locus-tag class description PAJ_RS00005 PF03447 Homoserine dehydrogenase, NAD binding domain PAJ_RS00005 PF00742 Homoserine dehydrogenase PAJ_RS00005 PF13840 ACT domain PAJ_RS00005 PF01842 ACT domain PAJ_RS00005 PF00696 Amino acid kinase family PAJ_RS00010 PF00288 GHMP kinases N terminal domain PAJ_RS00010 PF08544 GHMP kinases C terminal PAJ_RS00015 PF14821 Threonine synthase N terminus PAJ_RS00015 PF00291 Pyridoxal-phosphate dependent enzyme PAJ_RS00020 PF03883 Peroxide stress protein YaaA PAJ_RS00025 PF00923 Transaldolase/Fructose-6-phosphate aldolase PAJ_RS00030 PF00994 Probable molybdopterin binding domain PAJ_RS00035 PF07690 Major Facilitator Superfamily PAJ_RS00040 PF01184 GPR1/FUN34/yaaH family PAJ_RS00050 PF00226 DnaJ domain PAJ_RS00050 PF00684 DnaJ central domain PAJ_RS00050 PF01556 DnaJ C terminal domain PAJ_RS00055 PF06965 Na+/H+ antiporter 1 PAJ_RS00060 PF01649 Ribosomal protein S20 PAJ_RS00070 PF08264 Anticodon-binding domain of tRNA PAJ_RS00070 PF06827 Zinc finger found in FPG and IleRS PAJ_RS00070 PF00133 tRNA synthetases class I (I, L, M and V) PAJ_RS00075 PF01252 Signal peptidase (SPase) II PAJ_RS00080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PAJ_RS00085 PF02401 LytB protein PAJ_RS00090 PF05173 Dihydrodipicolinate reductase, C-terminus PAJ_RS00090 PF01113 Dihydrodipicolinate reductase, N-terminus PAJ_RS00095 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PAJ_RS00095 PF00117 Glutamine amidotransferase class-I PAJ_RS00100 PF02142 MGS-like domain PAJ_RS00100 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PAJ_RS00100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PAJ_RS00120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS00120 PF03466 LysR substrate binding domain PAJ_RS00130 PF00186 Dihydrofolate reductase PAJ_RS00135 PF00149 Calcineurin-like phosphoesterase PAJ_RS00140 PF04379 ApaG domain PAJ_RS00145 PF00398 Ribosomal RNA adenine dimethylase PAJ_RS00150 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PAJ_RS00155 PF09312 SurA N-terminal domain PAJ_RS00155 PF00639 PPIC-type PPIASE domain PAJ_RS00160 PF04453 LPS transport system D PAJ_RS00160 PF03968 OstA-like protein PAJ_RS00165 PF05099 Tellurite resistance protein TerB PAJ_RS00165 PF00226 DnaJ domain PAJ_RS00170 PF00849 RNA pseudouridylate synthase PAJ_RS00175 PF00271 Helicase conserved C-terminal domain PAJ_RS00175 PF12137 RNA polymerase recycling family C-terminal PAJ_RS00175 PF00176 SNF2 family N-terminal domain PAJ_RS00175 PF18339 RapA N-terminal Tudor like domain 1 PAJ_RS00175 PF18337 RapA N-terminal Tudor like domain PAJ_RS00180 PF03104 DNA polymerase family B, exonuclease domain PAJ_RS00180 PF00136 DNA polymerase family B PAJ_RS00185 PF09335 SNARE associated Golgi protein PAJ_RS00190 PF00005 ABC transporter PAJ_RS00195 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS00205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS00205 PF12793 Sugar transport-related sRNA regulator N-term PAJ_RS00210 PF07690 Major Facilitator Superfamily PAJ_RS00215 PF07690 Major Facilitator Superfamily PAJ_RS00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS00220 PF03466 LysR substrate binding domain PAJ_RS00225 PF01487 Type I 3-dehydroquinase PAJ_RS00230 PF07690 Major Facilitator Superfamily PAJ_RS00235 PF08501 Shikimate dehydrogenase substrate binding domain PAJ_RS00235 PF18317 Shikimate 5'-dehydrogenase C-terminal domain PAJ_RS00240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PAJ_RS00240 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS00245 PF00694 Aconitase C-terminal domain PAJ_RS00250 PF00330 Aconitase family (aconitate hydratase) PAJ_RS00255 PF00180 Isocitrate/isopropylmalate dehydrogenase PAJ_RS00260 PF00682 HMGL-like PAJ_RS00260 PF08502 LeuA allosteric (dimerisation) domain PAJ_RS00265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PAJ_RS00265 PF00205 Thiamine pyrophosphate enzyme, central domain PAJ_RS00265 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PAJ_RS00270 PF10369 Small subunit of acetolactate synthase PAJ_RS00275 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family PAJ_RS00275 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS00280 PF02381 MraZ protein, putative antitoxin-like PAJ_RS00285 PF01795 MraW methylase family PAJ_RS00290 PF04999 Cell division protein FtsL PAJ_RS00295 PF00905 Penicillin binding protein transpeptidase domain PAJ_RS00295 PF03717 Penicillin-binding Protein dimerisation domain PAJ_RS00300 PF01225 Mur ligase family, catalytic domain PAJ_RS00300 PF08245 Mur ligase middle domain PAJ_RS00300 PF02875 Mur ligase family, glutamate ligase domain PAJ_RS00305 PF02875 Mur ligase family, glutamate ligase domain PAJ_RS00305 PF01225 Mur ligase family, catalytic domain PAJ_RS00305 PF08245 Mur ligase middle domain PAJ_RS00310 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PAJ_RS00310 PF00953 Glycosyl transferase family 4 PAJ_RS00315 PF08245 Mur ligase middle domain PAJ_RS00315 PF02875 Mur ligase family, glutamate ligase domain PAJ_RS00320 PF01098 Cell cycle protein PAJ_RS00325 PF03033 Glycosyltransferase family 28 N-terminal domain PAJ_RS00325 PF04101 Glycosyltransferase family 28 C-terminal domain PAJ_RS00330 PF08245 Mur ligase middle domain PAJ_RS00330 PF01225 Mur ligase family, catalytic domain PAJ_RS00330 PF02875 Mur ligase family, glutamate ligase domain PAJ_RS00335 PF01820 D-ala D-ala ligase N-terminus PAJ_RS00335 PF07478 D-ala D-ala ligase C-terminus PAJ_RS00340 PF08478 POTRA domain, FtsQ-type PAJ_RS00340 PF03799 Cell division protein FtsQ PAJ_RS00345 PF02491 SHS2 domain inserted in FTSA PAJ_RS00350 PF00091 Tubulin/FtsZ family, GTPase domain PAJ_RS00350 PF12327 FtsZ family, C-terminal domain PAJ_RS00355 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PAJ_RS00360 PF06558 Secretion monitor precursor protein (SecM) PAJ_RS00365 PF07517 SecA DEAD-like domain PAJ_RS00365 PF02810 SEC-C motif PAJ_RS00365 PF07516 SecA Wing and Scaffold domain PAJ_RS00365 PF01043 SecA preprotein cross-linking domain PAJ_RS00370 PF00293 NUDIX domain PAJ_RS00375 PF03884 DNA gyrase inhibitor YacG PAJ_RS00380 PF07072 Cell division protein PAJ_RS00385 PF01121 Dephospho-CoA kinase PAJ_RS00390 PF00478 IMP dehydrogenase / GMP reductase domain PAJ_RS00395 PF00482 Type II secretion system (T2SS), protein F PAJ_RS00400 PF00437 Type II/IV secretion system protein PAJ_RS00400 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PAJ_RS00405 PF07963 Prokaryotic N-terminal methylation motif PAJ_RS00410 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PAJ_RS00410 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PAJ_RS00415 PF01510 N-acetylmuramoyl-L-alanine amidase PAJ_RS00420 PF17113 Regulatory signalling modulator protein AmpE PAJ_RS00425 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain PAJ_RS00425 PF04616 Glycosyl hydrolases family 43 PAJ_RS00435 PF00324 Amino acid permease PAJ_RS00440 PF07729 FCD domain PAJ_RS00440 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS00445 PF00456 Transketolase, thiamine diphosphate binding domain PAJ_RS00445 PF17831 Pyruvate dehydrogenase E1 component middle domain PAJ_RS00450 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PAJ_RS00450 PF02817 e3 binding domain PAJ_RS00450 PF00364 Biotin-requiring enzyme PAJ_RS00455 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS00455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PAJ_RS00460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS00460 PF03466 LysR substrate binding domain PAJ_RS00465 PF00248 Aldo/keto reductase family PAJ_RS00470 PF11791 Aconitate B N-terminal domain PAJ_RS00470 PF06434 Aconitate hydratase 2 N-terminus PAJ_RS00470 PF00330 Aconitase family (aconitate hydratase) PAJ_RS00475 PF06062 Uncharacterised protein family (UPF0231) PAJ_RS00480 PF03812 2-keto-3-deoxygluconate permease PAJ_RS00485 PF07005 Sugar-binding N-terminal domain PAJ_RS00485 PF17042 Nucleotide-binding C-terminal domain PAJ_RS00490 PF00672 HAMP domain PAJ_RS00490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS00490 PF02203 Tar ligand binding domain homologue PAJ_RS00500 PF00561 alpha/beta hydrolase fold PAJ_RS00505 PF02675 S-adenosylmethionine decarboxylase PAJ_RS00510 PF17284 Spermidine synthase tetramerisation domain PAJ_RS00515 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) PAJ_RS00520 PF10518 TAT (twin-arginine translocation) pathway signal sequence PAJ_RS00520 PF00394 Multicopper oxidase PAJ_RS00520 PF07732 Multicopper oxidase PAJ_RS00520 PF07731 Multicopper oxidase PAJ_RS00525 PF01053 Cys/Met metabolism PLP-dependent enzyme PAJ_RS00530 PF00156 Phosphoribosyl transferase domain PAJ_RS00535 PF00484 Carbonic anhydrase PAJ_RS00540 PF00005 ABC transporter PAJ_RS00545 PF01061 ABC-2 type transporter PAJ_RS00550 PF02261 Aspartate decarboxylase PAJ_RS00555 PF02569 Pantoate-beta-alanine ligase PAJ_RS00565 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PAJ_RS00570 PF01743 Poly A polymerase head domain PAJ_RS00570 PF12626 Polymerase A arginine-rich C-terminus PAJ_RS00570 PF12627 Probable RNA and SrmB- binding site of polymerase A PAJ_RS00575 PF00749 tRNA synthetases class I (E and Q), catalytic domain PAJ_RS00580 PF01258 Prokaryotic dksA/traR C4-type zinc finger PAJ_RS00585 PF17746 SfsA N-terminal OB domain PAJ_RS00585 PF03749 Sugar fermentation stimulation protein RE domain PAJ_RS00590 PF02834 LigT like Phosphoesterase PAJ_RS00595 PF00270 DEAD/DEAH box helicase PAJ_RS00595 PF04408 Helicase associated domain (HA2) PAJ_RS00595 PF00271 Helicase conserved C-terminal domain PAJ_RS00595 PF08482 ATP-dependent helicase C-terminal PAJ_RS00600 PF00912 Transglycosylase PAJ_RS00600 PF00905 Penicillin binding protein transpeptidase domain PAJ_RS00600 PF14814 Bifunctional transglycosylase second domain PAJ_RS00600 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal PAJ_RS00605 PF07715 TonB-dependent Receptor Plug Domain PAJ_RS00605 PF00593 TonB dependent receptor PAJ_RS00615 PF01497 Periplasmic binding protein PAJ_RS00620 PF01032 FecCD transport family PAJ_RS00625 PF00202 Aminotransferase class-III PAJ_RS00630 PF01521 Iron-sulphur cluster biosynthesis PAJ_RS00640 PF01497 Periplasmic binding protein PAJ_RS00645 PF01048 Phosphorylase superfamily PAJ_RS00650 PF01966 HD domain PAJ_RS00655 PF00595 PDZ domain PAJ_RS00660 PF05651 Putative sugar diacid recognition PAJ_RS00660 PF13556 PucR C-terminal helix-turn-helix domain PAJ_RS00660 PF17853 GGDEF-like domain PAJ_RS00670 PF11944 Protein of unknown function (DUF3461) PAJ_RS00675 PF14602 Hexapeptide repeat of succinyl-transferase PAJ_RS00675 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PAJ_RS00680 PF01909 Nucleotidyltransferase domain PAJ_RS00680 PF01966 HD domain PAJ_RS00680 PF08335 GlnD PII-uridylyltransferase PAJ_RS00680 PF01842 ACT domain PAJ_RS00685 PF00557 Metallopeptidase family M24 PAJ_RS00690 PF00318 Ribosomal protein S2 PAJ_RS00695 PF00889 Elongation factor TS PAJ_RS00700 PF00696 Amino acid kinase family PAJ_RS00705 PF01765 Ribosome recycling factor PAJ_RS00710 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PAJ_RS00710 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PAJ_RS00710 PF13288 DXP reductoisomerase C-terminal domain PAJ_RS00715 PF01255 Putative undecaprenyl diphosphate synthase PAJ_RS00725 PF02163 Peptidase family M50 PAJ_RS00725 PF17820 PDZ domain PAJ_RS00730 PF01103 Surface antigen PAJ_RS00730 PF07244 Surface antigen variable number repeat PAJ_RS00735 PF03938 Outer membrane protein (OmpH-like) PAJ_RS00740 PF00132 Bacterial transferase hexapeptide (six repeats) PAJ_RS00740 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PAJ_RS00745 PF07977 FabA-like domain PAJ_RS00750 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PAJ_RS00750 PF00132 Bacterial transferase hexapeptide (six repeats) PAJ_RS00755 PF02684 Lipid-A-disaccharide synthetase PAJ_RS00760 PF01351 Ribonuclease HII PAJ_RS00765 PF14579 Helix-hairpin-helix motif PAJ_RS00765 PF01336 OB-fold nucleic acid binding domain PAJ_RS00765 PF02811 PHP domain PAJ_RS00765 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PAJ_RS00765 PF07733 Bacterial DNA polymerase III alpha NTPase domain PAJ_RS00770 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PAJ_RS00775 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PAJ_RS00775 PF01276 Orn/Lys/Arg decarboxylase, major domain PAJ_RS00775 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain PAJ_RS00780 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PAJ_RS00785 PF01171 PP-loop family PAJ_RS00785 PF09179 TilS substrate binding domain PAJ_RS00785 PF11734 TilS substrate C-terminal domain PAJ_RS00790 PF00034 Cytochrome c PAJ_RS00795 PF07073 Modulator of Rho-dependent transcription termination (ROF) PAJ_RS00800 PF06786 Uncharacterised protein family (UPF0253) PAJ_RS00805 PF00472 RF-1 domain PAJ_RS00810 PF04073 Aminoacyl-tRNA editing domain PAJ_RS00810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PAJ_RS00810 PF03129 Anticodon binding domain PAJ_RS00815 PF01980 tRNA-methyltransferase O PAJ_RS00815 PF18389 TrmO C-terminal domain PAJ_RS00820 PF16358 RcsF lipoprotein PAJ_RS00825 PF03180 NLPA lipoprotein PAJ_RS00830 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS00835 PF00005 ABC transporter PAJ_RS00835 PF09383 NIL domain PAJ_RS00870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS00870 PF03466 LysR substrate binding domain PAJ_RS00875 PF03372 Endonuclease/Exonuclease/phosphatase family PAJ_RS00890 PF08241 Methyltransferase domain PAJ_RS00895 PF00075 RNase H PAJ_RS00900 PF00929 Exonuclease PAJ_RS00910 PF00923 Transaldolase/Fructose-6-phosphate aldolase PAJ_RS00915 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PAJ_RS00925 PF01177 Asp/Glu/Hydantoin racemase PAJ_RS00935 PF00596 Class II Aldolase and Adducin N-terminal domain PAJ_RS00945 PF05721 Phytanoyl-CoA dioxygenase (PhyH) PAJ_RS00950 PF00005 ABC transporter PAJ_RS00955 PF03466 LysR substrate binding domain PAJ_RS00955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS00965 PF01042 Endoribonuclease L-PSP PAJ_RS00975 PF07687 Peptidase dimerisation domain PAJ_RS00975 PF01546 Peptidase family M20/M25/M40 PAJ_RS00985 PF03466 LysR substrate binding domain PAJ_RS00985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS00995 PF01425 Amidase PAJ_RS01020 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS01025 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS01030 PF00005 ABC transporter PAJ_RS01035 PF00266 Aminotransferase class-V PAJ_RS01040 PF01546 Peptidase family M20/M25/M40 PAJ_RS01040 PF07687 Peptidase dimerisation domain PAJ_RS01050 PF00576 HIUase/Transthyretin family PAJ_RS01055 PF00141 Peroxidase PAJ_RS01060 PF00795 Carbon-nitrogen hydrolase PAJ_RS01065 PF00155 Aminotransferase class I and II PAJ_RS01070 PF00596 Class II Aldolase and Adducin N-terminal domain PAJ_RS01080 PF03079 ARD/ARD' family PAJ_RS01085 PF01008 Initiation factor 2 subunit family PAJ_RS01090 PF01636 Phosphotransferase enzyme family PAJ_RS01095 PF09317 Domain of unknown function (DUF1974) PAJ_RS01095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PAJ_RS01095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PAJ_RS01095 PF02770 Acyl-CoA dehydrogenase, middle domain PAJ_RS01100 PF13580 SIS domain PAJ_RS01105 PF13230 Glutamine amidotransferases class-II PAJ_RS01110 PF03734 L,D-transpeptidase catalytic domain PAJ_RS01115 PF00817 impB/mucB/samB family PAJ_RS01115 PF11799 impB/mucB/samB family C-terminal domain PAJ_RS01115 PF11798 IMS family HHH motif PAJ_RS01130 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS01135 PF00005 ABC transporter PAJ_RS01140 PF00291 Pyridoxal-phosphate dependent enzyme PAJ_RS01140 PF13291 ACT domain PAJ_RS01145 PF02423 Ornithine cyclodeaminase/mu-crystallin family PAJ_RS01150 PF01546 Peptidase family M20/M25/M40 PAJ_RS01150 PF07687 Peptidase dimerisation domain PAJ_RS01155 PF00156 Phosphoribosyl transferase domain PAJ_RS01160 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) PAJ_RS01165 PF07417 Sigma factor-binding transcriptional regulator Crl PAJ_RS01170 PF00267 Gram-negative porin PAJ_RS01175 PF00696 Amino acid kinase family PAJ_RS01175 PF01472 PUA domain PAJ_RS01180 PF00171 Aldehyde dehydrogenase family PAJ_RS01185 PF01381 Helix-turn-helix PAJ_RS01185 PF00717 Peptidase S24-like PAJ_RS01210 PF09008 Head binding PAJ_RS01215 PF01568 Molydopterin dinucleotide binding domain PAJ_RS01215 PF00384 Molybdopterin oxidoreductase PAJ_RS01215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PAJ_RS01220 PF12800 4Fe-4S binding domain PAJ_RS01220 PF09163 Formate dehydrogenase N, transmembrane PAJ_RS01220 PF13247 4Fe-4S dicluster domain PAJ_RS01225 PF01292 Prokaryotic cytochrome b561 PAJ_RS01240 PF00989 PAS fold PAJ_RS01240 PF02954 Bacterial regulatory protein, Fis family PAJ_RS01240 PF00158 Sigma-54 interaction domain PAJ_RS01245 PF00465 Iron-containing alcohol dehydrogenase PAJ_RS01250 PF02733 Dak1 domain PAJ_RS01255 PF02734 DAK2 domain PAJ_RS01260 PF03610 PTS system fructose IIA component PAJ_RS01260 PF05524 PEP-utilising enzyme, N-terminal PAJ_RS01260 PF00381 PTS HPr component phosphorylation site PAJ_RS01260 PF00391 PEP-utilising enzyme, mobile domain PAJ_RS01265 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PAJ_RS01265 PF08479 POTRA domain, ShlB-type PAJ_RS01265 PF17287 POTRA domain PAJ_RS01270 PF13332 Hemagglutinin repeat PAJ_RS01270 PF05860 haemagglutination activity domain PAJ_RS01270 PF04829 Pre-toxin domain with VENN motif PAJ_RS01280 PF05860 haemagglutination activity domain PAJ_RS01280 PF13332 Hemagglutinin repeat PAJ_RS01280 PF04829 Pre-toxin domain with VENN motif PAJ_RS01290 PF05594 Haemagluttinin repeat PAJ_RS01290 PF04829 Pre-toxin domain with VENN motif PAJ_RS01290 PF13332 Hemagglutinin repeat PAJ_RS01300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS01300 PF03466 LysR substrate binding domain PAJ_RS01305 PF02525 Flavodoxin-like fold PAJ_RS01310 PF00313 'Cold-shock' DNA-binding domain PAJ_RS01315 PF01584 CheW-like domain PAJ_RS01315 PF00072 Response regulator receiver domain PAJ_RS01325 PF00271 Helicase conserved C-terminal domain PAJ_RS01325 PF00270 DEAD/DEAH box helicase PAJ_RS01325 PF03880 DbpA RNA binding domain PAJ_RS01335 PF07969 Amidohydrolase family PAJ_RS01340 PF03466 LysR substrate binding domain PAJ_RS01340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS01345 PF07690 Major Facilitator Superfamily PAJ_RS01350 PF02652 L-lactate permease PAJ_RS01355 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS01355 PF07729 FCD domain PAJ_RS01360 PF01070 FMN-dependent dehydrogenase PAJ_RS01365 PF02566 OsmC-like protein PAJ_RS01380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS01385 PF02378 Phosphotransferase system, EIIC PAJ_RS01390 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit PAJ_RS01395 PF00232 Glycosyl hydrolase family 1 PAJ_RS01400 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS01430 PF10796 Sigma-S stabilisation anti-adaptor protein PAJ_RS01440 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS01440 PF14759 Reductase C-terminal PAJ_RS01445 PF14748 Pyrroline-5-carboxylate reductase dimerisation PAJ_RS01445 PF03807 NADP oxidoreductase coenzyme F420-dependent PAJ_RS01450 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PAJ_RS01455 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) PAJ_RS01460 PF01202 Shikimate kinase PAJ_RS01465 PF16362 YaiA protein PAJ_RS01470 PF06865 Pyrimidine/purine nucleoside phosphorylase PAJ_RS01475 PF04381 Putative exonuclease, RdgC PAJ_RS01480 PF00480 ROK family PAJ_RS01490 PF13476 AAA domain PAJ_RS01495 PF00149 Calcineurin-like phosphoesterase PAJ_RS01495 PF12320 Type 5 capsule protein repressor C-terminal domain PAJ_RS01500 PF00072 Response regulator receiver domain PAJ_RS01500 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS01505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS01505 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS01505 PF11808 Phosphate regulon sensor protein PhoR PAJ_RS01505 PF00989 PAS fold PAJ_RS01510 PF12849 PBP superfamily domain PAJ_RS01515 PF01717 Cobalamin-independent synthase, Catalytic domain PAJ_RS01520 PF05525 Branched-chain amino acid transport protein PAJ_RS01525 PF00324 Amino acid permease PAJ_RS01535 PF00328 Histidine phosphatase superfamily (branch 2) PAJ_RS01540 PF00459 Inositol monophosphatase family PAJ_RS01545 PF04336 Acyl carrier protein phosphodiesterase PAJ_RS01550 PF02547 Queuosine biosynthesis protein PAJ_RS01555 PF01702 Queuine tRNA-ribosyltransferase PAJ_RS01560 PF02699 Preprotein translocase subunit PAJ_RS01565 PF02355 Protein export membrane protein PAJ_RS01565 PF07549 SecD/SecF GG Motif PAJ_RS01565 PF13721 SecD export protein N-terminal TM region PAJ_RS01570 PF07549 SecD/SecF GG Motif PAJ_RS01570 PF02355 Protein export membrane protein PAJ_RS01575 PF11622 Protein of unknown function (DUF3251) PAJ_RS01580 PF03477 ATP cone domain PAJ_RS01585 PF01872 RibD C-terminal domain PAJ_RS01585 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PAJ_RS01590 PF00885 6,7-dimethyl-8-ribityllumazine synthase PAJ_RS01595 PF01029 NusB family PAJ_RS01600 PF02769 AIR synthase related protein, C-terminal domain PAJ_RS01600 PF00586 AIR synthase related protein, N-terminal domain PAJ_RS01605 PF04608 Phosphatidylglycerophosphatase A PAJ_RS01610 PF00248 Aldo/keto reductase family PAJ_RS01615 PF02779 Transketolase, pyrimidine binding domain PAJ_RS01615 PF02780 Transketolase, C-terminal domain PAJ_RS01615 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PAJ_RS01620 PF00348 Polyprenyl synthetase PAJ_RS01625 PF02609 Exonuclease VII small subunit PAJ_RS01630 PF02568 Thiamine biosynthesis protein (ThiI) PAJ_RS01630 PF02926 THUMP domain PAJ_RS01635 PF01965 DJ-1/PfpI family PAJ_RS01640 PF08546 Ketopantoate reductase PanE/ApbA C terminal PAJ_RS01640 PF02558 Ketopantoate reductase PanE/ApbA PAJ_RS01645 PF04461 Protein of unknown function (DUF520) PAJ_RS01650 PF01590 GAF domain PAJ_RS01650 PF00158 Sigma-54 interaction domain PAJ_RS01650 PF02954 Bacterial regulatory protein, Fis family PAJ_RS01655 PF00171 Aldehyde dehydrogenase family PAJ_RS01660 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS01660 PF00107 Zinc-binding dehydrogenase PAJ_RS01665 PF07690 Major Facilitator Superfamily PAJ_RS01670 PF01040 UbiA prenyltransferase family PAJ_RS01675 PF03626 Prokaryotic Cytochrome C oxidase subunit IV PAJ_RS01680 PF00510 Cytochrome c oxidase subunit III PAJ_RS01685 PF00115 Cytochrome C and Quinol oxidase polypeptide I PAJ_RS01690 PF06481 COX Aromatic Rich Motif PAJ_RS01690 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PAJ_RS01695 PF07690 Major Facilitator Superfamily PAJ_RS01700 PF03923 Uncharacterized lipoprotein PAJ_RS01700 PF08139 Prokaryotic membrane lipoprotein lipid attachment site PAJ_RS01705 PF01722 BolA-like protein PAJ_RS01710 PF05698 Bacterial trigger factor protein (TF) C-terminus PAJ_RS01710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PAJ_RS01710 PF05697 Bacterial trigger factor protein (TF) PAJ_RS01715 PF00574 Clp protease PAJ_RS01720 PF07724 AAA domain (Cdc48 subfamily) PAJ_RS01720 PF10431 C-terminal, D2-small domain, of ClpB protein PAJ_RS01720 PF06689 ClpX C4-type zinc finger PAJ_RS01725 PF05362 Lon protease (S16) C-terminal proteolytic domain PAJ_RS01725 PF00004 ATPase family associated with various cellular activities (AAA) PAJ_RS01725 PF02190 ATP-dependent protease La (LON) substrate-binding domain PAJ_RS01730 PF00216 Bacterial DNA-binding protein PAJ_RS01750 PF06508 Queuosine biosynthesis protein QueC PAJ_RS01760 PF01037 Lrp/AsnC ligand binding domain PAJ_RS01760 PF13404 AsnC-type helix-turn-helix domain PAJ_RS01765 PF00664 ABC transporter transmembrane region PAJ_RS01765 PF00005 ABC transporter PAJ_RS01770 PF00005 ABC transporter PAJ_RS01770 PF00664 ABC transporter transmembrane region PAJ_RS01775 PF00543 Nitrogen regulatory protein P-II PAJ_RS01780 PF00909 Ammonium Transporter Family PAJ_RS01790 PF09619 Type III secretion system lipoprotein chaperone (YscW) PAJ_RS01795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PAJ_RS01805 PF05321 Haemolysin expression modulating protein PAJ_RS01810 PF10757 Biofilm formation regulator YbaJ PAJ_RS01820 PF00005 ABC transporter PAJ_RS01825 PF00950 ABC 3 transport family PAJ_RS01830 PF01297 Zinc-uptake