locus-tag class description DN609_RS00010 PF00308 Bacterial dnaA protein DN609_RS00010 PF08299 Bacterial dnaA protein helix-turn-helix DN609_RS00010 PF11638 DnaA N-terminal domain DN609_RS00015 PF02768 DNA polymerase III beta subunit, C-terminal domain DN609_RS00015 PF00712 DNA polymerase III beta subunit, N-terminal domain DN609_RS00015 PF02767 DNA polymerase III beta subunit, central domain DN609_RS00020 PF02463 RecF/RecN/SMC N terminal domain DN609_RS00030 PF01751 Toprim domain DN609_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DN609_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus DN609_RS00030 PF00204 DNA gyrase B DN609_RS00035 PF00521 DNA gyrase/topoisomerase IV, subunit A DN609_RS00035 PF03989 DNA gyrase C-terminal domain, beta-propeller DN609_RS00075 PF03144 Elongation factor Tu domain 2 DN609_RS00075 PF00009 Elongation factor Tu GTP binding domain DN609_RS00075 PF00679 Elongation factor G C-terminus DN609_RS00080 PF03458 UPF0126 domain DN609_RS00100 PF01250 Ribosomal protein S6 DN609_RS00105 PF00436 Single-strand binding protein family DN609_RS00110 PF01084 Ribosomal protein S18 DN609_RS00120 PF03948 Ribosomal protein L9, C-terminal domain DN609_RS00120 PF01281 Ribosomal protein L9, N-terminal domain DN609_RS00130 PF00772 DnaB-like helicase N terminal domain DN609_RS00130 PF03796 DnaB-like helicase C terminal domain DN609_RS00135 PF00155 Aminotransferase class I and II DN609_RS00140 PF00709 Adenylosuccinate synthetase DN609_RS00150 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DN609_RS00150 PF02843 Phosphoribosylglycinamide synthetase, C domain DN609_RS00150 PF02844 Phosphoribosylglycinamide synthetase, N domain DN609_RS00155 PF00293 NUDIX domain DN609_RS00180 PF02073 Thermophilic metalloprotease (M29) DN609_RS00190 PF01791 DeoC/LacD family aldolase DN609_RS00195 PF00764 Arginosuccinate synthase DN609_RS00200 PF00206 Lyase DN609_RS00200 PF14698 Argininosuccinate lyase C-terminal DN609_RS00205 PF10397 Adenylosuccinate lyase C-terminus DN609_RS00205 PF00206 Lyase DN609_RS00220 PF00486 Transcriptional regulatory protein, C terminal DN609_RS00220 PF00072 Response regulator receiver domain DN609_RS00225 PF00672 HAMP domain DN609_RS00225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DN609_RS00225 PF00512 His Kinase A (phospho-acceptor) domain DN609_RS00230 PF01259 SAICAR synthetase DN609_RS00250 PF00069 Protein kinase domain DN609_RS00250 PF03793 PASTA domain DN609_RS00255 PF01098 Cell cycle protein DN609_RS00270 PF12401 Protein of unknown function (DUF2662) DN609_RS00270 PF00498 FHA domain DN609_RS00275 PF03793 PASTA domain DN609_RS00275 PF00069 Protein kinase domain DN609_RS00290 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DN609_RS00290 PF02403 Seryl-tRNA synthetase N-terminal domain DN609_RS00295 PF00664 ABC transporter transmembrane region DN609_RS00295 PF00005 ABC transporter DN609_RS00310 PF00731 AIR carboxylase DN609_RS00315 PF04203 Sortase domain DN609_RS00320 PF00156 Phosphoribosyl transferase domain DN609_RS00325 PF02769 AIR synthase related protein, C-terminal domain DN609_RS00325 PF00586 AIR synthase related protein, N-terminal domain DN609_RS00330 PF00551 Formyl transferase DN609_RS00335 PF07702 UTRA domain DN609_RS00335 PF00392 Bacterial regulatory proteins, gntR family DN609_RS00350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DN609_RS00355 PF03611 PTS system sugar-specific permease component DN609_RS00365 PF01116 Fructose-bisphosphate aldolase class-II DN609_RS00370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DN609_RS00375 PF00455 DeoR C terminal sensor domain DN609_RS00375 PF08220 DeoR-like helix-turn-helix domain DN609_RS00395 PF03611 PTS system sugar-specific permease component DN609_RS00400 PF00596 Class II Aldolase and Adducin N-terminal domain DN609_RS00420 PF05958 tRNA (Uracil-5-)-methyltransferase DN609_RS00420 PF01938 TRAM domain DN609_RS00430 PF03144 Elongation factor Tu domain 2 DN609_RS00430 PF00679 Elongation factor G C-terminus DN609_RS00430 PF03764 Elongation factor G, domain IV DN609_RS00430 PF00009 Elongation factor Tu GTP binding domain DN609_RS00430 PF14492 Elongation Factor G, domain II DN609_RS00440 PF01595 Cyclin M transmembrane N-terminal domain DN609_RS00440 PF00571 CBS domain DN609_RS00440 PF03471 Transporter associated domain DN609_RS00465 PF00571 CBS domain DN609_RS00465 PF03448 MgtE intracellular N domain DN609_RS00465 PF01769 Divalent cation transporter DN609_RS00470 PF01915 Glycosyl hydrolase family 3 C-terminal domain DN609_RS00470 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS00470 PF14310 Fibronectin type III-like domain DN609_RS00475 PF14437 MafB19-like deaminase DN609_RS00485 PF04011 LemA family DN609_RS00490 PF17785 PUA-like domain DN609_RS00490 PF10672 S-adenosylmethionine-dependent methyltransferase DN609_RS00495 PF00005 ABC transporter DN609_RS00495 PF17912 MalK OB fold domain DN609_RS00495 PF03459 TOBE domain DN609_RS00500 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS00505 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS00520 PF00270 DEAD/DEAH box helicase DN609_RS00520 PF00271 Helicase conserved C-terminal domain DN609_RS00525 PF04204 Homoserine O-succinyltransferase DN609_RS00535 PF03793 PASTA domain DN609_RS00535 PF00069 Protein kinase domain DN609_RS00555 PF01381 Helix-turn-helix DN609_RS00565 PF12850 Calcineurin-like phosphoesterase superfamily domain DN609_RS00570 PF00012 Hsp70 protein DN609_RS00575 PF01025 GrpE DN609_RS00580 PF00226 DnaJ domain DN609_RS00580 PF01556 DnaJ C terminal domain DN609_RS00580 PF00684 DnaJ central domain DN609_RS00585 PF13411 MerR HTH family regulatory protein DN609_RS00595 PF17871 AAA lid domain DN609_RS00595 PF02861 Clp amino terminal domain, pathogenicity island component DN609_RS00595 PF10431 C-terminal, D2-small domain, of ClpB protein DN609_RS00595 PF00004 ATPase family associated with various cellular activities (AAA) DN609_RS00595 PF07724 AAA domain (Cdc48 subfamily) DN609_RS00615 PF00011 Hsp20/alpha crystallin family DN609_RS00620 PF00294 pfkB family carbohydrate kinase DN609_RS00625 PF01116 Fructose-bisphosphate aldolase class-II DN609_RS00630 PF08220 DeoR-like helix-turn-helix domain DN609_RS00630 PF00455 DeoR C terminal sensor domain DN609_RS00645 PF03830 PTS system sorbose subfamily IIB component DN609_RS00650 PF03609 PTS system sorbose-specific iic component DN609_RS00655 PF03613 PTS system mannose/fructose/sorbose family IID component DN609_RS00660 PF07702 UTRA domain DN609_RS00660 PF00392 Bacterial regulatory proteins, gntR family DN609_RS00665 PF01380 SIS domain DN609_RS00670 PF01979 Amidohydrolase family DN609_RS00680 PF00753 Metallo-beta-lactamase superfamily DN609_RS00685 PF11734 TilS substrate C-terminal domain DN609_RS00685 PF01171 PP-loop family DN609_RS00690 PF01171 PP-loop family DN609_RS00690 PF11734 TilS substrate C-terminal domain DN609_RS00690 PF00156 Phosphoribosyl transferase domain DN609_RS00695 PF17862 AAA+ lid domain DN609_RS00695 PF01434 Peptidase family M41 DN609_RS00695 PF06480 FtsH Extracellular DN609_RS00695 PF00004 ATPase family associated with various cellular activities (AAA) DN609_RS00700 PF00155 Aminotransferase class I and II DN609_RS00720 PF02811 PHP domain DN609_RS00725 PF03372 Endonuclease/Exonuclease/phosphatase family DN609_RS00735 PF02146 Sir2 family DN609_RS00740 PF00809 Pterin binding enzyme DN609_RS00750 PF03309 Type III pantothenate kinase DN609_RS00755 PF01197 Ribosomal protein L31 DN609_RS00765 PF03462 PCRF domain DN609_RS00765 PF00472 RF-1 domain DN609_RS00770 PF05175 Methyltransferase small domain DN609_RS00770 PF17827 PrmC N-terminal domain DN609_RS00775 PF02502 Ribose/Galactose Isomerase DN609_RS00790 PF00119 ATP synthase A chain DN609_RS00800 PF00430 ATP synthase B/B' CF(0) DN609_RS00805 PF00213 ATP synthase delta (OSCP) subunit DN609_RS00810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DN609_RS00810 PF02874 ATP synthase alpha/beta family, beta-barrel domain DN609_RS00810 PF00306 ATP synthase alpha/beta chain, C terminal domain DN609_RS00815 PF00231 ATP synthase DN609_RS00820 PF02874 ATP synthase alpha/beta family, beta-barrel domain DN609_RS00820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DN609_RS00825 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DN609_RS00825 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DN609_RS00830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DN609_RS00835 PF03816 Cell envelope-related transcriptional attenuator domain DN609_RS00845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DN609_RS00845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DN609_RS00845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DN609_RS00845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DN609_RS00880 PF13538 UvrD-like helicase C-terminal domain DN609_RS00890 PF00535 Glycosyl transferase family 2 DN609_RS00900 PF08148 DSHCT (NUC185) domain DN609_RS00900 PF00271 Helicase conserved C-terminal domain DN609_RS00900 PF00270 DEAD/DEAH box helicase DN609_RS00905 PF01380 SIS domain DN609_RS00905 PF01418 Helix-turn-helix domain, rpiR family DN609_RS00915 PF03830 PTS system sorbose subfamily IIB component DN609_RS00925 PF03613 PTS system mannose/fructose/sorbose family IID component DN609_RS00930 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DN609_RS00935 PF01380 SIS domain DN609_RS00940 PF02733 Dak1 domain DN609_RS00945 PF02734 DAK2 domain DN609_RS00955 PF01915 Glycosyl hydrolase family 3 C-terminal domain DN609_RS00955 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS00955 PF14310 Fibronectin type III-like domain DN609_RS00965 PF00156 Phosphoribosyl transferase domain DN609_RS00970 PF01336 OB-fold nucleic acid binding domain DN609_RS00970 PF00152 tRNA synthetases class II (D, K and N) DN609_RS00975 PF05116 Sucrose-6F-phosphate phosphohydrolase DN609_RS00980 PF00271 Helicase conserved C-terminal domain DN609_RS00980 PF08494 DEAD/H associated DN609_RS00980 PF00270 DEAD/DEAH box helicase DN609_RS00985 PF13520 Amino acid permease DN609_RS01015 PF00183 Hsp90 protein DN609_RS01025 PF00206 Lyase DN609_RS01025 PF10415 Fumarase C C-terminus DN609_RS01030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DN609_RS01035 PF11756 Nitrous oxide-stimulated promoter DN609_RS01040 PF01177 Asp/Glu/Hydantoin racemase DN609_RS01045 PF02645 Uncharacterised protein, DegV family COG1307 DN609_RS01050 PF09861 Lactate racemase N-terminal domain DN609_RS01055 PF00230 Major intrinsic protein DN609_RS01060 PF13276 HTH-like domain DN609_RS01060 PF00665 Integrase core domain DN609_RS01060 PF13333 Integrase core domain DN609_RS01075 PF01969 Protein of unknown function DUF111 DN609_RS01080 PF00731 AIR carboxylase DN609_RS01090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DN609_RS01095 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS01100 PF12911 N-terminal TM domain of oligopeptide transport permease C DN609_RS01100 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS01105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DN609_RS01105 PF00005 ABC transporter DN609_RS01110 PF00005 ABC transporter DN609_RS01130 PF09297 NADH pyrophosphatase zinc ribbon domain DN609_RS01130 PF00293 NUDIX domain DN609_RS01140 PF04542 Sigma-70 region 2 DN609_RS01140 PF08281 Sigma-70, region 4 DN609_RS01150 PF00682 HMGL-like DN609_RS01150 PF08502 LeuA allosteric (dimerisation) domain DN609_RS01155 PF00330 Aconitase family (aconitate hydratase) DN609_RS01160 PF00694 Aconitase C-terminal domain DN609_RS01165 PF00180 Isocitrate/isopropylmalate dehydrogenase DN609_RS01175 PF00690 Cation transporter/ATPase, N-terminus DN609_RS01175 PF00689 Cation transporting ATPase, C-terminus DN609_RS01190 PF00486 Transcriptional regulatory protein, C terminal DN609_RS01190 PF00072 Response regulator receiver domain DN609_RS01195 PF00512 His Kinase A (phospho-acceptor) domain