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 NIDE_RS02190 4dfa5148062d87c28b4a462e73eae5da 201 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 196 2.7E-46 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 NIDE_RS02190 4dfa5148062d87c28b4a462e73eae5da 201 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 120 201 3.8E-29 T 23-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 NIDE_RS02190 4dfa5148062d87c28b4a462e73eae5da 201 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 3 120 9.8E-51 T 23-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 NIDE_RS02190 4dfa5148062d87c28b4a462e73eae5da 201 PIRSF PIRSF000709 2 193 1.1E-13 T 23-04-2016 NIDE_RS06375 b65ee8306fde72bfe008eb668fe44a20 758 SUPERFAMILY SSF81301 330 598 2.71E-42 T 23-04-2016 NIDE_RS06375 b65ee8306fde72bfe008eb668fe44a20 758 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 343 591 4.3E-42 T 23-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 NIDE_RS06375 b65ee8306fde72bfe008eb668fe44a20 758 SUPERFAMILY SSF81593 610 755 3.45E-23 T 23-04-2016 NIDE_RS06375 b65ee8306fde72bfe008eb668fe44a20 758 PANTHER PTHR30621 296 758 1.6E-61 T 23-04-2016 NIDE_RS06375 b65ee8306fde72bfe008eb668fe44a20 758 Gene3D G3DSA:3.30.460.10 430 598 4.2E-42 T 23-04-2016 NIDE_RS06375 b65ee8306fde72bfe008eb668fe44a20 758 Pfam PF08335 GlnD PII-uridylyltransferase 622 755 4.5E-21 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 NIDE_RS13765 fa53a9dc358229f8a5eb3bd287093d4f 413 Gene3D G3DSA:3.40.50.150 93 258 2.8E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13765 fa53a9dc358229f8a5eb3bd287093d4f 413 SUPERFAMILY SSF53335 58 254 5.63E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS13765 fa53a9dc358229f8a5eb3bd287093d4f 413 Pfam PF08484 C-methyltransferase C-terminal domain 250 406 4.7E-46 T 23-04-2016 IPR013691 C-methyltransferase KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.-|UniPathway: UPA00853 NIDE_RS13765 fa53a9dc358229f8a5eb3bd287093d4f 413 Pfam PF08421 Putative zinc binding domain 9 70 2.9E-20 T 23-04-2016 IPR013630 Methyltransferase putative zinc binding domain KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.-|UniPathway: UPA00853 NIDE_RS13765 fa53a9dc358229f8a5eb3bd287093d4f 413 Pfam PF13489 Methyltransferase domain 95 244 4.7E-16 T 23-04-2016 NIDE_RS01260 3ce65876271fd46bf3470ad7c2b95124 576 Pfam PF00691 OmpA family 460 538 6.2E-7 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS01260 3ce65876271fd46bf3470ad7c2b95124 576 Gene3D G3DSA:3.30.1330.60 459 569 1.2E-12 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS01260 3ce65876271fd46bf3470ad7c2b95124 576 SUPERFAMILY SSF103088 453 568 2.22E-11 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS10990 ec4a258e98b263d1f58e211f2a7efce4 373 Gene3D G3DSA:3.40.50.2000 168 349 2.2E-39 T 23-04-2016 NIDE_RS10990 ec4a258e98b263d1f58e211f2a7efce4 373 Gene3D G3DSA:3.40.50.2000 12 151 2.3E-10 T 23-04-2016 NIDE_RS10990 ec4a258e98b263d1f58e211f2a7efce4 373 SUPERFAMILY SSF53756 6 349 1.41E-56 T 23-04-2016 NIDE_RS10990 ec4a258e98b263d1f58e211f2a7efce4 373 PANTHER PTHR30160:SF7 7 357 2.8E-28 T 23-04-2016 NIDE_RS10990 ec4a258e98b263d1f58e211f2a7efce4 373 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 128 318 6.8E-19 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 NIDE_RS10990 ec4a258e98b263d1f58e211f2a7efce4 373 PANTHER PTHR30160 7 357 2.8E-28 T 23-04-2016 NIDE_RS15065 82ee4ed44ac7ce763693b0fc21ea8584 317 SUPERFAMILY SSF56436 60 286 5.65E-64 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS15065 82ee4ed44ac7ce763693b0fc21ea8584 317 PANTHER PTHR23150 8 287 1.7E-62 T 23-04-2016 NIDE_RS15065 82ee4ed44ac7ce763693b0fc21ea8584 317 Gene3D G3DSA:3.90.1580.10 53 288 7.4E-63 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS15065 82ee4ed44ac7ce763693b0fc21ea8584 317 Pfam PF03781 Sulfatase-modifying factor enzyme 1 61 285 9.7E-54 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS00145 71620e5b0cfcbf839f888685259fb1d3 146 Pfam PF07813 LTXXQ motif family protein 36 135 9.4E-11 T 23-04-2016 IPR012899 LTXXQ motif family protein GO:0042597 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 PANTHER PTHR21090:SF5 1 442 3.8E-180 T 23-04-2016 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 PIRSF PIRSF000505 1 439 3.7E-122 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 437 33.827 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 ProSitePatterns PS00104 EPSP synthase signature 1. 88 102 - T 23-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 ProSitePatterns PS00885 EPSP synthase signature 2. 342 360 - T 23-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 PANTHER PTHR21090 1 442 3.8E-180 T 23-04-2016 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 434 8.3E-127 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 Gene3D G3DSA:3.65.10.10 203 433 4.0E-63 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 SUPERFAMILY SSF55205 4 434 7.76E-134 T 23-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 431 4.6E-121 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 NIDE_RS01955 9b785f2cf43026e912e6de92def0b8a9 442 Gene3D G3DSA:3.65.10.10 20 202 1.4E-48 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 28 238 1.4E-63 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 Gene3D G3DSA:1.20.120.220 80 241 2.0E-48 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 SUPERFAMILY SSF81336 79 235 1.18E-45 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 PANTHER PTHR11410 4 245 2.6E-80 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 Hamap MF_01393 ATP synthase subunit a [atpB]. 1 242 15.734 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 ProSitePatterns PS00449 ATP synthase a subunit signature. 171 180 - T 23-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 PRINTS PR00123 ATP synthase A subunit signature 168 190 1.3E-32 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 PRINTS PR00123 ATP synthase A subunit signature 87 103 1.3E-32 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 PRINTS PR00123 ATP synthase A subunit signature 148 163 1.3E-32 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 PRINTS PR00123 ATP synthase A subunit signature 222 237 1.3E-32 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 NIDE_RS17065 0233e6ddd66f08ad36c916dbd1de9124 249 Pfam PF00119 ATP synthase A chain 31 235 1.0E-54 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 NIDE_RS00850 7781a1db61853e5f4df97a4d91ad8633 182 Pfam PF03748 Flagellar basal body-associated protein FliL 84 177 2.0E-11 T 23-04-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 NIDE_RS08700 dedb2812e4d8d45ffbdc171afa1a870b 373 Pfam PF06250 Protein of unknown function (DUF1016) 24 341 1.2E-110 T 23-04-2016 IPR009362 Protein of unknown function DUF1016 NIDE_RS08700 dedb2812e4d8d45ffbdc171afa1a870b 373 PANTHER PTHR30547:SF5 7 346 5.4E-137 T 23-04-2016 NIDE_RS08700 dedb2812e4d8d45ffbdc171afa1a870b 373 PANTHER PTHR30547 7 346 5.4E-137 T 23-04-2016 NIDE_RS18835 6cb9fbc32d0e27ec9f71d3f96011f8fb 132 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 11 95 5.0E-20 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 NIDE_RS18835 6cb9fbc32d0e27ec9f71d3f96011f8fb 132 Gene3D G3DSA:3.30.300.20 6 118 1.4E-34 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta NIDE_RS18835 6cb9fbc32d0e27ec9f71d3f96011f8fb 132 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 6 116 1.8E-29 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 NIDE_RS18835 6cb9fbc32d0e27ec9f71d3f96011f8fb 132 PANTHER PTHR33515 8 117 1.8E-33 T 23-04-2016 NIDE_RS18835 6cb9fbc32d0e27ec9f71d3f96011f8fb 132 Pfam PF02033 Ribosome-binding factor A 8 111 3.1E-27 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 NIDE_RS18835 6cb9fbc32d0e27ec9f71d3f96011f8fb 132 SUPERFAMILY SSF89919 5 113 2.62E-29 T 23-04-2016 IPR023799 Ribosome-binding factor A domain NIDE_RS18835 6cb9fbc32d0e27ec9f71d3f96011f8fb 132 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 4 118 20.625 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 NIDE_RS04895 313dbcebf45a975b97e5d6887cb8b890 171 Pfam PF00515 Tetratricopeptide repeat 53 86 1.2E-6 T 23-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 NIDE_RS04895 313dbcebf45a975b97e5d6887cb8b890 171 PANTHER PTHR23083 14 166 7.9E-27 T 23-04-2016 NIDE_RS04895 313dbcebf45a975b97e5d6887cb8b890 171 SUPERFAMILY SSF48452 20 165 2.91E-30 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS04895 313dbcebf45a975b97e5d6887cb8b890 171 Pfam PF13424 Tetratricopeptide repeat 90 152 9.0E-12 T 23-04-2016 NIDE_RS04895 313dbcebf45a975b97e5d6887cb8b890 171 SMART SM00028 123 156 3.2E-9 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS04895 313dbcebf45a975b97e5d6887cb8b890 171 SMART SM00028 53 86 1.7E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS04895 313dbcebf45a975b97e5d6887cb8b890 171 SMART SM00028 87 120 7.5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS04895 313dbcebf45a975b97e5d6887cb8b890 171 Gene3D G3DSA:1.25.40.10 19 166 2.9E-35 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS04895 313dbcebf45a975b97e5d6887cb8b890 171 Pfam PF07720 Tetratricopeptide repeat 27 47 3.5E-4 T 23-04-2016 IPR011716 Tetratricopeptide TPR-3 NIDE_RS16950 ee44193b187dccf73d1d4ba685139859 274 Gene3D G3DSA:3.40.50.150 72 263 7.0E-44 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS16950 ee44193b187dccf73d1d4ba685139859 274 PANTHER PTHR10108 77 222 1.3E-46 T 23-04-2016 NIDE_RS16950 ee44193b187dccf73d1d4ba685139859 274 Pfam PF13847 Methyltransferase domain 75 221 3.1E-30 T 23-04-2016 IPR025714 Methyltransferase domain NIDE_RS16950 ee44193b187dccf73d1d4ba685139859 274 SUPERFAMILY SSF53335 63 229 1.52E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS16950 ee44193b187dccf73d1d4ba685139859 274 PANTHER PTHR10108:SF924 77 222 1.3E-46 T 23-04-2016 NIDE_RS14955 9bd1280652dd4917e027099552a8bc30 97 PANTHER PTHR33162 1 80 1.7E-15 T 23-04-2016 NIDE_RS14955 9bd1280652dd4917e027099552a8bc30 97 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 6.0E-18 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NIDE_RS14955 9bd1280652dd4917e027099552a8bc30 97 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 2 78 21.095 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NIDE_RS14955 9bd1280652dd4917e027099552a8bc30 97 Pfam PF02416 mttA/Hcf106 family 5 49 5.0E-15 T 23-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 NIDE_RS05210 b9036c78558f8ba10d6e6c4a46879067 200 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 178 1.8E-52 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 NIDE_RS05210 b9036c78558f8ba10d6e6c4a46879067 200 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 199 27.54 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 NIDE_RS05210 b9036c78558f8ba10d6e6c4a46879067 200 Gene3D G3DSA:3.40.50.300 1 197 6.2E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05210 b9036c78558f8ba10d6e6c4a46879067 200 SUPERFAMILY SSF52540 1 195 1.12E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05210 b9036c78558f8ba10d6e6c4a46879067 200 Pfam PF01121 Dephospho-CoA kinase 3 178 8.8E-56 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 NIDE_RS05210 b9036c78558f8ba10d6e6c4a46879067 200 PANTHER PTHR10695 1 177 1.1E-71 T 23-04-2016 NIDE_RS06080 fd14fd5c520826a9e3e1b4e9b53f8246 97 PANTHER PTHR11620 4 94 6.1E-22 T 23-04-2016 NIDE_RS06080 fd14fd5c520826a9e3e1b4e9b53f8246 97 Pfam PF00276 Ribosomal protein L23 7 92 7.1E-31 T 23-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 NIDE_RS06080 fd14fd5c520826a9e3e1b4e9b53f8246 97 ProSitePatterns PS00050 Ribosomal protein L23 signature. 79 94 - T 23-04-2016 IPR001014 Ribosomal protein L23/L25, conserved site NIDE_RS06080 fd14fd5c520826a9e3e1b4e9b53f8246 97 SUPERFAMILY SSF54189 4 95 1.37E-29 T 23-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS06080 fd14fd5c520826a9e3e1b4e9b53f8246 97 Gene3D G3DSA:3.30.70.330 4 96 9.4E-34 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 NIDE_RS06080 fd14fd5c520826a9e3e1b4e9b53f8246 97 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 6 96 21.526 T 23-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 NIDE_RS17080 8397ba185f458eeb41f48ff9422c1198 293 PANTHER PTHR11825 2 283 3.1E-84 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS17080 8397ba185f458eeb41f48ff9422c1198 293 ProSitePatterns PS00770 Aminotransferases class-IV signature. 186 215 - T 23-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS17080 8397ba185f458eeb41f48ff9422c1198 293 Gene3D G3DSA:3.30.470.10 1 120 1.0E-36 T 23-04-2016 NIDE_RS17080 8397ba185f458eeb41f48ff9422c1198 293 Gene3D G3DSA:3.20.10.10 127 283 2.8E-50 T 23-04-2016 NIDE_RS17080 8397ba185f458eeb41f48ff9422c1198 293 SUPERFAMILY SSF56752 1 283 1.02E-85 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS17080 8397ba185f458eeb41f48ff9422c1198 293 Pfam PF01063 Amino-transferase class IV 29 260 1.5E-60 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 NIDE_RS07065 b3b0090f7bd0481ea1004e2d8d1dd4b3 278 SMART SM00331 12 254 3.9E-39 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS07065 b3b0090f7bd0481ea1004e2d8d1dd4b3 278 PANTHER PTHR13832 83 258 1.7E-63 T 23-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 NIDE_RS07065 b3b0090f7bd0481ea1004e2d8d1dd4b3 278 PANTHER PTHR13832 9 67 1.7E-63 T 23-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 NIDE_RS07065 b3b0090f7bd0481ea1004e2d8d1dd4b3 278 SMART SM00332 3 252 6.4E-25 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS07065 b3b0090f7bd0481ea1004e2d8d1dd4b3 278 SUPERFAMILY SSF81606 5 255 2.22E-63 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS07065 b3b0090f7bd0481ea1004e2d8d1dd4b3 278 PANTHER PTHR13832:SF278 83 258 1.7E-63 T 23-04-2016 NIDE_RS07065 b3b0090f7bd0481ea1004e2d8d1dd4b3 278 PANTHER PTHR13832:SF278 9 67 1.7E-63 T 23-04-2016 NIDE_RS07065 b3b0090f7bd0481ea1004e2d8d1dd4b3 278 Pfam PF13672 Protein phosphatase 2C 18 215 1.6E-15 T 23-04-2016 NIDE_RS07065 b3b0090f7bd0481ea1004e2d8d1dd4b3 278 Gene3D G3DSA:3.60.40.10 4 254 3.6E-68 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 NIDE_RS10770 9cf48d174be9425b964b087293069512 126 Gene3D G3DSA:3.40.50.2300 4 125 4.1E-39 T 23-04-2016 NIDE_RS10770 9cf48d174be9425b964b087293069512 126 PANTHER PTHR26402 7 126 3.2E-37 T 23-04-2016 NIDE_RS10770 9cf48d174be9425b964b087293069512 126 Pfam PF00072 Response regulator receiver domain 9 122 6.0E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS10770 9cf48d174be9425b964b087293069512 126 SUPERFAMILY SSF52172 5 125 1.99E-35 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS10770 9cf48d174be9425b964b087293069512 126 SMART SM00448 7 121 6.3E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS03935 6a9ff8687d2a15da56c9ff2d0755d48b 330 PANTHER PTHR11101 7 319 2.7E-94 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 NIDE_RS03935 6a9ff8687d2a15da56c9ff2d0755d48b 330 Pfam PF01384 Phosphate transporter family 22 162 1.2E-33 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 NIDE_RS03935 6a9ff8687d2a15da56c9ff2d0755d48b 330 Pfam PF01384 Phosphate transporter family 170 319 1.6E-51 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 NIDE_RS19045 16d233d07eb3d7d7e2c86776d8e67df8 143 SUPERFAMILY SSF54593 6 140 3.49E-27 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS19045 16d233d07eb3d7d7e2c86776d8e67df8 143 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 127 7.2E-14 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIDE_RS19045 16d233d07eb3d7d7e2c86776d8e67df8 143 PANTHER PTHR36113 6 136 1.1E-14 T 23-04-2016 NIDE_RS19045 16d233d07eb3d7d7e2c86776d8e67df8 143 Gene3D G3DSA:3.10.180.10 2 130 3.4E-25 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 SMART SM00382 303 470 6.1E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 SMART SM00382 26 196 7.2E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 Pfam PF12848 ABC transporter 183 266 4.7E-22 T 23-04-2016 IPR032781 ABC-transporter extension domain NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 Pfam PF00005 ABC transporter 295 425 1.4E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 Pfam PF00005 ABC transporter 19 144 2.1E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 Gene3D G3DSA:3.40.50.300 1 231 4.3E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 Gene3D G3DSA:3.40.50.300 277 498 8.0E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 SUPERFAMILY SSF52540 258 481 9.91E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 SUPERFAMILY SSF52540 2 217 1.38E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 PANTHER PTHR19211 552 591 4.0E-203 T 23-04-2016 NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 PANTHER PTHR19211 1 482 4.0E-203 T 23-04-2016 NIDE_RS16250 1073b237f75ef4b8444ef43f9b5293a5 613 Pfam PF16326 ABC transporter C-terminal domain 534 599 1.2E-9 T 23-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 NIDE_RS21205 2cad41d91b11cbcf5c61809eda5caf3c 116 SUPERFAMILY SSF75169 7 116 6.67E-9 T 23-04-2016 IPR027396 DsrEFH-like NIDE_RS21205 2cad41d91b11cbcf5c61809eda5caf3c 116 Gene3D G3DSA:3.40.1260.10 6 116 2.1E-7 T 23-04-2016 IPR027396 DsrEFH-like NIDE_RS03420 817a9bcf1b5662769034e2d041d9ff3a 147 Pfam PF07238 PilZ domain 29 133 9.9E-13 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS03420 817a9bcf1b5662769034e2d041d9ff3a 147 SUPERFAMILY SSF141371 28 140 8.24E-6 T 23-04-2016 NIDE_RS03420 817a9bcf1b5662769034e2d041d9ff3a 147 Gene3D G3DSA:2.40.10.220 30 142 8.9E-11 T 23-04-2016 NIDE_RS17305 2b417a6f1ec665050676e240639874af 268 PANTHER PTHR10108 21 198 4.1E-17 T 23-04-2016 NIDE_RS17305 2b417a6f1ec665050676e240639874af 268 Gene3D G3DSA:3.40.50.150 20 190 9.7E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS17305 2b417a6f1ec665050676e240639874af 268 SUPERFAMILY SSF53335 16 199 1.53E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS17305 2b417a6f1ec665050676e240639874af 268 Pfam PF13649 Methyltransferase domain 36 132 2.7E-11 T 23-04-2016 NIDE_RS09750 319020f48bba9a255f8ae1d82c048ae6 87 Pfam PF01527 Transposase 2 70 4.7E-20 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 NIDE_RS09750 319020f48bba9a255f8ae1d82c048ae6 87 SUPERFAMILY SSF46689 1 68 1.79E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS09750 319020f48bba9a255f8ae1d82c048ae6 87 PANTHER PTHR33609 1 87 6.1E-37 T 23-04-2016 NIDE_RS09750 319020f48bba9a255f8ae1d82c048ae6 87 Gene3D G3DSA:1.10.10.60 17 82 1.7E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS09280 dc7847cb3529c1fc47361bb1334a1a6c 96 SUPERFAMILY SSF51182 13 94 9.93E-17 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS09280 dc7847cb3529c1fc47361bb1334a1a6c 96 Pfam PF07883 Cupin domain 27 91 4.8E-11 T 23-04-2016 IPR013096 Cupin 2, conserved barrel NIDE_RS09280 dc7847cb3529c1fc47361bb1334a1a6c 96 Gene3D G3DSA:2.60.120.10 18 95 4.1E-13 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS00565 82e0d5f1037829d4616dae5f4427ee54 757 Pfam PF13550 Putative phage tail protein 213 384 9.7E-33 T 23-04-2016 IPR032876 Tip attachment protein J NIDE_RS18495 fdd9da6a8b95f0389f70d73cb1a89306 365 Gene3D G3DSA:1.10.760.10 67 214 1.4E-49 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS18495 fdd9da6a8b95f0389f70d73cb1a89306 365 PANTHER PTHR30600:SF7 64 361 2.4E-102 T 23-04-2016 NIDE_RS18495 fdd9da6a8b95f0389f70d73cb1a89306 365 SUPERFAMILY SSF46626 200 351 8.14E-38 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS18495 fdd9da6a8b95f0389f70d73cb1a89306 365 PANTHER PTHR30600 64 361 2.4E-102 T 23-04-2016 NIDE_RS18495 fdd9da6a8b95f0389f70d73cb1a89306 365 Pfam PF00034 Cytochrome c 231 351 2.2E-5 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS18495 fdd9da6a8b95f0389f70d73cb1a89306 365 PIRSF PIRSF000294 50 365 2.1E-102 T 23-04-2016 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 NIDE_RS18495 fdd9da6a8b95f0389f70d73cb1a89306 365 SUPERFAMILY SSF46626 60 210 1.15E-49 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS18495 fdd9da6a8b95f0389f70d73cb1a89306 365 Gene3D G3DSA:1.10.760.10 215 357 1.2E-51 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS18495 fdd9da6a8b95f0389f70d73cb1a89306 365 Pfam PF03150 Di-haem cytochrome c peroxidase 77 223 7.9E-53 T 23-04-2016 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 NIDE_RS02560 359381df4446593fd4ad5a08ece02324 962 SMART SM00912 26 142 1.1E-17 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS02560 359381df4446593fd4ad5a08ece02324 962 Pfam PF05860 haemagglutination activity domain 30 137 6.5E-27 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS02560 359381df4446593fd4ad5a08ece02324 962 Gene3D G3DSA:2.160.20.10 29 348 3.1E-36 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS02560 359381df4446593fd4ad5a08ece02324 962 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 56 136 3.7E-23 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS02560 359381df4446593fd4ad5a08ece02324 962 SUPERFAMILY SSF51126 37 331 2.39E-33 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS01680 3b2fb619c0603fb12ec738b8796154c5 162 Pfam PF04519 Polymer-forming cytoskeletal 41 136 2.8E-23 T 23-04-2016 IPR007607 Protein of unknown function DUF583 NIDE_RS01680 3b2fb619c0603fb12ec738b8796154c5 162 PANTHER PTHR35024:SF2 13 140 2.4E-24 T 23-04-2016 NIDE_RS01680 3b2fb619c0603fb12ec738b8796154c5 162 PANTHER PTHR35024 13 140 2.4E-24 T 23-04-2016 NIDE_RS16000 e5844f09d87b119763fad4482a280565 318 Gene3D G3DSA:3.40.250.10 189 299 1.4E-18 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS16000 e5844f09d87b119763fad4482a280565 318 PANTHER PTHR30353:SF6 1 298 6.4E-69 T 23-04-2016 NIDE_RS16000 e5844f09d87b119763fad4482a280565 318 Pfam PF09335 SNARE associated Golgi protein 29 155 2.2E-11 T 23-04-2016 IPR032816 SNARE associated Golgi protein NIDE_RS16000 e5844f09d87b119763fad4482a280565 318 PANTHER PTHR30353 1 298 6.4E-69 T 23-04-2016 IPR032818 DedA family NIDE_RS16000 e5844f09d87b119763fad4482a280565 318 Pfam PF00581 Rhodanese-like domain 207 298 3.0E-8 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS16000 e5844f09d87b119763fad4482a280565 318 SMART SM00450 205 303 1.7E-9 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS16000 e5844f09d87b119763fad4482a280565 318 SUPERFAMILY SSF52821 191 299 1.31E-22 T 23-04-2016 IPR001763 Rhodanese-like domain NIDE_RS06945 11d01534f18146689b474fde99f4ab41 270 PANTHER PTHR30188 9 266 7.1E-56 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 NIDE_RS06945 11d01534f18146689b474fde99f4ab41 270 PANTHER PTHR30188:SF4 9 266 7.1E-56 T 23-04-2016 NIDE_RS06945 11d01534f18146689b474fde99f4ab41 270 Pfam PF02405 Permease MlaE 56 266 1.9E-61 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 NIDE_RS20760 26dd531f8635b12b172c9bc22821c4b3 387 Pfam PF13439 Glycosyltransferase Family 4 15 190 1.0E-10 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS20760 26dd531f8635b12b172c9bc22821c4b3 387 SUPERFAMILY SSF53756 3 383 8.37E-80 T 23-04-2016 NIDE_RS20760 26dd531f8635b12b172c9bc22821c4b3 387 Pfam PF00534 Glycosyl transferases group 1 201 362 9.4E-39 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS20760 26dd531f8635b12b172c9bc22821c4b3 387 PANTHER PTHR12526 1 41 9.0E-62 T 23-04-2016 NIDE_RS20760 26dd531f8635b12b172c9bc22821c4b3 387 PANTHER PTHR12526 58 383 9.0E-62 T 23-04-2016 NIDE_RS20760 26dd531f8635b12b172c9bc22821c4b3 387 Gene3D G3DSA:3.40.50.2000 207 359 1.8E-30 T 23-04-2016 NIDE_RS15125 31b1f269fefd92298b862a9c9fab9c10 301 Gene3D G3DSA:2.60.40.1120 211 254 1.3E-8 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain NIDE_RS15125 31b1f269fefd92298b862a9c9fab9c10 301 SUPERFAMILY SSF49452 208 262 2.94E-10 T 23-04-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 NIDE_RS15125 31b1f269fefd92298b862a9c9fab9c10 301 Pfam PF14686 Polysaccharide lyase family 4, domain II 212 254 3.7E-7 T 23-04-2016 IPR029413 Rhamnogalacturonan lyase, domain II NIDE_RS13920 4c95b3bf69653133b777b03897aec484 280 Pfam PF06230 Protein of unknown function (DUF1009) 70 277 2.8E-77 T 23-04-2016 IPR010415 Protein of unknown function DUF1009 NIDE_RS13920 4c95b3bf69653133b777b03897aec484 280 PANTHER PTHR39962:SF1 9 279 3.4E-81 T 23-04-2016 NIDE_RS13920 4c95b3bf69653133b777b03897aec484 280 PANTHER PTHR39962 9 279 3.4E-81 T 23-04-2016 NIDE_RS15990 e6ec6897229178a319d0aeaa2bee1c68 374 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 48 356 1.8E-52 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS15990 e6ec6897229178a319d0aeaa2bee1c68 374 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 75 260 3.9E-14 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS15990 e6ec6897229178a319d0aeaa2bee1c68 374 Gene3D G3DSA:2.40.50.100 74 106 1.9E-11 T 23-04-2016 NIDE_RS15990 e6ec6897229178a319d0aeaa2bee1c68 374 Gene3D G3DSA:2.40.50.100 167 198 1.9E-11 T 23-04-2016 NIDE_RS15990 e6ec6897229178a319d0aeaa2bee1c68 374 PANTHER PTHR30469 1 367 2.4E-68 T 23-04-2016 NIDE_RS15990 e6ec6897229178a319d0aeaa2bee1c68 374 SUPERFAMILY SSF111369 63 279 9.15E-31 T 23-04-2016 NIDE_RS15990 e6ec6897229178a319d0aeaa2bee1c68 374 PANTHER PTHR30469:SF11 1 367 2.4E-68 T 23-04-2016 NIDE_RS05215 6fed90f9cdf04f456e0c902a4c3fa4d2 354 Pfam PF13229 Right handed beta helix region 125 283 1.1E-11 T 23-04-2016 NIDE_RS05215 6fed90f9cdf04f456e0c902a4c3fa4d2 354 Gene3D G3DSA:2.160.20.10 56 336 3.2E-25 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS05215 6fed90f9cdf04f456e0c902a4c3fa4d2 354 SUPERFAMILY SSF51126 47 341 1.18E-36 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS05215 6fed90f9cdf04f456e0c902a4c3fa4d2 354 Pfam PF01095 Pectinesterase 49 111 2.8E-9 T 23-04-2016 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|KEGG: 00500+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248|UniPathway: UPA00545 NIDE_RS05495 478e1ae911886f6b01be24875a633f0e 282 SUPERFAMILY SSF56436 46 275 4.14E-68 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS05495 478e1ae911886f6b01be24875a633f0e 282 Gene3D G3DSA:3.90.1580.10 44 276 9.3E-72 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS05495 478e1ae911886f6b01be24875a633f0e 282 PANTHER PTHR23150 47 279 5.6E-60 T 23-04-2016 NIDE_RS05495 478e1ae911886f6b01be24875a633f0e 282 Pfam PF03781 Sulfatase-modifying factor enzyme 1 48 274 8.4E-54 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS04920 fca55a7c53517e7322bfaf081d6be8c1 750 SUPERFAMILY SSF55486 298 391 8.76E-8 T 23-04-2016 NIDE_RS04920 fca55a7c53517e7322bfaf081d6be8c1 750 Gene3D G3DSA:3.40.390.10 296 395 1.1E-6 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 Gene3D G3DSA:1.20.1600.10 344 458 1.5E-105 T 23-04-2016 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 Gene3D G3DSA:1.20.1600.10 135 306 1.5E-105 T 23-04-2016 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 Gene3D G3DSA:1.20.1600.10 48 85 1.5E-105 T 23-04-2016 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 PANTHER PTHR30203 1 476 5.9E-104 T 23-04-2016 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 Pfam PF02321 Outer membrane efflux protein 273 455 3.1E-23 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 Pfam PF02321 Outer membrane efflux protein 60 247 1.6E-24 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 8 457 6.1E-105 T 23-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 SUPERFAMILY SSF56954 1 459 3.27E-103 T 23-04-2016 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 PANTHER PTHR30203:SF14 1 476 5.9E-104 T 23-04-2016 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 Gene3D G3DSA:2.20.200.10 307 341 1.3E-8 T 23-04-2016 NIDE_RS15975 a5c1f929da4c2fe3e3cf6f7eadf5c21c 481 Gene3D G3DSA:2.20.200.10 123 134 1.3E-8 T 23-04-2016 NIDE_RS14940 bf2010cdbf375301b4b13c8748cc7d4a 157 SUPERFAMILY SSF50156 57 123 1.58E-9 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS14940 bf2010cdbf375301b4b13c8748cc7d4a 157 Gene3D G3DSA:2.30.42.10 57 123 1.8E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS20860 4a29c4fd76931a55616edcb970dfe7ad 105 PANTHER PTHR23083 6 92 8.1E-12 T 23-04-2016 NIDE_RS20860 4a29c4fd76931a55616edcb970dfe7ad 105 Gene3D G3DSA:1.25.40.10 7 91 1.2E-16 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20860 4a29c4fd76931a55616edcb970dfe7ad 105 SUPERFAMILY SSF48452 7 92 1.49E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS20860 4a29c4fd76931a55616edcb970dfe7ad 105 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 12 76 1.3E-6 T 23-04-2016 NIDE_RS20860 4a29c4fd76931a55616edcb970dfe7ad 105 SMART SM00028 20 53 0.017 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS20860 4a29c4fd76931a55616edcb970dfe7ad 105 SMART SM00028 54 87 75.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS05490 4f08bcd13d5f7a467e06298ef3c65143 219 Pfam PF13649 Methyltransferase domain 47 141 1.8E-13 T 23-04-2016 NIDE_RS05490 4f08bcd13d5f7a467e06298ef3c65143 219 PANTHER PTHR10108:SF785 47 156 3.7E-23 T 23-04-2016 NIDE_RS05490 4f08bcd13d5f7a467e06298ef3c65143 219 PANTHER PTHR10108 47 156 3.7E-23 T 23-04-2016 NIDE_RS05490 4f08bcd13d5f7a467e06298ef3c65143 219 SUPERFAMILY SSF53335 20 202 4.8E-32 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS05490 4f08bcd13d5f7a467e06298ef3c65143 219 Gene3D G3DSA:3.40.50.150 22 195 4.7E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS15305 5aa426330eae5c15abf8502532630965 577 Pfam PF02543 Carbamoyltransferase N-terminus 3 345 1.6E-65 T 23-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 NIDE_RS15305 5aa426330eae5c15abf8502532630965 577 PANTHER PTHR34847 1 566 2.6E-129 T 23-04-2016 NIDE_RS15305 5aa426330eae5c15abf8502532630965 577 Pfam PF16861 Carbamoyltransferase C-terminus 398 564 1.5E-69 T 23-04-2016 IPR031730 Carbamoyltransferase, C-terminal NIDE_RS15305 5aa426330eae5c15abf8502532630965 577 SUPERFAMILY SSF53067 261 347 3.31E-15 T 23-04-2016 NIDE_RS15305 5aa426330eae5c15abf8502532630965 577 SUPERFAMILY SSF53067 13 71 3.31E-15 T 23-04-2016 NIDE_RS15305 5aa426330eae5c15abf8502532630965 577 SUPERFAMILY SSF53067 128 213 3.31E-15 T 23-04-2016 NIDE_RS06850 75a2b0c5d905aa6633a52cb17c00efab 411 Pfam PF11873 Domain of unknown function (DUF3393) 46 236 1.6E-57 T 23-04-2016 IPR024570 Murein transglycosylase-C, N-terminal NIDE_RS06850 75a2b0c5d905aa6633a52cb17c00efab 411 Pfam PF01464 Transglycosylase SLT domain 245 363 1.6E-26 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 NIDE_RS06850 75a2b0c5d905aa6633a52cb17c00efab 411 PANTHER PTHR21666 220 402 3.2E-36 T 23-04-2016 NIDE_RS06850 75a2b0c5d905aa6633a52cb17c00efab 411 SUPERFAMILY SSF53955 224 400 5.38E-32 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS06850 75a2b0c5d905aa6633a52cb17c00efab 411 Gene3D G3DSA:1.10.530.10 202 403 7.9E-38 T 23-04-2016 NIDE_RS06850 75a2b0c5d905aa6633a52cb17c00efab 411 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 258 286 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 NIDE_RS09070 bd405379d08ec5a7a42dd5562dd3ce76 604 PANTHER PTHR35370:SF1 2 604 1.5E-198 T 23-04-2016 NIDE_RS09070 bd405379d08ec5a7a42dd5562dd3ce76 604 PIRSF PIRSF028304 1 603 9.2E-200 T 23-04-2016 IPR010272 Type VI secretion system, TssF-like NIDE_RS09070 bd405379d08ec5a7a42dd5562dd3ce76 604 PANTHER PTHR35370 2 604 1.5E-198 T 23-04-2016 NIDE_RS09070 bd405379d08ec5a7a42dd5562dd3ce76 604 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 604 2.6E-219 T 23-04-2016 IPR010272 Type VI secretion system, TssF-like NIDE_RS09070 bd405379d08ec5a7a42dd5562dd3ce76 604 Pfam PF05947 Type VI secretion system, ImpG, VasA, VC_A0110 6 602 2.6E-226 T 23-04-2016 IPR010272 Type VI secretion system, TssF-like NIDE_RS13825 def024b9616cd252c4bda3b8d2e3d2fd 359 Pfam PF13439 Glycosyltransferase Family 4 16 171 1.5E-12 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS13825 def024b9616cd252c4bda3b8d2e3d2fd 359 PANTHER PTHR12526 1 358 2.1E-61 T 23-04-2016 NIDE_RS13825 def024b9616cd252c4bda3b8d2e3d2fd 359 Pfam PF00534 Glycosyl transferases group 1 178 334 2.7E-33 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS13825 def024b9616cd252c4bda3b8d2e3d2fd 359 SUPERFAMILY SSF53756 6 358 1.35E-72 T 23-04-2016 NIDE_RS13825 def024b9616cd252c4bda3b8d2e3d2fd 359 PANTHER PTHR12526:SF399 1 358 2.1E-61 T 23-04-2016 NIDE_RS13825 def024b9616cd252c4bda3b8d2e3d2fd 359 Gene3D G3DSA:3.40.50.2000 165 335 3.1E-27 T 23-04-2016 NIDE_RS01675 7a5802bf9df85c1ea9d4432c6c69fe5d 283 SUPERFAMILY SSF110849 28 156 1.2E-28 T 23-04-2016 IPR003115 ParB/Sulfiredoxin NIDE_RS01675 7a5802bf9df85c1ea9d4432c6c69fe5d 283 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 27 204 1.4E-56 T 23-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 NIDE_RS01675 7a5802bf9df85c1ea9d4432c6c69fe5d 283 Pfam PF02195 ParB-like nuclease domain 30 118 6.2E-27 T 23-04-2016 IPR003115 ParB/Sulfiredoxin NIDE_RS01675 7a5802bf9df85c1ea9d4432c6c69fe5d 283 PANTHER PTHR33375 24 281 3.2E-89 T 23-04-2016 NIDE_RS01675 7a5802bf9df85c1ea9d4432c6c69fe5d 283 Gene3D G3DSA:3.90.1530.10 22 125 2.9E-36 T 23-04-2016 NIDE_RS01675 7a5802bf9df85c1ea9d4432c6c69fe5d 283 SUPERFAMILY SSF109709 111 220 2.75E-33 T 23-04-2016 NIDE_RS01675 7a5802bf9df85c1ea9d4432c6c69fe5d 283 SMART SM00470 29 119 6.0E-36 T 23-04-2016 IPR003115 ParB/Sulfiredoxin NIDE_RS20340 71ef7c69bda9951452c883f68bbf4bb4 272 SUPERFAMILY SSF51735 6 260 2.25E-22 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS20340 71ef7c69bda9951452c883f68bbf4bb4 272 Gene3D G3DSA:3.40.50.720 2 217 1.1E-15 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS20340 71ef7c69bda9951452c883f68bbf4bb4 272 PANTHER PTHR10366:SF430 5 262 2.9E-15 T 23-04-2016 NIDE_RS20340 71ef7c69bda9951452c883f68bbf4bb4 272 PANTHER PTHR10366 5 262 2.9E-15 T 23-04-2016 NIDE_RS00280 14e207df931d0debcc564ca99be0f740 541 Pfam PF03092 BT1 family 352 533 1.3E-13 T 23-04-2016 IPR004324 Folate-biopterin transporter GO:0006810|GO:0016021 NIDE_RS00280 14e207df931d0debcc564ca99be0f740 541 SUPERFAMILY SSF103473 30 251 1.7E-6 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS00280 14e207df931d0debcc564ca99be0f740 541 SUPERFAMILY SSF103473 319 527 1.7E-6 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS04820 0fed5d7459ad1ed9bd483f057af6d134 368 SUPERFAMILY SSF51735 3 156 1.01E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04820 0fed5d7459ad1ed9bd483f057af6d134 368 PANTHER PTHR22604 1 365 9.9E-74 T 23-04-2016 NIDE_RS04820 0fed5d7459ad1ed9bd483f057af6d134 368 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 136 201 1.5E-6 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 NIDE_RS04820 0fed5d7459ad1ed9bd483f057af6d134 368 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 122 5.0E-26 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 NIDE_RS04820 0fed5d7459ad1ed9bd483f057af6d134 368 Gene3D G3DSA:3.40.50.720 1 144 3.8E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS04820 0fed5d7459ad1ed9bd483f057af6d134 368 Gene3D G3DSA:3.30.360.10 304 356 1.2E-27 T 23-04-2016 NIDE_RS04820 0fed5d7459ad1ed9bd483f057af6d134 368 Gene3D G3DSA:3.30.360.10 145 270 1.2E-27 T 23-04-2016 NIDE_RS04820 0fed5d7459ad1ed9bd483f057af6d134 368 SUPERFAMILY SSF55347 132 296 2.29E-25 T 23-04-2016 NIDE_RS00965 61211deaf864eebcc84b7f00d2a3b697 423 PANTHER PTHR10108:SF795 67 327 2.4E-109 T 23-04-2016 NIDE_RS00965 61211deaf864eebcc84b7f00d2a3b697 423 PANTHER PTHR10108:SF795 348 415 2.4E-109 T 23-04-2016 NIDE_RS00965 61211deaf864eebcc84b7f00d2a3b697 423 Pfam PF02353 Mycolic acid cyclopropane synthetase 136 407 5.4E-84 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00965 61211deaf864eebcc84b7f00d2a3b697 423 PANTHER PTHR10108 67 327 2.4E-109 T 23-04-2016 NIDE_RS00965 61211deaf864eebcc84b7f00d2a3b697 423 PANTHER PTHR10108 348 415 2.4E-109 T 23-04-2016 NIDE_RS00965 61211deaf864eebcc84b7f00d2a3b697 423 SUPERFAMILY SSF53335 22 367 4.18E-81 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00965 61211deaf864eebcc84b7f00d2a3b697 423 Gene3D G3DSA:3.40.50.150 132 412 8.2E-95 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00965 61211deaf864eebcc84b7f00d2a3b697 423 PIRSF PIRSF003085 26 421 1.0E-113 T 23-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 NIDE_RS03790 37b685bc7f34a8b993630a27d7a4cc97 80 SUPERFAMILY SSF54862 6 75 5.86E-8 T 23-04-2016 NIDE_RS03790 37b685bc7f34a8b993630a27d7a4cc97 80 Gene3D G3DSA:3.30.70.20 6 75 6.5E-8 T 23-04-2016 NIDE_RS08080 3cf85dfca1e7cb7bd642b6e0ada72eaf 587 SUPERFAMILY SSF55469 118 245 4.87E-7 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS08080 3cf85dfca1e7cb7bd642b6e0ada72eaf 587 PANTHER PTHR23026:SF102 397 581 1.3E-92 T 23-04-2016 NIDE_RS08080 3cf85dfca1e7cb7bd642b6e0ada72eaf 587 PANTHER PTHR23026:SF102 118 139 1.3E-92 T 23-04-2016 NIDE_RS08080 3cf85dfca1e7cb7bd642b6e0ada72eaf 587 PANTHER PTHR23026 397 581 1.3E-92 T 23-04-2016 NIDE_RS08080 3cf85dfca1e7cb7bd642b6e0ada72eaf 587 PANTHER PTHR23026 118 139 1.3E-92 T 23-04-2016 NIDE_RS08080 3cf85dfca1e7cb7bd642b6e0ada72eaf 587 SUPERFAMILY SSF55469 481 587 3.3E-9 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS08080 3cf85dfca1e7cb7bd642b6e0ada72eaf 587 Gene3D G3DSA:3.40.109.10 361 389 1.0E-7 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS08080 3cf85dfca1e7cb7bd642b6e0ada72eaf 587 Gene3D G3DSA:3.40.109.10 451 577 1.0E-7 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS08080 3cf85dfca1e7cb7bd642b6e0ada72eaf 587 Gene3D G3DSA:3.40.109.10 95 245 3.7E-5 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 PRINTS PR00320 G protein beta WD-40 repeat signature 65 79 3.6E-8 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 PRINTS PR00320 G protein beta WD-40 repeat signature 307 321 3.6E-8 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 PRINTS PR00320 G protein beta WD-40 repeat signature 107 121 3.6E-8 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 SMART SM00320 81 120 2.3E-12 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 SMART SM00320 281 320 2.6E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 SMART SM00320 123 163 0.74 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 SMART SM00320 39 78 4.0E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 SMART SM00320 232 278 0.88 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 SMART SM00320 166 209 0.018 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 SMART SM00320 323 362 4.6E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 PANTHER PTHR22847 250 362 4.3E-77 T 23-04-2016 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 PANTHER PTHR22847 42 222 4.3E-77 T 23-04-2016 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 Gene3D G3DSA:2.130.10.10 41 198 8.2E-54 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 Gene3D G3DSA:2.130.10.10 199 362 4.8E-45 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 349 363 - T 23-04-2016 IPR019775 WD40 repeat, conserved site NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 65 79 - T 23-04-2016 IPR019775 WD40 repeat, conserved site NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 307 321 - T 23-04-2016 IPR019775 WD40 repeat, conserved site NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 SUPERFAMILY SSF50978 38 362 1.65E-79 T 23-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 Pfam PF00400 WD domain, G-beta repeat 253 277 0.066 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 Pfam PF00400 WD domain, G-beta repeat 325 361 2.2E-6 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 Pfam PF00400 WD domain, G-beta repeat 135 162 0.0036 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 Pfam PF00400 WD domain, G-beta repeat 41 78 5.2E-10 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 Pfam PF00400 WD domain, G-beta repeat 283 320 4.8E-9 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 Pfam PF00400 WD domain, G-beta repeat 180 208 9.7E-4 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS14995 f76d360629637791daaa2bd4801e63e9 369 Pfam PF00400 WD domain, G-beta repeat 82 120 2.4E-10 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 NIDE_RS20295 ec06c8abfbbe7c242fc69d97c2c2889a 279 Gene3D G3DSA:3.60.20.10 236 277 1.5E-67 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS20295 ec06c8abfbbe7c242fc69d97c2c2889a 279 Gene3D G3DSA:3.60.20.10 1 202 1.5E-67 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS20295 ec06c8abfbbe7c242fc69d97c2c2889a 279 Pfam PF00227 Proteasome subunit 24 185 4.4E-7 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 NIDE_RS20295 ec06c8abfbbe7c242fc69d97c2c2889a 279 SUPERFAMILY SSF56235 16 187 1.04E-10 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal NIDE_RS20600 6f395c2254498c672be87f72c94a191b 508 Pfam PF13699 Domain of unknown function (DUF4157) 298 374 3.0E-29 T 23-04-2016 IPR025295 Domain of unknown function DUF4157 NIDE_RS12275 b2ed35b90032ffd3306992feec5a6994 63 PANTHER PTHR13528 4 56 6.0E-16 T 23-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 NIDE_RS12275 b2ed35b90032ffd3306992feec5a6994 63 Gene3D G3DSA:4.10.1160.10 19 63 1.1E-23 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12275 b2ed35b90032ffd3306992feec5a6994 63 Pfam PF00830 Ribosomal L28 family 5 57 2.5E-25 T 23-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 NIDE_RS12275 b2ed35b90032ffd3306992feec5a6994 63 TIGRFAM TIGR00009 L28: ribosomal protein bL28 4 56 2.3E-23 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12275 b2ed35b90032ffd3306992feec5a6994 63 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 62 17.681 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS12275 b2ed35b90032ffd3306992feec5a6994 63 SUPERFAMILY SSF143800 4 62 1.77E-25 T 23-04-2016 NIDE_RS18605 2587b4d43408b0a4f5172e54870da2c5 599 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 58 245 1.2E-20 T 23-04-2016 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 NIDE_RS18605 2587b4d43408b0a4f5172e54870da2c5 599 PANTHER PTHR33908 26 310 3.4E-81 T 23-04-2016 NIDE_RS18605 2587b4d43408b0a4f5172e54870da2c5 599 PANTHER PTHR33908 331 404 3.4E-81 T 23-04-2016 NIDE_RS18605 2587b4d43408b0a4f5172e54870da2c5 599 PANTHER PTHR33908:SF3 26 310 3.4E-81 T 23-04-2016 NIDE_RS18605 2587b4d43408b0a4f5172e54870da2c5 599 PANTHER PTHR33908:SF3 331 404 3.4E-81 T 23-04-2016 NIDE_RS05610 f3ae58aa819570c60ae9d0dcb5e75154 316 Gene3D G3DSA:3.40.50.1400 8 161 9.9E-34 T 23-04-2016 NIDE_RS05610 f3ae58aa819570c60ae9d0dcb5e75154 316 Gene3D G3DSA:3.40.50.1400 162 290 8.2E-44 T 23-04-2016 NIDE_RS05610 f3ae58aa819570c60ae9d0dcb5e75154 316 Pfam PF00762 Ferrochelatase 10 310 8.6E-85 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 NIDE_RS05610 f3ae58aa819570c60ae9d0dcb5e75154 316 TIGRFAM TIGR00109 hemH: ferrochelatase 8 310 2.7E-72 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 NIDE_RS05610 f3ae58aa819570c60ae9d0dcb5e75154 316 Hamap MF_00323 Ferrochelatase [hemH]. 8 311 30.903 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 NIDE_RS05610 f3ae58aa819570c60ae9d0dcb5e75154 316 SUPERFAMILY SSF53800 9 310 4.41E-82 T 23-04-2016 NIDE_RS05610 f3ae58aa819570c60ae9d0dcb5e75154 316 PANTHER PTHR11108 9 310 4.6E-94 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 NIDE_RS10330 67ea7776374bcd1dd7a87d4de3a29003 329 PANTHER PTHR22604 1 329 3.5E-51 T 23-04-2016 NIDE_RS10330 67ea7776374bcd1dd7a87d4de3a29003 329 SUPERFAMILY SSF55347 170 298 3.14E-13 T 23-04-2016 NIDE_RS10330 67ea7776374bcd1dd7a87d4de3a29003 329 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 10 125 1.7E-20 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 NIDE_RS10330 67ea7776374bcd1dd7a87d4de3a29003 329 Gene3D G3DSA:3.40.50.720 5 181 3.2E-31 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS10330 67ea7776374bcd1dd7a87d4de3a29003 329 Gene3D G3DSA:3.30.360.10 182 323 3.0E-26 T 23-04-2016 NIDE_RS10330 67ea7776374bcd1dd7a87d4de3a29003 329 SUPERFAMILY SSF51735 7 151 1.85E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03565 58d4b4df28f5b1b09c23da8fd56fa4bd 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 163 191 - T 23-04-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 NIDE_RS03565 58d4b4df28f5b1b09c23da8fd56fa4bd 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 9.7E-20 T 23-04-2016 IPR003004 GspF/PilC family NIDE_RS03565 58d4b4df28f5b1b09c23da8fd56fa4bd 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 163 191 9.7E-20 T 23-04-2016 IPR003004 GspF/PilC family NIDE_RS03565 58d4b4df28f5b1b09c23da8fd56fa4bd 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 9.7E-20 T 23-04-2016 IPR003004 GspF/PilC family NIDE_RS03565 58d4b4df28f5b1b09c23da8fd56fa4bd 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 64 76 9.7E-20 T 23-04-2016 IPR003004 GspF/PilC family NIDE_RS03565 58d4b4df28f5b1b09c23da8fd56fa4bd 405 PANTHER PTHR30012:SF0 2 405 2.4E-157 T 23-04-2016 NIDE_RS03565 58d4b4df28f5b1b09c23da8fd56fa4bd 405 Pfam PF00482 Type II secretion system (T2SS), protein F 274 396 3.8E-32 T 23-04-2016 IPR018076 Type II secretion system F domain NIDE_RS03565 58d4b4df28f5b1b09c23da8fd56fa4bd 405 Pfam PF00482 Type II secretion system (T2SS), protein F 68 191 1.2E-32 T 23-04-2016 IPR018076 Type II secretion system F domain NIDE_RS03565 58d4b4df28f5b1b09c23da8fd56fa4bd 405 PANTHER PTHR30012 2 405 2.4E-157 T 23-04-2016 NIDE_RS16915 95a1495679c75953bf928209412336f0 377 Pfam PF01384 Phosphate transporter family 18 365 1.8E-58 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 NIDE_RS16915 95a1495679c75953bf928209412336f0 377 PANTHER PTHR11101 3 373 1.6E-39 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 NIDE_RS17045 e2ade4f24d821451d787a4a57f2108f5 459 Pfam PF00675 Insulinase (Peptidase family M16) 58 201 1.3E-19 T 23-04-2016 IPR011765 Peptidase M16, N-terminal NIDE_RS17045 e2ade4f24d821451d787a4a57f2108f5 459 PANTHER PTHR11851:SF140 46 450 9.0E-106 T 23-04-2016 NIDE_RS17045 e2ade4f24d821451d787a4a57f2108f5 459 SUPERFAMILY SSF63411 46 247 4.71E-53 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS17045 e2ade4f24d821451d787a4a57f2108f5 459 Gene3D G3DSA:3.30.830.10 272 452 4.0E-36 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS17045 e2ade4f24d821451d787a4a57f2108f5 459 Gene3D G3DSA:3.30.830.10 49 253 1.8E-47 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 NIDE_RS17045 e2ade4f24d821451d787a4a57f2108f5 459 SUPERFAMILY SSF63411 272 455 1.42E-47 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 NIDE_RS17045 e2ade4f24d821451d787a4a57f2108f5 459 PANTHER PTHR11851 46 450 9.0E-106 T 23-04-2016 NIDE_RS17045 e2ade4f24d821451d787a4a57f2108f5 459 Pfam PF05193 Peptidase M16 inactive domain 207 383 3.9E-30 T 23-04-2016 IPR007863 Peptidase M16, C-terminal NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 Pfam PF00529 HlyD membrane-fusion protein of T1SS 135 355 1.1E-6 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 SUPERFAMILY SSF111369 130 188 2.22E-5 T 23-04-2016 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 PANTHER PTHR32347:SF12 2 360 7.0E-60 T 23-04-2016 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 39 314 3.6E-20 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 SUPERFAMILY SSF111369 182 355 1.7E-12 T 23-04-2016 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 PANTHER PTHR32347 2 360 7.0E-60 T 23-04-2016 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 Gene3D G3DSA:2.40.50.100 48 81 1.3E-16 T 23-04-2016 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 Gene3D G3DSA:2.40.50.100 233 266 1.3E-16 T 23-04-2016 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 SUPERFAMILY SSF111369 47 108 1.31E-5 T 23-04-2016 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 59 79 6.3E-12 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 345 360 6.3E-12 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 247 268 6.3E-12 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS00150 5d0a40ca3d2eb2210c6ccdeb674a95cf 367 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 279 303 6.3E-12 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 NIDE_RS00550 ce26cd48d4ba018b2fe97a476622da50 262 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 10 153 2.2E-8 T 23-04-2016 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal NIDE_RS00550 ce26cd48d4ba018b2fe97a476622da50 262 Pfam PF09356 Phage conserved hypothetical protein BR0599 186 254 1.6E-14 T 23-04-2016 IPR018964 Bacteriophage phiJL001, Gp84, C-terminal NIDE_RS20000 6eb3576bf124178229d14116f60ea8d1 564 PANTHER PTHR22773 1 358 2.0E-85 T 23-04-2016 NIDE_RS20000 6eb3576bf124178229d14116f60ea8d1 564 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 319 331 2.7E-25 T 23-04-2016 NIDE_RS20000 6eb3576bf124178229d14116f60ea8d1 564 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 230 251 2.7E-25 T 23-04-2016 NIDE_RS20000 6eb3576bf124178229d14116f60ea8d1 564 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 79 104 2.7E-25 T 23-04-2016 NIDE_RS20000 6eb3576bf124178229d14116f60ea8d1 564 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 252 278 2.7E-25 T 23-04-2016 NIDE_RS20000 6eb3576bf124178229d14116f60ea8d1 564 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 107 127 2.7E-25 T 23-04-2016 NIDE_RS20000 6eb3576bf124178229d14116f60ea8d1 564 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 66 117 1.2E-15 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal NIDE_RS20000 6eb3576bf124178229d14116f60ea8d1 564 Pfam PF00361 Proton-conducting membrane transporter 130 393 4.6E-49 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS20000 6eb3576bf124178229d14116f60ea8d1 564 PANTHER PTHR22773:SF50 1 358 2.0E-85 T 23-04-2016 NIDE_RS15375 b32bfc9b98a060fd2e108c1778512410 150 PANTHER PTHR30558:SF3 6 138 5.3E-37 T 23-04-2016 NIDE_RS15375 b32bfc9b98a060fd2e108c1778512410 150 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 131 3.3E-33 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 NIDE_RS15375 b32bfc9b98a060fd2e108c1778512410 150 PANTHER PTHR30558 6 138 5.3E-37 T 23-04-2016 NIDE_RS20360 8eea2495f9995b091507f6d6f4a48cb8 107 Gene3D G3DSA:3.40.1370.10 1 106 5.7E-26 T 23-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 NIDE_RS20360 8eea2495f9995b091507f6d6f4a48cb8 107 SUPERFAMILY SSF52166 1 106 1.05E-24 T 23-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 NIDE_RS20360 8eea2495f9995b091507f6d6f4a48cb8 107 Pfam PF00573 Ribosomal protein L4/L1 family 1 104 3.8E-24 T 23-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 NIDE_RS20360 8eea2495f9995b091507f6d6f4a48cb8 107 PANTHER PTHR10746 1 105 1.2E-22 T 23-04-2016 IPR013005 50S ribosomal protein uL4 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 PANTHER PTHR19959 39 222 5.0E-50 T 23-04-2016 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 SMART SM00028 25 58 18.