complex component A periplasmic PAJ_RS01835 PF00444 Ribosomal protein L36 PAJ_RS01840 PF01197 Ribosomal protein L31 PAJ_RS01845 PF00873 AcrB/AcrD/AcrF family PAJ_RS01850 PF00529 HlyD membrane-fusion protein of T1SS PAJ_RS01850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PAJ_RS01855 PF00440 Bacterial regulatory proteins, tetR family PAJ_RS01855 PF08361 MAATS-type transcriptional repressor, C-terminal region PAJ_RS01865 PF04304 Protein of unknown function (DUF454) PAJ_RS01870 PF00156 Phosphoribosyl transferase domain PAJ_RS01875 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PAJ_RS01875 PF12169 DNA polymerase III subunits gamma and tau domain III PAJ_RS01875 PF12170 DNA polymerase III tau subunit V interacting with alpha PAJ_RS01880 PF02575 YbaB/EbfC DNA-binding family PAJ_RS01885 PF13662 Toprim domain PAJ_RS01885 PF02132 RecR protein PAJ_RS01890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS01890 PF00183 Hsp90 protein PAJ_RS01895 PF05191 Adenylate kinase, active site lid PAJ_RS01900 PF00294 pfkB family carbohydrate kinase PAJ_RS01905 PF02254 TrkA-N domain PAJ_RS01905 PF00999 Sodium/hydrogen exchanger family PAJ_RS01910 PF02872 5'-nucleotidase, C-terminal domain PAJ_RS01910 PF00149 Calcineurin-like phosphoesterase PAJ_RS01920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS01920 PF03466 LysR substrate binding domain PAJ_RS01925 PF04073 Aminoacyl-tRNA editing domain PAJ_RS01930 PF01963 TraB family PAJ_RS01935 PF00403 Heavy-metal-associated domain PAJ_RS01950 PF13411 MerR HTH family regulatory protein PAJ_RS01955 PF01957 NfeD-like C-terminal, partner-binding PAJ_RS01960 PF16200 C-terminal region of band_7 PAJ_RS01960 PF01145 SPFH domain / Band 7 family PAJ_RS01965 PF00085 Thioredoxin PAJ_RS01970 PF00106 short chain dehydrogenase PAJ_RS01975 PF13472 GDSL-like Lipase/Acylhydrolase family PAJ_RS01980 PF00005 ABC transporter PAJ_RS01990 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PAJ_RS01990 PF02222 ATP-grasp domain PAJ_RS01995 PF00731 AIR carboxylase PAJ_RS02000 PF10011 Predicted membrane protein (DUF2254) PAJ_RS02005 PF12850 Calcineurin-like phosphoesterase superfamily domain PAJ_RS02010 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PAJ_RS02015 PF01406 tRNA synthetases class I (C) catalytic domain PAJ_RS02015 PF09190 DALR domain PAJ_RS02020 PF13476 AAA domain PAJ_RS02030 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PAJ_RS02030 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PAJ_RS02035 PF06711 Protein of unknown function (DUF1198) PAJ_RS02070 PF00535 Glycosyl transferase family 2 PAJ_RS02075 PF04138 GtrA-like protein PAJ_RS02090 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PAJ_RS02090 PF17287 POTRA domain PAJ_RS02090 PF08479 POTRA domain, ShlB-type PAJ_RS02095 PF05860 haemagglutination activity domain PAJ_RS02095 PF04829 Pre-toxin domain with VENN motif PAJ_RS02095 PF13332 Hemagglutinin repeat PAJ_RS02095 PF13018 Extended Signal Peptide of Type V secretion system PAJ_RS02150 PF01527 Transposase PAJ_RS02170 PF05488 PAAR motif PAJ_RS02170 PF05593 RHS Repeat PAJ_RS02185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS02225 PF13454 FAD-NAD(P)-binding PAJ_RS02230 PF03797 Autotransporter beta-domain PAJ_RS02240 PF00083 Sugar (and other) transporter PAJ_RS02245 PF00419 Fimbrial protein PAJ_RS02255 PF13954 PapC N-terminal domain PAJ_RS02255 PF13953 PapC C-terminal domain PAJ_RS02255 PF00577 Outer membrane usher protein PAJ_RS02260 PF02753 Pili assembly chaperone PapD, C-terminal domain PAJ_RS02260 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PAJ_RS02265 PF00419 Fimbrial protein PAJ_RS02315 PF00781 Diacylglycerol kinase catalytic domain PAJ_RS02315 PF02142 MGS-like domain PAJ_RS02335 PF01594 AI-2E family transporter PAJ_RS02340 PF01569 PAP2 superfamily PAJ_RS02345 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS02345 PF00107 Zinc-binding dehydrogenase PAJ_RS02345 PF13823 Alcohol dehydrogenase GroES-associated PAJ_RS02355 PF01497 Periplasmic binding protein PAJ_RS02370 PF00465 Iron-containing alcohol dehydrogenase PAJ_RS02375 PF02447 GntP family permease PAJ_RS02390 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP PAJ_RS02395 PF00313 'Cold-shock' DNA-binding domain PAJ_RS02405 PF00795 Carbon-nitrogen hydrolase PAJ_RS02410 PF02416 mttA/Hcf106 family PAJ_RS02415 PF04055 Radical SAM superfamily PAJ_RS02415 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family PAJ_RS02420 PF03099 Biotin/lipoate A/B protein ligase family PAJ_RS02425 PF04359 Protein of unknown function (DUF493) PAJ_RS02430 PF00768 D-alanyl-D-alanine carboxypeptidase PAJ_RS02430 PF07943 Penicillin-binding protein 5, C-terminal domain PAJ_RS02435 PF05036 Sporulation related domain PAJ_RS02435 PF03330 Lytic transglycolase PAJ_RS02440 PF01098 Cell cycle protein PAJ_RS02445 PF00905 Penicillin binding protein transpeptidase domain PAJ_RS02445 PF03717 Penicillin-binding Protein dimerisation domain PAJ_RS02450 PF02590 Predicted SPOUT methyltransferase PAJ_RS02460 PF01467 Cytidylyltransferase-like PAJ_RS02465 PF06144 DNA polymerase III, delta subunit PAJ_RS02465 PF14840 Processivity clamp loader gamma complex DNA pol III C-term PAJ_RS02470 PF04390 Lipopolysaccharide-assembly PAJ_RS02475 PF08264 Anticodon-binding domain of tRNA PAJ_RS02475 PF00133 tRNA synthetases class I (I, L, M and V) PAJ_RS02475 PF13603 Leucyl-tRNA synthetase, Domain 2 PAJ_RS02480 PF07295 Zinc-ribbon containing domain PAJ_RS02485 PF00005 ABC transporter PAJ_RS02490 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS02495 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS02500 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS02505 PF00795 Carbon-nitrogen hydrolase PAJ_RS02510 PF03471 Transporter associated domain PAJ_RS02510 PF00571 CBS domain PAJ_RS02515 PF02130 Uncharacterized protein family UPF0054 PAJ_RS02520 PF02562 PhoH-like protein PAJ_RS02525 PF00919 Uncharacterized protein family UPF0004 PAJ_RS02525 PF01938 TRAM domain PAJ_RS02525 PF04055 Radical SAM superfamily PAJ_RS02530 PF01494 FAD binding domain PAJ_RS02570 PF00733 Asparagine synthase PAJ_RS02570 PF13537 Glutamine amidotransferase domain PAJ_RS02575 PF13344 Haloacid dehalogenase-like hydrolase PAJ_RS02580 PF01047 MarR family PAJ_RS02580 PF00480 ROK family PAJ_RS02585 PF01979 Amidohydrolase family PAJ_RS02590 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PAJ_RS02595 PF00367 phosphotransferase system, EIIB PAJ_RS02595 PF02378 Phosphotransferase system, EIIC PAJ_RS02595 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PAJ_RS02600 PF00749 tRNA synthetases class I (E and Q), catalytic domain PAJ_RS02600 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PAJ_RS02610 PF01475 Ferric uptake regulator family PAJ_RS02615 PF00258 Flavodoxin PAJ_RS02620 PF01402 Ribbon-helix-helix protein, copG family PAJ_RS02625 PF12697 Alpha/beta hydrolase family PAJ_RS02630 PF03925 SeqA protein C-terminal domain PAJ_RS02630 PF17206 SeqA protein N-terminal domain PAJ_RS02635 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PAJ_RS02635 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PAJ_RS02635 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PAJ_RS02635 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PAJ_RS02640 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS02640 PF00072 Response regulator receiver domain PAJ_RS02645 PF10725 Protein of unknown function (DUF2517) PAJ_RS02650 PF08349 Protein of unknown function (DUF1722) PAJ_RS02655 PF03441 FAD binding domain of DNA photolyase PAJ_RS02655 PF00875 DNA photolyase PAJ_RS02660 PF01784 NIF3 (NGG1p interacting factor 3) PAJ_RS02665 PF02682 Carboxyltransferase domain, subdomain C and D PAJ_RS02670 PF02626 Carboxyltransferase domain, subdomain A and B PAJ_RS02675 PF03746 LamB/YcsF family PAJ_RS02690 PF01470 Pyroglutamyl peptidase PAJ_RS02695 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PAJ_RS02695 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PAJ_RS02695 PF06827 Zinc finger found in FPG and IleRS PAJ_RS02700 PF13302 Acetyltransferase (GNAT) domain PAJ_RS02705 PF00285 Citrate synthase, C-terminal domain PAJ_RS02710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PAJ_RS02715 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PAJ_RS02720 PF00890 FAD binding domain PAJ_RS02720 PF02910 Fumarate reductase flavoprotein C-term PAJ_RS02725 PF13085 2Fe-2S iron-sulfur cluster binding domain PAJ_RS02730 PF16870 2-oxoglutarate dehydrogenase C-terminal PAJ_RS02730 PF02779 Transketolase, pyrimidine binding domain PAJ_RS02730 PF00676 Dehydrogenase E1 component PAJ_RS02730 PF16078 2-oxoglutarate dehydrogenase N-terminus PAJ_RS02735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PAJ_RS02735 PF02817 e3 binding domain PAJ_RS02735 PF00364 Biotin-requiring enzyme PAJ_RS02740 PF08442 ATP-grasp domain PAJ_RS02740 PF00549 CoA-ligase PAJ_RS02745 PF00549 CoA-ligase PAJ_RS02745 PF02629 CoA binding domain PAJ_RS02750 PF01654 Cytochrome bd terminal oxidase subunit I PAJ_RS02755 PF02322 Cytochrome bd terminal oxidase subunit II PAJ_RS02760 PF08173 Membrane bound YbgT-like protein PAJ_RS02765 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) PAJ_RS02770 PF03061 Thioesterase superfamily PAJ_RS02775 PF01618 MotA/TolQ/ExbB proton channel family PAJ_RS02780 PF02472 Biopolymer transport protein ExbD/TolR PAJ_RS02785 PF06519 TolA C-terminal PAJ_RS02790 PF04052 TolB amino-terminal domain PAJ_RS02790 PF07676 WD40-like Beta Propeller Repeat PAJ_RS02795 PF00691 OmpA family PAJ_RS02800 PF16331 TolA binding protein trimerisation PAJ_RS02800 PF13174 Tetratricopeptide repeat PAJ_RS02835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS02835 PF02203 Tar ligand binding domain homologue PAJ_RS02835 PF00672 HAMP domain PAJ_RS02840 PF12833 Helix-turn-helix domain PAJ_RS02840 PF02805 Metal binding domain of Ada PAJ_RS02840 PF06029 AlkA N-terminal domain PAJ_RS02840 PF00730 HhH-GPD superfamily base excision DNA repair protein PAJ_RS02845 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PAJ_RS02845 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PAJ_RS02850 PF02445 Quinolinate synthetase A protein PAJ_RS02855 PF04973 Nicotinamide mononucleotide transporter PAJ_RS02860 PF01545 Cation efflux family PAJ_RS02865 PF01627 Hpt domain PAJ_RS02865 PF00989 PAS fold PAJ_RS02865 PF00072 Response regulator receiver domain PAJ_RS02865 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS02865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS02865 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS02870 PF00196 Bacterial regulatory proteins, luxR family PAJ_RS02870 PF00072 Response regulator receiver domain PAJ_RS02875 PF13985 YbgS-like protein PAJ_RS02880 PF00793 DAHP synthetase I family PAJ_RS02885 PF00300 Histidine phosphatase superfamily (branch 1) PAJ_RS02890 PF01263 Aldose 1-epimerase PAJ_RS02895 PF00288 GHMP kinases N terminal domain PAJ_RS02895 PF08544 GHMP kinases C terminal PAJ_RS02895 PF10509 Galactokinase galactose-binding signature PAJ_RS02900 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain PAJ_RS02900 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain PAJ_RS02905 PF00005 ABC transporter PAJ_RS02910 PF03459 TOBE domain PAJ_RS02910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS02920 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS02925 PF03459 TOBE domain PAJ_RS02925 PF00005 ABC transporter PAJ_RS02935 PF10282 Lactonase, 7-bladed beta-propeller PAJ_RS02940 PF01161 Phosphatidylethanolamine-binding protein PAJ_RS02945 PF00202 Aminotransferase class-III PAJ_RS02950 PF06968 Biotin and Thiamin Synthesis associated domain PAJ_RS02950 PF04055 Radical SAM superfamily PAJ_RS02955 PF00155 Aminotransferase class I and II PAJ_RS02960 PF08241 Methyltransferase domain PAJ_RS02970 PF00005 ABC transporter PAJ_RS02975 PF02151 UvrB/uvrC motif PAJ_RS02975 PF12344 Ultra-violet resistance protein B PAJ_RS02975 PF17757 UvrB interaction domain PAJ_RS02975 PF04851 Type III restriction enzyme, res subunit PAJ_RS02975 PF00271 Helicase conserved C-terminal domain PAJ_RS02980 PF01933 Uncharacterised protein family UPF0052 PAJ_RS02985 PF06463 Molybdenum Cofactor Synthesis C PAJ_RS02985 PF04055 Radical SAM superfamily PAJ_RS02990 PF00994 Probable molybdopterin binding domain PAJ_RS02995 PF01967 MoaC family PAJ_RS03000 PF02597 ThiS family PAJ_RS03005 PF02391 MoaE protein PAJ_RS03010 PF07759 Protein of unknown function (DUF1615) PAJ_RS03015 PF01027 Inhibitor of apoptosis-promoting Bax1 PAJ_RS03020 PF03706 Lysylphosphatidylglycerol synthase TM region PAJ_RS03025 PF13091 PLD-like domain PAJ_RS03030 PF03372 Endonuclease/Exonuclease/phosphatase family PAJ_RS03035 PF11076 Putative inner membrane protein YbhQ PAJ_RS03040 PF00271 Helicase conserved C-terminal domain PAJ_RS03040 PF00270 DEAD/DEAH box helicase PAJ_RS03045 PF01207 Dihydrouridine synthase (Dus) PAJ_RS03050 PF03976 Polyphosphate kinase 2 (PPK2) PAJ_RS03055 PF01384 Phosphate transporter family PAJ_RS03065 PF03734 L,D-transpeptidase catalytic domain PAJ_RS03065 PF17969 L,D-transpeptidase C-terminal domain PAJ_RS03070 PF00723 Glycosyl hydrolases family 15 PAJ_RS03080 PF09335 SNARE associated Golgi protein PAJ_RS03085 PF04893 Yip1 domain PAJ_RS03090 PF00768 D-alanyl-D-alanine carboxypeptidase PAJ_RS03095 PF12794 Mechanosensitive ion channel inner membrane domain 1 PAJ_RS03095 PF12795 Mechanosensitive ion channel porin domain PAJ_RS03095 PF00924 Mechanosensitive ion channel PAJ_RS03100 PF01565 FAD binding domain PAJ_RS03100 PF09330 D-lactate dehydrogenase, membrane binding PAJ_RS03105 PF01915 Glycosyl hydrolase family 3 C-terminal domain PAJ_RS03105 PF00933 Glycosyl hydrolase family 3 N terminal domain PAJ_RS03105 PF14310 Fibronectin type III-like domain PAJ_RS03115 PF02203 Tar ligand binding domain homologue PAJ_RS03115 PF00672 HAMP domain PAJ_RS03115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS03120 PF00293 NUDIX domain PAJ_RS03125 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PAJ_RS03130 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03135 PF00005 ABC transporter PAJ_RS03140 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03145 PF13411 MerR HTH family regulatory protein PAJ_RS03160 PF06733 DEAD_2 PAJ_RS03160 PF13307 Helicase C-terminal domain PAJ_RS03165 PF02885 Glycosyl transferase family, helical bundle domain PAJ_RS03170 PF07687 Peptidase dimerisation domain PAJ_RS03170 PF01546 Peptidase family M20/M25/M40 PAJ_RS03175 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS03180 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PAJ_RS03180 PF13378 Enolase C-terminal domain-like PAJ_RS03185 PF07690 Major Facilitator Superfamily PAJ_RS03190 PF01175 Urocanase Rossmann-like domain PAJ_RS03190 PF17392 Urocanase C-terminal domain PAJ_RS03190 PF17391 Urocanase N-terminal domain PAJ_RS03195 PF00221 Aromatic amino acid lyase PAJ_RS03200 PF07702 UTRA domain PAJ_RS03200 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS03205 PF05962 HutD PAJ_RS03210 PF01979 Amidohydrolase family PAJ_RS03215 PF01979 Amidohydrolase family PAJ_RS03225 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS03230 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03235 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03240 PF00005 ABC transporter PAJ_RS03245 PF00221 Aromatic amino acid lyase PAJ_RS03260 PF05971 RNA methyltransferase PAJ_RS03265 PF00005 ABC transporter PAJ_RS03270 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03275 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS03280 PF00210 Ferritin-like domain PAJ_RS03285 PF00892 EamA-like transporter family PAJ_RS03290 PF13505 Outer membrane protein beta-barrel domain PAJ_RS03300 PF02742 Iron dependent repressor, metal binding and dimerisation domain PAJ_RS03300 PF01325 Iron dependent repressor, N-terminal DNA binding domain PAJ_RS03305 PF03600 Citrate transporter PAJ_RS03310 PF00529 HlyD membrane-fusion protein of T1SS PAJ_RS03310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PAJ_RS03315 PF07690 Major Facilitator Superfamily PAJ_RS03320 PF02321 Outer membrane efflux protein PAJ_RS03325 PF00816 H-NS histone family PAJ_RS03330 PF00005 ABC transporter PAJ_RS03330 PF12848 ABC transporter PAJ_RS03335 PF00899 ThiF family PAJ_RS03340 PF03453 MoeA N-terminal region (domain I and II) PAJ_RS03340 PF03454 MoeA C-terminal region (domain IV) PAJ_RS03340 PF00994 Probable molybdopterin binding domain PAJ_RS03345 PF01112 Asparaginase PAJ_RS03350 PF00005 ABC transporter PAJ_RS03350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS03355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS03360 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03365 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03365 PF12911 N-terminal TM domain of oligopeptide transport permease C PAJ_RS03375 PF00919 Uncharacterized protein family UPF0004 PAJ_RS03375 PF18693 TRAM domain PAJ_RS03375 PF04055 Radical SAM superfamily PAJ_RS03380 PF00484 Carbonic anhydrase PAJ_RS03385 PF07995 Glucose / Sorbosone dehydrogenase PAJ_RS03395 PF00768 D-alanyl-D-alanine carboxypeptidase PAJ_RS03395 PF07943 Penicillin-binding protein 5, C-terminal domain PAJ_RS03400 PF01569 PAP2 superfamily PAJ_RS03405 PF06826 Predicted Permease Membrane Region PAJ_RS03405 PF02080 TrkA-C domain PAJ_RS03415 PF00462 Glutaredoxin PAJ_RS03420 PF07214 Protein of unknown function (DUF1418) PAJ_RS03425 PF00881 Nitroreductase family PAJ_RS03430 PF18030 RimK PreATP-grasp domain PAJ_RS03430 PF08443 RimK-like ATP-grasp domain PAJ_RS03435 PF10722 Putative bacterial sensory transduction regulator PAJ_RS03440 PF13416 Bacterial extracellular solute-binding protein PAJ_RS03445 PF08402 TOBE domain PAJ_RS03445 PF00005 ABC transporter PAJ_RS03450 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03455 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03460 PF10767 Protein of unknown function (DUF2593) PAJ_RS03465 PF05958 tRNA (Uracil-5-)-methyltransferase PAJ_RS03470 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS03475 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03485 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS03490 PF00005 ABC transporter PAJ_RS03495 PF12883 Protein of unknown function (DUF3828) PAJ_RS03500 PF01906 Putative heavy-metal-binding PAJ_RS03505 PF01510 N-acetylmuramoyl-L-alanine amidase PAJ_RS03510 PF01212 Beta-eliminating lyase PAJ_RS03515 PF00205 Thiamine pyrophosphate enzyme, central domain PAJ_RS03515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PAJ_RS03515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PAJ_RS03520 PF03956 Lysine exporter LysO PAJ_RS03525 PF11398 Protein of unknown function (DUF2813) PAJ_RS03530 PF00313 'Cold-shock' DNA-binding domain PAJ_RS03535 PF02617 ATP-dependent Clp protease adaptor protein ClpS PAJ_RS03540 PF00004 ATPase family associated with various cellular activities (AAA) PAJ_RS03540 PF10431 C-terminal, D2-small domain, of ClpB protein PAJ_RS03540 PF02861 Clp amino terminal domain, pathogenicity island component PAJ_RS03540 PF17871 AAA lid domain PAJ_RS03540 PF07724 AAA domain (Cdc48 subfamily) PAJ_RS03550 PF03588 Leucyl/phenylalanyl-tRNA protein transferase PAJ_RS03555 PF00005 ABC transporter PAJ_RS03555 PF00664 ABC transporter transmembrane region PAJ_RS03560 PF00005 ABC transporter PAJ_RS03560 PF00664 ABC transporter transmembrane region PAJ_RS03565 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS03570 PF01037 Lrp/AsnC ligand binding domain PAJ_RS03575 PF09397 Ftsk gamma domain PAJ_RS03575 PF17854 FtsK alpha domain PAJ_RS03575 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PAJ_RS03575 PF01580 FtsK/SpoIIIE family PAJ_RS03580 PF03548 Outer membrane lipoprotein carrier protein LolA PAJ_RS03585 PF00004 ATPase family associated with various cellular activities (AAA) PAJ_RS03585 PF16193 AAA C-terminal domain PAJ_RS03585 PF12002 MgsA AAA+ ATPase C terminal PAJ_RS03595 PF07690 Major Facilitator Superfamily PAJ_RS03600 PF04055 Radical SAM superfamily PAJ_RS03605 PF01228 Glycine radical PAJ_RS03605 PF02901 Pyruvate formate lyase-like PAJ_RS03610 PF01226 Formate/nitrite transporter PAJ_RS03615 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding PAJ_RS03615 PF18381 YcaO cyclodehydratase C-terminal domain PAJ_RS03620 PF00266 Aminotransferase class-V PAJ_RS03625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PAJ_RS03630 PF02224 Cytidylate kinase PAJ_RS03635 PF00575 S1 RNA binding domain PAJ_RS03640 PF00216 Bacterial DNA-binding protein PAJ_RS03645 PF03772 Competence protein PAJ_RS03645 PF00753 Metallo-beta-lactamase superfamily PAJ_RS03650 PF00005 ABC transporter PAJ_RS03650 PF00664 ABC transporter transmembrane region PAJ_RS03655 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PAJ_RS03660 PF06224 Winged helix DNA-binding domain PAJ_RS03665 PF03966 Trm112p-like protein PAJ_RS03670 PF02348 Cytidylyltransferase PAJ_RS03675 PF02698 DUF218 domain PAJ_RS03685 PF03882 MukF winged-helix domain PAJ_RS03685 PF17192 MukF middle domain PAJ_RS03685 PF17193 MukF C-terminal domain PAJ_RS03690 PF04288 MukE-like family PAJ_RS03695 PF16330 MukB hinge domain PAJ_RS03695 PF04310 MukB N-terminal PAJ_RS03700 PF01471 Putative peptidoglycan binding domain PAJ_RS03700 PF03734 L,D-transpeptidase catalytic domain PAJ_RS03705 PF05951 Bacterial protein of unknown function (DUF882) PAJ_RS03710 PF00753 Metallo-beta-lactamase superfamily PAJ_RS03715 PF00155 Aminotransferase class I and II PAJ_RS03720 PF00267 Gram-negative porin PAJ_RS03725 PF00152 tRNA synthetases class II (D, K and N) PAJ_RS03725 PF01336 OB-fold nucleic acid binding domain PAJ_RS03730 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PAJ_RS03730 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PAJ_RS03735 PF17432 Domain of unknown function (DUF3458_C) ARM repeats PAJ_RS03735 PF01433 Peptidase family M1 domain PAJ_RS03735 PF11940 Domain of unknown function (DUF3458) Ig-like fold PAJ_RS03740 PF00005 ABC transporter PAJ_RS03745 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS03750 PF00296 Luciferase-like monooxygenase PAJ_RS03755 PF09084 NMT1/THI5 like PAJ_RS03760 PF03358 NADPH-dependent FMN reductase PAJ_RS03765 PF00535 Glycosyl transferase family 2 PAJ_RS03775 PF01180 Dihydroorotate dehydrogenase PAJ_RS03780 PF07126 Cell-division protein ZapC PAJ_RS03785 PF03476 MOSC N-terminal beta barrel domain PAJ_RS03785 PF03473 MOSC domain PAJ_RS03785 PF00111 2Fe-2S iron-sulfur cluster binding domain PAJ_RS03790 PF01170 Putative RNA methylase family UPF0020 PAJ_RS03790 PF10672 S-adenosylmethionine-dependent methyltransferase PAJ_RS03790 PF02926 THUMP domain PAJ_RS03795 PF12848 ABC transporter PAJ_RS03795 PF16326 ABC transporter C-terminal domain PAJ_RS03795 PF00005 ABC transporter PAJ_RS03800 PF04403 Paraquat-inducible protein A PAJ_RS03805 PF02470 MlaD protein PAJ_RS03810 PF03886 ABC-type transport auxiliary lipoprotein component PAJ_RS03815 PF07977 FabA-like domain PAJ_RS03820 PF05362 Lon protease (S16) C-terminal proteolytic domain PAJ_RS03820 PF13654 AAA domain PAJ_RS03825 PF17414 MatP C-terminal ribbon-helix-helix domain PAJ_RS03825 PF06303 MatP N-terminal domain PAJ_RS03830 PF00691 OmpA family PAJ_RS03830 PF01389 OmpA-like transmembrane domain PAJ_RS03835 PF03846 Cell division inhibitor SulA PAJ_RS03840 PF04993 TfoX N-terminal domain PAJ_RS03840 PF04994 TfoX C-terminal domain PAJ_RS03845 PF12805 FUSC-like inner membrane protein yccS PAJ_RS03850 PF03733 Inner membrane component domain PAJ_RS03855 PF13361 UvrD-like helicase C-terminal domain PAJ_RS03855 PF12462 DNA helicase IV / RNA helicase N terminal PAJ_RS03855 PF00580 UvrD/REP helicase N-terminal domain PAJ_RS03860 PF02142 MGS-like domain PAJ_RS03865 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PAJ_RS03870 PF13380 CoA binding domain PAJ_RS03875 PF08755 Hemimethylated DNA-binding protein YccV like PAJ_RS03880 PF10672 S-adenosylmethionine-dependent methyltransferase PAJ_RS03880 PF17785 PUA-like domain PAJ_RS03885 PF00708 Acylphosphatase PAJ_RS03890 PF04358 DsrC like protein PAJ_RS03895 PF01027 Inhibitor of apoptosis-promoting Bax1 PAJ_RS03910 PF00328 Histidine phosphatase superfamily (branch 2) PAJ_RS03915 PF00171 Aldehyde dehydrogenase family PAJ_RS03920 PF13993 YccJ-like protein PAJ_RS03925 PF03358 NADPH-dependent FMN reductase PAJ_RS03935 