DN609_RS01195 PF13493 Domain of unknown function (DUF4118) DN609_RS01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DN609_RS01195 PF02702 Osmosensitive K+ channel His kinase sensor domain DN609_RS01205 PF03477 ATP cone domain DN609_RS01205 PF13597 Anaerobic ribonucleoside-triphosphate reductase DN609_RS01210 PF00155 Aminotransferase class I and II DN609_RS01225 PF00271 Helicase conserved C-terminal domain DN609_RS01225 PF09382 RQC domain DN609_RS01225 PF00270 DEAD/DEAH box helicase DN609_RS01225 PF00570 HRDC domain DN609_RS01225 PF16124 RecQ zinc-binding DN609_RS01230 PF02361 Cobalt transport protein DN609_RS01235 PF00005 ABC transporter DN609_RS01260 PF02645 Uncharacterised protein, DegV family COG1307 DN609_RS01265 PF07690 Major Facilitator Superfamily DN609_RS01270 PF02687 FtsX-like permease family DN609_RS01270 PF12704 MacB-like periplasmic core domain DN609_RS01270 PF00005 ABC transporter DN609_RS01285 PF01808 AICARFT/IMPCHase bienzyme DN609_RS01285 PF02142 MGS-like domain DN609_RS01290 PF02659 Putative manganese efflux pump DN609_RS01295 PF00497 Bacterial extracellular solute-binding proteins, family 3 DN609_RS01300 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS01305 PF00005 ABC transporter DN609_RS01310 PF01926 50S ribosome-binding GTPase DN609_RS01320 PF04397 LytTr DNA-binding domain DN609_RS01320 PF00072 Response regulator receiver domain DN609_RS01330 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS01335 PF14310 Fibronectin type III-like domain DN609_RS01335 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS01335 PF01915 Glycosyl hydrolase family 3 C-terminal domain DN609_RS01345 PF03932 CutC family DN609_RS01355 PF02390 Putative methyltransferase DN609_RS01365 PF01368 DHH family DN609_RS01365 PF02833 DHHA2 domain DN609_RS01365 PF07085 DRTGG domain DN609_RS01365 PF00571 CBS domain DN609_RS01370 PF02779 Transketolase, pyrimidine binding domain DN609_RS01370 PF02780 Transketolase, C-terminal domain DN609_RS01370 PF00456 Transketolase, thiamine diphosphate binding domain DN609_RS01375 PF02779 Transketolase, pyrimidine binding domain DN609_RS01375 PF02780 Transketolase, C-terminal domain DN609_RS01380 PF00005 ABC transporter DN609_RS01380 PF12848 ABC transporter DN609_RS01385 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DN609_RS01385 PF00056 lactate/malate dehydrogenase, NAD binding domain DN609_RS01390 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DN609_RS01390 PF00056 lactate/malate dehydrogenase, NAD binding domain DN609_RS01395 PF13732 Domain of unknown function (DUF4162) DN609_RS01395 PF00005 ABC transporter DN609_RS01405 PF17763 Glutaminase/Asparaginase C-terminal domain DN609_RS01405 PF00710 Asparaginase, N-terminal DN609_RS01410 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS01430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DN609_RS01430 PF03466 LysR substrate binding domain DN609_RS01435 PF08903 Domain of unknown function (DUF1846) DN609_RS01450 PF00132 Bacterial transferase hexapeptide (six repeats) DN609_RS01455 PF00291 Pyridoxal-phosphate dependent enzyme DN609_RS01465 PF16916 Dimerisation domain of Zinc Transporter DN609_RS01465 PF01545 Cation efflux family DN609_RS01480 PF02219 Methylenetetrahydrofolate reductase DN609_RS01490 PF02607 B12 binding domain DN609_RS01490 PF02965 Vitamin B12 dependent methionine synthase, activation domain DN609_RS01490 PF02574 Homocysteine S-methyltransferase DN609_RS01490 PF00809 Pterin binding enzyme DN609_RS01490 PF02310 B12 binding domain DN609_RS01495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DN609_RS01495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DN609_RS01510 PF08361 MAATS-type transcriptional repressor, C-terminal region DN609_RS01510 PF00440 Bacterial regulatory proteins, tetR family DN609_RS01515 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DN609_RS01520 PF00480 ROK family DN609_RS01535 PF07702 UTRA domain DN609_RS01535 PF00392 Bacterial regulatory proteins, gntR family DN609_RS01540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DN609_RS01540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DN609_RS01550 PF00155 Aminotransferase class I and II DN609_RS01560 PF01546 Peptidase family M20/M25/M40 DN609_RS01565 PF00155 Aminotransferase class I and II DN609_RS01580 PF00675 Insulinase (Peptidase family M16) DN609_RS01580 PF05193 Peptidase M16 inactive domain DN609_RS01580 PF08367 Peptidase M16C associated DN609_RS01585 PF00892 EamA-like transporter family DN609_RS01600 PF02673 Bacitracin resistance protein BacA DN609_RS01605 PF01238 Phosphomannose isomerase type I DN609_RS01615 PF00768 D-alanyl-D-alanine carboxypeptidase DN609_RS01615 PF07943 Penicillin-binding protein 5, C-terminal domain DN609_RS01620 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DN609_RS01620 PF01409 tRNA synthetases class II core domain (F) DN609_RS01625 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DN609_RS01625 PF03147 Ferredoxin-fold anticodon binding domain DN609_RS01625 PF01588 Putative tRNA binding domain DN609_RS01625 PF03484 tRNA synthetase B5 domain DN609_RS01625 PF03483 B3/4 domain DN609_RS01650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DN609_RS01650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DN609_RS01655 PF00391 PEP-utilising enzyme, mobile domain DN609_RS01655 PF00224 Pyruvate kinase, barrel domain DN609_RS01655 PF02887 Pyruvate kinase, alpha/beta domain DN609_RS01665 PF00690 Cation transporter/ATPase, N-terminus DN609_RS01665 PF00689 Cation transporting ATPase, C-terminus DN609_RS01670 PF03193 RsgA GTPase DN609_RS01690 PF10609 NUBPL iron-transfer P-loop NTPase DN609_RS01695 PF00437 Type II/IV secretion system protein DN609_RS01760 PF00708 Acylphosphatase DN609_RS01765 PF02645 Uncharacterised protein, DegV family COG1307 DN609_RS01775 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DN609_RS01790 PF00285 Citrate synthase, C-terminal domain DN609_RS01795 PF02705 K+ potassium transporter DN609_RS01805 PF10672 S-adenosylmethionine-dependent methyltransferase DN609_RS01805 PF02926 THUMP domain DN609_RS01805 PF01170 Putative RNA methylase family UPF0020 DN609_RS01810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DN609_RS01810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DN609_RS01810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DN609_RS01810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DN609_RS01820 PF02863 Arginine repressor, C-terminal domain DN609_RS01820 PF01316 Arginine repressor, DNA binding domain DN609_RS01825 PF00905 Penicillin binding protein transpeptidase domain DN609_RS01825 PF00912 Transglycosylase DN609_RS01830 PF00579 tRNA synthetases class I (W and Y) DN609_RS01830 PF01479 S4 domain DN609_RS01835 PF16325 Peptidase family U32 C-terminal domain DN609_RS01835 PF01136 Peptidase family U32 DN609_RS01840 PF01106 NifU-like domain DN609_RS01845 PF01790 Prolipoprotein diacylglyceryl transferase DN609_RS01855 PF00145 C-5 cytosine-specific DNA methylase DN609_RS01895 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS01900 PF09084 NMT1/THI5 like DN609_RS01905 PF00005 ABC transporter DN609_RS01910 PF02127 Aminopeptidase I zinc metalloprotease (M18) DN609_RS01920 PF01116 Fructose-bisphosphate aldolase class-II DN609_RS01930 PF13276 HTH-like domain DN609_RS01930 PF00665 Integrase core domain DN609_RS01930 PF13333 Integrase core domain DN609_RS01935 PF00501 AMP-binding enzyme DN609_RS01935 PF13193 AMP-binding enzyme C-terminal domain DN609_RS01940 PF00550 Phosphopantetheine attachment site DN609_RS01945 PF03062 MBOAT, membrane-bound O-acyltransferase family DN609_RS01950 PF04914 DltD protein DN609_RS01955 PF11954 Domain of unknown function (DUF3471) DN609_RS01955 PF00144 Beta-lactamase DN609_RS01960 PF02082 Transcriptional regulator DN609_RS01965 PF01592 NifU-like N terminal domain DN609_RS01970 PF00266 Aminotransferase class-V DN609_RS01980 PF01458 Uncharacterized protein family (UPF0051) DN609_RS01985 PF00005 ABC transporter DN609_RS01995 PF01758 Sodium Bile acid symporter family DN609_RS02000 PF02686 Glu-tRNAGln amidotransferase C subunit DN609_RS02005 PF01425 Amidase DN609_RS02010 PF02637 GatB domain DN609_RS02010 PF02934 GatB/GatE catalytic domain DN609_RS02020 PF02653 Branched-chain amino acid transport system / permease component DN609_RS02025 PF00005 ABC transporter DN609_RS02040 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DN609_RS02040 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DN609_RS02045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DN609_RS02045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DN609_RS02060 PF00860 Permease family DN609_RS02065 PF01979 Amidohydrolase family DN609_RS02070 PF07992 Pyridine nucleotide-disulphide oxidoreductase DN609_RS02070 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DN609_RS02080 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DN609_RS02080 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DN609_RS02080 PF01799 [2Fe-2S] binding domain DN609_RS02080 PF00111 2Fe-2S iron-sulfur cluster binding domain DN609_RS02085 PF00005 ABC transporter DN609_RS02090 PF02653 Branched-chain amino acid transport system / permease component DN609_RS02095 PF02653 Branched-chain amino acid transport system / permease component DN609_RS02110 PF02608 ABC transporter substrate-binding protein PnrA-like DN609_RS02115 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DN609_RS02115 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DN609_RS02120 PF03450 CO dehydrogenase flavoprotein C-terminal domain DN609_RS02120 PF00941 FAD binding domain in molybdopterin dehydrogenase DN609_RS02125 PF00111 2Fe-2S iron-sulfur cluster binding domain DN609_RS02125 PF01799 [2Fe-2S] binding domain DN609_RS02140 PF00860 Permease family DN609_RS02145 PF01979 Amidohydrolase family DN609_RS02150 PF00291 Pyridoxal-phosphate dependent enzyme DN609_RS02155 PF07687 Peptidase dimerisation domain DN609_RS02155 PF01546 Peptidase family M20/M25/M40 DN609_RS02160 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DN609_RS02160 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DN609_RS02165 PF00696 Amino acid kinase family DN609_RS02170 PF03459 TOBE domain DN609_RS02170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DN609_RS02175 PF01979 Amidohydrolase family DN609_RS02180 PF01042 Endoribonuclease L-PSP DN609_RS02185 PF01741 Large-conductance mechanosensitive channel, MscL DN609_RS02195 PF01206 Sulfurtransferase TusA DN609_RS02205 PF00586 AIR synthase related protein, N-terminal domain DN609_RS02205 PF02769 AIR synthase related protein, C-terminal domain DN609_RS02210 PF01653 NAD-dependent DNA ligase adenylation domain DN609_RS02210 PF03120 NAD-dependent DNA ligase OB-fold domain DN609_RS02210 PF12826 Helix-hairpin-helix motif DN609_RS02210 PF00533 BRCA1 C Terminus (BRCT) domain DN609_RS02210 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DN609_RS02225 PF01546 Peptidase family M20/M25/M40 DN609_RS02260 PF01384 Phosphate transporter family DN609_RS02275 PF01063 Amino-transferase class IV DN609_RS02285 PF13393 Histidyl-tRNA synthetase DN609_RS02285 PF03129 Anticodon binding domain DN609_RS02290 PF00849 RNA pseudouridylate synthase DN609_RS02290 PF01479 S4 domain DN609_RS02310 PF01522 Polysaccharide deacetylase DN609_RS02315 PF00005 ABC transporter DN609_RS02315 PF00664 ABC transporter transmembrane region DN609_RS02320 PF00005 ABC transporter DN609_RS02320 PF00664 ABC transporter transmembrane region DN609_RS02330 PF12437 Glutamine synthetase type III N terminal DN609_RS02330 PF18318 Glutamine synthetase C-terminal domain DN609_RS02330 PF00120 Glutamine synthetase, catalytic domain DN609_RS02345 PF00575 S1 RNA binding domain DN609_RS02350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DN609_RS02355 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS02360 