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 SMART SM00028 66 99 0.018 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 SMART SM00028 108 141 0.012 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 SMART SM00028 150 183 0.4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 Pfam PF13424 Tetratricopeptide repeat 30 97 1.4E-11 T 23-04-2016 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 Pfam PF13424 Tetratricopeptide repeat 106 182 4.9E-19 T 23-04-2016 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 PRINTS PR00381 Kinesin light chain signature 104 121 2.6E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 PRINTS PR00381 Kinesin light chain signature 183 204 2.6E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 PRINTS PR00381 Kinesin light chain signature 148 168 2.6E-10 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 SUPERFAMILY SSF48452 103 221 2.05E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 Gene3D G3DSA:1.25.40.10 28 221 4.2E-28 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19795 60b4f09c05095bd4b62de9a642231eab 227 SUPERFAMILY SSF48452 22 139 1.52E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS06730 f962556bf7c7fe6276dc99dc9da22117 151 Gene3D G3DSA:3.10.450.50 77 116 3.2E-7 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS06730 f962556bf7c7fe6276dc99dc9da22117 151 Gene3D G3DSA:3.10.450.50 13 22 3.2E-7 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS06730 f962556bf7c7fe6276dc99dc9da22117 151 PANTHER PTHR36573 12 151 1.8E-12 T 23-04-2016 NIDE_RS06730 f962556bf7c7fe6276dc99dc9da22117 151 Pfam PF05494 MlaC protein 12 122 1.8E-21 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC NIDE_RS06730 f962556bf7c7fe6276dc99dc9da22117 151 Gene3D G3DSA:1.10.10.640 23 76 1.1E-4 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical NIDE_RS20835 b4ce940d5ba08ba0cd4b989c00f0e0f3 239 Pfam PF05818 Enterobacterial TraT complement resistance protein 30 185 5.6E-26 T 23-04-2016 IPR008874 Enterobacterial TraT complement resistance GO:0019867|GO:0046999 NIDE_RS18115 ea21cebd66c545ef401a5f2546042344 476 SUPERFAMILY SSF53720 6 472 2.23E-144 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 NIDE_RS18115 ea21cebd66c545ef401a5f2546042344 476 PANTHER PTHR11699 6 475 1.6E-223 T 23-04-2016 NIDE_RS18115 ea21cebd66c545ef401a5f2546042344 476 Gene3D G3DSA:3.40.605.10 6 261 2.5E-82 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS18115 ea21cebd66c545ef401a5f2546042344 476 PANTHER PTHR11699:SF108 6 475 1.6E-223 T 23-04-2016 NIDE_RS18115 ea21cebd66c545ef401a5f2546042344 476 Gene3D G3DSA:3.40.309.10 262 444 5.1E-60 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 NIDE_RS18115 ea21cebd66c545ef401a5f2546042344 476 Pfam PF00171 Aldehyde dehydrogenase family 13 467 4.2E-150 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 NIDE_RS18115 ea21cebd66c545ef401a5f2546042344 476 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 NIDE_RS20935 023c00279bc8a48c82add5ed7c79ba6e 143 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 88 121 8.4E-10 T 23-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 NIDE_RS20935 023c00279bc8a48c82add5ed7c79ba6e 143 SUPERFAMILY SSF57716 89 123 6.42E-8 T 23-04-2016 NIDE_RS20935 023c00279bc8a48c82add5ed7c79ba6e 143 PANTHER PTHR33823 20 126 3.3E-15 T 23-04-2016 NIDE_RS13385 09e9135d582ab94318765c620293ce77 216 Hamap MF_00165 Thymidylate kinase [tmk]. 12 213 30.921 T 23-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 NIDE_RS13385 09e9135d582ab94318765c620293ce77 216 Pfam PF02223 Thymidylate kinase 16 203 7.2E-51 T 23-04-2016 NIDE_RS13385 09e9135d582ab94318765c620293ce77 216 PANTHER PTHR10344 1 215 3.9E-65 T 23-04-2016 NIDE_RS13385 09e9135d582ab94318765c620293ce77 216 SUPERFAMILY SSF52540 9 215 1.32E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13385 09e9135d582ab94318765c620293ce77 216 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 10 204 5.4E-56 T 23-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 NIDE_RS13385 09e9135d582ab94318765c620293ce77 216 ProSitePatterns PS01331 Thymidylate kinase signature. 101 113 - T 23-04-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 NIDE_RS13385 09e9135d582ab94318765c620293ce77 216 Gene3D G3DSA:3.40.50.300 10 213 1.8E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS14175 53bef4cb03709be654c29ec25b9fae3e 127 PRINTS PR00502 NUDIX hydrolase family signature 21 35 3.1E-6 T 23-04-2016 IPR020476 NUDIX hydrolase NIDE_RS14175 53bef4cb03709be654c29ec25b9fae3e 127 PRINTS PR00502 NUDIX hydrolase family signature 35 50 3.1E-6 T 23-04-2016 IPR020476 NUDIX hydrolase NIDE_RS14175 53bef4cb03709be654c29ec25b9fae3e 127 SUPERFAMILY SSF55811 2 122 5.28E-29 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 NIDE_RS14175 53bef4cb03709be654c29ec25b9fae3e 127 ProSitePatterns PS00893 Nudix box signature. 26 47 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 NIDE_RS14175 53bef4cb03709be654c29ec25b9fae3e 127 PANTHER PTHR21340 4 119 4.5E-19 T 23-04-2016 NIDE_RS14175 53bef4cb03709be654c29ec25b9fae3e 127 Gene3D G3DSA:3.90.79.10 3 121 2.4E-27 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 NIDE_RS14175 53bef4cb03709be654c29ec25b9fae3e 127 Pfam PF00293 NUDIX domain 4 104 5.5E-19 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 NIDE_RS20285 b6b113fdaa6638119d2911f899757995 273 SUPERFAMILY SSF103088 83 208 1.31E-26 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20285 b6b113fdaa6638119d2911f899757995 273 Gene3D G3DSA:3.30.1330.60 97 210 2.0E-26 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20285 b6b113fdaa6638119d2911f899757995 273 Pfam PF00691 OmpA family 110 204 2.3E-16 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20285 b6b113fdaa6638119d2911f899757995 273 PANTHER PTHR30128 79 211 1.0E-23 T 23-04-2016 NIDE_RS20285 b6b113fdaa6638119d2911f899757995 273 PRINTS PR01021 OMPA domain signature 155 171 5.9E-10 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS20285 b6b113fdaa6638119d2911f899757995 273 PRINTS PR01021 OMPA domain signature 140 155 5.9E-10 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS20285 b6b113fdaa6638119d2911f899757995 273 PRINTS PR01021 OMPA domain signature 110 132 5.9E-10 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 Pfam PF02272 DHHA1 domain 799 866 4.4E-14 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 224 237 5.4E-32 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 197 208 5.4E-32 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 274 290 5.4E-32 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 5.4E-32 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 298 311 5.4E-32 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 654 697 4.4E-18 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 PANTHER PTHR11777:SF9 1 875 0.0 T 23-04-2016 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 SUPERFAMILY SSF50447 454 552 9.89E-16 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 PANTHER PTHR11777 1 875 0.0 T 23-04-2016 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 Gene3D G3DSA:3.30.930.10 4 238 1.4E-112 T 23-04-2016 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 SMART SM00863 654 697 7.0E-21 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 874 179.416 T 23-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 SUPERFAMILY SSF55681 4 243 5.47E-103 T 23-04-2016 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 SUPERFAMILY SSF101353 244 460 6.15E-63 T 23-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 Pfam PF01411 tRNA synthetases class II (A) 8 555 4.1E-209 T 23-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 8 853 7.4E-291 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 NIDE_RS07835 c0155a3826448bd980456bc790fcebeb 876 SUPERFAMILY SSF55186 553 708 2.35E-47 T 23-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 NIDE_RS05445 22e98fb379f3a6393db37d9ccb75f6aa 331 Gene3D G3DSA:3.40.50.1820 64 198 6.3E-5 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS05445 22e98fb379f3a6393db37d9ccb75f6aa 331 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 51 274 1.2E-22 T 23-04-2016 IPR010297 Protein of unknown function DUF900, hydrolase-like NIDE_RS19130 12f8e64800e73f22f6cd5678674261a6 227 PANTHER PTHR31801 1 221 1.2E-75 T 23-04-2016 NIDE_RS19130 12f8e64800e73f22f6cd5678674261a6 227 SUPERFAMILY SSF51219 1 226 3.66E-70 T 23-04-2016 IPR016031 Tryptophan RNA-binding attenuator protein-like domain NIDE_RS19130 12f8e64800e73f22f6cd5678674261a6 227 Gene3D G3DSA:3.60.160.10 1 226 1.6E-79 T 23-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 NIDE_RS19130 12f8e64800e73f22f6cd5678674261a6 227 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 1 224 1.2E-52 T 23-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 NIDE_RS19130 12f8e64800e73f22f6cd5678674261a6 227 Pfam PF01987 Mitochondrial biogenesis AIM24 6 210 4.8E-64 T 23-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 NIDE_RS19130 12f8e64800e73f22f6cd5678674261a6 227 PANTHER PTHR31801:SF0 1 221 1.2E-75 T 23-04-2016 NIDE_RS16980 ba1af4d77ffd3de19350eb30015d5df4 109 SUPERFAMILY SSF54913 7 108 2.08E-35 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta NIDE_RS16980 ba1af4d77ffd3de19350eb30015d5df4 109 Gene3D G3DSA:3.30.70.830 8 109 4.1E-38 T 23-04-2016 NIDE_RS16980 ba1af4d77ffd3de19350eb30015d5df4 109 PANTHER PTHR23419 6 109 1.2E-39 T 23-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 NIDE_RS16980 ba1af4d77ffd3de19350eb30015d5df4 109 Pfam PF03091 CutA1 divalent ion tolerance protein 8 105 3.7E-34 T 23-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 NIDE_RS19705 ee6703bd41c5b48838acbef106468b56 224 PANTHER PTHR30400:SF0 11 224 1.9E-73 T 23-04-2016 NIDE_RS19705 ee6703bd41c5b48838acbef106468b56 224 Pfam PF00912 Transglycosylase 67 221 7.2E-57 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 NIDE_RS19705 ee6703bd41c5b48838acbef106468b56 224 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 25 223 1.2E-69 T 23-04-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 NIDE_RS19705 ee6703bd41c5b48838acbef106468b56 224 PANTHER PTHR30400 11 224 1.9E-73 T 23-04-2016 NIDE_RS19705 ee6703bd41c5b48838acbef106468b56 224 Gene3D G3DSA:1.10.3810.10 71 222 5.7E-64 T 23-04-2016 NIDE_RS19705 ee6703bd41c5b48838acbef106468b56 224 SUPERFAMILY SSF53955 66 222 1.97E-60 T 23-04-2016 IPR023346 Lysozyme-like domain NIDE_RS08025 08281b257d07455944be72f733cb333e 359 Gene3D G3DSA:3.40.50.2000 260 321 2.3E-5 T 23-04-2016 NIDE_RS08025 08281b257d07455944be72f733cb333e 359 PANTHER PTHR38134 1 337 6.6E-21 T 23-04-2016 NIDE_RS08025 08281b257d07455944be72f733cb333e 359 SUPERFAMILY SSF53756 75 323 2.86E-11 T 23-04-2016 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 SUPERFAMILY SSF56655 1 244 1.57E-64 T 23-04-2016 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 Pfam PF00459 Inositol monophosphatase family 26 234 2.3E-45 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 204 218 - T 23-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 Gene3D G3DSA:3.40.190.80 170 248 2.1E-19 T 23-04-2016 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 23-04-2016 IPR020583 Inositol monophosphatase, metal-binding site NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 201 225 5.9E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 169 190 5.9E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 80 96 5.9E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 36 56 5.9E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 58 74 5.9E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 PANTHER PTHR20854 1 232 1.3E-55 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 NIDE_RS19845 61cd86a07265a1673359a4dcd5249f92 270 Gene3D G3DSA:3.30.540.10 2 137 2.0E-41 T 23-04-2016 NIDE_RS06835 1859f03a27305bfdb759c802d28f4d6a 241 Pfam PF04116 Fatty acid hydroxylase superfamily 80 213 1.2E-26 T 23-04-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 NIDE_RS06835 1859f03a27305bfdb759c802d28f4d6a 241 PANTHER PTHR21624:SF2 16 232 3.2E-22 T 23-04-2016 NIDE_RS06835 1859f03a27305bfdb759c802d28f4d6a 241 PANTHER PTHR21624 16 232 3.2E-22 T 23-04-2016 NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 194 210 3.5E-9 T 23-04-2016 NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 306 318 3.5E-9 T 23-04-2016 NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 225 239 3.5E-9 T 23-04-2016 NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 Pfam PF12161 HsdM N-terminal domain 9 145 1.1E-21 T 23-04-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 SUPERFAMILY SSF53335 78 507 6.47E-111 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 SUPERFAMILY SSF53335 9 47 6.47E-111 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 SUPERFAMILY SSF53335 667 708 6.47E-111 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 PANTHER PTHR30195 1 709 1.1E-207 T 23-04-2016 NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 Pfam PF02384 N-6 DNA Methylase 171 486 2.8E-52 T 23-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 309 315 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 PANTHER PTHR30195:SF10 1 709 1.1E-207 T 23-04-2016 NIDE_RS08695 e6ef630a7ff72388b71313fb63dfab9b 714 Gene3D G3DSA:3.40.50.150 197 460 6.6E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS03485 c55e7d097181381df5e6119cc955565b 369 Pfam PF01098 Cell cycle protein 22 369 1.6E-111 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 NIDE_RS03485 c55e7d097181381df5e6119cc955565b 369 PANTHER PTHR30474 1 369 1.4E-146 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 NIDE_RS03485 c55e7d097181381df5e6119cc955565b 369 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 331 355 - T 23-04-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 NIDE_RS03485 c55e7d097181381df5e6119cc955565b 369 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 19 369 2.9E-126 T 23-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 NIDE_RS03485 c55e7d097181381df5e6119cc955565b 369 PANTHER PTHR30474:SF2 1 369 1.4E-146 T 23-04-2016 NIDE_RS12890 1692697958d764419e68b79d26253298 184 Gene3D G3DSA:3.40.430.10 4 181 1.4E-25 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain NIDE_RS12890 1692697958d764419e68b79d26253298 184 Pfam PF01872 RibD C-terminal domain 75 174 1.6E-9 T 23-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 NIDE_RS12890 1692697958d764419e68b79d26253298 184 PANTHER PTHR38011 39 184 5.7E-19 T 23-04-2016 NIDE_RS12890 1692697958d764419e68b79d26253298 184 SUPERFAMILY SSF53597 4 181 1.7E-31 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain NIDE_RS11135 d7fdedf2c66e8b789fc8b764e38db177 169 Pfam PF06146 Phosphate-starvation-inducible E 75 142 2.9E-13 T 23-04-2016 IPR020948 Phosphate-starvation-induced PsiE-like NIDE_RS19435 982a3175303e89e6537d84358321384f 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 239 263 1.8E-8 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS19435 982a3175303e89e6537d84358321384f 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 380 406 1.8E-8 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS19435 982a3175303e89e6537d84358321384f 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 328 347 1.8E-8 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 NIDE_RS19435 982a3175303e89e6537d84358321384f 510 PANTHER PTHR22773:SF56 1 508 3.8E-127 T 23-04-2016 NIDE_RS19435 982a3175303e89e6537d84358321384f 510 PANTHER PTHR22773 1 508 3.8E-127 T 23-04-2016 NIDE_RS19435 982a3175303e89e6537d84358321384f 510 Pfam PF00361 Proton-conducting membrane transporter 124 407 4.8E-57 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 NIDE_RS14715 75d0d7f906ffcb37a22baedc701c73b1 263 Pfam PF00795 Carbon-nitrogen hydrolase 15 242 1.9E-43 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS14715 75d0d7f906ffcb37a22baedc701c73b1 263 SUPERFAMILY SSF56317 1 261 1.83E-67 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS14715 75d0d7f906ffcb37a22baedc701c73b1 263 Gene3D G3DSA:3.60.110.10 1 262 3.7E-68 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS14715 75d0d7f906ffcb37a22baedc701c73b1 263 PANTHER PTHR23088 1 262 2.0E-71 T 23-04-2016 NIDE_RS15055 624d7ee8c590325b945e60729cb7652f 439 Gene3D G3DSA:1.10.760.10 333 428 3.7E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15055 624d7ee8c590325b945e60729cb7652f 439 SUPERFAMILY SSF46626 333 432 6.75E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 Pfam PF00334 Nucleoside diphosphate kinase 3 136 3.1E-52 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 2 137 32.427 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 SMART SM00562 2 139 3.9E-73 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 113 121 - T 23-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 SUPERFAMILY SSF54919 2 138 5.37E-54 T 23-04-2016 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 Gene3D G3DSA:3.30.70.141 2 138 1.2E-54 T 23-04-2016 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 PRINTS PR01243 Nucleoside diphosphate kinase signature 49 68 5.1E-35 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 PRINTS PR01243 Nucleoside diphosphate kinase signature 113 132 5.1E-35 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 PRINTS PR01243 Nucleoside diphosphate kinase signature 69 86 5.1E-35 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 PRINTS PR01243 Nucleoside diphosphate kinase signature 5 27 5.1E-35 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 PRINTS PR01243 Nucleoside diphosphate kinase signature 90 106 5.1E-35 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 NIDE_RS12515 9d97809ca60c35277e2df9b365402778 139 PANTHER PTHR11349 3 138 1.2E-62 T 23-04-2016 NIDE_RS20695 dbe5e377c13ccc7f6ae8c205cb296760 404 PANTHER PTHR30408:SF2 4 204 4.4E-16 T 23-04-2016 NIDE_RS20695 dbe5e377c13ccc7f6ae8c205cb296760 404 Pfam PF01420 Type I restriction modification DNA specificity domain 4 174 7.7E-13 T 23-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 NIDE_RS20695 dbe5e377c13ccc7f6ae8c205cb296760 404 PANTHER PTHR30408 4 204 4.4E-16 T 23-04-2016 NIDE_RS20695 dbe5e377c13ccc7f6ae8c205cb296760 404 SUPERFAMILY SSF116734 3 204 2.13E-32 T 23-04-2016 NIDE_RS20695 dbe5e377c13ccc7f6ae8c205cb296760 404 SUPERFAMILY SSF116734 207 404 1.39E-27 T 23-04-2016 NIDE_RS15630 d4f225232f25ca46dd36e6dcb800b7f5 372 SUPERFAMILY SSF53383 12 369 1.6E-115 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS15630 d4f225232f25ca46dd36e6dcb800b7f5 372 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 16 365 5.1E-126 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS15630 d4f225232f25ca46dd36e6dcb800b7f5 372 Gene3D G3DSA:3.90.1150.10 246 371 5.3E-44 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS15630 d4f225232f25ca46dd36e6dcb800b7f5 372 PANTHER PTHR30244 1 372 5.1E-152 T 23-04-2016 NIDE_RS15630 d4f225232f25ca46dd36e6dcb800b7f5 372 PANTHER PTHR30244:SF15 1 372 5.1E-152 T 23-04-2016 NIDE_RS15630 d4f225232f25ca46dd36e6dcb800b7f5 372 Gene3D G3DSA:3.40.640.10 13 244 1.7E-85 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS15630 d4f225232f25ca46dd36e6dcb800b7f5 372 PIRSF PIRSF000390 2 371 9.5E-111 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS12305 89e026971aa0978ac8ec24919bfb09c9 209 Pfam PF02698 DUF218 domain 98 146 9.3E-8 T 23-04-2016 IPR003848 Domain of unknown function DUF218 NIDE_RS12305 89e026971aa0978ac8ec24919bfb09c9 209 SUPERFAMILY SSF142764 19 156 7.32E-6 T 23-04-2016 NIDE_RS18010 455731fa28d3ddcdf289011250b15745 472 Gene3D G3DSA:3.40.50.1820 184 293 5.2E-5 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS18010 455731fa28d3ddcdf289011250b15745 472 SUPERFAMILY SSF53474 172 220 4.29E-6 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS18010 455731fa28d3ddcdf289011250b15745 472 SUPERFAMILY SSF53474 285 318 4.29E-6 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS17840 8f3085a7c95bfe243a243a6568fb657f 443 SUPERFAMILY SSF56954 20 438 2.22E-75 T 23-04-2016 NIDE_RS17840 8f3085a7c95bfe243a243a6568fb657f 443 Pfam PF02321 Outer membrane efflux protein 32 232 3.4E-22 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS17840 8f3085a7c95bfe243a243a6568fb657f 443 Pfam PF02321 Outer membrane efflux protein 256 437 9.6E-29 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS17840 8f3085a7c95bfe243a243a6568fb657f 443 PANTHER PTHR30026 27 443 3.4E-47 T 23-04-2016 NIDE_RS17840 8f3085a7c95bfe243a243a6568fb657f 443 Gene3D G3DSA:1.20.1600.10 30 438 4.0E-64 T 23-04-2016 NIDE_RS08035 9cb4d4fa2c59049c997d20ddc6ae64c4 105 SUPERFAMILY SSF48452 4 76 2.92E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08035 9cb4d4fa2c59049c997d20ddc6ae64c4 105 Gene3D G3DSA:1.25.40.10 3 80 1.4E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS08035 9cb4d4fa2c59049c997d20ddc6ae64c4 105 Pfam PF14559 Tetratricopeptide repeat 32 80 7.9E-6 T 23-04-2016 NIDE_RS01215 4159325278526a35f1722094ad1783c1 361 SMART SM00567 E-Z type HEAT repeats 299 327 16.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS01215 4159325278526a35f1722094ad1783c1 361 SMART SM00567 E-Z type HEAT repeats 231 259 76.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS01215 4159325278526a35f1722094ad1783c1 361 SMART SM00567 E-Z type HEAT repeats 262 295 1.2 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS01215 4159325278526a35f1722094ad1783c1 361 Gene3D G3DSA:1.25.10.10 188 324 1.1E-19 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS01215 4159325278526a35f1722094ad1783c1 361 Pfam PF13646 HEAT repeats 230 310 4.6E-9 T 23-04-2016 NIDE_RS01215 4159325278526a35f1722094ad1783c1 361 SUPERFAMILY SSF48371 180 324 1.3E-16 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS01635 ee9078ee074e2ab760d81eb7df6d1152 567 Gene3D G3DSA:3.40.50.10490 333 397 6.0E-8 T 23-04-2016 NIDE_RS01635 ee9078ee074e2ab760d81eb7df6d1152 567 Pfam PF00342 Phosphoglucose isomerase 55 290 1.8E-17 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 NIDE_RS01635 ee9078ee074e2ab760d81eb7df6d1152 567 Gene3D G3DSA:3.40.50.10490 73 193 7.6E-24 T 23-04-2016 NIDE_RS01635 ee9078ee074e2ab760d81eb7df6d1152 567 PANTHER PTHR11469 56 301 1.8E-38 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 NIDE_RS01635 ee9078ee074e2ab760d81eb7df6d1152 567 PRINTS PR00662 Glucose-6-phosphate isomerase signature 268 289 3.5E-10 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 NIDE_RS01635 ee9078ee074e2ab760d81eb7df6d1152 567 PRINTS PR00662 Glucose-6-phosphate isomerase signature 82 101 3.5E-10 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 NIDE_RS01635 ee9078ee074e2ab760d81eb7df6d1152 567 PRINTS PR00662 Glucose-6-phosphate isomerase signature 193 211 3.5E-10 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 NIDE_RS01635 ee9078ee074e2ab760d81eb7df6d1152 567 SUPERFAMILY SSF53697 19 407 8.9E-79 T 23-04-2016 NIDE_RS01635 ee9078ee074e2ab760d81eb7df6d1152 567 Gene3D G3DSA:3.40.50.10490 454 543 7.7E-10 T 23-04-2016 NIDE_RS01635 ee9078ee074e2ab760d81eb7df6d1152 567 Gene3D G3DSA:3.40.50.10490 194 298 3.1E-28 T 23-04-2016 NIDE_RS08150 dfe9bc04df05118f4859fe769be425e2 115 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 8 109 6.9E-8 T 23-04-2016 IPR018745 Domain of unknown function DUF2294 NIDE_RS10740 e937b7a08c01b39ae1f716946771331b 130 SUPERFAMILY SSF101116 5 121 3.27E-32 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 NIDE_RS10740 e937b7a08c01b39ae1f716946771331b 130 PIRSF PIRSF039090 1 128 6.6E-33 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 NIDE_RS10740 e937b7a08c01b39ae1f716946771331b 130 Pfam PF02561 Flagellar protein FliS 7 119 1.7E-35 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 NIDE_RS10740 e937b7a08c01b39ae1f716946771331b 130 Gene3D G3DSA:1.20.120.340 5 123 1.4E-36 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 NIDE_RS10740 e937b7a08c01b39ae1f716946771331b 130 PANTHER PTHR34773 1 123 4.9E-31 T 23-04-2016 NIDE_RS10740 e937b7a08c01b39ae1f716946771331b 130 TIGRFAM TIGR00208 fliS: flagellar protein FliS 2 119 1.6E-25 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 NIDE_RS04120 0405290d63bc5fdcff925bae910832dd 168 Gene3D G3DSA:1.10.760.10 58 146 9.2E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS04120 0405290d63bc5fdcff925bae910832dd 168 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 72 143 7.0E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS04120 0405290d63bc5fdcff925bae910832dd 168 SUPERFAMILY SSF46626 7 147 1.64E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS03785 e8251a2dd868f3650c06668339220f3e 237 PANTHER PTHR32154:SF2 1 221 2.0E-62 T 23-04-2016 NIDE_RS03785 e8251a2dd868f3650c06668339220f3e 237 PANTHER PTHR32154 1 221 2.0E-62 T 23-04-2016 NIDE_RS03785 e8251a2dd868f3650c06668339220f3e 237 TIGRFAM TIGR02175 PorC_KorC: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family 6 176 2.7E-31 T 23-04-2016 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0055114 NIDE_RS03785 e8251a2dd868f3650c06668339220f3e 237 Gene3D G3DSA:3.40.920.10 4 217 5.5E-53 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 NIDE_RS03785 e8251a2dd868f3650c06668339220f3e 237 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 13 212 1.1E-37 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 NIDE_RS03785 e8251a2dd868f3650c06668339220f3e 237 SUPERFAMILY SSF53323 4 219 3.79E-38 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 NIDE_RS02295 68f24004ad33454ac86e1b49dadffb7f 169 SUPERFAMILY SSF141371 58 161 5.1E-11 T 23-04-2016 NIDE_RS02295 68f24004ad33454ac86e1b49dadffb7f 169 Gene3D G3DSA:2.40.10.220 56 155 2.9E-6 T 23-04-2016 NIDE_RS02295 68f24004ad33454ac86e1b49dadffb7f 169 Pfam PF07238 PilZ domain 59 155 1.9E-9 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS05415 a608b6859653ed5f62a68d91ba964266 448 Pfam PF10092 Uncharacterized protein conserved in bacteria (DUF2330) 22 368 3.4E-114 T 23-04-2016 IPR019283 Protein of unknown function DUF2330 NIDE_RS05415 a608b6859653ed5f62a68d91ba964266 448 PIRSF PIRSF026449 1 448 3.6E-171 T 23-04-2016 IPR016838 Uncharacterised conserved protein UCP026449 NIDE_RS10235 a6fd93a62e63b08be1b4681ddf82f905 948 TIGRFAM TIGR02243 TIGR02243: putative baseplate assembly protein 571 901 3.7E-51 T 23-04-2016 IPR011749 Conserved hypothetical protein CHP02243 NIDE_RS05325 571df218508106b671dfc94a36026d4a 258 PANTHER PTHR30292:SF0 3 256 8.5E-99 T 23-04-2016 NIDE_RS05325 571df218508106b671dfc94a36026d4a 258 PANTHER PTHR30292 3 256 8.5E-99 T 23-04-2016 NIDE_RS05325 571df218508106b671dfc94a36026d4a 258 SUPERFAMILY SSF88713 6 253 1.63E-82 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS05325 571df218508106b671dfc94a36026d4a 258 Pfam PF03746 LamB/YcsF family 7 244 4.1E-89 T 23-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF NIDE_RS09250 338e841bdc9c45a05a20865b76e16838 319 Pfam PF02169 LPP20 lipoprotein 101 167 2.6E-7 T 23-04-2016 IPR024952 Lipoprotein LPP20-like NIDE_RS02135 ee4691aba58255a790fc9b5799f226fc 141 SUPERFAMILY SSF141371 35 135 3.53E-9 T 23-04-2016 NIDE_RS02135 ee4691aba58255a790fc9b5799f226fc 141 Pfam PF07238 PilZ domain 37 133 2.5E-7 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS03260 9e6ef28bc699953b2b70dec990ac3d02 83 Gene3D G3DSA:3.30.40.10 7 71 1.2E-6 T 23-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type NIDE_RS03260 9e6ef28bc699953b2b70dec990ac3d02 83 SUPERFAMILY SSF57903 8 67 3.56E-6 T 23-04-2016 IPR011011 Zinc finger, FYVE/PHD-type NIDE_RS09700 7d32290fbdc39232adcfc1b4235c67d8 276 PANTHER PTHR32552 8 264 1.8E-26 T 23-04-2016 NIDE_RS09700 7d32290fbdc39232adcfc1b4235c67d8 276 Pfam PF00665 Integrase core domain 112 222 1.6E-23 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS09700 7d32290fbdc39232adcfc1b4235c67d8 276 Pfam PF13276 HTH-like domain 37 88 2.4E-10 T 23-04-2016 IPR025948 HTH-like domain NIDE_RS09700 7d32290fbdc39232adcfc1b4235c67d8 276 Gene3D G3DSA:3.30.420.10 106 261 2.8E-36 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS09700 7d32290fbdc39232adcfc1b4235c67d8 276 SUPERFAMILY SSF53098 110 270 5.82E-49 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS15190 81d10e02abd935f4c32b08fc46b080e2 506 PANTHER PTHR30203:SF3 1 505 6.4E-106 T 23-04-2016 NIDE_RS15190 81d10e02abd935f4c32b08fc46b080e2 506 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 18 488 1.4E-115 T 23-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 NIDE_RS15190 81d10e02abd935f4c32b08fc46b080e2 506 Pfam PF02321 Outer membrane efflux protein 304 486 1.1E-32 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS15190 81d10e02abd935f4c32b08fc46b080e2 506 Pfam PF02321 Outer membrane efflux protein 73 277 7.5E-24 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS15190 81d10e02abd935f4c32b08fc46b080e2 506 Gene3D G3DSA:1.20.1600.10 59 492 4.1E-114 T 23-04-2016 NIDE_RS15190 81d10e02abd935f4c32b08fc46b080e2 506 SUPERFAMILY SSF56954 7 36 2.88E-112 T 23-04-2016 NIDE_RS15190 81d10e02abd935f4c32b08fc46b080e2 506 SUPERFAMILY SSF56954 64 491 2.88E-112 T 23-04-2016 NIDE_RS15190 81d10e02abd935f4c32b08fc46b080e2 506 PANTHER PTHR30203 1 505 6.4E-106 T 23-04-2016 NIDE_RS17850 fe9594e8538b1d95dfa2c1028cc6ff18 354 SUPERFAMILY SSF111369 52 271 1.57E-35 T 23-04-2016 NIDE_RS17850 fe9594e8538b1d95dfa2c1028cc6ff18 354 PANTHER PTHR30469 35 354 4.3E-80 T 23-04-2016 NIDE_RS17850 fe9594e8538b1d95dfa2c1028cc6ff18 354 PANTHER PTHR30469:SF15 35 354 4.3E-80 T 23-04-2016 NIDE_RS17850 fe9594e8538b1d95dfa2c1028cc6ff18 354 Gene3D G3DSA:2.40.50.100 159 190 1.1E-17 T 23-04-2016 NIDE_RS17850 fe9594e8538b1d95dfa2c1028cc6ff18 354 Gene3D G3DSA:2.40.50.100 65 98 1.1E-17 T 23-04-2016 NIDE_RS17850 fe9594e8538b1d95dfa2c1028cc6ff18 354 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 53 263 6.6E-28 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS17850 fe9594e8538b1d95dfa2c1028cc6ff18 354 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 336 1.0E-63 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS20140 fe1e1013519cf07f95bf1233db2edbc4 172 Pfam PF07238 PilZ domain 60 163 1.2E-13 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS20140 fe1e1013519cf07f95bf1233db2edbc4 172 Gene3D G3DSA:2.40.10.220 88 168 3.2E-4 T 23-04-2016 NIDE_RS20140 fe1e1013519cf07f95bf1233db2edbc4 172 SUPERFAMILY SSF141371 60 164 9.81E-8 T 23-04-2016 NIDE_RS07500 71c1fa11c46cf6d2e0d01d3a15340187 730 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 28 585 2.9E-192 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07500 71c1fa11c46cf6d2e0d01d3a15340187 730 PANTHER PTHR30075 27 728 8.2E-270 T 23-04-2016 NIDE_RS07500 71c1fa11c46cf6d2e0d01d3a15340187 730 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 25 725 24.07 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07500 71c1fa11c46cf6d2e0d01d3a15340187 730 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 26 725 5.5E-197 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07500 71c1fa11c46cf6d2e0d01d3a15340187 730 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 72 84 4.8E-32 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07500 71c1fa11c46cf6d2e0d01d3a15340187 730 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 344 360 4.8E-32 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07500 71c1fa11c46cf6d2e0d01d3a15340187 730 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 272 287 4.8E-32 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07500 71c1fa11c46cf6d2e0d01d3a15340187 730 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 422 441 4.8E-32 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07500 71c1fa11c46cf6d2e0d01d3a15340187 730 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 29 42 4.8E-32 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 NIDE_RS07500 71c1fa11c46cf6d2e0d01d3a15340187 730 SUPERFAMILY SSF109604 375 519 6.91E-14 T 23-04-2016 NIDE_RS13165 36d0ea606c36ab00897718440ca8ca8c 356 SUPERFAMILY SSF51735 2 347 8.24E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13165 36d0ea606c36ab00897718440ca8ca8c 356 Gene3D G3DSA:3.40.50.720 2 230 3.1E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS13165 36d0ea606c36ab00897718440ca8ca8c 356 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 274 2.5E-41 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 NIDE_RS13165 36d0ea606c36ab00897718440ca8ca8c 356 PANTHER PTHR10366 3 344 7.2E-154 T 23-04-2016 NIDE_RS13165 36d0ea606c36ab00897718440ca8ca8c 356 PANTHER PTHR10366:SF37 3 344 7.2E-154 T 23-04-2016 NIDE_RS13165 36d0ea606c36ab00897718440ca8ca8c 356 Gene3D G3DSA:3.90.25.10 231 349 4.8E-13 T 23-04-2016 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 752 813 1.2E-29 T 23-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 18 824 2.2E-300 T 23-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 Pfam PF01751 Toprim domain 429 551 6.7E-18 T 23-04-2016 IPR006171 Toprim domain NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 15 824 96.332 T 23-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 Gene3D G3DSA:3.30.230.10 231 401 4.0E-73 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 SMART SM00433 47 817 2.8E-284 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 Pfam PF00204 DNA gyrase B 232 400 1.4E-62 T 23-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 46 184 6.5E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 SUPERFAMILY SSF56719 404 580 8.89E-85 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 SUPERFAMILY SSF56719 750 817 8.89E-85 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 ProSitePatterns PS00177 DNA topoisomerase II signature. 432 440 - T 23-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR00418 DNA topoisomerase II family signature 278 291 7.0E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR00418 DNA topoisomerase II family signature 507 523 7.0E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR00418 DNA topoisomerase II family signature 756 772 7.0E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR00418 DNA topoisomerase II family signature 82 95 7.0E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR00418 DNA topoisomerase II family signature 545 557 7.0E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR00418 DNA topoisomerase II family signature 125 139 7.0E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR00418 DNA topoisomerase II family signature 525 542 7.0E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR00418 DNA topoisomerase II family signature 47 62 7.0E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR00418 DNA topoisomerase II family signature 430 444 7.0E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 Gene3D G3DSA:3.30.565.10 18 229 2.7E-92 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 SUPERFAMILY SSF55874 18 229 2.49E-70 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PANTHER PTHR10169 741 824 5.6E-303 T 23-04-2016 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PANTHER PTHR10169 1 573 5.6E-303 T 23-04-2016 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 SUPERFAMILY SSF54211 232 401 1.42E-58 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 Gene3D G3DSA:3.40.50.670 414 570 1.2E-93 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 Gene3D G3DSA:3.40.50.670 741 806 1.2E-93 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 SMART SM00387 43 187 6.7E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR01159 DNA gyrase subunit B signature 480 489 2.4E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR01159 DNA gyrase subunit B signature 370 384 2.4E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR01159 DNA gyrase subunit B signature 231 253 2.4E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR01159 DNA gyrase subunit B signature 207 220 2.4E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR01159 DNA gyrase subunit B signature 192 207 2.4E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR01159 DNA gyrase subunit B signature 18 28 2.4E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR01159 DNA gyrase subunit B signature 777 789 2.4E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR01159 DNA gyrase subunit B signature 322 338 2.4E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR01159 DNA gyrase subunit B signature 793 809 2.4E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS00015 d5ec7358e589c70adb8ab5caa73bda3d 824 PRINTS PR01159 DNA gyrase subunit B signature 384 404 2.4E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 NIDE_RS08910 36a178b313fbf09791799aecab0df351 991 Pfam PF05860 haemagglutination activity domain 53 149 9.9E-25 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS08910 36a178b313fbf09791799aecab0df351 991 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 69 149 1.1E-20 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS08910 36a178b313fbf09791799aecab0df351 991 SUPERFAMILY SSF51126 659 770 8.16E-5 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS08910 36a178b313fbf09791799aecab0df351 991 SMART SM00912 40 155 2.6E-16 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS08910 36a178b313fbf09791799aecab0df351 991 SUPERFAMILY SSF51126 293 382 1.04E-29 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS08910 36a178b313fbf09791799aecab0df351 991 SUPERFAMILY SSF51126 53 262 1.04E-29 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS08910 36a178b313fbf09791799aecab0df351 991 Gene3D G3DSA:2.160.20.10 332 380 3.1E-21 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS08910 36a178b313fbf09791799aecab0df351 991 Gene3D G3DSA:2.160.20.10 471 514 3.1E-21 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS08910 36a178b313fbf09791799aecab0df351 991 Gene3D G3DSA:2.160.20.10 47 232 3.1E-21 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS08910 36a178b313fbf09791799aecab0df351 991 SUPERFAMILY SSF51126 535 653 8.79E-6 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS11505 ac03bbf2eaa69e5311b73bcf542af108 84 SMART SM00966 6 49 1.9E-5 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 NIDE_RS11505 ac03bbf2eaa69e5311b73bcf542af108 84 Gene3D G3DSA:2.10.260.10 1 71 1.0E-18 T 23-04-2016 NIDE_RS11505 ac03bbf2eaa69e5311b73bcf542af108 84 SUPERFAMILY SSF89447 1 60 2.27E-12 T 23-04-2016 NIDE_RS05440 9fb048649e5e4f5aa842eeb3b2391aa1 252 Pfam PF08867 FRG domain 21 117 4.7E-25 T 23-04-2016 IPR014966 FRG domain NIDE_RS05440 9fb048649e5e4f5aa842eeb3b2391aa1 252 SMART SM00901 18 129 2.1E-20 T 23-04-2016 IPR014966 FRG domain NIDE_RS08830 7d4f77fa984e695d040b03b3bea4cb27 74 Pfam PF11154 Protein of unknown function (DUF2934) 34 66 7.7E-9 T 23-04-2016 IPR021327 Protein of unknown function DUF2934 NIDE_RS17980 e7817e5b43989ae1fff2fc214b509587 574 PANTHER PTHR30221 119 560 1.1E-183 T 23-04-2016 NIDE_RS17980 e7817e5b43989ae1fff2fc214b509587 574 SUPERFAMILY SSF82689 439 525 9.81E-16 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 NIDE_RS17980 e7817e5b43989ae1fff2fc214b509587 574 Gene3D G3DSA:2.30.30.60 376 425 1.8E-15 T 23-04-2016 NIDE_RS17980 e7817e5b43989ae1fff2fc214b509587 574 Gene3D G3DSA:3.30.70.100 440 518 1.5E-9 T 23-04-2016 NIDE_RS17980 e7817e5b43989ae1fff2fc214b509587 574 PANTHER PTHR30221:SF4 119 560 1.1E-183 T 23-04-2016 NIDE_RS17980 e7817e5b43989ae1fff2fc214b509587 574 Pfam PF00924 Mechanosensitive ion channel 317 520 4.7E-38 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 NIDE_RS17980 e7817e5b43989ae1fff2fc214b509587 574 SUPERFAMILY SSF50182 361 426 1.93E-15 T 23-04-2016 IPR010920 LSM domain NIDE_RS09610 ac843aa22f67a9a5dc0aaefef4bdd146 220 PANTHER PTHR21712 1 214 4.8E-36 T 23-04-2016 NIDE_RS09610 ac843aa22f67a9a5dc0aaefef4bdd146 220 Gene3D G3DSA:3.40.109.10 13 216 1.3E-43 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS09610 ac843aa22f67a9a5dc0aaefef4bdd146 220 SUPERFAMILY SSF55469 14 217 5.89E-47 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS09610 ac843aa22f67a9a5dc0aaefef4bdd146 220 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 8 208 3.8E-73 T 23-04-2016 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5508|MetaCyc: PWY-5523 NIDE_RS09610 ac843aa22f67a9a5dc0aaefef4bdd146 220 Pfam PF00881 Nitroreductase family 18 183 7.4E-27 T 23-04-2016 IPR029479 Nitroreductase NIDE_RS09610 ac843aa22f67a9a5dc0aaefef4bdd146 220 PANTHER PTHR21712:SF31 1 214 4.8E-36 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Pfam PF10531 SLBB domain 184 233 1.1E-7 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Pfam PF10531 SLBB domain 332 386 6.1E-10 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Pfam PF10531 SLBB domain 110 154 5.3E-10 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Pfam PF10531 SLBB domain 557 601 7.4E-13 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Pfam PF10531 SLBB domain 481 531 4.2E-9 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Pfam PF10531 SLBB domain 630 677 2.0E-13 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Pfam PF10531 SLBB domain 705 753 1.1E-9 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Pfam PF10531 SLBB domain 258 309 1.2E-12 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Pfam PF10531 SLBB domain 408 458 7.6E-12 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Gene3D G3DSA:3.10.560.10 177 243 2.0E-10 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Gene3D G3DSA:3.10.560.10 397 472 9.9E-14 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Gene3D G3DSA:3.10.560.10 248 322 3.4E-13 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Gene3D G3DSA:3.10.560.10 325 380 1.1E-11 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Gene3D G3DSA:3.10.560.10 546 607 2.9E-13 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Gene3D G3DSA:3.10.560.10 623 682 9.6E-14 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Gene3D G3DSA:3.10.560.10 476 529 2.1E-11 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Gene3D G3DSA:3.10.560.10 697 758 7.8E-9 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Gene3D G3DSA:3.10.560.10 101 176 3.2E-11 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Pfam PF02563 Polysaccharide biosynthesis/export protein 32 104 3.9E-19 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 PANTHER PTHR33619 28 707 1.8E-47 T 23-04-2016 NIDE_RS12290 dcabdf2ed4f97344753d6092cff22aea 777 Gene3D G3DSA:3.30.1950.10 38 100 4.7E-16 T 23-04-2016 NIDE_RS10480 dfbd643ce4939225a44242351069115e 146 Pfam PF02050 Flagellar FliJ protein 16 137 2.1E-8 T 23-04-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 NIDE_RS02140 de97a028ac0027dfb12e8795551fcff7 278 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 217 271 1.1E-8 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS02140 de97a028ac0027dfb12e8795551fcff7 278 SUPERFAMILY SSF74653 177 273 1.29E-10 T 23-04-2016 NIDE_RS02140 de97a028ac0027dfb12e8795551fcff7 278 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 218 273 3.7E-5 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS02140 de97a028ac0027dfb12e8795551fcff7 278 Gene3D G3DSA:3.30.1150.10 217 270 1.1E-10 T 23-04-2016 NIDE_RS06320 ce3c196c55489666be99826386b4d558 276 Pfam PF01226 Formate/nitrite transporter 22 251 2.2E-62 T 23-04-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 NIDE_RS06320 ce3c196c55489666be99826386b4d558 276 PANTHER PTHR30520:SF5 7 254 7.6E-80 T 23-04-2016 NIDE_RS06320 ce3c196c55489666be99826386b4d558 276 Gene3D G3DSA:1.20.1080.10 22 252 2.1E-66 T 23-04-2016 IPR023271 Aquaporin-like NIDE_RS06320 ce3c196c55489666be99826386b4d558 276 PANTHER PTHR30520 7 254 7.6E-80 T 23-04-2016 NIDE_RS10215 b0e244a20956615ea6ce83d937aaa6e2 171 SUPERFAMILY SSF69255 7 83 1.31E-16 T 23-04-2016 NIDE_RS10215 b0e244a20956615ea6ce83d937aaa6e2 171 Gene3D G3DSA:2.40.50.230 19 83 4.6E-11 T 23-04-2016 IPR006531 Gp5 N-terminal NIDE_RS07045 805114d46ad4f06d5bf7d1f635f91f7c 137 PANTHER PTHR30615 1 137 6.6E-82 T 23-04-2016 NIDE_RS07045 805114d46ad4f06d5bf7d1f635f91f7c 137 SUPERFAMILY SSF111038 1 137 2.22E-46 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 NIDE_RS07045 805114d46ad4f06d5bf7d1f635f91f7c 137 Pfam PF01894 Uncharacterised protein family UPF0047 20 134 1.9E-37 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 NIDE_RS07045 805114d46ad4f06d5bf7d1f635f91f7c 137 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 8 137 3.3E-35 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 NIDE_RS07045 805114d46ad4f06d5bf7d1f635f91f7c 137 Gene3D G3DSA:2.60.120.460 1 137 1.8E-49 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 NIDE_RS07045 805114d46ad4f06d5bf7d1f635f91f7c 137 PANTHER PTHR30615:SF2 1 137 6.6E-82 T 23-04-2016 NIDE_RS07045 805114d46ad4f06d5bf7d1f635f91f7c 137 PIRSF PIRSF004681 1 137 1.0E-42 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 NIDE_RS17680 2444cddae346cf021442e0b3498181b9 186 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 54 137 1.0E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17680 2444cddae346cf021442e0b3498181b9 186 SUPERFAMILY SSF46626 8 142 8.09E-22 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17680 2444cddae346cf021442e0b3498181b9 186 Gene3D G3DSA:1.10.760.10 43 144 5.3E-21 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 PANTHER PTHR22939 98 417 5.0E-120 T 23-04-2016 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 PANTHER PTHR22939 8 76 5.0E-120 T 23-04-2016 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 SMART SM00228 415 483 5.8E-13 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 SMART SM00228 289 371 2.1E-14 