PF00440 Bacterial regulatory proteins, tetR family PAJ_RS03935 PF08362 YcdC-like protein, C-terminal region PAJ_RS03960 PF03472 Autoinducer binding domain PAJ_RS03960 PF00196 Bacterial regulatory proteins, luxR family PAJ_RS03965 PF00765 Autoinducer synthase PAJ_RS03970 PF10769 Protein of unknown function (DUF2594) PAJ_RS03975 PF00196 Bacterial regulatory proteins, luxR family PAJ_RS03975 PF00072 Response regulator receiver domain PAJ_RS03980 PF08459 UvrC Helix-hairpin-helix N-terminal PAJ_RS03980 PF01541 GIY-YIG catalytic domain PAJ_RS03980 PF02151 UvrB/uvrC motif PAJ_RS03985 PF01066 CDP-alcohol phosphatidyltransferase PAJ_RS04075 PF06147 Protein of unknown function (DUF968) PAJ_RS04080 PF06530 Phage antitermination protein Q PAJ_RS04135 PF03354 Phage Terminase PAJ_RS04140 PF04860 Phage portal protein PAJ_RS04145 PF00574 Clp protease PAJ_RS04235 PF00817 impB/mucB/samB family PAJ_RS04235 PF13438 Domain of unknown function (DUF4113) PAJ_RS04235 PF11799 impB/mucB/samB family C-terminal domain PAJ_RS04265 PF00916 Sulfate permease family PAJ_RS04265 PF01740 STAS domain PAJ_RS04295 PF13533 Biotin-lipoyl like PAJ_RS04300 PF02321 Outer membrane efflux protein PAJ_RS04310 PF13091 PLD-like domain PAJ_RS04315 PF01757 Acyltransferase family PAJ_RS04320 PF04349 Periplasmic glucan biosynthesis protein, MdoG PAJ_RS04325 PF00535 Glycosyl transferase family 2 PAJ_RS04330 PF07119 Protein of unknown function (DUF1375) PAJ_RS04335 PF13984 MsyB protein PAJ_RS04345 PF07690 Major Facilitator Superfamily PAJ_RS04360 PF12368 Rhodanase C-terminal PAJ_RS04360 PF00581 Rhodanese-like domain PAJ_RS04360 PF17773 UPF0176 acylphosphatase like domain PAJ_RS04365 PF04264 YceI-like domain PAJ_RS04370 PF01292 Prokaryotic cytochrome b561 PAJ_RS04380 PF01266 FAD dependent oxidoreductase PAJ_RS04385 PF13991 BssS protein family PAJ_RS04395 PF06183 DinI-like family PAJ_RS04400 PF01979 Amidohydrolase family PAJ_RS04405 PF07273 Protein of unknown function (DUF1439) PAJ_RS04410 PF13302 Acetyltransferase (GNAT) domain PAJ_RS04415 PF04337 Protein of unknown function, DUF480 PAJ_RS04420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PAJ_RS04425 PF03023 Lipid II flippase MurJ PAJ_RS04430 PF02203 Tar ligand binding domain homologue PAJ_RS04430 PF00672 HAMP domain PAJ_RS04430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS04435 PF05130 FlgN protein PAJ_RS04440 PF04316 Anti-sigma-28 factor, FlgM PAJ_RS04445 PF13144 Chaperone for flagella basal body P-ring formation PAJ_RS04445 PF17656 FlgA N-terminal domain PAJ_RS04450 PF00460 Flagella basal body rod protein PAJ_RS04455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PAJ_RS04455 PF00460 Flagella basal body rod protein PAJ_RS04460 PF13860 FlgD Ig-like domain PAJ_RS04460 PF03963 Flagellar hook capping protein - N-terminal region PAJ_RS04460 PF13861 FlgD Tudor-like domain PAJ_RS04465 PF07559 Flagellar basal body protein FlaE PAJ_RS04465 PF00460 Flagella basal body rod protein PAJ_RS04465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PAJ_RS04470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PAJ_RS04470 PF00460 Flagella basal body rod protein PAJ_RS04475 PF00460 Flagella basal body rod protein PAJ_RS04475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PAJ_RS04480 PF02107 Flagellar L-ring protein PAJ_RS04485 PF02119 Flagellar P-ring protein PAJ_RS04490 PF10135 Rod binding protein PAJ_RS04490 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase PAJ_RS04495 PF00460 Flagella basal body rod protein PAJ_RS04495 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PAJ_RS04500 PF00669 Bacterial flagellin N-terminal helical region PAJ_RS04505 PF10150 Ribonuclease E/G family PAJ_RS04505 PF12111 Polyribonucleotide phosphorylase C terminal PAJ_RS04505 PF00575 S1 RNA binding domain PAJ_RS04510 PF01479 S4 domain PAJ_RS04510 PF00849 RNA pseudouridylate synthase PAJ_RS04515 PF02545 Maf-like protein PAJ_RS04520 PF02620 Large ribosomal RNA subunit accumulation protein YceD PAJ_RS04525 PF01783 Ribosomal L32p protein family PAJ_RS04530 PF02504 Fatty acid synthesis protein PAJ_RS04535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PAJ_RS04535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PAJ_RS04540 PF00698 Acyl transferase domain PAJ_RS04550 PF00550 Phosphopantetheine attachment site PAJ_RS04555 PF00109 Beta-ketoacyl synthase, N-terminal domain PAJ_RS04555 PF02801 Beta-ketoacyl synthase, C-terminal domain PAJ_RS04560 PF01063 Amino-transferase class IV PAJ_RS04565 PF02618 YceG-like family PAJ_RS04570 PF02223 Thymidylate kinase PAJ_RS04575 PF09115 DNA polymerase III, delta subunit, C terminal PAJ_RS04580 PF01026 TatD related DNase PAJ_RS04585 PF02378 Phosphotransferase system, EIIC PAJ_RS04585 PF00367 phosphotransferase system, EIIB PAJ_RS04590 PF00672 HAMP domain PAJ_RS04590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS04590 PF02203 Tar ligand binding domain homologue PAJ_RS04595 PF01230 HIT domain PAJ_RS04600 PF07233 Protein of unknown function (DUF1425) PAJ_RS04605 PF13036 Peptidoglycan-synthase activator LpoB PAJ_RS04610 PF01636 Phosphotransferase enzyme family PAJ_RS04615 PF00933 Glycosyl hydrolase family 3 N terminal domain PAJ_RS04620 PF05728 Uncharacterised protein family (UPF0227) PAJ_RS04625 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS04630 PF05433 Glycine zipper 2TM domain PAJ_RS04640 PF02627 Carboxymuconolactone decarboxylase family PAJ_RS04645 PF02559 CarD-like/TRCF domain PAJ_RS04645 PF17757 UvrB interaction domain PAJ_RS04645 PF03461 TRCF domain PAJ_RS04645 PF00271 Helicase conserved C-terminal domain PAJ_RS04645 PF00270 DEAD/DEAH box helicase PAJ_RS04650 PF02687 FtsX-like permease family PAJ_RS04650 PF12704 MacB-like periplasmic core domain PAJ_RS04660 PF12704 MacB-like periplasmic core domain PAJ_RS04660 PF02687 FtsX-like permease family PAJ_RS04665 PF02146 Sir2 family PAJ_RS04670 PF01546 Peptidase family M20/M25/M40 PAJ_RS04670 PF07687 Peptidase dimerisation domain PAJ_RS04675 PF08007 Cupin superfamily protein PAJ_RS04680 PF08918 PhoQ Sensor PAJ_RS04680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS04685 PF00072 Response regulator receiver domain PAJ_RS04685 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS04690 PF08328 Adenylosuccinate lyase C-terminal PAJ_RS04690 PF00206 Lyase PAJ_RS04695 PF04356 Protein of unknown function (DUF489) PAJ_RS04705 PF00293 NUDIX domain PAJ_RS04710 PF00849 RNA pseudouridylate synthase PAJ_RS04715 PF00180 Isocitrate/isopropylmalate dehydrogenase PAJ_RS04735 PF02753 Pili assembly chaperone PapD, C-terminal domain PAJ_RS04735 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PAJ_RS04745 PF00577 Outer membrane usher protein PAJ_RS04745 PF13953 PapC C-terminal domain PAJ_RS04745 PF13954 PapC N-terminal domain PAJ_RS04750 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PAJ_RS04750 PF02753 Pili assembly chaperone PapD, C-terminal domain PAJ_RS04775 PF01494 FAD binding domain PAJ_RS04780 PF00440 Bacterial regulatory proteins, tetR family PAJ_RS04790 PF08139 Prokaryotic membrane lipoprotein lipid attachment site PAJ_RS04790 PF02321 Outer membrane efflux protein PAJ_RS04795 PF00873 AcrB/AcrD/AcrF family PAJ_RS04800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PAJ_RS04800 PF00529 HlyD membrane-fusion protein of T1SS PAJ_RS04810 PF03825 Nucleoside H+ symporter PAJ_RS04815 PF03747 ADP-ribosylglycohydrolase PAJ_RS04820 PF00294 pfkB family carbohydrate kinase PAJ_RS04825 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS04825 PF07702 UTRA domain PAJ_RS04830 PF08946 Osmosensory transporter coiled coil PAJ_RS04830 PF00083 Sugar (and other) transporter PAJ_RS04870 PF02016 LD-carboxypeptidase N-terminal domain PAJ_RS04870 PF17676 LD-carboxypeptidase C-terminal domain PAJ_RS04875 PF01464 Transglycosylase SLT domain PAJ_RS04880 PF04198 Putative sugar-binding domain PAJ_RS04880 PF00325 Bacterial regulatory proteins, crp family PAJ_RS04885 PF00456 Transketolase, thiamine diphosphate binding domain PAJ_RS04890 PF02780 Transketolase, C-terminal domain PAJ_RS04890 PF02779 Transketolase, pyrimidine binding domain PAJ_RS04895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PAJ_RS04895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PAJ_RS04900 PF00924 Mechanosensitive ion channel PAJ_RS04910 PF04226 Transglycosylase associated protein PAJ_RS04915 PF01204 Trehalase PAJ_RS04920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAJ_RS04925 PF02811 PHP domain PAJ_RS04930 PF02613 Nitrate reductase delta subunit PAJ_RS04935 PF02515 CoA-transferase family III PAJ_RS04940 PF00892 EamA-like transporter family PAJ_RS04945 PF00117 Glutamine amidotransferase class-I PAJ_RS04945 PF00958 GMP synthase C terminal domain PAJ_RS04955 PF00171 Aldehyde dehydrogenase family PAJ_RS04965 PF00190 Cupin PAJ_RS04975 PF07859 alpha/beta hydrolase fold PAJ_RS04980 PF00232 Glycosyl hydrolase family 1 PAJ_RS04985 PF00367 phosphotransferase system, EIIB PAJ_RS04985 PF02378 Phosphotransferase system, EIIC PAJ_RS04985 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PAJ_RS04990 PF00874 PRD domain PAJ_RS04990 PF03123 CAT RNA binding domain PAJ_RS04995 PF03466 LysR substrate binding domain PAJ_RS04995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS05000 PF00361 Proton-conducting membrane transporter PAJ_RS05000 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PAJ_RS05005 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) PAJ_RS05010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PAJ_RS05035 PF02203 Tar ligand binding domain homologue PAJ_RS05035 PF00672 HAMP domain PAJ_RS05035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS05050 PF07690 Major Facilitator Superfamily PAJ_RS05060 PF01965 DJ-1/PfpI family PAJ_RS05065 PF00701 Dihydrodipicolinate synthetase family PAJ_RS05070 PF00593 TonB dependent receptor PAJ_RS05070 PF07715 TonB-dependent Receptor Plug Domain PAJ_RS05075 PF12833 Helix-turn-helix domain PAJ_RS05075 PF02311 AraC-like ligand binding domain PAJ_RS05090 PF01425 Amidase PAJ_RS05115 PF13673 Acetyltransferase (GNAT) domain PAJ_RS05135 PF02371 Transposase IS116/IS110/IS902 family PAJ_RS05135 PF01548 Transposase PAJ_RS05160 PF13289 SIR2-like domain PAJ_RS05165 PF01070 FMN-dependent dehydrogenase PAJ_RS05180 PF02567 Phenazine biosynthesis-like protein PAJ_RS05190 PF07883 Cupin domain PAJ_RS05190 PF01381 Helix-turn-helix PAJ_RS05195 PF00583 Acetyltransferase (GNAT) family PAJ_RS05210 PF00419 Fimbrial protein PAJ_RS05215 PF13953 PapC C-terminal domain PAJ_RS05215 PF13954 PapC N-terminal domain PAJ_RS05215 PF00577 Outer membrane usher protein PAJ_RS05220 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PAJ_RS05220 PF02753 Pili assembly chaperone PapD, C-terminal domain PAJ_RS05225 PF00419 Fimbrial protein PAJ_RS05230 PF00419 Fimbrial protein PAJ_RS05235 PF00563 EAL domain PAJ_RS05245 PF01075 Glycosyltransferase family 9 (heptosyltransferase) PAJ_RS05250 PF03797 Autotransporter beta-domain PAJ_RS05250 PF13018 Extended Signal Peptide of Type V secretion system PAJ_RS05250 PF16168 Adhesin of bacterial autotransporter system, probable stalk PAJ_RS05255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS05255 PF03466 LysR substrate binding domain PAJ_RS05285 PF08281 Sigma-70, region 4 PAJ_RS05285 PF04542 Sigma-70 region 2 PAJ_RS05295 PF01292 Prokaryotic cytochrome b561 PAJ_RS05300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PAJ_RS05300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAJ_RS05310 PF13520 Amino acid permease PAJ_RS05315 PF10820 Protein of unknown function (DUF2543) PAJ_RS05330 PF01844 HNH endonuclease PAJ_RS05340 PF08267 Cobalamin-independent synthase, N-terminal domain PAJ_RS05340 PF01717 Cobalamin-independent synthase, Catalytic domain PAJ_RS05355 PF00255 Glutathione peroxidase PAJ_RS05360 PF01047 MarR family PAJ_RS05365 PF02441 Flavoprotein PAJ_RS05370 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PAJ_RS05375 PF07690 Major Facilitator Superfamily PAJ_RS05390 PF00083 Sugar (and other) transporter PAJ_RS05395 PF01261 Xylose isomerase-like TIM barrel PAJ_RS05400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PAJ_RS05400 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PAJ_RS05410 PF05227 CHASE3 domain PAJ_RS05410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS05410 PF00672 HAMP domain PAJ_RS05415 PF00982 Glycosyltransferase family 20 PAJ_RS05425 PF01769 Divalent cation transporter PAJ_RS05425 PF03448 MgtE intracellular N domain PAJ_RS05425 PF00571 CBS domain PAJ_RS05440 PF00239 Resolvase, N terminal domain PAJ_RS05440 PF02796 Helix-turn-helix domain of resolvase PAJ_RS05450 PF13276 HTH-like domain PAJ_RS05450 PF13683 Integrase core domain PAJ_RS05455 PF01527 Transposase PAJ_RS05460 PF01926 50S ribosome-binding GTPase PAJ_RS05460 PF06071 Protein of unknown function (DUF933) PAJ_RS05465 PF01195 Peptidyl-tRNA hydrolase PAJ_RS05470 PF10762 Protein of unknown function (DUF2583) PAJ_RS05475 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS05475 PF17151 Periplasmic sensor domain PAJ_RS05480 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PAJ_RS05480 PF14572 Phosphoribosyl synthetase-associated domain PAJ_RS05485 PF00288 GHMP kinases N terminal domain PAJ_RS05485 PF08544 GHMP kinases C terminal PAJ_RS05490 PF03550 Outer membrane lipoprotein LolB PAJ_RS05495 PF01488 Shikimate / quinate 5-dehydrogenase PAJ_RS05495 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PAJ_RS05495 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PAJ_RS05500 PF00472 RF-1 domain PAJ_RS05500 PF03462 PCRF domain PAJ_RS05505 PF13847 Methyltransferase domain PAJ_RS05505 PF17827 PrmC N-terminal domain PAJ_RS05510 PF04247 Invasion gene expression up-regulator, SirB PAJ_RS05515 PF13369 Transglutaminase-like superfamily PAJ_RS05520 PF00793 DAHP synthetase I family PAJ_RS05525 PF01699 Sodium/calcium exchanger protein PAJ_RS05530 PF06150 ChaB PAJ_RS05535 PF04752 ChaC-like protein PAJ_RS05540 PF00069 Protein kinase domain PAJ_RS05565 PF06761 Intracellular multiplication and human macrophage-killing PAJ_RS05565 PF14331 ImcF-related N-terminal domain PAJ_RS05565 PF06744 Type VI secretion protein IcmF C-terminal PAJ_RS05570 PF00691 OmpA family PAJ_RS05570 PF13677 Membrane MotB of proton-channel complex MotA/MotB PAJ_RS05580 PF08376 Nitrate and nitrite sensing PAJ_RS05580 PF03861 ANTAR domain PAJ_RS05590 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS05595 PF00005 ABC transporter PAJ_RS05600 PF04324 BFD-like [2Fe-2S] binding domain PAJ_RS05600 PF13806 Rieske-like [2Fe-2S] domain PAJ_RS05600 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PAJ_RS05600 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PAJ_RS05600 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS05600 PF18267 Rubredoxin NAD+ reductase C-terminal domain PAJ_RS05605 PF01568 Molydopterin dinucleotide binding domain PAJ_RS05605 PF00384 Molybdopterin oxidoreductase PAJ_RS05605 PF04324 BFD-like [2Fe-2S] binding domain PAJ_RS05605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PAJ_RS05610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PAJ_RS05610 PF14824 Sirohaem biosynthesis protein central PAJ_RS05610 PF10414 Sirohaem synthase dimerisation region PAJ_RS05615 PF00455 DeoR C terminal sensor domain PAJ_RS05615 PF08220 DeoR-like helix-turn-helix domain PAJ_RS05625 PF13407 Periplasmic binding protein domain PAJ_RS05635 PF00005 ABC transporter PAJ_RS05640 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS05650 PF11924 Inverse autotransporter, beta-domain PAJ_RS05655 PF00267 Gram-negative porin PAJ_RS05660 PF00202 Aminotransferase class-III PAJ_RS05665 PF04958 Arginine N-succinyltransferase beta subunit PAJ_RS05670 PF00171 Aldehyde dehydrogenase family PAJ_RS05675 PF04996 Succinylarginine dihydrolase PAJ_RS05680 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family PAJ_RS05685 PF07813 LTXXQ motif family protein PAJ_RS05695 PF00892 EamA-like transporter family PAJ_RS05700 PF00672 HAMP domain PAJ_RS05700 PF02203 Tar ligand binding domain homologue PAJ_RS05700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS05705 PF02540 NAD synthase PAJ_RS05710 PF07690 Major Facilitator Superfamily PAJ_RS05715 PF04355 SmpA / OmlA family PAJ_RS05725 PF00375 Sodium:dicarboxylate symporter family PAJ_RS05730 PF04307 LexA-binding, inner membrane-associated putative hydrolase PAJ_RS05735 PF13419 Haloacid dehalogenase-like hydrolase PAJ_RS05740 PF14002 YniB-like protein PAJ_RS05750 PF11080 Endoribonuclease GhoS PAJ_RS05755 PF04338 Protein of unknown function, DUF481 PAJ_RS05760 PF03129 Anticodon binding domain PAJ_RS05760 PF02824 TGS domain PAJ_RS05760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PAJ_RS05760 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PAJ_RS05765 PF05198 Translation initiation factor IF-3, N-terminal domain PAJ_RS05765 PF00707 Translation initiation factor IF-3, C-terminal domain PAJ_RS05770 PF01632 Ribosomal protein L35 PAJ_RS05775 PF00453 Ribosomal protein L20 PAJ_RS05780 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PAJ_RS05780 PF01409 tRNA synthetases class II core domain (F) PAJ_RS05785 PF03483 B3/4 domain PAJ_RS05785 PF03484 tRNA synthetase B5 domain PAJ_RS05785 PF03147 Ferredoxin-fold anticodon binding domain PAJ_RS05785 PF01588 Putative tRNA binding domain PAJ_RS05785 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PAJ_RS05790 PF00216 Bacterial DNA-binding protein PAJ_RS05795 PF01032 FecCD transport family PAJ_RS05800 PF00255 Glutathione peroxidase PAJ_RS05805 PF00005 ABC transporter PAJ_RS05820 PF02696 Uncharacterized ACR, YdiU/UPF0061 family PAJ_RS05825 PF00793 DAHP synthetase I family PAJ_RS05830 PF03618 Kinase/pyrophosphorylase PAJ_RS05835 PF00391 PEP-utilising enzyme, mobile domain PAJ_RS05835 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PAJ_RS05835 PF02896 PEP-utilising enzyme, TIM barrel domain PAJ_RS05845 PF01594 AI-2E family transporter PAJ_RS05850 PF02913 FAD linked oxidases, C-terminal domain PAJ_RS05850 PF01565 FAD binding domain PAJ_RS05850 PF13183 4Fe-4S dicluster domain PAJ_RS05860 PF01521 Iron-sulphur cluster biosynthesis PAJ_RS05865 PF01458 Uncharacterized protein family (UPF0051) PAJ_RS05870 PF00005 ABC transporter PAJ_RS05875 PF01458 Uncharacterized protein family (UPF0051) PAJ_RS05880 PF00266 Aminotransferase class-V PAJ_RS05885 PF02657 Fe-S metabolism associated domain PAJ_RS05890 PF17969 L,D-transpeptidase C-terminal domain PAJ_RS05890 PF01476 LysM domain PAJ_RS05890 PF03734 L,D-transpeptidase catalytic domain PAJ_RS05895 PF04728 Lipoprotein leucine-zipper PAJ_RS05900 PF00224 Pyruvate kinase, barrel domain PAJ_RS05900 PF02887 Pyruvate kinase, alpha/beta domain PAJ_RS05920 PF01554 MatE PAJ_RS05925 PF00677 Lumazine binding domain PAJ_RS05935 PF07690 Major Facilitator Superfamily PAJ_RS05940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS05940 PF03466 LysR substrate binding domain PAJ_RS05950 PF00877 NlpC/P60 family PAJ_RS05955 PF00462 Glutaredoxin PAJ_RS05960 PF00929 Exonuclease PAJ_RS05965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PAJ_RS05970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PAJ_RS05975 PF16925 Tetracyclin repressor-like, C-terminal domain PAJ_RS05975 PF00440 Bacterial regulatory proteins, tetR family PAJ_RS05980 PF00248 Aldo/keto reductase family PAJ_RS05985 PF00080 Copper/zinc superoxide dismutase (SODC) PAJ_RS05995 PF04632 Fusaric acid resistance protein family PAJ_RS06000 PF00529 HlyD membrane-fusion protein of T1SS PAJ_RS06000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PAJ_RS06005 PF07869 Protein of unknown function (DUF1656) PAJ_RS06010 PF01047 MarR family PAJ_RS06015 PF05433 Glycine zipper 2TM domain PAJ_RS06020 PF03702 Anhydro-N-acetylmuramic acid kinase PAJ_RS06030 PF00563 EAL domain PAJ_RS06030 PF04940 Sensors of blue-light using FAD PAJ_RS06040 PF00128 Alpha amylase, catalytic domain PAJ_RS06040 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PAJ_RS06045 PF00128 Alpha amylase, catalytic domain PAJ_RS06050 PF00128 Alpha amylase, catalytic domain PAJ_RS06050 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PAJ_RS06050 PF11941 Domain of unknown function (DUF3459) PAJ_RS06055 PF06628 Catalase-related immune-responsive PAJ_RS06055 PF00199 Catalase PAJ_RS06055 PF18011 C-terminal domain found in long catalases PAJ_RS06060 PF10685 Stress-induced bacterial acidophilic repeat motif PAJ_RS06065 PF03851 UV-endonuclease UvdE PAJ_RS06075 PF10798 Biofilm development protein YmgB/AriR PAJ_RS06095 PF03466 LysR substrate binding domain PAJ_RS06095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS06110 PF00717 Peptidase S24-like PAJ_RS06115 PF11798 IMS family HHH motif PAJ_RS06115 PF13438 Domain of unknown function (DUF4113) PAJ_RS06115 PF00817 impB/mucB/samB family PAJ_RS06115 PF11799 impB/mucB/samB family C-terminal domain PAJ_RS06120 PF01965 DJ-1/PfpI family PAJ_RS06125 PF00440 Bacterial regulatory proteins, tetR family PAJ_RS06135 PF10798 Biofilm development protein YmgB/AriR PAJ_RS06145 PF06004 Bacterial protein of unknown function (DUF903) PAJ_RS06150 PF06004 Bacterial protein of unknown function (DUF903) PAJ_RS06155 PF00576 HIUase/Transthyretin family PAJ_RS06160 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme PAJ_RS06165 PF01243 Pyridoxamine 5'-phosphate oxidase PAJ_RS06165 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PAJ_RS06170 PF00579 tRNA synthetases class I (W and Y) PAJ_RS06170 PF01479 S4 domain PAJ_RS06175 PF08543 Phosphomethylpyrimidine kinase PAJ_RS06180 PF02798 Glutathione S-transferase, N-terminal domain PAJ_RS06180 PF00043 Glutathione S-transferase, C-terminal domain PAJ_RS06185 PF00854 POT family PAJ_RS06190 PF06418 CTP synthase N-terminus PAJ_RS06190 PF00117 Glutamine amidotransferase class-I PAJ_RS06195 PF10576 Iron-sulfur binding domain of endonuclease III PAJ_RS06195 PF00633 Helix-hairpin-helix motif PAJ_RS06195 PF00730 HhH-GPD superfamily base excision DNA repair protein PAJ_RS06200 PF02508 Rnf-Nqr subunit, membrane protein PAJ_RS06205 PF04205 FMN-binding domain PAJ_RS06210 PF03116 NQR2, RnfD, RnfE family PAJ_RS06215 PF12838 4Fe-4S dicluster domain PAJ_RS06215 PF10531 SLBB domain PAJ_RS06215 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PAJ_RS06215 PF13375 RnfC Barrel sandwich hybrid domain PAJ_RS06220 PF04060 Putative Fe-S cluster PAJ_RS06225 PF02508 Rnf-Nqr subunit, membrane protein PAJ_RS06230 PF10754 Protein of unknown function (DUF2569) PAJ_RS06235 PF05321 Haemolysin expression modulating protein PAJ_RS06240 PF13407 Periplasmic binding protein domain PAJ_RS06245 PF00005 ABC transporter PAJ_RS06250 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS06255 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS06260 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS06260 PF00072 Response regulator receiver domain PAJ_RS06300 PF01510 N-acetylmuramoyl-L-alanine amidase PAJ_RS06305 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PAJ_RS06310 PF12852 Cupin PAJ_RS06310 PF12833 Helix-turn-helix domain PAJ_RS06320 PF00924 Mechanosensitive ion channel PAJ_RS06335 PF10996 Beta-Casp domain PAJ_RS06335 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PAJ_RS06335 PF00753 Metallo-beta-lactamase superfamily PAJ_RS06345 PF01037 Lrp/AsnC ligand binding domain PAJ_RS06350 PF00202 Aminotransferase class-III PAJ_RS06365 PF00313 'Cold-shock' DNA-binding domain PAJ_RS06370 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) PAJ_RS06380 PF00561 alpha/beta hydrolase fold PAJ_RS06385 PF00849 RNA pseudouridylate synthase PAJ_RS06390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS06390 PF03466 LysR substrate binding domain PAJ_RS06405 PF02610 L-arabinose isomerase PAJ_RS06405 PF11762 L-arabinose isomerase C-terminal domain PAJ_RS06410 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PAJ_RS06415 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family PAJ_RS06420 PF00005 ABC transporter PAJ_RS06425 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS06430 PF02311 AraC-like ligand binding domain PAJ_RS06430 PF12833 Helix-turn-helix domain PAJ_RS06435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PAJ_RS06435 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PAJ_RS06440 PF00962 Adenosine/AMP deaminase PAJ_RS06450 PF01238 Phosphomannose isomerase