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS02360 PF12911 N-terminal TM domain of oligopeptide transport permease C DN609_RS02365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DN609_RS02365 PF00005 ABC transporter DN609_RS02370 PF07687 Peptidase dimerisation domain DN609_RS02370 PF01546 Peptidase family M20/M25/M40 DN609_RS02375 PF05343 M42 glutamyl aminopeptidase DN609_RS02390 PF13722 5TM C-terminal transporter carbon starvation CstA DN609_RS02390 PF02554 Carbon starvation protein CstA DN609_RS02395 PF13276 HTH-like domain DN609_RS02395 PF00665 Integrase core domain DN609_RS02395 PF13333 Integrase core domain DN609_RS02415 PF00005 ABC transporter DN609_RS02420 PF00294 pfkB family carbohydrate kinase DN609_RS02435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DN609_RS02440 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DN609_RS02445 PF01116 Fructose-bisphosphate aldolase class-II DN609_RS02450 PF02595 Glycerate kinase family DN609_RS02455 PF13193 AMP-binding enzyme C-terminal domain DN609_RS02455 PF00501 AMP-binding enzyme DN609_RS02460 PF01144 Coenzyme A transferase DN609_RS02465 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DN609_RS02465 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DN609_RS02470 PF02803 Thiolase, C-terminal domain DN609_RS02470 PF00108 Thiolase, N-terminal domain DN609_RS02475 PF00465 Iron-containing alcohol dehydrogenase DN609_RS02500 PF00271 Helicase conserved C-terminal domain DN609_RS02500 PF00176 SNF2 family N-terminal domain DN609_RS02515 PF02774 Semialdehyde dehydrogenase, dimerisation domain DN609_RS02515 PF01118 Semialdehyde dehydrogenase, NAD binding domain DN609_RS02520 PF01960 ArgJ family DN609_RS02525 PF00696 Amino acid kinase family DN609_RS02530 PF00202 Aminotransferase class-III DN609_RS02535 PF00753 Metallo-beta-lactamase superfamily DN609_RS02535 PF00258 Flavodoxin DN609_RS02540 PF11700 Vacuole effluxer Atg22 like DN609_RS02550 PF03852 DNA mismatch endonuclease Vsr DN609_RS02555 PF00149 Calcineurin-like phosphoesterase DN609_RS02575 PF13286 Phosphohydrolase-associated domain DN609_RS02575 PF01966 HD domain DN609_RS02590 PF00557 Metallopeptidase family M24 DN609_RS02595 PF01925 Sulfite exporter TauE/SafE DN609_RS02600 PF18074 Primosomal protein N C-terminal domain DN609_RS02600 PF17764 3′ DNA-binding domain (3′BD) DN609_RS02600 PF00271 Helicase conserved C-terminal domain DN609_RS02600 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DN609_RS02600 PF04851 Type III restriction enzyme, res subunit DN609_RS02605 PF01327 Polypeptide deformylase DN609_RS02610 PF02911 Formyl transferase, C-terminal domain DN609_RS02610 PF00551 Formyl transferase DN609_RS02620 PF01029 NusB family DN609_RS02620 PF01189 16S rRNA methyltransferase RsmB/F DN609_RS02630 PF00005 ABC transporter DN609_RS02630 PF00664 ABC transporter transmembrane region DN609_RS02635 PF00664 ABC transporter transmembrane region DN609_RS02635 PF00005 ABC transporter DN609_RS02655 PF00830 Ribosomal L28 family DN609_RS02660 PF13086 AAA domain DN609_RS02660 PF13195 Protein of unknown function (DUF4011) DN609_RS02660 PF13087 AAA domain DN609_RS02705 PF00310 Glutamine amidotransferases class-II DN609_RS02705 PF04898 Glutamate synthase central domain DN609_RS02705 PF01645 Conserved region in glutamate synthase DN609_RS02705 PF01493 GXGXG motif DN609_RS02710 PF07992 Pyridine nucleotide-disulphide oxidoreductase DN609_RS02710 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DN609_RS02730 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS02735 PF08402 TOBE domain DN609_RS02735 PF00005 ABC transporter DN609_RS02740 PF00890 FAD binding domain DN609_RS02740 PF02910 Fumarate reductase flavoprotein C-term DN609_RS02745 PF01502 Phosphoribosyl-AMP cyclohydrolase DN609_RS02750 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DN609_RS02765 PF02151 UvrB/uvrC motif DN609_RS02765 PF01541 GIY-YIG catalytic domain DN609_RS02765 PF08459 UvrC Helix-hairpin-helix N-terminal DN609_RS02770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DN609_RS02775 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS02780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DN609_RS02780 PF00005 ABC transporter DN609_RS02785 PF00005 ABC transporter DN609_RS02785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DN609_RS02800 PF00701 Dihydrodipicolinate synthetase family DN609_RS02805 PF00480 ROK family DN609_RS02810 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DN609_RS02820 PF00455 DeoR C terminal sensor domain DN609_RS02820 PF08220 DeoR-like helix-turn-helix domain DN609_RS02825 PF00294 pfkB family carbohydrate kinase DN609_RS02830 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DN609_RS02830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DN609_RS02835 PF03668 P-loop ATPase protein family DN609_RS02840 PF10298 WhiA N-terminal LAGLIDADG-like domain DN609_RS02840 PF02650 WhiA C-terminal HTH domain DN609_RS02840 PF14527 WhiA LAGLIDADG-like domain DN609_RS02850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DN609_RS02855 PF02633 Creatinine amidohydrolase DN609_RS02860 PF02633 Creatinine amidohydrolase DN609_RS02865 PF05343 M42 glutamyl aminopeptidase DN609_RS02870 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DN609_RS02870 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DN609_RS02875 PF00162 Phosphoglycerate kinase DN609_RS02880 PF00121 Triosephosphate isomerase DN609_RS02885 PF03840 Preprotein translocase SecG subunit DN609_RS02890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DN609_RS02895 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS02900 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS02900 PF12911 N-terminal TM domain of oligopeptide transport permease C DN609_RS02905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DN609_RS02905 PF00005 ABC transporter DN609_RS02910 PF00005 ABC transporter DN609_RS02910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DN609_RS02925 PF13466 STAS domain DN609_RS02925 PF07228 Stage II sporulation protein E (SpoIIE) DN609_RS02925 PF13581 Histidine kinase-like ATPase domain DN609_RS02925 PF08448 PAS fold DN609_RS02965 PF00266 Aminotransferase class-V DN609_RS03095 PF00574 Clp protease DN609_RS03180 PF01510 N-acetylmuramoyl-L-alanine amidase DN609_RS03180 PF01471 Putative peptidoglycan binding domain DN609_RS03185 PF00665 Integrase core domain DN609_RS03185 PF13333 Integrase core domain DN609_RS03185 PF13276 HTH-like domain DN609_RS03190 PF13936 Helix-turn-helix domain DN609_RS03190 PF00665 Integrase core domain DN609_RS03195 PF13936 Helix-turn-helix domain DN609_RS03240 PF16363 GDP-mannose 4,6 dehydratase DN609_RS03250 PF00075 RNase H DN609_RS03255 PF01367 5'-3' exonuclease, C-terminal SAM fold DN609_RS03255 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DN609_RS03255 PF00476 DNA polymerase family A DN609_RS03260 PF00486 Transcriptional regulatory protein, C terminal DN609_RS03260 PF00072 Response regulator receiver domain DN609_RS03265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DN609_RS03270 PF00005 ABC transporter DN609_RS03280 PF02445 Quinolinate synthetase A protein DN609_RS03285 PF00890 FAD binding domain DN609_RS03290 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DN609_RS03290 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DN609_RS03295 PF08279 HTH domain DN609_RS03295 PF02829 3H domain DN609_RS03305 PF13276 HTH-like domain DN609_RS03305 PF00665 Integrase core domain DN609_RS03305 PF13333 Integrase core domain DN609_RS03315 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS03315 PF14310 Fibronectin type III-like domain DN609_RS03315 PF01915 Glycosyl hydrolase family 3 C-terminal domain DN609_RS03335 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DN609_RS03335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DN609_RS03345 PF07478 D-ala D-ala ligase C-terminus DN609_RS03345 PF01820 D-ala D-ala ligase N-terminus DN609_RS03350 PF00575 S1 RNA binding domain DN609_RS03350 PF09371 Tex-like protein N-terminal domain DN609_RS03350 PF16921 Tex protein YqgF-like domain DN609_RS03350 PF17674 HHH domain DN609_RS03355 PF11842 Domain of unknown function (DUF3362) DN609_RS03355 PF08497 Radical SAM N-terminal DN609_RS03355 PF04055 Radical SAM superfamily DN609_RS03360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DN609_RS03360 PF07992 Pyridine nucleotide-disulphide oxidoreductase DN609_RS03375 PF00403 Heavy-metal-associated domain DN609_RS03380 PF00403 Heavy-metal-associated domain DN609_RS03385 PF01022 Bacterial regulatory protein, arsR family DN609_RS03390 PF00156 Phosphoribosyl transferase domain DN609_RS03395 PF03462 PCRF domain DN609_RS03395 PF00472 RF-1 domain DN609_RS03400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DN609_RS03400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DN609_RS03405 PF01648 4'-phosphopantetheinyl transferase superfamily DN609_RS03410 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DN609_RS03410 PF01799 [2Fe-2S] binding domain DN609_RS03410 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DN609_RS03420 PF00664 ABC transporter transmembrane region DN609_RS03420 PF00005 ABC transporter DN609_RS03425 PF00664 ABC transporter transmembrane region DN609_RS03425 PF00005 ABC transporter DN609_RS03430 PF03466 LysR substrate binding domain DN609_RS03430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DN609_RS03435 PF17910 FeoB cytosolic helical domain DN609_RS03435 PF04023 FeoA domain DN609_RS03435 PF02421 Ferrous iron transport protein B DN609_RS03435 PF07664 Ferrous iron transport protein B C terminus DN609_RS03435 PF07670 Nucleoside recognition DN609_RS03450 PF03780 Asp23 family, cell envelope-related function DN609_RS03455 PF13684 Dihydroxyacetone kinase family DN609_RS03455 PF02734 DAK2 domain DN609_RS03460 PF17191 RecG wedge domain DN609_RS03460 PF00271 Helicase conserved C-terminal domain DN609_RS03460 PF00270 DEAD/DEAH box helicase DN609_RS03470 PF01467 Cytidylyltransferase-like DN609_RS03485 PF01783 Ribosomal L32p protein family DN609_RS03490 PF02504 Fatty acid synthesis protein DN609_RS03495 PF00550 Phosphopantetheine attachment site DN609_RS03500 PF14622 Ribonuclease-III-like DN609_RS03500 PF00035 Double-stranded RNA binding motif DN609_RS03505 PF06470 SMC proteins Flexible Hinge Domain DN609_RS03505 PF02463 RecF/RecN/SMC N terminal domain DN609_RS03510 PF02881 SRP54-type protein, helical bundle domain DN609_RS03510 PF00448 SRP54-type protein, GTPase domain DN609_RS03515 PF00448 SRP54-type protein, GTPase domain DN609_RS03515 PF02978 Signal peptide binding domain DN609_RS03515 PF02881 SRP54-type protein, helical bundle domain DN609_RS03525 PF00588 SpoU rRNA Methylase family DN609_RS03530 PF06874 Firmicute fructose-1,6-bisphosphatase DN609_RS03535 PF00004 ATPase family associated with various cellular activities (AAA) DN609_RS03535 PF17862 AAA+ lid domain DN609_RS03535 PF01434 Peptidase family M41 DN609_RS03535 PF06480 FtsH Extracellular DN609_RS03545 PF11798 IMS family HHH motif DN609_RS03545 PF11799 impB/mucB/samB family C-terminal domain DN609_RS03545 PF00817 impB/mucB/samB family DN609_RS03560 PF00133 tRNA synthetases class I (I, L, M and V) DN609_RS03560 PF06827 Zinc finger found in FPG and IleRS DN609_RS03560 PF08264 Anticodon-binding domain of tRNA DN609_RS03565 PF01252 Signal peptidase (SPase) II DN609_RS03570 PF13419 Haloacid dehalogenase-like hydrolase DN609_RS03585 PF13419 Haloacid dehalogenase-like hydrolase DN609_RS03595 PF03109 ABC1 family DN609_RS03620 PF00535 Glycosyl transferase family 2 DN609_RS03625 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DN609_RS03665 PF03734 L,D-transpeptidase catalytic domain DN609_RS03675 PF00892 EamA-like transporter family DN609_RS03680 PF12804 MobA-like NTP transferase domain DN609_RS03705 PF04991 LicD family DN609_RS03715 PF00535 Glycosyl transferase family 2 