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 PANTHER PTHR22939:SF79 98 417 5.0E-120 T 23-04-2016 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 PANTHER PTHR22939:SF79 8 76 5.0E-120 T 23-04-2016 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 55 488 5.8E-154 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 Pfam PF13180 PDZ domain 289 379 5.4E-20 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 Pfam PF13180 PDZ domain 423 490 2.8E-12 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 Pfam PF13365 Trypsin-like peptidase domain 116 250 1.1E-33 T 23-04-2016 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 PRINTS PR00834 HtrA/DegQ protease family signature 146 166 9.7E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 PRINTS PR00834 HtrA/DegQ protease family signature 329 341 9.7E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 PRINTS PR00834 HtrA/DegQ protease family signature 125 137 9.7E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 PRINTS PR00834 HtrA/DegQ protease family signature 221 238 9.7E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 PRINTS PR00834 HtrA/DegQ protease family signature 186 210 9.7E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 PRINTS PR00834 HtrA/DegQ protease family signature 243 260 9.7E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 Gene3D G3DSA:2.30.42.10 291 387 1.6E-30 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 Gene3D G3DSA:2.40.10.10 55 177 2.1E-36 T 23-04-2016 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 Gene3D G3DSA:2.40.10.10 178 290 2.3E-42 T 23-04-2016 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 SUPERFAMILY SSF50156 247 371 4.34E-24 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 SUPERFAMILY SSF50156 400 490 1.04E-18 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS01395 5f907259c70825af58e24573c850a769 492 SUPERFAMILY SSF50494 54 280 3.14E-63 T 23-04-2016 IPR009003 Peptidase S1, PA clan NIDE_RS01395 5f907259c70825af58e24573c850a769 492 Gene3D G3DSA:2.30.42.10 400 490 2.7E-22 T 23-04-2016 IPR001478 PDZ domain GO:0005515 NIDE_RS05015 f987b59b0b4fcfe045f717e2715a7792 146 SUPERFAMILY SSF89447 1 137 1.12E-29 T 23-04-2016 NIDE_RS05015 f987b59b0b4fcfe045f717e2715a7792 146 Pfam PF02381 MraZ protein, putative antitoxin-like 77 134 3.1E-11 T 23-04-2016 IPR020603 MraZ domain NIDE_RS05015 f987b59b0b4fcfe045f717e2715a7792 146 Pfam PF02381 MraZ protein, putative antitoxin-like 1 70 1.0E-13 T 23-04-2016 IPR020603 MraZ domain NIDE_RS05015 f987b59b0b4fcfe045f717e2715a7792 146 Gene3D G3DSA:2.10.260.10 7 29 8.8E-4 T 23-04-2016 NIDE_RS05015 f987b59b0b4fcfe045f717e2715a7792 146 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 127 2.0E-17 T 23-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 NIDE_RS05015 f987b59b0b4fcfe045f717e2715a7792 146 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 146 31.694 T 23-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 NIDE_RS05015 f987b59b0b4fcfe045f717e2715a7792 146 PANTHER PTHR34701 2 137 3.8E-26 T 23-04-2016 NIDE_RS09600 a150e43afe31f6a22338225b4b398d1d 263 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 NIDE_RS09600 a150e43afe31f6a22338225b4b398d1d 263 PANTHER PTHR21091 1 207 6.9E-66 T 23-04-2016 NIDE_RS09600 a150e43afe31f6a22338225b4b398d1d 263 SUPERFAMILY SSF53790 2 248 7.2E-70 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS09600 a150e43afe31f6a22338225b4b398d1d 263 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 248 4.2E-105 T 23-04-2016 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 NIDE_RS09600 a150e43afe31f6a22338225b4b398d1d 263 Gene3D G3DSA:3.40.1010.10 2 110 9.4E-34 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 NIDE_RS09600 a150e43afe31f6a22338225b4b398d1d 263 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 2 207 2.2E-49 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 NIDE_RS09600 a150e43afe31f6a22338225b4b398d1d 263 PANTHER PTHR21091:SF17 1 207 6.9E-66 T 23-04-2016 NIDE_RS09600 a150e43afe31f6a22338225b4b398d1d 263 Gene3D G3DSA:3.30.950.10 111 231 1.7E-39 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 NIDE_RS14385 3d050343cda89a399ac4223642e90c11 261 SUPERFAMILY SSF111369 44 251 8.63E-24 T 23-04-2016 NIDE_RS14385 3d050343cda89a399ac4223642e90c11 261 Gene3D G3DSA:2.40.50.100 130 178 5.2E-12 T 23-04-2016 NIDE_RS14385 3d050343cda89a399ac4223642e90c11 261 Gene3D G3DSA:2.40.50.100 48 84 5.2E-12 T 23-04-2016 NIDE_RS14385 3d050343cda89a399ac4223642e90c11 261 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 259 1.2E-35 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS14385 3d050343cda89a399ac4223642e90c11 261 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 52 235 1.2E-13 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS14385 3d050343cda89a399ac4223642e90c11 261 PANTHER PTHR30469 44 257 5.6E-30 T 23-04-2016 NIDE_RS03210 fc4c2113ab466fdd8a395a494b99ec9d 219 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 85 168 2.2E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS03210 fc4c2113ab466fdd8a395a494b99ec9d 219 Gene3D G3DSA:1.10.760.10 75 175 5.8E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS03210 fc4c2113ab466fdd8a395a494b99ec9d 219 SUPERFAMILY SSF46626 15 174 5.02E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS12255 0675888577092e2a964a2e27a567be4d 298 SUPERFAMILY SSF52540 22 262 9.87E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12255 0675888577092e2a964a2e27a567be4d 298 PANTHER PTHR24220 26 276 1.2E-81 T 23-04-2016 NIDE_RS12255 0675888577092e2a964a2e27a567be4d 298 Pfam PF00005 ABC transporter 46 201 2.5E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS12255 0675888577092e2a964a2e27a567be4d 298 Gene3D G3DSA:3.40.50.300 26 264 6.8E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS12255 0675888577092e2a964a2e27a567be4d 298 PANTHER PTHR24220:SF73 26 276 1.2E-81 T 23-04-2016 NIDE_RS12255 0675888577092e2a964a2e27a567be4d 298 SMART SM00382 55 258 2.8E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS13085 331325f7c1e77f2fe2a8a01fa2dc3cc7 350 PANTHER PTHR30347:SF1 1 348 7.3E-84 T 23-04-2016 NIDE_RS13085 331325f7c1e77f2fe2a8a01fa2dc3cc7 350 Gene3D G3DSA:3.30.420.10 203 328 1.8E-9 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS13085 331325f7c1e77f2fe2a8a01fa2dc3cc7 350 Pfam PF13358 DDE superfamily endonuclease 167 313 9.5E-28 T 23-04-2016 NIDE_RS13085 331325f7c1e77f2fe2a8a01fa2dc3cc7 350 Pfam PF13565 Homeodomain-like domain 54 126 8.9E-13 T 23-04-2016 NIDE_RS13085 331325f7c1e77f2fe2a8a01fa2dc3cc7 350 SUPERFAMILY SSF53098 201 329 1.69E-6 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS13085 331325f7c1e77f2fe2a8a01fa2dc3cc7 350 SUPERFAMILY SSF46689 28 129 1.88E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS13085 331325f7c1e77f2fe2a8a01fa2dc3cc7 350 PANTHER PTHR30347 1 348 7.3E-84 T 23-04-2016 NIDE_RS01905 bbcb80d918673b195b4cf7ccdf4484db 306 SUPERFAMILY SSF52540 42 295 2.03E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01905 bbcb80d918673b195b4cf7ccdf4484db 306 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 40 292 1.7E-72 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein NIDE_RS01905 bbcb80d918673b195b4cf7ccdf4484db 306 PANTHER PTHR23264:SF19 24 300 1.4E-88 T 23-04-2016 NIDE_RS01905 bbcb80d918673b195b4cf7ccdf4484db 306 Gene3D G3DSA:3.40.50.300 30 291 8.2E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS01905 bbcb80d918673b195b4cf7ccdf4484db 306 Hamap MF_02040 Iron-sulfur cluster carrier protein. 35 293 28.815 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein NIDE_RS01905 bbcb80d918673b195b4cf7ccdf4484db 306 PANTHER PTHR23264 24 300 1.4E-88 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein NIDE_RS12355 d42b1a137b5b5f8ad2daa987b84da48a 195 Pfam PF02397 Bacterial sugar transferase 1 174 6.2E-54 T 23-04-2016 IPR003362 Bacterial sugar transferase NIDE_RS12355 d42b1a137b5b5f8ad2daa987b84da48a 195 PANTHER PTHR30576:SF8 1 182 1.9E-92 T 23-04-2016 NIDE_RS12355 d42b1a137b5b5f8ad2daa987b84da48a 195 PANTHER PTHR30576 1 182 1.9E-92 T 23-04-2016 NIDE_RS12690 b0d67727897361ecf4fd93c10c326ce2 102 PANTHER PTHR33777 1 102 1.3E-34 T 23-04-2016 NIDE_RS12690 b0d67727897361ecf4fd93c10c326ce2 102 Gene3D G3DSA:3.30.70.930 1 94 2.6E-33 T 23-04-2016 IPR029756 MTH1187/YkoF-like NIDE_RS12690 b0d67727897361ecf4fd93c10c326ce2 102 SUPERFAMILY SSF89957 1 96 5.76E-31 T 23-04-2016 IPR029756 MTH1187/YkoF-like NIDE_RS12690 b0d67727897361ecf4fd93c10c326ce2 102 PANTHER PTHR33777:SF1 1 102 1.3E-34 T 23-04-2016 NIDE_RS12690 b0d67727897361ecf4fd93c10c326ce2 102 TIGRFAM TIGR00106 TIGR00106: uncharacterized protein, MTH1187 family 3 95 1.1E-24 T 23-04-2016 IPR002767 Thiamine-binding protein NIDE_RS12690 b0d67727897361ecf4fd93c10c326ce2 102 Pfam PF01910 Thiamine-binding protein 5 93 1.1E-29 T 23-04-2016 IPR002767 Thiamine-binding protein NIDE_RS01245 2c75dbde156f9519b84f4ae50ba93332 105 SUPERFAMILY SSF46894 13 75 3.2E-17 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS01245 2c75dbde156f9519b84f4ae50ba93332 105 SMART SM00421 12 69 1.4E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS01245 2c75dbde156f9519b84f4ae50ba93332 105 ProSitePatterns PS00622 LuxR-type HTH domain signature. 29 56 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS01245 2c75dbde156f9519b84f4ae50ba93332 105 Gene3D G3DSA:1.10.10.10 16 75 1.5E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS01245 2c75dbde156f9519b84f4ae50ba93332 105 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 15 29 3.0E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS01245 2c75dbde156f9519b84f4ae50ba93332 105 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 45 57 3.0E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS01245 2c75dbde156f9519b84f4ae50ba93332 105 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 29 45 3.0E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS01245 2c75dbde156f9519b84f4ae50ba93332 105 Pfam PF00196 Bacterial regulatory proteins, luxR family 16 69 2.3E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS19050 144c9f5d486887329c383fdad1e5790a 279 Pfam PF03781 Sulfatase-modifying factor enzyme 1 43 275 5.1E-56 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS19050 144c9f5d486887329c383fdad1e5790a 279 Gene3D G3DSA:3.90.1580.10 31 278 1.3E-70 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme NIDE_RS19050 144c9f5d486887329c383fdad1e5790a 279 PANTHER PTHR23150 43 278 1.3E-64 T 23-04-2016 NIDE_RS19050 144c9f5d486887329c383fdad1e5790a 279 SUPERFAMILY SSF56436 40 278 1.56E-69 T 23-04-2016 IPR016187 C-type lectin fold NIDE_RS02800 0ff4d1e39cb6577f243f7f68905a3fd5 101 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 96 5.0E-24 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 NIDE_RS02800 0ff4d1e39cb6577f243f7f68905a3fd5 101 PANTHER PTHR11434 4 100 8.8E-38 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 NIDE_RS02800 0ff4d1e39cb6577f243f7f68905a3fd5 101 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 3 101 20.399 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 NIDE_RS05720 2132cde43a0d3653aa9a9d13050fcf80 132 Gene3D G3DSA:2.60.40.420 41 131 2.0E-13 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS05720 2132cde43a0d3653aa9a9d13050fcf80 132 Pfam PF13473 Cupredoxin-like domain 34 111 4.2E-9 T 23-04-2016 IPR028096 EfeO-type cupredoxin-like domain NIDE_RS05720 2132cde43a0d3653aa9a9d13050fcf80 132 SUPERFAMILY SSF49503 31 131 4.42E-17 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS14680 0ea71ac2c5f301b494d683ef73757e8f 160 Pfam PF14338 Mrr N-terminal domain 13 94 2.1E-14 T 23-04-2016 IPR025745 Restriction system protein Mrr-like N-terminal domain NIDE_RS18730 41bba592acfb90fad12525d6e372bf10 271 Gene3D G3DSA:3.40.1210.10 4 251 4.9E-86 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 NIDE_RS18730 41bba592acfb90fad12525d6e372bf10 271 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 5 236 6.1E-70 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 NIDE_RS18730 41bba592acfb90fad12525d6e372bf10 271 PANTHER PTHR30457 5 251 7.5E-93 T 23-04-2016 NIDE_RS18730 41bba592acfb90fad12525d6e372bf10 271 SUPERFAMILY SSF64167 5 247 4.32E-80 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 NIDE_RS18730 41bba592acfb90fad12525d6e372bf10 271 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 4 253 37.865 T 23-04-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 NIDE_RS18730 41bba592acfb90fad12525d6e372bf10 271 Pfam PF01975 Survival protein SurE 6 186 7.5E-57 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 NIDE_RS20555 519e70d6c3a11d615923d9b513864869 313 PANTHER PTHR35007:SF1 111 313 2.4E-58 T 23-04-2016 NIDE_RS20555 519e70d6c3a11d615923d9b513864869 313 Pfam PF00482 Type II secretion system (T2SS), protein F 146 271 1.9E-20 T 23-04-2016 IPR018076 Type II secretion system F domain NIDE_RS20555 519e70d6c3a11d615923d9b513864869 313 PANTHER PTHR35007 111 313 2.4E-58 T 23-04-2016 NIDE_RS00835 7b8a49b0d230c8791e679842470edc53 204 Gene3D G3DSA:3.40.50.1390 7 136 2.1E-34 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS00835 7b8a49b0d230c8791e679842470edc53 204 Gene3D G3DSA:1.10.10.60 157 201 4.2E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS00835 7b8a49b0d230c8791e679842470edc53 204 ProSitePatterns PS00397 Site-specific recombinases active site. 11 19 - T 23-04-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 NIDE_RS00835 7b8a49b0d230c8791e679842470edc53 204 PANTHER PTHR30461 4 204 8.2E-47 T 23-04-2016 NIDE_RS00835 7b8a49b0d230c8791e679842470edc53 204 SMART SM00857 8 153 1.7E-56 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS00835 7b8a49b0d230c8791e679842470edc53 204 SUPERFAMILY SSF53041 6 150 4.71E-39 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS00835 7b8a49b0d230c8791e679842470edc53 204 Pfam PF00239 Resolvase, N terminal domain 8 150 2.6E-44 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 NIDE_RS17830 5236d2dae4c859fa2f1a5a01c7c1917d 580 PANTHER PTHR33908 18 479 1.4E-48 T 23-04-2016 NIDE_RS17830 5236d2dae4c859fa2f1a5a01c7c1917d 580 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 91 248 3.3E-22 T 23-04-2016 NIDE_RS17830 5236d2dae4c859fa2f1a5a01c7c1917d 580 PANTHER PTHR33908:SF3 18 479 1.4E-48 T 23-04-2016 NIDE_RS04165 311fc39415baa26ce612c0b1c009b0c9 257 Pfam PF09459 Ethylbenzene dehydrogenase 148 205 4.9E-13 T 23-04-2016 IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain GO:0020037 NIDE_RS04005 0942b1509735836deb76868e9f8142b6 353 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 3 352 33.67 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 NIDE_RS04005 0942b1509735836deb76868e9f8142b6 353 Gene3D G3DSA:3.20.20.120 17 136 6.9E-5 T 23-04-2016 IPR029065 Enolase C-terminal domain-like NIDE_RS04005 0942b1509735836deb76868e9f8142b6 353 PANTHER PTHR30454 3 353 2.2E-185 T 23-04-2016 NIDE_RS04005 0942b1509735836deb76868e9f8142b6 353 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 5 347 1.7E-127 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 NIDE_RS04005 0942b1509735836deb76868e9f8142b6 353 Pfam PF04551 GcpE protein 8 348 5.7E-134 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 NIDE_RS04005 0942b1509735836deb76868e9f8142b6 353 PIRSF PIRSF004640 1 353 5.8E-147 T 23-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 NIDE_RS04005 0942b1509735836deb76868e9f8142b6 353 SUPERFAMILY SSF51604 17 134 9.18E-8 T 23-04-2016 IPR029065 Enolase C-terminal domain-like NIDE_RS04005 0942b1509735836deb76868e9f8142b6 353 SUPERFAMILY SSF56014 261 348 3.27E-12 T 23-04-2016 NIDE_RS02420 f8ecffb815334feb507c454d379a0304 277 PANTHER PTHR31302:SF6 57 274 1.5E-40 T 23-04-2016 NIDE_RS02420 f8ecffb815334feb507c454d379a0304 277 Gene3D G3DSA:3.60.21.10 57 247 8.1E-25 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like NIDE_RS02420 f8ecffb815334feb507c454d379a0304 277 SUPERFAMILY SSF56300 56 275 3.52E-32 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like NIDE_RS02420 f8ecffb815334feb507c454d379a0304 277 PANTHER PTHR31302 57 274 1.5E-40 T 23-04-2016 NIDE_RS02420 f8ecffb815334feb507c454d379a0304 277 Pfam PF00149 Calcineurin-like phosphoesterase 57 217 6.0E-12 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 NIDE_RS11990 172a21332c20b4fc6e4ab63bd8ba932d 88 SMART SM00530 20 75 7.4E-14 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS11990 172a21332c20b4fc6e4ab63bd8ba932d 88 SUPERFAMILY SSF47413 15 78 1.77E-15 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS11990 172a21332c20b4fc6e4ab63bd8ba932d 88 Gene3D G3DSA:1.10.260.40 16 76 5.0E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS11990 172a21332c20b4fc6e4ab63bd8ba932d 88 Pfam PF01381 Helix-turn-helix 22 74 4.3E-16 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS05920 045943e9509a8bbe2452f0bde6a6dbda 322 Pfam PF00005 ABC transporter 18 160 2.1E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS05920 045943e9509a8bbe2452f0bde6a6dbda 322 PANTHER PTHR24220:SF160 3 262 4.3E-85 T 23-04-2016 NIDE_RS05920 045943e9509a8bbe2452f0bde6a6dbda 322 SMART SM00382 26 207 1.9E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS05920 045943e9509a8bbe2452f0bde6a6dbda 322 Gene3D G3DSA:3.40.50.300 1 224 1.6E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05920 045943e9509a8bbe2452f0bde6a6dbda 322 SUPERFAMILY SSF52540 1 221 1.46E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05920 045943e9509a8bbe2452f0bde6a6dbda 322 PANTHER PTHR24220 3 262 4.3E-85 T 23-04-2016 NIDE_RS10390 981bb827d206c98dbe640043685f48d3 125 Pfam PF07238 PilZ domain 4 97 1.8E-9 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS10390 981bb827d206c98dbe640043685f48d3 125 Gene3D G3DSA:2.40.10.220 10 98 1.1E-10 T 23-04-2016 NIDE_RS10390 981bb827d206c98dbe640043685f48d3 125 SUPERFAMILY SSF141371 4 98 7.85E-11 T 23-04-2016 NIDE_RS00655 9dca70ec39be06ad1a71a73d532cd836 337 Pfam PF06250 Protein of unknown function (DUF1016) 11 322 4.5E-110 T 23-04-2016 IPR009362 Protein of unknown function DUF1016 NIDE_RS00655 9dca70ec39be06ad1a71a73d532cd836 337 PANTHER PTHR30547:SF0 12 321 1.4E-100 T 23-04-2016 NIDE_RS00655 9dca70ec39be06ad1a71a73d532cd836 337 PANTHER PTHR30547 12 321 1.4E-100 T 23-04-2016 NIDE_RS13120 90afc33f4ad26c4ff1ea7e4899f37ff0 425 Gene3D G3DSA:3.40.640.10 30 203 2.1E-40 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 NIDE_RS13120 90afc33f4ad26c4ff1ea7e4899f37ff0 425 PANTHER PTHR30244 250 400 4.6E-27 T 23-04-2016 NIDE_RS13120 90afc33f4ad26c4ff1ea7e4899f37ff0 425 PANTHER PTHR30244 37 209 4.6E-27 T 23-04-2016 NIDE_RS13120 90afc33f4ad26c4ff1ea7e4899f37ff0 425 PIRSF PIRSF000390 25 401 2.7E-46 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS13120 90afc33f4ad26c4ff1ea7e4899f37ff0 425 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 30 393 3.0E-42 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIDE_RS13120 90afc33f4ad26c4ff1ea7e4899f37ff0 425 SUPERFAMILY SSF53383 252 396 7.5E-49 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS13120 90afc33f4ad26c4ff1ea7e4899f37ff0 425 SUPERFAMILY SSF53383 29 214 7.5E-49 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase NIDE_RS13120 90afc33f4ad26c4ff1ea7e4899f37ff0 425 PANTHER PTHR30244:SF13 250 400 4.6E-27 T 23-04-2016 NIDE_RS13120 90afc33f4ad26c4ff1ea7e4899f37ff0 425 PANTHER PTHR30244:SF13 37 209 4.6E-27 T 23-04-2016 NIDE_RS13120 90afc33f4ad26c4ff1ea7e4899f37ff0 425 Gene3D G3DSA:3.90.1150.10 296 397 5.6E-6 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 NIDE_RS14255 a6055fc9f69bd27cb4a6e6e7f7ece0fd 334 PANTHER PTHR11820 1 32 4.1E-95 T 23-04-2016 NIDE_RS14255 a6055fc9f69bd27cb4a6e6e7f7ece0fd 334 PANTHER PTHR11820 51 328 4.1E-95 T 23-04-2016 NIDE_RS14255 a6055fc9f69bd27cb4a6e6e7f7ece0fd 334 SUPERFAMILY SSF56529 109 324 2.75E-65 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 NIDE_RS14255 a6055fc9f69bd27cb4a6e6e7f7ece0fd 334 PANTHER PTHR11820:SF88 1 32 4.1E-95 T 23-04-2016 NIDE_RS14255 a6055fc9f69bd27cb4a6e6e7f7ece0fd 334 PANTHER PTHR11820:SF88 51 328 4.1E-95 T 23-04-2016 NIDE_RS14255 a6055fc9f69bd27cb4a6e6e7f7ece0fd 334 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 113 324 3.4E-58 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 NIDE_RS14255 a6055fc9f69bd27cb4a6e6e7f7ece0fd 334 Gene3D G3DSA:3.90.850.10 101 328 1.7E-64 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 NIDE_RS19880 c1558ad1125a7bf0682482174e90c23b 148 PANTHER PTHR33303 6 136 3.9E-42 T 23-04-2016 NIDE_RS19880 c1558ad1125a7bf0682482174e90c23b 148 SUPERFAMILY SSF51735 10 134 5.91E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19880 c1558ad1125a7bf0682482174e90c23b 148 SMART SM00881 13 106 2.7E-21 T 23-04-2016 IPR003781 CoA-binding GO:0048037 NIDE_RS19880 c1558ad1125a7bf0682482174e90c23b 148 Pfam PF13380 CoA binding domain 18 132 1.8E-40 T 23-04-2016 IPR003781 CoA-binding GO:0048037 NIDE_RS19880 c1558ad1125a7bf0682482174e90c23b 148 Gene3D G3DSA:3.40.50.720 10 135 4.8E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS10155 03331014a8a949eb3c8d2b6f1f628898 173 PANTHER PTHR38009:SF1 6 160 5.9E-42 T 23-04-2016 NIDE_RS10155 03331014a8a949eb3c8d2b6f1f628898 173 PANTHER PTHR38009 6 160 5.9E-42 T 23-04-2016 NIDE_RS10155 03331014a8a949eb3c8d2b6f1f628898 173 Pfam PF06841 T4-like virus tail tube protein gp19 15 157 8.4E-45 T 23-04-2016 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 NIDE_RS10155 03331014a8a949eb3c8d2b6f1f628898 173 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 12 158 2.9E-45 T 23-04-2016 IPR011747 Conserved hypothetical protein CHP02241 NIDE_RS15840 d7573a5bede13eaf0cf75ecb6d4d0be3 250 Gene3D G3DSA:3.40.50.2300 2 123 1.5E-28 T 23-04-2016 NIDE_RS15840 d7573a5bede13eaf0cf75ecb6d4d0be3 250 PANTHER PTHR32071 1 149 2.7E-30 T 23-04-2016 NIDE_RS15840 d7573a5bede13eaf0cf75ecb6d4d0be3 250 SUPERFAMILY SSF52172 3 129 1.71E-30 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS15840 d7573a5bede13eaf0cf75ecb6d4d0be3 250 PANTHER PTHR32071:SF37 1 149 2.7E-30 T 23-04-2016 NIDE_RS15840 d7573a5bede13eaf0cf75ecb6d4d0be3 250 SMART SM00448 3 113 3.5E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS15840 d7573a5bede13eaf0cf75ecb6d4d0be3 250 Pfam PF00072 Response regulator receiver domain 5 113 6.0E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS12640 4a09df8701e321f52508815745bd9666 143 Pfam PF00572 Ribosomal protein L13 15 137 1.4E-57 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 NIDE_RS12640 4a09df8701e321f52508815745bd9666 143 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 7 140 2.1E-60 T 23-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 NIDE_RS12640 4a09df8701e321f52508815745bd9666 143 PANTHER PTHR11545 1 141 6.9E-72 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 NIDE_RS12640 4a09df8701e321f52508815745bd9666 143 Gene3D G3DSA:3.90.1180.10 4 141 5.0E-64 T 23-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 NIDE_RS12640 4a09df8701e321f52508815745bd9666 143 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 16 139 29.779 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 NIDE_RS12640 4a09df8701e321f52508815745bd9666 143 PIRSF PIRSF002181 1 142 1.2E-53 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 NIDE_RS12640 4a09df8701e321f52508815745bd9666 143 SUPERFAMILY SSF52161 3 139 2.62E-59 T 23-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 NIDE_RS14735 7af1c8fa6df9e0382ec183b8f6cac797 314 PANTHER PTHR10625 3 312 5.3E-137 T 23-04-2016 IPR000286 Histone deacetylase superfamily NIDE_RS14735 7af1c8fa6df9e0382ec183b8f6cac797 314 PRINTS PR01270 Histone deacetylase superfamily signature 241 251 7.1E-18 T 23-04-2016 IPR000286 Histone deacetylase superfamily NIDE_RS14735 7af1c8fa6df9e0382ec183b8f6cac797 314 PRINTS PR01270 Histone deacetylase superfamily signature 157 172 7.1E-18 T 23-04-2016 IPR000286 Histone deacetylase superfamily NIDE_RS14735 7af1c8fa6df9e0382ec183b8f6cac797 314 PRINTS PR01270 Histone deacetylase superfamily signature 123 146 7.1E-18 T 23-04-2016 IPR000286 Histone deacetylase superfamily NIDE_RS14735 7af1c8fa6df9e0382ec183b8f6cac797 314 PANTHER PTHR10625:SF104 3 312 5.3E-137 T 23-04-2016 NIDE_RS14735 7af1c8fa6df9e0382ec183b8f6cac797 314 Gene3D G3DSA:3.40.800.20 4 312 3.2E-123 T 23-04-2016 IPR023801 Histone deacetylase domain NIDE_RS14735 7af1c8fa6df9e0382ec183b8f6cac797 314 Pfam PF00850 Histone deacetylase domain 21 311 1.0E-98 T 23-04-2016 IPR023801 Histone deacetylase domain NIDE_RS14735 7af1c8fa6df9e0382ec183b8f6cac797 314 SUPERFAMILY SSF52768 3 312 8.15E-119 T 23-04-2016 NIDE_RS16030 c01def3d1b03d5205c2b83fbf99b8a64 1097 Gene3D G3DSA:1.50.10.10 848 897 7.6E-5 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 NIDE_RS16030 c01def3d1b03d5205c2b83fbf99b8a64 1097 SUPERFAMILY SSF48208 830 971 4.32E-12 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS16030 c01def3d1b03d5205c2b83fbf99b8a64 1097 SUPERFAMILY SSF48208 714 799 4.32E-12 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS09935 380cdc2fb20f3ac78897e27aba584420 133 SUPERFAMILY SSF51182 15 121 4.46E-21 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS09935 380cdc2fb20f3ac78897e27aba584420 133 Gene3D G3DSA:2.60.120.10 8 124 9.2E-35 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS09935 380cdc2fb20f3ac78897e27aba584420 133 Pfam PF07883 Cupin domain 32 101 1.4E-17 T 23-04-2016 IPR013096 Cupin 2, conserved barrel NIDE_RS03395 2377b903ea85b2c5123427503f120b4b 514 Pfam PF01943 Polysaccharide biosynthesis protein 8 262 3.8E-16 T 23-04-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 NIDE_RS03395 2377b903ea85b2c5123427503f120b4b 514 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 337 473 3.0E-15 T 23-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain NIDE_RS01220 6d429c38353e5f572179b90bcc62f13a 400 SUPERFAMILY SSF53822 30 395 3.1E-73 T 23-04-2016 IPR028082 Periplasmic binding protein-like I NIDE_RS01220 6d429c38353e5f572179b90bcc62f13a 400 PANTHER PTHR30483 28 400 1.6E-55 T 23-04-2016 NIDE_RS01220 6d429c38353e5f572179b90bcc62f13a 400 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 3.6E-6 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NIDE_RS01220 6d429c38353e5f572179b90bcc62f13a 400 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 72 90 3.6E-6 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NIDE_RS01220 6d429c38353e5f572179b90bcc62f13a 400 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 3.6E-6 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 NIDE_RS01220 6d429c38353e5f572179b90bcc62f13a 400 Pfam PF13458 Periplasmic binding protein 30 368 6.7E-69 T 23-04-2016 IPR028081 Leucine-binding protein domain NIDE_RS01220 6d429c38353e5f572179b90bcc62f13a 400 Gene3D G3DSA:3.40.50.2300 29 228 4.4E-46 T 23-04-2016 NIDE_RS18445 0244613e97231c1007a98fd45ed25aef 90 SUPERFAMILY SSF54285 1 76 3.18E-7 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NIDE_RS18445 0244613e97231c1007a98fd45ed25aef 90 Gene3D G3DSA:3.10.20.30 1 76 1.3E-10 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS18445 0244613e97231c1007a98fd45ed25aef 90 Pfam PF02597 ThiS family 4 76 9.1E-7 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 NIDE_RS15485 cd6870d6721b5d314287313f3bfd3791 440 PANTHER PTHR36454:SF1 1 440 9.5E-93 T 23-04-2016 NIDE_RS15485 cd6870d6721b5d314287313f3bfd3791 440 PANTHER PTHR36454 1 440 9.5E-93 T 23-04-2016 NIDE_RS15485 cd6870d6721b5d314287313f3bfd3791 440 PIRSF PIRSF033563 1 439 2.8E-83 T 23-04-2016 IPR008323 Uncharacterised conserved protein UCP033563 NIDE_RS15485 cd6870d6721b5d314287313f3bfd3791 440 Pfam PF06245 Protein of unknown function (DUF1015) 4 436 7.3E-116 T 23-04-2016 IPR008323 Uncharacterised conserved protein UCP033563 NIDE_RS18500 48428b2ff2e8b570803b98a5b82a8fe2 190 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 35 135 1.5E-6 T 23-04-2016 NIDE_RS18500 48428b2ff2e8b570803b98a5b82a8fe2 190 Gene3D G3DSA:3.10.180.10 34 184 2.6E-13 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS18500 48428b2ff2e8b570803b98a5b82a8fe2 190 SUPERFAMILY SSF54593 34 186 7.73E-14 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS12235 a2f3574fb5eb6979ce6756575d6cf668 258 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 20 223 1.5E-77 T 23-04-2016 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5508|MetaCyc: PWY-5523 NIDE_RS12235 a2f3574fb5eb6979ce6756575d6cf668 258 PANTHER PTHR21712 1 229 2.2E-36 T 23-04-2016 NIDE_RS12235 a2f3574fb5eb6979ce6756575d6cf668 258 PANTHER PTHR21712:SF31 1 229 2.2E-36 T 23-04-2016 NIDE_RS12235 a2f3574fb5eb6979ce6756575d6cf668 258 SUPERFAMILY SSF55469 28 233 3.4E-47 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS12235 a2f3574fb5eb6979ce6756575d6cf668 258 Gene3D G3DSA:3.40.109.10 21 232 2.0E-47 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 NIDE_RS12235 a2f3574fb5eb6979ce6756575d6cf668 258 Pfam PF00881 Nitroreductase family 32 199 4.9E-27 T 23-04-2016 IPR029479 Nitroreductase NIDE_RS05435 d14e0c8e1c7bd2d79c425a1821595961 124 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 8 112 6.5E-9 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NIDE_RS03235 c0d25b9e3e4f5cceea8bff8c55309ff0 410 SUPERFAMILY SSF110296 72 282 2.28E-34 T 23-04-2016 NIDE_RS03235 c0d25b9e3e4f5cceea8bff8c55309ff0 410 SUPERFAMILY SSF110296 241 409 2.88E-35 T 23-04-2016 NIDE_RS03235 c0d25b9e3e4f5cceea8bff8c55309ff0 410 Gene3D G3DSA:2.130.10.10 83 409 1.1E-69 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS12045 6b3c0533e148e44962ff506f10875ba2 113 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 20 104 1.9E-14 T 23-04-2016 IPR009241 Toxin HigB-like NIDE_RS07020 860972707ff0f01b34cb07001dec5dfa 436 SUPERFAMILY SSF51905 1 300 2.0E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS07020 860972707ff0f01b34cb07001dec5dfa 436 SUPERFAMILY SSF51905 392 431 2.0E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS07020 860972707ff0f01b34cb07001dec5dfa 436 PANTHER PTHR10742 2 431 9.7E-37 T 23-04-2016 NIDE_RS07020 860972707ff0f01b34cb07001dec5dfa 436 Pfam PF01593 Flavin containing amine oxidoreductase 12 430 4.0E-30 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 NIDE_RS07020 860972707ff0f01b34cb07001dec5dfa 436 Gene3D G3DSA:3.50.50.60 194 268 4.5E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS07020 860972707ff0f01b34cb07001dec5dfa 436 Gene3D G3DSA:3.50.50.60 3 91 4.5E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS07020 860972707ff0f01b34cb07001dec5dfa 436 Gene3D G3DSA:3.50.50.60 371 429 4.5E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 NIDE_RS20300 834ae57d49c6ded568eea973468ea1de 251 SUPERFAMILY SSF109604 36 211 4.19E-23 T 23-04-2016 NIDE_RS20300 834ae57d49c6ded568eea973468ea1de 251 Pfam PF13487 HD domain 113 170 7.2E-19 T 23-04-2016 NIDE_RS20300 834ae57d49c6ded568eea973468ea1de 251 SMART SM00471 53 188 2.4E-4 T 23-04-2016 IPR003607 HD/PDEase domain NIDE_RS20300 834ae57d49c6ded568eea973468ea1de 251 Gene3D G3DSA:1.10.3210.10 49 209 1.8E-15 T 23-04-2016 IPR006674 HD domain NIDE_RS17885 e7480bfc975f6b88cda49f0b750c4b1c 145 Pfam PF09990 Predicted membrane protein (DUF2231) 37 140 1.5E-9 T 23-04-2016 IPR019251 Domain of unknown function DUF2231, transmembrane NIDE_RS15525 3cd97e8261ca77726b0a426c15c930d6 66 Gene3D G3DSA:3.10.20.30 6 64 2.5E-15 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS15525 3cd97e8261ca77726b0a426c15c930d6 66 Pfam PF02597 ThiS family 10 64 1.2E-4 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 NIDE_RS15525 3cd97e8261ca77726b0a426c15c930d6 66 SUPERFAMILY SSF54285 3 64 1.13E-10 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NIDE_RS12815 79590b8d8acce184323d513a4207a5dc 391 SUPERFAMILY SSF75011 108 378 1.22E-19 T 23-04-2016 NIDE_RS12815 79590b8d8acce184323d513a4207a5dc 391 Gene3D G3DSA:2.130.10.10 56 379 4.5E-19 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS02615 0bb5fe353543a8ce8f1b98eb923a8556 224 PANTHER PTHR10108 1 220 9.3E-73 T 23-04-2016 NIDE_RS02615 0bb5fe353543a8ce8f1b98eb923a8556 224 Pfam PF01209 ubiE/COQ5 methyltransferase family 2 224 7.0E-65 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 NIDE_RS02615 0bb5fe353543a8ce8f1b98eb923a8556 224 Gene3D G3DSA:3.40.50.150 2 218 5.2E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02615 0bb5fe353543a8ce8f1b98eb923a8556 224 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 1 224 30.996 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 NIDE_RS02615 0bb5fe353543a8ce8f1b98eb923a8556 224 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 1 224 3.7E-66 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 NIDE_RS02615 0bb5fe353543a8ce8f1b98eb923a8556 224 PANTHER PTHR10108:SF864 1 220 9.3E-73 T 23-04-2016 NIDE_RS02615 0bb5fe353543a8ce8f1b98eb923a8556 224 SUPERFAMILY SSF53335 1 216 7.37E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS02615 0bb5fe353543a8ce8f1b98eb923a8556 224 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 131 145 - T 23-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 NIDE_RS11545 5230fc93a9c9af5784d30f6bac5fdb48 146 ProDom PD012969 UPF0211 RIKEN CDNA ENRICHED MALE FULL-LENGTH LIBRARY ZBTB8OS ADULT C43H8.1 14 145 2.0E-13 T 23-04-2016 IPR023572 Archease domain NIDE_RS11545 5230fc93a9c9af5784d30f6bac5fdb48 146 PANTHER PTHR12682 14 146 5.5E-18 T 23-04-2016 IPR002804 Archease NIDE_RS11545 5230fc93a9c9af5784d30f6bac5fdb48 146 SUPERFAMILY SSF69819 5 146 1.29E-23 T 23-04-2016 IPR023572 Archease domain NIDE_RS11545 5230fc93a9c9af5784d30f6bac5fdb48 146 PANTHER PTHR12682:SF10 14 146 5.5E-18 T 23-04-2016 NIDE_RS11545 5230fc93a9c9af5784d30f6bac5fdb48 146 Pfam PF01951 Archease protein family (MTH1598/TM1083) 6 146 3.2E-28 T 23-04-2016 IPR023572 Archease domain NIDE_RS11545 5230fc93a9c9af5784d30f6bac5fdb48 146 Gene3D G3DSA:3.55.10.10 4 146 1.5E-28 T 23-04-2016 IPR023572 Archease domain NIDE_RS02390 551ebb49919998dedebe7342f53c1e0d 323 Pfam PF00005 ABC transporter 23 165 4.7E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS02390 551ebb49919998dedebe7342f53c1e0d 323 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS02390 551ebb49919998dedebe7342f53c1e0d 323 PANTHER PTHR24220:SF429 278 317 3.3E-112 T 23-04-2016 NIDE_RS02390 551ebb49919998dedebe7342f53c1e0d 323 PANTHER PTHR24220:SF429 8 243 3.3E-112 T 23-04-2016 NIDE_RS02390 551ebb49919998dedebe7342f53c1e0d 323 SUPERFAMILY SSF52540 6 226 3.3E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02390 551ebb49919998dedebe7342f53c1e0d 323 PANTHER PTHR24220 278 317 3.3E-112 T 23-04-2016 NIDE_RS02390 551ebb49919998dedebe7342f53c1e0d 323 PANTHER PTHR24220 8 243 3.3E-112 T 23-04-2016 NIDE_RS02390 551ebb49919998dedebe7342f53c1e0d 323 Gene3D G3DSA:3.40.50.300 3 226 7.9E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS02390 551ebb49919998dedebe7342f53c1e0d 323 SMART SM00382 31 222 1.1E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS02390 551ebb49919998dedebe7342f53c1e0d 323 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 14 310 2.2E-101 T 23-04-2016 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 KEGG: 00920+3.6.3.- NIDE_RS16770 d36fb37a31bfc5938939e3a29eaa57ef 254 Pfam PF04555 Restriction endonuclease XhoI 24 223 1.4E-69 T 23-04-2016 IPR007636 Restriction endonuclease, type II, XhoI GO:0003677|GO:0009036|GO:0009307 NIDE_RS07710 ec41df877c6ef0552ef56fe9fb4def3d 274 PANTHER PTHR11735:SF11 9 134 1.6E-32 T 23-04-2016 NIDE_RS07710 ec41df877c6ef0552ef56fe9fb4def3d 274 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 9 227 8.8E-51 T 23-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 NIDE_RS07710 ec41df877c6ef0552ef56fe9fb4def3d 274 Pfam PF00814 Glycoprotease family 36 155 4.3E-23 T 23-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 NIDE_RS07710 ec41df877c6ef0552ef56fe9fb4def3d 274 SUPERFAMILY SSF53067 9 111 1.87E-24 T 23-04-2016 NIDE_RS07710 ec41df877c6ef0552ef56fe9fb4def3d 274 Gene3D G3DSA:3.30.420.40 9 135 1.1E-35 T 23-04-2016 NIDE_RS07710 ec41df877c6ef0552ef56fe9fb4def3d 274 PANTHER PTHR11735 9 134 1.6E-32 T 23-04-2016 NIDE_RS07710 ec41df877c6ef0552ef56fe9fb4def3d 274 SUPERFAMILY SSF53067 114 223 8.42E-10 T 23-04-2016 NIDE_RS14615 3bc97ff134b5b66f369c6a3183f80eb3 446 Gene3D G3DSA:1.20.1250.20 236 416 1.2E-19 T 23-04-2016 NIDE_RS14615 3bc97ff134b5b66f369c6a3183f80eb3 446 Gene3D G3DSA:1.20.1250.20 25 209 1.4E-17 T 23-04-2016 NIDE_RS14615 3bc97ff134b5b66f369c6a3183f80eb3 446 Pfam PF05977 Transmembrane secretion effector 22 417 2.1E-33 T 23-04-2016 IPR010290 Transmembrane secretion effector NIDE_RS14615 3bc97ff134b5b66f369c6a3183f80eb3 446 PRINTS PR01988 Putative bacilysin exporter bacE signature 29 51 8.7E-7 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS14615 3bc97ff134b5b66f369c6a3183f80eb3 446 PRINTS PR01988 Putative bacilysin exporter bacE signature 158 179 8.7E-7 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS14615 3bc97ff134b5b66f369c6a3183f80eb3 446 PRINTS PR01988 Putative bacilysin exporter bacE signature 318 341 8.7E-7 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS14615 3bc97ff134b5b66f369c6a3183f80eb3 446 PRINTS PR01988 Putative bacilysin exporter bacE signature 92 110 8.7E-7 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS14615 3bc97ff134b5b66f369c6a3183f80eb3 446 PRINTS PR01988 Putative bacilysin exporter bacE signature 185 202 8.7E-7 T 23-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 NIDE_RS14615 3bc97ff134b5b66f369c6a3183f80eb3 446 PANTHER PTHR23513 7 444 3.6E-79 T 23-04-2016 NIDE_RS14615 3bc97ff134b5b66f369c6a3183f80eb3 446 SUPERFAMILY SSF103473 25 419 3.27E-43 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS16190 2ef3ca130743bcbab1e84342e59003d5 146 Pfam PF00072 Response regulator receiver domain 20 133 1.8E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS16190 2ef3ca130743bcbab1e84342e59003d5 146 PANTHER PTHR26402 18 142 2.7E-33 T 23-04-2016 NIDE_RS16190 2ef3ca130743bcbab1e84342e59003d5 146 Gene3D G3DSA:3.40.50.2300 19 141 1.0E-34 T 23-04-2016 NIDE_RS16190 2ef3ca130743bcbab1e84342e59003d5 146 SUPERFAMILY SSF52172 19 141 1.04E-34 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS16190 2ef3ca130743bcbab1e84342e59003d5 146 SMART SM00448 18 133 2.4E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS15315 9db11a87f1e99a8f3c490699cd3036c7 150 Gene3D G3DSA:1.10.760.10 43 147 1.9E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15315 9db11a87f1e99a8f3c490699cd3036c7 150 SUPERFAMILY SSF46626 9 144 1.81E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS15315 9db11a87f1e99a8f3c490699cd3036c7 150 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 56 140 1.4E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17175 0279540e5350446673fc0e880273e71f 150 Gene3D G3DSA:2.30.130.30 4 110 2.6E-9 T 23-04-2016 NIDE_RS17175 0279540e5350446673fc0e880273e71f 150 SUPERFAMILY SSF88697 4 117 2.07E-15 T 23-04-2016 IPR015947 PUA-like domain NIDE_RS03625 9d13e56bbd5bf51a5b303e36d56bac6f 130 Gene3D G3DSA:2.40.50.140 2 121 7.1E-44 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS03625 9d13e56bbd5bf51a5b303e36d56bac6f 130 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 118 3.1E-44 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 NIDE_RS03625 9d13e56bbd5bf51a5b303e36d56bac6f 130 PANTHER PTHR10302 4 124 1.5E-37 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 NIDE_RS03625 9d13e56bbd5bf51a5b303e36d56bac6f 130 Pfam PF00436 Single-strand binding protein family 4 106 1.0E-36 T 23-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 NIDE_RS03625 9d13e56bbd5bf51a5b303e36d56bac6f 130 SUPERFAMILY SSF50249 3 118 3.77E-45 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold NIDE_RS03625 9d13e56bbd5bf51a5b303e36d56bac6f 130 PIRSF PIRSF002070 2 129 7.1E-35 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 NIDE_RS03625 9d13e56bbd5bf51a5b303e36d56bac6f 130 Hamap MF_00984 Single-stranded DNA-binding protein. 4 110 33.668 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 NIDE_RS07340 ef3998eefa6120e028b21a895ac37cc4 136 SUPERFAMILY SSF50891 9 130 1.97E-25 T 23-04-2016 IPR029000 Cyclophilin-like domain NIDE_RS07340 ef3998eefa6120e028b21a895ac37cc4 136 Pfam PF04126 Cyclophilin-like 8 127 1.1E-35 T 23-04-2016 IPR025658 Cyclophilin TM1367-like domain NIDE_RS07345 0388ad5e05c3a84df7edd41843b27db9 93 Pfam PF04368 Protein of unknown function (DUF507) 1 93 2.5E-18 T 23-04-2016 IPR007463 Protein of unknown function DUF507 NIDE_RS19330 9e9a6a93bd3772f60872ad153aaf17cf 214 PANTHER PTHR10108:SF750 35 168 2.7E-24 T 23-04-2016 NIDE_RS19330 9e9a6a93bd3772f60872ad153aaf17cf 214 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 121 135 - T 23-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 NIDE_RS19330 9e9a6a93bd3772f60872ad153aaf17cf 214 SUPERFAMILY SSF53335 19 192 9.31E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS19330 9e9a6a93bd3772f60872ad153aaf17cf 214 Pfam PF13489 Methyltransferase domain 28 178 1.5E-19 T 23-04-2016 NIDE_RS19330 9e9a6a93bd3772f60872ad153aaf17cf 214 PANTHER PTHR10108 35 168 2.7E-24 T 23-04-2016 NIDE_RS19330 9e9a6a93bd3772f60872ad153aaf17cf 214 Gene3D G3DSA:3.40.50.150 33 183 2.9E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS18425 0f5652091ee00d438c337ff9a8e34ee3 142 PANTHER PTHR33746 1 141 7.8E-58 T 23-04-2016 NIDE_RS18425 0f5652091ee00d438c337ff9a8e34ee3 142 PANTHER PTHR33746:SF3 1 141 7.8E-58 T 23-04-2016 NIDE_RS18425 0f5652091ee00d438c337ff9a8e34ee3 142 Gene3D G3DSA:1.20.1260.10 4 141 3.3E-51 T 23-04-2016 IPR012347 Ferritin-related NIDE_RS18425 0f5652091ee00d438c337ff9a8e34ee3 142 Pfam PF02915 Rubrerythrin 12 134 2.4E-28 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 NIDE_RS18425 0f5652091ee00d438c337ff9a8e34ee3 142 SUPERFAMILY SSF47240 5 141 7.14E-41 T 23-04-2016 IPR009078 Ferritin-like superfamily NIDE_RS06650 39501ca1c1dc23152ce57f97f5f6728c 195 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 13 185 7.2E-52 T 23-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 NIDE_RS06650 39501ca1c1dc23152ce57f97f5f6728c 195 SUPERFAMILY SSF55120 3 190 3.84E-40 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS06650 39501ca1c1dc23152ce57f97f5f6728c 195 Pfam PF00849 RNA pseudouridylate synthase 38 154 1.3E-12 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS06650 39501ca1c1dc23152ce57f97f5f6728c 195 PANTHER PTHR21600 128 191 1.5E-77 T 23-04-2016 NIDE_RS06650 39501ca1c1dc23152ce57f97f5f6728c 195 PANTHER PTHR21600 5 110 1.5E-77 T 23-04-2016 NIDE_RS06650 39501ca1c1dc23152ce57f97f5f6728c 195 PANTHER PTHR21600:SF23 128 191 1.5E-77 T 23-04-2016 NIDE_RS06650 39501ca1c1dc23152ce57f97f5f6728c 195 PANTHER PTHR21600:SF23 5 110 1.5E-77 T 23-04-2016 NIDE_RS06650 39501ca1c1dc23152ce57f97f5f6728c 195 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 44 58 - T 23-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 NIDE_RS09970 27e432342678a98f581f8706fcb4e09c 410 Pfam PF03413 Peptidase propeptide and YPEB domain 283 345 9.4E-5 T 23-04-2016 IPR025711 PepSY domain NIDE_RS09970 27e432342678a98f581f8706fcb4e09c 410 PANTHER PTHR34219 34 408 9.2E-55 T 23-04-2016 NIDE_RS09970 27e432342678a98f581f8706fcb4e09c 410 Pfam PF03929 PepSY-associated TM region 45 400 8.0E-53 T 23-04-2016 IPR005625 PepSY-associated TM protein NIDE_RS07885 f479f04e295fd96ee6ea47c60b62370a 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 3 92 1.3E-24 T 23-04-2016 IPR007711 Toxin HigB-1 NIDE_RS07885 f479f04e295fd96ee6ea47c60b62370a 92 SUPERFAMILY SSF143011 1 92 6.87E-13 T 23-04-2016 NIDE_RS07885 f479f04e295fd96ee6ea47c60b62370a 92 PANTHER PTHR40266:SF2 1 92 1.1E-17 T 23-04-2016 NIDE_RS07885 f479f04e295fd96ee6ea47c60b62370a 92 PANTHER PTHR40266 1 92 1.1E-17 T 23-04-2016 NIDE_RS00675 92bd51165690bb1accff10ca4033ed8e 598 PANTHER PTHR31616:SF0 8 589 7.5E-97 T 23-04-2016 NIDE_RS00675 92bd51165690bb1accff10ca4033ed8e 598 Pfam PF00723 Glycosyl hydrolases family 15 221 499 4.7E-24 T 23-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 NIDE_RS00675 92bd51165690bb1accff10ca4033ed8e 598 PANTHER PTHR31616 8 589 7.5E-97 T 23-04-2016 NIDE_RS00675 92bd51165690bb1accff10ca4033ed8e 598 Gene3D G3DSA:1.50.10.10 220 592 5.2E-58 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 NIDE_RS00675 92bd51165690bb1accff10ca4033ed8e 598 SUPERFAMILY SSF48208 205 595 2.35E-69 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 NIDE_RS09710 382debb6593ecf34fab393495a59178d 153 SMART SM00116 10 58 1.7E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS09710 382debb6593ecf34fab393495a59178d 153 SMART SM00116 96 143 6.4E-6 T 23-04-2016 IPR000644 CBS domain NIDE_RS09710 382debb6593ecf34fab393495a59178d 153 PANTHER PTHR11911 1 138 1.4E-26 T 23-04-2016 NIDE_RS09710 382debb6593ecf34fab393495a59178d 153 SUPERFAMILY SSF54631 1 140 2.15E-31 T 23-04-2016 NIDE_RS09710 382debb6593ecf34fab393495a59178d 153 Gene3D G3DSA:3.10.580.10 1 141 1.1E-29 T 23-04-2016 NIDE_RS09710 382debb6593ecf34fab393495a59178d 153 Pfam PF00571 CBS domain 90 138 2.0E-11 T 23-04-2016 IPR000644 CBS domain NIDE_RS09710 382debb6593ecf34fab393495a59178d 153 Pfam PF00571 CBS domain 3 54 3.2E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS15150 a998109743c119bad6d89b82c2dd5c7e 515 TIGRFAM TIGR04267 mod_HExxH: HEXXH motif domain 101 473 2.1E-83 T 23-04-2016 IPR026337 HEXXH motif domain NIDE_RS20380 34510dd507efbc4888b615ac592eafce 181 PANTHER PTHR10681 28 154 3.1E-19 T 23-04-2016 NIDE_RS20380 34510dd507efbc4888b615ac592eafce 181 Gene3D G3DSA:3.40.30.10 4 172 1.1E-29 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS20380 34510dd507efbc4888b615ac592eafce 181 Pfam PF00578 AhpC/TSA family 29 148 2.0E-19 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS20380 34510dd507efbc4888b615ac592eafce 181 SUPERFAMILY SSF52833 27 170 8.59E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS17430 abb7fd8cffd1c7d7cf0e712f435c773c 153 Pfam PF01161 Phosphatidylethanolamine-binding protein 16 151 1.7E-39 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein NIDE_RS17430 abb7fd8cffd1c7d7cf0e712f435c773c 153 SUPERFAMILY SSF49777 3 151 1.16E-50 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein NIDE_RS17430 abb7fd8cffd1c7d7cf0e712f435c773c 153 Gene3D G3DSA:3.90.280.10 3 152 1.4E-56 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein NIDE_RS17430 abb7fd8cffd1c7d7cf0e712f435c773c 153 PANTHER PTHR30289 9 153 1.7E-56 T 23-04-2016 NIDE_RS17430 abb7fd8cffd1c7d7cf0e712f435c773c 153 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 19 148 7.3E-42 T 23-04-2016 IPR005247 YbhB/YbcL NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 PANTHER PTHR32071 1 465 1.2E-166 T 23-04-2016 NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 Pfam PF00158 Sigma-54 interaction domain 144 310 6.3E-62 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 Gene3D G3DSA:3.40.50.300 141 316 5.0E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 Gene3D G3DSA:1.10.10.60 425 463 2.8E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 SMART SM00448 3 114 4.1E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 SUPERFAMILY SSF52540 154 385 1.16E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 Pfam PF00072 Response regulator receiver domain 6 114 2.8E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 Gene3D G3DSA:3.40.50.2300 4 127 6.9E-34 T 23-04-2016 NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 SUPERFAMILY SSF46689 358 463 1.88E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 SUPERFAMILY SSF52172 4 188 1.38E-41 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 Pfam PF02954 Bacterial regulatory protein, Fis family 426 465 5.5E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 SMART SM00382 164 307 1.4E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS08145 39a9c324f9ab318b5f253cdb64dadac2 468 Gene3D G3DSA:1.10.8.60 317 393 6.6E-22 T 23-04-2016 NIDE_RS05010 9187c2858e9c5da62bab9e4f52b4eccd 143 SUPERFAMILY SSF103084 6 125 6.15E-15 T 23-04-2016 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 NIDE_RS05010 9187c2858e9c5da62bab9e4f52b4eccd 143 Gene3D G3DSA:3.30.1330.70 5 125 8.2E-24 T 23-04-2016 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 NIDE_RS05010 9187c2858e9c5da62bab9e4f52b4eccd 143 Pfam PF05866 Endodeoxyribonuclease RusA 11 124 9.6E-12 T 23-04-2016 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 NIDE_RS12315 6a1aed6958e36cf09f54ff1a301e21ec 159 Gene3D G3DSA:2.30.110.10 5 152 1.5E-33 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS12315 6a1aed6958e36cf09f54ff1a301e21ec 159 PANTHER PTHR30466 1 152 1.5E-23 T 23-04-2016 NIDE_RS12315 6a1aed6958e36cf09f54ff1a301e21ec 159 SUPERFAMILY SSF50475 7 155 5.4E-34 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS12315 6a1aed6958e36cf09f54ff1a301e21ec 159 SMART SM00903 10 157 8.1E-31 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 NIDE_RS12315 6a1aed6958e36cf09f54ff1a301e21ec 159 Pfam PF01613 Flavin reductase like domain 11 151 5.4E-25 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 NIDE_RS16320 fb9346fe73faaa6367e2a918ff4bee85 381 SUPERFAMILY SSF53187 13 290 5.19E-40 T 23-04-2016 NIDE_RS16320 fb9346fe73faaa6367e2a918ff4bee85 381 PANTHER PTHR12147 15 280 8.8E-26 T 23-04-2016 NIDE_RS16320 fb9346fe73faaa6367e2a918ff4bee85 381 Gene3D G3DSA:3.40.630.10 12 290 4.4E-40 T 23-04-2016 NIDE_RS16320 fb9346fe73faaa6367e2a918ff4bee85 381 Pfam PF04389 Peptidase family M28 77 285 1.7E-26 T 23-04-2016 IPR007484 Peptidase M28 NIDE_RS02780 8d6bab5e4604ebdfc7d264d8576b5043 283 PANTHER PTHR30213 1 277 9.4E-32 T 23-04-2016 NIDE_RS02780 8d6bab5e4604ebdfc7d264d8576b5043 283 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 5 268 4.7E-25 T 23-04-2016 IPR017039 Virulence factor BrkB NIDE_RS02780 8d6bab5e4604ebdfc7d264d8576b5043 283 Pfam PF03631 Virulence factor BrkB 16 268 1.2E-42 T 23-04-2016 IPR017039 Virulence factor BrkB NIDE_RS02780 8d6bab5e4604ebdfc7d264d8576b5043 283 PIRSF PIRSF035875 3 280 1.2E-41 T 23-04-2016 IPR017039 Virulence factor BrkB NIDE_RS01715 9073102ac3b44166e1b3f505061126e0 140 PANTHER PTHR13822 1 136 1.3E-33 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01715 9073102ac3b44166e1b3f505061126e0 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 130 20.052 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01715 9073102ac3b44166e1b3f505061126e0 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 7 82 2.2E-26 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01715 9073102ac3b44166e1b3f505061126e0 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 89 2.0E-18 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01715 9073102ac3b44166e1b3f505061126e0 140 Gene3D G3DSA:2.60.15.10 4 90 5.9E-28 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01715 9073102ac3b44166e1b3f505061126e0 140 SUPERFAMILY SSF51344 5 84 2.35E-21 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS01715 9073102ac3b44166e1b3f505061126e0 140 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 87 130 4.9E-9 T 23-04-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain NIDE_RS01715 9073102ac3b44166e1b3f505061126e0 140 Gene3D G3DSA:1.20.5.440 91 131 2.2E-6 T 23-04-2016 NIDE_RS01715 9073102ac3b44166e1b3f505061126e0 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 6 127 5.1E-33 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 NIDE_RS19935 e4054cb7fd6a0202c2aab38ef57c2c07 264 Pfam PF06966 Protein of unknown function (DUF1295) 22 253 2.6E-61 T 23-04-2016 IPR010721 Protein of unknown function DUF1295 NIDE_RS19935 e4054cb7fd6a0202c2aab38ef57c2c07 264 PANTHER PTHR32251 6 264 4.0E-54 T 23-04-2016 NIDE_RS19980 1e7c3c67187f313b5d45e1d835611a1d 237 SUPERFAMILY SSF53474 20 234 8.24E-42 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS19980 1e7c3c67187f313b5d45e1d835611a1d 237 Gene3D G3DSA:3.40.50.1820 21 234 1.2E-40 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS19980 1e7c3c67187f313b5d45e1d835611a1d 237 PANTHER PTHR10655 24 232 3.1E-46 T 23-04-2016 NIDE_RS19980 1e7c3c67187f313b5d45e1d835611a1d 237 Pfam PF02230 Phospholipase/Carboxylesterase 26 233 1.8E-28 T 23-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 NIDE_RS19980 1e7c3c67187f313b5d45e1d835611a1d 237 PANTHER PTHR10655:SF17 24 232 3.1E-46 T 23-04-2016 NIDE_RS17895 4a70013778a442bff040e4cafe68c0e7 233 Pfam PF05227 CHASE3 domain 40 175 1.6E-31 T 23-04-2016 IPR007891 CHASE3 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 SMART SM00028 120 153 0.13 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 SMART SM00028 154 195 23.