type I PAJ_RS06455 PF10415 Fumarase C C-terminus PAJ_RS06455 PF00206 Lyase PAJ_RS06460 PF05472 DNA replication terminus site-binding protein (Ter protein) PAJ_RS06480 PF00873 AcrB/AcrD/AcrF family PAJ_RS06485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PAJ_RS06485 PF00529 HlyD membrane-fusion protein of T1SS PAJ_RS06490 PF12833 Helix-turn-helix domain PAJ_RS06495 PF00545 ribonuclease PAJ_RS06520 PF03594 Benzoate membrane transport protein PAJ_RS06525 PF01381 Helix-turn-helix PAJ_RS06525 PF07883 Cupin domain PAJ_RS06530 PF00857 Isochorismatase family PAJ_RS06535 PF00593 TonB dependent receptor PAJ_RS06535 PF07715 TonB-dependent Receptor Plug Domain PAJ_RS06540 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PAJ_RS06540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PAJ_RS06550 PF08502 LeuA allosteric (dimerisation) domain PAJ_RS06550 PF00682 HMGL-like PAJ_RS06555 PF01244 Membrane dipeptidase (Peptidase family M19) PAJ_RS06560 PF12706 Beta-lactamase superfamily domain PAJ_RS06565 PF03070 TENA/THI-4/PQQC family PAJ_RS06570 PF05402 Coenzyme PQQ synthesis protein D (PqqD) PAJ_RS06575 PF13186 Iron-sulfur cluster-binding domain PAJ_RS06575 PF04055 Radical SAM superfamily PAJ_RS06580 PF00675 Insulinase (Peptidase family M16) PAJ_RS06585 PF04264 YceI-like domain PAJ_RS06590 PF00365 Phosphofructokinase PAJ_RS06600 PF03611 PTS system sugar-specific permease component PAJ_RS06605 PF01116 Fructose-bisphosphate aldolase class-II PAJ_RS06635 PF07995 Glucose / Sorbosone dehydrogenase PAJ_RS06640 PF00132 Bacterial transferase hexapeptide (six repeats) PAJ_RS06645 PF06628 Catalase-related immune-responsive PAJ_RS06645 PF00199 Catalase PAJ_RS06660 PF13407 Periplasmic binding protein domain PAJ_RS06665 PF00005 ABC transporter PAJ_RS06670 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS06675 PF01418 Helix-turn-helix domain, rpiR family PAJ_RS06675 PF01380 SIS domain PAJ_RS06680 PF00294 pfkB family carbohydrate kinase PAJ_RS06685 PF00107 Zinc-binding dehydrogenase PAJ_RS06685 PF16884 N-terminal domain of oxidoreductase PAJ_RS06690 PF01569 PAP2 superfamily PAJ_RS06695 PF02203 Tar ligand binding domain homologue PAJ_RS06695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS06695 PF00672 HAMP domain PAJ_RS06700 PF00072 Response regulator receiver domain PAJ_RS06700 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS06705 PF03649 Uncharacterised protein family (UPF0014) PAJ_RS06710 PF00005 ABC transporter PAJ_RS06715 PF12464 Maltose acetyltransferase PAJ_RS06715 PF14602 Hexapeptide repeat of succinyl-transferase PAJ_RS06730 PF03466 LysR substrate binding domain PAJ_RS06735 PF00106 short chain dehydrogenase PAJ_RS06740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS06740 PF03466 LysR substrate binding domain PAJ_RS06745 PF07670 Nucleoside recognition PAJ_RS06750 PF07670 Nucleoside recognition PAJ_RS06755 PF07687 Peptidase dimerisation domain PAJ_RS06755 PF01546 Peptidase family M20/M25/M40 PAJ_RS06760 PF03960 ArsC family PAJ_RS06765 PF02040 Arsenical pump membrane protein PAJ_RS06770 PF01022 Bacterial regulatory protein, arsR family PAJ_RS06800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PAJ_RS06810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PAJ_RS06820 PF00245 Alkaline phosphatase PAJ_RS06835 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS06840 PF14785 Maltose transport system permease protein MalF P2 domain PAJ_RS06840 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS06845 PF01547 Bacterial extracellular solute-binding protein PAJ_RS06850 PF00005 ABC transporter PAJ_RS06850 PF17912 MalK OB fold domain PAJ_RS06855 PF02264 LamB porin PAJ_RS06860 PF07148 Maltose operon periplasmic protein precursor (MalM) PAJ_RS06875 PF02446 4-alpha-glucanotransferase PAJ_RS06880 PF00343 Carbohydrate phosphorylase PAJ_RS06885 PF00196 Bacterial regulatory proteins, luxR family PAJ_RS06885 PF17874 MalT-like TPR region PAJ_RS06890 PF07690 Major Facilitator Superfamily PAJ_RS06900 PF02638 Glycosyl hydrolase-like 10 PAJ_RS06905 PF00384 Molybdopterin oxidoreductase PAJ_RS06910 PF02308 MgtC family PAJ_RS06925 PF01527 Transposase PAJ_RS06930 PF13276 HTH-like domain PAJ_RS06930 PF13683 Integrase core domain PAJ_RS06970 PF00664 ABC transporter transmembrane region PAJ_RS06970 PF00005 ABC transporter PAJ_RS06970 PF03412 Peptidase C39 family PAJ_RS06985 PF00877 NlpC/P60 family PAJ_RS06995 PF00293 NUDIX domain PAJ_RS07005 PF07683 Cobalamin synthesis protein cobW C-terminal domain PAJ_RS07005 PF02492 CobW/HypB/UreG, nucleotide-binding domain PAJ_RS07030 PF01522 Polysaccharide deacetylase PAJ_RS07035 PF01425 Amidase PAJ_RS07045 PF01435 Peptidase family M48 PAJ_RS07055 PF01266 FAD dependent oxidoreductase PAJ_RS07060 PF00171 Aldehyde dehydrogenase family PAJ_RS07065 PF01168 Alanine racemase, N-terminal domain PAJ_RS07065 PF14031 Putative serine dehydratase domain PAJ_RS07070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS07070 PF03466 LysR substrate binding domain PAJ_RS07080 PF02469 Fasciclin domain PAJ_RS07095 PF02203 Tar ligand binding domain homologue PAJ_RS07095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS07095 PF00672 HAMP domain PAJ_RS07100 PF02705 K+ potassium transporter PAJ_RS07110 PF13657 HipA N-terminal domain PAJ_RS07110 PF07804 HipA-like C-terminal domain PAJ_RS07115 PF01381 Helix-turn-helix PAJ_RS07135 PF00765 Autoinducer synthase PAJ_RS07140 PF00196 Bacterial regulatory proteins, luxR family PAJ_RS07140 PF03472 Autoinducer binding domain PAJ_RS07150 PF00144 Beta-lactamase PAJ_RS07165 PF01494 FAD binding domain PAJ_RS07170 PF01432 Peptidase family M3 PAJ_RS07180 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PAJ_RS07180 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PAJ_RS07185 PF03450 CO dehydrogenase flavoprotein C-terminal domain PAJ_RS07185 PF00941 FAD binding domain in molybdopterin dehydrogenase PAJ_RS07190 PF01979 Amidohydrolase family PAJ_RS07195 PF00106 short chain dehydrogenase PAJ_RS07200 PF02694 Uncharacterised BCR, YnfA/UPF0060 family PAJ_RS07205 PF06932 Protein of unknown function (DUF1283) PAJ_RS07210 PF06649 Protein of unknown function (DUF1161) PAJ_RS07215 PF07690 Major Facilitator Superfamily PAJ_RS07220 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS07230 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS07235 PF00005 ABC transporter PAJ_RS07235 PF00571 CBS domain PAJ_RS07245 PF00480 ROK family PAJ_RS07250 PF03466 LysR substrate binding domain PAJ_RS07250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS07255 PF07690 Major Facilitator Superfamily PAJ_RS07265 PF01292 Prokaryotic cytochrome b561 PAJ_RS07270 PF07690 Major Facilitator Superfamily PAJ_RS07280 PF01258 Prokaryotic dksA/traR C4-type zinc finger PAJ_RS07285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS07290 PF07687 Peptidase dimerisation domain PAJ_RS07290 PF01546 Peptidase family M20/M25/M40 PAJ_RS07295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS07295 PF00672 HAMP domain PAJ_RS07295 PF02203 Tar ligand binding domain homologue PAJ_RS07300 PF00135 Carboxylesterase family PAJ_RS07310 PF07063 Domain of unknown function (DUF1338) PAJ_RS07315 PF07690 Major Facilitator Superfamily PAJ_RS07320 PF03466 LysR substrate binding domain PAJ_RS07320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS07325 PF01713 Smr domain PAJ_RS07330 PF00325 Bacterial regulatory proteins, crp family PAJ_RS07330 PF00027 Cyclic nucleotide-binding domain PAJ_RS07335 PF00582 Universal stress protein family PAJ_RS07340 PF02233 NAD(P) transhydrogenase beta subunit PAJ_RS07345 PF01262 Alanine dehydrogenase/PNT, C-terminal domain PAJ_RS07345 PF05222 Alanine dehydrogenase/PNT, N-terminal domain PAJ_RS07345 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PAJ_RS07350 PF07338 Protein of unknown function (DUF1471) PAJ_RS07355 PF13520 Amino acid permease PAJ_RS07365 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS07365 PF00072 Response regulator receiver domain PAJ_RS07370 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS07370 PF00672 HAMP domain PAJ_RS07370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS07375 PF02074 Carboxypeptidase Taq (M32) metallopeptidase PAJ_RS07385 PF00089 Trypsin PAJ_RS07390 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PAJ_RS07390 PF04408 Helicase associated domain (HA2) PAJ_RS07390 PF00271 Helicase conserved C-terminal domain PAJ_RS07390 PF00270 DEAD/DEAH box helicase PAJ_RS07390 PF11898 Domain of unknown function (DUF3418) PAJ_RS07395 PF02525 Flavodoxin-like fold PAJ_RS07400 PF07027 Protein of unknown function (DUF1318) PAJ_RS07405 PF13617 YnbE-like lipoprotein PAJ_RS07410 PF11739 Dicarboxylate transport PAJ_RS07415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAJ_RS07415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PAJ_RS07425 PF02308 MgtC family PAJ_RS07430 PF01171 PP-loop family PAJ_RS07435 PF01544 CorA-like Mg2+ transporter protein PAJ_RS07440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS07445 PF00246 Zinc carboxypeptidase PAJ_RS07450 PF13378 Enolase C-terminal domain-like PAJ_RS07450 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PAJ_RS07455 PF08534 Redoxin PAJ_RS07460 PF18024 Helix-turn-helix domain PAJ_RS07460 PF00158 Sigma-54 interaction domain PAJ_RS07465 PF05128 Domain of unknown function (DUF697) PAJ_RS07470 PF04317 YcjX-like family, DUF463 PAJ_RS07475 PF09584 Phage shock protein PspD (Phageshock_PspD) PAJ_RS07480 PF04024 PspC domain PAJ_RS07485 PF06667 Phage shock protein B PAJ_RS07490 PF04012 PspA/IM30 family PAJ_RS07495 PF02954 Bacterial regulatory protein, Fis family PAJ_RS07495 PF00158 Sigma-54 interaction domain PAJ_RS07505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS07510 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS07515 PF12911 N-terminal TM domain of oligopeptide transport permease C PAJ_RS07515 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS07520 PF00005 ABC transporter PAJ_RS07520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS07525 PF00005 ABC transporter PAJ_RS07540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS07540 PF03466 LysR substrate binding domain PAJ_RS07545 PF00367 phosphotransferase system, EIIB PAJ_RS07545 PF02378 Phosphotransferase system, EIIC PAJ_RS07550 PF00384 Molybdopterin oxidoreductase PAJ_RS07555 PF17876 Cold shock domain PAJ_RS07555 PF00575 S1 RNA binding domain PAJ_RS07555 PF00773 RNB domain PAJ_RS07555 PF08206 Ribonuclease B OB domain PAJ_RS07560 PF13722 5TM C-terminal transporter carbon starvation CstA PAJ_RS07560 PF02554 Carbon starvation protein CstA PAJ_RS07570 PF00563 EAL domain PAJ_RS07570 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS07570 PF13426 PAS domain PAJ_RS07575 PF00378 Enoyl-CoA hydratase/isomerase PAJ_RS07580 PF00596 Class II Aldolase and Adducin N-terminal domain PAJ_RS07590 PF05433 Glycine zipper 2TM domain PAJ_RS07595 PF01253 Translation initiation factor SUI1 PAJ_RS07600 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PAJ_RS07605 PF18073 Rubredoxin metal binding domain PAJ_RS07610 PF06305 Lipopolysaccharide assembly protein A domain PAJ_RS07615 PF01569 PAP2 superfamily PAJ_RS07620 PF00925 GTP cyclohydrolase II PAJ_RS07625 PF00694 Aconitase C-terminal domain PAJ_RS07625 PF00330 Aconitase family (aconitate hydratase) PAJ_RS07635 PF03466 LysR substrate binding domain PAJ_RS07635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS07640 PF01751 Toprim domain PAJ_RS07640 PF08272 Topoisomerase I zinc-ribbon-like PAJ_RS07640 PF01396 Topoisomerase DNA binding C4 zinc finger PAJ_RS07640 PF01131 DNA topoisomerase PAJ_RS07645 PF10692 Protein of unknown function (DUF2498) PAJ_RS07650 PF01343 Peptidase family S49 PAJ_RS07650 PF08496 Peptidase family S49 N-terminal PAJ_RS07655 PF00106 short chain dehydrogenase PAJ_RS07660 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PAJ_RS07665 PF03600 Citrate transporter PAJ_RS07670 PF01479 S4 domain PAJ_RS07670 PF00849 RNA pseudouridylate synthase PAJ_RS07685 PF01300 Telomere recombination PAJ_RS07690 PF02811 PHP domain PAJ_RS07695 PF04715 Anthranilate synthase component I, N terminal region PAJ_RS07695 PF00425 chorismate binding enzyme PAJ_RS07700 PF02885 Glycosyl transferase family, helical bundle domain PAJ_RS07700 PF00117 Glutamine amidotransferase class-I PAJ_RS07700 PF00591 Glycosyl transferase family, a/b domain PAJ_RS07705 PF00591 Glycosyl transferase family, a/b domain PAJ_RS07705 PF02885 Glycosyl transferase family, helical bundle domain PAJ_RS07710 PF00218 Indole-3-glycerol phosphate synthase PAJ_RS07710 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PAJ_RS07715 PF00291 Pyridoxal-phosphate dependent enzyme PAJ_RS07720 PF00290 Tryptophan synthase alpha chain PAJ_RS07730 PF03922 OmpW family PAJ_RS07735 PF03692 Putative zinc- or iron-chelating domain PAJ_RS07745 PF04279 Intracellular septation protein A PAJ_RS07750 PF03061 Thioesterase superfamily PAJ_RS07755 PF03544 Gram-negative bacterial TonB protein C-terminal PAJ_RS07760 PF03795 YCII-related domain PAJ_RS07770 PF13396 Phospholipase_D-nuclease N-terminal PAJ_RS07770 PF13091 PLD-like domain PAJ_RS07775 PF04269 Protein of unknown function, DUF440 PAJ_RS07780 PF00005 ABC transporter PAJ_RS07780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS07785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS07785 PF00005 ABC transporter PAJ_RS07790 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS07790 PF12911 N-terminal TM domain of oligopeptide transport permease C PAJ_RS07795 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS07800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS07805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS07810 PF01914 MarC family integral membrane protein PAJ_RS07815 PF00171 Aldehyde dehydrogenase family PAJ_RS07815 PF00465 Iron-containing alcohol dehydrogenase PAJ_RS07820 PF00265 Thymidine kinase PAJ_RS07825 PF00816 H-NS histone family PAJ_RS07830 PF01370 NAD dependent epimerase/dehydratase family PAJ_RS07835 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PAJ_RS07835 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PAJ_RS07835 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PAJ_RS07840 PF00483 Nucleotidyl transferase PAJ_RS07845 PF00072 Response regulator receiver domain PAJ_RS07850 PF01734 Patatin-like phospholipase PAJ_RS07855 PF02810 SEC-C motif PAJ_RS07860 PF00551 Formyl transferase PAJ_RS07860 PF01842 ACT domain PAJ_RS07890 PF03372 Endonuclease/Exonuclease/phosphatase family PAJ_RS07895 PF07383 Protein of unknown function (DUF1496) PAJ_RS07900 PF01751 Toprim domain PAJ_RS07900 PF01131 DNA topoisomerase PAJ_RS07905 PF00881 Nitroreductase family PAJ_RS07910 PF01343 Peptidase family S49 PAJ_RS07915 PF00710 Asparaginase, N-terminal PAJ_RS07915 PF17763 Glutaminase/Asparaginase C-terminal domain PAJ_RS07920 PF00857 Isochorismatase family PAJ_RS07925 PF07023 Protein of unknown function (DUF1315) PAJ_RS07930 PF01641 SelR domain PAJ_RS07935 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PAJ_RS07935 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PAJ_RS07940 PF01263 Aldose 1-epimerase PAJ_RS07945 PF00248 Aldo/keto reductase family PAJ_RS07950 PF06629 MltA-interacting protein MipA PAJ_RS07955 PF08298 PrkA AAA domain PAJ_RS07955 PF06798 PrkA serine protein kinase C-terminal domain PAJ_RS07960 PF04285 Protein of unknown function (DUF444) PAJ_RS07965 PF03471 Transporter associated domain PAJ_RS07965 PF00999 Sodium/hydrogen exchanger family PAJ_RS07965 PF02080 TrkA-C domain PAJ_RS07975 PF02397 Bacterial sugar transferase PAJ_RS07980 PF07690 Major Facilitator Superfamily PAJ_RS07985 PF00842 Alanine racemase, C-terminal domain PAJ_RS07985 PF01168 Alanine racemase, N-terminal domain PAJ_RS07990 PF01266 FAD dependent oxidoreductase PAJ_RS07995 PF04293 SpoVR like protein PAJ_RS08000 PF07840 FadR C-terminal domain PAJ_RS08000 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS08005 PF02600 Disulfide bond formation protein DsbB PAJ_RS08010 PF03692 Putative zinc- or iron-chelating domain PAJ_RS08015 PF01557 Fumarylacetoacetate (FAA) hydrolase family PAJ_RS08020 PF05166 YcgL domain PAJ_RS08025 PF03775 Septum formation inhibitor MinC, C-terminal domain PAJ_RS08025 PF05209 Septum formation inhibitor MinC, N-terminal domain PAJ_RS08030 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PAJ_RS08035 PF03776 Septum formation topological specificity factor MinE PAJ_RS08040 PF01612 3'-5' exonuclease PAJ_RS08040 PF00570 HRDC domain PAJ_RS08045 PF00501 AMP-binding enzyme PAJ_RS08045 PF13193 AMP-binding enzyme C-terminal domain PAJ_RS08050 PF03843 Outer membrane lipoprotein Slp family PAJ_RS08055 PF00814 Glycoprotease family PAJ_RS08060 PF13307 Helicase C-terminal domain PAJ_RS08060 PF04851 Type III restriction enzyme, res subunit PAJ_RS08065 PF01042 Endoribonuclease L-PSP PAJ_RS08070 PF03701 Uncharacterised protein family (UPF0181) PAJ_RS08075 PF04715 Anthranilate synthase component I, N terminal region PAJ_RS08075 PF00425 chorismate binding enzyme PAJ_RS08080 PF00293 NUDIX domain PAJ_RS08085 PF03313 Serine dehydratase alpha chain PAJ_RS08085 PF03315 Serine dehydratase beta chain PAJ_RS08090 PF12792 CSS motif domain associated with EAL PAJ_RS08090 PF00563 EAL domain PAJ_RS08095 PF03741 Integral membrane protein TerC family PAJ_RS08095 PF03471 Transporter associated domain PAJ_RS08100 PF03830 PTS system sorbose subfamily IIB component PAJ_RS08100 PF03610 PTS system fructose IIA component PAJ_RS08105 PF03609 PTS system sorbose-specific iic component PAJ_RS08110 PF03613 PTS system mannose/fructose/sorbose family IID component PAJ_RS08115 PF06173 Protein of unknown function (DUF986) PAJ_RS08120 PF13847 Methyltransferase domain PAJ_RS08125 PF00313 'Cold-shock' DNA-binding domain PAJ_RS08135 PF13974 YebO-like protein PAJ_RS08140 PF13996 YobH-like protein PAJ_RS08145 PF01614 Bacterial transcriptional regulator PAJ_RS08145 PF09339 IclR helix-turn-helix domain PAJ_RS08150 PF07690 Major Facilitator Superfamily PAJ_RS08155 PF01435 Peptidase family M48 PAJ_RS08160 PF17804 Tail specific protease N-terminal domain PAJ_RS08160 PF03572 Peptidase family S41 PAJ_RS08160 PF00595 PDZ domain PAJ_RS08160 PF11818 C-terminal domain of tail specific protease (DUF3340) PAJ_RS08165 PF04352 ProQ/FINO family PAJ_RS08165 PF17516 ProQ C-terminal domain PAJ_RS08170 PF13185 GAF domain PAJ_RS08175 PF04403 Paraquat-inducible protein A PAJ_RS08180 PF02470 MlaD protein PAJ_RS08185 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF PAJ_RS08185 PF01189 16S rRNA methyltransferase RsmB/F PAJ_RS08185 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF PAJ_RS08190 PF06906 Protein of unknown function (DUF1272) PAJ_RS08195 PF07690 Major Facilitator Superfamily PAJ_RS08200 PF02028 BCCT, betaine/carnitine/choline family transporter PAJ_RS08205 PF00440 Bacterial regulatory proteins, tetR family PAJ_RS08205 PF13977 BetI-type transcriptional repressor, C-terminal PAJ_RS08210 PF00171 Aldehyde dehydrogenase family PAJ_RS08215 PF00732 GMC oxidoreductase PAJ_RS08215 PF05199 GMC oxidoreductase PAJ_RS08220 PF00893 Small Multidrug Resistance protein PAJ_RS08225 PF00893 Small Multidrug Resistance protein PAJ_RS08235 PF03466 LysR substrate binding domain PAJ_RS08235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS08240 PF00106 short chain dehydrogenase PAJ_RS08255 PF00672 HAMP domain PAJ_RS08255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS08255 PF02203 Tar ligand binding domain homologue PAJ_RS08265 PF02056 Family 4 glycosyl hydrolase PAJ_RS08265 PF11975 Family 4 glycosyl hydrolase C-terminal domain PAJ_RS08270 PF00367 phosphotransferase system, EIIB PAJ_RS08270 PF02378 Phosphotransferase system, EIIC PAJ_RS08275 PF07702 UTRA domain PAJ_RS08275 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS08280 PF00672 HAMP domain PAJ_RS08280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS08280 PF02203 Tar ligand binding domain homologue PAJ_RS08285 PF10709 Protein of unknown function (DUF2511) PAJ_RS08290 PF05425 Copper resistance protein D PAJ_RS08295 PF04234 CopC domain PAJ_RS08300 PF06440 DNA polymerase III, theta subunit PAJ_RS08305 PF00929 Exonuclease PAJ_RS08310 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain PAJ_RS08310 PF00326 Prolyl oligopeptidase family PAJ_RS08315 PF04391 Protein of unknown function (DUF533) PAJ_RS08320 PF02222 ATP-grasp domain PAJ_RS08320 PF01370 NAD dependent epimerase/dehydratase family PAJ_RS08325 PF01081 KDPG and KHG aldolase PAJ_RS08330 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain PAJ_RS08330 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain PAJ_RS08335 PF01418 Helix-turn-helix domain, rpiR family PAJ_RS08335 PF01380 SIS domain PAJ_RS08340 PF02887 Pyruvate kinase, alpha/beta domain PAJ_RS08340 PF00224 Pyruvate kinase, barrel domain PAJ_RS08345 PF07690 Major Facilitator Superfamily PAJ_RS08350 PF03279 Bacterial lipid A biosynthesis acyltransferase PAJ_RS08355 PF01476 LysM domain PAJ_RS08355 PF08525 Opacity-associated protein A N-terminal motif PAJ_RS08355 PF01551 Peptidase family M23 PAJ_RS08360 PF01297 Zinc-uptake complex component A periplasmic PAJ_RS08365 PF00005 ABC transporter PAJ_RS08370 PF00950 ABC 3 transport family PAJ_RS08380 PF07499 RuvA, C-terminal domain PAJ_RS08380 PF01330 RuvA N terminal domain PAJ_RS08385 PF02075 Crossover junction endodeoxyribonuclease RuvC PAJ_RS08390 PF01709 Transcriptional regulator PAJ_RS08395 PF00293 NUDIX domain PAJ_RS08400 PF01336 OB-fold nucleic acid binding domain PAJ_RS08400 PF02938 GAD domain PAJ_RS08400 PF00152 tRNA synthetases class II (D, K and N) PAJ_RS08405 PF01904 Protein of unknown function DUF72 PAJ_RS08410 PF01124 MAPEG family PAJ_RS08415 PF13649 Methyltransferase domain PAJ_RS08420 PF08003 Protein of unknown function (DUF1698) PAJ_RS08425 PF01810 LysE type translocator PAJ_RS08430 PF00465 Iron-containing alcohol dehydrogenase PAJ_RS08440 PF03932 CutC family PAJ_RS08445 PF00155 Aminotransferase class I and II PAJ_RS08450 PF06185 YecM protein PAJ_RS08455 PF00750 tRNA synthetases class I (R) PAJ_RS08455 PF03485 Arginyl tRNA synthetase N terminal domain PAJ_RS08455 PF05746 DALR anticodon binding domain PAJ_RS08465 PF00230 Major intrinsic protein PAJ_RS08475 PF00771 FHIPEP family PAJ_RS08480 PF01312 FlhB HrpN YscU SpaS Family PAJ_RS08485 PF04344 Chemotaxis phosphatase, CheZ PAJ_RS08490 PF00072 Response regulator receiver domain PAJ_RS08495 PF00072 Response regulator receiver domain PAJ_RS08495 PF01339 CheB methylesterase PAJ_RS08500 PF03705 CheR methyltransferase, all-alpha domain PAJ_RS08500 PF01739 CheR methyltransferase, SAM binding domain PAJ_RS08505 PF00672 HAMP domain PAJ_RS08505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS08505 PF02203 Tar ligand binding domain homologue PAJ_RS08510 PF00672 HAMP domain PAJ_RS08510 PF02203 Tar ligand binding domain homologue PAJ_RS08510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS08515 PF01584 CheW-like domain PAJ_RS08520 PF01584 CheW-like domain PAJ_RS08520 PF09078 CheY binding PAJ_RS08520 PF02895 Signal transducing histidine kinase, homodimeric domain PAJ_RS08520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS08520 PF01627 Hpt domain PAJ_RS08525 PF13677 Membrane MotB of proton-channel complex MotA/MotB PAJ_RS08525 PF00691 OmpA family PAJ_RS08530 PF01618 MotA/TolQ/ExbB proton channel family PAJ_RS08535 PF05280 Flagellar transcriptional activator (FlhC) PAJ_RS08540 PF05247 Flagellar transcriptional activator (FlhD) PAJ_RS08545 PF00982 Glycosyltransferase family 20 PAJ_RS08550 PF02358 Trehalose-phosphatase PAJ_RS08555 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS08555 PF00072 Response regulator receiver domain PAJ_RS08560 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS08560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS08565 PF01625 Peptide methionine sulfoxide reductase PAJ_RS08595 PF09084 NMT1/THI5 like PAJ_RS08600 PF00158 Sigma-54 interaction domain PAJ_RS08605 PF00296 Luciferase-like monooxygenase PAJ_RS08615 PF00296 Luciferase-like monooxygenase PAJ_RS08620 PF07690 Major Facilitator Superfamily PAJ_RS08630 PF02562 PhoH-like protein PAJ_RS08635 PF04261 Dyp-type peroxidase family PAJ_RS08640 PF13473 Cupredoxin-like domain PAJ_RS08640 PF09375 Imelysin PAJ_RS08645 PF03239 Iron permease FTR1 family