DN609_RS03720 PF00535 Glycosyl transferase family 2 DN609_RS03725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DN609_RS03725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DN609_RS03725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DN609_RS03740 PF00535 Glycosyl transferase family 2 DN609_RS03745 PF01501 Glycosyl transferase family 8 DN609_RS03745 PF00535 Glycosyl transferase family 2 DN609_RS03750 PF00535 Glycosyl transferase family 2 DN609_RS03765 PF00313 'Cold-shock' DNA-binding domain DN609_RS03770 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DN609_RS03770 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DN609_RS03775 PF01842 ACT domain DN609_RS03775 PF10369 Small subunit of acetolactate synthase DN609_RS03780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DN609_RS03780 PF00205 Thiamine pyrophosphate enzyme, central domain DN609_RS03780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DN609_RS03785 PF00920 Dehydratase family DN609_RS03790 PF00291 Pyridoxal-phosphate dependent enzyme DN609_RS03790 PF13291 ACT domain DN609_RS03795 PF00005 ABC transporter DN609_RS03810 PF00953 Glycosyl transferase family 4 DN609_RS03825 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DN609_RS03825 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DN609_RS03830 PF00750 tRNA synthetases class I (R) DN609_RS03830 PF03485 Arginyl tRNA synthetase N terminal domain DN609_RS03830 PF05746 DALR anticodon binding domain DN609_RS03840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DN609_RS03840 PF07498 Rho termination factor, N-terminal domain DN609_RS03840 PF07497 Rho termination factor, RNA-binding domain DN609_RS03860 PF02653 Branched-chain amino acid transport system / permease component DN609_RS03865 PF02653 Branched-chain amino acid transport system / permease component DN609_RS03865 PF11862 Domain of unknown function (DUF3382) DN609_RS03870 PF00005 ABC transporter DN609_RS03870 PF12399 Branched-chain amino acid ATP-binding cassette transporter DN609_RS03875 PF00005 ABC transporter DN609_RS03885 PF08544 GHMP kinases C terminal DN609_RS03885 PF00288 GHMP kinases N terminal domain DN609_RS03890 PF00291 Pyridoxal-phosphate dependent enzyme DN609_RS03890 PF14821 Threonine synthase N terminus DN609_RS03895 PF03447 Homoserine dehydrogenase, NAD binding domain DN609_RS03895 PF00742 Homoserine dehydrogenase DN609_RS03895 PF01842 ACT domain DN609_RS03900 PF00696 Amino acid kinase family DN609_RS03900 PF13840 ACT domain DN609_RS03905 PF02774 Semialdehyde dehydrogenase, dimerisation domain DN609_RS03905 PF01118 Semialdehyde dehydrogenase, NAD binding domain DN609_RS03910 PF00561 alpha/beta hydrolase fold DN609_RS03915 PF00561 alpha/beta hydrolase fold DN609_RS03920 PF00849 RNA pseudouridylate synthase DN609_RS03920 PF01479 S4 domain DN609_RS03930 PF00478 IMP dehydrogenase / GMP reductase domain DN609_RS03930 PF00571 CBS domain DN609_RS03935 PF14310 Fibronectin type III-like domain DN609_RS03935 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS03935 PF01915 Glycosyl hydrolase family 3 C-terminal domain DN609_RS03955 PF09334 tRNA synthetases class I (M) DN609_RS03955 PF13603 Leucyl-tRNA synthetase, Domain 2 DN609_RS03955 PF08264 Anticodon-binding domain of tRNA DN609_RS03955 PF00133 tRNA synthetases class I (I, L, M and V) DN609_RS03960 PF03576 Peptidase family S58 DN609_RS03965 PF02576 RimP N-terminal domain DN609_RS03965 PF17384 RimP C-terminal SH3 domain DN609_RS03970 PF13184 NusA-like KH domain DN609_RS03970 PF08529 NusA N-terminal domain DN609_RS03970 PF00575 S1 RNA binding domain DN609_RS03975 PF04760 Translation initiation factor IF-2, N-terminal region DN609_RS03975 PF11987 Translation-initiation factor 2 DN609_RS03975 PF04760 Translation initiation factor IF-2, N-terminal region DN609_RS03975 PF00009 Elongation factor Tu GTP binding domain DN609_RS03975 PF11987 Translation-initiation factor 2 DN609_RS03975 PF00009 Elongation factor Tu GTP binding domain DN609_RS03980 PF02033 Ribosome-binding factor A DN609_RS03990 PF01509 TruB family pseudouridylate synthase (N terminal domain) DN609_RS03990 PF09142 tRNA Pseudouridine synthase II, C terminal DN609_RS03990 PF16198 tRNA pseudouridylate synthase B C-terminal domain DN609_RS03995 PF06574 FAD synthetase DN609_RS03995 PF01687 Riboflavin kinase DN609_RS04000 PF08278 DNA primase DnaG DnaB-binding DN609_RS04000 PF13662 Toprim domain DN609_RS04000 PF10410 DnaB-helicase binding domain of primase DN609_RS04000 PF01807 CHC2 zinc finger DN609_RS04000 PF08275 DNA primase catalytic core, N-terminal domain DN609_RS04005 PF04545 Sigma-70, region 4 DN609_RS04005 PF00140 Sigma-70 factor, region 1.2 DN609_RS04005 PF04539 Sigma-70 region 3 DN609_RS04005 PF03979 Sigma-70 factor, region 1.1 DN609_RS04005 PF04542 Sigma-70 region 2 DN609_RS04030 PF00005 ABC transporter DN609_RS04035 PF00156 Phosphoribosyl transferase domain DN609_RS04040 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DN609_RS04040 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DN609_RS04045 PF01979 Amidohydrolase family DN609_RS04050 PF00175 Oxidoreductase NAD-binding domain DN609_RS04050 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DN609_RS04055 PF01180 Dihydroorotate dehydrogenase DN609_RS04060 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DN609_RS04070 PF00625 Guanylate kinase DN609_RS04080 PF02568 Thiamine biosynthesis protein (ThiI) DN609_RS04080 PF02926 THUMP domain DN609_RS04085 PF10531 SLBB domain DN609_RS04090 PF13567 Domain of unknown function (DUF4131) DN609_RS04090 PF00753 Metallo-beta-lactamase superfamily DN609_RS04090 PF03772 Competence protein DN609_RS04100 PF01649 Ribosomal protein S20 DN609_RS04105 PF00679 Elongation factor G C-terminus DN609_RS04105 PF06421 GTP-binding protein LepA C-terminus DN609_RS04105 PF03144 Elongation factor Tu domain 2 DN609_RS04105 PF00009 Elongation factor Tu GTP binding domain DN609_RS04110 PF01207 Dihydrouridine synthase (Dus) DN609_RS04115 PF06969 HemN C-terminal domain DN609_RS04115 PF04055 Radical SAM superfamily DN609_RS04120 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DN609_RS04125 PF00226 DnaJ domain DN609_RS04125 PF00684 DnaJ central domain DN609_RS04125 PF01556 DnaJ C terminal domain DN609_RS04130 PF01556 DnaJ C terminal domain DN609_RS04130 PF00226 DnaJ domain DN609_RS04130 PF00684 DnaJ central domain DN609_RS04135 PF04055 Radical SAM superfamily DN609_RS04135 PF00919 Uncharacterized protein family UPF0004 DN609_RS04140 PF02562 PhoH-like protein DN609_RS04145 PF02130 Uncharacterized protein family UPF0054 DN609_RS04150 PF01219 Prokaryotic diacylglycerol kinase DN609_RS04155 PF07650 KH domain DN609_RS04155 PF01926 50S ribosome-binding GTPase DN609_RS04160 PF02565 Recombination protein O C terminal DN609_RS04160 PF11967 Recombination protein O N terminal DN609_RS04165 PF00312 Ribosomal protein S15 DN609_RS04170 PF00575 S1 RNA binding domain DN609_RS04170 PF03725 3' exoribonuclease family, domain 2 DN609_RS04170 PF01138 3' exoribonuclease family, domain 1 DN609_RS04170 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DN609_RS04170 PF00013 KH domain DN609_RS04175 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DN609_RS04175 PF00753 Metallo-beta-lactamase superfamily DN609_RS04175 PF17770 Ribonuclease J C-terminal domain DN609_RS04180 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DN609_RS04180 PF17854 FtsK alpha domain DN609_RS04180 PF09397 Ftsk gamma domain DN609_RS04180 PF01580 FtsK/SpoIIIE family DN609_RS04190 PF04461 Protein of unknown function (DUF520) DN609_RS04195 PF18693 TRAM domain DN609_RS04195 PF00919 Uncharacterized protein family UPF0004 DN609_RS04195 PF04055 Radical SAM superfamily DN609_RS04200 PF01066 CDP-alcohol phosphatidyltransferase DN609_RS04205 PF00994 Probable molybdopterin binding domain DN609_RS04205 PF02464 Competence-damaged protein DN609_RS04210 PF00154 recA bacterial DNA recombination protein DN609_RS04215 PF02631 RecX family DN609_RS04220 PF00013 KH domain DN609_RS04220 PF01966 HD domain DN609_RS04220 PF12072 Domain of unknown function (DUF3552) DN609_RS04225 PF00512 His Kinase A (phospho-acceptor) domain DN609_RS04225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DN609_RS04230 PF04232 Stage V sporulation protein S (SpoVS) DN609_RS04235 PF04055 Radical SAM superfamily DN609_RS04235 PF01938 TRAM domain DN609_RS04235 PF00919 Uncharacterized protein family UPF0004 DN609_RS04245 PF13167 GTP-binding GTPase N-terminal DN609_RS04245 PF01926 50S ribosome-binding GTPase DN609_RS04245 PF16360 GTP-binding GTPase Middle Region DN609_RS04255 PF00717 Peptidase S24-like DN609_RS04255 PF01726 LexA DNA binding domain DN609_RS04265 PF03477 ATP cone domain DN609_RS04270 PF00692 dUTPase DN609_RS04280 PF07992 Pyridine nucleotide-disulphide oxidoreductase DN609_RS04285 PF00654 Voltage gated chloride channel DN609_RS04295 PF01476 LysM domain DN609_RS04295 PF00877 NlpC/P60 family DN609_RS04300 PF00156 Phosphoribosyl transferase domain DN609_RS04305 PF00376 MerR family regulatory protein DN609_RS04310 PF00498 FHA domain DN609_RS04315 PF01042 Endoribonuclease L-PSP DN609_RS04325 PF01066 CDP-alcohol phosphatidyltransferase DN609_RS04330 PF01471 Putative peptidoglycan binding domain DN609_RS04330 PF01510 N-acetylmuramoyl-L-alanine amidase DN609_RS04450 PF13274 Protein of unknown function (DUF4065) DN609_RS04475 PF02899 Phage integrase, N-terminal SAM-like domain DN609_RS04475 PF00589 Phage integrase family DN609_RS04575 PF07687 Peptidase dimerisation domain DN609_RS04575 PF01546 Peptidase family M20/M25/M40 DN609_RS04585 PF01926 50S ribosome-binding GTPase DN609_RS04585 PF01018 GTP1/OBG DN609_RS04585 PF04055 Radical SAM superfamily DN609_RS04595 PF07992 Pyridine nucleotide-disulphide oxidoreductase DN609_RS04595 PF04324 BFD-like [2Fe-2S] binding domain DN609_RS04600 PF01266 FAD dependent oxidoreductase DN609_RS04600 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DN609_RS04605 PF00005 ABC transporter DN609_RS04605 PF12848 ABC transporter DN609_RS04605 PF16326 ABC transporter C-terminal domain DN609_RS04610 PF01261 Xylose isomerase-like TIM barrel DN609_RS04615 PF02441 Flavoprotein DN609_RS04615 PF04127 DNA / pantothenate metabolism flavoprotein DN609_RS04625 PF00266 Aminotransferase class-V DN609_RS04630 PF00834 Ribulose-phosphate 3 epimerase family DN609_RS04635 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DN609_RS04635 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DN609_RS04640 PF02660 Glycerol-3-phosphate acyltransferase DN609_RS04645 PF01926 50S ribosome-binding GTPase DN609_RS04645 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DN609_RS04655 PF02401 LytB protein DN609_RS04665 PF02224 Cytidylate kinase DN609_RS04670 PF01479 S4 domain DN609_RS04670 PF00849 RNA pseudouridylate synthase DN609_RS04675 PF04079 Segregation and condensation complex subunit ScpB DN609_RS04680 PF02616 Segregation and condensation protein ScpA DN609_RS04685 PF02163 Peptidase family M50 DN609_RS04695 PF00005 ABC transporter DN609_RS04695 PF16326 ABC transporter C-terminal domain DN609_RS04695 PF12848 ABC transporter DN609_RS04700 PF01757 Acyltransferase family DN609_RS04740 PF00155 Aminotransferase class I and II DN609_RS04745 PF01070 FMN-dependent dehydrogenase DN609_RS04750 PF04073 Aminoacyl-tRNA editing domain DN609_RS04750 PF03129 Anticodon binding domain DN609_RS04750 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DN609_RS04755 PF04551 GcpE protein DN609_RS04760 PF02163 Peptidase family M50 DN609_RS04760 PF13180 PDZ domain DN609_RS04765 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DN609_RS04765 PF13288 DXP reductoisomerase C-terminal domain DN609_RS04765 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DN609_RS04775 PF01255 Putative undecaprenyl diphosphate synthase DN609_RS04780 PF01765 Ribosome recycling factor DN609_RS04785 PF00696 Amino acid