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 SMART SM00028 44 77 0.23 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 SMART SM00028 230 263 130.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 SMART SM00028 86 119 0.082 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 Pfam PF13432 Tetratricopeptide repeat 184 230 2.9E-4 T 23-04-2016 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 Pfam PF13432 Tetratricopeptide repeat 125 166 2.2E-4 T 23-04-2016 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 PANTHER PTHR23083 27 256 8.2E-37 T 23-04-2016 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 SUPERFAMILY SSF48452 33 169 1.31E-26 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 SUPERFAMILY SSF48452 180 255 2.62E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 Gene3D G3DSA:1.25.40.10 27 257 6.2E-45 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS14960 76c7e8eb14a30efa9aedb43e3a3a5a1a 270 Pfam PF13424 Tetratricopeptide repeat 47 115 2.9E-9 T 23-04-2016 NIDE_RS08635 396e1cd140b66e0ca39e80b99d6ad645 249 Pfam PF13505 Outer membrane protein beta-barrel domain 41 249 2.2E-12 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel NIDE_RS08635 396e1cd140b66e0ca39e80b99d6ad645 249 SUPERFAMILY SSF56925 50 249 2.25E-14 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS08635 396e1cd140b66e0ca39e80b99d6ad645 249 Gene3D G3DSA:2.40.160.20 49 249 6.0E-13 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 Gene3D G3DSA:3.40.50.620 158 303 5.2E-34 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 PANTHER PTHR31964:SF26 1 162 5.4E-25 T 23-04-2016 NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 SUPERFAMILY SSF52402 6 143 3.42E-30 T 23-04-2016 NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 Gene3D G3DSA:3.40.50.620 6 143 6.1E-32 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 PANTHER PTHR31964 1 162 5.4E-25 T 23-04-2016 NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 Pfam PF00582 Universal stress protein family 7 143 2.3E-26 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 Pfam PF00582 Universal stress protein family 161 299 1.7E-24 T 23-04-2016 IPR006016 UspA GO:0006950 NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 PRINTS PR01438 Universal stress protein signature 277 299 4.0E-13 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 PRINTS PR01438 Universal stress protein signature 161 179 4.0E-13 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 PRINTS PR01438 Universal stress protein signature 259 271 4.0E-13 T 23-04-2016 IPR006015 Universal stress protein A NIDE_RS17765 d18577fe341718ab693b68848e1c61e7 325 SUPERFAMILY SSF52402 161 302 3.43E-32 T 23-04-2016 NIDE_RS03255 5bd29ae9fbc03ea54ef68663892c1254 95 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 90 1.6E-15 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NIDE_RS03255 5bd29ae9fbc03ea54ef68663892c1254 95 PANTHER PTHR33755 1 92 1.3E-22 T 23-04-2016 NIDE_RS03255 5bd29ae9fbc03ea54ef68663892c1254 95 PANTHER PTHR33755:SF5 1 92 1.3E-22 T 23-04-2016 NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 Pfam PF08544 GHMP kinases C terminal 242 324 1.2E-11 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 Gene3D G3DSA:3.30.230.10 3 176 4.7E-30 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 PRINTS PR00960 LmbP protein signature 148 167 2.7E-42 T 23-04-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 PRINTS PR00960 LmbP protein signature 285 304 2.7E-42 T 23-04-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 PRINTS PR00960 LmbP protein signature 7 22 2.7E-42 T 23-04-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 PRINTS PR00960 LmbP protein signature 106 127 2.7E-42 T 23-04-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 PRINTS PR00960 LmbP protein signature 257 281 2.7E-42 T 23-04-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 Gene3D G3DSA:3.30.70.890 196 335 2.7E-17 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 SUPERFAMILY SSF55060 188 331 9.12E-29 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 Pfam PF00288 GHMP kinases N terminal domain 101 168 4.2E-12 T 23-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 SUPERFAMILY SSF54211 3 187 4.71E-39 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 PANTHER PTHR32463 1 319 3.5E-74 T 23-04-2016 NIDE_RS15665 f2833ccbf40356bb3ff4f70eccc9dd93 342 PIRSF PIRSF036406 1 342 2.5E-140 T 23-04-2016 IPR014606 D,D-heptose 7-phosphate kinase KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478|UniPathway: UPA00543|UniPathway: UPA00977 NIDE_RS11750 33cb58bad8219ceac9b62af7746c660a 212 Gene3D G3DSA:3.30.70.1450 133 199 2.9E-7 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NIDE_RS11750 33cb58bad8219ceac9b62af7746c660a 212 SUPERFAMILY SSF116726 133 203 2.62E-11 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NIDE_RS11750 33cb58bad8219ceac9b62af7746c660a 212 Pfam PF02080 TrkA-C domain 137 198 2.7E-10 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NIDE_RS17075 eb843cd22a34f6568a2e204c77f5bf3e 494 Gene3D G3DSA:3.60.120.10 15 491 1.3E-162 T 23-04-2016 IPR005801 ADC synthase GO:0009058 NIDE_RS17075 eb843cd22a34f6568a2e204c77f5bf3e 494 PANTHER PTHR11236 7 492 1.6E-171 T 23-04-2016 NIDE_RS17075 eb843cd22a34f6568a2e204c77f5bf3e 494 Pfam PF00425 chorismate binding enzyme 219 482 3.5E-99 T 23-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal NIDE_RS17075 eb843cd22a34f6568a2e204c77f5bf3e 494 PRINTS PR00095 Anthranilate synthase component I signature 439 453 7.5E-22 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS17075 eb843cd22a34f6568a2e204c77f5bf3e 494 PRINTS PR00095 Anthranilate synthase component I signature 330 343 7.5E-22 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS17075 eb843cd22a34f6568a2e204c77f5bf3e 494 PRINTS PR00095 Anthranilate synthase component I signature 424 438 7.5E-22 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS17075 eb843cd22a34f6568a2e204c77f5bf3e 494 PRINTS PR00095 Anthranilate synthase component I signature 344 357 7.5E-22 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS17075 eb843cd22a34f6568a2e204c77f5bf3e 494 SUPERFAMILY SSF56322 14 491 2.35E-148 T 23-04-2016 IPR005801 ADC synthase GO:0009058 NIDE_RS17075 eb843cd22a34f6568a2e204c77f5bf3e 494 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 164 1.2E-32 T 23-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS12895 c046fa1c284c98ecb509fa80c08d2ae7 256 Pfam PF07087 Protein of unknown function (DUF1353) 141 245 7.8E-28 T 23-04-2016 IPR010767 Campylobacter phage CGC-2007, Cje0229 NIDE_RS16335 90d8c065ce414e0094b4c2d552c2538a 279 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 194 277 8.2E-33 T 23-04-2016 IPR013615 CbbQ/NirQ/NorQ, C-terminal NIDE_RS16335 90d8c065ce414e0094b4c2d552c2538a 279 SUPERFAMILY SSF52540 42 243 2.06E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS16335 90d8c065ce414e0094b4c2d552c2538a 279 PANTHER PTHR22908 26 273 1.9E-35 T 23-04-2016 NIDE_RS16335 90d8c065ce414e0094b4c2d552c2538a 279 Pfam PF07728 AAA domain (dynein-related subfamily) 47 181 2.3E-31 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 NIDE_RS16335 90d8c065ce414e0094b4c2d552c2538a 279 Gene3D G3DSA:3.40.50.300 41 195 1.2E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17215 3aeacd809ecc8f5f078529a55e5a2fd4 175 PANTHER PTHR11055 8 170 1.2E-32 T 23-04-2016 NIDE_RS17215 3aeacd809ecc8f5f078529a55e5a2fd4 175 SUPERFAMILY SSF52540 5 171 1.24E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17215 3aeacd809ecc8f5f078529a55e5a2fd4 175 Pfam PF01583 Adenylylsulphate kinase 5 154 9.0E-34 T 23-04-2016 NIDE_RS17215 3aeacd809ecc8f5f078529a55e5a2fd4 175 Gene3D G3DSA:3.40.50.300 4 171 1.2E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17215 3aeacd809ecc8f5f078529a55e5a2fd4 175 PANTHER PTHR11055:SF15 8 170 1.2E-32 T 23-04-2016 NIDE_RS02115 5f94246d646bafea7e2e63cf88cd9770 89 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 88 5.3E-24 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NIDE_RS02115 5f94246d646bafea7e2e63cf88cd9770 89 SUPERFAMILY SSF143011 3 88 4.9E-24 T 23-04-2016 NIDE_RS02115 5f94246d646bafea7e2e63cf88cd9770 89 PIRSF PIRSF006156 1 89 9.6E-32 T 23-04-2016 IPR004386 Toxin-antitoxin system, YafQ-like toxin NIDE_RS02115 5f94246d646bafea7e2e63cf88cd9770 89 Pfam PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ 3 89 1.4E-34 T 23-04-2016 IPR004386 Toxin-antitoxin system, YafQ-like toxin NIDE_RS02115 5f94246d646bafea7e2e63cf88cd9770 89 PANTHER PTHR40588 1 89 3.4E-25 T 23-04-2016 NIDE_RS04775 82ebf00e27e6a220560d68373a4d428a 534 PANTHER PTHR30183 16 530 1.0E-128 T 23-04-2016 NIDE_RS04775 82ebf00e27e6a220560d68373a4d428a 534 PANTHER PTHR30183:SF2 16 530 1.0E-128 T 23-04-2016 NIDE_RS04775 82ebf00e27e6a220560d68373a4d428a 534 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 348 517 1.5E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS04775 82ebf00e27e6a220560d68373a4d428a 534 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 70 256 3.0E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS04775 82ebf00e27e6a220560d68373a4d428a 534 SUPERFAMILY SSF161098 15 266 3.01E-47 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS04775 82ebf00e27e6a220560d68373a4d428a 534 SUPERFAMILY SSF161098 291 520 1.83E-39 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS04775 82ebf00e27e6a220560d68373a4d428a 534 Gene3D G3DSA:1.10.3720.10 18 266 1.3E-40 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS04775 82ebf00e27e6a220560d68373a4d428a 534 Gene3D G3DSA:1.10.3720.10 294 521 2.3E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 NIDE_RS12510 c3f845ec74c51a8c437c75735269e567 512 Gene3D G3DSA:1.25.40.10 56 114 1.6E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS12510 c3f845ec74c51a8c437c75735269e567 512 Pfam PF13432 Tetratricopeptide repeat 59 116 9.8E-9 T 23-04-2016 NIDE_RS12510 c3f845ec74c51a8c437c75735269e567 512 SUPERFAMILY SSF48452 56 118 5.7E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS01175 7feeefd764b4262871bf84cb62d04f13 41 Pfam PF02416 mttA/Hcf106 family 5 41 7.1E-13 T 23-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 NIDE_RS01175 7feeefd764b4262871bf84cb62d04f13 41 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 41 1.0E-15 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 NIDE_RS10125 6160015ef0849448c2d71185fd043e8d 391 Pfam PF01757 Acyltransferase family 14 318 7.5E-21 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 NIDE_RS00060 ed7bcf6979a7cbca21c3f465b6a821ef 149 SUPERFAMILY SSF54593 1 111 1.22E-17 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS00060 ed7bcf6979a7cbca21c3f465b6a821ef 149 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 109 1.3E-8 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIDE_RS00060 ed7bcf6979a7cbca21c3f465b6a821ef 149 Gene3D G3DSA:3.10.180.10 4 111 2.6E-18 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS00060 ed7bcf6979a7cbca21c3f465b6a821ef 149 ProSitePatterns PS00934 Glyoxalase I signature 1. 10 31 - T 23-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 NIDE_RS18490 986125fba83e1c7fca6369e6c96746be 168 Pfam PF06884 Protein of unknown function (DUF1264) 32 147 1.2E-15 T 23-04-2016 IPR010686 Protein of unknown function DUF1264 NIDE_RS14475 2e32ad184096581f04f6ab8519cb6955 101 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 2 77 2.1E-9 T 23-04-2016 IPR016772 Uncharacterised conserved protein UCP020408 NIDE_RS02760 93e9581db9e880d6385c3c5bb3f5d4ba 132 PANTHER PTHR21366 1 126 2.0E-17 T 23-04-2016 NIDE_RS02760 93e9581db9e880d6385c3c5bb3f5d4ba 132 SUPERFAMILY SSF54593 1 128 7.25E-27 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS02760 93e9581db9e880d6385c3c5bb3f5d4ba 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 122 1.8E-17 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIDE_RS02760 93e9581db9e880d6385c3c5bb3f5d4ba 132 Gene3D G3DSA:3.10.180.10 5 130 4.4E-29 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS17695 8d5d5cb94d847eb4d6c9c3296f6bb573 146 SUPERFAMILY SSF46626 38 145 2.06E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17695 8d5d5cb94d847eb4d6c9c3296f6bb573 146 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 55 141 2.3E-11 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17695 8d5d5cb94d847eb4d6c9c3296f6bb573 146 Gene3D G3DSA:1.10.760.10 43 145 6.7E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS19965 24d65c45214e3037955f2cfa8f4c5c93 240 PANTHER PTHR15629 66 215 1.6E-36 T 23-04-2016 NIDE_RS19965 24d65c45214e3037955f2cfa8f4c5c93 240 Pfam PF04366 Las17-binding protein actin regulator 114 234 5.6E-27 T 23-04-2016 IPR007461 Ysc84 actin-binding domain NIDE_RS09120 b3f77d0deea7d78edd8211bd9dd10597 325 Pfam PF00691 OmpA family 222 318 3.1E-20 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS09120 b3f77d0deea7d78edd8211bd9dd10597 325 PRINTS PR01021 OMPA domain signature 253 268 1.7E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS09120 b3f77d0deea7d78edd8211bd9dd10597 325 PRINTS PR01021 OMPA domain signature 268 284 1.7E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS09120 b3f77d0deea7d78edd8211bd9dd10597 325 PRINTS PR01021 OMPA domain signature 223 245 1.7E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 NIDE_RS09120 b3f77d0deea7d78edd8211bd9dd10597 325 SUPERFAMILY SSF103088 217 323 1.1E-32 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS09120 b3f77d0deea7d78edd8211bd9dd10597 325 PANTHER PTHR30128 191 323 1.3E-34 T 23-04-2016 NIDE_RS09120 b3f77d0deea7d78edd8211bd9dd10597 325 Gene3D G3DSA:3.30.1330.60 221 323 7.7E-34 T 23-04-2016 IPR006665 OmpA-like domain NIDE_RS20610 a38eb5aaade00166ca6e24a6579af652 322 Pfam PF13699 Domain of unknown function (DUF4157) 1 68 1.2E-21 T 23-04-2016 IPR025295 Domain of unknown function DUF4157 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PRINTS PR00145 Argininosuccinate lyase family signature 278 294 6.0E-65 T 23-04-2016 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PRINTS PR00145 Argininosuccinate lyase family signature 104 126 6.0E-65 T 23-04-2016 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PRINTS PR00145 Argininosuccinate lyase family signature 196 212 6.0E-65 T 23-04-2016 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PRINTS PR00145 Argininosuccinate lyase family signature 234 258 6.0E-65 T 23-04-2016 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PRINTS PR00145 Argininosuccinate lyase family signature 145 165 6.0E-65 T 23-04-2016 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PRINTS PR00145 Argininosuccinate lyase family signature 313 332 6.0E-65 T 23-04-2016 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 TIGRFAM TIGR00838 argH: argininosuccinate lyase 7 458 1.3E-185 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PANTHER PTHR11444 4 458 1.1E-229 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 Gene3D G3DSA:1.10.40.30 377 434 1.2E-24 T 23-04-2016 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 ProSitePatterns PS00163 Fumarate lyases signature. 278 287 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PRINTS PR00149 Fumarate lyase superfamily signature 105 123 1.4E-29 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PRINTS PR00149 Fumarate lyase superfamily signature 150 168 1.4E-29 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PRINTS PR00149 Fumarate lyase superfamily signature 278 294 1.4E-29 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PRINTS PR00149 Fumarate lyase superfamily signature 234 261 1.4E-29 T 23-04-2016 IPR000362 Fumarate lyase family NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 Gene3D G3DSA:1.10.275.10 5 109 3.0E-39 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 Pfam PF00206 Lyase 9 303 1.6E-79 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 Pfam PF14698 Argininosuccinate lyase C-terminal 367 433 6.0E-20 T 23-04-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 Gene3D G3DSA:1.20.200.10 110 376 6.8E-102 T 23-04-2016 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 Hamap MF_00006 Argininosuccinate lyase [argH]. 5 456 41.799 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 SUPERFAMILY SSF48557 7 458 1.57E-144 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 NIDE_RS02230 efb9866214a9445f9c0f0943b744496e 460 PANTHER PTHR11444:SF3 4 458 1.1E-229 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 NIDE_RS21130 030db6250115d0ab07a1ba6c716c31bb 377 Pfam PF01435 Peptidase family M48 177 346 1.4E-30 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 NIDE_RS21130 030db6250115d0ab07a1ba6c716c31bb 377 Gene3D G3DSA:3.30.2010.10 175 251 9.1E-18 T 23-04-2016 NIDE_RS21130 030db6250115d0ab07a1ba6c716c31bb 377 PANTHER PTHR22726 106 351 4.7E-51 T 23-04-2016 NIDE_RS07960 45554cdbee68752838d3e3bea6988b69 388 Gene3D G3DSA:3.40.50.2300 3 123 5.1E-17 T 23-04-2016 NIDE_RS07960 45554cdbee68752838d3e3bea6988b69 388 SMART SM00448 3 116 0.0026 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS07960 45554cdbee68752838d3e3bea6988b69 388 Pfam PF00072 Response regulator receiver domain 5 116 8.7E-9 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS07960 45554cdbee68752838d3e3bea6988b69 388 SUPERFAMILY SSF52172 2 123 1.02E-15 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS09680 3ee78b3c19799043b69d77586bed48cc 159 Pfam PF01478 Type IV leader peptidase family 2 98 3.4E-15 T 23-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 NIDE_RS04950 aec48d95bede2e8c529776cc61fd7b8f 72 Gene3D G3DSA:3.30.70.900 18 67 1.4E-5 T 23-04-2016 NIDE_RS04950 aec48d95bede2e8c529776cc61fd7b8f 72 SUPERFAMILY SSF54909 12 69 7.02E-7 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS04950 aec48d95bede2e8c529776cc61fd7b8f 72 Pfam PF03992 Antibiotic biosynthesis monooxygenase 15 67 5.1E-5 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain NIDE_RS13680 52003ea1c916e71852f81a86bcebd528 391 SUPERFAMILY SSF53756 123 387 2.93E-25 T 23-04-2016 NIDE_RS13680 52003ea1c916e71852f81a86bcebd528 391 SUPERFAMILY SSF53756 9 85 2.93E-25 T 23-04-2016 NIDE_RS13680 52003ea1c916e71852f81a86bcebd528 391 Pfam PF13692 Glycosyl transferases group 1 240 358 1.1E-11 T 23-04-2016 NIDE_RS06825 cff6a3ba1f320964b9d1a396ebbf0921 566 Pfam PF13372 Alginate export 121 557 4.0E-36 T 23-04-2016 IPR025388 Alginate export domain UniPathway: UPA00286 NIDE_RS14845 050e5c5da3d6c74268fcf92f7bacb06e 480 Pfam PF02321 Outer membrane efflux protein 93 278 7.1E-19 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS14845 050e5c5da3d6c74268fcf92f7bacb06e 480 Pfam PF02321 Outer membrane efflux protein 304 477 1.6E-21 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS14845 050e5c5da3d6c74268fcf92f7bacb06e 480 PANTHER PTHR30203 92 478 1.3E-46 T 23-04-2016 NIDE_RS14845 050e5c5da3d6c74268fcf92f7bacb06e 480 Gene3D G3DSA:1.20.1600.10 91 478 3.1E-57 T 23-04-2016 NIDE_RS14845 050e5c5da3d6c74268fcf92f7bacb06e 480 SUPERFAMILY SSF56954 59 478 2.49E-69 T 23-04-2016 NIDE_RS01475 51310568ccc5041bddbb7ca634530e43 123 SUPERFAMILY SSF54534 13 122 6.29E-47 T 23-04-2016 NIDE_RS01475 51310568ccc5041bddbb7ca634530e43 123 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 31 120 2.2E-38 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 NIDE_RS01475 51310568ccc5041bddbb7ca634530e43 123 Gene3D G3DSA:3.10.50.40 10 122 8.5E-52 T 23-04-2016 NIDE_RS01475 51310568ccc5041bddbb7ca634530e43 123 PANTHER PTHR10516 11 123 4.5E-63 T 23-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 Gene3D G3DSA:3.40.50.880 2 186 1.3E-65 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.1E-5 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 1.1E-5 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PANTHER PTHR11922:SF7 1 187 7.8E-98 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 SUPERFAMILY SSF52317 2 186 3.44E-55 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 Pfam PF00117 Glutamine amidotransferase class-I 4 185 5.4E-54 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.7E-36 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00097 Anthranilate synthase component II signature 164 177 1.7E-36 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.7E-36 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.7E-36 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.7E-36 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.7E-36 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 4.1E-13 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 4.1E-13 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 4.1E-13 T 23-04-2016 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 186 1.1E-84 T 23-04-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 NIDE_RS09325 94a4488244acae6d4929288a01a9f978 187 PANTHER PTHR11922 1 187 7.8E-98 T 23-04-2016 NIDE_RS14390 b6b8a0124ca7d0088243f77d94944053 514 Pfam PF02321 Outer membrane efflux protein 61 260 8.5E-20 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS14390 b6b8a0124ca7d0088243f77d94944053 514 Pfam PF02321 Outer membrane efflux protein 288 467 3.5E-6 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS14390 b6b8a0124ca7d0088243f77d94944053 514 PANTHER PTHR30203 58 488 3.8E-23 T 23-04-2016 NIDE_RS14390 b6b8a0124ca7d0088243f77d94944053 514 Gene3D G3DSA:1.20.1600.10 57 408 9.5E-37 T 23-04-2016 NIDE_RS14390 b6b8a0124ca7d0088243f77d94944053 514 SUPERFAMILY SSF56954 8 25 1.22E-49 T 23-04-2016 NIDE_RS14390 b6b8a0124ca7d0088243f77d94944053 514 SUPERFAMILY SSF56954 57 469 1.22E-49 T 23-04-2016 NIDE_RS05680 588a82f3b0603366cad989ea2ecd981c 215 PANTHER PTHR26402 1 128 4.7E-31 T 23-04-2016 NIDE_RS05680 588a82f3b0603366cad989ea2ecd981c 215 SMART SM00448 1 124 1.5E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05680 588a82f3b0603366cad989ea2ecd981c 215 Gene3D G3DSA:3.40.50.2300 3 132 2.0E-34 T 23-04-2016 NIDE_RS05680 588a82f3b0603366cad989ea2ecd981c 215 Pfam PF00072 Response regulator receiver domain 3 125 5.7E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS05680 588a82f3b0603366cad989ea2ecd981c 215 SUPERFAMILY SSF52172 2 151 1.57E-32 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS20230 76d452423dc0b895dbb012993154c43d 213 SUPERFAMILY SSF56925 30 213 6.02E-17 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS20230 76d452423dc0b895dbb012993154c43d 213 Pfam PF13505 Outer membrane protein beta-barrel domain 29 213 1.9E-13 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel NIDE_RS20230 76d452423dc0b895dbb012993154c43d 213 Gene3D G3DSA:2.40.160.20 21 213 6.4E-15 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 PIRSF PIRSF036482 3 419 1.1E-168 T 23-04-2016 IPR011403 Pyrophosphate-dependent phosphofructokinase TM0289 type GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042|UniPathway: UPA00109 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 Gene3D G3DSA:3.40.50.450 10 220 1.2E-50 T 23-04-2016 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 102 118 1.45E-21 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 132 149 1.45E-21 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 12 31 1.45E-21 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 172 188 1.45E-21 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 37 50 1.45E-21 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 190 207 1.45E-21 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 PANTHER PTHR13697 10 390 8.4E-99 T 23-04-2016 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 PANTHER PTHR13697:SF2 10 390 8.4E-99 T 23-04-2016 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 Pfam PF00365 Phosphofructokinase 10 329 1.2E-48 T 23-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 Hamap MF_01979 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 7 418 54.153 T 23-04-2016 IPR011403 Pyrophosphate-dependent phosphofructokinase TM0289 type GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042|UniPathway: UPA00109 NIDE_RS14570 e8e57a7a6c4a9f0b476e629598dc70d4 421 SUPERFAMILY SSF53784 10 390 8.5E-92 T 23-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 NIDE_RS14650 07fd04849fe63cf145b5f0596820c82b 339 PANTHER PTHR12553 228 323 3.0E-69 T 23-04-2016 NIDE_RS14650 07fd04849fe63cf145b5f0596820c82b 339 PANTHER PTHR12553 16 177 3.0E-69 T 23-04-2016 NIDE_RS14650 07fd04849fe63cf145b5f0596820c82b 339 PANTHER PTHR12553:SF50 228 323 3.0E-69 T 23-04-2016 NIDE_RS14650 07fd04849fe63cf145b5f0596820c82b 339 PANTHER PTHR12553:SF50 16 177 3.0E-69 T 23-04-2016 NIDE_RS14650 07fd04849fe63cf145b5f0596820c82b 339 SUPERFAMILY SSF56281 17 117 5.74E-39 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS14650 07fd04849fe63cf145b5f0596820c82b 339 SUPERFAMILY SSF56281 152 336 5.74E-39 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS14650 07fd04849fe63cf145b5f0596820c82b 339 Gene3D G3DSA:3.60.15.10 237 336 2.0E-45 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS14650 07fd04849fe63cf145b5f0596820c82b 339 Gene3D G3DSA:3.60.15.10 21 199 2.0E-45 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS16505 aac188851726505b5e27e60f37e8bec9 462 Pfam PF16116 Domain of unknown function (DUF4832) 300 437 1.5E-18 T 23-04-2016 IPR032267 Domain of unknown function DUF4832 NIDE_RS16505 aac188851726505b5e27e60f37e8bec9 462 Gene3D G3DSA:3.20.20.80 76 189 1.7E-12 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 NIDE_RS16505 aac188851726505b5e27e60f37e8bec9 462 SUPERFAMILY SSF51445 79 264 1.6E-11 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS16505 aac188851726505b5e27e60f37e8bec9 462 SUPERFAMILY SSF51445 321 351 1.6E-11 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS16505 aac188851726505b5e27e60f37e8bec9 462 Pfam PF02449 Beta-galactosidase 76 177 7.4E-8 T 23-04-2016 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 NIDE_RS06840 11f021ad6de7d959b1cefbd32e03933f 364 Pfam PF04138 GtrA-like protein 242 359 1.3E-19 T 23-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 NIDE_RS06840 11f021ad6de7d959b1cefbd32e03933f 364 PANTHER PTHR10859 4 293 2.3E-62 T 23-04-2016 NIDE_RS06840 11f021ad6de7d959b1cefbd32e03933f 364 PANTHER PTHR10859:SF37 4 293 2.3E-62 T 23-04-2016 NIDE_RS06840 11f021ad6de7d959b1cefbd32e03933f 364 Pfam PF00535 Glycosyl transferase family 2 7 173 1.1E-29 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS06840 11f021ad6de7d959b1cefbd32e03933f 364 SUPERFAMILY SSF53448 4 173 4.57E-36 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS06840 11f021ad6de7d959b1cefbd32e03933f 364 Gene3D G3DSA:3.90.550.10 4 173 1.2E-22 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS14495 9df538ba7fad9a021d132acd667cb566 210 PANTHER PTHR30212:SF3 9 149 2.6E-29 T 23-04-2016 NIDE_RS14495 9df538ba7fad9a021d132acd667cb566 210 PANTHER PTHR30212 9 149 2.6E-29 T 23-04-2016 NIDE_RS14495 9df538ba7fad9a021d132acd667cb566 210 SUPERFAMILY SSF50475 34 166 6.47E-13 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS14495 9df538ba7fad9a021d132acd667cb566 210 Gene3D G3DSA:2.30.110.10 32 164 3.4E-20 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 NIDE_RS14495 9df538ba7fad9a021d132acd667cb566 210 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 35 127 1.5E-10 T 23-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 NIDE_RS13895 c69a9400541dce3d077dc7d0e65fc316 451 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 31 215 4.9E-62 T 23-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 NIDE_RS13895 c69a9400541dce3d077dc7d0e65fc316 451 SUPERFAMILY SSF53756 57 427 1.0E-21 T 23-04-2016 NIDE_RS13895 c69a9400541dce3d077dc7d0e65fc316 451 Gene3D G3DSA:3.40.50.2000 216 408 2.5E-8 T 23-04-2016 NIDE_RS13895 c69a9400541dce3d077dc7d0e65fc316 451 PANTHER PTHR23417:SF2 194 441 1.8E-99 T 23-04-2016 NIDE_RS13895 c69a9400541dce3d077dc7d0e65fc316 451 PANTHER PTHR23417:SF2 1 113 1.8E-99 T 23-04-2016 NIDE_RS13895 c69a9400541dce3d077dc7d0e65fc316 451 PANTHER PTHR23417:SF2 132 142 1.8E-99 T 23-04-2016 NIDE_RS13895 c69a9400541dce3d077dc7d0e65fc316 451 PANTHER PTHR23417 194 441 1.8E-99 T 23-04-2016 NIDE_RS13895 c69a9400541dce3d077dc7d0e65fc316 451 PANTHER PTHR23417 1 113 1.8E-99 T 23-04-2016 NIDE_RS13895 c69a9400541dce3d077dc7d0e65fc316 451 PANTHER PTHR23417 132 142 1.8E-99 T 23-04-2016 NIDE_RS18695 071030bb38948c8efc157f716f922f8e 175 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 20 38 9.5E-5 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS00960 03f9d2f66b631b4fa39a0434ef437691 261 PANTHER PTHR33973 1 250 1.4E-78 T 23-04-2016 NIDE_RS00960 03f9d2f66b631b4fa39a0434ef437691 261 Pfam PF07103 Protein of unknown function (DUF1365) 6 248 2.4E-76 T 23-04-2016 IPR010775 Protein of unknown function DUF1365 NIDE_RS08075 6d94e2f274a137981634942ee4c4fe08 231 Pfam PF01988 VIT family 17 227 1.9E-69 T 23-04-2016 IPR008217 Ccc1 family NIDE_RS08075 6d94e2f274a137981634942ee4c4fe08 231 PANTHER PTHR31851:SF11 8 230 4.7E-101 T 23-04-2016 NIDE_RS08075 6d94e2f274a137981634942ee4c4fe08 231 PANTHER PTHR31851 8 230 4.7E-101 T 23-04-2016 NIDE_RS00630 c75b58008c006fdda7459b951cf0dac2 64 SUPERFAMILY SSF47598 4 51 2.16E-9 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 NIDE_RS00630 c75b58008c006fdda7459b951cf0dac2 64 Gene3D G3DSA:1.10.1220.10 4 46 5.5E-6 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 NIDE_RS00630 c75b58008c006fdda7459b951cf0dac2 64 Pfam PF01402 Ribbon-helix-helix protein, copG family 9 46 3.1E-5 T 23-04-2016 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 NIDE_RS11000 c10152c32393cf9b3d535d989f6865f1 482 SUPERFAMILY SSF48230 26 207 3.75E-18 T 23-04-2016 IPR008929 Chondroitin AC/alginate lyase NIDE_RS11000 c10152c32393cf9b3d535d989f6865f1 482 PANTHER PTHR39210 26 468 5.8E-37 T 23-04-2016 NIDE_RS11000 c10152c32393cf9b3d535d989f6865f1 482 Pfam PF07940 Heparinase II/III-like protein 239 457 4.4E-57 T 23-04-2016 IPR012480 Heparinase II/III-like MetaCyc: PWY-7651 NIDE_RS11000 c10152c32393cf9b3d535d989f6865f1 482 Pfam PF16889 Heparinase II/III N-terminus 29 203 3.6E-18 T 23-04-2016 IPR031680 Heparin-sulfate lyase, N-terminal MetaCyc: PWY-7651 NIDE_RS11000 c10152c32393cf9b3d535d989f6865f1 482 Gene3D G3DSA:1.50.10.110 70 208 7.0E-6 T 23-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 NIDE_RS07285 da082b8eb839c9e1132ccd16be91474b 177 Gene3D G3DSA:1.25.40.10 32 93 2.3E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS13900 ad5b46552340649d93994be3d14bca91 220 Pfam PF04028 Domain of unknown function (DUF374) 81 145 4.4E-27 T 23-04-2016 IPR007172 Domain of unknown function DUF374 NIDE_RS13900 ad5b46552340649d93994be3d14bca91 220 ProDom PD032436 LIPOPROTEIN UNCHARACTERIZED PROBABLE CJ0457C SIMILAR TRANSFERASE BACTERIA PRECURSOR SIGNAL CC0304 60 146 3.0E-16 T 23-04-2016 IPR007172 Domain of unknown function DUF374 NIDE_RS17070 b0aa2781d2f19525e5e898aecde1dc81 94 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 34 87 6.1E-15 T 23-04-2016 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.5E-22 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 Pfam PF03466 LysR substrate binding domain 88 291 2.8E-49 T 23-04-2016 IPR005119 LysR, substrate-binding NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 Gene3D G3DSA:1.10.10.10 1 84 1.8E-30 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 Gene3D G3DSA:3.40.190.10 180 263 7.6E-21 T 23-04-2016 NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 SUPERFAMILY SSF46785 1 84 3.63E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 PANTHER PTHR30346:SF3 1 307 2.0E-86 T 23-04-2016 NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 SUPERFAMILY SSF53850 90 297 4.42E-48 T 23-04-2016 NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 PANTHER PTHR30346 1 307 2.0E-86 T 23-04-2016 NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.5E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.5E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.5E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 NIDE_RS02020 8e75619349e31652945406b56c78a41e 315 Gene3D G3DSA:3.40.190.10 89 179 9.6E-23 T 23-04-2016 NIDE_RS15970 bbcc7ca205abce96b0e7957d1a28fcf3 185 Gene3D G3DSA:1.20.120.520 29 142 1.5E-4 T 23-04-2016 NIDE_RS15970 bbcc7ca205abce96b0e7957d1a28fcf3 185 Pfam PF01814 Hemerythrin HHE cation binding domain 12 89 3.5E-7 T 23-04-2016 IPR012312 Haemerythrin-like NIDE_RS09560 77c510634240e58978d2f74fcb24f106 125 SUPERFAMILY SSF144064 10 94 1.2E-7 T 23-04-2016 NIDE_RS09560 77c510634240e58978d2f74fcb24f106 125 Gene3D G3DSA:3.40.1570.10 10 66 2.1E-4 T 23-04-2016 NIDE_RS17025 1dbb58f80d2e691fc83c4390039465d9 84 Pfam PF06005 Protein of unknown function (DUF904) 1 70 9.2E-8 T 23-04-2016 IPR009252 Cell division protein ZapB GO:0000917|GO:0005737|GO:0043093 NIDE_RS03895 82aa0a542f6212dde48e5f1f0b56f285 304 PANTHER PTHR30071 55 304 5.0E-78 T 23-04-2016 NIDE_RS03895 82aa0a542f6212dde48e5f1f0b56f285 304 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 66 304 3.2E-79 T 23-04-2016 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 NIDE_RS03895 82aa0a542f6212dde48e5f1f0b56f285 304 PANTHER PTHR30071:SF5 55 304 5.0E-78 T 23-04-2016 NIDE_RS03895 82aa0a542f6212dde48e5f1f0b56f285 304 Pfam PF01578 Cytochrome C assembly protein 92 301 3.0E-59 T 23-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 NIDE_RS15695 dd584e82ee62312e6445203381943de5 154 SUPERFAMILY SSF53335 33 143 3.55E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS15695 dd584e82ee62312e6445203381943de5 154 Pfam PF08241 Methyltransferase domain 25 84 3.6E-12 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS15695 dd584e82ee62312e6445203381943de5 154 Gene3D G3DSA:3.40.50.150 33 91 7.7E-16 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00315 9c7bbd5456c8536b7c627a5bade02e7e 123 Pfam PF02411 MerT mercuric transport protein 13 123 1.6E-50 T 23-04-2016 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 Pfam PF13646 HEAT repeats 324 402 1.9E-12 T 23-04-2016 NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 Pfam PF13646 HEAT repeats 70 124 1.9E-8 T 23-04-2016 NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 Pfam PF13646 HEAT repeats 229 309 5.5E-18 T 23-04-2016 NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 Gene3D G3DSA:1.25.10.10 165 402 1.5E-45 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 Gene3D G3DSA:1.25.10.10 75 164 1.6E-12 T 23-04-2016 IPR011989 Armadillo-like helical NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 PANTHER PTHR12697:SF18 195 402 4.0E-31 T 23-04-2016 NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 PANTHER PTHR12697:SF18 79 159 4.0E-31 T 23-04-2016 NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 PANTHER PTHR12697 195 402 4.0E-31 T 23-04-2016 NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 PANTHER PTHR12697 79 159 4.0E-31 T 23-04-2016 NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 SMART SM00567 E-Z type HEAT repeats 268 297 1.3 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 SMART SM00567 E-Z type HEAT repeats 330 359 1.6 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 SMART SM00567 E-Z type HEAT repeats 361 390 0.54 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 SMART SM00567 E-Z type HEAT repeats 82 111 9.9 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 SMART SM00567 E-Z type HEAT repeats 113 142 16.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 SMART SM00567 E-Z type HEAT repeats 299 328 67.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 SMART SM00567 E-Z type HEAT repeats 237 266 0.0029 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 SMART SM00567 E-Z type HEAT repeats 206 235 0.87 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 SMART SM00567 E-Z type HEAT repeats 144 173 600.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat NIDE_RS05955 d4dc9cf534e9e194dce2bfd662644d20 416 SUPERFAMILY SSF48371 66 406 5.76E-42 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 NIDE_RS13345 873166bfdb12e91d4922d376826d72a9 106 Pfam PF12732 YtxH-like protein 13 77 2.9E-13 T 23-04-2016 IPR024623 Uncharacterised protein family YtxH NIDE_RS13345 873166bfdb12e91d4922d376826d72a9 106 PANTHER PTHR35792 2 98 1.6E-17 T 23-04-2016 NIDE_RS13345 873166bfdb12e91d4922d376826d72a9 106 PANTHER PTHR35792:SF1 2 98 1.6E-17 T 23-04-2016 NIDE_RS14480 f33e24dbd82ff32013437da221ff5c74 341 Gene3D G3DSA:3.40.190.10 34 130 6.2E-12 T 23-04-2016 NIDE_RS14480 f33e24dbd82ff32013437da221ff5c74 341 Gene3D G3DSA:3.40.190.10 131 287 7.0E-47 T 23-04-2016 NIDE_RS14480 f33e24dbd82ff32013437da221ff5c74 341 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 27 333 3.5E-64 T 23-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 NIDE_RS14480 f33e24dbd82ff32013437da221ff5c74 341 SUPERFAMILY SSF53850 27 335 2.52E-59 T 23-04-2016 NIDE_RS14480 f33e24dbd82ff32013437da221ff5c74 341 PANTHER PTHR30368 23 341 1.6E-96 T 23-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 NIDE_RS14480 f33e24dbd82ff32013437da221ff5c74 341 PANTHER PTHR30368:SF2 23 341 1.6E-96 T 23-04-2016 NIDE_RS14480 f33e24dbd82ff32013437da221ff5c74 341 Pfam PF13531 Bacterial extracellular solute-binding protein 34 290 1.1E-40 T 23-04-2016 NIDE_RS15225 8b74928a0f70ec750931236ce4095ba5 78 SUPERFAMILY SSF47336 5 75 6.41E-10 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS15225 8b74928a0f70ec750931236ce4095ba5 78 Gene3D G3DSA:1.10.1200.10 2 74 7.4E-9 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS15225 8b74928a0f70ec750931236ce4095ba5 78 Pfam PF00550 Phosphopantetheine attachment site 7 72 2.0E-4 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS21200 d895d1fa53353229041b074ae92c53ea 248 Gene3D G3DSA:3.40.50.1820 178 245 1.7E-28 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS21200 d895d1fa53353229041b074ae92c53ea 248 Gene3D G3DSA:3.40.50.1820 26 131 1.7E-28 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS21200 d895d1fa53353229041b074ae92c53ea 248 PANTHER PTHR16138 26 238 1.3E-29 T 23-04-2016 NIDE_RS21200 d895d1fa53353229041b074ae92c53ea 248 SUPERFAMILY SSF53474 5 245 9.86E-31 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS21200 d895d1fa53353229041b074ae92c53ea 248 Pfam PF12146 Serine aminopeptidase, S33 40 130 1.1E-13 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 NIDE_RS17865 545e672cd593d6b3b29949e3e2b0e777 267 Pfam PF01925 Sulfite exporter TauE/SafE 9 250 8.9E-44 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 NIDE_RS17865 545e672cd593d6b3b29949e3e2b0e777 267 PANTHER PTHR30269:SF14 1 261 1.7E-42 T 23-04-2016 NIDE_RS17865 545e672cd593d6b3b29949e3e2b0e777 267 PANTHER PTHR30269 1 261 1.7E-42 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 NIDE_RS10810 204d8fd993c810bf1d4b8eb4f0cc64be 256 PANTHER PTHR30433 2 252 4.2E-102 T 23-04-2016 NIDE_RS10810 204d8fd993c810bf1d4b8eb4f0cc64be 256 Pfam PF01618 MotA/TolQ/ExbB proton channel family 101 215 5.3E-25 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 NIDE_RS10810 204d8fd993c810bf1d4b8eb4f0cc64be 256 PANTHER PTHR30433:SF3 2 252 4.2E-102 T 23-04-2016 IPR022522 Flagellar motor stator, MotA NIDE_RS05825 2561d7510bcadb3118c19b4582970596 84 Gene3D G3DSA:3.30.70.920 5 77 7.2E-16 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIDE_RS05825 2561d7510bcadb3118c19b4582970596 84 Pfam PF01037 Lrp/AsnC ligand binding domain 7 76 1.9E-9 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIDE_RS05825 2561d7510bcadb3118c19b4582970596 84 SUPERFAMILY SSF54909 4 77 8.18E-13 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS00040 146016cc7774cc96693c8a2bae024ad9 148 PANTHER PTHR33452 1 147 1.8E-57 T 23-04-2016 NIDE_RS00040 146016cc7774cc96693c8a2bae024ad9 148 Pfam PF07681 DoxX 14 98 7.9E-19 T 23-04-2016 IPR032808 DoxX family NIDE_RS00040 146016cc7774cc96693c8a2bae024ad9 148 PANTHER PTHR33452:SF3 1 147 1.8E-57 T 23-04-2016 NIDE_RS13435 9ef58f4029f2d2676d3fe5369233bc9b 68 SUPERFAMILY SSF143100 6 50 6.93E-5 T 23-04-2016 NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 Gene3D G3DSA:3.40.50.300 51 252 1.7E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 Gene3D G3DSA:3.40.50.300 2 16 1.7E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 Pfam PF00005 ABC transporter 55 186 1.1E-16 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 SUPERFAMILY SSF52540 50 251 1.02E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 PANTHER PTHR24220:SF117 315 347 5.5E-108 T 23-04-2016 NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 PANTHER PTHR24220:SF117 7 17 5.5E-108 T 23-04-2016 NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 PANTHER PTHR24220:SF117 52 265 5.5E-108 T 23-04-2016 NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 PANTHER PTHR24220 315 347 5.5E-108 T 23-04-2016 NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 PANTHER PTHR24220 7 17 5.5E-108 T 23-04-2016 NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 PANTHER PTHR24220 52 265 5.5E-108 T 23-04-2016 NIDE_RS15230 ab803f759abe38eb27c8cc5ec54ff356 423 SMART SM00382 64 236 6.7E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 329 434 7.6E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 SUPERFAMILY SSF55874 286 435 5.89E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 434 5.6E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 5.6E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 415 5.6E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 SMART SM00387 328 437 1.4E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 SMART SM00065 51 199 1.8E-13 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 SUPERFAMILY SSF55781 34 200 4.58E-34 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 Gene3D G3DSA:3.30.565.10 287 435 6.4E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 PANTHER PTHR24423 200 230 1.7E-34 T 23-04-2016 NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 PANTHER PTHR24423 246 438 1.7E-34 T 23-04-2016 NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 PANTHER PTHR24423 20 39 1.7E-34 T 23-04-2016 NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 Pfam PF13185 GAF domain 50 190 3.8E-15 T 23-04-2016 IPR003018 GAF domain GO:0005515 NIDE_RS09225 52d024ac6a24375c47e3475d75bfbb12 438 Gene3D G3DSA:3.30.450.40 29 200 2.2E-35 T 23-04-2016 IPR029016 GAF domain-like NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 Gene3D G3DSA:3.40.50.300 4 193 4.1E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 SUPERFAMILY SSF52317 245 448 7.92E-33 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 248 439 1.6E-34 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 5 449 3.6E-131 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 PANTHER PTHR21343 251 458 1.2E-160 T 23-04-2016 NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 PANTHER PTHR21343 1 235 1.2E-160 T 23-04-2016 NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 Gene3D G3DSA:3.40.50.880 248 452 1.7E-26 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 3 440 42.678 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 166 1.5E-23 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 PANTHER PTHR21343:SF6 251 458 1.2E-160 T 23-04-2016 NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 PANTHER PTHR21343:SF6 1 235 1.2E-160 T 23-04-2016 NIDE_RS09615 0df5607b953a00ebe57d586bcb9900d2 458 SUPERFAMILY SSF52540 1 196 2.66E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS21030 aa27a44c4cfb2697e765aa33510e0d26 144 SMART SM00116 25 73 2.8E-5 T 23-04-2016 IPR000644 CBS domain NIDE_RS21030 aa27a44c4cfb2697e765aa33510e0d26 144 SMART SM00116 90 137 1.6E-5 T 23-04-2016 IPR000644 CBS domain NIDE_RS21030 aa27a44c4cfb2697e765aa33510e0d26 