PAJ_RS08650 PF00474 Sodium:solute symporter family PAJ_RS08655 PF01619 Proline dehydrogenase PAJ_RS08655 PF14850 DNA-binding domain of Proline dehydrogenase PAJ_RS08655 PF00171 Aldehyde dehydrogenase family PAJ_RS08655 PF18327 Proline utilization A proline dehydrogenase N-terminal domain PAJ_RS08660 PF02665 Nitrate reductase gamma subunit PAJ_RS08665 PF01757 Acyltransferase family PAJ_RS08670 PF00293 NUDIX domain PAJ_RS08675 PF01757 Acyltransferase family PAJ_RS08680 PF00005 ABC transporter PAJ_RS08685 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS08690 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS08695 PF00291 Pyridoxal-phosphate dependent enzyme PAJ_RS08700 PF02899 Phage integrase, N-terminal SAM-like domain PAJ_RS08705 PF04539 Sigma-70 region 3 PAJ_RS08705 PF04542 Sigma-70 region 2 PAJ_RS08705 PF04545 Sigma-70, region 4 PAJ_RS08715 PF00483 Nucleotidyl transferase PAJ_RS08720 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase PAJ_RS08725 PF04321 RmlD substrate binding domain PAJ_RS08745 PF00501 AMP-binding enzyme PAJ_RS08745 PF13193 AMP-binding enzyme C-terminal domain PAJ_RS08750 PF02780 Transketolase, C-terminal domain PAJ_RS08750 PF02779 Transketolase, pyrimidine binding domain PAJ_RS08755 PF00456 Transketolase, thiamine diphosphate binding domain PAJ_RS08785 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PAJ_RS08795 PF00535 Glycosyl transferase family 2 PAJ_RS08795 PF00534 Glycosyl transferases group 1 PAJ_RS08800 PF00669 Bacterial flagellin N-terminal helical region PAJ_RS08800 PF08884 Flagellin D3 domain PAJ_RS08800 PF00700 Bacterial flagellin C-terminal helical region PAJ_RS08805 PF00669 Bacterial flagellin N-terminal helical region PAJ_RS08805 PF08884 Flagellin D3 domain PAJ_RS08805 PF00700 Bacterial flagellin C-terminal helical region PAJ_RS08810 PF08884 Flagellin D3 domain PAJ_RS08810 PF00700 Bacterial flagellin C-terminal helical region PAJ_RS08810 PF00669 Bacterial flagellin N-terminal helical region PAJ_RS08815 PF00669 Bacterial flagellin N-terminal helical region PAJ_RS08815 PF08884 Flagellin D3 domain PAJ_RS08815 PF00700 Bacterial flagellin C-terminal helical region PAJ_RS08820 PF02465 Flagellar hook-associated protein 2 N-terminus PAJ_RS08820 PF07195 Flagellar hook-associated protein 2 C-terminus PAJ_RS08820 PF07196 Flagellin hook IN motif PAJ_RS08825 PF02561 Flagellar protein FliS PAJ_RS08830 PF05400 Flagellar protein FliT PAJ_RS08835 PF00128 Alpha amylase, catalytic domain PAJ_RS08835 PF02806 Alpha amylase, C-terminal all-beta domain PAJ_RS08840 PF13987 YedD-like protein PAJ_RS08850 PF10796 Sigma-S stabilisation anti-adaptor protein PAJ_RS08855 PF06183 DinI-like family PAJ_RS08870 PF02049 Flagellar hook-basal body complex protein FliE PAJ_RS08875 PF01514 Secretory protein of YscJ/FliF family PAJ_RS08875 PF08345 Flagellar M-ring protein C-terminal PAJ_RS08880 PF14842 FliG N-terminal domain PAJ_RS08880 PF14841 FliG middle domain PAJ_RS08880 PF01706 FliG C-terminal domain PAJ_RS08885 PF02108 Flagellar assembly protein FliH PAJ_RS08890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PAJ_RS08890 PF18269 T3SS EscN ATPase C-terminal domain PAJ_RS08895 PF02050 Flagellar FliJ protein PAJ_RS08900 PF02120 Flagellar hook-length control protein FliK PAJ_RS08905 PF03748 Flagellar basal body-associated protein FliL PAJ_RS08910 PF02154 Flagellar motor switch protein FliM PAJ_RS08910 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PAJ_RS08915 PF16973 Flagellar motor switch protein FliN N-terminal PAJ_RS08915 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PAJ_RS08920 PF04347 Flagellar biosynthesis protein, FliO PAJ_RS08925 PF00813 FliP family PAJ_RS08930 PF01313 Bacterial export proteins, family 3 PAJ_RS08935 PF01311 Bacterial export proteins, family 1 PAJ_RS08940 PF00196 Bacterial regulatory proteins, luxR family PAJ_RS08945 PF02203 Tar ligand binding domain homologue PAJ_RS08945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS08945 PF00672 HAMP domain PAJ_RS08950 PF10781 Dextransucrase DSRB PAJ_RS08975 PF09926 Uncharacterized small protein (DUF2158) PAJ_RS08980 PF05661 Protein of unknown function (DUF808) PAJ_RS08990 PF03852 DNA mismatch endonuclease Vsr PAJ_RS08995 PF18284 DNA methylase N-terminal domain PAJ_RS08995 PF00145 C-5 cytosine-specific DNA methylase PAJ_RS09000 PF00672 HAMP domain PAJ_RS09000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS09000 PF02743 Cache domain PAJ_RS09010 PF01966 HD domain PAJ_RS09020 PF06167 Glucose-regulated metallo-peptidase M90 PAJ_RS09030 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system PAJ_RS09040 PF00762 Ferrochelatase PAJ_RS09055 PF01032 FecCD transport family PAJ_RS09065 PF00005 ABC transporter PAJ_RS09075 PF00011 Hsp20/alpha crystallin family PAJ_RS09085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS09085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS09085 PF05043 Mga helix-turn-helix domain PAJ_RS09085 PF08279 HTH domain PAJ_RS09085 PF00874 PRD domain PAJ_RS09100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS09105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS09105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS09105 PF02378 Phosphotransferase system, EIIC PAJ_RS09210 PF00069 Protein kinase domain PAJ_RS09215 PF00004 ATPase family associated with various cellular activities (AAA) PAJ_RS09215 PF17871 AAA lid domain PAJ_RS09215 PF07724 AAA domain (Cdc48 subfamily) PAJ_RS09215 PF10431 C-terminal, D2-small domain, of ClpB protein PAJ_RS09225 PF05947 Type VI secretion system, TssF PAJ_RS09230 PF04965 Gene 25-like lysozyme PAJ_RS09255 PF07007 Lysozyme inhibitor LprI PAJ_RS09265 PF05638 Type VI secretion system effector, Hcp PAJ_RS09270 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PAJ_RS09275 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 PAJ_RS09295 PF00691 OmpA family PAJ_RS09295 PF13677 Membrane MotB of proton-channel complex MotA/MotB PAJ_RS09300 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PAJ_RS09315 PF01554 MatE PAJ_RS09320 PF01048 Phosphorylase superfamily PAJ_RS09320 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus PAJ_RS09330 PF00860 Permease family PAJ_RS09335 PF00072 Response regulator receiver domain PAJ_RS09335 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS09345 PF01116 Fructose-bisphosphate aldolase class-II PAJ_RS09355 PF13407 Periplasmic binding protein domain PAJ_RS09360 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS09365 PF00005 ABC transporter PAJ_RS09370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS09370 PF00072 Response regulator receiver domain PAJ_RS09370 PF13426 PAS domain PAJ_RS09375 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS09380 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS09390 PF00005 ABC transporter PAJ_RS09395 PF12706 Beta-lactamase superfamily domain PAJ_RS09405 PF07969 Amidohydrolase family PAJ_RS09410 PF00005 ABC transporter PAJ_RS09415 PF00005 ABC transporter PAJ_RS09420 PF06007 Phosphonate metabolism protein PhnJ PAJ_RS09430 PF05845 Bacterial phosphonate metabolism protein (PhnH) PAJ_RS09435 PF06754 Phosphonate metabolism protein PhnG PAJ_RS09445 PF00857 Isochorismatase family PAJ_RS09450 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PAJ_RS09460 PF01037 Lrp/AsnC ligand binding domain PAJ_RS09465 PF00202 Aminotransferase class-III PAJ_RS09470 PF07687 Peptidase dimerisation domain PAJ_RS09470 PF01546 Peptidase family M20/M25/M40 PAJ_RS09475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAJ_RS09485 PF01266 FAD dependent oxidoreductase PAJ_RS09490 PF00005 ABC transporter PAJ_RS09490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS09495 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS09500 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS09505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS09510 PF01266 FAD dependent oxidoreductase PAJ_RS09520 PF00171 Aldehyde dehydrogenase family PAJ_RS09525 PF00171 Aldehyde dehydrogenase family PAJ_RS09530 PF03466 LysR substrate binding domain PAJ_RS09530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS09535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS09535 PF03466 LysR substrate binding domain PAJ_RS09540 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS09545 PF00005 ABC transporter PAJ_RS09550 PF13407 Periplasmic binding protein domain PAJ_RS09560 PF02203 Tar ligand binding domain homologue PAJ_RS09560 PF00672 HAMP domain PAJ_RS09560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS09565 PF00111 2Fe-2S iron-sulfur cluster binding domain PAJ_RS09565 PF03473 MOSC domain PAJ_RS09565 PF03476 MOSC N-terminal beta barrel domain PAJ_RS09570 PF01223 DNA/RNA non-specific endonuclease PAJ_RS09590 PF01037 Lrp/AsnC ligand binding domain PAJ_RS09595 PF01810 LysE type translocator PAJ_RS09605 PF04030 D-arabinono-1,4-lactone oxidase PAJ_RS09605 PF01565 FAD binding domain PAJ_RS09610 PF01501 Glycosyl transferase family 8 PAJ_RS09615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PAJ_RS09615 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PAJ_RS09630 PF05336 L-rhamnose mutarotase PAJ_RS09635 PF00596 Class II Aldolase and Adducin N-terminal domain PAJ_RS09640 PF06134 L-rhamnose isomerase (RhaA) PAJ_RS09645 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PAJ_RS09645 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PAJ_RS09650 PF02311 AraC-like ligand binding domain PAJ_RS09650 PF12833 Helix-turn-helix domain PAJ_RS09655 PF12833 Helix-turn-helix domain PAJ_RS09655 PF02311 AraC-like ligand binding domain PAJ_RS09660 PF06379 L-rhamnose-proton symport protein (RhaT) PAJ_RS09665 PF00171 Aldehyde dehydrogenase family PAJ_RS09680 PF05638 Type VI secretion system effector, Hcp PAJ_RS09690 PF00296 Luciferase-like monooxygenase PAJ_RS09695 PF02558 Ketopantoate reductase PanE/ApbA PAJ_RS09695 PF08546 Ketopantoate reductase PanE/ApbA C terminal PAJ_RS09700 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS09705 PF04363 Protein of unknown function (DUF496) PAJ_RS09710 PF04632 Fusaric acid resistance protein family PAJ_RS09715 PF00768 D-alanyl-D-alanine carboxypeptidase PAJ_RS09715 PF07943 Penicillin-binding protein 5, C-terminal domain PAJ_RS09720 PF08411 Exonuclease C-terminal PAJ_RS09720 PF00929 Exonuclease PAJ_RS09725 PF02447 GntP family permease PAJ_RS09730 PF01261 Xylose isomerase-like TIM barrel PAJ_RS09735 PF00596 Class II Aldolase and Adducin N-terminal domain PAJ_RS09740 PF07005 Sugar-binding N-terminal domain PAJ_RS09740 PF17042 Nucleotide-binding C-terminal domain PAJ_RS09745 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PAJ_RS09745 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PAJ_RS09750 PF00455 DeoR C terminal sensor domain PAJ_RS09750 PF08220 DeoR-like helix-turn-helix domain PAJ_RS09755 PF13520 Amino acid permease PAJ_RS09760 PF00120 Glutamine synthetase, catalytic domain PAJ_RS09765 PF07722 Peptidase C26 PAJ_RS09775 PF01266 FAD dependent oxidoreductase PAJ_RS09780 PF01370 NAD dependent epimerase/dehydratase family PAJ_RS09785 PF08029 HisG, C-terminal domain PAJ_RS09785 PF01634 ATP phosphoribosyltransferase PAJ_RS09790 PF00815 Histidinol dehydrogenase PAJ_RS09795 PF00155 Aminotransferase class I and II PAJ_RS09800 PF00475 Imidazoleglycerol-phosphate dehydratase PAJ_RS09800 PF08645 Polynucleotide kinase 3 phosphatase PAJ_RS09805 PF00117 Glutamine amidotransferase class-I PAJ_RS09810 PF00977 Histidine biosynthesis protein PAJ_RS09815 PF00977 Histidine biosynthesis protein PAJ_RS09820 PF01502 Phosphoribosyl-AMP cyclohydrolase PAJ_RS09820 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase PAJ_RS09835 PF04073 Aminoacyl-tRNA editing domain PAJ_RS09840 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS09850 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain PAJ_RS09850 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PAJ_RS09875 PF01061 ABC-2 type transporter PAJ_RS09880 PF00005 ABC transporter PAJ_RS09900 PF16363 GDP-mannose 4,6 dehydratase PAJ_RS09905 PF00483 Nucleotidyl transferase PAJ_RS09915 PF00534 Glycosyl transferases group 1 PAJ_RS09920 PF04230 Polysaccharide pyruvyl transferase PAJ_RS09925 PF09008 Head binding PAJ_RS09930 PF00534 Glycosyl transferases group 1 PAJ_RS09935 PF00535 Glycosyl transferase family 2 PAJ_RS09940 PF00535 Glycosyl transferase family 2 PAJ_RS09950 PF13807 G-rich domain on putative tyrosine kinase PAJ_RS09950 PF02706 Chain length determinant protein PAJ_RS09950 PF13614 AAA domain PAJ_RS09955 PF01451 Low molecular weight phosphotyrosine protein phosphatase PAJ_RS09960 PF02563 Polysaccharide biosynthesis/export protein PAJ_RS09960 PF10531 SLBB domain PAJ_RS09960 PF18412 Outer-membrane lipoprotein Wza C-terminal domain PAJ_RS09965 PF02397 Bacterial sugar transferase PAJ_RS09970 PF03741 Integral membrane protein TerC family PAJ_RS09970 PF03471 Transporter associated domain PAJ_RS09970 PF00571 CBS domain PAJ_RS09975 PF05170 AsmA family PAJ_RS09980 PF00692 dUTPase PAJ_RS09985 PF00485 Phosphoribulokinase / Uridine kinase family PAJ_RS09990 PF01569 PAP2 superfamily PAJ_RS09995 PF08447 PAS fold PAJ_RS09995 PF13426 PAS domain PAJ_RS09995 PF08448 PAS fold PAJ_RS09995 PF00563 EAL domain PAJ_RS09995 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS09995 PF05231 MASE1 PAJ_RS10000 PF08447 PAS fold PAJ_RS10000 PF13426 PAS domain PAJ_RS10000 PF08448 PAS fold PAJ_RS10000 PF05231 MASE1 PAJ_RS10000 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS10000 PF00563 EAL domain PAJ_RS10005 PF00012 Hsp70 protein PAJ_RS10015 PF13533 Biotin-lipoyl like PAJ_RS10020 PF00873 AcrB/AcrD/AcrF family PAJ_RS10025 PF00873 AcrB/AcrD/AcrF family PAJ_RS10030 PF07690 Major Facilitator Superfamily PAJ_RS10035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS10035 PF00672 HAMP domain PAJ_RS10035 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS10040 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS10040 PF00072 Response regulator receiver domain PAJ_RS10045 PF01136 Peptidase family U32 PAJ_RS10045 PF16325 Peptidase family U32 C-terminal domain PAJ_RS10050 PF00781 Diacylglycerol kinase catalytic domain PAJ_RS10055 PF08125 Mannitol dehydrogenase C-terminal domain PAJ_RS10055 PF01232 Mannitol dehydrogenase Rossmann domain PAJ_RS10060 PF07729 FCD domain PAJ_RS10060 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS10065 PF08543 Phosphomethylpyrimidine kinase PAJ_RS10070 PF02110 Hydroxyethylthiazole kinase family PAJ_RS10095 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS10095 PF13192 Thioredoxin domain PAJ_RS10100 PF10417 C-terminal domain of 1-Cys peroxiredoxin PAJ_RS10100 PF00578 AhpC/TSA family PAJ_RS10105 PF00583 Acetyltransferase (GNAT) family PAJ_RS10110 PF10609 NUBPL iron-transfer P-loop NTPase PAJ_RS10115 PF01588 Putative tRNA binding domain PAJ_RS10115 PF09334 tRNA synthetases class I (M) PAJ_RS10120 PF03788 LrgA family PAJ_RS10125 PF04172 LrgB-like family PAJ_RS10130 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region PAJ_RS10130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PAJ_RS10135 PF03949 Malic enzyme, NAD binding domain PAJ_RS10135 PF00390 Malic enzyme, N-terminal domain PAJ_RS10140 PF02698 DUF218 domain PAJ_RS10145 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS10150 PF00005 ABC transporter PAJ_RS10160 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS10165 PF04235 Protein of unknown function (DUF418) PAJ_RS10170 PF01227 GTP cyclohydrolase I PAJ_RS10175 PF06779 Uncharacterised MFS-type transporter YbfB PAJ_RS10180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS10180 PF03466 LysR substrate binding domain PAJ_RS10185 PF00107 Zinc-binding dehydrogenase PAJ_RS10185 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS10190 PF00756 Putative esterase PAJ_RS10195 PF00005 ABC transporter PAJ_RS10200 PF01032 FecCD transport family PAJ_RS10205 PF00324 Amino acid permease PAJ_RS10210 PF03466 LysR substrate binding domain PAJ_RS10210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS10220 PF03601 Conserved hypothetical protein 698 PAJ_RS10225 PF04754 Putative transposase, YhgA-like PAJ_RS10230 PF01261 Xylose isomerase-like TIM barrel PAJ_RS10235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS10235 PF02378 Phosphotransferase system, EIIC PAJ_RS10240 PF00294 pfkB family carbohydrate kinase PAJ_RS10245 PF00381 PTS HPr component phosphorylation site PAJ_RS10245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS10250 PF03605 Anaerobic c4-dicarboxylate membrane transporter PAJ_RS10255 PF00701 Dihydrodipicolinate synthetase family PAJ_RS10260 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS10265 PF07690 Major Facilitator Superfamily PAJ_RS10275 PF01132 Elongation factor P (EF-P) OB domain PAJ_RS10275 PF08207 Elongation factor P (EF-P) KOW-like domain PAJ_RS10275 PF09285 Elongation factor P, C-terminal PAJ_RS10280 PF02492 CobW/HypB/UreG, nucleotide-binding domain PAJ_RS10280 PF07683 Cobalamin synthesis protein cobW C-terminal domain PAJ_RS10285 PF01569 PAP2 superfamily PAJ_RS10290 PF00877 NlpC/P60 family PAJ_RS10295 PF12792 CSS motif domain associated with EAL PAJ_RS10295 PF00563 EAL domain PAJ_RS10300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS10305 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS10310 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS10310 PF12911 N-terminal TM domain of oligopeptide transport permease C PAJ_RS10315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS10315 PF00005 ABC transporter PAJ_RS10320 PF13989 YejG-like protein PAJ_RS10325 PF07690 Major Facilitator Superfamily PAJ_RS10330 PF00849 RNA pseudouridylate synthase PAJ_RS10330 PF01479 S4 domain PAJ_RS10335 PF04851 Type III restriction enzyme, res subunit PAJ_RS10335 PF00271 Helicase conserved C-terminal domain PAJ_RS10340 PF01386 Ribosomal L25p family PAJ_RS10345 PF04245 37-kD nucleoid-associated bacterial protein PAJ_RS10350 PF07208 Protein of unknown function (DUF1414) PAJ_RS10355 PF00884 Sulfatase PAJ_RS10355 PF11893 Domain of unknown function (DUF3413) PAJ_RS10380 PF01523 Putative modulator of DNA gyrase PAJ_RS10385 PF01523 Putative modulator of DNA gyrase PAJ_RS10390 PF00085 Thioredoxin PAJ_RS10395 PF06472 ABC transporter transmembrane region 2 PAJ_RS10395 PF00005 ABC transporter PAJ_RS10400 PF07715 TonB-dependent Receptor Plug Domain PAJ_RS10400 PF00593 TonB dependent receptor PAJ_RS10400 PF07660 Secretin and TonB N terminus short domain PAJ_RS10405 PF04542 Sigma-70 region 2 PAJ_RS10405 PF08281 Sigma-70, region 4 PAJ_RS10415 PF03544 Gram-negative bacterial TonB protein C-terminal PAJ_RS10420 PF01618 MotA/TolQ/ExbB proton channel family PAJ_RS10425 PF02472 Biopolymer transport protein ExbD/TolR PAJ_RS10430 PF06964 Alpha-L-arabinofuranosidase C-terminal domain PAJ_RS10440 PF00924 Mechanosensitive ion channel PAJ_RS10450 PF00005 ABC transporter PAJ_RS10455 PF13532 2OG-Fe(II) oxygenase superfamily PAJ_RS10460 PF02424 ApbE family PAJ_RS10470 PF00267 Gram-negative porin PAJ_RS10480 PF00005 ABC transporter PAJ_RS10480 PF00664 ABC transporter transmembrane region PAJ_RS10500 PF07690 Major Facilitator Superfamily PAJ_RS10505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS10505 PF01627 Hpt domain PAJ_RS10505 PF16359 RcsD-ABL domain PAJ_RS10510 PF00072 Response regulator receiver domain PAJ_RS10510 PF00196 Bacterial regulatory proteins, luxR family PAJ_RS10515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS10515 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS10515 PF00072 Response regulator receiver domain PAJ_RS10515 PF09456 RcsC Alpha-Beta-Loop (ABL) PAJ_RS10520 PF00521 DNA gyrase/topoisomerase IV, subunit A PAJ_RS10520 PF03989 DNA gyrase C-terminal domain, beta-propeller PAJ_RS10530 PF03477 ATP cone domain PAJ_RS10530 PF02867 Ribonucleotide reductase, barrel domain PAJ_RS10530 PF00317 Ribonucleotide reductase, all-alpha domain PAJ_RS10535 PF00268 Ribonucleotide reductase, small chain PAJ_RS10540 PF00111 2Fe-2S iron-sulfur cluster binding domain PAJ_RS10545 PF00994 Probable molybdopterin binding domain PAJ_RS10550 PF05957 Bacterial protein of unknown function (DUF883) PAJ_RS10555 PF04349 Periplasmic glucan biosynthesis protein, MdoG PAJ_RS10560 PF13673 Acetyltransferase (GNAT) domain PAJ_RS10570 PF00361 Proton-conducting membrane transporter PAJ_RS10575 PF00361 Proton-conducting membrane transporter PAJ_RS10580 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PAJ_RS10580 PF00361 Proton-conducting membrane transporter PAJ_RS10585 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PAJ_RS10590 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PAJ_RS10595 PF12838 4Fe-4S dicluster domain PAJ_RS10600 PF00146 NADH dehydrogenase PAJ_RS10605 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PAJ_RS10605 PF01568 Molydopterin dinucleotide binding domain PAJ_RS10605 PF00384 Molybdopterin oxidoreductase PAJ_RS10605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PAJ_RS10610 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PAJ_RS10610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PAJ_RS10610 PF10531 SLBB domain PAJ_RS10620 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PAJ_RS10620 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PAJ_RS10625 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PAJ_RS10630 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PAJ_RS10635 PF03466 LysR substrate binding domain PAJ_RS10635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS10640 PF00155 Aminotransferase class I and II PAJ_RS10650 PF13419 Haloacid dehalogenase-like hydrolase PAJ_RS10655 PF03887 YfbU domain PAJ_RS10660 PF04217 Protein of unknown function, DUF412 PAJ_RS10665 PF00871 Acetokinase family PAJ_RS10670 PF07085 DRTGG domain PAJ_RS10670 PF01515 Phosphate acetyl/butaryl transferase PAJ_RS10675 PF00005 ABC transporter PAJ_RS10675 PF08402 TOBE domain PAJ_RS10680 PF00155 Aminotransferase class I and II PAJ_RS10680 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS10685 PF00202 Aminotransferase class-III PAJ_RS10695 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS10700 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS10715 PF00293 NUDIX domain PAJ_RS10720 PF14834 Glutathione S-transferase, C-terminal domain PAJ_RS10720 PF02798 Glutathione S-transferase, N-terminal domain PAJ_RS10725 PF08338 Domain of unknown function (DUF1731) PAJ_RS10725 PF01370 NAD dependent epimerase/dehydratase family PAJ_RS10730 PF07690 Major Facilitator Superfamily PAJ_RS10735 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PAJ_RS10735 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PAJ_RS10740 PF08125 Mannitol dehydrogenase C-terminal domain PAJ_RS10740 PF01232 Mannitol dehydrogenase Rossmann domain PAJ_RS10745 PF04198 Putative sugar-binding domain PAJ_RS10750 PF00005 ABC transporter PAJ_RS10755 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS10760 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS10765 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS10770 PF02441 Flavoprotein PAJ_RS10775 PF00156 Phosphoribosyl transferase domain PAJ_RS10780 PF02674 Colicin V production protein PAJ_RS10785 PF05036 Sporulation related domain PAJ_RS10790 PF08245 Mur ligase middle domain PAJ_RS10790 PF02875 Mur ligase family, glutamate ligase domain PAJ_RS10795 PF17848 Acetyl-coA carboxylase zinc finger domain PAJ_RS10795 PF01039 Carboxyl transferase domain PAJ_RS10800 PF09335 SNARE associated Golgi protein PAJ_RS10805 PF01416 tRNA pseudouridine synthase PAJ_RS10810 PF02774 Semialdehyde dehydrogenase, dimerisation domain PAJ_RS10810 PF01118 Semialdehyde dehydrogenase, NAD binding domain PAJ_RS10815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAJ_RS10815 PF11890 Domain of unknown function (DUF3410) PAJ_RS10815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PAJ_RS10825 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS10825 PF08521 Two-component sensor kinase N-terminal PAJ_RS10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS10830 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS10830 PF00072 Response regulator receiver domain PAJ_RS10845 PF01970 Tripartite tricarboxylate transporter TctA family PAJ_RS10855 PF00581 Rhodanese-like domain PAJ_RS10860 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS10860 PF00155 