kinase family DN609_RS04790 PF00889 Elongation factor TS DN609_RS04795 PF00318 Ribosomal protein S2 DN609_RS04800 PF00589 Phage integrase family DN609_RS04800 PF02899 Phage integrase, N-terminal SAM-like domain DN609_RS04805 PF01134 Glucose inhibited division protein A DN609_RS04810 PF18255 DNA processing protein A sterile alpha motif domain DN609_RS04810 PF02481 DNA recombination-mediator protein A DN609_RS04815 PF13335 Magnesium chelatase, subunit ChlI C-terminal DN609_RS04815 PF01078 Magnesium chelatase, subunit ChlI DN609_RS04820 PF02021 Uncharacterised protein family UPF0102 DN609_RS04825 PF01351 Ribonuclease HII DN609_RS04830 PF01245 Ribosomal protein L19 DN609_RS04840 PF01966 HD domain DN609_RS04840 PF13286 Phosphohydrolase-associated domain DN609_RS04845 PF00391 PEP-utilising enzyme, mobile domain DN609_RS04845 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DN609_RS04845 PF02896 PEP-utilising enzyme, TIM barrel domain DN609_RS04850 PF03618 Kinase/pyrophosphorylase DN609_RS04855 PF02092 Glycyl-tRNA synthetase beta subunit DN609_RS04855 PF05746 DALR anticodon binding domain DN609_RS04860 PF02091 Glycyl-tRNA synthetase alpha subunit DN609_RS04865 PF10502 Signal peptidase, peptidase S26 DN609_RS04870 PF01746 tRNA (Guanine-1)-methyltransferase DN609_RS04885 PF00886 Ribosomal protein S16 DN609_RS04890 PF00486 Transcriptional regulatory protein, C terminal DN609_RS04890 PF00072 Response regulator receiver domain DN609_RS04895 PF00512 His Kinase A (phospho-acceptor) domain DN609_RS04895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DN609_RS04900 PF11799 impB/mucB/samB family C-terminal domain DN609_RS04900 PF00817 impB/mucB/samB family DN609_RS04915 PF01467 Cytidylyltransferase-like DN609_RS04920 PF00171 Aldehyde dehydrogenase family DN609_RS04925 PF01472 PUA domain DN609_RS04925 PF00696 Amino acid kinase family DN609_RS04930 PF01926 50S ribosome-binding GTPase DN609_RS04930 PF09269 Domain of unknown function (DUF1967) DN609_RS04930 PF01018 GTP1/OBG DN609_RS04935 PF01016 Ribosomal L27 protein DN609_RS04940 PF00829 Ribosomal prokaryotic L21 protein DN609_RS04960 PF01098 Cell cycle protein DN609_RS04965 PF03717 Penicillin-binding Protein dimerisation domain DN609_RS04965 PF00905 Penicillin binding protein transpeptidase domain DN609_RS04975 PF04085 rod shape-determining protein MreC DN609_RS04990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DN609_RS05010 PF18152 DAHP synthase ferredoxin-like domain DN609_RS05010 PF00793 DAHP synthetase I family DN609_RS05015 PF02153 Prephenate dehydrogenase DN609_RS05020 PF01761 3-dehydroquinate synthase DN609_RS05025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DN609_RS05030 PF01264 Chorismate synthase DN609_RS05035 PF00800 Prephenate dehydratase DN609_RS05035 PF01817 Chorismate mutase type II DN609_RS05040 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DN609_RS05040 PF01488 Shikimate / quinate 5-dehydrogenase DN609_RS05040 PF08501 Shikimate dehydrogenase substrate binding domain DN609_RS05045 PF01220 Dehydroquinase class II DN609_RS05050 PF01812 5-formyltetrahydrofolate cyclo-ligase family DN609_RS05055 PF00579 tRNA synthetases class I (W and Y) DN609_RS05150 PF00574 Clp protease DN609_RS05225 PF06470 SMC proteins Flexible Hinge Domain DN609_RS05225 PF02463 RecF/RecN/SMC N terminal domain DN609_RS05245 PF10548 P22AR C-terminal domain DN609_RS05245 PF02498 BRO family, N-terminal domain DN609_RS05265 PF00589 Phage integrase family DN609_RS05270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DN609_RS05270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DN609_RS05280 PF13089 Polyphosphate kinase N-terminal domain DN609_RS05280 PF13090 Polyphosphate kinase C-terminal domain 2 DN609_RS05280 PF17941 Polyphosphate kinase C-terminal domain 1 DN609_RS05280 PF02503 Polyphosphate kinase middle domain DN609_RS05285 PF01938 TRAM domain DN609_RS05285 PF05958 tRNA (Uracil-5-)-methyltransferase DN609_RS05295 PF02545 Maf-like protein DN609_RS05305 PF03275 UDP-galactopyranose mutase DN609_RS05310 PF01515 Phosphate acetyl/butaryl transferase DN609_RS05320 PF00005 ABC transporter DN609_RS05350 PF01293 Phosphoenolpyruvate carboxykinase DN609_RS05360 PF00266 Aminotransferase class-V DN609_RS05380 PF00266 Aminotransferase class-V DN609_RS05390 PF00005 ABC transporter DN609_RS05410 PF07722 Peptidase C26 DN609_RS05415 PF00005 ABC transporter DN609_RS05420 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS05425 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS05430 PF00497 Bacterial extracellular solute-binding proteins, family 3 DN609_RS05435 PF00871 Acetokinase family DN609_RS05450 PF02609 Exonuclease VII small subunit DN609_RS05455 PF02601 Exonuclease VII, large subunit DN609_RS05455 PF13742 OB-fold nucleic acid binding domain DN609_RS05460 PF04298 Putative neutral zinc metallopeptidase DN609_RS05465 PF01612 3'-5' exonuclease DN609_RS05465 PF00570 HRDC domain DN609_RS05470 PF02142 MGS-like domain DN609_RS05470 PF00781 Diacylglycerol kinase catalytic domain DN609_RS05475 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DN609_RS05475 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DN609_RS05490 PF00303 Thymidylate synthase DN609_RS05515 PF00171 Aldehyde dehydrogenase family DN609_RS05515 PF00465 Iron-containing alcohol dehydrogenase DN609_RS05520 PF01053 Cys/Met metabolism PLP-dependent enzyme DN609_RS05525 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DN609_RS05525 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DN609_RS05525 PF02824 TGS domain DN609_RS05525 PF03129 Anticodon binding domain DN609_RS05535 PF02875 Mur ligase family, glutamate ligase domain DN609_RS05535 PF08245 Mur ligase middle domain DN609_RS05540 PF01227 GTP cyclohydrolase I DN609_RS05545 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DN609_RS05545 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DN609_RS05550 PF04961 Formiminotransferase-cyclodeaminase DN609_RS05555 PF01268 Formate--tetrahydrofolate ligase DN609_RS05565 PF00701 Dihydrodipicolinate synthetase family DN609_RS05570 PF05025 RbsD / FucU transport protein family DN609_RS05575 PF04909 Amidohydrolase DN609_RS05580 PF07690 Major Facilitator Superfamily DN609_RS05590 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DN609_RS05590 PF08666 SAF domain DN609_RS05595 PF01614 Bacterial transcriptional regulator DN609_RS05595 PF09339 IclR helix-turn-helix domain DN609_RS05600 PF00899 ThiF family DN609_RS05605 PF00133 tRNA synthetases class I (I, L, M and V) DN609_RS05605 PF10458 Valyl tRNA synthetase tRNA binding arm DN609_RS05605 PF08264 Anticodon-binding domain of tRNA DN609_RS05610 PF01026 TatD related DNase DN609_RS05620 PF07724 AAA domain (Cdc48 subfamily) DN609_RS05620 PF06689 ClpX C4-type zinc finger DN609_RS05620 PF10431 C-terminal, D2-small domain, of ClpB protein DN609_RS05625 PF00574 Clp protease DN609_RS05630 PF05698 Bacterial trigger factor protein (TF) C-terminus DN609_RS05630 PF05697 Bacterial trigger factor protein (TF) DN609_RS05630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DN609_RS05640 PF02142 MGS-like domain DN609_RS05640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DN609_RS05640 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DN609_RS05645 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DN609_RS05645 PF00117 Glutamine amidotransferase class-I DN609_RS05650 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DN609_RS05650 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DN609_RS05665 PF00781 Diacylglycerol kinase catalytic domain DN609_RS05670 PF05524 PEP-utilising enzyme, N-terminal DN609_RS05670 PF00391 PEP-utilising enzyme, mobile domain DN609_RS05670 PF02896 PEP-utilising enzyme, TIM barrel domain DN609_RS05675 PF00294 pfkB family carbohydrate kinase DN609_RS05685 PF00293 NUDIX domain DN609_RS05710 PF00271 Helicase conserved C-terminal domain DN609_RS05710 PF12419 SNF2 Helicase protein DN609_RS05710 PF00176 SNF2 family N-terminal domain DN609_RS05715 PF00453 Ribosomal protein L20 DN609_RS05720 PF01632 Ribosomal protein L35 DN609_RS05740 PF00753 Metallo-beta-lactamase superfamily DN609_RS05740 PF16123 Hydroxyacylglutathione hydrolase C-terminus DN609_RS05745 PF02824 TGS domain DN609_RS05745 PF04607 Region found in RelA / SpoT proteins DN609_RS05745 PF13291 ACT domain DN609_RS05750 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DN609_RS05750 PF17768 RecJ OB domain DN609_RS05750 PF01368 DHH family DN609_RS05750 PF02272 DHHA1 domain DN609_RS05755 PF07549 SecD/SecF GG Motif DN609_RS05755 PF02355 Protein export membrane protein DN609_RS05760 PF02355 Protein export membrane protein DN609_RS05765 PF01702 Queuine tRNA-ribosyltransferase DN609_RS05770 PF00381 PTS HPr component phosphorylation site DN609_RS05780 PF02547 Queuosine biosynthesis protein DN609_RS05785 PF02677 Epoxyqueuosine reductase QueH DN609_RS05795 PF01588 Putative tRNA binding domain DN609_RS05795 PF09334 tRNA synthetases class I (M) DN609_RS05795 PF08264 Anticodon-binding domain of tRNA DN609_RS05805 PF16736 Single Cache-like DN609_RS05805 PF00989 PAS fold DN609_RS05805 PF00512 His Kinase A (phospho-acceptor) domain DN609_RS05805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DN609_RS05810 PF00072 Response regulator receiver domain DN609_RS05810 PF00486 Transcriptional regulatory protein, C terminal DN609_RS05815 PF01895 PhoU domain DN609_RS05820 PF00005 ABC transporter DN609_RS05825 PF00005 ABC transporter DN609_RS05830 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS05835 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS05840 PF12849 PBP superfamily domain DN609_RS05850 PF00005 ABC transporter DN609_RS05850 PF00664 ABC transporter transmembrane region DN609_RS05855 PF00005 ABC transporter DN609_RS05855 PF00664 ABC transporter transmembrane region DN609_RS05880 PF00266 Aminotransferase class-V DN609_RS05895 PF05491 RuvB C-terminal winged helix domain DN609_RS05895 PF05496 Holliday junction DNA helicase RuvB P-loop domain DN609_RS05895 PF17864 RuvB AAA lid domain DN609_RS05900 PF07499 RuvA, C-terminal domain DN609_RS05900 PF01330 RuvA N terminal domain DN609_RS05905 PF02075 Crossover junction endodeoxyribonuclease RuvC DN609_RS05915 PF01880 Desulfoferrodoxin DN609_RS05920 PF07733 Bacterial DNA polymerase III alpha NTPase domain DN609_RS05920 PF14579 Helix-hairpin-helix motif DN609_RS05920 PF02811 PHP domain DN609_RS05920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DN609_RS05920 PF01336 OB-fold nucleic acid binding domain DN609_RS05925 PF00580 UvrD/REP helicase N-terminal domain DN609_RS05925 PF13361 UvrD-like helicase C-terminal domain DN609_RS05940 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV DN609_RS05945 PF14602 Hexapeptide repeat of succinyl-transferase DN609_RS05945 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal DN609_RS05945 PF00132 Bacterial transferase hexapeptide (six repeats) DN609_RS05950 PF01113 Dihydrodipicolinate reductase, N-terminus DN609_RS05950 PF05173 Dihydrodipicolinate reductase, C-terminus DN609_RS05955 PF00701 Dihydrodipicolinate synthetase family DN609_RS05965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DN609_RS05965 PF03466 LysR substrate binding domain DN609_RS05970 PF02416 mttA/Hcf106 family DN609_RS05975 PF08271 TFIIB zinc-binding DN609_RS05995 PF00072 Response regulator receiver domain DN609_RS05995 PF00196 Bacterial regulatory proteins, luxR family DN609_RS06020 PF00365 Phosphofructokinase DN609_RS06025 PF02308 MgtC family DN609_RS06035 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DN609_RS06035 PF07992 Pyridine nucleotide-disulphide oxidoreductase DN609_RS06045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DN609_RS06045 PF03466 LysR substrate binding domain DN609_RS06050 PF00871 Acetokinase family DN609_RS06055 PF01515 Phosphate acetyl/butaryl transferase DN609_RS06080 PF07905 Purine