144 Pfam PF00571 CBS domain 18 72 2.0E-11 T 23-04-2016 IPR000644 CBS domain NIDE_RS21030 aa27a44c4cfb2697e765aa33510e0d26 144 Pfam PF00571 CBS domain 83 134 1.4E-11 T 23-04-2016 IPR000644 CBS domain NIDE_RS21030 aa27a44c4cfb2697e765aa33510e0d26 144 SUPERFAMILY SSF54631 16 136 3.31E-30 T 23-04-2016 NIDE_RS21030 aa27a44c4cfb2697e765aa33510e0d26 144 PANTHER PTHR11911 15 133 5.1E-30 T 23-04-2016 NIDE_RS21030 aa27a44c4cfb2697e765aa33510e0d26 144 Gene3D G3DSA:3.10.580.10 16 133 9.2E-31 T 23-04-2016 NIDE_RS02980 56091f18846aa7cdefe90c9799ccaa73 352 SUPERFAMILY SSF103481 199 291 5.1E-9 T 23-04-2016 NIDE_RS02980 56091f18846aa7cdefe90c9799ccaa73 352 SUPERFAMILY SSF103481 45 147 3.27E-9 T 23-04-2016 NIDE_RS02980 56091f18846aa7cdefe90c9799ccaa73 352 Pfam PF00892 EamA-like transporter family 6 145 2.6E-19 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 NIDE_RS02980 56091f18846aa7cdefe90c9799ccaa73 352 Pfam PF00892 EamA-like transporter family 157 288 1.2E-10 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 NIDE_RS08725 b8cff0a50f131da7c29b76588c6a7009 299 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 53 253 5.5E-27 T 23-04-2016 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system NIDE_RS03425 5a9d878f88de7b293b91227317d74311 633 Pfam PF02554 Carbon starvation protein CstA 31 398 4.6E-146 T 23-04-2016 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 NIDE_RS03425 5a9d878f88de7b293b91227317d74311 633 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 448 568 8.9E-31 T 23-04-2016 IPR025299 CstA, C-terminal domain NIDE_RS03425 5a9d878f88de7b293b91227317d74311 633 PANTHER PTHR30252 2 624 9.4E-297 T 23-04-2016 NIDE_RS03425 5a9d878f88de7b293b91227317d74311 633 PANTHER PTHR30252:SF3 2 624 9.4E-297 T 23-04-2016 NIDE_RS18940 6c0142c7e4ddf68d0a589310aaa9b5c4 349 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 54 261 3.2E-17 T 23-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 NIDE_RS18940 6c0142c7e4ddf68d0a589310aaa9b5c4 349 Gene3D G3DSA:3.40.720.10 30 261 4.8E-22 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 NIDE_RS18940 6c0142c7e4ddf68d0a589310aaa9b5c4 349 SUPERFAMILY SSF53649 53 328 5.23E-24 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 NIDE_RS12780 90e8ebf34172fe39f8797816b60ca14e 194 Pfam PF13289 SIR2-like domain 9 88 2.0E-5 T 23-04-2016 NIDE_RS00065 271ece354167d78b29b8455add7de419 152 Pfam PF16798 Domain of unknown function (DUF5069) 16 151 1.6E-45 T 23-04-2016 IPR031849 Domain of unknown function DUF5069 NIDE_RS21045 0effee1c8159496cea692a706625da8a 145 PANTHER PTHR11911 18 133 1.1E-25 T 23-04-2016 NIDE_RS21045 0effee1c8159496cea692a706625da8a 145 Gene3D G3DSA:3.10.580.10 18 137 1.8E-32 T 23-04-2016 NIDE_RS21045 0effee1c8159496cea692a706625da8a 145 SUPERFAMILY SSF54631 16 137 1.77E-31 T 23-04-2016 NIDE_RS21045 0effee1c8159496cea692a706625da8a 145 SMART SM00116 25 73 6.8E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS21045 0effee1c8159496cea692a706625da8a 145 SMART SM00116 90 137 3.4E-5 T 23-04-2016 IPR000644 CBS domain NIDE_RS21045 0effee1c8159496cea692a706625da8a 145 Pfam PF00571 CBS domain 18 72 1.9E-11 T 23-04-2016 IPR000644 CBS domain NIDE_RS21045 0effee1c8159496cea692a706625da8a 145 Pfam PF00571 CBS domain 83 136 1.2E-10 T 23-04-2016 IPR000644 CBS domain NIDE_RS01760 ff6f72a5fcc3b93e0e3e659a8d329eec 273 PANTHER PTHR30477:SF0 1 260 4.1E-71 T 23-04-2016 NIDE_RS01760 ff6f72a5fcc3b93e0e3e659a8d329eec 273 Gene3D G3DSA:1.10.3470.10 15 258 9.8E-7 T 23-04-2016 IPR029022 ABC transporter, BtuC-like NIDE_RS01760 ff6f72a5fcc3b93e0e3e659a8d329eec 273 PANTHER PTHR30477 1 260 4.1E-71 T 23-04-2016 NIDE_RS01760 ff6f72a5fcc3b93e0e3e659a8d329eec 273 Pfam PF00950 ABC 3 transport family 7 262 1.3E-74 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 NIDE_RS01760 ff6f72a5fcc3b93e0e3e659a8d329eec 273 SUPERFAMILY SSF81345 3 258 6.15E-41 T 23-04-2016 IPR029022 ABC transporter, BtuC-like NIDE_RS18700 f5bd1396e2f92bd0aa62d121f72338b5 144 Pfam PF12019 Type II transport protein GspH 47 139 4.4E-6 T 23-04-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 NIDE_RS18700 f5bd1396e2f92bd0aa62d121f72338b5 144 SUPERFAMILY SSF54523 7 120 5.57E-10 T 23-04-2016 NIDE_RS18700 f5bd1396e2f92bd0aa62d121f72338b5 144 Gene3D G3DSA:3.30.700.10 7 103 4.1E-5 T 23-04-2016 NIDE_RS18125 4e7a0af3f4e728540349e134127a89a0 217 PANTHER PTHR13887 17 210 1.8E-34 T 23-04-2016 NIDE_RS18125 4e7a0af3f4e728540349e134127a89a0 217 Pfam PF13462 Thioredoxin 36 176 2.5E-29 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS18125 4e7a0af3f4e728540349e134127a89a0 217 SUPERFAMILY SSF52833 26 206 9.91E-41 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS18125 4e7a0af3f4e728540349e134127a89a0 217 Gene3D G3DSA:3.40.30.10 34 210 4.4E-38 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS07160 1b7c775dd2043b9dbf92ac00804888b6 64 PANTHER PTHR34504:SF2 1 56 1.3E-14 T 23-04-2016 NIDE_RS07160 1b7c775dd2043b9dbf92ac00804888b6 64 SUPERFAMILY SSF143100 1 53 8.76E-18 T 23-04-2016 NIDE_RS07160 1b7c775dd2043b9dbf92ac00804888b6 64 PANTHER PTHR34504 1 56 1.3E-14 T 23-04-2016 NIDE_RS07160 1b7c775dd2043b9dbf92ac00804888b6 64 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 53 1.4E-9 T 23-04-2016 IPR031807 HicB-like antitoxin of toxin-antitoxin system NIDE_RS01845 d4915ae3e7ebafb6733ec6d45d4b58c4 65 Pfam PF01632 Ribosomal protein L35 4 61 1.1E-21 T 23-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS01845 d4915ae3e7ebafb6733ec6d45d4b58c4 65 SUPERFAMILY SSF143034 3 64 1.57E-20 T 23-04-2016 NIDE_RS01845 d4915ae3e7ebafb6733ec6d45d4b58c4 65 PANTHER PTHR33343 1 64 5.0E-20 T 23-04-2016 NIDE_RS01845 d4915ae3e7ebafb6733ec6d45d4b58c4 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 6 32 - T 23-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 NIDE_RS01845 d4915ae3e7ebafb6733ec6d45d4b58c4 65 PRINTS PR00064 Ribosomal protein L35 signature 37 55 8.8E-16 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 NIDE_RS01845 d4915ae3e7ebafb6733ec6d45d4b58c4 65 PRINTS PR00064 Ribosomal protein L35 signature 4 21 8.8E-16 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 NIDE_RS01845 d4915ae3e7ebafb6733ec6d45d4b58c4 65 PRINTS PR00064 Ribosomal protein L35 signature 22 36 8.8E-16 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 NIDE_RS01845 d4915ae3e7ebafb6733ec6d45d4b58c4 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 4 64 2.4E-22 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 NIDE_RS01845 d4915ae3e7ebafb6733ec6d45d4b58c4 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 2 65 15.22 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 NIDE_RS10730 31a9342b115f8d324d32958375cd8d2b 119 PANTHER PTHR37166 32 119 1.5E-16 T 23-04-2016 NIDE_RS10730 31a9342b115f8d324d32958375cd8d2b 119 SUPERFAMILY SSF160214 37 118 4.05E-21 T 23-04-2016 IPR005186 FlaG protein NIDE_RS10730 31a9342b115f8d324d32958375cd8d2b 119 Gene3D G3DSA:3.30.160.170 30 114 2.0E-21 T 23-04-2016 IPR005186 FlaG protein NIDE_RS10730 31a9342b115f8d324d32958375cd8d2b 119 PANTHER PTHR37166:SF1 32 119 1.5E-16 T 23-04-2016 NIDE_RS10730 31a9342b115f8d324d32958375cd8d2b 119 Pfam PF03646 FlaG protein 22 116 2.8E-23 T 23-04-2016 IPR005186 FlaG protein NIDE_RS13715 30ba95424a49cf86d56ef265dc014327 562 SUPERFAMILY SSF53756 286 497 2.89E-10 T 23-04-2016 NIDE_RS15540 00f2013603d00643028e91ed68e3a491 462 PANTHER PTHR30061 10 455 1.9E-53 T 23-04-2016 NIDE_RS15540 00f2013603d00643028e91ed68e3a491 462 Gene3D G3DSA:3.40.190.10 191 390 5.7E-55 T 23-04-2016 NIDE_RS15540 00f2013603d00643028e91ed68e3a491 462 PANTHER PTHR30061:SF14 10 455 1.9E-53 T 23-04-2016 NIDE_RS15540 00f2013603d00643028e91ed68e3a491 462 Gene3D G3DSA:3.40.190.10 62 190 6.7E-18 T 23-04-2016 NIDE_RS15540 00f2013603d00643028e91ed68e3a491 462 SUPERFAMILY SSF53850 62 433 9.39E-77 T 23-04-2016 NIDE_RS15540 00f2013603d00643028e91ed68e3a491 462 Pfam PF01547 Bacterial extracellular solute-binding protein 71 370 2.0E-36 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 NIDE_RS07815 a8038260137f91037362af0af0ff6742 126 SUPERFAMILY SSF141371 8 102 2.16E-10 T 23-04-2016 NIDE_RS07815 a8038260137f91037362af0af0ff6742 126 Pfam PF07238 PilZ domain 4 99 9.0E-9 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS16960 7f3d41299fd3e7409d121ab558bdca17 345 SUPERFAMILY SSF117892 115 233 5.49E-19 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS16960 7f3d41299fd3e7409d121ab558bdca17 345 SMART SM00244 51 226 1.9E-21 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS16960 7f3d41299fd3e7409d121ab558bdca17 345 TIGRFAM TIGR01933 hflK: HflK protein 54 329 3.1E-80 T 23-04-2016 IPR010201 HflK GO:0016021 NIDE_RS16960 7f3d41299fd3e7409d121ab558bdca17 345 Pfam PF01145 SPFH domain / Band 7 family 55 241 5.2E-26 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS16960 7f3d41299fd3e7409d121ab558bdca17 345 PANTHER PTHR10264:SF51 111 333 4.3E-82 T 23-04-2016 IPR010201 HflK GO:0016021 NIDE_RS16960 7f3d41299fd3e7409d121ab558bdca17 345 PANTHER PTHR10264:SF51 39 95 4.3E-82 T 23-04-2016 IPR010201 HflK GO:0016021 NIDE_RS16960 7f3d41299fd3e7409d121ab558bdca17 345 PANTHER PTHR10264 111 333 4.3E-82 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS16960 7f3d41299fd3e7409d121ab558bdca17 345 PANTHER PTHR10264 39 95 4.3E-82 T 23-04-2016 IPR001972 Stomatin family GO:0016020 NIDE_RS03600 4fac9eea3284807e3f9122a86e57b689 401 PANTHER PTHR28657 11 401 4.2E-117 T 23-04-2016 NIDE_RS03600 4fac9eea3284807e3f9122a86e57b689 401 SUPERFAMILY SSF140959 13 397 6.54E-104 T 23-04-2016 NIDE_RS03600 4fac9eea3284807e3f9122a86e57b689 401 Pfam PF01231 Indoleamine 2,3-dioxygenase 11 397 4.6E-84 T 23-04-2016 IPR000898 Indoleamine 2,3-dioxygenase GO:0020037 NIDE_RS06475 435d85ea48fa1970334f9eae40b35758 346 SUPERFAMILY SSF53795 151 228 1.95E-11 T 23-04-2016 NIDE_RS06475 435d85ea48fa1970334f9eae40b35758 346 Gene3D G3DSA:3.40.50.300 149 210 2.8E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17615 02b114f54723505396abfb94ce55b65c 400 ProSitePatterns PS00195 Glutaredoxin active site. 36 52 - T 23-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 NIDE_RS17615 02b114f54723505396abfb94ce55b65c 400 Pfam PF00462 Glutaredoxin 34 102 7.4E-5 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 NIDE_RS17615 02b114f54723505396abfb94ce55b65c 400 SUPERFAMILY SSF52833 33 123 3.18E-9 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS17615 02b114f54723505396abfb94ce55b65c 400 Gene3D G3DSA:3.40.30.10 33 109 6.1E-8 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS03305 2679407bb8f7ce9fd600bfbcb40268f0 240 PANTHER PTHR39188 24 191 6.3E-19 T 23-04-2016 NIDE_RS12705 3e6ed7da9e0a7dc13274f95db5e2e8d3 181 SMART SM00507 71 124 4.6E-12 T 23-04-2016 IPR003615 HNH nuclease NIDE_RS12705 3e6ed7da9e0a7dc13274f95db5e2e8d3 181 PANTHER PTHR33877 1 176 1.7E-65 T 23-04-2016 NIDE_RS12705 3e6ed7da9e0a7dc13274f95db5e2e8d3 181 Pfam PF14279 HNH endonuclease 84 137 2.9E-18 T 23-04-2016 IPR029471 HNH endonuclease 5 NIDE_RS12705 3e6ed7da9e0a7dc13274f95db5e2e8d3 181 PANTHER PTHR33877:SF2 1 176 1.7E-65 T 23-04-2016 NIDE_RS08630 ffd0fa1e8b83eb1499d204a2e0e1fddd 190 Pfam PF01323 DSBA-like thioredoxin domain 6 188 5.4E-12 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 NIDE_RS08630 ffd0fa1e8b83eb1499d204a2e0e1fddd 190 Gene3D G3DSA:3.40.30.10 6 189 7.9E-18 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS08630 ffd0fa1e8b83eb1499d204a2e0e1fddd 190 SUPERFAMILY SSF52833 6 189 4.3E-18 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS15930 9ef79e649d54312aca3e2d62f59b3b09 393 SUPERFAMILY SSF110296 5 86 8.11E-68 T 23-04-2016 NIDE_RS15930 9ef79e649d54312aca3e2d62f59b3b09 393 SUPERFAMILY SSF110296 124 390 8.11E-68 T 23-04-2016 NIDE_RS15930 9ef79e649d54312aca3e2d62f59b3b09 393 Pfam PF02012 BNR/Asp-box repeat 206 216 0.066 T 23-04-2016 IPR002860 BNR repeat NIDE_RS15930 9ef79e649d54312aca3e2d62f59b3b09 393 Pfam PF02012 BNR/Asp-box repeat 65 75 0.04 T 23-04-2016 IPR002860 BNR repeat NIDE_RS15930 9ef79e649d54312aca3e2d62f59b3b09 393 Gene3D G3DSA:2.130.10.10 5 84 1.8E-85 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS15930 9ef79e649d54312aca3e2d62f59b3b09 393 Gene3D G3DSA:2.130.10.10 116 390 1.8E-85 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS15750 7c44558c0f76a0b1f0a1331b0e59ab11 374 SUPERFAMILY SSF55681 26 341 3.38E-64 T 23-04-2016 NIDE_RS15750 7c44558c0f76a0b1f0a1331b0e59ab11 374 Pfam PF13393 Histidyl-tRNA synthetase 27 337 2.9E-88 T 23-04-2016 NIDE_RS15750 7c44558c0f76a0b1f0a1331b0e59ab11 374 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 31 341 5.3E-90 T 23-04-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 UniPathway: UPA00031 NIDE_RS15750 7c44558c0f76a0b1f0a1331b0e59ab11 374 PIRSF PIRSF001549 22 370 3.1E-66 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 NIDE_RS15750 7c44558c0f76a0b1f0a1331b0e59ab11 374 PANTHER PTHR11476 24 346 6.1E-75 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 NIDE_RS15750 7c44558c0f76a0b1f0a1331b0e59ab11 374 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 34 372 27.797 T 23-04-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 UniPathway: UPA00031 NIDE_RS15750 7c44558c0f76a0b1f0a1331b0e59ab11 374 Gene3D G3DSA:3.30.930.10 36 338 6.6E-69 T 23-04-2016 NIDE_RS15750 7c44558c0f76a0b1f0a1331b0e59ab11 374 PANTHER PTHR11476:SF5 24 346 6.1E-75 T 23-04-2016 NIDE_RS06380 c38262a243d78c5cf68d8a67e7107762 605 SUPERFAMILY SSF81593 403 555 1.18E-31 T 23-04-2016 NIDE_RS06380 c38262a243d78c5cf68d8a67e7107762 605 Gene3D G3DSA:3.30.460.10 205 388 2.6E-54 T 23-04-2016 NIDE_RS06380 c38262a243d78c5cf68d8a67e7107762 605 Pfam PF08335 GlnD PII-uridylyltransferase 409 555 3.1E-31 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 NIDE_RS06380 c38262a243d78c5cf68d8a67e7107762 605 PANTHER PTHR30621 30 559 3.0E-111 T 23-04-2016 NIDE_RS06380 c38262a243d78c5cf68d8a67e7107762 605 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 122 380 1.2E-64 T 23-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 NIDE_RS06380 c38262a243d78c5cf68d8a67e7107762 605 SUPERFAMILY SSF81301 94 388 2.03E-71 T 23-04-2016 NIDE_RS11935 27d7af22e58a6b62277978296eef3eeb 242 Gene3D G3DSA:3.60.15.10 3 228 1.2E-31 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS11935 27d7af22e58a6b62277978296eef3eeb 242 SUPERFAMILY SSF56281 3 232 1.82E-23 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS20015 05c0fa768c5ecd9b854cd61c1b94ef2d 113 Gene3D G3DSA:3.30.70.120 26 103 4.7E-6 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal NIDE_RS20015 05c0fa768c5ecd9b854cd61c1b94ef2d 113 Pfam PF02641 Uncharacterized ACR, COG1993 24 100 4.2E-5 T 23-04-2016 IPR003793 Domain of unknown function DUF190 NIDE_RS20015 05c0fa768c5ecd9b854cd61c1b94ef2d 113 SUPERFAMILY SSF54913 5 106 2.72E-19 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta NIDE_RS18710 e55393355846ae78bb25b3b40042ee10 94 SMART SM00421 28 85 1.7E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS18710 e55393355846ae78bb25b3b40042ee10 94 PANTHER PTHR26402:SF583 27 86 2.9E-15 T 23-04-2016 NIDE_RS18710 e55393355846ae78bb25b3b40042ee10 94 PANTHER PTHR26402 27 86 2.9E-15 T 23-04-2016 NIDE_RS18710 e55393355846ae78bb25b3b40042ee10 94 Pfam PF00196 Bacterial regulatory proteins, luxR family 30 83 1.7E-20 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS18710 e55393355846ae78bb25b3b40042ee10 94 ProSitePatterns PS00622 LuxR-type HTH domain signature. 45 72 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS18710 e55393355846ae78bb25b3b40042ee10 94 Gene3D G3DSA:1.10.10.10 24 87 1.9E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS18710 e55393355846ae78bb25b3b40042ee10 94 SUPERFAMILY SSF46894 21 90 5.1E-21 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 NIDE_RS18710 e55393355846ae78bb25b3b40042ee10 94 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 45 61 3.3E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS18710 e55393355846ae78bb25b3b40042ee10 94 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 61 73 3.3E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS18710 e55393355846ae78bb25b3b40042ee10 94 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 31 45 3.3E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 NIDE_RS06300 fc14568b79d0f64d383cafc52d9aead7 442 Gene3D G3DSA:1.10.3430.10 38 422 1.6E-134 T 23-04-2016 IPR029020 Ammonium/urea transporter NIDE_RS06300 fc14568b79d0f64d383cafc52d9aead7 442 TIGRFAM TIGR00836 amt: ammonium transporter 42 441 4.5E-136 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 NIDE_RS06300 fc14568b79d0f64d383cafc52d9aead7 442 Pfam PF00909 Ammonium Transporter Family 44 441 7.4E-124 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 NIDE_RS06300 fc14568b79d0f64d383cafc52d9aead7 442 ProSitePatterns PS01219 Ammonium transporters signature. 197 222 - T 23-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 NIDE_RS06300 fc14568b79d0f64d383cafc52d9aead7 442 PANTHER PTHR11730 14 441 1.9E-182 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 NIDE_RS06300 fc14568b79d0f64d383cafc52d9aead7 442 PANTHER PTHR11730:SF17 14 441 1.9E-182 T 23-04-2016 NIDE_RS06300 fc14568b79d0f64d383cafc52d9aead7 442 SUPERFAMILY SSF111352 38 422 7.19E-125 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 NIDE_RS07760 9445b7abefc539a151d4aea430a578df 142 SMART SM00448 3 122 2.4E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS07760 9445b7abefc539a151d4aea430a578df 142 Gene3D G3DSA:3.40.50.2300 4 123 7.9E-28 T 23-04-2016 NIDE_RS07760 9445b7abefc539a151d4aea430a578df 142 SUPERFAMILY SSF52172 4 127 2.28E-26 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS07760 9445b7abefc539a151d4aea430a578df 142 PANTHER PTHR26402 3 121 3.3E-26 T 23-04-2016 NIDE_RS07760 9445b7abefc539a151d4aea430a578df 142 Pfam PF00072 Response regulator receiver domain 5 120 5.6E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08590 fa44ec18e08185a2994aead2c509f53e 122 Pfam PF00805 Pentapeptide repeats (8 copies) 61 97 8.7E-10 T 23-04-2016 IPR001646 Pentapeptide repeat NIDE_RS08590 fa44ec18e08185a2994aead2c509f53e 122 PIRSF PIRSF029688 10 122 7.7E-38 T 23-04-2016 IPR016933 Pentapeptide repeat-containing uncharacterised conserved protein UCP029688 NIDE_RS08590 fa44ec18e08185a2994aead2c509f53e 122 SUPERFAMILY SSF141571 24 97 8.89E-14 T 23-04-2016 NIDE_RS11585 fab845bbb4b08836cb54fd4f2047f8d9 147 Gene3D G3DSA:1.20.120.20 39 140 0.001 T 23-04-2016 NIDE_RS16540 a038a2f1bbe655ed8654351e9fac7654 260 Pfam PF00795 Carbon-nitrogen hydrolase 7 232 7.9E-21 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS16540 a038a2f1bbe655ed8654351e9fac7654 260 SUPERFAMILY SSF56317 4 246 1.14E-37 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS16540 a038a2f1bbe655ed8654351e9fac7654 260 Gene3D G3DSA:3.60.110.10 5 246 1.1E-42 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 NIDE_RS16540 a038a2f1bbe655ed8654351e9fac7654 260 PANTHER PTHR23088 1 245 2.5E-29 T 23-04-2016 NIDE_RS15160 bcd78321ef1dfc2233e6ae60b518b305 487 PANTHER PTHR15239:SF1 329 471 1.6E-55 T 23-04-2016 NIDE_RS15160 bcd78321ef1dfc2233e6ae60b518b305 487 PANTHER PTHR15239:SF1 1 313 1.6E-55 T 23-04-2016 NIDE_RS15160 bcd78321ef1dfc2233e6ae60b518b305 487 Pfam PF05670 Domain of unknown function (DUF814) 361 449 1.5E-23 T 23-04-2016 IPR008532 Domain of unknown function DUF814 NIDE_RS15160 bcd78321ef1dfc2233e6ae60b518b305 487 Gene3D G3DSA:2.30.310.10 1 151 9.9E-34 T 23-04-2016 NIDE_RS15160 bcd78321ef1dfc2233e6ae60b518b305 487 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 181 323 5.0E-25 T 23-04-2016 NIDE_RS15160 bcd78321ef1dfc2233e6ae60b518b305 487 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 8 151 4.3E-31 T 23-04-2016 NIDE_RS15160 bcd78321ef1dfc2233e6ae60b518b305 487 PANTHER PTHR15239 329 471 1.6E-55 T 23-04-2016 NIDE_RS15160 bcd78321ef1dfc2233e6ae60b518b305 487 PANTHER PTHR15239 1 313 1.6E-55 T 23-04-2016 NIDE_RS17270 2f9ad6ab43f160c03a65c50fc551e504 157 SUPERFAMILY SSF54631 22 144 3.31E-27 T 23-04-2016 NIDE_RS17270 2f9ad6ab43f160c03a65c50fc551e504 157 Pfam PF00571 CBS domain 27 81 2.5E-7 T 23-04-2016 IPR000644 CBS domain NIDE_RS17270 2f9ad6ab43f160c03a65c50fc551e504 157 Pfam PF00571 CBS domain 91 145 3.8E-12 T 23-04-2016 IPR000644 CBS domain NIDE_RS17270 2f9ad6ab43f160c03a65c50fc551e504 157 SMART SM00116 98 146 5.4E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS17270 2f9ad6ab43f160c03a65c50fc551e504 157 SMART SM00116 34 81 0.25 T 23-04-2016 IPR000644 CBS domain NIDE_RS17270 2f9ad6ab43f160c03a65c50fc551e504 157 Gene3D G3DSA:3.10.580.10 21 146 5.8E-29 T 23-04-2016 NIDE_RS17270 2f9ad6ab43f160c03a65c50fc551e504 157 PANTHER PTHR11911 24 147 1.9E-23 T 23-04-2016 NIDE_RS10775 67b0e2a72f3f33055fa9cfc492012257 216 SUPERFAMILY SSF75708 24 214 2.88E-24 T 23-04-2016 NIDE_RS10775 67b0e2a72f3f33055fa9cfc492012257 216 Pfam PF04344 Chemotaxis phosphatase, CheZ 27 215 2.4E-20 T 23-04-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- NIDE_RS10775 67b0e2a72f3f33055fa9cfc492012257 216 Gene3D G3DSA:1.10.287.500 53 168 3.3E-18 T 23-04-2016 NIDE_RS09510 54102daf00fb1be169807eb604f33a06 88 Pfam PF13192 Thioredoxin domain 4 79 2.4E-10 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS09510 54102daf00fb1be169807eb604f33a06 88 SUPERFAMILY SSF52833 1 79 5.52E-14 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS09510 54102daf00fb1be169807eb604f33a06 88 Gene3D G3DSA:3.40.30.10 5 79 5.2E-11 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS14660 0d99284837f13f7967195c09b2381938 108 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 2 104 1.6E-18 T 23-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 NIDE_RS14660 0d99284837f13f7967195c09b2381938 108 SUPERFAMILY SSF50118 1 107 4.58E-24 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor NIDE_RS14660 0d99284837f13f7967195c09b2381938 108 PANTHER PTHR33988 1 107 7.7E-15 T 23-04-2016 NIDE_RS14660 0d99284837f13f7967195c09b2381938 108 Gene3D G3DSA:2.30.30.110 1 107 7.5E-14 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor NIDE_RS01790 8cb4da9fa01fa8df7701385089db223c 277 Pfam PF13229 Right handed beta helix region 124 242 5.8E-9 T 23-04-2016 NIDE_RS01790 8cb4da9fa01fa8df7701385089db223c 277 PANTHER PTHR22990 128 238 3.0E-12 T 23-04-2016 NIDE_RS01790 8cb4da9fa01fa8df7701385089db223c 277 SUPERFAMILY SSF51126 28 264 9.43E-23 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS01790 8cb4da9fa01fa8df7701385089db223c 277 Gene3D G3DSA:2.160.20.10 45 233 1.7E-8 T 23-04-2016 IPR012334 Pectin lyase fold NIDE_RS17645 fcc039d65c2b1f1668a9e5894461a9ee 160 Gene3D G3DSA:1.20.120.520 12 148 1.6E-16 T 23-04-2016 NIDE_RS17645 fcc039d65c2b1f1668a9e5894461a9ee 160 Pfam PF01814 Hemerythrin HHE cation binding domain 9 125 1.1E-14 T 23-04-2016 IPR012312 Haemerythrin-like NIDE_RS14525 a64a4018b341d8a14be00b8557a0e2a5 230 PANTHER PTHR13061:SF8 35 190 6.3E-42 T 23-04-2016 NIDE_RS14525 a64a4018b341d8a14be00b8557a0e2a5 230 Gene3D G3DSA:2.160.10.10 41 190 9.5E-31 T 23-04-2016 NIDE_RS14525 a64a4018b341d8a14be00b8557a0e2a5 230 SUPERFAMILY SSF51161 39 216 2.36E-30 T 23-04-2016 IPR011004 Trimeric LpxA-like NIDE_RS14525 a64a4018b341d8a14be00b8557a0e2a5 230 PANTHER PTHR13061 35 190 6.3E-42 T 23-04-2016 NIDE_RS15420 e2d57962206f19cf3364fca7f86bc814 209 Pfam PF00753 Metallo-beta-lactamase superfamily 9 182 3.8E-29 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS15420 e2d57962206f19cf3364fca7f86bc814 209 PANTHER PTHR11935 1 209 1.6E-61 T 23-04-2016 NIDE_RS15420 e2d57962206f19cf3364fca7f86bc814 209 SMART SM00849 12 191 1.7E-35 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS15420 e2d57962206f19cf3364fca7f86bc814 209 SUPERFAMILY SSF56281 3 208 4.2E-51 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS15420 e2d57962206f19cf3364fca7f86bc814 209 PANTHER PTHR11935:SF8 1 209 1.6E-61 T 23-04-2016 NIDE_RS15420 e2d57962206f19cf3364fca7f86bc814 209 Gene3D G3DSA:3.60.15.10 6 209 8.8E-52 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS18020 7ad7f2f39623542c0ab226f647fa7914 195 SUPERFAMILY SSF52972 1 168 2.22E-41 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like NIDE_RS18020 7ad7f2f39623542c0ab226f647fa7914 195 Pfam PF02545 Maf-like protein 5 169 8.4E-37 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 NIDE_RS18020 7ad7f2f39623542c0ab226f647fa7914 195 PIRSF PIRSF006305 1 173 5.0E-36 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 NIDE_RS18020 7ad7f2f39623542c0ab226f647fa7914 195 Gene3D G3DSA:3.90.950.10 1 172 1.0E-45 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like NIDE_RS18020 7ad7f2f39623542c0ab226f647fa7914 195 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 168 1.9E-41 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 NIDE_RS18020 7ad7f2f39623542c0ab226f647fa7914 195 Hamap MF_00528 Septum formation protein Maf [maf]. 1 174 21.387 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 NIDE_RS16840 1949160e7e5cc5e987505369eb57db5d 158 PANTHER PTHR10681 32 149 8.8E-19 T 23-04-2016 NIDE_RS16840 1949160e7e5cc5e987505369eb57db5d 158 Gene3D G3DSA:1.10.490.10 37 151 1.9E-39 T 23-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 NIDE_RS16840 1949160e7e5cc5e987505369eb57db5d 158 SUPERFAMILY SSF46458 33 150 3.08E-32 T 23-04-2016 IPR009050 Globin-like NIDE_RS16840 1949160e7e5cc5e987505369eb57db5d 158 Pfam PF01152 Bacterial-like globin 37 149 5.0E-15 T 23-04-2016 IPR001486 Truncated hemoglobin GO:0019825 NIDE_RS15465 192ede8624c927da1de6634aa815a478 166 Pfam PF09970 Nucleotidyl transferase of unknown function (DUF2204) 113 160 5.1E-5 T 23-04-2016 IPR018700 Protein of unknown function DUF2204 NIDE_RS15465 192ede8624c927da1de6634aa815a478 166 SUPERFAMILY SSF81301 3 159 2.29E-20 T 23-04-2016 NIDE_RS08610 759503878701af6de2d2b0e7baf31ad1 448 Pfam PF13487 HD domain 250 308 1.1E-18 T 23-04-2016 NIDE_RS08610 759503878701af6de2d2b0e7baf31ad1 448 SUPERFAMILY SSF109604 196 355 6.85E-23 T 23-04-2016 NIDE_RS08610 759503878701af6de2d2b0e7baf31ad1 448 Gene3D G3DSA:1.10.3210.10 196 321 5.7E-18 T 23-04-2016 IPR006674 HD domain NIDE_RS08610 759503878701af6de2d2b0e7baf31ad1 448 Pfam PF11871 Domain of unknown function (DUF3391) 24 156 1.6E-20 T 23-04-2016 IPR021812 Protein of unknown function DUF3391 NIDE_RS10495 f31bdb72a0d83dc7be6b400bd7b41eea 96 PANTHER PTHR30435 19 84 2.3E-21 T 23-04-2016 NIDE_RS10495 f31bdb72a0d83dc7be6b400bd7b41eea 96 Pfam PF03963 Flagellar hook capping protein - N-terminal region 14 74 6.0E-22 T 23-04-2016 IPR005648 Flagellar hook capping protein NIDE_RS14185 eac9628dc7498d74fb6526ad64a2115b 212 Gene3D G3DSA:3.30.230.10 67 208 1.3E-18 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIDE_RS14185 eac9628dc7498d74fb6526ad64a2115b 212 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 107 204 3.1E-7 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 NIDE_RS14185 eac9628dc7498d74fb6526ad64a2115b 212 SUPERFAMILY SSF54211 80 207 2.12E-14 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold NIDE_RS18985 d59599e0a3665819347e032b2df11210 139 Gene3D G3DSA:3.40.1260.10 3 139 1.4E-24 T 23-04-2016 IPR027396 DsrEFH-like NIDE_RS18985 d59599e0a3665819347e032b2df11210 139 SUPERFAMILY SSF75169 6 51 7.53E-9 T 23-04-2016 IPR027396 DsrEFH-like NIDE_RS18985 d59599e0a3665819347e032b2df11210 139 SUPERFAMILY SSF75169 79 135 7.53E-9 T 23-04-2016 IPR027396 DsrEFH-like NIDE_RS16265 f9d72e9f29a2df1ae48bb9946435c7f1 267 SUPERFAMILY SSF53474 3 260 9.17E-68 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS16265 f9d72e9f29a2df1ae48bb9946435c7f1 267 PANTHER PTHR10992 2 261 6.7E-59 T 23-04-2016 NIDE_RS16265 f9d72e9f29a2df1ae48bb9946435c7f1 267 Gene3D G3DSA:3.40.50.1820 2 261 5.1E-67 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS16265 f9d72e9f29a2df1ae48bb9946435c7f1 267 Pfam PF00561 alpha/beta hydrolase fold 20 247 1.1E-30 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS16265 f9d72e9f29a2df1ae48bb9946435c7f1 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 1.8E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS16265 f9d72e9f29a2df1ae48bb9946435c7f1 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 88 101 1.8E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS16265 f9d72e9f29a2df1ae48bb9946435c7f1 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 44 59 1.8E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS16265 f9d72e9f29a2df1ae48bb9946435c7f1 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 205 219 1.8E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 NIDE_RS20650 cda636fa3007dbc8f7cf9f66f4dd8669 542 PANTHER PTHR22926:SF3 1 350 3.6E-72 T 23-04-2016 NIDE_RS20650 cda636fa3007dbc8f7cf9f66f4dd8669 542 PANTHER PTHR22926 1 350 3.6E-72 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS20650 cda636fa3007dbc8f7cf9f66f4dd8669 542 ProSitePatterns PS01348 MraY family signature 2. 147 158 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS20650 cda636fa3007dbc8f7cf9f66f4dd8669 542 Pfam PF00953 Glycosyl transferase family 4 75 227 1.0E-37 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 NIDE_RS19105 111d30e878d1670b6fff4fcb28a15e1f 633 SUPERFAMILY SSF56925 535 623 4.08E-5 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS19105 111d30e878d1670b6fff4fcb28a15e1f 633 Pfam PF13387 Domain of unknown function (DUF4105) 131 300 3.9E-58 T 23-04-2016 IPR025178 Domain of unknown function DUF4105 NIDE_RS02180 0de1bced933649c9dc8c9247d2ee8a4e 180 Gene3D G3DSA:2.40.160.20 49 149 3.3E-4 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS02180 0de1bced933649c9dc8c9247d2ee8a4e 180 SUPERFAMILY SSF56925 37 151 3.14E-8 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS21145 b06f7f31184a1648b173cb66df3e2bea 384 PANTHER PTHR11102 272 341 1.8E-12 T 23-04-2016 NIDE_RS21145 b06f7f31184a1648b173cb66df3e2bea 384 Gene3D G3DSA:1.25.40.10 273 360 2.2E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS21145 b06f7f31184a1648b173cb66df3e2bea 384 Pfam PF10544 T5orf172 domain 7 91 1.3E-12 T 23-04-2016 IPR018306 Bacteriophage T5, Orf172 DNA-binding NIDE_RS21145 b06f7f31184a1648b173cb66df3e2bea 384 SUPERFAMILY SSF81901 272 348 1.96E-15 T 23-04-2016 NIDE_RS21145 b06f7f31184a1648b173cb66df3e2bea 384 SMART SM00671 275 310 9.4 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS21145 b06f7f31184a1648b173cb66df3e2bea 384 SMART SM00671 311 346 1.2E-5 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS21145 b06f7f31184a1648b173cb66df3e2bea 384 SMART SM00974 15 92 2.3E-16 T 23-04-2016 IPR018306 Bacteriophage T5, Orf172 DNA-binding NIDE_RS21145 b06f7f31184a1648b173cb66df3e2bea 384 Pfam PF08238 Sel1 repeat 286 310 73.0 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS21145 b06f7f31184a1648b173cb66df3e2bea 384 Pfam PF08238 Sel1 repeat 311 341 2.3E-6 T 23-04-2016 IPR006597 Sel1-like repeat NIDE_RS15510 b60d85c29e0c5def932f0db61e05186a 117 Pfam PF04892 VanZ like family 27 107 2.3E-13 T 23-04-2016 IPR006976 VanZ-like NIDE_RS13105 5fe47f2c9e28731d50e6a32a29dc5ed4 296 SUPERFAMILY SSF88713 2 80 8.9E-34 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS13105 5fe47f2c9e28731d50e6a32a29dc5ed4 296 SUPERFAMILY SSF88713 173 251 8.9E-34 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS13105 5fe47f2c9e28731d50e6a32a29dc5ed4 296 PANTHER PTHR34216 168 290 3.3E-43 T 23-04-2016 NIDE_RS13105 5fe47f2c9e28731d50e6a32a29dc5ed4 296 PANTHER PTHR34216 1 94 3.3E-43 T 23-04-2016 NIDE_RS13105 5fe47f2c9e28731d50e6a32a29dc5ed4 296 Pfam PF01522 Polysaccharide deacetylase 40 249 1.3E-25 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS13105 5fe47f2c9e28731d50e6a32a29dc5ed4 296 Gene3D G3DSA:3.20.20.370 173 249 5.2E-27 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS13105 5fe47f2c9e28731d50e6a32a29dc5ed4 296 Gene3D G3DSA:3.20.20.370 13 80 5.2E-27 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 NIDE_RS12090 798146c8f4ac9cee0ece221bc9872cf9 80 SUPERFAMILY SSF48695 37 79 1.29E-6 T 23-04-2016 IPR011031 Multihaem cytochrome NIDE_RS12090 798146c8f4ac9cee0ece221bc9872cf9 80 Gene3D G3DSA:3.90.10.10 29 77 1.1E-5 T 23-04-2016 NIDE_RS16560 f0cabce0858bd48f0cf76a8cc1aaaf21 156 SUPERFAMILY SSF55729 1 150 2.96E-22 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS16560 f0cabce0858bd48f0cf76a8cc1aaaf21 156 Gene3D G3DSA:3.40.630.30 5 143 3.6E-26 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS16560 f0cabce0858bd48f0cf76a8cc1aaaf21 156 Pfam PF13673 Acetyltransferase (GNAT) domain 36 147 1.0E-8 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS00615 feabd959d84eb9d1f8e05eb05bec8afa 987 Pfam PF06634 Protein of unknown function (DUF1156) 26 88 8.9E-16 T 23-04-2016 IPR009537 Domain of unknown function DUF1156 NIDE_RS00615 feabd959d84eb9d1f8e05eb05bec8afa 987 Gene3D G3DSA:3.40.50.150 197 253 1.1E-4 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00615 feabd959d84eb9d1f8e05eb05bec8afa 987 Gene3D G3DSA:3.40.50.150 576 611 1.1E-4 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00615 feabd959d84eb9d1f8e05eb05bec8afa 987 Gene3D G3DSA:3.40.50.150 646 674 1.1E-4 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00615 feabd959d84eb9d1f8e05eb05bec8afa 987 SUPERFAMILY SSF53335 593 612 1.56E-5 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00615 feabd959d84eb9d1f8e05eb05bec8afa 987 SUPERFAMILY SSF53335 647 729 1.56E-5 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS18175 0cc41809dea77a578e5af5b98f5bb4b5 59 SUPERFAMILY SSF46955 13 59 3.6E-10 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS18175 0cc41809dea77a578e5af5b98f5bb4b5 59 Gene3D G3DSA:1.10.1660.10 13 49 3.1E-5 T 23-04-2016 NIDE_RS18175 0cc41809dea77a578e5af5b98f5bb4b5 59 Pfam PF12728 Helix-turn-helix domain 13 59 1.5E-11 T 23-04-2016 NIDE_RS18175 0cc41809dea77a578e5af5b98f5bb4b5 59 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 13 59 5.0E-12 T 23-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 NIDE_RS07335 bad74c6980a084904d24df3055890991 257 PANTHER PTHR38462 2 251 5.4E-44 T 23-04-2016 NIDE_RS07335 bad74c6980a084904d24df3055890991 257 Gene3D G3DSA:3.30.420.10 88 243 6.5E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS07335 bad74c6980a084904d24df3055890991 257 Pfam PF13482 RNase_H superfamily 88 241 7.8E-30 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS07335 bad74c6980a084904d24df3055890991 257 SUPERFAMILY SSF53098 88 244 2.99E-20 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS15380 3d1d45cc379254fb37a4f1e1334f43fa 234 Pfam PF01618 MotA/TolQ/ExbB proton channel family 107 211 8.7E-34 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 NIDE_RS15380 3d1d45cc379254fb37a4f1e1334f43fa 234 PANTHER PTHR30625 7 230 1.1E-46 T 23-04-2016 NIDE_RS01910 151246d989ba8b167dcc6893d04414ed 65 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 14 58 1.9E-17 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS02725 f21c18713476694efcdeb681681999a1 326 Pfam PF01179 Copper amine oxidase, enzyme domain 27 84 2.6E-6 T 23-04-2016 IPR015798 Copper amine oxidase, C-terminal GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 NIDE_RS02725 f21c18713476694efcdeb681681999a1 326 SUPERFAMILY SSF49998 27 321 4.06E-17 T 23-04-2016 IPR015798 Copper amine oxidase, C-terminal GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 NIDE_RS02725 f21c18713476694efcdeb681681999a1 326 Gene3D G3DSA:2.70.98.20 27 116 6.0E-11 T 23-04-2016 IPR015798 Copper amine oxidase, C-terminal GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 NIDE_RS02725 f21c18713476694efcdeb681681999a1 326 Gene3D G3DSA:2.70.98.20 119 311 1.7E-7 T 23-04-2016 IPR015798 Copper amine oxidase, C-terminal GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 NIDE_RS15920 0f910b25d5bb33fe890c05a25009ddd9 161 PANTHER PTHR33990:SF2 1 161 9.0E-67 T 23-04-2016 NIDE_RS15920 0f910b25d5bb33fe890c05a25009ddd9 161 PANTHER PTHR33990 1 161 9.0E-67 T 23-04-2016 NIDE_RS15920 0f910b25d5bb33fe890c05a25009ddd9 161 Gene3D G3DSA:3.10.180.10 1 132 3.2E-46 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS15920 0f910b25d5bb33fe890c05a25009ddd9 161 PIRSF PIRSF021700 1 160 7.6E-54 T 23-04-2016 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase NIDE_RS15920 0f910b25d5bb33fe890c05a25009ddd9 161 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 2 120 3.0E-45 T 23-04-2016 IPR028973 3-demethylubiquinone-9 3-methyltransferase NIDE_RS15920 0f910b25d5bb33fe890c05a25009ddd9 161 SUPERFAMILY SSF54593 3 158 4.39E-42 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS03070 076ccf99c09a9141bb7cfda4f5c93817 388 PANTHER PTHR30489 4 387 8.2E-67 T 23-04-2016 NIDE_RS03070 076ccf99c09a9141bb7cfda4f5c93817 388 PANTHER PTHR30489:SF11 4 387 8.2E-67 T 23-04-2016 NIDE_RS03070 076ccf99c09a9141bb7cfda4f5c93817 388 Pfam PF02687 FtsX-like permease family 270 379 5.1E-20 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS19990 0d2fdfd441fa2b246e446f1aeee8456e 491 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 7 477 45.891 T 23-04-2016 IPR003846 Uncharacterised protein family UPF0061 NIDE_RS19990 0d2fdfd441fa2b246e446f1aeee8456e 491 PANTHER PTHR32057 11 491 9.0E-204 T 23-04-2016 NIDE_RS19990 0d2fdfd441fa2b246e446f1aeee8456e 491 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 8 460 2.3E-152 T 23-04-2016 IPR003846 Uncharacterised protein family UPF0061 NIDE_RS09730 df0b5a93cfefc3d2a19258ce2e78b9d1 127 SUPERFAMILY SSF54909 38 101 1.94E-10 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel NIDE_RS09730 df0b5a93cfefc3d2a19258ce2e78b9d1 127 Gene3D G3DSA:3.30.70.900 37 101 1.0E-8 T 23-04-2016 NIDE_RS09730 df0b5a93cfefc3d2a19258ce2e78b9d1 127 Pfam PF03992 Antibiotic biosynthesis monooxygenase 40 101 5.3E-5 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain NIDE_RS04360 5a3c0e2bd835ad603acef098c5e225ae 133 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 9 133 5.8E-29 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 NIDE_RS04360 5a3c0e2bd835ad603acef098c5e225ae 133 Gene3D G3DSA:2.60.120.460 2 133 1.5E-39 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 NIDE_RS04360 5a3c0e2bd835ad603acef098c5e225ae 133 SUPERFAMILY SSF111038 3 133 8.11E-37 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 NIDE_RS04360 5a3c0e2bd835ad603acef098c5e225ae 133 PANTHER PTHR30615 13 133 4.0E-32 T 23-04-2016 NIDE_RS04360 5a3c0e2bd835ad603acef098c5e225ae 133 Pfam PF01894 Uncharacterised protein family UPF0047 13 130 4.5E-34 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 NIDE_RS04360 5a3c0e2bd835ad603acef098c5e225ae 133 PIRSF PIRSF004681 1 133 4.5E-37 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 NIDE_RS10620 b8c5f08dc04175453aaf4410195c7e02 289 Gene3D G3DSA:1.20.1330.10 48 161 2.7E-31 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NIDE_RS10620 b8c5f08dc04175453aaf4410195c7e02 289 Gene3D G3DSA:1.20.1330.10 193 245 2.7E-31 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NIDE_RS10620 b8c5f08dc04175453aaf4410195c7e02 289 SUPERFAMILY SSF64518 3 289 1.05E-62 T 23-04-2016 NIDE_RS10620 b8c5f08dc04175453aaf4410195c7e02 289 Pfam PF00700 Bacterial flagellin C-terminal helical region 207 288 1.3E-8 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NIDE_RS10620 b8c5f08dc04175453aaf4410195c7e02 289 PANTHER PTHR30244:SF5 1 289 2.9E-52 T 23-04-2016 NIDE_RS10620 b8c5f08dc04175453aaf4410195c7e02 289 Pfam PF00669 Bacterial flagellin N-terminal helical region 6 133 2.5E-19 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 NIDE_RS10620 b8c5f08dc04175453aaf4410195c7e02 289 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 5 180 9.1E-49 T 23-04-2016 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 NIDE_RS10620 b8c5f08dc04175453aaf4410195c7e02 289 PANTHER PTHR30244 1 289 2.9E-52 T 23-04-2016 NIDE_RS08820 11c8594b0355a54917ab75919e2ccceb 142 SUPERFAMILY SSF49503 22 134 1.48E-9 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS08820 11c8594b0355a54917ab75919e2ccceb 142 Gene3D G3DSA:2.60.40.420 21 134 1.3E-11 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS08820 11c8594b0355a54917ab75919e2ccceb 142 Pfam PF13473 Cupredoxin-like domain 17 134 7.2E-11 T 23-04-2016 IPR028096 EfeO-type cupredoxin-like domain NIDE_RS13350 1cd124ddf87a14074af3c84dd9a5c5e5 133 Pfam PF06103 Bacterial protein of unknown function (DUF948) 5 92 1.0E-17 T 23-04-2016 IPR009293 Uncharacterised protein family UPF0478 NIDE_RS04395 b435ede6568681c35bac866baad1b703 496 PANTHER PTHR42307 61 175 1.2E-75 T 23-04-2016 NIDE_RS04395 b435ede6568681c35bac866baad1b703 496 PANTHER PTHR42307 198 435 1.2E-75 T 23-04-2016 NIDE_RS04395 b435ede6568681c35bac866baad1b703 496 Pfam PF03136 Pup-ligase protein 4 439 1.7E-131 T 23-04-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 NIDE_RS15145 75f2233514c6774820ad0b91aed0c8e1 340 Gene3D G3DSA:2.60.40.1080 193 241 4.1E-5 T 23-04-2016 NIDE_RS15145 75f2233514c6774820ad0b91aed0c8e1 340 SUPERFAMILY SSF49299 246 340 2.35E-5 T 23-04-2016 IPR000601 PKD domain NIDE_RS15145 75f2233514c6774820ad0b91aed0c8e1 340 Gene3D G3DSA:2.60.40.670 247 339 6.7E-4 T 23-04-2016 IPR000601 PKD domain NIDE_RS11450 10a181cc655153166436ca74f4680585 509 PANTHER PTHR30619 248 286 6.0E-20 T 23-04-2016 NIDE_RS11450 10a181cc655153166436ca74f4680585 509 PANTHER PTHR30619 322 397 6.0E-20 T 23-04-2016 NIDE_RS11450 10a181cc655153166436ca74f4680585 509 PANTHER PTHR30619 90 185 6.0E-20 T 23-04-2016 NIDE_RS11450 10a181cc655153166436ca74f4680585 509 SUPERFAMILY SSF56281 90 162 4.06E-22 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS11450 10a181cc655153166436ca74f4680585 509 SUPERFAMILY SSF56281 196 284 4.06E-22 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS11450 10a181cc655153166436ca74f4680585 509 SUPERFAMILY SSF56281 324 382 4.06E-22 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS11450 10a181cc655153166436ca74f4680585 509 Pfam PF00753 Metallo-beta-lactamase superfamily 103 164 1.7E-7 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS11450 10a181cc655153166436ca74f4680585 509 PANTHER PTHR30619:SF2 248 286 6.0E-20 T 23-04-2016 NIDE_RS11450 10a181cc655153166436ca74f4680585 509 PANTHER PTHR30619:SF2 322 397 6.0E-20 T 23-04-2016 NIDE_RS11450 10a181cc655153166436ca74f4680585 509 PANTHER PTHR30619:SF2 90 185 6.0E-20 T 23-04-2016 NIDE_RS11450 10a181cc655153166436ca74f4680585 509 Gene3D G3DSA:3.60.15.10 299 398 7.0E-17 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS11450 10a181cc655153166436ca74f4680585 509 Gene3D G3DSA:3.60.15.10 220 221 7.0E-17 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS11450 10a181cc655153166436ca74f4680585 509 Gene3D G3DSA:3.60.15.10 90 184 7.0E-17 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS20400 4502b529ab779422338ab902f076955f 206 PANTHER PTHR37530 21 194 2.9E-33 T 23-04-2016 NIDE_RS20400 4502b529ab779422338ab902f076955f 206 Pfam PF03843 Outer membrane lipoprotein Slp family 40 184 3.2E-42 T 23-04-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 NIDE_RS07230 c8f9244b4feb90a6f8d45e5bb80f86c9 394 SUPERFAMILY SSF50969 57 380 2.9E-18 T 23-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like NIDE_RS07230 c8f9244b4feb90a6f8d45e5bb80f86c9 394 Gene3D G3DSA:2.130.10.10 48 380 2.8E-18 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 NIDE_RS00100 d4adef4e370d7aaf8d9ee7cc0ee713c3 113 SUPERFAMILY SSF46626 9 109 5.59E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS00100 d4adef4e370d7aaf8d9ee7cc0ee713c3 113 Gene3D G3DSA:1.10.760.10 42 112 6.4E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS00100 d4adef4e370d7aaf8d9ee7cc0ee713c3 113 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 42 106 4.9E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS01340 b51ff6156335cf376806d790a4aad919 131 Pfam PF02486 Replication initiation factor 14 125 1.7E-20 T 23-04-2016 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 NIDE_RS14530 2726fd8a0a162fff56b19cf2649856a1 412 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 138 366 3.1E-12 T 23-04-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 NIDE_RS14530 2726fd8a0a162fff56b19cf2649856a1 412 SUPERFAMILY SSF51445 108 365 3.62E-27 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS14530 2726fd8a0a162fff56b19cf2649856a1 412 Gene3D G3DSA:3.20.20.80 141 338 3.5E-21 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 NIDE_RS08870 1086da176f5608dddb32ff050945ab10 123 Pfam PF14271 Domain of unknown function (DUF4359) 18 107 4.6E-7 T 23-04-2016 IPR025578 Protein of unknown function DUF4359 NIDE_RS07280 a7d9a7a0d003ca458aa08e6f37eb01e0 807 Gene3D G3DSA:2.60.450.10 27 153 8.5E-18 T 23-04-2016 NIDE_RS07280 a7d9a7a0d003ca458aa08e6f37eb01e0 807 Pfam PF04453 Organic solvent tolerance protein 288 549 3.8E-18 T 23-04-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 NIDE_RS07280 a7d9a7a0d003ca458aa08e6f37eb01e0 807 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 4 758 14.196 T 23-04-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 NIDE_RS07280 a7d9a7a0d003ca458aa08e6f37eb01e0 807 PANTHER PTHR30189 1 804 2.6E-40 T 23-04-2016 NIDE_RS09345 90b8b9affa8a20986f16da9a79e4edd2 210 Gene3D G3DSA:3.20.20.70 3 206 3.2E-70 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS09345 90b8b9affa8a20986f16da9a79e4edd2 210 PANTHER PTHR22854 3 209 1.4E-67 T 23-04-2016 NIDE_RS09345 90b8b9affa8a20986f16da9a79e4edd2 210 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 208 39.479 T 23-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 NIDE_RS09345 90b8b9affa8a20986f16da9a79e4edd2 210 PANTHER PTHR22854:SF6 3 209 1.4E-67 T 23-04-2016 NIDE_RS09345 90b8b9affa8a20986f16da9a79e4edd2 210 SUPERFAMILY SSF51366 4 206 1.26E-59 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 NIDE_RS09345 90b8b9affa8a20986f16da9a79e4edd2 210 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 203 1.6E-46 T 23-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 NIDE_RS21095 8c38c9697a5bac39206864b6a049d769 132 ProSitePatterns PS00987 6-pyruvoyl tetrahydropterin synthase signature 1. 