Aminotransferase class I and II PAJ_RS10865 PF00109 Beta-ketoacyl synthase, N-terminal domain PAJ_RS10865 PF02801 Beta-ketoacyl synthase, C-terminal domain PAJ_RS10870 PF01266 FAD dependent oxidoreductase PAJ_RS10870 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS10875 PF08891 YfcL protein PAJ_RS10880 PF04315 Elongation factor P hydroxylase PAJ_RS10885 PF01925 Sulfite exporter TauE/SafE PAJ_RS10890 PF03411 Penicillin-insensitive murein endopeptidase PAJ_RS10895 PF01264 Chorismate synthase PAJ_RS10900 PF05175 Methyltransferase small domain PAJ_RS10905 PF01713 Smr domain PAJ_RS10910 PF02203 Tar ligand binding domain homologue PAJ_RS10910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS10910 PF00672 HAMP domain PAJ_RS10915 PF00300 Histidine phosphatase superfamily (branch 1) PAJ_RS10920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PAJ_RS10920 PF00378 Enoyl-CoA hydratase/isomerase PAJ_RS10920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PAJ_RS10925 PF02803 Thiolase, C-terminal domain PAJ_RS10925 PF00108 Thiolase, N-terminal domain PAJ_RS10930 PF04175 Protein of unknown function (DUF406) PAJ_RS10935 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) PAJ_RS10940 PF04333 MlaA lipoprotein PAJ_RS10945 PF03918 Cytochrome C biogenesis protein PAJ_RS10950 PF03918 Cytochrome C biogenesis protein PAJ_RS10955 PF08534 Redoxin PAJ_RS10960 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal PAJ_RS10960 PF01578 Cytochrome C assembly protein PAJ_RS10965 PF03100 CcmE PAJ_RS10970 PF04995 Heme exporter protein D (CcmD) PAJ_RS10975 PF01578 Cytochrome C assembly protein PAJ_RS10980 PF03379 CcmB protein PAJ_RS10985 PF00005 ABC transporter PAJ_RS10990 PF01226 Formate/nitrite transporter PAJ_RS11010 PF03009 Glycerophosphoryl diester phosphodiesterase family PAJ_RS11015 PF00005 ABC transporter PAJ_RS11015 PF17912 MalK OB fold domain PAJ_RS11020 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS11035 PF01047 MarR family PAJ_RS11035 PF00480 ROK family PAJ_RS11060 PF02753 Pili assembly chaperone PapD, C-terminal domain PAJ_RS11060 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PAJ_RS11085 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PAJ_RS11085 PF02753 Pili assembly chaperone PapD, C-terminal domain PAJ_RS11090 PF13953 PapC C-terminal domain PAJ_RS11090 PF13954 PapC N-terminal domain PAJ_RS11090 PF00577 Outer membrane usher protein PAJ_RS11100 PF00419 Fimbrial protein PAJ_RS11125 PF07690 Major Facilitator Superfamily PAJ_RS11130 PF08450 SMP-30/Gluconolactonase/LRE-like region PAJ_RS11150 PF09339 IclR helix-turn-helix domain PAJ_RS11150 PF01614 Bacterial transcriptional regulator PAJ_RS11160 PF13533 Biotin-lipoyl like PAJ_RS11165 PF00155 Aminotransferase class I and II PAJ_RS11175 PF06580 Histidine kinase PAJ_RS11175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS11175 PF07694 5TMR of 5TMR-LYT PAJ_RS11180 PF04397 LytTr DNA-binding domain PAJ_RS11180 PF00072 Response regulator receiver domain PAJ_RS11185 PF02685 Glucokinase PAJ_RS11190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PAJ_RS11190 PF00205 Thiamine pyrophosphate enzyme, central domain PAJ_RS11190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PAJ_RS11195 PF00248 Aldo/keto reductase family PAJ_RS11205 PF01596 O-methyltransferase PAJ_RS11210 PF01566 Natural resistance-associated macrophage protein PAJ_RS11215 PF07670 Nucleoside recognition PAJ_RS11215 PF07662 Na+ dependent nucleoside transporter C-terminus PAJ_RS11215 PF01773 Na+ dependent nucleoside transporter N-terminus PAJ_RS11220 PF01527 Transposase PAJ_RS11225 PF13276 HTH-like domain PAJ_RS11225 PF13683 Integrase core domain PAJ_RS11245 PF01226 Formate/nitrite transporter PAJ_RS11250 PF07037 Putative transcription regulator (DUF1323) PAJ_RS11255 PF00749 tRNA synthetases class I (E and Q), catalytic domain PAJ_RS11290 PF03466 LysR substrate binding domain PAJ_RS11290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS11295 PF13593 SBF-like CPA transporter family (DUF4137) PAJ_RS11300 PF12843 Putative quorum-sensing-regulated virulence factor PAJ_RS11305 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PAJ_RS11305 PF03120 NAD-dependent DNA ligase OB-fold domain PAJ_RS11305 PF01653 NAD-dependent DNA ligase adenylation domain PAJ_RS11305 PF00533 BRCA1 C Terminus (BRCT) domain PAJ_RS11305 PF12826 Helix-hairpin-helix motif PAJ_RS11310 PF04354 ZipA, C-terminal FtsZ-binding domain PAJ_RS11320 PF00291 Pyridoxal-phosphate dependent enzyme PAJ_RS11325 PF00381 PTS HPr component phosphorylation site PAJ_RS11330 PF05524 PEP-utilising enzyme, N-terminal PAJ_RS11330 PF00391 PEP-utilising enzyme, mobile domain PAJ_RS11330 PF02896 PEP-utilising enzyme, TIM barrel domain PAJ_RS11335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PAJ_RS11340 PF16527 Two-component sensor protein CpxA, periplasmic domain PAJ_RS11340 PF00672 HAMP domain PAJ_RS11340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS11340 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS11345 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS11345 PF00072 Response regulator receiver domain PAJ_RS11350 PF00291 Pyridoxal-phosphate dependent enzyme PAJ_RS11355 PF00005 ABC transporter PAJ_RS11360 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS11365 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS11375 PF06572 Protein of unknown function (DUF1131) PAJ_RS11380 PF11143 Protein of unknown function (DUF2919) PAJ_RS11385 PF00583 Acetyltransferase (GNAT) family PAJ_RS11390 PF01520 N-acetylmuramoyl-L-alanine amidase PAJ_RS11395 PF01218 Coproporphyrinogen III oxidase PAJ_RS11400 PF00390 Malic enzyme, N-terminal domain PAJ_RS11400 PF03949 Malic enzyme, NAD binding domain PAJ_RS11400 PF01515 Phosphate acetyl/butaryl transferase PAJ_RS11405 PF00923 Transaldolase/Fructose-6-phosphate aldolase PAJ_RS11410 PF02779 Transketolase, pyrimidine binding domain PAJ_RS11410 PF02780 Transketolase, C-terminal domain PAJ_RS11410 PF00456 Transketolase, thiamine diphosphate binding domain PAJ_RS11415 PF03390 2-hydroxycarboxylate transporter family PAJ_RS11425 PF17203 Single cache domain 3 PAJ_RS11425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS11430 PF12431 Transcriptional regulator PAJ_RS11430 PF00072 Response regulator receiver domain PAJ_RS11435 PF00144 Beta-lactamase PAJ_RS11450 PF00455 DeoR C terminal sensor domain PAJ_RS11450 PF08220 DeoR-like helix-turn-helix domain PAJ_RS11460 PF00005 ABC transporter PAJ_RS11465 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS11470 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS11475 PF00834 Ribulose-phosphate 3 epimerase family PAJ_RS11480 PF00480 ROK family PAJ_RS11485 PF00294 pfkB family carbohydrate kinase PAJ_RS11490 PF00293 NUDIX domain PAJ_RS11495 PF00324 Amino acid permease PAJ_RS11505 PF00672 HAMP domain PAJ_RS11505 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PAJ_RS11505 PF07730 Histidine kinase PAJ_RS11505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS11510 PF00196 Bacterial regulatory proteins, luxR family PAJ_RS11510 PF00072 Response regulator receiver domain PAJ_RS11515 PF00873 AcrB/AcrD/AcrF family PAJ_RS11520 PF03960 ArsC family PAJ_RS11525 PF01546 Peptidase family M20/M25/M40 PAJ_RS11525 PF07687 Peptidase dimerisation domain PAJ_RS11530 PF13980 Uncharacterised protein family (UPF0370) PAJ_RS11535 PF02230 Phospholipase/Carboxylesterase PAJ_RS11540 PF08351 Domain of unknown function (DUF1726) PAJ_RS11540 PF13718 GNAT acetyltransferase 2 PAJ_RS11540 PF05127 Helicase PAJ_RS11540 PF17176 tRNA-binding domain PAJ_RS11545 PF04228 Putative neutral zinc metallopeptidase PAJ_RS11550 PF01259 SAICAR synthetase PAJ_RS11555 PF06804 NlpB/DapX lipoprotein PAJ_RS11560 PF00701 Dihydrodipicolinate synthetase family PAJ_RS11565 PF01842 ACT domain PAJ_RS11570 PF00578 AhpC/TSA family PAJ_RS11575 PF01594 AI-2E family transporter PAJ_RS11580 PF07944 Beta-L-arabinofuranosidase, GH127 PAJ_RS11595 PF08448 PAS fold PAJ_RS11595 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS11600 PF00149 Calcineurin-like phosphoesterase PAJ_RS11605 PF08402 TOBE domain PAJ_RS11605 PF00005 ABC transporter PAJ_RS11610 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS11615 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS11625 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS11630 PF01435 Peptidase family M48 PAJ_RS11635 PF03960 ArsC family PAJ_RS11640 PF00308 Bacterial dnaA protein PAJ_RS11645 PF00860 Permease family PAJ_RS11655 PF00586 AIR synthase related protein, N-terminal domain PAJ_RS11655 PF02769 AIR synthase related protein, C-terminal domain PAJ_RS11660 PF00551 Formyl transferase PAJ_RS11665 PF00005 ABC transporter PAJ_RS11670 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS11675 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS11680 PF02503 Polyphosphate kinase middle domain PAJ_RS11680 PF17941 Polyphosphate kinase C-terminal domain 1 PAJ_RS11680 PF13090 Polyphosphate kinase C-terminal domain 2 PAJ_RS11680 PF13089 Polyphosphate kinase N-terminal domain PAJ_RS11685 PF02541 Ppx/GppA phosphatase family PAJ_RS11690 PF03848 Tellurite resistance protein TehB PAJ_RS11700 PF03448 MgtE intracellular N domain PAJ_RS11700 PF01769 Divalent cation transporter PAJ_RS11700 PF00571 CBS domain PAJ_RS11805 PF00589 Phage integrase family PAJ_RS11805 PF13356 Arm DNA-binding domain PAJ_RS11810 PF02540 NAD synthase PAJ_RS11810 PF00958 GMP synthase C terminal domain PAJ_RS11810 PF00117 Glutamine amidotransferase class-I PAJ_RS11815 PF00478 IMP dehydrogenase / GMP reductase domain PAJ_RS11815 PF00571 CBS domain PAJ_RS11820 PF13742 OB-fold nucleic acid binding domain PAJ_RS11820 PF02601 Exonuclease VII, large subunit PAJ_RS11825 PF16485 Protealysin propeptide PAJ_RS11825 PF02868 Thermolysin metallopeptidase, alpha-helical domain PAJ_RS11825 PF01447 Thermolysin metallopeptidase, catalytic domain PAJ_RS11835 PF13360 PQQ-like domain PAJ_RS11835 PF01011 PQQ enzyme repeat PAJ_RS11845 PF01926 50S ribosome-binding GTPase PAJ_RS11845 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PAJ_RS11850 PF13360 PQQ-like domain PAJ_RS11855 PF09976 Tetratricopeptide repeat-like domain PAJ_RS11860 PF03129 Anticodon binding domain PAJ_RS11860 PF13393 Histidyl-tRNA synthetase PAJ_RS11865 PF04551 GcpE protein PAJ_RS11870 PF13464 Domain of unknown function (DUF4115) PAJ_RS11880 PF04055 Radical SAM superfamily PAJ_RS11885 PF00334 Nucleoside diphosphate kinase PAJ_RS11890 PF00912 Transglycosylase PAJ_RS11890 PF00905 Penicillin binding protein transpeptidase domain PAJ_RS11890 PF06832 Penicillin-Binding Protein C-terminus Family PAJ_RS11895 PF11974 Bacterial alpha-2-macroglobulin MG3 domain PAJ_RS11895 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain PAJ_RS11895 PF17962 Bacterial macroglobulin domain 6 PAJ_RS11895 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain PAJ_RS11895 PF07703 Alpha-2-macroglobulin bait region domain PAJ_RS11895 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain PAJ_RS11895 PF07678 A-macroglobulin TED domain PAJ_RS11895 PF00207 Alpha-2-macroglobulin family PAJ_RS11895 PF01835 MG2 domain PAJ_RS11905 PF07179 SseB protein N-terminal domain PAJ_RS11905 PF14581 SseB protein C-terminal domain PAJ_RS11910 PF12404 Peptidase PAJ_RS11910 PF00883 Cytosol aminopeptidase family, catalytic domain PAJ_RS11915 PF00266 Aminotransferase class-V PAJ_RS11920 PF02082 Transcriptional regulator PAJ_RS11925 PF00588 SpoU rRNA Methylase family PAJ_RS11930 PF00459 Inositol monophosphatase family PAJ_RS11940 PF03824 High-affinity nickel-transport protein PAJ_RS11950 PF00874 PRD domain PAJ_RS11955 PF12832 MFS_1 like family PAJ_RS11960 PF00464 Serine hydroxymethyltransferase PAJ_RS11965 PF00175 Oxidoreductase NAD-binding domain PAJ_RS11965 PF00042 Globin PAJ_RS11965 PF00970 Oxidoreductase FAD-binding domain PAJ_RS11970 PF00543 Nitrogen regulatory protein P-II PAJ_RS11975 PF00158 Sigma-54 interaction domain PAJ_RS11975 PF00072 Response regulator receiver domain PAJ_RS11980 PF13942 YfhG lipoprotein PAJ_RS11985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS11985 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS11990 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PAJ_RS11990 PF02769 AIR synthase related protein, C-terminal domain PAJ_RS11990 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PAJ_RS11995 PF01464 Transglycosylase SLT domain PAJ_RS11995 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS12010 PF01380 SIS domain PAJ_RS12010 PF01418 Helix-turn-helix domain, rpiR family PAJ_RS12015 PF12838 4Fe-4S dicluster domain PAJ_RS12020 PF01648 4'-phosphopantetheinyl transferase superfamily PAJ_RS12025 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PAJ_RS12030 PF02565 Recombination protein O C terminal PAJ_RS12030 PF11967 Recombination protein O N terminal PAJ_RS12035 PF07650 KH domain PAJ_RS12035 PF01926 50S ribosome-binding GTPase PAJ_RS12040 PF00035 Double-stranded RNA binding motif PAJ_RS12040 PF14622 Ribonuclease-III-like PAJ_RS12045 PF10502 Signal peptidase, peptidase S26 PAJ_RS12050 PF00009 Elongation factor Tu GTP binding domain PAJ_RS12050 PF00679 Elongation factor G C-terminus PAJ_RS12050 PF03144 Elongation factor Tu domain 2 PAJ_RS12050 PF06421 GTP-binding protein LepA C-terminus PAJ_RS12060 PF17188 MucB/RseB C-terminal domain PAJ_RS12060 PF03888 MucB/RseB N-terminal domain PAJ_RS12065 PF03873 Anti sigma-E protein RseA, C-terminal domain PAJ_RS12065 PF03872 Anti sigma-E protein RseA, N-terminal domain PAJ_RS12070 PF04542 Sigma-70 region 2 PAJ_RS12070 PF08281 Sigma-70, region 4 PAJ_RS12075 PF00890 FAD binding domain PAJ_RS12075 PF02910 Fumarate reductase flavoprotein C-term PAJ_RS12080 PF05175 Methyltransferase small domain PAJ_RS12085 PF00271 Helicase conserved C-terminal domain PAJ_RS12085 PF00270 DEAD/DEAH box helicase PAJ_RS12090 PF01228 Glycine radical PAJ_RS12095 PF03167 Uracil DNA glycosylase superfamily PAJ_RS12100 PF01025 GrpE PAJ_RS12105 PF01513 ATP-NAD kinase PAJ_RS12110 PF02463 RecF/RecN/SMC N terminal domain PAJ_RS12115 PF04355 SmpA / OmlA family PAJ_RS12120 PF03658 RnfH family Ubiquitin PAJ_RS12125 PF03364 Polyketide cyclase / dehydrase and lipid transport PAJ_RS12130 PF01668 SmpB protein PAJ_RS12140 PF00589 Phage integrase family PAJ_RS12140 PF13356 Arm DNA-binding domain PAJ_RS12170 PF01527 Transposase PAJ_RS12175 PF13683 Integrase core domain PAJ_RS12175 PF13276 HTH-like domain PAJ_RS12215 PF03230 Antirestriction protein PAJ_RS12230 PF06755 CbtA_toxin of type IV toxin-antitoxin system PAJ_RS12240 PF00561 alpha/beta hydrolase fold PAJ_RS12245 PF07715 TonB-dependent Receptor Plug Domain PAJ_RS12245 PF00593 TonB dependent receptor PAJ_RS12250 PF01497 Periplasmic binding protein PAJ_RS12255 PF01032 FecCD transport family PAJ_RS12260 PF01032 FecCD transport family PAJ_RS12265 PF00005 ABC transporter PAJ_RS12270 PF09339 IclR helix-turn-helix domain PAJ_RS12270 PF01614 Bacterial transcriptional regulator PAJ_RS12275 PF03737 Aldolase/RraA PAJ_RS12280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAJ_RS12280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PAJ_RS12285 PF08450 SMP-30/Gluconolactonase/LRE-like region PAJ_RS12290 PF07690 Major Facilitator Superfamily PAJ_RS12295 PF07690 Major Facilitator Superfamily PAJ_RS12305 PF00874 PRD domain PAJ_RS12305 PF03123 CAT RNA binding domain PAJ_RS12315 PF00107 Zinc-binding dehydrogenase PAJ_RS12315 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS12320 PF01638 HxlR-like helix-turn-helix PAJ_RS12330 PF02525 Flavodoxin-like fold PAJ_RS12335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS12335 PF03466 LysR substrate binding domain PAJ_RS12340 PF02954 Bacterial regulatory protein, Fis family PAJ_RS12340 PF00072 Response regulator receiver domain PAJ_RS12340 PF00158 Sigma-54 interaction domain PAJ_RS12345 PF01979 Amidohydrolase family PAJ_RS12350 PF00939 Sodium:sulfate symporter transmembrane region PAJ_RS12355 PF03737 Aldolase/RraA PAJ_RS12360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAJ_RS12360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PAJ_RS12365 PF00267 Gram-negative porin PAJ_RS12375 PF00873 AcrB/AcrD/AcrF family PAJ_RS12390 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS12390 PF00072 Response regulator receiver domain PAJ_RS12395 PF16736 Single Cache-like PAJ_RS12395 PF00989 PAS fold PAJ_RS12395 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS12395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS12415 PF01032 FecCD transport family PAJ_RS12420 PF00005 ABC transporter PAJ_RS12440 PF00689 Cation transporting ATPase, C-terminus PAJ_RS12440 PF00690 Cation transporter/ATPase, N-terminus PAJ_RS12445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS12450 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS12455 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS12455 PF12911 N-terminal TM domain of oligopeptide transport permease C PAJ_RS12460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS12460 PF00005 ABC transporter PAJ_RS12465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS12465 PF00005 ABC transporter PAJ_RS12470 PF13302 Acetyltransferase (GNAT) domain PAJ_RS12480 PF02574 Homocysteine S-methyltransferase PAJ_RS12485 PF00324 Amino acid permease PAJ_RS12490 PF09400 Protein of unknown function (DUF2002) PAJ_RS12495 PF05957 Bacterial protein of unknown function (DUF883) PAJ_RS12500 PF00462 Glutaredoxin PAJ_RS12505 PF07972 NrdI Flavodoxin like PAJ_RS12510 PF02867 Ribonucleotide reductase, barrel domain PAJ_RS12510 PF00317 Ribonucleotide reductase, all-alpha domain PAJ_RS12510 PF08343 Ribonucleotide reductase N-terminal PAJ_RS12515 PF00268 Ribonucleotide reductase, small chain PAJ_RS12520 PF00005 ABC transporter PAJ_RS12520 PF00571 CBS domain PAJ_RS12525 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS12530 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PAJ_RS12535 PF07690 Major Facilitator Superfamily PAJ_RS12540 PF01047 MarR family PAJ_RS12545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PAJ_RS12545 PF00529 HlyD membrane-fusion protein of T1SS PAJ_RS12555 PF00107 Zinc-binding dehydrogenase PAJ_RS12555 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS12560 PF01638 HxlR-like helix-turn-helix PAJ_RS12565 PF08032 RNA 2'-O ribose methyltransferase substrate binding PAJ_RS12565 PF00588 SpoU rRNA Methylase family PAJ_RS12570 PF00085 Thioredoxin PAJ_RS12575 PF03942 DTW domain PAJ_RS12580 PF13380 CoA binding domain PAJ_RS12580 PF00583 Acetyltransferase (GNAT) family PAJ_RS12580 PF13607 Succinyl-CoA ligase like flavodoxin domain PAJ_RS12585 PF13091 PLD-like domain PAJ_RS12590 PF00083 Sugar (and other) transporter PAJ_RS12595 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS12595 PF00107 Zinc-binding dehydrogenase PAJ_RS12600 PF01037 Lrp/AsnC ligand binding domain PAJ_RS12630 PF00004 ATPase family associated with various cellular activities (AAA) PAJ_RS12630 PF10431 C-terminal, D2-small domain, of ClpB protein PAJ_RS12630 PF02861 Clp amino terminal domain, pathogenicity island component PAJ_RS12630 PF17871 AAA lid domain PAJ_RS12630 PF07724 AAA domain (Cdc48 subfamily) PAJ_RS12635 PF02578 Multi-copper polyphenol oxidoreductase laccase PAJ_RS12640 PF01479 S4 domain PAJ_RS12640 PF00849 RNA pseudouridylate synthase PAJ_RS12645 PF13525 Outer membrane lipoprotein PAJ_RS12650 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PAJ_RS12655 PF01817 Chorismate mutase type II PAJ_RS12655 PF00800 Prephenate dehydratase PAJ_RS12660 PF02153 Prephenate dehydrogenase PAJ_RS12660 PF01817 Chorismate mutase type II PAJ_RS12665 PF00793 DAHP synthetase I family PAJ_RS12680 PF01245 Ribosomal protein L19 PAJ_RS12685 PF01746 tRNA (Guanine-1)-methyltransferase PAJ_RS12690 PF05239 PRC-barrel domain PAJ_RS12690 PF01782 RimM N-terminal domain PAJ_RS12695 PF00886 Ribosomal protein S16 PAJ_RS12700 PF02978 Signal peptide binding domain PAJ_RS12700 PF00448 SRP54-type protein, GTPase domain PAJ_RS12700 PF02881 SRP54-type protein, helical bundle domain PAJ_RS12705 PF01578 Cytochrome C assembly protein PAJ_RS12710 PF01595 Cyclin M transmembrane N-terminal domain PAJ_RS12710 PF03471 Transporter associated domain PAJ_RS12710 PF00571 CBS domain PAJ_RS12715 PF02664 S-Ribosylhomocysteinase (LuxS) PAJ_RS12720 PF04262 Glutamate-cysteine ligase PAJ_RS12725 PF09335 SNARE associated Golgi protein PAJ_RS12730 PF13419 Haloacid dehalogenase-like hydrolase PAJ_RS12760 PF02599 Global regulator protein family PAJ_RS12765 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PAJ_RS12765 PF02272 DHHA1 domain PAJ_RS12765 PF01411 tRNA synthetases class II (A) PAJ_RS12770 PF02631 RecX family PAJ_RS12775 PF00154 recA bacterial DNA recombination protein PAJ_RS12780 PF02464 Competence-damaged protein PAJ_RS12785 PF13649 Methyltransferase domain PAJ_RS12790 PF03831 PhnA domain PAJ_RS12790 PF08274 PhnA Zinc-Ribbon PAJ_RS12795 PF13406 Transglycosylase SLT domain PAJ_RS12800 PF01624 MutS domain I PAJ_RS12800 PF05190 MutS family domain IV PAJ_RS12800 PF05188 MutS domain II PAJ_RS12800 PF00488 MutS domain V PAJ_RS12800 PF05192 MutS domain III PAJ_RS12815 PF04542 Sigma-70 region 2 PAJ_RS12815 PF00140 Sigma-70 factor, region 1.2 PAJ_RS12815 PF04539 Sigma-70 region 3 PAJ_RS12815 PF04545 Sigma-70, region 4 PAJ_RS12820 PF01551 Peptidase family M23 PAJ_RS12820 PF01476 LysM domain PAJ_RS12830 PF01975 Survival protein SurE PAJ_RS12835 PF01142 tRNA pseudouridine synthase D (TruD) PAJ_RS12840 PF02542 YgbB family PAJ_RS12845 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PAJ_RS12850 PF04977 Septum formation initiator PAJ_RS12855 PF12084 Protein of unknown function (DUF3561) PAJ_RS12865 PF00009 Elongation factor Tu GTP binding domain PAJ_RS12870 PF01507 Phosphoadenosine phosphosulfate reductase family PAJ_RS12875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PAJ_RS12875 PF10414 Sirohaem synthase dimerisation region PAJ_RS12875 PF14824 Sirohaem biosynthesis protein central PAJ_RS12880 PF04389 Peptidase family M28 PAJ_RS12900 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS12905 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS12910 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS12915 PF00005 ABC transporter PAJ_RS12925 PF01507 Phosphoadenosine phosphosulfate reductase family PAJ_RS12930 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PAJ_RS12930 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PAJ_RS12935 PF00175 Oxidoreductase NAD-binding domain PAJ_RS12935 PF00667 FAD binding domain PAJ_RS12935 PF00258 Flavodoxin PAJ_RS12945 PF01242 6-pyruvoyl tetrahydropterin synthase PAJ_RS12950 PF00719 Inorganic pyrophosphatase PAJ_RS12955 PF04055 Radical SAM superfamily PAJ_RS12960 PF07670 Nucleoside recognition PAJ_RS12975 PF00113 Enolase, C-terminal TIM barrel domain PAJ_RS12975 PF03952 Enolase, N-terminal domain PAJ_RS12980 PF00117 Glutamine amidotransferase class-I PAJ_RS12980 PF06418 CTP synthase N-terminus PAJ_RS12985 PF03819 MazG nucleotide pyrophosphohydrolase domain PAJ_RS12990 PF02824 TGS domain PAJ_RS12990 PF04607 Region found in RelA / SpoT proteins PAJ_RS12990 PF13291 ACT domain PAJ_RS12995 PF01938 TRAM domain PAJ_RS12995 PF05958 tRNA (Uracil-5-)-methyltransferase PAJ_RS13000 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PAJ_RS13000 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS13000 PF00672 HAMP domain PAJ_RS13000 PF00072 Response regulator receiver domain PAJ_RS13000 PF01627 Hpt domain PAJ_RS13000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS13005 PF02595 Glycerate kinase family PAJ_RS13010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PAJ_RS13010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PAJ_RS13015 PF03328 HpcH/HpaI aldolase/citrate lyase family PAJ_RS13020 PF13378 Enolase C-terminal domain-like PAJ_RS13030 PF07690 Major Facilitator Superfamily PAJ_RS13035 PF08666 SAF domain PAJ_RS13035 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus PAJ_RS13040 PF00258 Flavodoxin PAJ_RS13045 PF00849 RNA pseudouridylate synthase PAJ_RS13050 PF04287 tRNA pseudouridine synthase C PAJ_RS13055 PF07348 Syd protein (SUKH-2) PAJ_RS13060 PF14489 QueF-like protein PAJ_RS13060 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PAJ_RS13065 PF03641 Possible lysine decarboxylase PAJ_RS13065 