catabolism regulatory protein-like family DN609_RS06080 PF13556 PucR C-terminal helix-turn-helix domain DN609_RS06100 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DN609_RS06100 PF07992 Pyridine nucleotide-disulphide oxidoreductase DN609_RS06105 PF03358 NADPH-dependent FMN reductase DN609_RS06105 PF00890 FAD binding domain DN609_RS06105 PF04205 FMN-binding domain DN609_RS06125 PF00550 Phosphopantetheine attachment site DN609_RS06130 PF01515 Phosphate acetyl/butaryl transferase DN609_RS06135 PF00871 Acetokinase family DN609_RS06145 PF00753 Metallo-beta-lactamase superfamily DN609_RS06155 PF02127 Aminopeptidase I zinc metalloprotease (M18) DN609_RS06170 PF01554 MatE DN609_RS06175 PF13407 Periplasmic binding protein domain DN609_RS06175 PF00356 Bacterial regulatory proteins, lacI family DN609_RS06185 PF00106 short chain dehydrogenase DN609_RS06195 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) DN609_RS06195 PF12733 Cadherin-like beta sandwich domain DN609_RS06205 PF03641 Possible lysine decarboxylase DN609_RS06215 PF00330 Aconitase family (aconitate hydratase) DN609_RS06215 PF00694 Aconitase C-terminal domain DN609_RS06225 PF04073 Aminoacyl-tRNA editing domain DN609_RS06230 PF02463 RecF/RecN/SMC N terminal domain DN609_RS06235 PF01513 ATP-NAD kinase DN609_RS06240 PF01728 FtsJ-like methyltransferase DN609_RS06240 PF01479 S4 domain DN609_RS06250 PF01029 NusB family DN609_RS06260 PF09285 Elongation factor P, C-terminal DN609_RS06260 PF01132 Elongation factor P (EF-P) OB domain DN609_RS06260 PF08207 Elongation factor P (EF-P) KOW-like domain DN609_RS06275 PF03613 PTS system mannose/fructose/sorbose family IID component DN609_RS06280 PF03609 PTS system sorbose-specific iic component DN609_RS06285 PF03610 PTS system fructose IIA component DN609_RS06285 PF03830 PTS system sorbose subfamily IIB component DN609_RS06290 PF00557 Metallopeptidase family M24 DN609_RS06290 PF01321 Creatinase/Prolidase N-terminal domain DN609_RS06300 PF01202 Shikimate kinase DN609_RS06305 PF13344 Haloacid dehalogenase-like hydrolase DN609_RS06310 PF02618 YceG-like family DN609_RS06315 PF03652 Holliday junction resolvase DN609_RS06320 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DN609_RS06320 PF02272 DHHA1 domain DN609_RS06320 PF01411 tRNA synthetases class II (A) DN609_RS06325 PF04616 Glycosyl hydrolases family 43 DN609_RS06330 PF01594 AI-2E family transporter DN609_RS06335 PF04542 Sigma-70 region 2 DN609_RS06335 PF04539 Sigma-70 region 3 DN609_RS06335 PF04545 Sigma-70, region 4 DN609_RS06350 PF12002 MgsA AAA+ ATPase C terminal DN609_RS06350 PF00004 ATPase family associated with various cellular activities (AAA) DN609_RS06350 PF16193 AAA C-terminal domain DN609_RS06360 PF07690 Major Facilitator Superfamily DN609_RS06365 PF02772 S-adenosylmethionine synthetase, central domain DN609_RS06365 PF02773 S-adenosylmethionine synthetase, C-terminal domain DN609_RS06365 PF00438 S-adenosylmethionine synthetase, N-terminal domain DN609_RS06370 PF00440 Bacterial regulatory proteins, tetR family DN609_RS06375 PF01061 ABC-2 type transporter DN609_RS06380 PF01061 ABC-2 type transporter DN609_RS06385 PF00749 tRNA synthetases class I (E and Q), catalytic domain DN609_RS06400 PF01470 Pyroglutamyl peptidase DN609_RS06430 PF13735 tRNA nucleotidyltransferase domain 2 putative DN609_RS06430 PF12627 Probable RNA and SrmB- binding site of polymerase A DN609_RS06430 PF01743 Poly A polymerase head domain DN609_RS06435 PF03051 Peptidase C1-like family DN609_RS06445 PF00367 phosphotransferase system, EIIB DN609_RS06445 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DN609_RS06445 PF02378 Phosphotransferase system, EIIC DN609_RS06450 PF09186 Domain of unknown function (DUF1949) DN609_RS06450 PF01205 Uncharacterized protein family UPF0029 DN609_RS06470 PF02325 YGGT family DN609_RS06475 PF04472 Cell division protein SepF DN609_RS06480 PF01168 Alanine racemase, N-terminal domain DN609_RS06490 PF12327 FtsZ family, C-terminal domain DN609_RS06490 PF00091 Tubulin/FtsZ family, GTPase domain DN609_RS06500 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DN609_RS06500 PF01565 FAD binding domain DN609_RS06505 PF01225 Mur ligase family, catalytic domain DN609_RS06505 PF08245 Mur ligase middle domain DN609_RS06505 PF02875 Mur ligase family, glutamate ligase domain DN609_RS06510 PF04101 Glycosyltransferase family 28 C-terminal domain DN609_RS06510 PF03033 Glycosyltransferase family 28 N-terminal domain DN609_RS06515 PF01098 Cell cycle protein DN609_RS06520 PF02875 Mur ligase family, glutamate ligase domain DN609_RS06520 PF08245 Mur ligase middle domain DN609_RS06525 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DN609_RS06525 PF00953 Glycosyl transferase family 4 DN609_RS06530 PF01225 Mur ligase family, catalytic domain DN609_RS06530 PF02875 Mur ligase family, glutamate ligase domain DN609_RS06530 PF08245 Mur ligase middle domain DN609_RS06535 PF00905 Penicillin binding protein transpeptidase domain DN609_RS06535 PF03717 Penicillin-binding Protein dimerisation domain DN609_RS06545 PF01795 MraW methylase family DN609_RS06550 PF02381 MraZ protein, putative antitoxin-like DN609_RS06555 PF02899 Phage integrase, N-terminal SAM-like domain DN609_RS06555 PF00589 Phage integrase family DN609_RS06560 PF00117 Glutamine amidotransferase class-I DN609_RS06560 PF06418 CTP synthase N-terminus DN609_RS06585 PF01381 Helix-turn-helix DN609_RS06595 PF00977 Histidine biosynthesis protein DN609_RS06600 PF00977 Histidine biosynthesis protein DN609_RS06605 PF00117 Glutamine amidotransferase class-I DN609_RS06610 PF00475 Imidazoleglycerol-phosphate dehydratase DN609_RS06615 PF00155 Aminotransferase class I and II DN609_RS06620 PF00815 Histidinol dehydrogenase DN609_RS06625 PF01634 ATP phosphoribosyltransferase DN609_RS06635 PF04073 Aminoacyl-tRNA editing domain DN609_RS06640 PF17760 UvrA interaction domain DN609_RS06640 PF17755 UvrA DNA-binding domain DN609_RS06640 PF00005 ABC transporter DN609_RS06655 PF12704 MacB-like periplasmic core domain DN609_RS06655 PF02687 FtsX-like permease family DN609_RS06655 PF00005 ABC transporter DN609_RS06670 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DN609_RS06685 PF03466 LysR substrate binding domain DN609_RS06685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DN609_RS06695 PF07690 Major Facilitator Superfamily DN609_RS06700 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DN609_RS06700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DN609_RS06710 PF00793 DAHP synthetase I family DN609_RS06715 PF03577 Peptidase family C69 DN609_RS06720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DN609_RS06730 PF17757 UvrB interaction domain DN609_RS06730 PF00271 Helicase conserved C-terminal domain DN609_RS06730 PF04851 Type III restriction enzyme, res subunit DN609_RS06730 PF02151 UvrB/uvrC motif DN609_RS06730 PF12344 Ultra-violet resistance protein B DN609_RS06740 PF01464 Transglycosylase SLT domain DN609_RS06740 PF01551 Peptidase family M23 DN609_RS06740 PF10145 Phage-related minor tail protein DN609_RS06745 PF01121 Dephospho-CoA kinase DN609_RS06745 PF04229 GrpB protein DN609_RS06750 PF00005 ABC transporter DN609_RS06765 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS06770 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS06775 PF04397 LytTr DNA-binding domain DN609_RS06775 PF00072 Response regulator receiver domain DN609_RS06785 PF00107 Zinc-binding dehydrogenase DN609_RS06785 PF08240 Alcohol dehydrogenase GroES-like domain DN609_RS06790 PF07687 Peptidase dimerisation domain DN609_RS06790 PF01546 Peptidase family M20/M25/M40 DN609_RS06795 PF00994 Probable molybdopterin binding domain DN609_RS06805 PF01967 MoaC family DN609_RS06810 PF06463 Molybdenum Cofactor Synthesis C DN609_RS06810 PF04055 Radical SAM superfamily DN609_RS06815 PF00005 ABC transporter DN609_RS06815 PF08402 TOBE domain DN609_RS06820 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS06830 PF13478 XdhC Rossmann domain DN609_RS06830 PF02625 XdhC and CoxI family DN609_RS06835 PF13478 XdhC Rossmann domain DN609_RS06835 PF02625 XdhC and CoxI family DN609_RS06860 PF00258 Flavodoxin DN609_RS06870 PF01566 Natural resistance-associated macrophage protein DN609_RS06890 PF07664 Ferrous iron transport protein B C terminus DN609_RS06890 PF17910 FeoB cytosolic helical domain DN609_RS06890 PF02421 Ferrous iron transport protein B DN609_RS06890 PF07670 Nucleoside recognition DN609_RS06890 PF04023 FeoA domain DN609_RS06895 PF02421 Ferrous iron transport protein B DN609_RS06895 PF07664 Ferrous iron transport protein B C terminus DN609_RS06895 PF04023 FeoA domain DN609_RS06895 PF07670 Nucleoside recognition DN609_RS06895 PF17910 FeoB cytosolic helical domain DN609_RS06910 PF01048 Phosphorylase superfamily DN609_RS06930 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DN609_RS06930 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DN609_RS06935 PF02645 Uncharacterised protein, DegV family COG1307 DN609_RS06940 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DN609_RS06940 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DN609_RS06950 PF00156 Phosphoribosyl transferase domain DN609_RS06955 PF01336 OB-fold nucleic acid binding domain DN609_RS06955 PF00152 tRNA synthetases class II (D, K and N) DN609_RS06955 PF02938 GAD domain DN609_RS06960 PF13419 Haloacid dehalogenase-like hydrolase DN609_RS06970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DN609_RS06970 PF00367 phosphotransferase system, EIIB DN609_RS06970 PF02378 Phosphotransferase system, EIIC DN609_RS06975 PF00403 Heavy-metal-associated domain DN609_RS06980 PF02583 Metal-sensitive transcriptional repressor DN609_RS06995 PF00595 PDZ domain DN609_RS07000 PF00486 Transcriptional regulatory protein, C terminal DN609_RS07005 PF00005 ABC transporter DN609_RS07010 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS07015 PF00497 Bacterial extracellular solute-binding proteins, family 3 DN609_RS07020 PF00497 Bacterial extracellular solute-binding proteins, family 3 DN609_RS07025 PF00120 Glutamine synthetase, catalytic domain DN609_RS07025 PF03951 Glutamine synthetase, beta-Grasp domain DN609_RS07035 PF00300 Histidine phosphatase superfamily (branch 1) DN609_RS07040 PF10609 NUBPL iron-transfer P-loop NTPase DN609_RS07060 PF03006 Haemolysin-III related DN609_RS07065 PF00311 Phosphoenolpyruvate carboxylase DN609_RS07075 PF00056 lactate/malate dehydrogenase, NAD binding domain DN609_RS07075 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DN609_RS07080 PF00654 Voltage gated chloride channel DN609_RS07090 PF00664 ABC transporter transmembrane region DN609_RS07090 PF00005 ABC transporter DN609_RS07095 PF00664 ABC transporter transmembrane region DN609_RS07095 PF00005 ABC transporter DN609_RS07100 PF01026 TatD related DNase DN609_RS07105 PF00398 Ribosomal RNA adenine dimethylase DN609_RS07110 PF01588 Putative tRNA binding domain DN609_RS07110 PF09334 tRNA synthetases class I (M) DN609_RS07110 PF08264 Anticodon-binding domain of tRNA DN609_RS07115 PF13493 Domain of unknown function (DUF4118) DN609_RS07115 PF00512 His Kinase A (phospho-acceptor) domain DN609_RS07115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DN609_RS07115 PF02702 Osmosensitive K+ channel His kinase sensor domain DN609_RS07120 PF00486 Transcriptional regulatory protein, C terminal DN609_RS07120 PF00072 Response regulator receiver domain DN609_RS07125 PF00689 Cation transporting ATPase, C-terminus DN609_RS07125 PF00690 Cation transporter/ATPase, N-terminus DN609_RS07130 PF02254 TrkA-N domain DN609_RS07130 PF02080 TrkA-C domain DN609_RS07135 PF02080 TrkA-C domain DN609_RS07135 PF02254 TrkA-N domain DN609_RS07145 PF00398 Ribosomal RNA adenine dimethylase DN609_RS07155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DN609_RS07155 PF03466 LysR substrate binding domain DN609_RS07160 PF01717 Cobalamin-independent