35 45 - T 23-04-2016 IPR022470 6-pyruvoyl tetrahydropterin synthase, cysteine active site GO:0003874|GO:0006729 KEGG: 00790+4.2.3.12|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00849 NIDE_RS21095 8c38c9697a5bac39206864b6a049d769 132 PANTHER PTHR12589 1 128 1.3E-41 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein NIDE_RS21095 8c38c9697a5bac39206864b6a049d769 132 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 7 131 9.7E-31 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein NIDE_RS21095 8c38c9697a5bac39206864b6a049d769 132 SUPERFAMILY SSF55620 4 131 1.0E-37 T 23-04-2016 NIDE_RS21095 8c38c9697a5bac39206864b6a049d769 132 Gene3D G3DSA:3.30.479.10 4 131 7.1E-40 T 23-04-2016 NIDE_RS02380 295d4e57197722f34fd11cee93c653e4 378 Gene3D G3DSA:2.40.370.10 238 374 1.1E-45 T 23-04-2016 IPR023374 AttH-like domain NIDE_RS02380 295d4e57197722f34fd11cee93c653e4 378 SUPERFAMILY SSF159245 34 370 1.44E-107 T 23-04-2016 NIDE_RS02380 295d4e57197722f34fd11cee93c653e4 378 Gene3D G3DSA:2.40.370.10 45 233 9.5E-65 T 23-04-2016 IPR023374 AttH-like domain NIDE_RS02380 295d4e57197722f34fd11cee93c653e4 378 Pfam PF07143 CrtC N-terminal lipocalin domain 57 232 5.9E-58 T 23-04-2016 IPR010791 AttH domain NIDE_RS02380 295d4e57197722f34fd11cee93c653e4 378 Pfam PF17186 Lipocalin-like domain 237 370 1.9E-43 T 23-04-2016 IPR033451 AttH, lipocalin-like domain NIDE_RS02380 295d4e57197722f34fd11cee93c653e4 378 PANTHER PTHR38591 31 375 1.2E-102 T 23-04-2016 NIDE_RS15945 e9a55307a0abee6e798487709980582f 137 PANTHER PTHR33993 19 136 4.9E-29 T 23-04-2016 NIDE_RS15945 e9a55307a0abee6e798487709980582f 137 SUPERFAMILY SSF54593 18 131 2.75E-16 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS15945 e9a55307a0abee6e798487709980582f 137 Gene3D G3DSA:3.10.180.10 19 134 3.3E-30 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS07465 f33fd4fae60bf3440b40cd66dfc4c185 351 Pfam PF13531 Bacterial extracellular solute-binding protein 39 299 2.6E-43 T 23-04-2016 NIDE_RS07465 f33fd4fae60bf3440b40cd66dfc4c185 351 PANTHER PTHR30368 12 350 1.3E-100 T 23-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 NIDE_RS07465 f33fd4fae60bf3440b40cd66dfc4c185 351 PANTHER PTHR30368:SF2 12 350 1.3E-100 T 23-04-2016 NIDE_RS07465 f33fd4fae60bf3440b40cd66dfc4c185 351 SUPERFAMILY SSF53850 33 344 2.61E-59 T 23-04-2016 NIDE_RS07465 f33fd4fae60bf3440b40cd66dfc4c185 351 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 30 343 9.6E-61 T 23-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 NIDE_RS07465 f33fd4fae60bf3440b40cd66dfc4c185 351 Gene3D G3DSA:3.40.190.10 136 296 5.3E-47 T 23-04-2016 NIDE_RS07465 f33fd4fae60bf3440b40cd66dfc4c185 351 Gene3D G3DSA:3.40.190.10 35 135 2.7E-11 T 23-04-2016 NIDE_RS14270 31a942b0c534b8f82b49780066314bbb 330 SUPERFAMILY SSF52922 192 327 5.76E-41 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS14270 31a942b0c534b8f82b49780066314bbb 330 SMART SM00861 10 183 4.3E-64 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain NIDE_RS14270 31a942b0c534b8f82b49780066314bbb 330 Gene3D G3DSA:3.40.50.920 199 327 1.3E-43 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 NIDE_RS14270 31a942b0c534b8f82b49780066314bbb 330 SUPERFAMILY SSF52518 9 196 6.38E-69 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS14270 31a942b0c534b8f82b49780066314bbb 330 Pfam PF02779 Transketolase, pyrimidine binding domain 9 182 4.2E-45 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain NIDE_RS14270 31a942b0c534b8f82b49780066314bbb 330 PANTHER PTHR11624 7 327 2.8E-151 T 23-04-2016 IPR033247 Transketolase family NIDE_RS14270 31a942b0c534b8f82b49780066314bbb 330 Gene3D G3DSA:3.40.50.970 8 198 1.1E-83 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS14270 31a942b0c534b8f82b49780066314bbb 330 Pfam PF02780 Transketolase, C-terminal domain 198 320 4.7E-41 T 23-04-2016 IPR033248 Transketolase, C-terminal domain NIDE_RS03220 99d421c31855fd52829695aa0a2f3b58 327 SUPERFAMILY SSF51735 1 262 6.68E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03220 99d421c31855fd52829695aa0a2f3b58 327 SUPERFAMILY SSF51735 291 325 6.68E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03220 99d421c31855fd52829695aa0a2f3b58 327 PANTHER PTHR10366 2 258 2.2E-83 T 23-04-2016 NIDE_RS03220 99d421c31855fd52829695aa0a2f3b58 327 PANTHER PTHR10366 281 326 2.2E-83 T 23-04-2016 NIDE_RS03220 99d421c31855fd52829695aa0a2f3b58 327 PANTHER PTHR10366:SF124 2 258 2.2E-83 T 23-04-2016 NIDE_RS03220 99d421c31855fd52829695aa0a2f3b58 327 PANTHER PTHR10366:SF124 281 326 2.2E-83 T 23-04-2016 NIDE_RS03220 99d421c31855fd52829695aa0a2f3b58 327 TIGRFAM TIGR03466 HpnA: hopanoid-associated sugar epimerase 1 326 1.3E-143 T 23-04-2016 IPR017829 Hopanoid-associated sugar epimerase KEGG: 00040+1.1.1.21|KEGG: 00051+1.1.1.21|KEGG: 00052+1.1.1.21|KEGG: 00561+1.1.1.21|KEGG: 00941+1.1.1.219|MetaCyc: PWY-5152|MetaCyc: PWY-5515|MetaCyc: PWY-6693|UniPathway: UPA00154 NIDE_RS03220 99d421c31855fd52829695aa0a2f3b58 327 Gene3D G3DSA:3.40.50.720 1 318 6.4E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS03220 99d421c31855fd52829695aa0a2f3b58 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 229 2.8E-32 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 NIDE_RS05065 198e44c46deb3ee43397b7aa1f44f2b9 226 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 1 220 31.615 T 23-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 NIDE_RS05065 198e44c46deb3ee43397b7aa1f44f2b9 226 Pfam PF01467 Cytidylyltransferase-like 5 194 7.1E-29 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NIDE_RS05065 198e44c46deb3ee43397b7aa1f44f2b9 226 Gene3D G3DSA:3.40.50.620 1 223 9.1E-66 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS05065 198e44c46deb3ee43397b7aa1f44f2b9 226 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 66 4.0E-8 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 NIDE_RS05065 198e44c46deb3ee43397b7aa1f44f2b9 226 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 5 219 3.6E-52 T 23-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 NIDE_RS05065 198e44c46deb3ee43397b7aa1f44f2b9 226 SUPERFAMILY SSF52374 1 220 5.91E-50 T 23-04-2016 NIDE_RS05065 198e44c46deb3ee43397b7aa1f44f2b9 226 PANTHER PTHR12039 1 225 1.0E-45 T 23-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 NIDE_RS17355 fb987c3be929b2b042d0183ef0cfd613 212 Pfam PF09997 Predicted membrane protein (DUF2238) 42 180 7.4E-49 T 23-04-2016 IPR014509 Uncharacterised conserved protein UCP020606 NIDE_RS17355 fb987c3be929b2b042d0183ef0cfd613 212 PIRSF PIRSF020606 2 202 8.4E-56 T 23-04-2016 IPR014509 Uncharacterised conserved protein UCP020606 NIDE_RS21180 5342f169101faf69f20970785dadc7f1 412 Gene3D G3DSA:3.40.50.1110 333 403 2.5E-24 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS21180 5342f169101faf69f20970785dadc7f1 412 Gene3D G3DSA:3.40.50.1110 235 267 2.5E-24 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS21180 5342f169101faf69f20970785dadc7f1 412 Gene3D G3DSA:3.40.50.1110 98 172 2.5E-24 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS21180 5342f169101faf69f20970785dadc7f1 412 SUPERFAMILY SSF52266 236 267 2.48E-24 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS21180 5342f169101faf69f20970785dadc7f1 412 SUPERFAMILY SSF52266 98 173 2.48E-24 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS21180 5342f169101faf69f20970785dadc7f1 412 SUPERFAMILY SSF52266 337 403 2.48E-24 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS21180 5342f169101faf69f20970785dadc7f1 412 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 101 281 3.2E-12 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS01590 6801736ad8442462966c0223c4dbb33d 331 PANTHER PTHR31620 62 178 1.7E-18 T 23-04-2016 NIDE_RS01590 6801736ad8442462966c0223c4dbb33d 331 SUPERFAMILY SSF159501 43 320 4.32E-48 T 23-04-2016 NIDE_RS01590 6801736ad8442462966c0223c4dbb33d 331 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 62 278 4.1E-52 T 23-04-2016 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN NIDE_RS01590 6801736ad8442462966c0223c4dbb33d 331 PANTHER PTHR31620:SF8 62 178 1.7E-18 T 23-04-2016 NIDE_RS07750 bd1a862b2dce87d82413a8f9e2da6ef7 432 PANTHER PTHR30469 74 401 5.4E-64 T 23-04-2016 NIDE_RS07750 bd1a862b2dce87d82413a8f9e2da6ef7 432 PANTHER PTHR30469:SF4 74 401 5.4E-64 T 23-04-2016 NIDE_RS07750 bd1a862b2dce87d82413a8f9e2da6ef7 432 Gene3D G3DSA:2.40.50.100 196 222 1.5E-9 T 23-04-2016 NIDE_RS07750 bd1a862b2dce87d82413a8f9e2da6ef7 432 Gene3D G3DSA:2.40.50.100 101 133 1.5E-9 T 23-04-2016 NIDE_RS07750 bd1a862b2dce87d82413a8f9e2da6ef7 432 SUPERFAMILY SSF111369 88 314 9.02E-28 T 23-04-2016 NIDE_RS07750 bd1a862b2dce87d82413a8f9e2da6ef7 432 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 75 390 4.6E-56 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS07750 bd1a862b2dce87d82413a8f9e2da6ef7 432 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 103 310 1.2E-22 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS00945 205a7da104fbb6871608484ad26b362c 138 Pfam PF12680 SnoaL-like domain 22 105 9.4E-13 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain NIDE_RS00945 205a7da104fbb6871608484ad26b362c 138 SUPERFAMILY SSF54427 4 115 4.15E-18 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS00945 205a7da104fbb6871608484ad26b362c 138 Gene3D G3DSA:3.10.450.50 23 122 1.0E-12 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS07185 c12f71e01dbadb04d2ac64b221f4c680 221 Pfam PF13439 Glycosyltransferase Family 4 22 116 4.4E-13 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS07185 c12f71e01dbadb04d2ac64b221f4c680 221 SUPERFAMILY SSF53756 2 122 3.37E-10 T 23-04-2016 NIDE_RS18890 ba27ff264384b4250513e5f16dddba3d 159 SUPERFAMILY SSF49503 68 148 3.49E-5 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS18890 ba27ff264384b4250513e5f16dddba3d 159 Gene3D G3DSA:2.60.40.420 67 151 8.6E-4 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS06470 bafe880b836b4cf8dac0cf43da2820d0 105 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 34 100 2.6E-16 T 23-04-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 NIDE_RS13690 49cd42a4cff99e29960186453c5f85cb 436 SUPERFAMILY SSF53756 120 424 9.94E-24 T 23-04-2016 NIDE_RS13690 49cd42a4cff99e29960186453c5f85cb 436 SUPERFAMILY SSF53756 7 71 9.94E-24 T 23-04-2016 NIDE_RS14305 651636b0fcfb82995d6685523f9196dd 534 PANTHER PTHR22855 1 534 0.0 T 23-04-2016 NIDE_RS14305 651636b0fcfb82995d6685523f9196dd 534 SUPERFAMILY SSF52096 237 516 4.5E-77 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS14305 651636b0fcfb82995d6685523f9196dd 534 PANTHER PTHR22855:SF35 1 534 0.0 T 23-04-2016 NIDE_RS14305 651636b0fcfb82995d6685523f9196dd 534 Gene3D G3DSA:3.90.226.10 275 528 1.5E-82 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS14305 651636b0fcfb82995d6685523f9196dd 534 Gene3D G3DSA:3.90.226.10 29 271 7.2E-74 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS14305 651636b0fcfb82995d6685523f9196dd 534 SUPERFAMILY SSF52096 26 269 1.14E-67 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS14305 651636b0fcfb82995d6685523f9196dd 534 Pfam PF01039 Carboxyl transferase domain 49 524 3.7E-141 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 NIDE_RS02950 f13844f265808afd39f65b8a8616c593 64 SUPERFAMILY SSF46955 5 58 1.19E-7 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS02950 f13844f265808afd39f65b8a8616c593 64 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 5 51 2.5E-12 T 23-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 NIDE_RS02950 f13844f265808afd39f65b8a8616c593 64 Gene3D G3DSA:1.10.10.10 6 46 9.8E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS02950 f13844f265808afd39f65b8a8616c593 64 Pfam PF12728 Helix-turn-helix domain 5 55 4.0E-11 T 23-04-2016 NIDE_RS12370 67341325a48685b5ef20b4d8e6b55a2b 412 Pfam PF00534 Glycosyl transferases group 1 194 361 7.5E-26 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS12370 67341325a48685b5ef20b4d8e6b55a2b 412 Pfam PF13579 Glycosyl transferase 4-like domain 26 171 3.0E-20 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS12370 67341325a48685b5ef20b4d8e6b55a2b 412 Gene3D G3DSA:3.40.50.2000 189 359 9.3E-25 T 23-04-2016 NIDE_RS12370 67341325a48685b5ef20b4d8e6b55a2b 412 PANTHER PTHR12526 25 384 5.2E-53 T 23-04-2016 NIDE_RS12370 67341325a48685b5ef20b4d8e6b55a2b 412 SUPERFAMILY SSF53756 18 379 2.55E-72 T 23-04-2016 NIDE_RS14330 7dd328c66e3fdb890f9f4caace0298c3 313 Gene3D G3DSA:3.20.20.60 8 286 4.1E-89 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS14330 7dd328c66e3fdb890f9f4caace0298c3 313 Pfam PF13714 Phosphoenolpyruvate phosphomutase 14 259 8.6E-51 T 23-04-2016 NIDE_RS14330 7dd328c66e3fdb890f9f4caace0298c3 313 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 10 286 2.6E-107 T 23-04-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747|UniPathway: UPA00946 NIDE_RS14330 7dd328c66e3fdb890f9f4caace0298c3 313 ProSitePatterns PS00161 Isocitrate lyase signature. 121 126 - T 23-04-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 NIDE_RS14330 7dd328c66e3fdb890f9f4caace0298c3 313 PANTHER PTHR21631:SF4 8 286 3.0E-102 T 23-04-2016 NIDE_RS14330 7dd328c66e3fdb890f9f4caace0298c3 313 PANTHER PTHR21631 8 286 3.0E-102 T 23-04-2016 NIDE_RS14330 7dd328c66e3fdb890f9f4caace0298c3 313 SUPERFAMILY SSF51621 6 295 7.63E-88 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 NIDE_RS15415 d20853b02b4bfdeefd26cb89e841508d 171 SUPERFAMILY SSF103256 43 167 9.42E-27 T 23-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 NIDE_RS15415 d20853b02b4bfdeefd26cb89e841508d 171 Pfam PF02577 Bifunctional nuclease 40 161 8.3E-30 T 23-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 NIDE_RS15415 d20853b02b4bfdeefd26cb89e841508d 171 PANTHER PTHR15160 64 166 5.4E-13 T 23-04-2016 NIDE_RS09405 f947276e356ec7bb8a47f06b424f892c 113 Pfam PF07238 PilZ domain 8 100 2.0E-7 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS09405 f947276e356ec7bb8a47f06b424f892c 113 SUPERFAMILY SSF141371 8 105 5.49E-8 T 23-04-2016 NIDE_RS13270 00cc2615cd3049cc38033a80bed53d1b 132 Pfam PF07238 PilZ domain 51 110 2.6E-5 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS08170 628d26212830101555bda08c5e56cd9e 300 Pfam PF12760 Transposase zinc-ribbon domain 18 64 7.5E-13 T 23-04-2016 IPR024442 Transposase, zinc-ribbon NIDE_RS08170 628d26212830101555bda08c5e56cd9e 300 Pfam PF12762 ISXO2-like transposase domain 138 285 4.2E-39 T 23-04-2016 IPR024445 ISXO2-like transposase domain NIDE_RS08170 628d26212830101555bda08c5e56cd9e 300 SMART SM01126 138 285 5.1E-42 T 23-04-2016 IPR024445 ISXO2-like transposase domain NIDE_RS20180 4ad07acd173f3c856e451aa19c9b8a3d 155 Gene3D G3DSA:3.40.50.270 1 152 8.7E-24 T 23-04-2016 NIDE_RS20180 4ad07acd173f3c856e451aa19c9b8a3d 155 SMART SM00226 2 151 3.8E-7 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily NIDE_RS20180 4ad07acd173f3c856e451aa19c9b8a3d 155 SUPERFAMILY SSF52788 1 152 1.27E-22 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily NIDE_RS20180 4ad07acd173f3c856e451aa19c9b8a3d 155 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 121 4.1E-12 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily NIDE_RS05905 4f0d05d8ecb125915900553ef4e8fd24 456 Pfam PF14238 Domain of unknown function (DUF4340) 72 250 7.3E-25 T 23-04-2016 IPR025641 Domain of unknown function DUF4340 NIDE_RS17655 0649c986e05b550b4a333725e73321ac 312 SUPERFAMILY SSF52518 17 307 3.27E-64 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS17655 0649c986e05b550b4a333725e73321ac 312 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 52 217 2.7E-22 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 NIDE_RS17655 0649c986e05b550b4a333725e73321ac 312 Gene3D G3DSA:3.40.50.970 8 307 1.2E-64 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold NIDE_RS17655 0649c986e05b550b4a333725e73321ac 312 PANTHER PTHR32154 10 310 2.3E-86 T 23-04-2016 NIDE_RS18235 b6d6df64a21caefaf018934ed2991e83 250 TIGRFAM TIGR01543 proheadase_HK97: phage prohead protease, HK97 family 22 167 8.8E-37 T 23-04-2016 IPR006433 Prohead protease NIDE_RS18235 b6d6df64a21caefaf018934ed2991e83 250 Pfam PF04586 Caudovirus prohead serine protease 20 168 7.8E-43 T 23-04-2016 IPR006433 Prohead protease NIDE_RS01170 eb411c225df2ae416a464a16ec0b21e1 405 SUPERFAMILY SSF55920 150 386 1.96E-40 T 23-04-2016 IPR000994 Peptidase M24, structural domain NIDE_RS01170 eb411c225df2ae416a464a16ec0b21e1 405 PANTHER PTHR10804 135 383 4.6E-48 T 23-04-2016 NIDE_RS01170 eb411c225df2ae416a464a16ec0b21e1 405 Pfam PF00557 Metallopeptidase family M24 162 381 3.5E-35 T 23-04-2016 IPR000994 Peptidase M24, structural domain NIDE_RS01170 eb411c225df2ae416a464a16ec0b21e1 405 Gene3D G3DSA:3.90.230.10 151 388 3.9E-41 T 23-04-2016 IPR000994 Peptidase M24, structural domain NIDE_RS01170 eb411c225df2ae416a464a16ec0b21e1 405 PANTHER PTHR10804:SF109 135 383 4.6E-48 T 23-04-2016 NIDE_RS06550 5bcead71772d9dbaed475cd9691fbf9a 94 Gene3D G3DSA:2.60.40.420 7 85 1.5E-16 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS06550 5bcead71772d9dbaed475cd9691fbf9a 94 SUPERFAMILY SSF49503 2 87 1.04E-16 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS10230 6e93b01cbe30b0a9ebd09098ff26d7e8 827 TIGRFAM TIGR02243 TIGR02243: putative baseplate assembly protein 513 781 2.3E-59 T 23-04-2016 IPR011749 Conserved hypothetical protein CHP02243 NIDE_RS10230 6e93b01cbe30b0a9ebd09098ff26d7e8 827 Pfam PF04865 Baseplate J-like protein 578 742 6.8E-10 T 23-04-2016 IPR006949 Baseplate protein J-like NIDE_RS13155 c695c12d24241c94f41330755a7f195e 302 SUPERFAMILY SSF53448 2 217 2.81E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13155 c695c12d24241c94f41330755a7f195e 302 Pfam PF00535 Glycosyl transferase family 2 5 111 2.8E-36 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS13155 c695c12d24241c94f41330755a7f195e 302 Gene3D G3DSA:3.90.550.10 2 218 3.8E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13155 c695c12d24241c94f41330755a7f195e 302 PANTHER PTHR22916 1 290 1.0E-58 T 23-04-2016 NIDE_RS05550 a02b64532da37ec8648a3126e045cd38 228 Gene3D G3DSA:3.40.30.10 60 224 1.1E-34 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS05550 a02b64532da37ec8648a3126e045cd38 228 Pfam PF08534 Redoxin 75 215 6.5E-16 T 23-04-2016 IPR013740 Redoxin GO:0016491 NIDE_RS05550 a02b64532da37ec8648a3126e045cd38 228 PANTHER PTHR10681:SF81 52 224 1.5E-32 T 23-04-2016 NIDE_RS05550 a02b64532da37ec8648a3126e045cd38 228 PANTHER PTHR10681 52 224 1.5E-32 T 23-04-2016 NIDE_RS05550 a02b64532da37ec8648a3126e045cd38 228 SUPERFAMILY SSF52833 60 219 1.68E-29 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS19095 10cae7df555c2f88f74f1a4f2d7c5f26 326 PANTHER PTHR30035 11 51 3.1E-46 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 NIDE_RS19095 10cae7df555c2f88f74f1a4f2d7c5f26 326 PANTHER PTHR30035 93 266 3.1E-46 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 NIDE_RS19095 10cae7df555c2f88f74f1a4f2d7c5f26 326 Pfam PF04333 MlaA lipoprotein 110 322 1.6E-66 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 NIDE_RS19095 10cae7df555c2f88f74f1a4f2d7c5f26 326 PRINTS PR01805 VacJ lipoprotein signature 111 124 4.2E-25 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 NIDE_RS19095 10cae7df555c2f88f74f1a4f2d7c5f26 326 PRINTS PR01805 VacJ lipoprotein signature 179 196 4.2E-25 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 NIDE_RS19095 10cae7df555c2f88f74f1a4f2d7c5f26 326 PRINTS PR01805 VacJ lipoprotein signature 128 144 4.2E-25 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 NIDE_RS19095 10cae7df555c2f88f74f1a4f2d7c5f26 326 PRINTS PR01805 VacJ lipoprotein signature 215 232 4.2E-25 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 NIDE_RS03715 e2922d34a6f744cfa8d1786d311bd7ac 343 SUPERFAMILY SSF101898 38 289 3.66E-26 T 23-04-2016 NIDE_RS03715 e2922d34a6f744cfa8d1786d311bd7ac 343 Gene3D G3DSA:2.120.10.30 46 294 8.2E-27 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like NIDE_RS05590 e63145ed995e727e473749a28e4ed6dd 292 SUPERFAMILY SSF103481 170 272 6.54E-14 T 23-04-2016 NIDE_RS05590 e63145ed995e727e473749a28e4ed6dd 292 Pfam PF00892 EamA-like transporter family 4 128 4.9E-14 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 NIDE_RS05590 e63145ed995e727e473749a28e4ed6dd 292 Pfam PF00892 EamA-like transporter family 136 269 1.6E-19 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 NIDE_RS05590 e63145ed995e727e473749a28e4ed6dd 292 PANTHER PTHR12715 1 269 4.5E-42 T 23-04-2016 NIDE_RS05590 e63145ed995e727e473749a28e4ed6dd 292 SUPERFAMILY SSF103481 35 130 3.53E-5 T 23-04-2016 NIDE_RS14450 b78b82d006d0585373049dd8fb29ec42 217 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 46 210 2.6E-18 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 NIDE_RS14450 b78b82d006d0585373049dd8fb29ec42 217 PANTHER PTHR30632 34 211 1.2E-17 T 23-04-2016 NIDE_RS14450 b78b82d006d0585373049dd8fb29ec42 217 Gene3D G3DSA:3.40.190.10 67 172 5.2E-13 T 23-04-2016 NIDE_RS14450 b78b82d006d0585373049dd8fb29ec42 217 Pfam PF13531 Bacterial extracellular solute-binding protein 1 211 1.0E-18 T 23-04-2016 NIDE_RS14450 b78b82d006d0585373049dd8fb29ec42 217 SUPERFAMILY SSF53850 33 213 3.02E-24 T 23-04-2016 NIDE_RS16425 aada8ab2a524dcf32fc87938bbf3435e 197 Pfam PF11845 Protein of unknown function (DUF3365) 43 195 1.4E-19 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS15530 c014e115a986a7d5671ac246decc0c07 314 PANTHER PTHR11807:SF3 1 309 4.6E-98 T 23-04-2016 NIDE_RS15530 c014e115a986a7d5671ac246decc0c07 314 Pfam PF01171 PP-loop family 52 227 7.4E-11 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal NIDE_RS15530 c014e115a986a7d5671ac246decc0c07 314 PIRSF PIRSF004976 1 314 4.5E-73 T 23-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 NIDE_RS15530 c014e115a986a7d5671ac246decc0c07 314 Gene3D G3DSA:3.40.50.620 33 222 8.8E-21 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIDE_RS15530 c014e115a986a7d5671ac246decc0c07 314 PANTHER PTHR11807 1 309 4.6E-98 T 23-04-2016 NIDE_RS15530 c014e115a986a7d5671ac246decc0c07 314 SUPERFAMILY SSF52402 27 247 6.58E-39 T 23-04-2016 NIDE_RS18165 88fbd772a9f962a41cb6ad811823319b 170 Pfam PF11220 Protein of unknown function (DUF3015) 25 165 3.3E-49 T 23-04-2016 IPR021383 Protein of unknown function DUF3015 NIDE_RS01755 fae61f2023fb9ead8ac06ff359a5733c 147 SUPERFAMILY SSF55729 17 130 8.68E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS01755 fae61f2023fb9ead8ac06ff359a5733c 147 PANTHER PTHR13355:SF5 25 136 2.7E-18 T 23-04-2016 NIDE_RS01755 fae61f2023fb9ead8ac06ff359a5733c 147 Gene3D G3DSA:3.40.630.30 18 132 6.5E-23 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS01755 fae61f2023fb9ead8ac06ff359a5733c 147 PANTHER PTHR13355 25 136 2.7E-18 T 23-04-2016 NIDE_RS01755 fae61f2023fb9ead8ac06ff359a5733c 147 Pfam PF00583 Acetyltransferase (GNAT) family 57 127 3.7E-9 T 23-04-2016 IPR000182 GNAT domain GO:0008080 NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 PANTHER PTHR23083 288 412 9.3E-15 T 23-04-2016 NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 Pfam PF00656 Caspase domain 20 243 3.9E-8 T 23-04-2016 NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 SMART SM00028 278 312 66.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 SMART SM00028 348 381 5.6E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 SMART SM00028 382 416 250.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 Pfam PF13432 Tetratricopeptide repeat 352 415 7.4E-7 T 23-04-2016 NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 Pfam PF13432 Tetratricopeptide repeat 287 348 4.3E-5 T 23-04-2016 NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 SUPERFAMILY SSF48452 280 413 1.97E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 Gene3D G3DSA:3.40.50.1460 19 148 3.7E-6 T 23-04-2016 IPR029030 Caspase-like domain NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 SUPERFAMILY SSF52129 18 246 6.07E-9 T 23-04-2016 IPR029030 Caspase-like domain NIDE_RS07555 3adb47eb4d445fcb41869eba30c80d6b 435 Gene3D G3DSA:1.25.40.10 287 415 3.1E-22 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19805 ce70e226bd6e926502f9e0435632e496 71 Pfam PF07866 Protein of unknown function (DUF1653) 5 64 1.4E-27 T 23-04-2016 IPR023387 DUF1653-like domain NIDE_RS19805 ce70e226bd6e926502f9e0435632e496 71 Gene3D G3DSA:2.30.30.320 2 68 1.3E-30 T 23-04-2016 IPR023387 DUF1653-like domain NIDE_RS14895 e115edfa4b274033b0c7f49979ab7be1 124 PANTHER PTHR37953:SF1 9 121 1.5E-29 T 23-04-2016 NIDE_RS14895 e115edfa4b274033b0c7f49979ab7be1 124 Pfam PF02643 Uncharacterized ACR, COG1430 12 120 7.9E-32 T 23-04-2016 IPR003795 Protein of unknown function DUF192 NIDE_RS14895 e115edfa4b274033b0c7f49979ab7be1 124 PANTHER PTHR37953 9 121 1.5E-29 T 23-04-2016 NIDE_RS02495 419b37d6da7437177517108d2a15f4c4 239 SUPERFAMILY SSF89392 39 232 1.96E-35 T 23-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX NIDE_RS02495 419b37d6da7437177517108d2a15f4c4 239 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 50 223 2.7E-25 T 23-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like NIDE_RS02495 419b37d6da7437177517108d2a15f4c4 239 Gene3D G3DSA:2.50.20.10 40 232 1.7E-43 T 23-04-2016 NIDE_RS02495 419b37d6da7437177517108d2a15f4c4 239 PANTHER PTHR35869 10 237 9.3E-31 T 23-04-2016 NIDE_RS13020 52959cbe8d8c7e27ce547465b4356f01 430 Pfam PF00665 Integrase core domain 133 259 7.6E-19 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 NIDE_RS13020 52959cbe8d8c7e27ce547465b4356f01 430 SUPERFAMILY SSF53098 133 298 8.16E-14 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS13020 52959cbe8d8c7e27ce547465b4356f01 430 PANTHER PTHR35004:SF2 20 397 4.0E-57 T 23-04-2016 NIDE_RS13020 52959cbe8d8c7e27ce547465b4356f01 430 PANTHER PTHR35004 20 397 4.0E-57 T 23-04-2016 NIDE_RS13020 52959cbe8d8c7e27ce547465b4356f01 430 Gene3D G3DSA:3.30.420.10 133 296 3.3E-12 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 NIDE_RS13980 74325d4f06208bf526152ad943dcb3bb 146 SMART SM00448 6 128 9.5E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS13980 74325d4f06208bf526152ad943dcb3bb 146 Gene3D G3DSA:3.40.50.2300 3 131 1.3E-34 T 23-04-2016 NIDE_RS13980 74325d4f06208bf526152ad943dcb3bb 146 Pfam PF00072 Response regulator receiver domain 8 128 7.8E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS13980 74325d4f06208bf526152ad943dcb3bb 146 SUPERFAMILY SSF52172 3 131 6.26E-33 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS13980 74325d4f06208bf526152ad943dcb3bb 146 PANTHER PTHR26402 6 129 5.9E-32 T 23-04-2016 NIDE_RS09830 28af1228240b76df52f366a2796874e1 121 Pfam PF07238 PilZ domain 3 94 6.5E-10 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS09830 28af1228240b76df52f366a2796874e1 121 SUPERFAMILY SSF141371 3 95 7.06E-13 T 23-04-2016 NIDE_RS09830 28af1228240b76df52f366a2796874e1 121 Gene3D G3DSA:2.40.10.220 23 102 3.2E-7 T 23-04-2016 NIDE_RS01140 091ce0c7c72d130f1986e4f118b748d0 156 Pfam PF06146 Phosphate-starvation-inducible E 55 101 9.2E-7 T 23-04-2016 IPR020948 Phosphate-starvation-induced PsiE-like NIDE_RS04645 ba4ee1699435d9728664088b99d10337 384 ProDom PD191273 TC0311 EXPORTED CT041 CPN0389/CP0366/CPJ0389/CPB0400 10 208 1.0E-4 T 23-04-2016 NIDE_RS04645 ba4ee1699435d9728664088b99d10337 384 PANTHER PTHR30032 104 374 2.3E-52 T 23-04-2016 NIDE_RS04645 ba4ee1699435d9728664088b99d10337 384 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 115 369 2.3E-69 T 23-04-2016 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 NIDE_RS04645 ba4ee1699435d9728664088b99d10337 384 Pfam PF08486 Stage II sporulation protein 111 199 1.1E-25 T 23-04-2016 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal NIDE_RS04645 ba4ee1699435d9728664088b99d10337 384 PANTHER PTHR30032:SF4 104 374 2.3E-52 T 23-04-2016 NIDE_RS16530 24e5c6e1861639d6ba75e026fe9c92d8 341 Pfam PF04338 Protein of unknown function, DUF481 131 340 1.9E-40 T 23-04-2016 IPR007433 Protein of unknown function DUF481 NIDE_RS02545 03131a1a3cceab0b40faa5c6fb53ad65 226 Pfam PF06051 Domain of Unknown Function (DUF928) 36 216 3.4E-36 T 23-04-2016 IPR010328 Protein of unknown function DUF928 NIDE_RS06480 5324792fe7187eeac52b59f3a7bb1d28 407 Pfam PF14907 Uncharacterised nucleotidyltransferase 40 289 2.2E-64 T 23-04-2016 NIDE_RS14205 67e5c9a6003cf173c510c0acc638721b 327 Gene3D G3DSA:1.10.260.40 23 86 6.1E-4 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS07255 8b3e0f9e6110137cb9b05ab3af26549e 235 Pfam PF03824 High-affinity nickel-transport protein 9 136 5.0E-7 T 23-04-2016 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 NIDE_RS09375 4c3fb6ed079737dba13c6cc2591301f7 222 PANTHER PTHR24220:SF111 3 219 1.4E-98 T 23-04-2016 NIDE_RS09375 4c3fb6ed079737dba13c6cc2591301f7 222 SUPERFAMILY SSF52540 1 221 2.95E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09375 4c3fb6ed079737dba13c6cc2591301f7 222 PANTHER PTHR24220 3 219 1.4E-98 T 23-04-2016 NIDE_RS09375 4c3fb6ed079737dba13c6cc2591301f7 222 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS09375 4c3fb6ed079737dba13c6cc2591301f7 222 SMART SM00382 30 222 1.4E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS09375 4c3fb6ed079737dba13c6cc2591301f7 222 Gene3D G3DSA:3.40.50.300 1 221 5.2E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09375 4c3fb6ed079737dba13c6cc2591301f7 222 Pfam PF00005 ABC transporter 21 169 1.2E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS20170 1281326e1ce0cb2e2151ec2464578a1a 196 Gene3D G3DSA:1.10.10.60 121 188 6.7E-18 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS20170 1281326e1ce0cb2e2151ec2464578a1a 196 SUPERFAMILY SSF46689 126 188 3.18E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS20170 1281326e1ce0cb2e2151ec2464578a1a 196 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 169 189 1.0E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS20170 1281326e1ce0cb2e2151ec2464578a1a 196 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 152 169 1.0E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS20170 1281326e1ce0cb2e2151ec2464578a1a 196 Pfam PF02954 Bacterial regulatory protein, Fis family 147 183 2.3E-12 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 NIDE_RS11655 f525c9a44081aefeaa5893879ee322cf 159 Pfam PF13664 Domain of unknown function (DUF4149) 6 112 1.7E-7 T 23-04-2016 IPR025423 Domain of unknown function DUF4149 NIDE_RS13645 1223fbac3f92b77c4b56348270ba8fe1 270 Pfam PF11306 Protein of unknown function (DUF3108) 37 262 1.3E-48 T 23-04-2016 IPR021457 Protein of unknown function DUF3108 NIDE_RS17395 0a199ab29bedaed017e7c9835b46b88d 636 Pfam PF07589 PEP-CTERM motif 602 624 9.9E-6 T 23-04-2016 IPR013424 PEP-CTERM protein-sorting domain NIDE_RS17395 0a199ab29bedaed017e7c9835b46b88d 636 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 602 625 1.1E-4 T 23-04-2016 IPR013424 PEP-CTERM protein-sorting domain NIDE_RS04560 201e007daef6026ddfbe7ffb445567e7 258 Pfam PF02591 C4-type zinc ribbon domain 199 230 2.5E-11 T 23-04-2016 IPR003743 C4-type zinc ribbon domain NIDE_RS04560 201e007daef6026ddfbe7ffb445567e7 258 PANTHER PTHR39082 1 242 2.4E-34 T 23-04-2016 NIDE_RS04890 eddedbfb52835367ac82ec818a9c01cc 137 SUPERFAMILY SSF52172 2 117 3.27E-9 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS04890 eddedbfb52835367ac82ec818a9c01cc 137 Gene3D G3DSA:3.40.50.2300 4 117 4.2E-8 T 23-04-2016 NIDE_RS18080 3755e19730e459a546e0a2072060bd7d 495 PANTHER PTHR30203:SF12 38 494 1.2E-55 T 23-04-2016 NIDE_RS18080 3755e19730e459a546e0a2072060bd7d 495 PANTHER PTHR30203 38 494 1.2E-55 T 23-04-2016 NIDE_RS18080 3755e19730e459a546e0a2072060bd7d 495 Gene3D G3DSA:1.20.1600.10 39 475 3.6E-43 T 23-04-2016 NIDE_RS18080 3755e19730e459a546e0a2072060bd7d 495 SUPERFAMILY SSF56954 159 475 1.7E-51 T 23-04-2016 NIDE_RS18080 3755e19730e459a546e0a2072060bd7d 495 SUPERFAMILY SSF56954 3 130 1.7E-51 T 23-04-2016 NIDE_RS18080 3755e19730e459a546e0a2072060bd7d 495 Pfam PF02321 Outer membrane efflux protein 117 264 3.0E-12 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS18080 3755e19730e459a546e0a2072060bd7d 495 Pfam PF02321 Outer membrane efflux protein 299 469 2.2E-15 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 NIDE_RS05045 ee3af261f7188620c4887b160df892d5 862 PANTHER PTHR30489 226 862 5.7E-100 T 23-04-2016 NIDE_RS05045 ee3af261f7188620c4887b160df892d5 862 PANTHER PTHR30489 4 184 5.7E-100 T 23-04-2016 NIDE_RS05045 ee3af261f7188620c4887b160df892d5 862 Pfam PF02687 FtsX-like permease family 254 377 1.9E-15 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS05045 ee3af261f7188620c4887b160df892d5 862 Pfam PF02687 FtsX-like permease family 738 853 7.9E-20 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS05045 ee3af261f7188620c4887b160df892d5 862 PANTHER PTHR30489:SF6 226 862 5.7E-100 T 23-04-2016 NIDE_RS05045 ee3af261f7188620c4887b160df892d5 862 PANTHER PTHR30489:SF6 4 184 5.7E-100 T 23-04-2016 NIDE_RS05045 ee3af261f7188620c4887b160df892d5 862 Pfam PF12704 MacB-like periplasmic core domain 488 696 2.8E-6 T 23-04-2016 IPR025857 MacB-like periplasmic core domain NIDE_RS05045 ee3af261f7188620c4887b160df892d5 862 Pfam PF12704 MacB-like periplasmic core domain 8 223 6.9E-11 T 23-04-2016 IPR025857 MacB-like periplasmic core domain NIDE_RS14325 7510b72791359cfc612152f68e7c030b 467 PANTHER PTHR16943 3 460 2.8E-122 T 23-04-2016 IPR005656 MmgE/PrpD GO:0016829 NIDE_RS14325 7510b72791359cfc612152f68e7c030b 467 SUPERFAMILY SSF103378 3 456 2.09E-127 T 23-04-2016 IPR005656 MmgE/PrpD GO:0016829 NIDE_RS14325 7510b72791359cfc612152f68e7c030b 467 Pfam PF03972 MmgE/PrpD family 4 449 6.1E-144 T 23-04-2016 IPR005656 MmgE/PrpD GO:0016829 NIDE_RS14325 7510b72791359cfc612152f68e7c030b 467 Gene3D G3DSA:3.30.1330.120 267 415 9.3E-37 T 23-04-2016 NIDE_RS14325 7510b72791359cfc612152f68e7c030b 467 PANTHER PTHR16943:SF19 3 460 2.8E-122 T 23-04-2016 NIDE_RS02900 f1b9695dd4b824ef6be406444e252417 424 SUPERFAMILY SSF50939 224 402 8.97E-23 T 23-04-2016 IPR011040 Sialidases NIDE_RS02900 f1b9695dd4b824ef6be406444e252417 424 SUPERFAMILY SSF50939 55 266 1.9E-10 T 23-04-2016 IPR011040 Sialidases NIDE_RS02900 f1b9695dd4b824ef6be406444e252417 424 Gene3D G3DSA:2.120.10.10 338 404 3.1E-8 T 23-04-2016 IPR011040 Sialidases NIDE_RS02900 f1b9695dd4b824ef6be406444e252417 424 Gene3D G3DSA:2.120.10.10 221 324 1.2E-13 T 23-04-2016 IPR011040 Sialidases NIDE_RS09955 fa19e4dbee306218120f00e1fc4e712f 310 PANTHER PTHR30273 3 306 8.5E-65 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component NIDE_RS09955 fa19e4dbee306218120f00e1fc4e712f 310 PIRSF PIRSF018266 1 304 2.2E-80 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component NIDE_RS09955 fa19e4dbee306218120f00e1fc4e712f 310 PANTHER PTHR30273:SF2 3 306 8.5E-65 T 23-04-2016 NIDE_RS09955 fa19e4dbee306218120f00e1fc4e712f 310 Pfam PF16344 Domain of unknown function (DUF4974) 202 291 9.6E-9 T 23-04-2016 IPR032508 Protein FecR, C-terminal NIDE_RS09955 fa19e4dbee306218120f00e1fc4e712f 310 Pfam PF16220 Domain of unknown function (DUF4880) 1 33 3.3E-8 T 23-04-2016 IPR032623 FecR, N-terminal NIDE_RS09955 fa19e4dbee306218120f00e1fc4e712f 310 Pfam PF04773 FecR protein 97 186 1.4E-23 T 23-04-2016 IPR006860 FecR protein NIDE_RS15095 52402a2eda13a337b3f0cc0008471371 166 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 109 153 2.2E-11 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS15095 52402a2eda13a337b3f0cc0008471371 166 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 58 102 1.0E-10 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS04580 a91f25ebbb55ce6ad62b5ea59ef33545 101 Gene3D G3DSA:3.40.30.10 5 84 1.9E-17 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS04580 a91f25ebbb55ce6ad62b5ea59ef33545 101 SUPERFAMILY SSF52833 2 82 7.21E-16 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS04580 a91f25ebbb55ce6ad62b5ea59ef33545 101 Pfam PF05768 Glutaredoxin-like domain (DUF836) 6 78 3.6E-13 T 23-04-2016 IPR008554 Glutaredoxin-like NIDE_RS05475 eef1f4c0d09332b71f630982a4f6e53d 608 Gene3D G3DSA:3.40.50.300 395 598 2.2E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05475 eef1f4c0d09332b71f630982a4f6e53d 608 Pfam PF00488 MutS domain V 425 598 1.0E-24 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS05475 eef1f4c0d09332b71f630982a4f6e53d 608 Gene3D G3DSA:1.10.1420.10 116 192 7.2E-4 T 23-04-2016 NIDE_RS05475 eef1f4c0d09332b71f630982a4f6e53d 608 SUPERFAMILY SSF52540 392 599 1.26E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05475 eef1f4c0d09332b71f630982a4f6e53d 608 SUPERFAMILY SSF48334 117 371 2.09E-8 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 NIDE_RS05475 eef1f4c0d09332b71f630982a4f6e53d 608 SMART SM00534 421 608 1.4E-11 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 NIDE_RS05475 eef1f4c0d09332b71f630982a4f6e53d 608 Pfam PF05192 MutS domain III 118 365 6.9E-7 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 NIDE_RS05475 eef1f4c0d09332b71f630982a4f6e53d 608 PANTHER PTHR11361 337 598 9.3E-54 T 23-04-2016 NIDE_RS12630 4bed817911e17e467cf47e93d91c523d 151 SUPERFAMILY SSF103256 3 132 4.05E-43 T 23-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 NIDE_RS12630 4bed817911e17e467cf47e93d91c523d 151 Pfam PF02577 Bifunctional nuclease 7 131 2.3E-46 T 23-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 NIDE_RS12630 4bed817911e17e467cf47e93d91c523d 151 PANTHER PTHR15160 5 126 9.2E-31 T 23-04-2016 NIDE_RS08230 abda6a089f98b5e3bf4b2696cc379e2c 336 SUPERFAMILY SSF69917 25 258 7.06E-14 T 23-04-2016 IPR020080 Outer membrane adhesin/peptidase omptin GO:0004190 NIDE_RS05780 f1ac21d4621de1c6c362740b6ea5641e 118 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 72 106 1.5E-13 T 23-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 NIDE_RS05780 f1ac21d4621de1c6c362740b6ea5641e 118 PANTHER PTHR33823:SF3 1 110 6.0E-22 T 23-04-2016 NIDE_RS05780 f1ac21d4621de1c6c362740b6ea5641e 118 SUPERFAMILY SSF109635 1 73 1.57E-7 T 23-04-2016 NIDE_RS05780 f1ac21d4621de1c6c362740b6ea5641e 118 SUPERFAMILY SSF57716 74 110 2.28E-9 T 23-04-2016 NIDE_RS05780 f1ac21d4621de1c6c362740b6ea5641e 118 PANTHER PTHR33823 1 110 6.0E-22 T 23-04-2016 NIDE_RS11170 7a8bb072d588ac167ab318078e9057d9 127 SMART SM00116 76 123 0.025 T 23-04-2016 IPR000644 CBS domain NIDE_RS11170 7a8bb072d588ac167ab318078e9057d9 127 SMART SM00116 11 58 5.3E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS11170 7a8bb072d588ac167ab318078e9057d9 127 SUPERFAMILY SSF54631 2 120 3.41E-30 T 23-04-2016 NIDE_RS11170 7a8bb072d588ac167ab318078e9057d9 127 PANTHER PTHR11911 1 119 3.4E-26 T 23-04-2016 NIDE_RS11170 7a8bb072d588ac167ab318078e9057d9 127 Gene3D G3DSA:3.10.580.10 3 120 1.1E-31 T 23-04-2016 NIDE_RS11170 7a8bb072d588ac167ab318078e9057d9 127 Pfam PF00571 CBS domain 69 120 1.0E-9 T 23-04-2016 IPR000644 CBS domain NIDE_RS11170 7a8bb072d588ac167ab318078e9057d9 127 Pfam PF00571 CBS domain 4 58 3.1E-13 T 23-04-2016 IPR000644 CBS domain NIDE_RS09330 e32a5610ab269a2243359571835afc55 338 Gene3D G3DSA:1.20.970.10 3 68 2.4E-25 T 23-04-2016 NIDE_RS09330 e32a5610ab269a2243359571835afc55 338 SUPERFAMILY SSF47648 1 68 2.49E-19 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain NIDE_RS09330 e32a5610ab269a2243359571835afc55 338 SUPERFAMILY SSF52418 75 335 1.31E-97 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 NIDE_RS09330 e32a5610ab269a2243359571835afc55 338 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 4 333 38.188 T 23-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 NIDE_RS09330 e32a5610ab269a2243359571835afc55 338 Gene3D G3DSA:3.40.1030.10 72 335 2.4E-109 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 NIDE_RS09330 e32a5610ab269a2243359571835afc55 338 Pfam PF02885 Glycosyl transferase family, helical bundle domain 3 64 2.1E-18 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain NIDE_RS09330 e32a5610ab269a2243359571835afc55 338 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 7 332 8.9E-129 T 23-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 NIDE_RS09330 e32a5610ab269a2243359571835afc55 338 Pfam PF00591 Glycosyl transferase family, a/b domain 73 323 5.4E-96 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 NIDE_RS09330 e32a5610ab269a2243359571835afc55 338 PANTHER PTHR11922:SF5 1 337 1.7E-117 T 23-04-2016 NIDE_RS09330 e32a5610ab269a2243359571835afc55 338 PANTHER PTHR11922 1 337 1.7E-117 T 23-04-2016 NIDE_RS01275 bf43a438b60560996a744a44c8860295 702 PANTHER PTHR30441:SF2 2 219 9.0E-20 T 23-04-2016 NIDE_RS01275 bf43a438b60560996a744a44c8860295 702 Pfam PF05170 AsmA family 2 179 4.6E-18 T 23-04-2016 IPR007844 AsmA NIDE_RS01275 bf43a438b60560996a744a44c8860295 702 Pfam PF13502 AsmA-like C-terminal region 433 629 9.4E-24 T 23-04-2016 IPR032712 AsmA-like, C-terminal NIDE_RS01275 bf43a438b60560996a744a44c8860295 702 PANTHER PTHR30441 2 219 9.0E-20 T 23-04-2016 NIDE_RS00670 73a64958865a5b2554b934a1b9f2ce5f 136 Gene3D G3DSA:2.60.40.420 12 123 3.4E-6 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS08960 6ee7dadbbc3a2125cd608168a6896273 192 Pfam PF04773 FecR protein 49 147 2.9E-15 T 23-04-2016 IPR006860 FecR protein NIDE_RS13325 f67fe41bcb29a516bb15e2b97db606f7 121 Pfam PF04977 Septum formation initiator 36 106 9.3E-17 T 23-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 NIDE_RS10445 2cf7a333f35c3f8153c389ec1cc65c54 135 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 4 132 5.3E-28 T 23-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 NIDE_RS10445 2cf7a333f35c3f8153c389ec1cc65c54 135 PANTHER PTHR30435 1 132 1.0E-28 T 23-04-2016 NIDE_RS10445 2cf7a333f35c3f8153c389ec1cc65c54 135 PIRSF PIRSF002889 1 134 2.7E-30 T 23-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 NIDE_RS10445 2cf7a333f35c3f8153c389ec1cc65c54 135 PANTHER PTHR30435:SF12 1 132 1.0E-28 T 23-04-2016 NIDE_RS05000 1906753d6fd630657cd9667ea3f8013d 411 PANTHER PTHR30572 5 411 1.1E-111 T 23-04-2016 NIDE_RS05000 1906753d6fd630657cd9667ea3f8013d 411 Pfam PF02687 FtsX-like permease family 292 404 1.3E-19 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS05000 1906753d6fd630657cd9667ea3f8013d 411 Pfam PF12704 MacB-like periplasmic core domain 24 250 1.2E-35 T 23-04-2016 IPR025857 MacB-like periplasmic core domain NIDE_RS05000 1906753d6fd630657cd9667ea3f8013d 411 PANTHER PTHR30572:SF7 5 411 1.1E-111 T 23-04-2016 NIDE_RS03545 7c1149aeda22a4b14c782d3829f1f473 170 PANTHER PTHR35794:SF2 1 149 2.8E-34 T 23-04-2016 NIDE_RS03545 7c1149aeda22a4b14c782d3829f1f473 170 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 33 2.1E-11 T 23-04-2016 IPR019933 DivIVA domain NIDE_RS03545 7c1149aeda22a4b14c782d3829f1f473 170 Pfam PF05103 DivIVA protein 3 132 3.3E-36 T 23-04-2016 IPR007793 DivIVA family NIDE_RS03545 7c1149aeda22a4b14c782d3829f1f473 170 PANTHER PTHR35794 1 149 2.8E-34 T 23-04-2016 NIDE_RS06955 000b1234f326ac5dc308144896eb0bde 329 Pfam PF02470 MlaD protein 44 121 3.9E-13 T 23-04-2016 IPR003399 Mce/MlaD NIDE_RS06955 000b1234f326ac5dc308144896eb0bde 329 SUPERFAMILY SSF58104 185 268 8.37E-5 T 23-04-2016 NIDE_RS06955 000b1234f326ac5dc308144896eb0bde 329 PANTHER PTHR33371 3 259 3.0E-23 T 23-04-2016 NIDE_RS12675 38c9b6429111ad1050bf5761ebc92eff 187 Hamap MF_00040 Ribosome-recycling factor [frr]. 