synthase, Catalytic domain DN609_RS07165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DN609_RS07175 PF01242 6-pyruvoyl tetrahydropterin synthase DN609_RS07180 PF04468 PSP1 C-terminal conserved region DN609_RS07185 PF09115 DNA polymerase III, delta subunit, C terminal DN609_RS07190 PF02223 Thymidylate kinase DN609_RS07195 PF01751 Toprim domain DN609_RS07195 PF01131 DNA topoisomerase DN609_RS07195 PF13368 Topoisomerase C-terminal repeat DN609_RS07200 PF00902 Sec-independent protein translocase protein (TatC) DN609_RS07205 PF02416 mttA/Hcf106 family DN609_RS07210 PF01740 STAS domain DN609_RS07220 PF12897 Alanine-glyoxylate amino-transferase DN609_RS07230 PF01709 Transcriptional regulator DN609_RS07245 PF01791 DeoC/LacD family aldolase DN609_RS07250 PF03611 PTS system sugar-specific permease component DN609_RS07255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DN609_RS07270 PF00005 ABC transporter DN609_RS07295 PF00664 ABC transporter transmembrane region DN609_RS07295 PF00005 ABC transporter DN609_RS07300 PF00664 ABC transporter transmembrane region DN609_RS07300 PF00005 ABC transporter DN609_RS07300 PF08021 Siderophore-interacting FAD-binding domain DN609_RS07300 PF04954 Siderophore-interacting protein DN609_RS07315 PF03793 PASTA domain DN609_RS07315 PF00069 Protein kinase domain DN609_RS07365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DN609_RS07365 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DN609_RS07370 PF03780 Asp23 family, cell envelope-related function DN609_RS07385 PF06965 Na+/H+ antiporter 1 DN609_RS07395 PF02645 Uncharacterised protein, DegV family COG1307 DN609_RS07400 PF01048 Phosphorylase superfamily DN609_RS07405 PF02664 S-Ribosylhomocysteinase (LuxS) DN609_RS07410 PF00924 Mechanosensitive ion channel DN609_RS07410 PF12795 Mechanosensitive ion channel porin domain DN609_RS07410 PF12794 Mechanosensitive ion channel inner membrane domain 1 DN609_RS07415 PF13361 UvrD-like helicase C-terminal domain DN609_RS07415 PF00580 UvrD/REP helicase N-terminal domain DN609_RS07420 PF01136 Peptidase family U32 DN609_RS07420 PF16325 Peptidase family U32 C-terminal domain DN609_RS07425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DN609_RS07425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DN609_RS07450 PF07687 Peptidase dimerisation domain DN609_RS07450 PF01546 Peptidase family M20/M25/M40 DN609_RS07455 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family DN609_RS07465 PF00730 HhH-GPD superfamily base excision DNA repair protein DN609_RS07465 PF00633 Helix-hairpin-helix motif DN609_RS07485 PF00588 SpoU rRNA Methylase family DN609_RS07490 PF00009 Elongation factor Tu GTP binding domain DN609_RS07490 PF00679 Elongation factor G C-terminus DN609_RS07490 PF03764 Elongation factor G, domain IV DN609_RS07495 PF00465 Iron-containing alcohol dehydrogenase DN609_RS07500 PF00171 Aldehyde dehydrogenase family DN609_RS07505 PF00072 Response regulator receiver domain DN609_RS07505 PF00196 Bacterial regulatory proteins, luxR family DN609_RS07510 PF07730 Histidine kinase DN609_RS07515 PF00005 ABC transporter DN609_RS07530 PF07683 Cobalamin synthesis protein cobW C-terminal domain DN609_RS07530 PF02492 CobW/HypB/UreG, nucleotide-binding domain DN609_RS07540 PF04055 Radical SAM superfamily DN609_RS07545 PF01228 Glycine radical DN609_RS07545 PF02901 Pyruvate formate lyase-like DN609_RS07550 PF02590 Predicted SPOUT methyltransferase DN609_RS07560 PF01985 CRS1 / YhbY (CRM) domain DN609_RS07565 PF04445 Putative SAM-dependent methyltransferase DN609_RS07570 PF00999 Sodium/hydrogen exchanger family DN609_RS07575 PF03167 Uracil DNA glycosylase superfamily DN609_RS07580 PF07722 Peptidase C26 DN609_RS07595 PF16658 Class II release factor RF3, C-terminal domain DN609_RS07595 PF00009 Elongation factor Tu GTP binding domain DN609_RS07595 PF03144 Elongation factor Tu domain 2 DN609_RS07605 PF00180 Isocitrate/isopropylmalate dehydrogenase DN609_RS07610 PF02548 Ketopantoate hydroxymethyltransferase DN609_RS07615 PF02569 Pantoate-beta-alanine ligase DN609_RS07625 PF02261 Aspartate decarboxylase DN609_RS07630 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DN609_RS07630 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DN609_RS07635 PF00113 Enolase, C-terminal TIM barrel domain DN609_RS07635 PF03952 Enolase, N-terminal domain DN609_RS07640 PF00365 Phosphofructokinase DN609_RS07650 PF00690 Cation transporter/ATPase, N-terminus DN609_RS07650 PF00689 Cation transporting ATPase, C-terminus DN609_RS07665 PF00574 Clp protease DN609_RS07675 PF14748 Pyrroline-5-carboxylate reductase dimerisation DN609_RS07675 PF03807 NADP oxidoreductase coenzyme F420-dependent DN609_RS07680 PF00248 Aldo/keto reductase family DN609_RS07695 PF01207 Dihydrouridine synthase (Dus) DN609_RS07700 PF00892 EamA-like transporter family DN609_RS07705 PF17760 UvrA interaction domain DN609_RS07705 PF17755 UvrA DNA-binding domain DN609_RS07705 PF00005 ABC transporter DN609_RS07710 PF03313 Serine dehydratase alpha chain DN609_RS07715 PF01638 HxlR-like helix-turn-helix DN609_RS07735 PF12102 Domain of unknown function (DUF3578) DN609_RS07735 PF07728 AAA domain (dynein-related subfamily) DN609_RS07825 PF12801 4Fe-4S binding domain DN609_RS07825 PF00037 4Fe-4S binding domain DN609_RS07835 PF00486 Transcriptional regulatory protein, C terminal DN609_RS07835 PF00072 Response regulator receiver domain DN609_RS07840 PF00512 His Kinase A (phospho-acceptor) domain DN609_RS07840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DN609_RS07855 PF02899 Phage integrase, N-terminal SAM-like domain DN609_RS07855 PF00589 Phage integrase family DN609_RS07865 PF01420 Type I restriction modification DNA specificity domain DN609_RS07875 PF00005 ABC transporter DN609_RS07890 PF00486 Transcriptional regulatory protein, C terminal DN609_RS07890 PF00072 Response regulator receiver domain DN609_RS07915 PF00392 Bacterial regulatory proteins, gntR family DN609_RS07915 PF07702 UTRA domain DN609_RS07920 PF00465 Iron-containing alcohol dehydrogenase DN609_RS07925 PF00923 Transaldolase/Fructose-6-phosphate aldolase DN609_RS07930 PF03613 PTS system mannose/fructose/sorbose family IID component DN609_RS07935 PF03609 PTS system sorbose-specific iic component DN609_RS07940 PF03830 PTS system sorbose subfamily IIB component DN609_RS07945 PF01261 Xylose isomerase-like TIM barrel DN609_RS07955 PF00117 Glutamine amidotransferase class-I DN609_RS07955 PF00958 GMP synthase C terminal domain DN609_RS07955 PF02540 NAD synthase DN609_RS07960 PF03816 Cell envelope-related transcriptional attenuator domain DN609_RS07990 PF03610 PTS system fructose IIA component DN609_RS07990 PF03830 PTS system sorbose subfamily IIB component DN609_RS08000 PF01926 50S ribosome-binding GTPase DN609_RS08000 PF06071 Protein of unknown function (DUF933) DN609_RS08010 PF00118 TCP-1/cpn60 chaperonin family DN609_RS08015 PF00166 Chaperonin 10 Kd subunit DN609_RS08020 PF00795 Carbon-nitrogen hydrolase DN609_RS08020 PF02540 NAD synthase DN609_RS08030 PF07687 Peptidase dimerisation domain DN609_RS08030 PF01546 Peptidase family M20/M25/M40 DN609_RS08035 PF00005 ABC transporter DN609_RS08040 PF00528 Binding-protein-dependent transport system inner membrane component DN609_RS08045 PF00497 Bacterial extracellular solute-binding proteins, family 3 DN609_RS08050 PF01915 Glycosyl hydrolase family 3 C-terminal domain DN609_RS08050 PF14310 Fibronectin type III-like domain DN609_RS08050 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS08055 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS08055 PF01915 Glycosyl hydrolase family 3 C-terminal domain DN609_RS08055 PF14310 Fibronectin type III-like domain DN609_RS08060 PF00072 Response regulator receiver domain DN609_RS08060 PF04397 LytTr DNA-binding domain DN609_RS08070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DN609_RS08070 PF07992 Pyridine nucleotide-disulphide oxidoreductase DN609_RS08080 PF01968 Hydantoinase/oxoprolinase DN609_RS08080 PF05378 Hydantoinase/oxoprolinase N-terminal region DN609_RS08095 PF00814 Glycoprotease family DN609_RS08105 PF02915 Rubrerythrin DN609_RS08125 PF00465 Iron-containing alcohol dehydrogenase DN609_RS08130 PF00300 Histidine phosphatase superfamily (branch 1) DN609_RS08155 PF13657 HipA N-terminal domain DN609_RS08155 PF07804 HipA-like C-terminal domain DN609_RS08170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DN609_RS08170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DN609_RS08175 PF00920 Dehydratase family DN609_RS08180 PF03611 PTS system sugar-specific permease component DN609_RS08185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DN609_RS08190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DN609_RS08215 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase DN609_RS08215 PF09363 XFP C-terminal domain DN609_RS08215 PF09364 XFP N-terminal domain DN609_RS08225 PF00356 Bacterial regulatory proteins, lacI family DN609_RS08230 PF05167 Uncharacterised ACR (DUF711) DN609_RS08235 PF00106 short chain dehydrogenase DN609_RS08240 PF01565 FAD binding domain DN609_RS08240 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DN609_RS08250 PF02361 Cobalt transport protein DN609_RS08250 PF00005 ABC transporter DN609_RS08255 PF00005 ABC transporter DN609_RS08255 PF02361 Cobalt transport protein DN609_RS08260 PF00586 AIR synthase related protein, N-terminal domain DN609_RS08260 PF02769 AIR synthase related protein, C-terminal domain DN609_RS08260 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DN609_RS08280 PF03601 Conserved hypothetical protein 698 DN609_RS08295 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DN609_RS08300 PF03167 Uracil DNA glycosylase superfamily DN609_RS08305 PF01168 Alanine racemase, N-terminal domain DN609_RS08305 PF00842 Alanine racemase, C-terminal domain DN609_RS08310 PF01256 Carbohydrate kinase DN609_RS08310 PF03853 YjeF-related protein N-terminus DN609_RS08315 PF01648 4'-phosphopantetheinyl transferase superfamily DN609_RS08320 PF01380 SIS domain DN609_RS08325 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DN609_RS08325 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DN609_RS08325 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DN609_RS08325 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DN609_RS08330 PF00380 Ribosomal protein S9/S16 DN609_RS08335 PF00572 Ribosomal protein L13 DN609_RS08340 PF01734 Patatin-like phospholipase DN609_RS08360 PF01668 SmpB protein DN609_RS08370 PF17876 Cold shock domain DN609_RS08370 PF08206 Ribonuclease B OB domain DN609_RS08370 PF00575 S1 RNA binding domain DN609_RS08370 PF00773 RNB domain DN609_RS08375 PF18075 FtsX extracellular domain DN609_RS08375 PF02687 FtsX-like permease family DN609_RS08380 PF00005 ABC transporter DN609_RS08385 PF00923 Transaldolase/Fructose-6-phosphate aldolase DN609_RS08395 PF00701 Dihydrodipicolinate synthetase family DN609_RS08400 PF01380 SIS domain DN609_RS08400 PF00571 CBS domain DN609_RS08410 PF03328 HpcH/HpaI aldolase/citrate lyase family DN609_RS08415 PF03611 PTS system sugar-specific permease component DN609_RS08420 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DN609_RS08425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DN609_RS08430 PF00455 DeoR C terminal sensor domain DN609_RS08430 PF08220 DeoR-like helix-turn-helix domain DN609_RS08435 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DN609_RS08435 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DN609_RS08440 PF03462 PCRF domain DN609_RS08440 PF00472 RF-1 domain DN609_RS08445 PF07516 SecA Wing and Scaffold domain DN609_RS08445 PF07517 SecA DEAD-like domain DN609_RS08445 PF02810 SEC-C motif DN609_RS08445 PF01043 SecA preprotein cross-linking domain DN609_RS08470 PF11867 Domain of unknown function (DUF3387) DN609_RS08470 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DN609_RS08470 PF18766 SWI2/SNF2 