5 187 27.224 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 NIDE_RS12675 38c9b6429111ad1050bf5761ebc92eff 187 TIGRFAM TIGR00496 frr: ribosome recycling factor 13 187 7.0E-71 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 NIDE_RS12675 38c9b6429111ad1050bf5761ebc92eff 187 Gene3D G3DSA:1.10.132.20 68 187 6.1E-43 T 23-04-2016 IPR023584 Ribosome recycling factor domain NIDE_RS12675 38c9b6429111ad1050bf5761ebc92eff 187 PANTHER PTHR20982 6 187 2.0E-76 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 NIDE_RS12675 38c9b6429111ad1050bf5761ebc92eff 187 SUPERFAMILY SSF55194 6 186 1.7E-69 T 23-04-2016 IPR023584 Ribosome recycling factor domain NIDE_RS12675 38c9b6429111ad1050bf5761ebc92eff 187 Pfam PF01765 Ribosome recycling factor 22 185 1.1E-63 T 23-04-2016 IPR023584 Ribosome recycling factor domain NIDE_RS11665 68fc8214d68f1a68f8b590f3b96404dd 358 Pfam PF01343 Peptidase family S49 154 304 3.1E-47 T 23-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 NIDE_RS11665 68fc8214d68f1a68f8b590f3b96404dd 358 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 88 302 1.0E-67 T 23-04-2016 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 NIDE_RS11665 68fc8214d68f1a68f8b590f3b96404dd 358 SUPERFAMILY SSF52096 229 291 8.29E-42 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS11665 68fc8214d68f1a68f8b590f3b96404dd 358 SUPERFAMILY SSF52096 80 200 8.29E-42 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS11665 68fc8214d68f1a68f8b590f3b96404dd 358 PANTHER PTHR33209 80 342 3.4E-83 T 23-04-2016 NIDE_RS11665 68fc8214d68f1a68f8b590f3b96404dd 358 Gene3D G3DSA:3.90.226.10 230 308 8.1E-57 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS11665 68fc8214d68f1a68f8b590f3b96404dd 358 Gene3D G3DSA:3.90.226.10 55 192 8.1E-57 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS05285 49a5c1497282a7391ed3a7608c996f88 245 PANTHER PTHR12677 25 239 1.5E-47 T 23-04-2016 IPR015414 Transmembrane protein TMEM64/TMEM41 GO:0016021 NIDE_RS05285 49a5c1497282a7391ed3a7608c996f88 245 Pfam PF09335 SNARE associated Golgi protein 88 204 5.3E-27 T 23-04-2016 IPR032816 SNARE associated Golgi protein NIDE_RS07730 13ba71a344608b2059f882c6201e2937 358 Gene3D G3DSA:2.130.10.140 59 199 1.9E-23 T 23-04-2016 NIDE_RS07730 13ba71a344608b2059f882c6201e2937 358 Gene3D G3DSA:2.130.10.140 200 349 1.3E-26 T 23-04-2016 NIDE_RS07730 13ba71a344608b2059f882c6201e2937 358 SUPERFAMILY SSF50939 228 347 1.08E-27 T 23-04-2016 IPR011040 Sialidases NIDE_RS07730 13ba71a344608b2059f882c6201e2937 358 SUPERFAMILY SSF50939 58 160 1.08E-27 T 23-04-2016 IPR011040 Sialidases NIDE_RS18875 4259ec4c7b430871de6d8489dbb46204 165 Pfam PF02643 Uncharacterized ACR, COG1430 54 160 5.5E-22 T 23-04-2016 IPR003795 Protein of unknown function DUF192 NIDE_RS18875 4259ec4c7b430871de6d8489dbb46204 165 PANTHER PTHR37953:SF1 1 165 2.5E-20 T 23-04-2016 NIDE_RS18875 4259ec4c7b430871de6d8489dbb46204 165 PANTHER PTHR37953 1 165 2.5E-20 T 23-04-2016 NIDE_RS08510 201f9f4d78dc15369e82a21bb383d873 211 PANTHER PTHR26402 1 121 2.3E-30 T 23-04-2016 NIDE_RS08510 201f9f4d78dc15369e82a21bb383d873 211 Gene3D G3DSA:3.40.50.2300 1 132 1.4E-33 T 23-04-2016 NIDE_RS08510 201f9f4d78dc15369e82a21bb383d873 211 SMART SM00448 1 122 1.3E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08510 201f9f4d78dc15369e82a21bb383d873 211 PANTHER PTHR26402:SF50 1 121 2.3E-30 T 23-04-2016 NIDE_RS08510 201f9f4d78dc15369e82a21bb383d873 211 Pfam PF00072 Response regulator receiver domain 3 121 2.6E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 NIDE_RS08510 201f9f4d78dc15369e82a21bb383d873 211 SUPERFAMILY SSF52172 1 148 2.85E-31 T 23-04-2016 IPR011006 CheY-like superfamily NIDE_RS19580 220b45e3d836814605612ad14536ee57 84 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 52 1.4E-7 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS19580 220b45e3d836814605612ad14536ee57 84 SUPERFAMILY SSF143120 1 70 2.53E-10 T 23-04-2016 NIDE_RS19580 220b45e3d836814605612ad14536ee57 84 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 66 1.3E-10 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS19580 220b45e3d836814605612ad14536ee57 84 Gene3D G3DSA:3.40.1620.10 2 50 7.2E-10 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM NIDE_RS13060 c6314506977e6bb89d44dd6b47326dbf 307 PANTHER PTHR12526 4 302 2.3E-25 T 23-04-2016 NIDE_RS13060 c6314506977e6bb89d44dd6b47326dbf 307 SUPERFAMILY SSF53756 5 298 2.41E-36 T 23-04-2016 NIDE_RS13060 c6314506977e6bb89d44dd6b47326dbf 307 Pfam PF13439 Glycosyltransferase Family 4 3 114 2.0E-7 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIDE_RS13060 c6314506977e6bb89d44dd6b47326dbf 307 Pfam PF13692 Glycosyl transferases group 1 127 264 2.9E-26 T 23-04-2016 NIDE_RS14755 8019048737af5342b5bc0bb1423c8b59 81 Pfam PF11154 Protein of unknown function (DUF2934) 37 68 8.6E-13 T 23-04-2016 IPR021327 Protein of unknown function DUF2934 NIDE_RS16865 8a17c8e5190c3cd4d2c0da97de71edb2 1099 Pfam PF01734 Patatin-like phospholipase 61 301 3.6E-13 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 NIDE_RS16865 8a17c8e5190c3cd4d2c0da97de71edb2 1099 SUPERFAMILY SSF52151 148 178 4.45E-21 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS16865 8a17c8e5190c3cd4d2c0da97de71edb2 1099 SUPERFAMILY SSF52151 205 335 4.45E-21 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS16865 8a17c8e5190c3cd4d2c0da97de71edb2 1099 SUPERFAMILY SSF52151 55 106 4.45E-21 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 NIDE_RS16865 8a17c8e5190c3cd4d2c0da97de71edb2 1099 Gene3D G3DSA:3.40.1090.10 57 106 4.7E-5 T 23-04-2016 NIDE_RS16865 8a17c8e5190c3cd4d2c0da97de71edb2 1099 Gene3D G3DSA:3.40.1090.10 139 335 4.7E-5 T 23-04-2016 NIDE_RS17935 584169c471cacf51f970e652a62035d5 329 Gene3D G3DSA:2.60.40.1120 237 288 1.7E-9 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain NIDE_RS17935 584169c471cacf51f970e652a62035d5 329 Pfam PF14686 Polysaccharide lyase family 4, domain II 239 284 3.9E-8 T 23-04-2016 IPR029413 Rhamnogalacturonan lyase, domain II NIDE_RS17935 584169c471cacf51f970e652a62035d5 329 SUPERFAMILY SSF49452 236 286 1.55E-9 T 23-04-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 NIDE_RS13625 0112e06d4f74223aa3ed77cb013a2b79 341 Pfam PF01938 TRAM domain 265 315 2.6E-8 T 23-04-2016 IPR002792 TRAM domain NIDE_RS13625 0112e06d4f74223aa3ed77cb013a2b79 341 SUPERFAMILY SSF88723 136 262 9.48E-23 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS13625 0112e06d4f74223aa3ed77cb013a2b79 341 SMART SM00670 134 241 4.9E-8 T 23-04-2016 IPR002716 PIN domain NIDE_RS13625 0112e06d4f74223aa3ed77cb013a2b79 341 Gene3D G3DSA:3.40.50.1010 136 263 3.3E-29 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS13625 0112e06d4f74223aa3ed77cb013a2b79 341 PANTHER PTHR11603 136 333 1.3E-107 T 23-04-2016 NIDE_RS13625 0112e06d4f74223aa3ed77cb013a2b79 341 PANTHER PTHR11603:SF147 136 333 1.3E-107 T 23-04-2016 NIDE_RS10945 8c7827eafef38efdbf6e8ba42cbc2445 623 Pfam PF16889 Heparinase II/III N-terminus 180 319 2.0E-7 T 23-04-2016 IPR031680 Heparin-sulfate lyase, N-terminal MetaCyc: PWY-7651 NIDE_RS10945 8c7827eafef38efdbf6e8ba42cbc2445 623 Pfam PF07940 Heparinase II/III-like protein 383 610 2.7E-39 T 23-04-2016 IPR012480 Heparinase II/III-like MetaCyc: PWY-7651 NIDE_RS10945 8c7827eafef38efdbf6e8ba42cbc2445 623 PANTHER PTHR39210 2 549 2.0E-37 T 23-04-2016 NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 Gene3D G3DSA:3.40.50.720 413 546 8.3E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 Pfam PF02254 TrkA-N domain 417 530 3.9E-23 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 SUPERFAMILY SSF116726 589 663 1.28E-14 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 Gene3D G3DSA:3.30.70.1450 589 662 1.6E-16 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 PANTHER PTHR16254:SF14 403 579 1.4E-192 T 23-04-2016 NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 PANTHER PTHR16254:SF14 1 387 1.4E-192 T 23-04-2016 NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 Pfam PF00999 Sodium/hydrogen exchanger family 13 375 2.6E-65 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 Pfam PF02080 TrkA-C domain 596 662 8.6E-12 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 PANTHER PTHR16254 403 579 1.4E-192 T 23-04-2016 NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 PANTHER PTHR16254 1 387 1.4E-192 T 23-04-2016 NIDE_RS19020 cd84e3f26c323d721cb195115ce8fe29 674 SUPERFAMILY SSF51735 413 551 4.51E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain NIDE_RS21110 6338c1b7b93fe91b458665266ae2dbed 174 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 18 40 5.9E-4 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site NIDE_RS15255 b1de91fe23597f86bc29912d3b7f22f3 242 SMART SM00382 30 212 1.1E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS15255 b1de91fe23597f86bc29912d3b7f22f3 242 SUPERFAMILY SSF52540 4 227 7.73E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS15255 b1de91fe23597f86bc29912d3b7f22f3 242 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 NIDE_RS15255 b1de91fe23597f86bc29912d3b7f22f3 242 PANTHER PTHR24220 7 225 3.3E-81 T 23-04-2016 NIDE_RS15255 b1de91fe23597f86bc29912d3b7f22f3 242 Pfam PF00005 ABC transporter 22 163 1.5E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 NIDE_RS15255 b1de91fe23597f86bc29912d3b7f22f3 242 Gene3D G3DSA:3.40.50.300 3 229 1.8E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS05765 461af60fa5bd789f60def4ab860da4e1 96 Pfam PF00708 Acylphosphatase 8 95 1.3E-24 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 NIDE_RS05765 461af60fa5bd789f60def4ab860da4e1 96 PANTHER PTHR10029 4 95 1.5E-15 T 23-04-2016 NIDE_RS05765 461af60fa5bd789f60def4ab860da4e1 96 SUPERFAMILY SSF54975 7 95 8.94E-24 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 NIDE_RS05765 461af60fa5bd789f60def4ab860da4e1 96 Gene3D G3DSA:3.30.70.100 8 95 1.7E-25 T 23-04-2016 NIDE_RS01065 6a3ca67bb663ced1bf51765db4abba4c 415 Gene3D G3DSA:1.10.645.10 34 403 2.9E-63 T 23-04-2016 IPR029014 NiFe hydrogenase-like NIDE_RS01065 6a3ca67bb663ced1bf51765db4abba4c 415 PANTHER PTHR11993 30 410 2.3E-198 T 23-04-2016 NIDE_RS01065 6a3ca67bb663ced1bf51765db4abba4c 415 PANTHER PTHR11993:SF10 30 410 2.3E-198 T 23-04-2016 NIDE_RS01065 6a3ca67bb663ced1bf51765db4abba4c 415 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 31 415 9.3E-164 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 NIDE_RS01065 6a3ca67bb663ced1bf51765db4abba4c 415 SUPERFAMILY SSF56762 41 415 6.28E-132 T 23-04-2016 IPR029014 NiFe hydrogenase-like NIDE_RS01065 6a3ca67bb663ced1bf51765db4abba4c 415 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 145 415 9.4E-115 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 NIDE_RS01065 6a3ca67bb663ced1bf51765db4abba4c 415 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 18 415 46.969 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 NIDE_RS06780 d5576d6088a569355de6f41c9040e18c 80 Gene3D G3DSA:1.10.1470.10 1 60 3.7E-9 T 23-04-2016 IPR008462 CsbD-like NIDE_RS06780 d5576d6088a569355de6f41c9040e18c 80 SUPERFAMILY SSF69047 1 60 6.15E-8 T 23-04-2016 IPR008462 CsbD-like NIDE_RS21160 a06b0367053799615ef5a9b6e0e921e1 154 SUPERFAMILY SSF53933 71 153 6.24E-20 T 23-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 NIDE_RS21160 a06b0367053799615ef5a9b6e0e921e1 154 Gene3D G3DSA:3.10.450.30 68 153 3.0E-24 T 23-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 NIDE_RS21160 a06b0367053799615ef5a9b6e0e921e1 154 Pfam PF00545 ribonuclease 73 151 7.8E-19 T 23-04-2016 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 NIDE_RS02585 bf2824e8783a2f1595e6f008731c2392 592 Gene3D G3DSA:1.10.760.10 538 578 3.8E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS02585 bf2824e8783a2f1595e6f008731c2392 592 Gene3D G3DSA:1.10.760.10 340 367 3.8E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS02585 bf2824e8783a2f1595e6f008731c2392 592 Gene3D G3DSA:1.10.760.10 411 488 3.8E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS02585 bf2824e8783a2f1595e6f008731c2392 592 SUPERFAMILY SSF46626 553 574 7.87E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS02585 bf2824e8783a2f1595e6f008731c2392 592 SUPERFAMILY SSF46626 441 486 7.87E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS02585 bf2824e8783a2f1595e6f008731c2392 592 SUPERFAMILY SSF46626 329 378 7.87E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS03985 b4d27c72ad6dfe19f509f6f8cbe90de5 204 Gene3D G3DSA:1.10.10.640 170 202 4.5E-21 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical NIDE_RS03985 b4d27c72ad6dfe19f509f6f8cbe90de5 204 Gene3D G3DSA:1.10.10.640 74 114 4.5E-21 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical NIDE_RS03985 b4d27c72ad6dfe19f509f6f8cbe90de5 204 PIRSF PIRSF004649 2 204 1.3E-55 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC NIDE_RS03985 b4d27c72ad6dfe19f509f6f8cbe90de5 204 Pfam PF05494 MlaC protein 37 196 1.6E-47 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC NIDE_RS03985 b4d27c72ad6dfe19f509f6f8cbe90de5 204 Gene3D G3DSA:3.10.450.50 117 169 2.0E-20 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS03985 b4d27c72ad6dfe19f509f6f8cbe90de5 204 Gene3D G3DSA:3.10.450.50 29 73 2.0E-20 T 23-04-2016 IPR032710 NTF2-like domain NIDE_RS03985 b4d27c72ad6dfe19f509f6f8cbe90de5 204 PANTHER PTHR36573 1 201 1.2E-37 T 23-04-2016 NIDE_RS19710 b88308d279c1702eb6c7ae12060c7f76 142 PANTHER PTHR39434:SF1 1 142 2.1E-29 T 23-04-2016 NIDE_RS19710 b88308d279c1702eb6c7ae12060c7f76 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 120 2.6E-10 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIDE_RS19710 b88308d279c1702eb6c7ae12060c7f76 142 Gene3D G3DSA:3.10.180.10 5 127 3.0E-23 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS19710 b88308d279c1702eb6c7ae12060c7f76 142 SUPERFAMILY SSF54593 4 124 2.06E-23 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIDE_RS19710 b88308d279c1702eb6c7ae12060c7f76 142 PANTHER PTHR39434 1 142 2.1E-29 T 23-04-2016 NIDE_RS08015 80744390d25b8acb88ddd1746fdcc9b7 338 PANTHER PTHR37461 1 100 5.7E-16 T 23-04-2016 NIDE_RS08015 80744390d25b8acb88ddd1746fdcc9b7 338 PANTHER PTHR37461 217 338 5.7E-16 T 23-04-2016 NIDE_RS08015 80744390d25b8acb88ddd1746fdcc9b7 338 PANTHER PTHR37461 116 153 5.7E-16 T 23-04-2016 NIDE_RS08015 80744390d25b8acb88ddd1746fdcc9b7 338 Pfam PF10099 Anti-sigma-K factor rskA 60 335 8.3E-25 T 23-04-2016 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 NIDE_RS13355 3eb34f5bdd866258b0ad3920efacc599 491 PIRSF PIRSF001221 3 454 1.2E-48 T 23-04-2016 NIDE_RS13355 3eb34f5bdd866258b0ad3920efacc599 491 PANTHER PTHR11895:SF75 9 488 1.5E-245 T 23-04-2016 NIDE_RS13355 3eb34f5bdd866258b0ad3920efacc599 491 Pfam PF01425 Amidase 27 471 1.1E-164 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 NIDE_RS13355 3eb34f5bdd866258b0ad3920efacc599 491 PANTHER PTHR11895 9 488 1.5E-245 T 23-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 NIDE_RS13355 3eb34f5bdd866258b0ad3920efacc599 491 ProSitePatterns PS00571 Amidases signature. 155 186 - T 23-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 NIDE_RS13355 3eb34f5bdd866258b0ad3920efacc599 491 SUPERFAMILY SSF75304 7 488 1.09E-170 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 NIDE_RS13355 3eb34f5bdd866258b0ad3920efacc599 491 Gene3D G3DSA:3.90.1300.10 6 489 5.1E-188 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 NIDE_RS13355 3eb34f5bdd866258b0ad3920efacc599 491 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 482 1.3E-193 T 23-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 NIDE_RS13355 3eb34f5bdd866258b0ad3920efacc599 491 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 14 482 94.862 T 23-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 NIDE_RS19640 7aa14f25bd08063ca98e8d71bdba6567 418 TIGRFAM TIGR02710 TIGR02710: CRISPR-associated protein, TIGR02710 family 21 403 1.2E-38 T 23-04-2016 IPR014082 CRISPR-associated protein, Cas02710 NIDE_RS19640 7aa14f25bd08063ca98e8d71bdba6567 418 Pfam PF09670 CRISPR-associated protein (Cas_Cas02710) 24 403 4.9E-52 T 23-04-2016 NIDE_RS07545 bf4ef1f8d8590bbf72aed3897c8c0c4a 172 SUPERFAMILY SSF81296 90 165 7.93E-13 T 23-04-2016 IPR014756 Immunoglobulin E-set NIDE_RS07545 bf4ef1f8d8590bbf72aed3897c8c0c4a 172 Gene3D G3DSA:2.60.40.10 90 165 1.3E-15 T 23-04-2016 IPR013783 Immunoglobulin-like fold NIDE_RS07545 bf4ef1f8d8590bbf72aed3897c8c0c4a 172 Pfam PF01833 IPT/TIG domain 91 149 2.4E-6 T 23-04-2016 IPR002909 IPT domain GO:0005515 NIDE_RS20615 c04f03e17a4f32a46ea30fa694a652bb 263 Gene3D G3DSA:3.40.50.1820 40 258 7.7E-41 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS20615 c04f03e17a4f32a46ea30fa694a652bb 263 SUPERFAMILY SSF53474 43 257 2.98E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS20615 c04f03e17a4f32a46ea30fa694a652bb 263 PANTHER PTHR17630 55 257 5.0E-33 T 23-04-2016 NIDE_RS20615 c04f03e17a4f32a46ea30fa694a652bb 263 Pfam PF01738 Dienelactone hydrolase family 56 258 1.2E-42 T 23-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 NIDE_RS20615 c04f03e17a4f32a46ea30fa694a652bb 263 PANTHER PTHR17630:SF42 55 257 5.0E-33 T 23-04-2016 NIDE_RS12335 c738e3da2933a0d37caed30d93b729b8 271 Gene3D G3DSA:3.40.50.150 6 232 3.6E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12335 c738e3da2933a0d37caed30d93b729b8 271 Pfam PF08241 Methyltransferase domain 47 139 2.3E-18 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 NIDE_RS12335 c738e3da2933a0d37caed30d93b729b8 271 SUPERFAMILY SSF53335 8 225 4.38E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS12335 c738e3da2933a0d37caed30d93b729b8 271 PANTHER PTHR10108 8 139 8.4E-22 T 23-04-2016 NIDE_RS06260 6bcbc41daa43f5dd1fe7bf32546258a0 209 Pfam PF04351 Pilus assembly protein, PilP 90 197 2.8E-12 T 23-04-2016 IPR007446 Pilus assembly protein PilP NIDE_RS07120 4fcac853a4606d3acebdbf5f9250557c 520 Pfam PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) 2 470 2.1E-100 T 23-04-2016 IPR013381 CRISPR-associated protein Cse1 NIDE_RS07120 4fcac853a4606d3acebdbf5f9250557c 520 TIGRFAM TIGR02547 casA_cse1: CRISPR type I-E/ECOLI-associated protein CasA/Cse1 2 505 6.0E-89 T 23-04-2016 IPR013381 CRISPR-associated protein Cse1 NIDE_RS14665 d53c524972560e039a2430bc0d0bd94b 73 Pfam PF11455 Protein of unknown function (DUF3018) 11 71 1.6E-25 T 23-04-2016 IPR021558 Protein of unknown function DUF3018 NIDE_RS10115 7928f51f0cedfb2426e6e03f884cbc75 283 Gene3D G3DSA:3.90.550.10 20 279 2.1E-20 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS10115 7928f51f0cedfb2426e6e03f884cbc75 283 SUPERFAMILY SSF53448 19 278 7.58E-25 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS00495 5bafaa062f4fb864e859b50c47682ac2 125 Pfam PF02924 Bacteriophage lambda head decoration protein D 4 119 1.6E-41 T 23-04-2016 IPR004195 Head decoration protein D GO:0019028 NIDE_RS00495 5bafaa062f4fb864e859b50c47682ac2 125 Gene3D G3DSA:2.40.300.10 27 110 1.4E-5 T 23-04-2016 IPR004195 Head decoration protein D GO:0019028 NIDE_RS11025 df46fdad236845ab4e28674c5b6486a0 203 Gene3D G3DSA:3.10.560.10 114 203 3.1E-17 T 23-04-2016 NIDE_RS11025 df46fdad236845ab4e28674c5b6486a0 203 Pfam PF02563 Polysaccharide biosynthesis/export protein 42 115 1.1E-19 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 NIDE_RS11025 df46fdad236845ab4e28674c5b6486a0 203 Pfam PF10531 SLBB domain 122 171 1.7E-9 T 23-04-2016 IPR019554 Soluble ligand binding domain NIDE_RS11025 df46fdad236845ab4e28674c5b6486a0 203 PANTHER PTHR33619 45 203 1.6E-37 T 23-04-2016 NIDE_RS11025 df46fdad236845ab4e28674c5b6486a0 203 Gene3D G3DSA:3.30.1950.10 50 113 3.1E-18 T 23-04-2016 NIDE_RS08460 074f7bbd71bc24bc29db722613be63c7 225 Pfam PF11866 Protein of unknown function (DUF3386) 15 224 4.0E-61 T 23-04-2016 IPR021809 Protein of unknown function DUF3386 NIDE_RS13860 5bdeed674e52b92bd38b9104c1525f73 253 Pfam PF00535 Glycosyl transferase family 2 5 99 1.4E-15 T 23-04-2016 IPR001173 Glycosyltransferase 2-like NIDE_RS13860 5bdeed674e52b92bd38b9104c1525f73 253 PANTHER PTHR10859 1 85 2.1E-20 T 23-04-2016 NIDE_RS13860 5bdeed674e52b92bd38b9104c1525f73 253 SUPERFAMILY SSF53448 1 175 1.29E-22 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS13860 5bdeed674e52b92bd38b9104c1525f73 253 Gene3D G3DSA:3.90.550.10 5 87 3.7E-11 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases NIDE_RS16830 2d4765616679623ae9cf20b49b135319 194 Pfam PF12973 ChrR Cupin-like domain 99 186 1.2E-15 T 23-04-2016 IPR025979 ChrR-like cupin domain NIDE_RS16830 2d4765616679623ae9cf20b49b135319 194 Gene3D G3DSA:2.60.120.10 90 186 3.0E-22 T 23-04-2016 IPR014710 RmlC-like jelly roll fold NIDE_RS16830 2d4765616679623ae9cf20b49b135319 194 SUPERFAMILY SSF51182 88 186 4.16E-24 T 23-04-2016 IPR011051 RmlC-like cupin domain NIDE_RS17310 0bc990b83e64baf9ba78f5193767f480 270 Pfam PF09851 Short C-terminal domain 240 267 1.2E-8 T 23-04-2016 IPR018649 SHOCT domain NIDE_RS03965 f0d863f7660574242b91f6a18a72698a 267 Gene3D G3DSA:3.40.50.1580 19 214 4.6E-27 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 NIDE_RS03965 f0d863f7660574242b91f6a18a72698a 267 Pfam PF01048 Phosphorylase superfamily 20 204 1.5E-14 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 NIDE_RS03965 f0d863f7660574242b91f6a18a72698a 267 SUPERFAMILY SSF53167 19 215 1.96E-24 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 NIDE_RS03770 dc9176c5e06f477c0d76f5903f9a0f3e 459 SUPERFAMILY SSF56935 252 431 2.38E-9 T 23-04-2016 NIDE_RS03770 dc9176c5e06f477c0d76f5903f9a0f3e 459 SUPERFAMILY SSF56935 138 222 2.38E-9 T 23-04-2016 NIDE_RS16895 445442fbdb27cce9fe342df7ad09d06b 94 SUPERFAMILY SSF46785 4 86 9.52E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16895 445442fbdb27cce9fe342df7ad09d06b 94 Gene3D G3DSA:1.10.10.10 6 86 2.2E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS16895 445442fbdb27cce9fe342df7ad09d06b 94 Pfam PF01638 HxlR-like helix-turn-helix 7 87 3.1E-10 T 23-04-2016 IPR002577 Helix-turn-helix, HxlR type NIDE_RS10975 d85a9e14041755b65d5872180f35720f 171 SUPERFAMILY SSF53335 23 119 1.09E-9 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS10975 d85a9e14041755b65d5872180f35720f 171 Gene3D G3DSA:3.40.50.150 24 112 2.2E-6 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS18415 00d9386b1f7d81d227de7a00e5554138 196 Pfam PF12007 Protein of unknown function (DUF3501) 4 192 3.6E-65 T 23-04-2016 IPR021890 Protein of unknown function DUF3501 NIDE_RS17550 658acf2bbe04d7b8c1fb2f530d75fade 434 PANTHER PTHR13748 69 425 1.4E-89 T 23-04-2016 NIDE_RS17550 658acf2bbe04d7b8c1fb2f530d75fade 434 Gene3D G3DSA:3.40.50.300 251 290 1.3E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17550 658acf2bbe04d7b8c1fb2f530d75fade 434 PANTHER PTHR13748:SF41 69 425 1.4E-89 T 23-04-2016 NIDE_RS17550 658acf2bbe04d7b8c1fb2f530d75fade 434 SUPERFAMILY SSF52540 121 298 1.36E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17550 658acf2bbe04d7b8c1fb2f530d75fade 434 Gene3D G3DSA:3.40.50.300 207 220 7.0E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS17550 658acf2bbe04d7b8c1fb2f530d75fade 434 Gene3D G3DSA:3.40.50.300 112 171 7.0E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS21135 f18b2a3ab54cf9167f8f085f5ed18b02 120 Gene3D G3DSA:3.20.20.220 17 83 3.3E-4 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like NIDE_RS13600 54a91883fa8899bc5ba86e2a05542f29 253 Gene3D G3DSA:3.30.70.580 1 105 1.1E-37 T 23-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS13600 54a91883fa8899bc5ba86e2a05542f29 253 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 239 1.3E-62 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS13600 54a91883fa8899bc5ba86e2a05542f29 253 PIRSF PIRSF001430 1 250 1.2E-81 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS13600 54a91883fa8899bc5ba86e2a05542f29 253 SUPERFAMILY SSF55120 1 246 1.58E-81 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS13600 54a91883fa8899bc5ba86e2a05542f29 253 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 244 34.906 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS13600 54a91883fa8899bc5ba86e2a05542f29 253 Pfam PF01416 tRNA pseudouridine synthase 143 244 8.1E-27 T 23-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS13600 54a91883fa8899bc5ba86e2a05542f29 253 Pfam PF01416 tRNA pseudouridine synthase 9 104 8.6E-12 T 23-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS13600 54a91883fa8899bc5ba86e2a05542f29 253 PANTHER PTHR11142 1 244 4.2E-88 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS13600 54a91883fa8899bc5ba86e2a05542f29 253 Gene3D G3DSA:3.30.70.660 107 242 3.3E-43 T 23-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 NIDE_RS13600 54a91883fa8899bc5ba86e2a05542f29 253 PANTHER PTHR11142:SF0 1 244 4.2E-88 T 23-04-2016 NIDE_RS06995 acd330b6643f1992866d5d5ac7caa494 478 PANTHER PTHR30624:SF4 7 478 1.4E-213 T 23-04-2016 NIDE_RS06995 acd330b6643f1992866d5d5ac7caa494 478 PANTHER PTHR30624 7 478 1.4E-213 T 23-04-2016 NIDE_RS06995 acd330b6643f1992866d5d5ac7caa494 478 Pfam PF01523 Putative modulator of DNA gyrase 33 328 4.1E-63 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- NIDE_RS06995 acd330b6643f1992866d5d5ac7caa494 478 SUPERFAMILY SSF111283 19 476 1.57E-129 T 23-04-2016 NIDE_RS06995 acd330b6643f1992866d5d5ac7caa494 478 PIRSF PIRSF004919 13 477 3.1E-135 T 23-04-2016 IPR025502 TldD KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- NIDE_RS13460 e381678b9990d73a65b3fef47c34cf4c 236 Pfam PF07411 Domain of unknown function (DUF1508) 176 220 9.9E-6 T 23-04-2016 IPR010879 Domain of unknown function DUF1508 NIDE_RS13460 e381678b9990d73a65b3fef47c34cf4c 236 SUPERFAMILY SSF160113 167 224 8.63E-11 T 23-04-2016 IPR010879 Domain of unknown function DUF1508 NIDE_RS13460 e381678b9990d73a65b3fef47c34cf4c 236 Gene3D G3DSA:3.30.160.160 169 212 1.2E-10 T 23-04-2016 IPR010879 Domain of unknown function DUF1508 NIDE_RS06355 c716e913b02173382306d0ed17937377 97 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 23 84 2.6E-10 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family NIDE_RS06355 c716e913b02173382306d0ed17937377 97 SUPERFAMILY SSF143011 10 83 1.57E-13 T 23-04-2016 NIDE_RS02955 be42ff9811a60e80f476202da8af7e68 469 Gene3D G3DSA:2.30.40.10 38 87 7.3E-7 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 NIDE_RS02955 be42ff9811a60e80f476202da8af7e68 469 Gene3D G3DSA:2.30.40.10 414 450 7.3E-7 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 NIDE_RS02955 be42ff9811a60e80f476202da8af7e68 469 Pfam PF01979 Amidohydrolase family 242 439 1.8E-6 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 NIDE_RS02955 be42ff9811a60e80f476202da8af7e68 469 Gene3D G3DSA:3.20.20.140 89 374 1.2E-30 T 23-04-2016 NIDE_RS02955 be42ff9811a60e80f476202da8af7e68 469 SUPERFAMILY SSF51556 102 375 2.79E-18 T 23-04-2016 IPR032466 Metal-dependent hydrolase NIDE_RS02645 94fb887923d489794e2d14a92e2f9d91 109 Pfam PF04342 Putative member of DMT superfamily (DUF486) 3 106 1.6E-49 T 23-04-2016 IPR007437 Putative member of DMT superfamily NIDE_RS02645 94fb887923d489794e2d14a92e2f9d91 109 PANTHER PTHR38482 1 108 3.6E-50 T 23-04-2016 NIDE_RS02645 94fb887923d489794e2d14a92e2f9d91 109 PIRSF PIRSF021239 1 109 4.6E-53 T 23-04-2016 IPR007437 Putative member of DMT superfamily NIDE_RS12325 2a6c71c10f2043091fc094a02f59949f 371 SUPERFAMILY SSF55729 149 312 8.69E-22 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS12325 2a6c71c10f2043091fc094a02f59949f 371 Pfam PF13480 Acetyltransferase (GNAT) domain 155 285 1.0E-8 T 23-04-2016 NIDE_RS12325 2a6c71c10f2043091fc094a02f59949f 371 Gene3D G3DSA:3.40.630.30 140 301 1.0E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase NIDE_RS11855 39022cf325299c6ac2832a52cfe82e72 438 SUPERFAMILY SSF56935 129 431 2.42E-11 T 23-04-2016 NIDE_RS11855 39022cf325299c6ac2832a52cfe82e72 438 SUPERFAMILY SSF56935 83 102 2.42E-11 T 23-04-2016 NIDE_RS11855 39022cf325299c6ac2832a52cfe82e72 438 Pfam PF07642 Putative beta-barrel porin-2, OmpL-like. bbp2 82 438 1.2E-67 T 23-04-2016 IPR011486 Putative beta-barrel porin-2, OmpL-like. bbp2 NIDE_RS02855 3e61db417bd88fb39c952282284ac3aa 138 Pfam PF04940 Sensors of blue-light using FAD 1 92 5.3E-30 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 NIDE_RS02855 3e61db417bd88fb39c952282284ac3aa 138 SUPERFAMILY SSF54975 1 137 4.25E-39 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 NIDE_RS02855 3e61db417bd88fb39c952282284ac3aa 138 SMART SM01034 1 93 1.7E-42 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 NIDE_RS19365 583109f3b2c74554768fac971ecee5cc 99 Pfam PF13490 Putative zinc-finger 25 58 1.4E-10 T 23-04-2016 IPR027383 Putative zinc-finger NIDE_RS17860 809859a346f4fe8cc8d0f78ad1c3fb06 329 SUPERFAMILY SSF56935 186 329 6.41E-5 T 23-04-2016 NIDE_RS17860 809859a346f4fe8cc8d0f78ad1c3fb06 329 Gene3D G3DSA:2.40.160.10 202 329 3.6E-5 T 23-04-2016 IPR023614 Porin domain NIDE_RS12870 599d4991939835218ad7d42e2480f6a6 488 Pfam PF07690 Major Facilitator Superfamily 31 422 3.4E-60 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 NIDE_RS12870 599d4991939835218ad7d42e2480f6a6 488 Gene3D G3DSA:1.20.1250.20 276 474 2.2E-23 T 23-04-2016 NIDE_RS12870 599d4991939835218ad7d42e2480f6a6 488 Gene3D G3DSA:1.20.1250.20 26 206 8.4E-32 T 23-04-2016 NIDE_RS12870 599d4991939835218ad7d42e2480f6a6 488 SUPERFAMILY SSF103473 261 475 1.26E-71 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS12870 599d4991939835218ad7d42e2480f6a6 488 SUPERFAMILY SSF103473 17 210 1.26E-71 T 23-04-2016 IPR020846 Major facilitator superfamily domain NIDE_RS12870 599d4991939835218ad7d42e2480f6a6 488 PANTHER PTHR23501 13 477 1.1E-106 T 23-04-2016 NIDE_RS12870 599d4991939835218ad7d42e2480f6a6 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 29 53 1.7E-12 T 23-04-2016 NIDE_RS12870 599d4991939835218ad7d42e2480f6a6 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 120 140 1.7E-12 T 23-04-2016 NIDE_RS12870 599d4991939835218ad7d42e2480f6a6 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 150 174 1.7E-12 T 23-04-2016 NIDE_RS12870 599d4991939835218ad7d42e2480f6a6 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 315 339 1.7E-12 T 23-04-2016 NIDE_RS18560 658162db74a0178ea20ce1c18f7116af 555 Pfam PF13372 Alginate export 78 547 6.0E-30 T 23-04-2016 IPR025388 Alginate export domain UniPathway: UPA00286 NIDE_RS00940 bd264752050fcb142c7f6ffc450e2115 198 SUPERFAMILY SSF54626 31 194 6.02E-13 T 23-04-2016 IPR016087 Chalcone isomerase GO:0016872 NIDE_RS00940 bd264752050fcb142c7f6ffc450e2115 198 Pfam PF16036 Chalcone isomerase-like 30 192 5.6E-34 T 23-04-2016 IPR016087 Chalcone isomerase GO:0016872 NIDE_RS04160 96458e9eac94d0eb79ce97363de7dc7f 241 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 136 223 5.3E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS04160 96458e9eac94d0eb79ce97363de7dc7f 241 Gene3D G3DSA:1.10.760.10 130 223 2.7E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS04160 96458e9eac94d0eb79ce97363de7dc7f 241 SUPERFAMILY SSF46626 123 223 3.15E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS19205 528d652527034fa8e17dcbabf32f0043 83 SUPERFAMILY SSF141371 1 75 1.96E-7 T 23-04-2016 NIDE_RS14310 9a8e789bcf47dd3e0952aab21105ba98 282 Gene3D G3DSA:1.10.12.10 205 259 4.5E-10 T 23-04-2016 IPR014748 Crontonase, C-terminal NIDE_RS14310 9a8e789bcf47dd3e0952aab21105ba98 282 Gene3D G3DSA:3.90.226.10 4 202 1.0E-60 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS14310 9a8e789bcf47dd3e0952aab21105ba98 282 PANTHER PTHR11941 1 259 5.8E-83 T 23-04-2016 NIDE_RS14310 9a8e789bcf47dd3e0952aab21105ba98 282 PANTHER PTHR11941:SF86 1 259 5.8E-83 T 23-04-2016 NIDE_RS14310 9a8e789bcf47dd3e0952aab21105ba98 282 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 260 4.1E-54 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 NIDE_RS14310 9a8e789bcf47dd3e0952aab21105ba98 282 SUPERFAMILY SSF52096 3 259 6.88E-73 T 23-04-2016 IPR029045 ClpP/crotonase-like domain NIDE_RS18645 adeefbbfd77393121d2f2f8d7287f5df 345 SUPERFAMILY SSF49313 256 331 2.2E-7 T 23-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 NIDE_RS13180 bf3447a1cc96ca67f76195fb89cb97f6 371 Gene3D G3DSA:3.40.50.1110 101 174 3.6E-10 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS13180 bf3447a1cc96ca67f76195fb89cb97f6 371 Gene3D G3DSA:3.40.50.1110 268 370 3.6E-10 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS13180 bf3447a1cc96ca67f76195fb89cb97f6 371 SUPERFAMILY SSF52266 100 179 5.25E-17 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS13180 bf3447a1cc96ca67f76195fb89cb97f6 371 SUPERFAMILY SSF52266 271 370 5.25E-17 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS08905 695e4947fce70ca526288941cb931765 636 SUPERFAMILY SSF51126 335 513 6.8E-5 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS11825 0685fa836c237b0479e5b79733110272 394 Pfam PF05940 NnrS protein 16 390 5.9E-105 T 23-04-2016 IPR010266 NnrS NIDE_RS17900 137569a50caedd0f8d8c186804cffc14 157 Pfam PF05425 Copper resistance protein D 46 154 1.0E-7 T 23-04-2016 IPR008457 Copper resistance protein D GO:0016021 NIDE_RS20045 02a2cb7e275daafc97e20f49269db45a 486 SUPERFAMILY SSF69796 343 474 9.02E-16 T 23-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 NIDE_RS20045 02a2cb7e275daafc97e20f49269db45a 486 Pfam PF02511 Thymidylate synthase complementing protein 8 211 3.0E-8 T 23-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 NIDE_RS20045 02a2cb7e275daafc97e20f49269db45a 486 Pfam PF02511 Thymidylate synthase complementing protein 342 467 2.0E-11 T 23-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 NIDE_RS20045 02a2cb7e275daafc97e20f49269db45a 486 SUPERFAMILY SSF69796 6 212 2.48E-10 T 23-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 NIDE_RS13185 f8d6ac2ba1b59f3196cde4678eb5b087 354 SUPERFAMILY SSF53756 32 348 1.51E-22 T 23-04-2016 NIDE_RS13185 f8d6ac2ba1b59f3196cde4678eb5b087 354 Pfam PF00534 Glycosyl transferases group 1 173 321 6.7E-10 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 NIDE_RS13185 f8d6ac2ba1b59f3196cde4678eb5b087 354 Gene3D G3DSA:3.40.50.2000 172 319 2.0E-11 T 23-04-2016 NIDE_RS16295 75479f707975a61fb3ac61d85ba531df 195 Pfam PF06181 Protein of unknown function (DUF989) 120 188 1.7E-8 T 23-04-2016 IPR010389 Domain of unknown function DUF989 NIDE_RS05635 7ee6ed7af87ebd942204c90ad817fd59 88 Pfam PF08899 Domain of unknown function (DUF1844) 3 75 9.1E-27 T 23-04-2016 IPR014995 Protein of unknown function DUF1844 NIDE_RS08050 3cddc5396389b97e7852c14a9e2ed1c2 191 PANTHER PTHR10681 1 186 8.2E-68 T 23-04-2016 NIDE_RS08050 3cddc5396389b97e7852c14a9e2ed1c2 191 Gene3D G3DSA:3.40.30.10 10 173 3.1E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS08050 3cddc5396389b97e7852c14a9e2ed1c2 191 PANTHER PTHR10681:SF91 1 186 8.2E-68 T 23-04-2016 NIDE_RS08050 3cddc5396389b97e7852c14a9e2ed1c2 191 Pfam PF00578 AhpC/TSA family 11 135 2.9E-16 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS08050 3cddc5396389b97e7852c14a9e2ed1c2 191 SUPERFAMILY SSF52833 5 188 1.74E-50 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS02540 69be7ead2594723f33b31ad2422dc9f2 243 Pfam PF06051 Domain of Unknown Function (DUF928) 62 238 2.0E-24 T 23-04-2016 IPR010328 Protein of unknown function DUF928 NIDE_RS05665 e087f52cf5de39a8078865ccc5a85d1b 108 Gene3D G3DSA:1.20.120.160 19 103 5.3E-12 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS05665 e087f52cf5de39a8078865ccc5a85d1b 108 SUPERFAMILY SSF47226 20 103 3.14E-12 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS05665 e087f52cf5de39a8078865ccc5a85d1b 108 Pfam PF01627 Hpt domain 27 102 1.8E-6 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 NIDE_RS09775 9ef163fdfc4718feaadcb210e1cddda5 259 SMART SM00382 101 234 1.1E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain NIDE_RS09775 9ef163fdfc4718feaadcb210e1cddda5 259 PIRSF PIRSF003073 1 252 1.3E-88 T 23-04-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein NIDE_RS09775 9ef163fdfc4718feaadcb210e1cddda5 259 Pfam PF01695 IstB-like ATP binding protein 57 232 4.0E-63 T 23-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 NIDE_RS09775 9ef163fdfc4718feaadcb210e1cddda5 259 Gene3D G3DSA:3.40.50.300 72 231 8.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09775 9ef163fdfc4718feaadcb210e1cddda5 259 SUPERFAMILY SSF52540 69 237 3.32E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS09775 9ef163fdfc4718feaadcb210e1cddda5 259 PANTHER PTHR30050 1 254 8.9E-66 T 23-04-2016 NIDE_RS03760 1e392fb40223448d930534dacc8b90a4 239 Gene3D G3DSA:2.60.40.1120 178 223 2.6E-5 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain NIDE_RS03760 1e392fb40223448d930534dacc8b90a4 239 Gene3D G3DSA:2.60.40.1120 65 83 2.6E-5 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain NIDE_RS03760 1e392fb40223448d930534dacc8b90a4 239 Gene3D G3DSA:2.60.40.420 98 174 6.0E-6 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS03760 1e392fb40223448d930534dacc8b90a4 239 SUPERFAMILY SSF49503 88 174 1.71E-10 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS03760 1e392fb40223448d930534dacc8b90a4 239 SUPERFAMILY SSF49452 169 228 1.75E-7 T 23-04-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 NIDE_RS04570 cc27646705944a1ba5cc8f27b458c9ac 296 PANTHER PTHR22726:SF1 19 284 1.2E-78 T 23-04-2016 NIDE_RS04570 cc27646705944a1ba5cc8f27b458c9ac 296 PANTHER PTHR22726 19 284 1.2E-78 T 23-04-2016 NIDE_RS04570 cc27646705944a1ba5cc8f27b458c9ac 296 Pfam PF01435 Peptidase family M48 85 273 6.4E-38 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 NIDE_RS04570 cc27646705944a1ba5cc8f27b458c9ac 296 Gene3D G3DSA:3.30.2010.10 75 165 2.0E-13 T 23-04-2016 NIDE_RS11995 0bfd969ace778d24d622e35ef78ee485 132 Pfam PF06803 Protein of unknown function (DUF1232) 78 113 1.3E-15 T 23-04-2016 IPR010652 Protein of unknown function DUF1232 UniPathway: UPA00143 NIDE_RS14780 4ae6e6578e39d801902d441888082fa6 218 Pfam PF05227 CHASE3 domain 40 166 1.8E-19 T 23-04-2016 IPR007891 CHASE3 NIDE_RS11515 5c60b44001cb29ec348e44c2b1220c4a 114 PANTHER PTHR33988 1 114 8.0E-21 T 23-04-2016 NIDE_RS11515 5c60b44001cb29ec348e44c2b1220c4a 114 PIRSF PIRSF033490 1 113 4.9E-27 T 23-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 NIDE_RS11515 5c60b44001cb29ec348e44c2b1220c4a 114 PANTHER PTHR33988:SF2 1 114 8.0E-21 T 23-04-2016 NIDE_RS11515 5c60b44001cb29ec348e44c2b1220c4a 114 SUPERFAMILY SSF50118 2 113 3.92E-22 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor NIDE_RS11515 5c60b44001cb29ec348e44c2b1220c4a 114 Gene3D G3DSA:2.30.30.110 3 113 1.6E-23 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor NIDE_RS11515 5c60b44001cb29ec348e44c2b1220c4a 114 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 3 110 7.8E-21 T 23-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 NIDE_RS18255 4bfc471efcdac1332bd1942bdb684178 93 Gene3D G3DSA:1.10.10.10 14 62 2.0E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS18255 4bfc471efcdac1332bd1942bdb684178 93 Pfam PF12728 Helix-turn-helix domain 15 61 3.5E-11 T 23-04-2016 NIDE_RS03825 e2eb5244a259bd84bd8ee2afafe4f37f 140 SMART SM00195 2 130 0.0041 T 23-04-2016 IPR020422 Dual specificity protein phosphatase domain GO:0006470|GO:0008138 NIDE_RS03825 e2eb5244a259bd84bd8ee2afafe4f37f 140 PANTHER PTHR10159 2 112 6.0E-12 T 23-04-2016 IPR024950 Dual specificity phosphatase NIDE_RS03825 e2eb5244a259bd84bd8ee2afafe4f37f 140 Pfam PF00782 Dual specificity phosphatase, catalytic domain 21 121 1.5E-10 T 23-04-2016 IPR000340 Dual specificity phosphatase, catalytic domain GO:0006470|GO:0008138 NIDE_RS03825 e2eb5244a259bd84bd8ee2afafe4f37f 140 Gene3D G3DSA:3.90.190.10 2 127 3.3E-21 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like NIDE_RS03825 e2eb5244a259bd84bd8ee2afafe4f37f 140 SUPERFAMILY SSF52799 3 129 6.12E-19 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like NIDE_RS14050 cb60cade8ddcb6a3a7ac3c3fdf25b5be 299 PIRSF PIRSF003097 1 296 3.0E-81 T 23-04-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 NIDE_RS14050 cb60cade8ddcb6a3a7ac3c3fdf25b5be 299 Pfam PF02687 FtsX-like permease family 176 293 1.9E-7 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 NIDE_RS14865 3274a722d2be69559006c45daf347852 361 PANTHER PTHR37958:SF1 30 361 3.5E-87 T 23-04-2016 NIDE_RS14865 3274a722d2be69559006c45daf347852 361 Pfam PF01699 Sodium/calcium exchanger protein 218 358 5.2E-7 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 NIDE_RS14865 3274a722d2be69559006c45daf347852 361 Pfam PF01699 Sodium/calcium exchanger protein 31 181 1.9E-18 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 NIDE_RS14865 3274a722d2be69559006c45daf347852 361 PANTHER PTHR37958 30 361 3.5E-87 T 23-04-2016 NIDE_RS13800 2718fc24942fbecb450b8231320935c2 464 Pfam PF04932 O-Antigen ligase 226 369 1.8E-10 T 23-04-2016 IPR007016 O-antigen ligase-related NIDE_RS16610 6f123beca1476ec1b384d334e79c7a22 72 Pfam PF09905 Uncharacterized conserved protein (DUF2132) 7 68 9.5E-32 T 23-04-2016 IPR018668 DNA-binding protein VF530-like, bacteria GO:0003677 NIDE_RS16610 6f123beca1476ec1b384d334e79c7a22 72 Gene3D G3DSA:1.10.720.30 14 70 3.1E-28 T 23-04-2016 IPR003034 SAP domain NIDE_RS09925 5fcbd8525caaff6827bd806c8423c2f4 141 PANTHER PTHR30625 12 135 2.0E-26 T 23-04-2016 NIDE_RS09925 5fcbd8525caaff6827bd806c8423c2f4 141 Pfam PF01618 MotA/TolQ/ExbB proton channel family 47 135 1.6E-27 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 NIDE_RS09925 5fcbd8525caaff6827bd806c8423c2f4 141 TIGRFAM TIGR02805 exbB2: tonB-system energizer ExbB 4 138 5.5E-46 T 23-04-2016 IPR014172 TonB-system energizer ExbB type-2 GO:0006810|GO:0016020 NIDE_RS09780 61fe90cab56f30d0212e136210c23909 132 PANTHER PTHR33055:SF3 4 109 5.1E-17 T 23-04-2016 NIDE_RS09780 61fe90cab56f30d0212e136210c23909 132 PANTHER PTHR33055 4 109 5.1E-17 T 23-04-2016 NIDE_RS09780 61fe90cab56f30d0212e136210c23909 132 Pfam PF02371 Transposase IS116/IS110/IS902 family 3 68 8.7E-18 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 NIDE_RS16790 de4272e20a1b50b87f9f3750101f1fb6 261 Pfam PF13557 Putative MetA-pathway of phenol degradation 81 242 1.1E-5 T 23-04-2016 IPR025737 MetA-pathway of phenol degradation, putative NIDE_RS10610 9e2d08d31b070a7e191c8a3f8ef8d0be 147 Gene3D G3DSA:1.20.58.300 17 118 2.3E-7 T 23-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 NIDE_RS10610 9e2d08d31b070a7e191c8a3f8ef8d0be 147 SUPERFAMILY SSF140566 18 117 5.1E-12 T 23-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 NIDE_RS10610 9e2d08d31b070a7e191c8a3f8ef8d0be 147 Pfam PF05130 FlgN protein 16 135 1.2E-13 T 23-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 NIDE_RS16255 3591aa85ab3fc04738988366435446af 125 SUPERFAMILY SSF141371 10 95 2.75E-5 T 23-04-2016 NIDE_RS16255 3591aa85ab3fc04738988366435446af 125 Pfam PF07238 PilZ domain 13 109 5.6E-7 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS17580 40c9eb415b560d023d01cca12b966b35 226 Pfam PF10127 Predicted nucleotidyltransferase 12 159 7.6E-25 T 23-04-2016 IPR018775 Nucleotidyltransferase, predicted NIDE_RS04300 e32742f832c390f2eb4122fdda191098 453 Pfam PF09594 Protein of unknown function (DUF2029) 89 334 1.7E-27 T 23-04-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 NIDE_RS03765 6a301272b8372237908a618645ecd8c3 257 Gene3D G3DSA:1.10.760.10 7 130 1.3E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS03765 6a301272b8372237908a618645ecd8c3 257 SUPERFAMILY SSF46626 139 253 3.84E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS03765 6a301272b8372237908a618645ecd8c3 257 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 33 125 3.3E-11 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS03765 6a301272b8372237908a618645ecd8c3 257 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 154 248 1.2E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS03765 6a301272b8372237908a618645ecd8c3 257 Gene3D G3DSA:1.10.760.10 149 255 3.6E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS03765 6a301272b8372237908a618645ecd8c3 257 SUPERFAMILY SSF46626 16 130 4.07E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 NIDE_RS17910 418cc05d70c921615c7fc3173c701792 233 Gene3D G3DSA:2.40.160.20 73 226 6.5E-6 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS17910 418cc05d70c921615c7fc3173c701792 233 SUPERFAMILY SSF56925 74 233 4.97E-8 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 NIDE_RS11030 66e6d9dfe042240ceda9a60926207b6d 364 Gene3D G3DSA:2.40.160.60 67 243 8.5E-4 T 23-04-2016 NIDE_RS11355 dc9b9cd7ecee82e86d83809c2e4625d4 179 SUPERFAMILY SSF109604 11 127 3.45E-10 T 23-04-2016 NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 Gene3D G3DSA:1.25.40.20 31 223 1.9E-51 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 SMART SM00248 61 90 7.3E-6 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 SMART SM00248 94 123 620.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 SMART SM00248 127 156 0.15 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 SMART SM00248 198 225 3100.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 SMART SM00248 28 57 160.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 SMART SM00248 160 194 240.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 SUPERFAMILY SSF48403 31 223 4.52E-49 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 Pfam PF12796 Ankyrin repeats (3 copies) 100 196 2.2E-10 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 Pfam PF12796 Ankyrin repeats (3 copies) 29 92 3.6E-12 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain NIDE_RS00255 7754b21a20db5ade87c86783439dac4d 225 PANTHER PTHR24198 32 224 1.5E-46 T 23-04-2016 NIDE_RS02995 d87c3064e5410973c67dafa6edf6645b 141 PANTHER PTHR30625 28 137 7.9E-27 T 23-04-2016 NIDE_RS02995 d87c3064e5410973c67dafa6edf6645b 141 Pfam PF01618 MotA/TolQ/ExbB proton channel family 47 136 1.6E-25 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 NIDE_RS02995 d87c3064e5410973c67dafa6edf6645b 141 TIGRFAM TIGR02805 exbB2: tonB-system energizer ExbB 4 138 1.3E-42 T 23-04-2016 IPR014172 TonB-system energizer ExbB type-2 GO:0006810|GO:0016020 NIDE_RS04945 fac39532ef0de240f8c6c94ecbe07142 102 Gene3D G3DSA:3.30.40.10 7 61 4.5E-5 T 23-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type NIDE_RS04945 fac39532ef0de240f8c6c94ecbe07142 102 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 8.7E-30 T 23-04-2016 IPR010696 Protein of unknown function DUF1272 NIDE_RS07150 400a499e13427741958cae052b9a8c68 104 Pfam PF09707 CRISPR-associated protein (Cas_Cas2CT1978) 1 86 6.3E-36 T 23-04-2016 IPR010152 CRISPR-associated protein Cas2 subtype NIDE_RS07150 400a499e13427741958cae052b9a8c68 104 TIGRFAM TIGR01873 cas_CT1978: CRISPR-associated endoribonuclease Cas2, subtype I-E/ECOLI 1 86 2.7E-32 T 23-04-2016 IPR010152 CRISPR-associated protein Cas2 subtype NIDE_RS09050 f470281c05a88ec167f058eedb772233 151 PANTHER PTHR36152 8 136 1.3E-20 T 23-04-2016 NIDE_RS09050 f470281c05a88ec167f058eedb772233 151 Pfam PF05638 Type VI secretion system effector, Hcp 10 136 1.4E-27 T 23-04-2016 IPR008514 Type VI secretion system effector, Hcp NIDE_RS09050 f470281c05a88ec167f058eedb772233 151 Gene3D G3DSA:2.30.110.20 8 141 1.2E-31 T 23-04-2016 IPR008514 Type VI secretion system effector, Hcp NIDE_RS09050 f470281c05a88ec167f058eedb772233 151 SUPERFAMILY SSF141452 8 148 1.28E-31 T 23-04-2016 IPR008514 Type VI secretion system effector, Hcp NIDE_RS12340 e29eeaeb643f12392fdd2b4780156cfd 90 SUPERFAMILY SSF47336 25 84 1.15E-9 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS12340 e29eeaeb643f12392fdd2b4780156cfd 90 Pfam PF00550 Phosphopantetheine attachment site 25 82 7.8E-7 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS12340 e29eeaeb643f12392fdd2b4780156cfd 90 Gene3D G3DSA:1.10.1200.10 24 80 3.7E-11 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain NIDE_RS10900 ced0f750816fa2cf4330323c59016ad2 73 PANTHER PTHR34873 1 73 5.9E-15 T 23-04-2016 NIDE_RS10900 ced0f750816fa2cf4330323c59016ad2 73 SUPERFAMILY SSF54786 5 71 9.02E-18 T 23-04-2016 NIDE_RS10900 ced0f750816fa2cf4330323c59016ad2 73 Gene3D G3DSA:3.30.920.30 4 72 7.2E-22 T 23-04-2016 NIDE_RS10900 ced0f750816fa2cf4330323c59016ad2 73 PANTHER PTHR34873:SF1 1 73 5.9E-15 T 23-04-2016 NIDE_RS10900 ced0f750816fa2cf4330323c59016ad2 73 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 9 66 8.4E-20 T 23-04-2016 IPR012933 HicA mRNA interferase family GO:0003729 NIDE_RS07985 b16f1f1f1651b6ab3ae0c08a119f5c01 501 Pfam PF11074 Domain of unknown function(DUF2779) 307 429 3.7E-35 T 23-04-2016 IPR021301 Domain of unknown functionDUF2779 NIDE_RS03085 3e8332193b9bd3229d9c32f8f9de0d8f 81 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 5 52 1.2E-13 T 23-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 NIDE_RS03085 3e8332193b9bd3229d9c32f8f9de0d8f 81 SUPERFAMILY SSF46955 5 47 4.21E-8 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS03085 3e8332193b9bd3229d9c32f8f9de0d8f 81 Gene3D G3DSA:1.10.10.10 5 43 1.3E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain NIDE_RS03085 3e8332193b9bd3229d9c32f8f9de0d8f 81 Pfam PF12728 Helix-turn-helix domain 5 56 2.2E-13 T 23-04-2016 NIDE_RS06570 0a5d580234ca97fe753256a2ef0036dd 351 Pfam PF13576 Pentapeptide repeats (9 copies) 197 245 9.8E-8 T 23-04-2016 IPR001646 Pentapeptide repeat NIDE_RS17735 6831b83dc6ac854e32eaa1a051a35cd6 183 PRINTS PR00162 Rieske 2Fe-2S subunit signature 109 120 4.2E-10 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 NIDE_RS17735 6831b83dc6ac854e32eaa1a051a35cd6 183 PRINTS PR00162 Rieske 2Fe-2S subunit signature 130 142 4.2E-10 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 NIDE_RS17735 6831b83dc6ac854e32eaa1a051a35cd6 183 PRINTS PR00162 Rieske 2Fe-2S subunit signature 142 154 4.2E-10 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 NIDE_RS17735 6831b83dc6ac854e32eaa1a051a35cd6 183 SUPERFAMILY SSF50022 34 173 2.62E-32 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS17735 6831b83dc6ac854e32eaa1a051a35cd6 183 Gene3D G3DSA:2.102.10.10 21 172 1.7E-38 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS17735 6831b83dc6ac854e32eaa1a051a35cd6 183 Pfam PF00355 Rieske [2Fe-2S] domain 61 157 1.8E-15 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 NIDE_RS17735 6831b83dc6ac854e32eaa1a051a35cd6 183 PANTHER PTHR10134 98 174 3.7E-21 T 23-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 NIDE_RS20875 5c327c18872dc52d2fd4bc06e3c3546e 164 PANTHER PTHR30160 1 164 3.8E-19 T 23-04-2016 NIDE_RS20875 5c327c18872dc52d2fd4bc06e3c3546e 164 PANTHER PTHR30160:SF1 1 164 3.8E-19 T 23-04-2016 NIDE_RS20875 5c327c18872dc52d2fd4bc06e3c3546e 164 SUPERFAMILY SSF53756 1 157 8.63E-32 T 23-04-2016 NIDE_RS20875 5c327c18872dc52d2fd4bc06e3c3546e 164 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 2 119 1.4E-19 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 NIDE_RS20875 5c327c18872dc52d2fd4bc06e3c3546e 164 Gene3D G3DSA:3.40.50.2000 1 157 2.7E-34 T 23-04-2016 NIDE_RS20865 3117d09b496e0b7683a6e9343289ac89 325 Gene3D G3DSA:1.10.3480.10 36 58 7.9E-30 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone NIDE_RS20865 3117d09b496e0b7683a6e9343289ac89 325 Gene3D G3DSA:1.10.3480.10 113 259 7.9E-30 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone NIDE_RS20865 3117d09b496e0b7683a6e9343289ac89 325 Pfam PF02613 Nitrate reductase delta subunit 111 227 3.5E-21 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone NIDE_RS20865 3117d09b496e0b7683a6e9343289ac89 325 SUPERFAMILY SSF89155 116 257 1.57E-31 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone NIDE_RS20865 3117d09b496e0b7683a6e9343289ac89 325 SUPERFAMILY SSF89155 36 62 1.57E-31 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone NIDE_RS09550 cb1bdbf9660b08c0401e1ec2cea2fc66 124 Pfam PF11483 Protein of unknown function (DUF3209) 1 124 1.1E-51 T 23-04-2016 IPR021577 Protein of unknown function DUF3209 NIDE_RS20560 95d3be4f7ae66d5ccd8d5bcf2cfe621d 403 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 117 231 1.0E-32 T 23-04-2016 IPR031571 Flp pilus assembly protein RcpC/CpaB domain NIDE_RS20560 95d3be4f7ae66d5ccd8d5bcf2cfe621d 403 SMART SM00858 47 109 3.4E-9 T 23-04-2016 IPR013974 SAF domain NIDE_RS20560 95d3be4f7ae66d5ccd8d5bcf2cfe621d 403 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 9 248 3.3E-60 T 23-04-2016 IPR017592 Pilus assembly, Flp-type CpaB NIDE_RS20560 95d3be4f7ae66d5ccd8d5bcf2cfe621d 403 Pfam PF08666 SAF domain 49 108 5.4E-7 T 23-04-2016 IPR013974 SAF domain NIDE_RS03635 cafbb8f48a0a32df5b83e3492cf535c5 197 Pfam PF02620 Uncharacterized ACR, COG1399 55 188 3.4E-26 T 23-04-2016 IPR003772 Protein of unknown function DUF177 NIDE_RS03635 cafbb8f48a0a32df5b83e3492cf535c5 197 PANTHER PTHR34374 39 179 6.5E-24 T 23-04-2016 NIDE_RS14095 fb671652ba0cb7ef8e271aa04b99b0af 86 Pfam PF14209 Domain of unknown function (DUF4321) 38 83 4.5E-14 T 23-04-2016 IPR025470 Protein of unknown function DUF4321 NIDE_RS12955 2983eb6ed9acbe8326d929b2139e1e20 208 Pfam PF05137 Fimbrial assembly protein (PilN) 127 201 2.0E-6 T 23-04-2016 IPR007813 Fimbrial assembly PilN NIDE_RS05795 2b6dc72361411ce0393b76aa06debf50 275 Pfam PF01145 SPFH domain / Band 7 family 24 214 3.0E-13 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS05795 2b6dc72361411ce0393b76aa06debf50 275 SUPERFAMILY SSF117892 59 197 3.01E-8 T 23-04-2016 IPR001107 Band 7 domain NIDE_RS10485 6b9016f00de8f24cf6663a49aef1e42a 212 SUPERFAMILY SSF158791 147 208 2.75E-6 T 23-04-2016 NIDE_RS10485 6b9016f00de8f24cf6663a49aef1e42a 212 Gene3D G3DSA:1.25.60.10 149 208 5.4E-5 T 23-04-2016 NIDE_RS03375 fb4636245803bd4ece1a7dff5efeda3e 331 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 8 313 1.4E-19 T 23-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD NIDE_RS03375 fb4636245803bd4ece1a7dff5efeda3e 331 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 7 313 2.8E-33 T 23-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD NIDE_RS21165 8ee26ab27606e537742d42f98867a9b3 178 Pfam PF01337 Barstar (barnase inhibitor) 39 122 8.0E-25 T 23-04-2016 IPR000468 Barstar (barnase inhibitor) NIDE_RS21165 8ee26ab27606e537742d42f98867a9b3 178 SUPERFAMILY SSF52038 39 121 2.49E-19 T 23-04-2016 IPR000468 Barstar (barnase inhibitor) NIDE_RS21165 8ee26ab27606e537742d42f98867a9b3 178 Gene3D G3DSA:3.30.370.10 39 122 3.0E-19 T 23-04-2016 IPR000468 Barstar (barnase inhibitor) NIDE_RS02330 488fc6a343bfdbeda995388a12c35a82 285 Pfam PF01061 ABC-2 type transporter 39 245 1.2E-23 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 NIDE_RS02330 488fc6a343bfdbeda995388a12c35a82 285 PANTHER PTHR30413:SF8 1 285 1.3E-90 T 23-04-2016 NIDE_RS02330 488fc6a343bfdbeda995388a12c35a82 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 166 190 2.9E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS02330 488fc6a343bfdbeda995388a12c35a82 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 223 242 2.9E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS02330 488fc6a343bfdbeda995388a12c35a82 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 203 222 2.9E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS02330 488fc6a343bfdbeda995388a12c35a82 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 59 80 2.9E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS02330 