ATPase DN609_RS08475 PF02384 N-6 DNA Methylase DN609_RS08490 PF02899 Phage integrase, N-terminal SAM-like domain DN609_RS08490 PF00589 Phage integrase family DN609_RS08500 PF01420 Type I restriction modification DNA specificity domain DN609_RS08550 PF07687 Peptidase dimerisation domain DN609_RS08550 PF01546 Peptidase family M20/M25/M40 DN609_RS08555 PF00390 Malic enzyme, N-terminal domain DN609_RS08555 PF03949 Malic enzyme, NAD binding domain DN609_RS08560 PF16363 GDP-mannose 4,6 dehydratase DN609_RS08565 PF00348 Polyprenyl synthetase DN609_RS08580 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DN609_RS08580 PF13247 4Fe-4S dicluster domain DN609_RS08580 PF07992 Pyridine nucleotide-disulphide oxidoreductase DN609_RS08585 PF00175 Oxidoreductase NAD-binding domain DN609_RS08585 PF00970 Oxidoreductase FAD-binding domain DN609_RS08585 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DN609_RS08590 PF01195 Peptidyl-tRNA hydrolase DN609_RS08595 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DN609_RS08595 PF14572 Phosphoribosyl synthetase-associated domain DN609_RS08600 PF12804 MobA-like NTP transferase domain DN609_RS08600 PF00132 Bacterial transferase hexapeptide (six repeats) DN609_RS08615 PF00535 Glycosyl transferase family 2 DN609_RS08635 PF01416 tRNA pseudouridine synthase DN609_RS08640 PF01196 Ribosomal protein L17 DN609_RS08645 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DN609_RS08645 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DN609_RS08645 PF01000 RNA polymerase Rpb3/RpoA insert domain DN609_RS08650 PF01479 S4 domain DN609_RS08650 PF00163 Ribosomal protein S4/S9 N-terminal domain DN609_RS08655 PF00411 Ribosomal protein S11 DN609_RS08660 PF00416 Ribosomal protein S13/S18 DN609_RS08665 PF00444 Ribosomal protein L36 DN609_RS08670 PF01176 Translation initiation factor 1A / IF-1 DN609_RS08675 PF00557 Metallopeptidase family M24 DN609_RS08680 PF05191 Adenylate kinase, active site lid DN609_RS08685 PF00344 SecY translocase DN609_RS08690 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DN609_RS08695 PF00327 Ribosomal protein L30p/L7e DN609_RS08700 PF03719 Ribosomal protein S5, C-terminal domain DN609_RS08700 PF00333 Ribosomal protein S5, N-terminal domain DN609_RS08705 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DN609_RS08710 PF00347 Ribosomal protein L6 DN609_RS08715 PF00410 Ribosomal protein S8 DN609_RS08720 PF00253 Ribosomal protein S14p/S29e DN609_RS08725 PF00673 ribosomal L5P family C-terminus DN609_RS08725 PF00281 Ribosomal protein L5 DN609_RS08730 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DN609_RS08730 PF00467 KOW motif DN609_RS08735 PF00238 Ribosomal protein L14p/L23e DN609_RS08740 PF00366 Ribosomal protein S17 DN609_RS08745 PF00831 Ribosomal L29 protein DN609_RS08750 PF00252 Ribosomal protein L16p/L10e DN609_RS08755 PF00189 Ribosomal protein S3, C-terminal domain DN609_RS08755 PF07650 KH domain DN609_RS08760 PF00237 Ribosomal protein L22p/L17e DN609_RS08765 PF00203 Ribosomal protein S19 DN609_RS08770 PF03947 Ribosomal Proteins L2, C-terminal domain DN609_RS08770 PF00181 Ribosomal Proteins L2, RNA binding domain DN609_RS08775 PF00276 Ribosomal protein L23 DN609_RS08780 PF00573 Ribosomal protein L4/L1 family DN609_RS08785 PF00297 Ribosomal protein L3 DN609_RS08790 PF00300 Histidine phosphatase superfamily (branch 1) DN609_RS08795 PF00338 Ribosomal protein S10p/S20e DN609_RS08800 PF03144 Elongation factor Tu domain 2 DN609_RS08800 PF14492 Elongation Factor G, domain II DN609_RS08800 PF03764 Elongation factor G, domain IV DN609_RS08800 PF00679 Elongation factor G C-terminus DN609_RS08800 PF00009 Elongation factor Tu GTP binding domain DN609_RS08805 PF00177 Ribosomal protein S7p/S5e DN609_RS08810 PF00164 Ribosomal protein S12/S23 DN609_RS08820 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DN609_RS08820 PF07992 Pyridine nucleotide-disulphide oxidoreductase DN609_RS08825 PF02492 CobW/HypB/UreG, nucleotide-binding domain DN609_RS08830 PF04998 RNA polymerase Rpb1, domain 5 DN609_RS08830 PF05000 RNA polymerase Rpb1, domain 4 DN609_RS08830 PF04983 RNA polymerase Rpb1, domain 3 DN609_RS08830 PF00623 RNA polymerase Rpb1, domain 2 DN609_RS08830 PF04997 RNA polymerase Rpb1, domain 1 DN609_RS08835 PF04560 RNA polymerase Rpb2, domain 7 DN609_RS08835 PF04563 RNA polymerase beta subunit DN609_RS08835 PF04561 RNA polymerase Rpb2, domain 2 DN609_RS08835 PF04565 RNA polymerase Rpb2, domain 3 DN609_RS08835 PF00562 RNA polymerase Rpb2, domain 6 DN609_RS08835 PF10385 RNA polymerase beta subunit external 1 domain DN609_RS08840 PF00542 Ribosomal protein L7/L12 C-terminal domain DN609_RS08840 PF16320 Ribosomal protein L7/L12 dimerisation domain DN609_RS08845 PF00466 Ribosomal protein L10 DN609_RS08850 PF00687 Ribosomal protein L1p/L10e family DN609_RS08855 PF00298 Ribosomal protein L11, RNA binding domain DN609_RS08855 PF03946 Ribosomal protein L11, N-terminal domain DN609_RS08860 PF02357 Transcription termination factor nusG DN609_RS08865 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DN609_RS08875 PF00471 Ribosomal protein L33 DN609_RS08880 PF03144 Elongation factor Tu domain 2 DN609_RS08880 PF00009 Elongation factor Tu GTP binding domain DN609_RS08880 PF03143 Elongation factor Tu C-terminal domain DN609_RS08910 PF00588 SpoU rRNA Methylase family DN609_RS08910 PF08032 RNA 2'-O ribose methyltransferase substrate binding DN609_RS08915 PF09190 DALR domain DN609_RS08915 PF01406 tRNA synthetases class I (C) catalytic domain DN609_RS08920 PF02384 N-6 DNA Methylase DN609_RS08920 PF12161 HsdM N-terminal domain DN609_RS08925 PF02542 YgbB family DN609_RS08930 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DN609_RS08935 PF02457 DisA bacterial checkpoint controller nucleotide-binding DN609_RS08935 PF00633 Helix-hairpin-helix motif DN609_RS08935 PF10635 DisA bacterial checkpoint controller linker region DN609_RS08940 PF10431 C-terminal, D2-small domain, of ClpB protein DN609_RS08940 PF02861 Clp amino terminal domain, pathogenicity island component DN609_RS08940 PF07724 AAA domain (Cdc48 subfamily) DN609_RS08940 PF17871 AAA lid domain DN609_RS08940 PF00004 ATPase family associated with various cellular activities (AAA) DN609_RS08945 PF13333 Integrase core domain DN609_RS08945 PF00665 Integrase core domain DN609_RS08945 PF13276 HTH-like domain DN609_RS08955 PF00152 tRNA synthetases class II (D, K and N) DN609_RS08955 PF01336 OB-fold nucleic acid binding domain DN609_RS08960 PF03449 Transcription elongation factor, N-terminal DN609_RS08960 PF01272 Transcription elongation factor, GreA/GreB, C-term DN609_RS08965 PF02416 mttA/Hcf106 family DN609_RS08995 PF00288 GHMP kinases N terminal domain DN609_RS08995 PF08544 GHMP kinases C terminal DN609_RS09005 PF00557 Metallopeptidase family M24 DN609_RS09005 PF01321 Creatinase/Prolidase N-terminal domain DN609_RS09010 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DN609_RS09015 PF01725 Ham1 family DN609_RS09020 PF03725 3' exoribonuclease family, domain 2 DN609_RS09020 PF01138 3' exoribonuclease family, domain 1 DN609_RS09030 PF02875 Mur ligase family, glutamate ligase domain DN609_RS09030 PF08245 Mur ligase middle domain DN609_RS09035 PF00465 Iron-containing alcohol dehydrogenase DN609_RS09050 PF02661 Fic/DOC family DN609_RS09050 PF13784 Fic/DOC family N-terminal DN609_RS09060 PF01022 Bacterial regulatory protein, arsR family DN609_RS09085 PF03819 MazG nucleotide pyrophosphohydrolase domain DN609_RS09090 PF03613 PTS system mannose/fructose/sorbose family IID component DN609_RS09095 PF03609 PTS system sorbose-specific iic component DN609_RS09110 PF00392 Bacterial regulatory proteins, gntR family DN609_RS09110 PF07702 UTRA domain DN609_RS09120 PF00270 DEAD/DEAH box helicase DN609_RS09120 PF02559 CarD-like/TRCF domain DN609_RS09120 PF17757 UvrB interaction domain DN609_RS09120 PF03461 TRCF domain DN609_RS09120 PF00271 Helicase conserved C-terminal domain DN609_RS09125 PF00483 Nucleotidyl transferase DN609_RS09130 PF00128 Alpha amylase, catalytic domain DN609_RS09130 PF02903 Alpha amylase, N-terminal ig-like domain DN609_RS09135 PF08323 Starch synthase catalytic domain DN609_RS09135 PF00534 Glycosyl transferases group 1 DN609_RS09140 PF00483 Nucleotidyl transferase DN609_RS09145 PF00483 Nucleotidyl transferase DN609_RS09150 PF00343 Carbohydrate phosphorylase DN609_RS09155 PF02806 Alpha amylase, C-terminal all-beta domain DN609_RS09155 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DN609_RS09155 PF00128 Alpha amylase, catalytic domain DN609_RS09160 PF01053 Cys/Met metabolism PLP-dependent enzyme DN609_RS09165 PF02915 Rubrerythrin DN609_RS09170 PF10576 Iron-sulfur binding domain of endonuclease III DN609_RS09170 PF00730 HhH-GPD superfamily base excision DNA repair protein DN609_RS09170 PF00633 Helix-hairpin-helix motif DN609_RS09195 PF13662 Toprim domain DN609_RS09195 PF00633 Helix-hairpin-helix motif DN609_RS09195 PF02132 RecR protein DN609_RS09200 PF02575 YbaB/EbfC DNA-binding family DN609_RS09205 PF12169 DNA polymerase III subunits gamma and tau domain III DN609_RS09210 PF14310 Fibronectin type III-like domain DN609_RS09210 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS09210 PF01915 Glycosyl hydrolase family 3 C-terminal domain DN609_RS09215 PF04397 LytTr DNA-binding domain DN609_RS09215 PF00072 Response regulator receiver domain DN609_RS09225 PF01915 Glycosyl hydrolase family 3 C-terminal domain DN609_RS09225 PF00933 Glycosyl hydrolase family 3 N terminal domain DN609_RS09225 PF14310 Fibronectin type III-like domain DN609_RS09230 PF00072 Response regulator receiver domain DN609_RS09230 PF04397 LytTr DNA-binding domain DN609_RS09245 PF09335 SNARE associated Golgi protein DN609_RS09260 PF00342 Phosphoglucose isomerase DN609_RS09270 PF00085 Thioredoxin DN609_RS09275 PF01569 PAP2 superfamily DN609_RS09285 PF04397 LytTr DNA-binding domain DN609_RS09285 PF00072 Response regulator receiver domain DN609_RS09290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DN609_RS09290 PF06580 Histidine kinase DN609_RS09290 PF13492 GAF domain DN609_RS09290 PF07694 5TMR of 5TMR-LYT DN609_RS09300 PF07685 CobB/CobQ-like glutamine amidotransferase domain DN609_RS09305 PF08245 Mur ligase middle domain DN609_RS09305 PF08353 Domain of unknown function (DUF1727) DN609_RS09310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DN609_RS09310 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DN609_RS09310 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DN609_RS09310 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DN609_RS09310 PF10371 Domain of unknown function DN609_RS09325 PF13419 Haloacid dehalogenase-like hydrolase DN609_RS09330 PF03313 Serine dehydratase alpha chain DN609_RS09335 PF01546 Peptidase family M20/M25/M40 DN609_RS09345 PF03613 PTS system mannose/fructose/sorbose family IID component DN609_RS09350 PF03830 PTS system sorbose subfamily IIB component DN609_RS09355 PF03830 PTS system sorbose subfamily IIB component DN609_RS09355 PF03610 PTS system fructose IIA component DN609_RS09370 PF00749 tRNA synthetases class I (E and Q), catalytic domain DN609_RS09410 PF04851 Type III restriction enzyme, res subunit DN609_RS09410 PF13307 Helicase C-terminal domain DN609_RS09415 PF01820 D-ala D-ala ligase N-terminus DN609_RS09415 PF07478 D-ala D-ala ligase C-terminus DN609_RS09420 PF04055 Radical SAM superfamily DN609_RS09430 PF02195 ParB-like nuclease domain DN609_RS09430 PF17762 HTH domain found in ParB protein DN609_RS09435 PF13614 AAA domain DN609_RS09440 PF02527 rRNA small subunit methyltransferase G DN609_RS09445 PF14804 Jag N-terminus DN609_RS09445 PF01424 R3H domain DN609_RS09450 PF02096 60Kd inner membrane protein DN609_RS09450 PF14849 YidC periplasmic domain DN609_RS09455 PF01809 Putative membrane protein insertion efficiency factor DN609_RS09460 PF00825 Ribonuclease P DN609_RS09465 PF00468 Ribosomal protein L34