488fc6a343bfdbeda995388a12c35a82 285 PRINTS PR00164 ABC-2 type transport system membrane protein signature 90 112 2.9E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS02330 488fc6a343bfdbeda995388a12c35a82 285 PANTHER PTHR30413 1 285 1.3E-90 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 NIDE_RS01560 d6aa97a51582aa39a3bc59c6fcb71bca 335 Pfam PF02486 Replication initiation factor 98 294 5.5E-35 T 23-04-2016 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 NIDE_RS03230 1d1d096c662e58e588099427b91d16db 342 SUPERFAMILY SSF50939 113 335 1.28E-30 T 23-04-2016 IPR011040 Sialidases NIDE_RS03230 1d1d096c662e58e588099427b91d16db 342 SUPERFAMILY SSF50939 35 109 3.92E-9 T 23-04-2016 IPR011040 Sialidases NIDE_RS03230 1d1d096c662e58e588099427b91d16db 342 Gene3D G3DSA:2.130.10.140 38 336 1.9E-62 T 23-04-2016 NIDE_RS01985 cb72f1582bd52bea29d855828506b11d 305 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 2 32 1.0E-6 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS01985 cb72f1582bd52bea29d855828506b11d 305 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 59 101 1.7E-10 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS01985 cb72f1582bd52bea29d855828506b11d 305 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 179 220 1.4E-11 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 NIDE_RS04815 87c433d1a3fefbb56829d0a53ccc809b 303 SUPERFAMILY SSF103481 45 143 1.83E-10 T 23-04-2016 NIDE_RS04815 87c433d1a3fefbb56829d0a53ccc809b 303 PANTHER PTHR12715 1 298 6.3E-53 T 23-04-2016 NIDE_RS04815 87c433d1a3fefbb56829d0a53ccc809b 303 SUPERFAMILY SSF103481 191 297 6.15E-15 T 23-04-2016 NIDE_RS04815 87c433d1a3fefbb56829d0a53ccc809b 303 Pfam PF00892 EamA-like transporter family 12 141 7.0E-17 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 NIDE_RS04815 87c433d1a3fefbb56829d0a53ccc809b 303 Pfam PF00892 EamA-like transporter family 156 293 3.6E-23 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 NIDE_RS16310 377181665c95c7a1e3d62b48b6445cca 1011 SUPERFAMILY SSF53300 822 1009 3.52E-19 T 23-04-2016 IPR002035 von Willebrand factor, type A NIDE_RS16310 377181665c95c7a1e3d62b48b6445cca 1011 PANTHER PTHR41248:SF1 720 1009 6.3E-39 T 23-04-2016 NIDE_RS16310 377181665c95c7a1e3d62b48b6445cca 1011 Pfam PF00092 von Willebrand factor type A domain 824 977 5.5E-6 T 23-04-2016 IPR002035 von Willebrand factor, type A NIDE_RS16310 377181665c95c7a1e3d62b48b6445cca 1011 PANTHER PTHR41248 720 1009 6.3E-39 T 23-04-2016 NIDE_RS16310 377181665c95c7a1e3d62b48b6445cca 1011 SMART SM00327 821 1010 4.4E-11 T 23-04-2016 IPR002035 von Willebrand factor, type A NIDE_RS16310 377181665c95c7a1e3d62b48b6445cca 1011 Gene3D G3DSA:3.40.50.410 824 986 4.7E-10 T 23-04-2016 IPR002035 von Willebrand factor, type A NIDE_RS16160 ce0b5f8707727eac946e027a83c3daed 412 PANTHER PTHR30469 6 396 5.3E-160 T 23-04-2016 NIDE_RS16160 ce0b5f8707727eac946e027a83c3daed 412 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 81 303 1.6E-12 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIDE_RS16160 ce0b5f8707727eac946e027a83c3daed 412 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 56 384 2.0E-73 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 NIDE_RS16160 ce0b5f8707727eac946e027a83c3daed 412 Gene3D G3DSA:2.40.50.100 80 114 3.1E-21 T 23-04-2016 NIDE_RS16160 ce0b5f8707727eac946e027a83c3daed 412 Gene3D G3DSA:2.40.50.100 189 223 3.1E-21 T 23-04-2016 NIDE_RS16160 ce0b5f8707727eac946e027a83c3daed 412 PANTHER PTHR30469:SF12 6 396 5.3E-160 T 23-04-2016 IPR022824 Multidrug resistance protein MdtA NIDE_RS16160 ce0b5f8707727eac946e027a83c3daed 412 SUPERFAMILY SSF111369 71 307 2.35E-56 T 23-04-2016 NIDE_RS06935 2c01feac2288dd70de24c28474f28f04 124 Gene3D G3DSA:2.40.10.220 43 119 5.9E-5 T 23-04-2016 NIDE_RS06935 2c01feac2288dd70de24c28474f28f04 124 Pfam PF07238 PilZ domain 14 119 4.1E-9 T 23-04-2016 IPR009875 PilZ domain GO:0035438 NIDE_RS06935 2c01feac2288dd70de24c28474f28f04 124 SUPERFAMILY SSF141371 13 119 6.08E-9 T 23-04-2016 NIDE_RS00575 dbef5dcb59be3036fa9ad00e67dd3736 116 Pfam PF10983 Protein of unknown function (DUF2793) 27 110 2.2E-30 T 23-04-2016 IPR021251 Protein of unknown function DUF2793 NIDE_RS11105 296bf590d1967c8f4b43a90d95f55648 177 Pfam PF03843 Outer membrane lipoprotein Slp family 16 153 2.5E-16 T 23-04-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 NIDE_RS00500 13c30a8c0a2d05f7fc83ea14e1d22e45 334 Pfam PF03864 Phage major capsid protein E 10 331 2.0E-110 T 23-04-2016 IPR005564 Major capsid protein GpE GO:0019028 NIDE_RS00330 4b15f9fb6acd814f9af0531efd1856f4 158 SUPERFAMILY SSF109709 75 151 6.67E-8 T 23-04-2016 NIDE_RS14460 4903f8378bb17c35a64cdac9c98ded6d 539 SUPERFAMILY SSF56935 383 537 5.31E-5 T 23-04-2016 NIDE_RS14460 4903f8378bb17c35a64cdac9c98ded6d 539 SUPERFAMILY SSF56935 328 350 5.31E-5 T 23-04-2016 NIDE_RS14460 4903f8378bb17c35a64cdac9c98ded6d 539 SUPERFAMILY SSF56935 130 267 5.31E-5 T 23-04-2016 NIDE_RS14460 4903f8378bb17c35a64cdac9c98ded6d 539 Gene3D G3DSA:2.40.160.10 86 511 5.4E-26 T 23-04-2016 IPR023614 Porin domain NIDE_RS19465 43ed3d79273362850402b7be65cb07d6 73 Gene3D G3DSA:1.25.40.10 6 68 1.6E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19465 43ed3d79273362850402b7be65cb07d6 73 SUPERFAMILY SSF48452 6 67 2.2E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS02915 12f7c814f97e05ecf600335c53853229 193 PANTHER PTHR10681 44 187 8.6E-37 T 23-04-2016 NIDE_RS02915 12f7c814f97e05ecf600335c53853229 193 SUPERFAMILY SSF52833 42 184 1.16E-41 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS02915 12f7c814f97e05ecf600335c53853229 193 Gene3D G3DSA:3.40.30.10 23 181 8.9E-47 T 23-04-2016 IPR012336 Thioredoxin-like fold NIDE_RS02915 12f7c814f97e05ecf600335c53853229 193 Pfam PF00578 AhpC/TSA family 47 162 9.0E-32 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 NIDE_RS02915 12f7c814f97e05ecf600335c53853229 193 PANTHER PTHR10681:SF104 44 187 8.6E-37 T 23-04-2016 NIDE_RS07705 a89f84f17681efa81d913a9640ead976 285 Gene3D G3DSA:2.50.20.10 176 281 1.7E-5 T 23-04-2016 NIDE_RS13635 e88711364acefc8832558be3e43179bb 309 SMART SM01133 40 288 1.6E-43 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 NIDE_RS13635 e88711364acefc8832558be3e43179bb 309 Pfam PF01791 DeoC/LacD family aldolase 41 288 1.8E-32 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 NIDE_RS13635 e88711364acefc8832558be3e43179bb 309 SUPERFAMILY SSF51569 20 304 9.52E-63 T 23-04-2016 NIDE_RS13635 e88711364acefc8832558be3e43179bb 309 PIRSF PIRSF038992 20 305 9.4E-70 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 NIDE_RS13635 e88711364acefc8832558be3e43179bb 309 Gene3D G3DSA:3.20.20.70 20 306 5.7E-77 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 NIDE_RS20155 d2f9cb98a2a205af333119c5c51a04c7 361 PANTHER PTHR36699 132 337 1.1E-12 T 23-04-2016 NIDE_RS20155 d2f9cb98a2a205af333119c5c51a04c7 361 SUPERFAMILY SSF141523 198 258 1.83E-13 T 23-04-2016 NIDE_RS20155 d2f9cb98a2a205af333119c5c51a04c7 361 SUPERFAMILY SSF141523 295 338 1.83E-13 T 23-04-2016 NIDE_RS20155 d2f9cb98a2a205af333119c5c51a04c7 361 Pfam PF03734 L,D-transpeptidase catalytic domain 201 337 1.2E-12 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 NIDE_RS20155 d2f9cb98a2a205af333119c5c51a04c7 361 Gene3D G3DSA:2.40.440.10 199 338 2.6E-15 T 23-04-2016 NIDE_RS09915 3b3c12c25e38fabcfc1717e208a978f2 343 SUPERFAMILY SSF74653 262 319 4.58E-9 T 23-04-2016 NIDE_RS09915 3b3c12c25e38fabcfc1717e208a978f2 343 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 262 341 5.0E-11 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS09915 3b3c12c25e38fabcfc1717e208a978f2 343 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 263 342 1.4E-10 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 NIDE_RS03510 d48cf53b7aaf8d1c9b6d471724895c48 289 Pfam PF08478 POTRA domain, FtsQ-type 81 147 5.5E-15 T 23-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type NIDE_RS03510 d48cf53b7aaf8d1c9b6d471724895c48 289 PANTHER PTHR37820 78 217 1.5E-12 T 23-04-2016 NIDE_RS00750 57598764f8a4d9f3d345cf89623bb13f 169 Pfam PF05066 HB1, ASXL, restriction endonuclease HTH domain 101 160 9.9E-12 T 23-04-2016 IPR007759 HB1/Asxl, restriction endonuclease HTH domain GO:0006351|GO:0006355 NIDE_RS01300 d19ebb6d852c0231070bc203a4e97fa5 110 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 69 103 1.6E-11 T 23-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 NIDE_RS01300 d19ebb6d852c0231070bc203a4e97fa5 110 SUPERFAMILY SSF109635 5 67 4.32E-12 T 23-04-2016 NIDE_RS01300 d19ebb6d852c0231070bc203a4e97fa5 110 SUPERFAMILY SSF57716 71 107 5.7E-10 T 23-04-2016 NIDE_RS01300 d19ebb6d852c0231070bc203a4e97fa5 110 PANTHER PTHR33823:SF2 27 107 7.8E-28 T 23-04-2016 NIDE_RS01300 d19ebb6d852c0231070bc203a4e97fa5 110 PANTHER PTHR33823 27 107 7.8E-28 T 23-04-2016 NIDE_RS01300 d19ebb6d852c0231070bc203a4e97fa5 110 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 74 98 - T 23-04-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site NIDE_RS00385 60a70ea47959a55df0de878fd6dd9d11 281 Pfam PF13479 AAA domain 18 244 3.9E-45 T 23-04-2016 NIDE_RS02875 7f9fc283313b3e2cfe588366fc4adf8a 720 Gene3D G3DSA:3.40.390.10 366 398 1.6E-6 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 NIDE_RS02875 7f9fc283313b3e2cfe588366fc4adf8a 720 SUPERFAMILY SSF55486 280 401 3.54E-8 T 23-04-2016 NIDE_RS20855 6819f0745e1b458886bf86ecc4c79e5f 332 Pfam PF04972 BON domain 192 250 3.7E-9 T 23-04-2016 IPR007055 BON domain NIDE_RS20855 6819f0745e1b458886bf86ecc4c79e5f 332 Pfam PF04972 BON domain 262 328 3.5E-10 T 23-04-2016 IPR007055 BON domain NIDE_RS00900 ce4f01c7514e2dabc52838f1b1c08cdf 160 Pfam PF13664 Domain of unknown function (DUF4149) 15 106 4.2E-12 T 23-04-2016 IPR025423 Domain of unknown function DUF4149 NIDE_RS18545 a52143fa68e7df5c54816446363539d7 206 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 6 202 9.3E-89 T 23-04-2016 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 NIDE_RS18545 a52143fa68e7df5c54816446363539d7 206 Gene3D G3DSA:3.90.1470.10 16 131 5.2E-41 T 23-04-2016 NIDE_RS18545 a52143fa68e7df5c54816446363539d7 206 Pfam PF00702 haloacid dehalogenase-like hydrolase 59 166 6.9E-9 T 23-04-2016 NIDE_RS18545 a52143fa68e7df5c54816446363539d7 206 SUPERFAMILY SSF56784 6 194 2.1E-38 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS18545 a52143fa68e7df5c54816446363539d7 206 Gene3D G3DSA:3.40.50.1000 132 170 3.5E-7 T 23-04-2016 IPR023214 HAD-like domain NIDE_RS18725 1fcf10fd730fb4a7eedb1c98870d07f4 211 PANTHER PTHR30353 9 211 3.7E-55 T 23-04-2016 IPR032818 DedA family NIDE_RS18725 1fcf10fd730fb4a7eedb1c98870d07f4 211 Pfam PF09335 SNARE associated Golgi protein 41 166 1.0E-22 T 23-04-2016 IPR032816 SNARE associated Golgi protein NIDE_RS18725 1fcf10fd730fb4a7eedb1c98870d07f4 211 PANTHER PTHR30353:SF13 9 211 3.7E-55 T 23-04-2016 NIDE_RS21050 70c306f18a2dc8e53617b9350b58609c 529 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 205 298 1.8E-12 T 23-04-2016 IPR026392 Exosortase/Archaeosortase domain NIDE_RS21050 70c306f18a2dc8e53617b9350b58609c 529 TIGRFAM TIGR02602 8TM_EpsH: exosortase 57 292 8.4E-48 T 23-04-2016 IPR013426 Exosortase, EpsH NIDE_RS21050 70c306f18a2dc8e53617b9350b58609c 529 TIGRFAM TIGR02914 EpsI_fam: EpsI family protein 361 528 6.8E-28 T 23-04-2016 IPR014263 Methanolan biosynthesis EpsI NIDE_RS21050 70c306f18a2dc8e53617b9350b58609c 529 Pfam PF11984 Protein of unknown function (DUF3485) 334 527 3.3E-37 T 23-04-2016 IPR014263 Methanolan biosynthesis EpsI NIDE_RS21050 70c306f18a2dc8e53617b9350b58609c 529 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 43 297 2.0E-53 T 23-04-2016 IPR019127 Exosortase EpsH-related KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- NIDE_RS16885 43d8f7f8cd904d38d877f0418df14fce 303 Pfam PF03366 YEATS family 223 291 5.5E-11 T 23-04-2016 IPR005033 YEATS GO:0006355 NIDE_RS19040 b789d33d7a4e424cb155cae7e805a200 540 SUPERFAMILY SSF56281 215 365 4.38E-12 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS19040 b789d33d7a4e424cb155cae7e805a200 540 Pfam PF13483 Beta-lactamase superfamily domain 218 360 1.1E-5 T 23-04-2016 NIDE_RS19040 b789d33d7a4e424cb155cae7e805a200 540 Gene3D G3DSA:3.60.15.10 216 278 2.2E-16 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS19040 b789d33d7a4e424cb155cae7e805a200 540 Gene3D G3DSA:3.60.15.10 311 392 2.2E-16 T 23-04-2016 IPR001279 Metallo-beta-lactamase NIDE_RS09500 523206bf36ca4035254c82e2a38553f6 232 SUPERFAMILY SSF54001 44 182 2.45E-7 T 23-04-2016 NIDE_RS09500 523206bf36ca4035254c82e2a38553f6 232 Gene3D G3DSA:3.90.1720.10 43 153 1.2E-7 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- NIDE_RS17670 df6bb9c1ba961fa7989d2f0f9ec2267f 102 Pfam PF12732 YtxH-like protein 15 78 4.8E-12 T 23-04-2016 IPR024623 Uncharacterised protein family YtxH NIDE_RS03455 63b73379a63543174d31ee5692296064 110 Pfam PF04999 Cell division protein FtsL 12 82 2.9E-8 T 23-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 NIDE_RS12430 66643c550b409059be80848a0006a80a 410 Pfam PF10082 Putative beta-barrel porin 2 29 407 7.3E-32 T 23-04-2016 IPR018759 Putative beta-barrel porin 2 NIDE_RS18600 029b5e6d6a387b79cd3a052175904534 99 PIRSF PIRSF028440 1 92 2.5E-35 T 23-04-2016 IPR014546 Uncharacterised conserved protein, lipid A biosynthesis NIDE_RS18600 029b5e6d6a387b79cd3a052175904534 99 SMART SM01259 10 81 7.4E-42 T 23-04-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 NIDE_RS18600 029b5e6d6a387b79cd3a052175904534 99 ProDom PD339292 LIPID A SYNTHASE LIPID-A-DISACCHARIDE TRANSFERASE GLYCOSYLTRANSFERASE BIOSYNTHESIS N-TERMINAL BIOSYNTHESIS SYNTHESIS 7 84 4.0E-26 T 23-04-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 NIDE_RS18600 029b5e6d6a387b79cd3a052175904534 99 Pfam PF07578 Lipid A Biosynthesis N-terminal domain 10 80 7.4E-32 T 23-04-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 NIDE_RS05265 b7a8fbdf7e2b626700c6fda5617a20e8 73 Pfam PF12088 Protein of unknown function (DUF3565) 6 62 1.5E-33 T 23-04-2016 IPR021948 Protein of unknown function DUF3565 NIDE_RS20785 11894d3897ad51f77adb105cb38009a4 159 Pfam PF11220 Protein of unknown function (DUF3015) 38 143 8.5E-13 T 23-04-2016 IPR021383 Protein of unknown function DUF3015 NIDE_RS16740 2822984e5e3b682ac0cdbfafa2e933cd 304 Pfam PF03547 Membrane transport protein 154 287 1.7E-8 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 NIDE_RS16740 2822984e5e3b682ac0cdbfafa2e933cd 304 PANTHER PTHR36838:SF1 1 299 2.1E-30 T 23-04-2016 NIDE_RS16740 2822984e5e3b682ac0cdbfafa2e933cd 304 PANTHER PTHR36838 1 299 2.1E-30 T 23-04-2016 NIDE_RS09215 6299e0ab008ed39f63fd5cccbdbd390f 326 Pfam PF03783 Curli production assembly/transport component CsgG 74 236 1.8E-6 T 23-04-2016 IPR005534 Curli production assembly/transport component CsgG GO:0030288 NIDE_RS06465 6f4b9a04ddd346735b9dd72cd5ee3cd5 107 Pfam PF13471 Transglutaminase-like superfamily 5 90 2.8E-19 T 23-04-2016 IPR032708 Microcin J25-processing protein McjB, C-terminal NIDE_RS11985 5187054822c295942842e7e21bcd0c17 93 SUPERFAMILY SSF143011 2 84 3.92E-11 T 23-04-2016 NIDE_RS11985 5187054822c295942842e7e21bcd0c17 93 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 38 80 3.6E-6 T 23-04-2016 IPR007711 Toxin HigB-1 NIDE_RS10600 fc1bc8542ef929784d959dacac9d2aab 109 Pfam PF10135 Rod binding protein 58 98 7.1E-8 T 23-04-2016 IPR019301 Flagellar protein FlgJ, N-terminal NIDE_RS15080 0899c1508542ecce9c74ef80b9143989 225 Pfam PF11249 Protein of unknown function (DUF3047) 57 199 2.1E-15 T 23-04-2016 IPR021409 Protein of unknown function DUF3047 NIDE_RS18950 15f2987e9f756bcc12764168cc5c280d 185 Pfam PF02169 LPP20 lipoprotein 67 151 1.5E-6 T 23-04-2016 IPR024952 Lipoprotein LPP20-like NIDE_RS13605 9e8c2d40ba60586e517ac9aa6f5ef3d4 98 Pfam PF07769 psiF repeat 65 97 7.7E-18 T 23-04-2016 IPR011690 Phosphate-starvation-induced PsiF repeat NIDE_RS13605 9e8c2d40ba60586e517ac9aa6f5ef3d4 98 Pfam PF07769 psiF repeat 20 55 5.8E-14 T 23-04-2016 IPR011690 Phosphate-starvation-induced PsiF repeat NIDE_RS07240 ec8af4f1c9f899f387d8a38448784fa0 87 Pfam PF02597 ThiS family 5 83 4.9E-14 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 NIDE_RS07240 ec8af4f1c9f899f387d8a38448784fa0 87 Gene3D G3DSA:3.10.20.30 1 83 1.1E-18 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS07240 ec8af4f1c9f899f387d8a38448784fa0 87 PANTHER PTHR33359 1 83 3.6E-17 T 23-04-2016 NIDE_RS07240 ec8af4f1c9f899f387d8a38448784fa0 87 SUPERFAMILY SSF54285 1 83 1.28E-15 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NIDE_RS05350 08a0938a667f88259cbb5047a4293d9d 200 Pfam PF11845 Protein of unknown function (DUF3365) 23 195 1.0E-15 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS13305 3652be7df2f43afed614d85a99e4fec5 118 Pfam PF06155 Protein of unknown function (DUF971) 16 96 7.4E-25 T 23-04-2016 IPR010376 Domain of unknown function DUF971 Reactome: REACT_13|UniPathway: UPA00118 NIDE_RS00970 1c4bc7d935c52b16e4f9dba257ba0c73 177 Pfam PF11086 Protein of unknown function (DUF2878) 5 160 1.9E-44 T 23-04-2016 IPR021306 Protein of unknown function DUF2878 NIDE_RS00910 1fcacaf24cd7f935998f9674872e5816 171 Gene3D G3DSA:1.25.40.10 38 99 3.4E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS15995 cf7cd173f033293c4816f2189fcbc20c 328 Gene3D G3DSA:1.10.3680.10 10 119 1.0E-13 T 23-04-2016 IPR029024 TerB-like NIDE_RS15995 cf7cd173f033293c4816f2189fcbc20c 328 SUPERFAMILY SSF158682 6 119 8.76E-15 T 23-04-2016 IPR029024 TerB-like NIDE_RS15925 bc816b07e636f344949492d53e074e20 98 Gene3D G3DSA:3.10.20.30 2 76 2.5E-6 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS04910 1ff4b644f06358cfbb364cf9ec60f8ed 625 Gene3D G3DSA:3.30.2010.10 104 191 2.1E-9 T 23-04-2016 NIDE_RS04910 1ff4b644f06358cfbb364cf9ec60f8ed 625 Pfam PF01435 Peptidase family M48 156 343 1.3E-15 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 NIDE_RS09265 23d82dcd2130f6f9015b6b17c49874b8 802 SUPERFAMILY SSF51126 51 267 3.08E-14 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor NIDE_RS09265 23d82dcd2130f6f9015b6b17c49874b8 802 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 65 140 8.9E-17 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS09265 23d82dcd2130f6f9015b6b17c49874b8 802 SUPERFAMILY SSF141072 316 383 1.44E-5 T 23-04-2016 NIDE_RS09265 23d82dcd2130f6f9015b6b17c49874b8 802 SMART SM00912 27 146 2.1E-11 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS09265 23d82dcd2130f6f9015b6b17c49874b8 802 Pfam PF05860 haemagglutination activity domain 46 144 7.2E-18 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal NIDE_RS03995 40dfaee3803b375841ff07ea8f193d3c 342 Pfam PF11383 Protein of unknown function (DUF3187) 168 340 1.6E-14 T 23-04-2016 IPR021523 Protein of unknown function DUF3187 NIDE_RS03995 40dfaee3803b375841ff07ea8f193d3c 342 Pfam PF11383 Protein of unknown function (DUF3187) 20 130 3.2E-6 T 23-04-2016 IPR021523 Protein of unknown function DUF3187 NIDE_RS01005 b9caf00b5703f49c306e268b100ae7eb 308 Pfam PF09992 Phosphodiester glycosidase 106 252 7.5E-6 T 23-04-2016 IPR018711 Phosphodiester glycosidase NIDE_RS01330 88bf984cb4dacce5e6dfa87e14e4b748 116 Pfam PF10711 Hypothetical protein (DUF2513) 1 95 9.0E-24 T 23-04-2016 IPR019650 Protein of unknown function DUF2513 NIDE_RS05145 9a736544171a47d1b6cf8acf6e2926f4 259 Pfam PF11845 Protein of unknown function (DUF3365) 96 256 2.6E-22 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS20075 ef3b4a7e0e0472a872fa3a70303b9bba 389 SUPERFAMILY SSF116734 8 194 4.09E-23 T 23-04-2016 NIDE_RS20075 ef3b4a7e0e0472a872fa3a70303b9bba 389 SUPERFAMILY SSF116734 251 382 1.36E-16 T 23-04-2016 NIDE_RS19175 4e11acfda4f0f7a269e16019111d7a76 1624 Gene3D G3DSA:1.25.40.10 32 153 2.2E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS19175 4e11acfda4f0f7a269e16019111d7a76 1624 SUPERFAMILY SSF48452 32 179 4.38E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS16045 e069b0298c0c034a43f80e8f56ba3004 162 Pfam PF16798 Domain of unknown function (DUF5069) 9 145 7.2E-41 T 23-04-2016 IPR031849 Domain of unknown function DUF5069 NIDE_RS13080 1ed16849bd52d32f26b1267655bbbf22 455 Pfam PF04932 O-Antigen ligase 203 342 4.8E-14 T 23-04-2016 IPR007016 O-antigen ligase-related NIDE_RS14410 e89db3148e52639027775cc9a9cb5c10 230 Pfam PF05818 Enterobacterial TraT complement resistance protein 20 188 7.7E-46 T 23-04-2016 IPR008874 Enterobacterial TraT complement resistance GO:0019867|GO:0046999 NIDE_RS14410 e89db3148e52639027775cc9a9cb5c10 230 Pfam PF05818 Enterobacterial TraT complement resistance protein 191 230 3.2E-9 T 23-04-2016 IPR008874 Enterobacterial TraT complement resistance GO:0019867|GO:0046999 NIDE_RS08915 154a2de97fe9ce57bdd4ee5e170eac6b 251 Pfam PF07589 PEP-CTERM motif 219 239 2.7E-5 T 23-04-2016 IPR013424 PEP-CTERM protein-sorting domain NIDE_RS08915 154a2de97fe9ce57bdd4ee5e170eac6b 251 Gene3D G3DSA:2.60.120.260 52 192 1.8E-6 T 23-04-2016 IPR008979 Galactose-binding domain-like NIDE_RS11035 c2a91271c882f1e6f5ab7452fe290376 506 PANTHER PTHR32309 307 468 1.7E-30 T 23-04-2016 NIDE_RS11035 c2a91271c882f1e6f5ab7452fe290376 506 PANTHER PTHR32309 4 247 1.7E-30 T 23-04-2016 NIDE_RS11035 c2a91271c882f1e6f5ab7452fe290376 506 PANTHER PTHR32309:SF13 307 468 1.7E-30 T 23-04-2016 NIDE_RS11035 c2a91271c882f1e6f5ab7452fe290376 506 PANTHER PTHR32309:SF13 4 247 1.7E-30 T 23-04-2016 NIDE_RS09370 db79179b2d5bcdc13c8101808b38381c 381 Gene3D G3DSA:2.40.160.60 32 255 9.9E-11 T 23-04-2016 NIDE_RS09370 db79179b2d5bcdc13c8101808b38381c 381 Pfam PF13729 F plasmid transfer operon, TraF, protein 54 297 4.0E-23 T 23-04-2016 IPR032811 Putative conjugal transfer protein TraF-related NIDE_RS09370 db79179b2d5bcdc13c8101808b38381c 381 SUPERFAMILY SSF56935 32 321 1.52E-5 T 23-04-2016 NIDE_RS04045 72396a5ca24d7c3ed05fb601a1d0e390 167 Gene3D G3DSA:3.40.50.2000 38 115 3.3E-5 T 23-04-2016 NIDE_RS04045 72396a5ca24d7c3ed05fb601a1d0e390 167 SUPERFAMILY SSF53756 10 165 2.62E-20 T 23-04-2016 NIDE_RS04045 72396a5ca24d7c3ed05fb601a1d0e390 167 Pfam PF13692 Glycosyl transferases group 1 43 133 1.6E-9 T 23-04-2016 NIDE_RS09535 3ec8266cbbfa722f2b5474350eab9ac6 83 Pfam PF12732 YtxH-like protein 17 70 2.2E-13 T 23-04-2016 IPR024623 Uncharacterised protein family YtxH NIDE_RS16800 e1b335dbd148f60638397ecf735c4256 198 Pfam PF14342 Domain of unknown function (DUF4396) 58 187 1.3E-40 T 23-04-2016 IPR025509 Domain of unknown function DUF4396 NIDE_RS04055 026904baccb3a7f2076dfeb14f794c34 365 PANTHER PTHR34847 35 364 3.3E-67 T 23-04-2016 NIDE_RS04055 026904baccb3a7f2076dfeb14f794c34 365 Pfam PF16861 Carbamoyltransferase C-terminus 182 357 9.4E-52 T 23-04-2016 IPR031730 Carbamoyltransferase, C-terminal NIDE_RS04055 026904baccb3a7f2076dfeb14f794c34 365 Pfam PF02543 Carbamoyltransferase N-terminus 59 128 5.8E-8 T 23-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 NIDE_RS11480 0536ca04a402516d97b474b45708384a 116 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 22 108 5.0E-13 T 23-04-2016 IPR009241 Toxin HigB-like NIDE_RS09480 df2163f01567a257cfdd35a80e3f538a 143 Gene3D G3DSA:2.60.40.420 31 113 2.6E-4 T 23-04-2016 IPR008972 Cupredoxin NIDE_RS00190 52ea8e1555e5c2b60c3b2bb5d89d6ae0 145 Pfam PF13801 Heavy-metal resistance 10 130 1.6E-9 T 23-04-2016 IPR025961 Heavy-metal resistance protein NIDE_RS19995 a0a4c14996c341ab0a70cfb07fd08e7d 120 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 4 112 2.6E-37 T 23-04-2016 IPR018745 Domain of unknown function DUF2294 NIDE_RS18635 074a7e09e0beb414832d8279e3090950 110 Gene3D G3DSA:3.40.390.30 1 95 9.1E-34 T 23-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 NIDE_RS18635 074a7e09e0beb414832d8279e3090950 110 SUPERFAMILY SSF55486 1 96 1.73E-30 T 23-04-2016 NIDE_RS18635 074a7e09e0beb414832d8279e3090950 110 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 2 94 7.1E-28 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 NIDE_RS18635 074a7e09e0beb414832d8279e3090950 110 Pfam PF02130 Uncharacterized protein family UPF0054 1 94 2.9E-30 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 NIDE_RS18635 074a7e09e0beb414832d8279e3090950 110 PANTHER PTHR22881 1 94 6.4E-28 T 23-04-2016 NIDE_RS01050 34bc824ae5015ff67b342384cb17b96a 174 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 17 161 2.1E-30 T 23-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 NIDE_RS01050 34bc824ae5015ff67b342384cb17b96a 174 PANTHER PTHR33269:SF1 1 173 2.4E-38 T 23-04-2016 NIDE_RS01050 34bc824ae5015ff67b342384cb17b96a 174 PANTHER PTHR33269 1 173 2.4E-38 T 23-04-2016 NIDE_RS19350 aa4f420def10097ebf097d7969f6ac71 136 Gene3D G3DSA:3.30.450.20 16 112 2.9E-4 T 23-04-2016 NIDE_RS17300 f3e8cac65aa865d32dd5f57e1f89f9ae 249 PANTHER PTHR30060 1 236 4.5E-112 T 23-04-2016 NIDE_RS17300 f3e8cac65aa865d32dd5f57e1f89f9ae 249 PANTHER PTHR30060:SF1 1 236 4.5E-112 T 23-04-2016 NIDE_RS17300 f3e8cac65aa865d32dd5f57e1f89f9ae 249 Pfam PF03741 Integral membrane protein TerC family 16 203 3.9E-46 T 23-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 NIDE_RS06345 99f6aa27bef92604d9f988b5b745412b 388 Gene3D G3DSA:3.20.20.80 97 209 3.2E-7 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 NIDE_RS06345 99f6aa27bef92604d9f988b5b745412b 388 SUPERFAMILY SSF51445 98 371 3.69E-8 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily NIDE_RS00355 7d345e061785b06caa2eb9cc3819752a 92 SUPERFAMILY SSF47413 1 65 2.59E-11 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS00355 7d345e061785b06caa2eb9cc3819752a 92 Gene3D G3DSA:1.10.260.40 3 78 2.6E-14 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS00355 7d345e061785b06caa2eb9cc3819752a 92 Pfam PF12844 Helix-turn-helix domain 4 60 1.9E-10 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS00355 7d345e061785b06caa2eb9cc3819752a 92 SMART SM00530 6 62 6.8E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 NIDE_RS03295 82574df849f43df9c0699f21bf4c579c 370 Pfam PF11141 Protein of unknown function (DUF2914) 286 353 4.0E-18 T 23-04-2016 IPR022606 Protein of unknown function DUF2914 NIDE_RS10820 0a7590427fde84316ffd1db98e8f9b29 76 SUPERFAMILY SSF52091 2 75 3.73E-8 T 23-04-2016 IPR002645 STAS domain NIDE_RS10820 0a7590427fde84316ffd1db98e8f9b29 76 Gene3D G3DSA:3.30.750.24 2 75 5.9E-8 T 23-04-2016 IPR002645 STAS domain NIDE_RS10820 0a7590427fde84316ffd1db98e8f9b29 76 Pfam PF13466 STAS domain 6 75 4.4E-12 T 23-04-2016 IPR002645 STAS domain NIDE_RS20520 f70794444f9dbbc626d2e49c8d267697 125 Pfam PF07007 Protein of unknown function (DUF1311) 22 115 2.3E-13 T 23-04-2016 IPR009739 Protein of unknown function DUF1311 NIDE_RS20765 e9cdbecddb0dbbf488b31ec3e08c25ca 68 SUPERFAMILY SSF75005 2 67 1.57E-8 T 23-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain NIDE_RS13515 a4531c9394b925facc0ea799f761f474 857 Pfam PF09471 IgA Peptidase M64 788 838 1.2E-6 T 23-04-2016 IPR019026 Peptidase M64, IgA NIDE_RS17630 c323354bf011c1d78016617ccdd12321 250 SUPERFAMILY SSF48695 16 247 6.92E-20 T 23-04-2016 IPR011031 Multihaem cytochrome NIDE_RS17630 c323354bf011c1d78016617ccdd12321 250 Gene3D G3DSA:3.90.10.10 48 248 1.1E-16 T 23-04-2016 NIDE_RS16825 367e7df794da658deee6172a28c578f0 123 Pfam PF10861 Protein of Unknown function (DUF2784) 5 112 1.2E-36 T 23-04-2016 IPR021218 Protein of unknown function DUF2784 NIDE_RS18170 7e4b06be9a1fa140f8177d4a564af225 562 Pfam PF03354 Phage Terminase 71 538 2.0E-83 T 23-04-2016 IPR005021 Phage terminase NIDE_RS18170 7e4b06be9a1fa140f8177d4a564af225 562 PANTHER PTHR41287 1 552 2.8E-118 T 23-04-2016 NIDE_RS21175 f81d7b133798254fd557e7a326dfbb99 147 Pfam PF03724 META domain 34 132 1.8E-23 T 23-04-2016 IPR005184 Domain of unknown function DUF306, Meta/HslJ NIDE_RS21175 f81d7b133798254fd557e7a326dfbb99 147 PANTHER PTHR35535 12 143 1.2E-12 T 23-04-2016 NIDE_RS07130 7a38dc128a94846fd6ce12b36ccf6c1b 398 TIGRFAM TIGR01869 casC_Cse4: CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI 129 365 2.9E-65 T 23-04-2016 IPR010148 CRISPR-associated protein, CT1975 NIDE_RS07130 7a38dc128a94846fd6ce12b36ccf6c1b 398 Pfam PF09344 CT1975-like protein 5 369 3.8E-97 T 23-04-2016 IPR010148 CRISPR-associated protein, CT1975 NIDE_RS19425 f4dc640d4a234396cd01a395b19eb6d1 173 SUPERFAMILY SSF56770 39 166 1.44E-50 T 23-04-2016 NIDE_RS19425 f4dc640d4a234396cd01a395b19eb6d1 173 PANTHER PTHR11995 40 166 5.9E-57 T 23-04-2016 NIDE_RS19425 f4dc640d4a234396cd01a395b19eb6d1 173 PANTHER PTHR11995:SF3 40 166 5.9E-57 T 23-04-2016 NIDE_RS19425 f4dc640d4a234396cd01a395b19eb6d1 173 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 53 164 2.6E-28 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 NIDE_RS19425 f4dc640d4a234396cd01a395b19eb6d1 173 Gene3D G3DSA:3.40.50.700 42 166 1.7E-31 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 NIDE_RS13745 d7625110e6755fb508cd7e27cd657240 375 SUPERFAMILY SSF52540 125 258 5.67E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13745 d7625110e6755fb508cd7e27cd657240 375 SUPERFAMILY SSF52540 5 45 5.67E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS13745 d7625110e6755fb508cd7e27cd657240 375 Pfam PF13469 Sulfotransferase family 5 250 6.9E-14 T 23-04-2016 NIDE_RS13745 d7625110e6755fb508cd7e27cd657240 375 Gene3D G3DSA:3.40.50.300 138 254 1.5E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS03000 26a303aa2e79f4eb078a7ab3ca53e4ab 124 PANTHER PTHR30558 2 121 5.9E-21 T 23-04-2016 NIDE_RS03000 26a303aa2e79f4eb078a7ab3ca53e4ab 124 PANTHER PTHR30558:SF3 2 121 5.9E-21 T 23-04-2016 NIDE_RS03000 26a303aa2e79f4eb078a7ab3ca53e4ab 124 Pfam PF02472 Biopolymer transport protein ExbD/TolR 3 121 7.3E-20 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 NIDE_RS12190 2b62b734018461f3303719ebd256441f 244 Pfam PF11845 Protein of unknown function (DUF3365) 98 242 3.3E-26 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS04740 030d2e22d26e00e53a3f2dc0ca4a765d 482 Gene3D G3DSA:2.40.160.10 107 458 1.3E-19 T 23-04-2016 IPR023614 Porin domain NIDE_RS04740 030d2e22d26e00e53a3f2dc0ca4a765d 482 SUPERFAMILY SSF56935 108 481 4.17E-18 T 23-04-2016 NIDE_RS08095 515cb80a81f3e2508418dd5b3708e6e3 129 Pfam PF04892 VanZ like family 40 113 5.0E-11 T 23-04-2016 IPR006976 VanZ-like NIDE_RS20590 c7e0ba9b88307e64fbadebb4e7b47f8e 460 Pfam PF13699 Domain of unknown function (DUF4157) 80 157 4.7E-29 T 23-04-2016 IPR025295 Domain of unknown function DUF4157 NIDE_RS14945 bcc334b02376cae93c569348a3c3f573 277 Pfam PF09459 Ethylbenzene dehydrogenase 56 261 1.4E-28 T 23-04-2016 IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain GO:0020037 NIDE_RS17690 f54c0180bb077c479132dde7c55c5611 119 SUPERFAMILY SSF75169 1 119 1.24E-22 T 23-04-2016 IPR027396 DsrEFH-like NIDE_RS17690 f54c0180bb077c479132dde7c55c5611 119 Gene3D G3DSA:3.40.1260.10 3 119 6.6E-24 T 23-04-2016 IPR027396 DsrEFH-like NIDE_RS17690 f54c0180bb077c479132dde7c55c5611 119 Pfam PF02635 DsrE/DsrF-like family 11 119 6.2E-18 T 23-04-2016 IPR003787 Sulphur relay, DsrE/F-like protein NIDE_RS03175 d4896b80e5c4779dac0f53efcd236aa4 139 Pfam PF12953 Domain of unknown function (DUF3842) 3 129 6.7E-39 T 23-04-2016 IPR024208 Protein of unknown function DUF3842 NIDE_RS17130 efaffddc2329676f287a3dd4c4d86091 329 Gene3D G3DSA:1.25.40.10 186 290 4.0E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS17130 efaffddc2329676f287a3dd4c4d86091 329 SMART SM00028 260 293 13.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17130 efaffddc2329676f287a3dd4c4d86091 329 SMART SM00028 184 217 2.2 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17130 efaffddc2329676f287a3dd4c4d86091 329 SMART SM00028 226 259 54.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 NIDE_RS17130 efaffddc2329676f287a3dd4c4d86091 329 SUPERFAMILY SSF48452 187 291 9.87E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS07350 b9001031d8854d38af47fe63bb66ad94 91 Pfam PF04368 Protein of unknown function (DUF507) 3 88 2.9E-20 T 23-04-2016 IPR007463 Protein of unknown function DUF507 NIDE_RS02320 bcbdca48f40b9bddb6ac78921633de6d 119 PANTHER PTHR34801 4 117 5.7E-35 T 23-04-2016 NIDE_RS02320 bcbdca48f40b9bddb6ac78921633de6d 119 PIRSF PIRSF026426 2 118 1.0E-40 T 23-04-2016 IPR010865 Protein of unknown function DUF1499 NIDE_RS02320 bcbdca48f40b9bddb6ac78921633de6d 119 Pfam PF07386 Protein of unknown function (DUF1499) 5 112 1.0E-28 T 23-04-2016 IPR010865 Protein of unknown function DUF1499 NIDE_RS18675 aa90ba093364c7fafb93802b695733f5 134 SUPERFAMILY SSF54523 1 120 4.63E-13 T 23-04-2016 NIDE_RS18675 aa90ba093364c7fafb93802b695733f5 134 Gene3D G3DSA:3.30.700.10 1 127 6.7E-8 T 23-04-2016 NIDE_RS13075 5b34c18368bc1bea24af4b74534eb52e 433 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 56 214 2.5E-8 T 23-04-2016 NIDE_RS16025 7aed2d3851d8c30932002a4d3d695ad7 590 Pfam PF09972 Predicted membrane protein (DUF2207) 46 521 4.2E-87 T 23-04-2016 IPR018702 Protein of unknown function DUF2207, membrane NIDE_RS15685 3a29f94e27c4552493a1fa5eceeb2b29 278 Pfam PF05711 Macrocin-O-methyltransferase (TylF) 104 264 9.0E-15 T 23-04-2016 IPR008884 Macrocin-O-methyltransferase NIDE_RS00230 0cca588ead6ab270432e9b69b9a27cb1 227 SUPERFAMILY SSF53335 118 173 2.92E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00230 0cca588ead6ab270432e9b69b9a27cb1 227 SUPERFAMILY SSF53335 16 71 2.92E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00230 0cca588ead6ab270432e9b69b9a27cb1 227 Gene3D G3DSA:3.40.50.150 27 59 7.6E-6 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS00230 0cca588ead6ab270432e9b69b9a27cb1 227 Gene3D G3DSA:3.40.50.150 102 173 7.6E-6 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIDE_RS11400 70ff75a1803d72e8cdffc93be1c66959 375 Gene3D G3DSA:2.40.50.100 75 117 1.6E-4 T 23-04-2016 NIDE_RS00810 203fe83c7c206201b13e17b362007f99 673 SUPERFAMILY SSF52540 30 180 9.44E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS00810 203fe83c7c206201b13e17b362007f99 673 Gene3D G3DSA:3.40.50.300 27 179 1.1E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIDE_RS07790 39563f4eebf2dbb4c8c6261e3a711c38 249 Gene3D G3DSA:2.50.20.10 32 186 9.5E-5 T 23-04-2016 NIDE_RS11615 4e9b3d7742083d1ea46f2cef10c1eb15 115 SUPERFAMILY SSF55008 24 88 3.51E-5 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 NIDE_RS00520 7393b374f3cdc31fd0f9eeb63026e33d 250 PIRSF PIRSF028589 1 250 7.0E-72 T 23-04-2016 IPR016893 Protein of unknown function UCP028589 NIDE_RS17375 cdf84a7b3cf5e6b4459bc1597b4fe66f 352 SUPERFAMILY SSF88713 31 160 8.9E-9 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 NIDE_RS07610 d2abb385d746ecfb12e1bfeab111241c 70 Gene3D G3DSA:1.10.443.10 1 55 1.4E-14 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS07610 d2abb385d746ecfb12e1bfeab111241c 70 Pfam PF00589 Phage integrase family 2 38 6.5E-9 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 NIDE_RS07610 d2abb385d746ecfb12e1bfeab111241c 70 SUPERFAMILY SSF56349 1 54 1.18E-14 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 NIDE_RS12840 f7361eae72b438c75be01b7f7d51292d 323 SUPERFAMILY SSF53474 36 323 5.52E-28 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS12840 f7361eae72b438c75be01b7f7d51292d 323 Gene3D G3DSA:3.40.50.1820 248 322 3.8E-26 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS12840 f7361eae72b438c75be01b7f7d51292d 323 Gene3D G3DSA:3.40.50.1820 55 209 3.8E-26 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold NIDE_RS15085 2295c5a097375bbdbbb10a26493ac1cd 621 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 69 327 4.0E-16 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 NIDE_RS03090 5e516763275a72275d4358c1a163aa1c 183 Pfam PF16694 Cytochrome P460 40 170 4.1E-25 T 23-04-2016 IPR032033 Cytochrome P460 NIDE_RS00465 511f72b24f2665c468297062f0d43482 652 Pfam PF05876 Phage terminase large subunit (GpA) 36 600 1.7E-203 T 23-04-2016 IPR008866 Bacteriophage lambda, GpA NIDE_RS11600 3e06b26cb594adbd576a33ffa4693d17 252 Pfam PF11845 Protein of unknown function (DUF3365) 14 247 3.0E-27 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS00450 1943ab7daa8acac36c1c95383fd63bd3 173 Pfam PF11994 Protein of unknown function (DUF3489) 106 172 2.4E-32 T 23-04-2016 IPR021880 Protein of unknown function DUF3489 NIDE_RS11590 bb6859220c2f78ab876e5a039e8787e9 300 PANTHER PTHR32479:SF12 3 291 1.2E-65 T 23-04-2016 NIDE_RS11590 bb6859220c2f78ab876e5a039e8787e9 300 PANTHER PTHR32479 3 291 1.2E-65 T 23-04-2016 NIDE_RS11590 bb6859220c2f78ab876e5a039e8787e9 300 Pfam PF02754 Cysteine-rich domain 6 86 9.4E-16 T 23-04-2016 IPR004017 Cysteine-rich domain NIDE_RS11590 bb6859220c2f78ab876e5a039e8787e9 300 Pfam PF02754 Cysteine-rich domain 150 239 4.7E-15 T 23-04-2016 IPR004017 Cysteine-rich domain NIDE_RS00105 27cdbb4b2c278705dc2046085e256a89 292 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 25 9.1E-4 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal NIDE_RS04080 594e24e4c0466c218f07925bea25dc5a 200 Pfam PF02397 Bacterial sugar transferase 3 195 4.3E-52 T 23-04-2016 IPR003362 Bacterial sugar transferase NIDE_RS04080 594e24e4c0466c218f07925bea25dc5a 200 PANTHER PTHR30576 1 196 2.2E-72 T 23-04-2016 NIDE_RS15100 c1a4a2b2363c604dfdb35411d1e1fbee 238 Pfam PF04238 Protein of unknown function (DUF420) 21 123 1.7E-10 T 23-04-2016 IPR007352 Protein of unknown function DUF420 NIDE_RS12685 e20baa611c31e5ee6b20e1c2760b2aa1 473 Pfam PF14356 Domain of unknown function (DUF4403) 43 463 1.0E-49 T 23-04-2016 IPR025515 Protein of unknown function DUF4403 NIDE_RS02990 f138f198d6223d33757ce72233610190 434 PANTHER PTHR34219 10 407 2.9E-56 T 23-04-2016 NIDE_RS02990 f138f198d6223d33757ce72233610190 434 Pfam PF03929 PepSY-associated TM region 22 396 3.2E-56 T 23-04-2016 IPR005625 PepSY-associated TM protein NIDE_RS10040 2432417c7abd96fe1948576cc1dd60fc 356 Pfam PF04015 Domain of unknown function (DUF362) 92 289 5.1E-40 T 23-04-2016 IPR007160 Domain of unknown function DUF362 NIDE_RS06250 5abfe4e6dcfea6cf5de8616740a72e9c 184 Pfam PF05137 Fimbrial assembly protein (PilN) 113 180 1.0E-12 T 23-04-2016 IPR007813 Fimbrial assembly PilN NIDE_RS17825 d5babb046df9ec115c77d3073528fb52 141 Pfam PF09990 Predicted membrane protein (DUF2231) 34 137 3.2E-5 T 23-04-2016 IPR019251 Domain of unknown function DUF2231, transmembrane NIDE_RS15710 cbaad382735089dbfb72dcd51a6c6868 254 Pfam PF12679 ABC-2 family transporter protein 54 183 2.2E-10 T 23-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 NIDE_RS09655 de0c952359fc68fa4e7d71e37a2772ca 359 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 26 72 4.1E-10 T 23-04-2016 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal NIDE_RS09655 de0c952359fc68fa4e7d71e37a2772ca 359 Pfam PF09977 Putative Tad-like Flp pilus-assembly 97 174 9.3E-5 T 23-04-2016 IPR018705 Domain of unknown function DUF2134, membrane NIDE_RS09145 01575e974b715b3b78bb6f95b17ad9bd 76 SUPERFAMILY SSF143100 7 64 4.71E-12 T 23-04-2016 NIDE_RS18975 f6cb2f042b63d908561f7e8821dd1ffa 143 Pfam PF09656 Putative transmembrane protein (PGPGW) 72 103 2.4E-6 T 23-04-2016 IPR019099 Uncharacterised protein family PGPGW, transmembrane NIDE_RS17140 b86332d7b110adc182bfc27467638da0 338 Pfam PF01699 Sodium/calcium exchanger protein 4 142 3.9E-12 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 NIDE_RS17140 b86332d7b110adc182bfc27467638da0 338 Pfam PF01699 Sodium/calcium exchanger protein 190 334 1.7E-13 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 NIDE_RS07430 a5252d89e5dcc40add8d5a06d50fe117 485 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 217 473 6.7E-9 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS07430 a5252d89e5dcc40add8d5a06d50fe117 485 Gene3D G3DSA:3.40.50.1110 382 483 1.4E-11 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS07430 a5252d89e5dcc40add8d5a06d50fe117 485 Gene3D G3DSA:3.40.50.1110 214 286 1.4E-11 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS07430 a5252d89e5dcc40add8d5a06d50fe117 485 SUPERFAMILY SSF52266 214 291 3.34E-17 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS07430 a5252d89e5dcc40add8d5a06d50fe117 485 SUPERFAMILY SSF52266 385 484 3.34E-17 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain NIDE_RS01805 df2842afeec21a5a20b43fa6dedd699c 223 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 6 167 5.1E-33 T 23-04-2016 IPR025847 MEDS domain NIDE_RS04150 b008d8141f463ec980462a1fefc67eb3 626 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 60 301 2.5E-19 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 NIDE_RS10385 58d9a5425fe0600d3471bbca8b36ca0e 113 SUPERFAMILY SSF141371 8 100 6.67E-7 T 23-04-2016 NIDE_RS12085 647e48cc2e6dfc88bfbec4431389821a 92 Gene3D G3DSA:3.10.20.30 1 76 8.3E-6 T 23-04-2016 IPR012675 Beta-grasp domain NIDE_RS08940 2a97ad2a06e86831482741dc83870596 253 Pfam PF14326 Domain of unknown function (DUF4384) 109 187 3.8E-16 T 23-04-2016 IPR025493 Domain of unknown function DUF4384 NIDE_RS03410 b081ecb1774ca4ca05ab98d4e896eb91 550 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 111 245 4.7E-11 T 23-04-2016 NIDE_RS20460 696ff09da95ff1a38b048d24ba92d926 124 Pfam PF13682 Chemoreceptor zinc-binding domain 15 80 5.4E-12 T 23-04-2016 IPR025991 Chemoreceptor zinc-binding domain UniPathway: UPA00599 NIDE_RS21190 c2b5bb89db0790e483f8c2b89e1b49ef 220 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 118 191 7.9E-7 T 23-04-2016 IPR007621 TPM domain NIDE_RS18050 c350b6c0d72f5d5c6402bbf2a5c6aaf5 279 SUPERFAMILY SSF64182 9 262 1.06E-18 T 23-04-2016 NIDE_RS10925 e22be9d76d3aa0be39a1a64d81028fbf 88 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 31 83 1.0E-19 T 23-04-2016 IPR025528 BrnA antitoxin of type II toxin-antitoxin system NIDE_RS01450 9b9016ab6f44f28e8d9a97e7e9a0b35c 213 SUPERFAMILY SSF48452 99 189 9.97E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS01450 9b9016ab6f44f28e8d9a97e7e9a0b35c 213 Gene3D G3DSA:1.25.40.10 54 192 2.3E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 NIDE_RS18035 dd8f03297f8a57e5ae6c285883d29c96 502 Pfam PF05114 Protein of unknown function (DUF692) 118 320 8.0E-13 T 23-04-2016 IPR007801 Uncharacterised protein family UPF0276 NIDE_RS18035 dd8f03297f8a57e5ae6c285883d29c96 502 Gene3D G3DSA:3.20.20.150 283 327 4.5E-16 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain NIDE_RS18035 dd8f03297f8a57e5ae6c285883d29c96 502 Gene3D G3DSA:3.20.20.150 76 250 4.5E-16 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain NIDE_RS12770 521761c4809bc4d3a2767bdc15434181 91 Gene3D G3DSA:1.10.260.40 47 82 3.6E-4 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 NIDE_RS07585 127f66e6814ce3fbf6b2fff8baeb6c10 147 SUPERFAMILY SSF88723 4 142 4.51E-7 T 23-04-2016 IPR029060 PIN domain-like NIDE_RS04955 2db7c1c73df128667e653994f82bf9e2 321 Pfam PF11185 Protein of unknown function (DUF2971) 134 228 8.6E-9 T 23-04-2016 IPR021352 Protein of unknown function DUF2971 NIDE_RS15060 32cf4afa4d6f2932da5d6d0d007f7558 639 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 90 338 3.4E-20 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 NIDE_RS12435 6b084157d362a62dc3feb6454cb37715 96 Pfam PF01527 Transposase 6 75 2.7E-11 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 NIDE_RS12435 6b084157d362a62dc3feb6454cb37715 96 Gene3D G3DSA:1.10.10.60 25 87 3.7E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS12435 6b084157d362a62dc3feb6454cb37715 96 SUPERFAMILY SSF46689 7 77 3.58E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 NIDE_RS02170 4dc2d36c760b640687560e90747e8ab8 353 Pfam PF15887 Putative zinc-binding metallo-peptidase 117 187 1.4E-7 T 23-04-2016 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase NIDE_RS19385 1ff7853171c647a8cdb837e4d342f00e 141 Pfam PF08308 PEGA domain 39 85 3.8E-9 T 23-04-2016 IPR013229 PEGA NIDE_RS04660 c3a85d4e22bf89eec8c0e0d5b00656bb 181 Pfam PF06271 RDD family 75 168 2.3E-5 T 23-04-2016 IPR010432 RDD NIDE_RS08975 047e39dc12ef7ea44888bd0413d040a1 1075 Pfam PF04773 FecR protein 73 148 3.2E-5 T 23-04-2016 IPR006860 FecR protein NIDE_RS18540 024ec4a24fd3d9d351cdfc8011ac7b27 265 Pfam PF03692 Putative zinc- or iron-chelating domain 65 175 1.7E-8 T 23-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein NIDE_RS09795 7218b8d3cd69f8bb5fa7031965b2197a 120 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 14 108 8.1E-23 T 23-04-2016 IPR009241 Toxin HigB-like NIDE_RS02650 934f3db5119c116d8e20104dc40a378c 142 Pfam PF11220 Protein of unknown function (DUF3015) 40 133 2.5E-12 T 23-04-2016 IPR021383 Protein of unknown function DUF3015 NIDE_RS20070 865391e3b2ed5508b32bff3b5ae10bf7 168 Pfam PF05258 Protein of unknown function (DUF721) 10 95 1.3E-22 T 23-04-2016 IPR007922 Protein of unknown function DUF721/UPF0232 NIDE_RS20070 865391e3b2ed5508b32bff3b5ae10bf7 168 PANTHER PTHR36456 10 151 1.2E-22 T 23-04-2016 NIDE_RS21100 56678be76a43b7fc2b04059072256e35 209 Pfam PF03692 Putative zinc- or iron-chelating domain 34 138 4.7E-6 T 23-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein NIDE_RS11060 92da4477c529e1d670b8316a7361bf39 212 Pfam PF05235 CHAD domain 5 148 3.0E-7 T 23-04-2016 IPR007899 CHAD domain NIDE_RS12390 b742f2312e048a22440db71b40162ec2 397 Pfam PF04932 O-Antigen ligase 183 320 3.0E-9 T 23-04-2016 IPR007016 O-antigen ligase-related NIDE_RS17740 46b394d856fd876bed947978ae6beb8e 72 Pfam PF11127 Protein of unknown function (DUF2892) 1 65 8.0E-17 T 23-04-2016 IPR021309 Protein of unknown function DUF2892 NIDE_RS20690 ed43309b38dbd53195fe98259099cebb 301 Pfam PF01844 HNH endonuclease 229 283 8.8E-10 T 23-04-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 NIDE_RS20690 ed43309b38dbd53195fe98259099cebb 301 SMART SM00507 216 279 0.0045 T 23-04-2016 IPR003615 HNH nuclease NIDE_RS17855 5e5cee113e52ff56ac9253c185b2aade 62 Pfam PF11127 Protein of unknown function (DUF2892) 3 56 5.5E-12 T 23-04-2016 IPR021309 Protein of unknown function DUF2892 NIDE_RS07575 0451d79e9d45ffe1d30e8bba967abc55 373 Pfam PF02169 LPP20 lipoprotein 32 139 2.5E-12 T 23-04-2016 IPR024952 Lipoprotein LPP20-like NIDE_RS19320 09189bfc525c541528553aa843bef934 208 Pfam PF04390 Lipopolysaccharide-assembly 9 174 1.5E-9 T 23-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 NIDE_RS09470 66f8a27adadb086c5e539e4260bb8cc8 101 SUPERFAMILY SSF54913 1 75 2.11E-5 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta NIDE_RS17720 e4fe55c644fa9a24c1e8cfd3590581ea 194 Pfam PF11845 Protein of unknown function (DUF3365) 62 191 3.5E-17 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 NIDE_RS09210 bb2cfc8285ace0e462f1a258a36600e2 211 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 2 113 4.4E-12 T 23-04-2016 IPR008517 Protein of unknown function DUF799 NIDE_RS11195 d8a0665303a37469230e8eebf00e5c90 419 Pfam PF07399 Putative Na+/H+ antiporter 6 419 2.6E-189 T 23-04-2016 IPR009978 Putative Na+/H+ antiporter NIDE_RS09660 7e280ff75d009e9a0bc59ebd4878a75f 140 Pfam PF07811 TadE-like protein 16 58 1.9E-17 T 23-04-2016 IPR012495 TadE-like NIDE_RS02210 d87967a66d059e0f7000706e54164889 214 Pfam PF10947 Protein of unknown function (DUF2628) 48 140 6.7E-8 T 23-04-2016 IPR024399 Protein of unknown function DUF2628 NIDE_RS09105 63849894c9aed82cede6a7104ae54d71 374 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 20 319 5.3E-94 T 23-04-2016 IPR018683 Domain of unknown function DUF2169 NIDE_RS19490 00a8d45225878275258568b1b8e1a9a7 62 SUPERFAMILY SSF57863 3 39 3.92E-5 T 23-04-2016 NIDE_RS00375 c541e5e9ad9bdd114dbdaa388d63dd96 87 SUPERFAMILY SSF46955 27 74 1.89E-7 T 23-04-2016 IPR009061 Putative DNA-binding domain NIDE_RS20685 63f5f11b1398495e5d350b3ac315b9cd 416 Gene3D G3DSA:1.10.150.20 347 383 1.7E-5 T 23-04-2016 NIDE_RS00335 09dbffde1da5a8fa44ad9e28f09db04a 123 SUPERFAMILY SSF109709 36 96 6.67E-7 T 23-04-2016 NIDE_RS00710 e0429016fa9f3e9e17ecbadef1f6b723 237 Pfam PF14371 Domain of unknown function (DUF4412) 26 212 1.4E-49 T 23-04-2016 IPR025524 Domain of unknown function DUF4412 NIDE_RS11520 7723d5ede003df4e28813066a3b774d8 78 SUPERFAMILY SSF47598 1 38 4.45E-5 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 NIDE_RS12270 ace6aa7f662129c038a342e11a78bf6c 85 Pfam PF04193 PQ loop repeat 6 61 9.2E-11 T 23-04-2016 IPR006603 PQ-loop repeat