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases PAJ_RS13065 PF11892 Domain of unknown function (DUF3412) PAJ_RS13070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PAJ_RS13070 PF01367 5'-3' exonuclease, C-terminal SAM fold PAJ_RS13075 PF01728 FtsJ-like methyltransferase PAJ_RS13075 PF18125 RlmM ferredoxin-like domain PAJ_RS13080 PF04241 Protein of unknown function (DUF423) PAJ_RS13085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS13085 PF03466 LysR substrate binding domain PAJ_RS13090 PF06004 Bacterial protein of unknown function (DUF903) PAJ_RS13095 PF00266 Aminotransferase class-V PAJ_RS13100 PF02657 Fe-S metabolism associated domain PAJ_RS13105 PF00899 ThiF family PAJ_RS13110 PF03562 MltA specific insert domain PAJ_RS13110 PF06725 3D domain PAJ_RS13130 PF00291 Pyridoxal-phosphate dependent enzyme PAJ_RS13140 PF00583 Acetyltransferase (GNAT) family PAJ_RS13140 PF00696 Amino acid kinase family PAJ_RS13145 PF13538 UvrD-like helicase C-terminal domain PAJ_RS13150 PF13361 UvrD-like helicase C-terminal domain PAJ_RS13150 PF00580 UvrD/REP helicase N-terminal domain PAJ_RS13150 PF12705 PD-(D/E)XK nuclease superfamily PAJ_RS13155 PF05193 Peptidase M16 inactive domain PAJ_RS13155 PF16187 Middle or third domain of peptidase_M16 PAJ_RS13155 PF00675 Insulinase (Peptidase family M16) PAJ_RS13160 PF17946 RecC C-terminal domain PAJ_RS13175 PF07963 Prokaryotic N-terminal methylation motif PAJ_RS13180 PF07963 Prokaryotic N-terminal methylation motif PAJ_RS13185 PF00303 Thymidylate synthase PAJ_RS13190 PF01790 Prolipoprotein diacylglyceryl transferase PAJ_RS13195 PF05524 PEP-utilising enzyme, N-terminal PAJ_RS13195 PF02896 PEP-utilising enzyme, TIM barrel domain PAJ_RS13195 PF00391 PEP-utilising enzyme, mobile domain PAJ_RS13195 PF01590 GAF domain PAJ_RS13200 PF00293 NUDIX domain PAJ_RS13205 PF02976 DNA mismatch repair enzyme MutH PAJ_RS13210 PF03741 Integral membrane protein TerC family PAJ_RS13215 PF06004 Bacterial protein of unknown function (DUF903) PAJ_RS13220 PF00248 Aldo/keto reductase family PAJ_RS13225 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PAJ_RS13225 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PAJ_RS13230 PF03466 LysR substrate binding domain PAJ_RS13230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS13235 PF07690 Major Facilitator Superfamily PAJ_RS13250 PF00152 tRNA synthetases class II (D, K and N) PAJ_RS13250 PF01336 OB-fold nucleic acid binding domain PAJ_RS13255 PF17768 RecJ OB domain PAJ_RS13255 PF02272 DHHA1 domain PAJ_RS13255 PF01368 DHH family PAJ_RS13260 PF13098 Thioredoxin-like domain PAJ_RS13260 PF10411 Disulfide bond isomerase protein N-terminus PAJ_RS13265 PF02899 Phage integrase, N-terminal SAM-like domain PAJ_RS13265 PF00589 Phage integrase family PAJ_RS13270 PF00258 Flavodoxin PAJ_RS13280 PF03937 Flavinator of succinate dehydrogenase PAJ_RS13285 PF01571 Aminomethyltransferase folate-binding domain PAJ_RS13290 PF03006 Haemolysin-III related PAJ_RS13295 PF01380 SIS domain PAJ_RS13295 PF01418 Helix-turn-helix domain, rpiR family PAJ_RS13300 PF00232 Glycosyl hydrolase family 1 PAJ_RS13310 PF02347 Glycine cleavage system P-protein PAJ_RS13315 PF01597 Glycine cleavage H-protein PAJ_RS13320 PF01571 Aminomethyltransferase folate-binding domain PAJ_RS13320 PF08669 Glycine cleavage T-protein C-terminal barrel domain PAJ_RS13325 PF01494 FAD binding domain PAJ_RS13330 PF01494 FAD binding domain PAJ_RS13335 PF00557 Metallopeptidase family M24 PAJ_RS13335 PF05195 Aminopeptidase P, N-terminal domain PAJ_RS13340 PF03695 Uncharacterised protein family (UPF0149) PAJ_RS13345 PF05164 Cell division protein ZapA PAJ_RS13355 PF01812 5-formyltetrahydrofolate cyclo-ligase family PAJ_RS13360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PAJ_RS13360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAJ_RS13360 PF01842 ACT domain PAJ_RS13365 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PAJ_RS13370 PF03466 LysR substrate binding domain PAJ_RS13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS13375 PF04402 Protein of unknown function (DUF541) PAJ_RS13380 PF01810 LysE type translocator PAJ_RS13385 PF05552 Conserved TM helix PAJ_RS13385 PF00924 Mechanosensitive ion channel PAJ_RS13395 PF01116 Fructose-bisphosphate aldolase class-II PAJ_RS13400 PF00162 Phosphoglycerate kinase PAJ_RS13405 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PAJ_RS13405 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PAJ_RS13410 PF02780 Transketolase, C-terminal domain PAJ_RS13410 PF02779 Transketolase, pyrimidine binding domain PAJ_RS13410 PF00456 Transketolase, thiamine diphosphate binding domain PAJ_RS13415 PF01435 Peptidase family M48 PAJ_RS13420 PF00491 Arginase family PAJ_RS13425 PF17810 Arginine decarboxylase helical bundle domain PAJ_RS13425 PF17944 Arginine decarboxylase C-terminal helical extension PAJ_RS13425 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PAJ_RS13430 PF00438 S-adenosylmethionine synthetase, N-terminal domain PAJ_RS13430 PF02773 S-adenosylmethionine synthetase, C-terminal domain PAJ_RS13430 PF02772 S-adenosylmethionine synthetase, central domain PAJ_RS13435 PF00083 Sugar (and other) transporter PAJ_RS13440 PF02203 Tar ligand binding domain homologue PAJ_RS13440 PF00672 HAMP domain PAJ_RS13440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS13445 PF17283 SprT-like zinc ribbon domain PAJ_RS13445 PF10263 SprT-like family PAJ_RS13450 PF04231 Endonuclease I PAJ_RS13455 PF04452 RNA methyltransferase PAJ_RS13460 PF02951 Prokaryotic glutathione synthetase, N-terminal domain PAJ_RS13460 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PAJ_RS13465 PF02622 Uncharacterized ACR, COG1678 PAJ_RS13470 PF03652 Holliday junction resolvase PAJ_RS13475 PF00437 Type II/IV secretion system protein PAJ_RS13480 PF01168 Alanine racemase, N-terminal domain PAJ_RS13485 PF02325 YGGT family PAJ_RS13490 PF01725 Ham1 family PAJ_RS13495 PF06969 HemN C-terminal domain PAJ_RS13495 PF04055 Radical SAM superfamily PAJ_RS13500 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS13500 PF07702 UTRA domain PAJ_RS13505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS13515 PF03611 PTS system sugar-specific permease component PAJ_RS13520 PF11101 Protein of unknown function (DUF2884) PAJ_RS13525 PF04320 Protein with unknown function (DUF469) PAJ_RS13530 PF02390 Putative methyltransferase PAJ_RS13535 PF12833 Helix-turn-helix domain PAJ_RS13540 PF11975 Family 4 glycosyl hydrolase C-terminal domain PAJ_RS13540 PF02056 Family 4 glycosyl hydrolase PAJ_RS13550 PF00633 Helix-hairpin-helix motif PAJ_RS13550 PF00730 HhH-GPD superfamily base excision DNA repair protein PAJ_RS13550 PF14815 NUDIX domain PAJ_RS13550 PF10576 Iron-sulfur binding domain of endonuclease III PAJ_RS13555 PF04362 Bacterial Fe(2+) trafficking PAJ_RS13560 PF01464 Transglycosylase SLT domain PAJ_RS13560 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain PAJ_RS13570 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PAJ_RS13570 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain PAJ_RS13570 PF01276 Orn/Lys/Arg decarboxylase, major domain PAJ_RS13575 PF00107 Zinc-binding dehydrogenase PAJ_RS13575 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS13585 PF03551 Transcriptional regulator PadR-like family PAJ_RS13590 PF04954 Siderophore-interacting protein PAJ_RS13590 PF08021 Siderophore-interacting FAD-binding domain PAJ_RS13600 PF06445 GyrI-like small molecule binding domain PAJ_RS13600 PF12833 Helix-turn-helix domain PAJ_RS13610 PF01654 Cytochrome bd terminal oxidase subunit I PAJ_RS13615 PF01638 HxlR-like helix-turn-helix PAJ_RS13620 PF05368 NmrA-like family PAJ_RS13645 PF01204 Trehalase PAJ_RS13650 PF05974 Domain of unknown function (DUF892) PAJ_RS13655 PF05974 Domain of unknown function (DUF892) PAJ_RS13660 PF10685 Stress-induced bacterial acidophilic repeat motif PAJ_RS13670 PF00561 alpha/beta hydrolase fold PAJ_RS13675 PF13185 GAF domain PAJ_RS13675 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS13685 PF10938 YfdX protein PAJ_RS13690 PF02203 Tar ligand binding domain homologue PAJ_RS13690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS13690 PF00672 HAMP domain PAJ_RS13700 PF08447 PAS fold PAJ_RS13700 PF13426 PAS domain PAJ_RS13700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS13710 PF08447 PAS fold PAJ_RS13710 PF13426 PAS domain PAJ_RS13710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS13745 PF01638 HxlR-like helix-turn-helix PAJ_RS13750 PF07690 Major Facilitator Superfamily PAJ_RS13755 PF00892 EamA-like transporter family PAJ_RS13760 PF03466 LysR substrate binding domain PAJ_RS13760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS13770 PF07690 Major Facilitator Superfamily PAJ_RS13780 PF02371 Transposase IS116/IS110/IS902 family PAJ_RS13780 PF01548 Transposase PAJ_RS13975 PF13537 Glutamine amidotransferase domain PAJ_RS13975 PF00733 Asparagine synthase PAJ_RS13990 PF00205 Thiamine pyrophosphate enzyme, central domain PAJ_RS13990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PAJ_RS13990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PAJ_RS14000 PF00717 Peptidase S24-like PAJ_RS14005 PF13438 Domain of unknown function (DUF4113) PAJ_RS14005 PF00817 impB/mucB/samB family PAJ_RS14005 PF11799 impB/mucB/samB family C-terminal domain PAJ_RS14010 PF00589 Phage integrase family PAJ_RS14020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PAJ_RS14025 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PAJ_RS14030 PF00300 Histidine phosphatase superfamily (branch 1) PAJ_RS14035 PF03952 Enolase, N-terminal domain PAJ_RS14035 PF00113 Enolase, C-terminal TIM barrel domain PAJ_RS14045 PF01368 DHH family PAJ_RS14045 PF02833 DHHA2 domain PAJ_RS14080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PAJ_RS14095 PF16925 Tetracyclin repressor-like, C-terminal domain PAJ_RS14095 PF00440 Bacterial regulatory proteins, tetR family PAJ_RS14125 PF00589 Phage integrase family PAJ_RS14150 PF17151 Periplasmic sensor domain PAJ_RS14150 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS14155 PF03717 Penicillin-binding Protein dimerisation domain PAJ_RS14155 PF00905 Penicillin binding protein transpeptidase domain PAJ_RS14160 PF01048 Phosphorylase superfamily PAJ_RS14165 PF01676 Metalloenzyme superfamily PAJ_RS14170 PF00591 Glycosyl transferase family, a/b domain PAJ_RS14170 PF02885 Glycosyl transferase family, helical bundle domain PAJ_RS14170 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain PAJ_RS14175 PF01791 DeoC/LacD family aldolase PAJ_RS14180 PF01026 TatD related DNase PAJ_RS14185 PF01734 Patatin-like phospholipase PAJ_RS14190 PF04972 BON domain PAJ_RS14195 PF16658 Class II release factor RF3, C-terminal domain PAJ_RS14195 PF03144 Elongation factor Tu domain 2 PAJ_RS14195 PF00009 Elongation factor Tu GTP binding domain PAJ_RS14205 PF00210 Ferritin-like domain PAJ_RS14210 PF01055 Glycosyl hydrolases family 31 PAJ_RS14210 PF16338 Domain of unknown function (DUF4968) PAJ_RS14210 PF17137 Domain of unknown function (DUF5110) PAJ_RS14210 PF13802 Galactose mutarotase-like PAJ_RS14215 PF07690 Major Facilitator Superfamily PAJ_RS14220 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS14225 PF12706 Beta-lactamase superfamily domain PAJ_RS14230 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS14240 PF17912 MalK OB fold domain PAJ_RS14240 PF00005 ABC transporter PAJ_RS14270 PF00005 ABC transporter PAJ_RS14275 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS14285 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS14290 PF00296 Luciferase-like monooxygenase PAJ_RS14300 PF00296 Luciferase-like monooxygenase PAJ_RS14310 PF07687 Peptidase dimerisation domain PAJ_RS14310 PF01546 Peptidase family M20/M25/M40 PAJ_RS14315 PF10777 Inner membrane protein YlaC PAJ_RS14320 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS14320 PF00155 Aminotransferase class I and II PAJ_RS14325 PF03707 Bacterial signalling protein N terminal repeat PAJ_RS14325 PF00563 EAL domain PAJ_RS14325 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS14345 PF00577 Outer membrane usher protein PAJ_RS14345 PF13953 PapC C-terminal domain PAJ_RS14345 PF13954 PapC N-terminal domain PAJ_RS14355 PF07690 Major Facilitator Superfamily PAJ_RS14360 PF02472 Biopolymer transport protein ExbD/TolR PAJ_RS14365 PF01618 MotA/TolQ/ExbB proton channel family PAJ_RS14370 PF02378 Phosphotransferase system, EIIC PAJ_RS14370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PAJ_RS14370 PF00367 phosphotransferase system, EIIB PAJ_RS14375 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family PAJ_RS14375 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS14385 PF07690 Major Facilitator Superfamily PAJ_RS14390 PF01261 Xylose isomerase-like TIM barrel PAJ_RS14390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PAJ_RS14395 PF00775 Dioxygenase PAJ_RS14395 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal PAJ_RS14400 PF00775 Dioxygenase PAJ_RS14405 PF03466 LysR substrate binding domain PAJ_RS14405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS14410 PF12146 Serine aminopeptidase, S33 PAJ_RS14415 PF00206 Lyase PAJ_RS14415 PF10397 Adenylosuccinate lyase C-terminus PAJ_RS14420 PF02803 Thiolase, C-terminal domain PAJ_RS14420 PF00108 Thiolase, N-terminal domain PAJ_RS14425 PF01144 Coenzyme A transferase PAJ_RS14430 PF01144 Coenzyme A transferase PAJ_RS14435 PF01614 Bacterial transcriptional regulator PAJ_RS14435 PF09339 IclR helix-turn-helix domain PAJ_RS14440 PF01053 Cys/Met metabolism PLP-dependent enzyme PAJ_RS14445 PF09335 SNARE associated Golgi protein PAJ_RS14450 PF06719 AraC-type transcriptional regulator N-terminus PAJ_RS14450 PF12833 Helix-turn-helix domain PAJ_RS14455 PF00248 Aldo/keto reductase family PAJ_RS14460 PF00669 Bacterial flagellin N-terminal helical region PAJ_RS14460 PF08884 Flagellin D3 domain PAJ_RS14460 PF00700 Bacterial flagellin C-terminal helical region PAJ_RS14465 PF07731 Multicopper oxidase PAJ_RS14465 PF07732 Multicopper oxidase PAJ_RS14470 PF01553 Acyltransferase PAJ_RS14475 PF00521 DNA gyrase/topoisomerase IV, subunit A PAJ_RS14475 PF03989 DNA gyrase C-terminal domain, beta-propeller PAJ_RS14480 PF05043 Mga helix-turn-helix domain PAJ_RS14480 PF00874 PRD domain PAJ_RS14480 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS14480 PF08279 HTH domain PAJ_RS14480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS14485 PF02378 Phosphotransferase system, EIIC PAJ_RS14485 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS14485 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS14490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS14490 PF02378 Phosphotransferase system, EIIC PAJ_RS14495 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS14500 PF01116 Fructose-bisphosphate aldolase class-II PAJ_RS14505 PF01116 Fructose-bisphosphate aldolase class-II PAJ_RS14510 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS14515 PF02525 Flavodoxin-like fold PAJ_RS14520 PF03992 Antibiotic biosynthesis monooxygenase PAJ_RS14525 PF00204 DNA gyrase B PAJ_RS14525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS14525 PF01751 Toprim domain PAJ_RS14525 PF00986 DNA gyrase B subunit, carboxyl terminus PAJ_RS14530 PF05728 Uncharacterised protein family (UPF0227) PAJ_RS14535 PF00149 Calcineurin-like phosphoesterase PAJ_RS14540 PF06853 Protein of unknown function (DUF1249) PAJ_RS14545 PF00293 NUDIX domain PAJ_RS14550 PF02321 Outer membrane efflux protein PAJ_RS14555 PF06693 Protein of unknown function (DUF1190) PAJ_RS14560 PF03738 Glutathionylspermidine synthase preATP-grasp PAJ_RS14565 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PAJ_RS14570 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PAJ_RS14575 PF04380 Membrane fusogenic activity PAJ_RS14580 PF01467 Cytidylyltransferase-like PAJ_RS14580 PF00294 pfkB family carbohydrate kinase PAJ_RS14585 PF08335 GlnD PII-uridylyltransferase PAJ_RS14585 PF03710 Glutamate-ammonia ligase adenylyltransferase PAJ_RS14590 PF01928 CYTH domain PAJ_RS14595 PF08239 Bacterial SH3 domain PAJ_RS14600 PF01966 HD domain PAJ_RS14600 PF01743 Poly A polymerase head domain PAJ_RS14600 PF12627 Probable RNA and SrmB- binding site of polymerase A PAJ_RS14605 PF02673 Bacitracin resistance protein BacA PAJ_RS14610 PF02152 Dihydroneopterin aldolase PAJ_RS14615 PF02660 Glycerol-3-phosphate acyltransferase PAJ_RS14620 PF00814 Glycoprotease family PAJ_RS14625 PF01165 Ribosomal protein S21 PAJ_RS14630 PF01807 CHC2 zinc finger PAJ_RS14630 PF10410 DnaB-helicase binding domain of primase PAJ_RS14630 PF08275 DNA primase catalytic core, N-terminal domain PAJ_RS14630 PF08278 DNA primase DnaG DnaB-binding PAJ_RS14635 PF04539 Sigma-70 region 3 PAJ_RS14635 PF03979 Sigma-70 factor, region 1.1 PAJ_RS14635 PF00140 Sigma-70 factor, region 1.2 PAJ_RS14635 PF04545 Sigma-70, region 4 PAJ_RS14635 PF04546 Sigma-70, non-essential region PAJ_RS14635 PF04542 Sigma-70 region 2 PAJ_RS14640 PF03167 Uracil DNA glycosylase superfamily PAJ_RS14675 PF04606 Ogr/Delta-like zinc finger PAJ_RS14710 PF00239 Resolvase, N terminal domain PAJ_RS14710 PF02796 Helix-turn-helix domain of resolvase PAJ_RS14715 PF07484 Phage Tail Collar Domain PAJ_RS14720 PF02413 Caudovirales tail fibre assembly protein, lambda gpK PAJ_RS14725 PF07484 Phage Tail Collar Domain PAJ_RS14780 PF05840 Bacteriophage replication gene A protein (GPA) PAJ_RS14785 PF01258 Prokaryotic dksA/traR C4-type zinc finger PAJ_RS14800 PF16452 Bacteriophage CI repressor C-terminal domain PAJ_RS14800 PF07022 Bacteriophage CI repressor helix-turn-helix domain PAJ_RS14805 PF01116 Fructose-bisphosphate aldolase class-II PAJ_RS14810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS14810 PF02378 Phosphotransferase system, EIIC PAJ_RS14815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS14815 PF00381 PTS HPr component phosphorylation site PAJ_RS14815 PF00391 PEP-utilising enzyme, mobile domain PAJ_RS14815 PF02896 PEP-utilising enzyme, TIM barrel domain PAJ_RS14815 PF05524 PEP-utilising enzyme, N-terminal PAJ_RS14820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS14820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS14820 PF05043 Mga helix-turn-helix domain PAJ_RS14820 PF00874 PRD domain PAJ_RS14820 PF08279 HTH domain PAJ_RS14825 PF00916 Sulfate permease family PAJ_RS14825 PF01740 STAS domain PAJ_RS14830 PF02203 Tar ligand binding domain homologue PAJ_RS14830 PF00672 HAMP domain PAJ_RS14830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS14840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS14840 PF02203 Tar ligand binding domain homologue PAJ_RS14840 PF00672 HAMP domain PAJ_RS14855 PF10798 Biofilm development protein YmgB/AriR PAJ_RS14880 PF00563 EAL domain PAJ_RS14880 PF03707 Bacterial signalling protein N terminal repeat PAJ_RS14880 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS14880 PF13188 PAS domain PAJ_RS14890 PF00672 HAMP domain PAJ_RS14890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS14890 PF02203 Tar ligand binding domain homologue PAJ_RS14895 PF00563 EAL domain PAJ_RS14895 PF03707 Bacterial signalling protein N terminal repeat PAJ_RS14895 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS14900 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS14915 PF01820 D-ala D-ala ligase N-terminus PAJ_RS14915 PF07478 D-ala D-ala ligase C-terminus PAJ_RS14920 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS14925 PF01740 STAS domain PAJ_RS14925 PF00916 Sulfate permease family PAJ_RS14930 PF00484 Carbonic anhydrase PAJ_RS14935 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) PAJ_RS14945 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS14945 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PAJ_RS14950 PF05175 Methyltransferase small domain PAJ_RS14955 PF01863 Protein of unknown function DUF45 PAJ_RS14960 PF00654 Voltage gated chloride channel PAJ_RS14965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PAJ_RS14975 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus PAJ_RS14975 PF08666 SAF domain PAJ_RS14980 PF01232 Mannitol dehydrogenase Rossmann domain PAJ_RS14980 PF08125 Mannitol dehydrogenase C-terminal domain PAJ_RS14985 PF02614 Glucuronate isomerase PAJ_RS14990 PF07690 Major Facilitator Superfamily PAJ_RS14995 PF07729 FCD domain PAJ_RS14995 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS15000 PF09335 SNARE associated Golgi protein PAJ_RS15005 PF13721 SecD export protein N-terminal TM region PAJ_RS15010 PF06476 Protein of unknown function (DUF1090) PAJ_RS15015 PF05957 Bacterial protein of unknown function (DUF883) PAJ_RS15020 PF07332 Putative Actinobacterial Holin-X, holin superfamily III PAJ_RS15025 PF13997 YqjK-like protein PAJ_RS15030 PF07681 DoxX PAJ_RS15045 PF01370 NAD dependent epimerase/dehydratase family PAJ_RS15045 PF02911 Formyl transferase, C-terminal domain PAJ_RS15045 PF00551 Formyl transferase PAJ_RS15050 PF13409 Glutathione S-transferase, N-terminal domain PAJ_RS15055 PF03222 Tryptophan/tyrosine permease family PAJ_RS15060 PF00291 Pyridoxal-phosphate dependent enzyme PAJ_RS15065 PF04349 Periplasmic glucan biosynthesis protein, MdoG PAJ_RS15075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PAJ_RS15080 PF04348 LppC putative lipoprotein PAJ_RS15085 PF02021 Uncharacterised protein family UPF0102 PAJ_RS15090 PF13580 SIS domain PAJ_RS15095 PF04972 BON domain PAJ_RS15100 PF02678 Pirin PAJ_RS15100 PF17954 Quercetinase C-terminal cupin domain PAJ_RS15105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS15105 PF03466 LysR substrate binding domain PAJ_RS15110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS15115 PF07071 KDGP aldolase PAJ_RS15120 PF03841 L-seryl-tRNA selenium transferase PAJ_RS15125 PF01979 Amidohydrolase family PAJ_RS15170 PF01055 Glycosyl hydrolases family 31 PAJ_RS15175 PF01263 Aldose 1-epimerase PAJ_RS15185 PF01791 DeoC/LacD family aldolase PAJ_RS15190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PAJ_RS15190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PAJ_RS15195 PF00294 pfkB family carbohydrate kinase PAJ_RS15200 PF00455 DeoR C terminal sensor domain PAJ_RS15200 PF08220 DeoR-like helix-turn-helix domain PAJ_RS15205 PF07361 Cytochrome b562 PAJ_RS15210 PF01523 Putative modulator of DNA gyrase PAJ_RS15215 PF04751 Protein of unknown function (DUF615) PAJ_RS15220 PF08245 Mur ligase middle domain PAJ_RS15220 PF01225 Mur ligase family, catalytic domain PAJ_RS15220 PF02875 Mur ligase family, glutamate ligase domain PAJ_RS15225 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PAJ_RS15230 PF00672 HAMP domain PAJ_RS15230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS15230 PF02203 Tar ligand binding domain homologue PAJ_RS15240 PF04284 Protein of unknown function (DUF441) PAJ_RS15245 PF00719 Inorganic pyrophosphatase PAJ_RS15255 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like PAJ_RS15260 PF04357 TamB, inner membrane protein subunit of TAM complex PAJ_RS15265 PF01103 Surface antigen PAJ_RS15265 PF07244 Surface antigen variable number repeat PAJ_RS15265 PF17243 POTRA domain TamA domain 1 PAJ_RS15270 PF03471 Transporter associated domain PAJ_RS15270 PF01595 Cyclin M transmembrane N-terminal domain PAJ_RS15270 PF00571 CBS domain PAJ_RS15275 PF06526 Protein of unknown function (DUF1107) PAJ_RS15280 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) PAJ_RS15285 PF00459 Inositol monophosphatase family PAJ_RS15290 PF00149 Calcineurin-like phosphoesterase PAJ_RS15290 PF02872 5'-nucleotidase, C-terminal domain PAJ_RS15295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PAJ_RS15295 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PAJ_RS15300 PF04225 Opacity-associated protein A LysM-like domain PAJ_RS15300 PF08525 Opacity-associated protein A N-terminal motif PAJ_RS15310 PF03948 Ribosomal protein L9, C-terminal domain PAJ_RS15310 PF01281 Ribosomal protein L9, N-terminal domain PAJ_RS15315 PF01084 Ribosomal protein S18 PAJ_RS15320 PF00436 Single-strand binding protein family PAJ_RS15325 PF01250 Ribosomal protein S6 PAJ_RS15330 PF00326 Prolyl oligopeptidase family PAJ_RS15335 PF00672 HAMP domain PAJ_RS15335 PF02203 Tar ligand binding domain homologue PAJ_RS15335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS15340 PF07338 Protein of unknown function (DUF1471) PAJ_RS15345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PAJ_RS15345 PF02770 Acyl-CoA dehydrogenase, middle domain PAJ_RS15345 PF18158 Adaptive response protein AidB N-terminal domain PAJ_RS15355 PF00773 RNB domain PAJ_RS15355 PF08206 Ribonuclease B OB domain PAJ_RS15355 PF08461 Ribonuclease R winged-helix domain PAJ_RS15355 PF17876 Cold shock domain PAJ_RS15355 PF00575 S1 RNA binding domain PAJ_RS15360 PF02082 Transcriptional regulator PAJ_RS15365 PF00709 Adenylosuccinate synthetase PAJ_RS15370 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) PAJ_RS15375 PF01145 SPFH domain / Band 7 family PAJ_RS15380 PF01145 SPFH domain / Band 7 family PAJ_RS15380 PF12221 Bacterial membrane protein N terminal PAJ_RS15385 PF13167 GTP-binding GTPase N-terminal PAJ_RS15385 PF01926 50S ribosome-binding GTPase PAJ_RS15385 PF16360 GTP-binding GTPase Middle Region PAJ_RS15390 PF17209 Hfq protein PAJ_RS15400 PF01119 DNA mismatch repair protein, C-terminal domain PAJ_RS15400 PF08676 MutL C terminal dimerisation domain PAJ_RS15405 PF01520 N-acetylmuramoyl-L-alanine amidase PAJ_RS15410 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PAJ_RS15415 PF03853 YjeF-related protein N-terminus PAJ_RS15415 PF01256 Carbohydrate kinase PAJ_RS15420 PF08331 Domain of unknown function (DUF1730) PAJ_RS15440 PF00929 Exonuclease PAJ_RS15450 PF02666 Phosphatidylserine decarboxylase PAJ_RS15455 PF00924 Mechanosensitive ion channel PAJ_RS15455 PF12795 Mechanosensitive ion channel porin domain PAJ_RS15455 PF12794 Mechanosensitive ion channel inner membrane domain 1 PAJ_RS15460 PF00056 lactate/malate dehydrogenase, NAD binding domain PAJ_RS15460 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PAJ_RS15465 PF02863 Arginine repressor, C-terminal domain PAJ_RS15465 PF01316 Arginine repressor, DNA binding domain PAJ_RS15470 PF07338 Protein of unknown function (DUF1471) PAJ_RS15480 PF07338 Protein of unknown function (DUF1471) PAJ_RS15485 PF04754 Putative transposase, YhgA-like PAJ_RS15490 PF01337 Barstar (barnase inhibitor) PAJ_RS15495 PF00171 Aldehyde dehydrogenase family PAJ_RS15500 PF04632 Fusaric acid resistance protein family PAJ_RS15505 PF13533 Biotin-lipoyl like PAJ_RS15510 PF07869 Protein of unknown function (DUF1656) PAJ_RS15515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS15515 PF03466 LysR substrate binding domain PAJ_RS15520 PF01523 Putative modulator of DNA gyrase PAJ_RS15525 PF13502 AsmA-like C-terminal region PAJ_RS15525 PF13116 Protein of unknown function PAJ_RS15530 PF00575 S1 RNA binding domain PAJ_RS15530 PF10150 Ribonuclease E/G family PAJ_RS15535 PF02545 Maf-like protein PAJ_RS15540 PF04093 rod shape-determining protein MreD PAJ_RS15545 PF04085 rod shape-determining protein MreC PAJ_RS15555 PF17157 Gammaproteobacterial periplasmic sensor domain PAJ_RS15555 PF00563 EAL domain PAJ_RS15555 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS15560 PF00174 Oxidoreductase molybdopterin binding domain PAJ_RS15565 PF01794 Ferric reductase like transmembrane component PAJ_RS15570 PF01220 Dehydroquinase class II PAJ_RS15575 PF00364 Biotin-requiring enzyme PAJ_RS15580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PAJ_RS15580 PF02785 Biotin carboxylase C-terminal domain PAJ_RS15580 PF00289 Biotin carboxylase, N-terminal domain PAJ_RS15585 PF06196 Protein of unknown function (DUF997) PAJ_RS15590 PF00474 Sodium:solute symporter family PAJ_RS15600 PF01207 Dihydrouridine synthase (Dus) PAJ_RS15605 PF02954 Bacterial regulatory protein, Fis family PAJ_RS15610 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS15615 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS15620 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS15625 PF00005 ABC transporter PAJ_RS15660 PF00132 Bacterial transferase hexapeptide (six repeats) PAJ_RS15665 PF18317 Shikimate 5'-dehydrogenase C-terminal domain PAJ_RS15665 PF08501 Shikimate dehydrogenase substrate binding domain PAJ_RS15665 PF01488 Shikimate / quinate 5-dehydrogenase PAJ_RS15670 PF01300 Telomere recombination PAJ_RS15675 PF01396 Topoisomerase DNA binding C4 zinc finger PAJ_RS15680 PF04361 Protein of unknown function (DUF494) PAJ_RS15685 PF17782 DprA winged helix domain PAJ_RS15685 PF02481 DNA recombination-mediator protein A PAJ_RS15690 PF01327 Polypeptide deformylase PAJ_RS15695 PF02911 Formyl transferase, C-terminal domain PAJ_RS15695 PF00551 Formyl transferase PAJ_RS15700 PF01189 16S rRNA methyltransferase RsmB/F PAJ_RS15700 PF01029 NusB family PAJ_RS15705 PF02254 TrkA-N domain PAJ_RS15705 PF02080 TrkA-C domain PAJ_RS15710 PF01741 Large-conductance mechanosensitive channel, MscL PAJ_RS15715 PF03889 Alternative ribosome-rescue factor A PAJ_RS15720 PF09350 Domain of unknown function (DUF1992) PAJ_RS15725 PF01196 Ribosomal protein L17 PAJ_RS15730 PF01000 RNA polymerase Rpb3/RpoA insert domain PAJ_RS15730 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PAJ_RS15730 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PAJ_RS15740 PF00411 Ribosomal protein S11 PAJ_RS15745 PF00416 Ribosomal protein S13/S18 PAJ_RS15750 PF00444 Ribosomal protein L36 PAJ_RS15755 PF00344 SecY translocase PAJ_RS15760 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PAJ_RS15765 PF00327 Ribosomal protein L30p/L7e PAJ_RS15770 PF00333 Ribosomal protein S5, N-terminal domain PAJ_RS15770 PF03719 Ribosomal protein S5, C-terminal domain PAJ_RS15775 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PAJ_RS15780 PF00347 Ribosomal protein L6 PAJ_RS15785 PF00410 Ribosomal protein S8 PAJ_RS15790 PF00253 Ribosomal protein S14p/S29e PAJ_RS15795 PF00281 Ribosomal protein L5 PAJ_RS15795 PF00673 ribosomal L5P family C-terminus PAJ_RS15800 PF00467 KOW motif PAJ_RS15800 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PAJ_RS15805 PF00238 Ribosomal protein L14p/L23e PAJ_RS15810 PF00366 Ribosomal protein S17 PAJ_RS15815 PF00831 Ribosomal L29 protein PAJ_RS15820 PF00252 Ribosomal protein L16p/L10e PAJ_RS15825 PF00189 Ribosomal protein S3, C-terminal domain PAJ_RS15825 PF07650 KH domain PAJ_RS15830 PF00237 Ribosomal protein L22p/L17e PAJ_RS15835 PF00203 Ribosomal protein S19 PAJ_RS15840 PF00181 Ribosomal Proteins L2, RNA binding domain PAJ_RS15840 PF03947 Ribosomal Proteins L2, C-terminal domain PAJ_RS15845 PF00276 Ribosomal protein L23 PAJ_RS15850 PF00573 Ribosomal protein L4/L1 family PAJ_RS15855 PF00297 Ribosomal protein L3 PAJ_RS15860 PF00338 Ribosomal protein S10p/S20e PAJ_RS15865 PF06750 Bacterial Peptidase A24 N-terminal domain PAJ_RS15865 PF01478 Type IV leader peptidase family PAJ_RS15870 PF00210 Ferritin-like domain PAJ_RS15880 PF03143 Elongation factor Tu C-terminal domain PAJ_RS15880 PF03144 Elongation factor Tu domain 2 PAJ_RS15880 PF00009 Elongation factor Tu GTP binding domain PAJ_RS15885 PF03764 Elongation factor G, domain IV PAJ_RS15885 PF14492 Elongation Factor G, domain II PAJ_RS15885 PF00009 Elongation factor Tu GTP binding domain PAJ_RS15885 PF03144 Elongation factor Tu domain 2 PAJ_RS15885 PF00679 Elongation factor G C-terminus PAJ_RS15890 PF00177 Ribosomal protein S7p/S5e PAJ_RS15895 PF00164 Ribosomal protein S12/S23 PAJ_RS15900 PF04077 DsrH like protein PAJ_RS15905 PF02635 DsrE/DsrF-like family PAJ_RS15910 PF02635 DsrE/DsrF-like family PAJ_RS15915 PF13309 HTH domain PAJ_RS15915 PF08348 YheO-like PAS domain PAJ_RS15920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PAJ_RS15920 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PAJ_RS15925 PF04102 SlyX PAJ_RS15930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PAJ_RS15935 PF09526 Probable metal-binding protein (DUF2387) PAJ_RS15940 PF00999 Sodium/hydrogen exchanger family PAJ_RS15940 PF02254 TrkA-N domain PAJ_RS15945 PF02525 Flavodoxin-like fold PAJ_RS15950 PF12848 ABC transporter PAJ_RS15950 PF00005 ABC transporter PAJ_RS15955 PF02668 Taurine catabolism dioxygenase TauD, TfdA family PAJ_RS15960 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS15965 PF00005 ABC transporter PAJ_RS15970 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PAJ_RS15975 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS15985 PF00561 alpha/beta hydrolase fold PAJ_RS15990 PF06794 Uncharacterised protein family (UPF0270) PAJ_RS15995 PF00485 Phosphoribulokinase / Uridine kinase family PAJ_RS16000 PF02566 OsmC-like protein PAJ_RS16005 PF00027 Cyclic nucleotide-binding domain PAJ_RS16005 PF13545 Crp-like helix-turn-helix domain PAJ_RS16010 PF12805 FUSC-like inner membrane protein yccS PAJ_RS16015 PF00202 Aminotransferase class-III PAJ_RS16020 PF00117 Glutamine amidotransferase class-I PAJ_RS16025 PF02661 Fic/DOC family PAJ_RS16030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PAJ_RS16035 PF07690 Major Facilitator Superfamily PAJ_RS16040 PF07969 Amidohydrolase family PAJ_RS16045 PF00579 tRNA synthetases class I (W and Y) PAJ_RS16050 PF13419 Haloacid dehalogenase-like hydrolase PAJ_RS16055 PF00834 Ribulose-phosphate 3 epimerase family PAJ_RS16060 PF02086 D12 class N6 adenine-specific DNA methyltransferase PAJ_RS16065 PF05036 Sporulation related domain PAJ_RS16070 PF01761 3-dehydroquinate synthase PAJ_RS16075 PF01202 Shikimate kinase PAJ_RS16080 PF00263 Bacterial type II and III secretion system protein PAJ_RS16080 PF03958 Bacterial type II/III secretion system short domain PAJ_RS16105 PF17092 Penicillin-binding protein OB-like domain PAJ_RS16105 PF00905 Penicillin binding protein transpeptidase domain PAJ_RS16105 PF00912 Transglycosylase PAJ_RS16110 PF00293 NUDIX domain PAJ_RS16115 PF07095 Intracellular growth attenuator protein IgaA PAJ_RS16120 PF13419 Haloacid dehalogenase-like hydrolase PAJ_RS16125 PF01479 S4 domain PAJ_RS16130 PF01430 Hsp33 protein PAJ_RS16135 PF01293 Phosphoenolpyruvate carboxykinase PAJ_RS16140 PF00672 HAMP domain PAJ_RS16140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS16140 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS16145 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS16145 PF00072 Response regulator receiver domain PAJ_RS16155 PF01272 Transcription elongation factor, GreA/GreB, C-term PAJ_RS16155 PF03449 Transcription elongation factor, N-terminal PAJ_RS16160 PF00575 S1 RNA binding domain PAJ_RS16160 PF16921 Tex protein YqgF-like domain PAJ_RS16160 PF09371 Tex-like protein N-terminal domain PAJ_RS16160 PF17674 HHH domain PAJ_RS16165 PF00128 Alpha amylase, catalytic domain PAJ_RS16175 PF00561 alpha/beta hydrolase fold PAJ_RS16180 PF00156 Phosphoribosyl transferase domain PAJ_RS16185 PF01106 NifU-like domain PAJ_RS16185 PF01521 Iron-sulphur cluster biosynthesis PAJ_RS16190 PF02446 4-alpha-glucanotransferase PAJ_RS16195 PF00343 Carbohydrate phosphorylase PAJ_RS16200 PF00455 DeoR C terminal sensor domain PAJ_RS16200 PF08220 DeoR-like helix-turn-helix domain PAJ_RS16205 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease PAJ_RS16205 PF01694 Rhomboid family PAJ_RS16210 PF00581 Rhodanese-like domain PAJ_RS16215 PF16901 C-terminal domain of alpha-glycerophosphate oxidase PAJ_RS16215 PF01266 FAD dependent oxidoreductase PAJ_RS16225 PF00343 Carbohydrate phosphorylase PAJ_RS16230 PF00534 Glycosyl transferases group 1 PAJ_RS16230 PF08323 Starch synthase catalytic domain PAJ_RS16235 PF00483 Nucleotidyl transferase PAJ_RS16240 PF18390 Glycogen debranching enzyme C-terminal domain PAJ_RS16240 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PAJ_RS16240 PF00128 Alpha amylase, catalytic domain PAJ_RS16245 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PAJ_RS16245 PF02806 Alpha amylase, C-terminal all-beta domain PAJ_RS16245 PF00128 Alpha amylase, catalytic domain PAJ_RS16250 PF02774 Semialdehyde dehydrogenase, dimerisation domain PAJ_RS16250 PF01118 Semialdehyde dehydrogenase, NAD binding domain PAJ_RS16255 PF01914 MarC family integral membrane protein PAJ_RS16260 PF02447 GntP family permease PAJ_RS16265 PF01202 Shikimate kinase PAJ_RS16270 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family PAJ_RS16270 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS16275 PF17954 Quercetinase C-terminal cupin domain PAJ_RS16275 PF02678 Pirin PAJ_RS16280 PF00583 Acetyltransferase (GNAT) family PAJ_RS16295 PF03009 Glycerophosphoryl diester phosphodiesterase family PAJ_RS16300 PF00005 ABC transporter PAJ_RS16300 PF17912 MalK OB fold domain PAJ_RS16305 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS16310 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS16315 PF13416 Bacterial extracellular solute-binding protein PAJ_RS16320 PF00005 ABC transporter PAJ_RS16325 PF12399 Branched-chain amino acid ATP-binding cassette transporter PAJ_RS16325 PF00005 ABC transporter PAJ_RS16330 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS16330 PF11862 Domain of unknown function (DUF3382) PAJ_RS16335 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS16340 PF13458 Periplasmic binding protein PAJ_RS16350 PF12568 Acetyltransferase (GNAT) domain, PanZ PAJ_RS16355 PF00140 Sigma-70 factor, region 1.2 PAJ_RS16355 PF04545 Sigma-70, region 4 PAJ_RS16355 PF04542 Sigma-70 region 2 PAJ_RS16360 PF02687 FtsX-like permease family PAJ_RS16360 PF18075 FtsX extracellular domain PAJ_RS16365 PF00005 ABC transporter PAJ_RS16370 PF02881 SRP54-type protein, helical bundle domain PAJ_RS16370 PF02881 SRP54-type protein, helical bundle domain PAJ_RS16370 PF00448 SRP54-type protein, GTPase domain PAJ_RS16370 PF00448 SRP54-type protein, GTPase domain PAJ_RS16380 PF06611 Protein of unknown function (DUF1145) PAJ_RS16390 PF07947 YhhN family PAJ_RS16395 PF00403 Heavy-metal-associated domain PAJ_RS16400 PF01206 Sulfurtransferase TusA PAJ_RS16405 PF02592 Putative vitamin uptake transporter PAJ_RS16410 PF08786 DcrB PAJ_RS16415 PF00294 pfkB family carbohydrate kinase PAJ_RS16420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PAJ_RS16420 PF00205 Thiamine pyrophosphate enzyme, central domain PAJ_RS16420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PAJ_RS16425 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PAJ_RS16425 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PAJ_RS16430 PF01261 Xylose isomerase-like TIM barrel PAJ_RS16440 PF04962 KduI/IolB family PAJ_RS16445 PF00171 Aldehyde dehydrogenase family PAJ_RS16450 PF00860 Permease family PAJ_RS16455 PF01594 AI-2E family transporter PAJ_RS16460 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS16460 PF07729 FCD domain PAJ_RS16465 PF03786 D-mannonate dehydratase (UxuA) PAJ_RS16470 PF00563 EAL domain PAJ_RS16470 PF12792 CSS motif domain associated with EAL PAJ_RS16480 PF08946 Osmosensory transporter coiled coil PAJ_RS16480 PF00083 Sugar (and other) transporter PAJ_RS16485 PF00490 Delta-aminolevulinic acid dehydratase PAJ_RS16490 PF12833 Helix-turn-helix domain PAJ_RS16495 PF02677 Epoxyqueuosine reductase QueH PAJ_RS16520 PF01427 D-ala-D-ala dipeptidase PAJ_RS16525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS16530 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS16535 PF12911 N-terminal TM domain of oligopeptide transport permease C PAJ_RS16535 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS16540 PF00005 ABC transporter PAJ_RS16540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS16545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS16545 PF00005 ABC transporter PAJ_RS16550 PF01266 FAD dependent oxidoreductase PAJ_RS16560 PF01384 Phosphate transporter family PAJ_RS16565 PF10625 Universal stress protein B (UspB) PAJ_RS16570 PF00582 Universal stress protein family PAJ_RS16575 PF04445 Putative SAM-dependent methyltransferase PAJ_RS16580 PF01432 Peptidase family M3 PAJ_RS16585 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PAJ_RS16595 PF12706 Beta-lactamase superfamily domain PAJ_RS16600 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS16600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PAJ_RS16605 PF00480 ROK family PAJ_RS16610 PF00459 Inositol monophosphatase family PAJ_RS16615 PF08402 TOBE domain PAJ_RS16615 PF00005 ABC transporter PAJ_RS16635 PF03009 Glycerophosphoryl diester phosphodiesterase family PAJ_RS16640 PF00267 Gram-negative porin PAJ_RS16660 PF07690 Major Facilitator Superfamily PAJ_RS16665 PF03466 LysR substrate binding domain PAJ_RS16665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS16670 PF03350 Uncharacterized protein family, UPF0114 PAJ_RS16680 PF02669 K+-transporting ATPase, c chain PAJ_RS16690 PF03814 Potassium-transporting ATPase A subunit PAJ_RS16695 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) PAJ_RS16700 PF11871 Domain of unknown function (DUF3391) PAJ_RS16700 PF01966 HD domain PAJ_RS16710 PF00005 ABC transporter PAJ_RS16710 PF00664 ABC transporter transmembrane region PAJ_RS16720 PF02230 Phospholipase/Carboxylesterase PAJ_RS16725 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PAJ_RS16735 PF01156 Inosine-uridine preferring nucleoside hydrolase PAJ_RS16740 PF00107 Zinc-binding dehydrogenase PAJ_RS16740 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS16745 PF07729 FCD domain PAJ_RS16745 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS16750 PF07690 Major Facilitator Superfamily PAJ_RS16760 PF00561 alpha/beta hydrolase fold PAJ_RS16765 PF01557 Fumarylacetoacetate (FAA) hydrolase family PAJ_RS16770 PF02659 Putative manganese efflux pump PAJ_RS16775 PF06643 Protein of unknown function (DUF1158) PAJ_RS16780 PF06039 Malate:quinone oxidoreductase (Mqo) PAJ_RS16790 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS16790 PF00155 Aminotransferase class I and II PAJ_RS16795 PF00043 Glutathione S-transferase, C-terminal domain PAJ_RS16795 PF13417 Glutathione S-transferase, N-terminal domain PAJ_RS16800 PF02567 Phenazine biosynthesis-like protein PAJ_RS16810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS16810 PF03466 LysR substrate binding domain PAJ_RS16815 PF03631 Virulence factor BrkB PAJ_RS16820 PF07690 Major Facilitator Superfamily PAJ_RS16820 PF00083 Sugar (and other) transporter PAJ_RS16825 PF03466 LysR substrate binding domain PAJ_RS16825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS16830 PF00497 Bacterial extracellular solute-binding proteins, family 3 PAJ_RS16840 PF10014 2OG-Fe dioxygenase PAJ_RS16850 PF07478 D-ala D-ala ligase C-terminus PAJ_RS16850 PF01820 D-ala D-ala ligase N-terminus PAJ_RS16860 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PAJ_RS16860 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PAJ_RS16865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS16865 PF03466 LysR substrate binding domain PAJ_RS16870 PF00291 Pyridoxal-phosphate dependent enzyme PAJ_RS16870 PF00585 C-terminal regulatory domain of Threonine dehydratase PAJ_RS16875 PF00920 Dehydratase family PAJ_RS16880 PF01063 Amino-transferase class IV PAJ_RS16890 PF00205 Thiamine pyrophosphate enzyme, central domain PAJ_RS16890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PAJ_RS16890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PAJ_RS16895 PF01078 Magnesium chelatase, subunit ChlI PAJ_RS16895 PF13335 Magnesium chelatase, subunit ChlI C-terminal PAJ_RS16900 PF04219 Protein of unknown function, DUF PAJ_RS16905 PF03466 LysR substrate binding domain PAJ_RS16905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS16955 PF07715 TonB-dependent Receptor Plug Domain PAJ_RS16955 PF00593 TonB dependent receptor PAJ_RS16960 PF05958 tRNA (Uracil-5-)-methyltransferase PAJ_RS16965 PF07226 Protein of unknown function (DUF1422) PAJ_RS16970 PF00440 Bacterial regulatory proteins, tetR family PAJ_RS16975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PAJ_RS16975 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS16980 PF03466 LysR substrate binding domain PAJ_RS16980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS16985 PF00206 Lyase PAJ_RS16985 PF14698 Argininosuccinate lyase C-terminal PAJ_RS16990 PF00764 Arginosuccinate synthase PAJ_RS16995 PF00696 Amino acid kinase family PAJ_RS17000 PF02774 Semialdehyde dehydrogenase, dimerisation domain PAJ_RS17000 PF01118 Semialdehyde dehydrogenase, NAD binding domain PAJ_RS17005 PF01546 Peptidase family M20/M25/M40 PAJ_RS17005 PF07687 Peptidase dimerisation domain PAJ_RS17010 PF00311 Phosphoenolpyruvate carboxylase PAJ_RS17015 PF00672 HAMP domain PAJ_RS17015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS17015 PF02203 Tar ligand binding domain homologue PAJ_RS17020 PF02219 Methylenetetrahydrofolate reductase PAJ_RS17025 PF00696 Amino acid kinase family PAJ_RS17025 PF00742 Homoserine dehydrogenase PAJ_RS17025 PF03447 Homoserine dehydrogenase, NAD binding domain PAJ_RS17030 PF01053 Cys/Met metabolism PLP-dependent enzyme PAJ_RS17035 PF01340 Met Apo-repressor, MetJ PAJ_RS17040 PF01197 Ribosomal protein L31 PAJ_RS17045 PF00271 Helicase conserved C-terminal domain PAJ_RS17045 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PAJ_RS17045 PF17764 3′ DNA-binding domain (3′BD) PAJ_RS17045 PF18074 Primosomal protein N C-terminal domain PAJ_RS17045 PF00270 DEAD/DEAH box helicase PAJ_RS17050 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS17055 PF05036 Sporulation related domain PAJ_RS17060 PF00227 Proteasome subunit PAJ_RS17065 PF00004 ATPase family associated with various cellular activities (AAA) PAJ_RS17065 PF07724 AAA domain (Cdc48 subfamily) PAJ_RS17065 PF10431 C-terminal, D2-small domain, of ClpB protein PAJ_RS17070 PF03737 Aldolase/RraA PAJ_RS17075 PF06005 Cell division protein ZapB PAJ_RS17080 PF00230 Major intrinsic protein PAJ_RS17085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PAJ_RS17085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PAJ_RS17090 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded PAJ_RS17095 PF07690 Major Facilitator Superfamily PAJ_RS17100 PF00175 Oxidoreductase NAD-binding domain PAJ_RS17100 PF00970 Oxidoreductase FAD-binding domain PAJ_RS17105 PF05656 Protein of unknown function (DUF805) PAJ_RS17110 PF07305 Protein of unknown function (DUF1454) PAJ_RS17115 PF00121 Triosephosphate isomerase PAJ_RS17120 PF02611 CDP-diacylglycerol pyrophosphatase PAJ_RS17130 PF00365 Phosphofructokinase PAJ_RS17135 PF01545 Cation efflux family PAJ_RS17135 PF16916 Dimerisation domain of Zinc Transporter PAJ_RS17140 PF10685 Stress-induced bacterial acidophilic repeat motif PAJ_RS17145 PF07813 LTXXQ motif family protein PAJ_RS17150 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS17150 PF00072 Response regulator receiver domain PAJ_RS17155 PF00672 HAMP domain PAJ_RS17155 PF16527 Two-component sensor protein CpxA, periplasmic domain PAJ_RS17155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS17155 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS17160 PF00588 SpoU rRNA Methylase family PAJ_RS17165 PF06426 Serine acetyltransferase, N-terminal PAJ_RS17165 PF00132 Bacterial transferase hexapeptide (six repeats) PAJ_RS17170 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PAJ_RS17170 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PAJ_RS17175 PF02556 Preprotein translocase subunit SecB PAJ_RS17180 PF00462 Glutaredoxin PAJ_RS17185 PF00581 Rhodanese-like domain PAJ_RS17190 PF01551 Peptidase family M23 PAJ_RS17195 PF04748 Divergent polysaccharide deacetylase PAJ_RS17200 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS17200 PF00107 Zinc-binding dehydrogenase PAJ_RS17205 PF00155 Aminotransferase class I and II PAJ_RS17210 PF01370 NAD dependent epimerase/dehydratase family PAJ_RS17215 PF01075 Glycosyltransferase family 9 (heptosyltransferase) PAJ_RS17220 PF01075 Glycosyltransferase family 9 (heptosyltransferase) PAJ_RS17225 PF00534 Glycosyl transferases group 1 PAJ_RS17230 PF04932 O-Antigen ligase PAJ_RS17235 PF01501 Glycosyl transferase family 8 PAJ_RS17235 PF00535 Glycosyl transferase family 2 PAJ_RS17245 PF13439 Glycosyltransferase Family 4 PAJ_RS17245 PF00534 Glycosyl transferases group 1 PAJ_RS17255 PF00535 Glycosyl transferase family 2 PAJ_RS17260 PF01075 Glycosyltransferase family 9 (heptosyltransferase) PAJ_RS17265 PF13439 Glycosyltransferase Family 4 PAJ_RS17265 PF00534 Glycosyl transferases group 1 PAJ_RS17270 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PAJ_RS17275 PF00535 Glycosyl transferase family 2 PAJ_RS17280 PF01467 Cytidylyltransferase-like PAJ_RS17285 PF06827 Zinc finger found in FPG and IleRS PAJ_RS17285 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PAJ_RS17285 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PAJ_RS17290 PF00471 Ribosomal protein L33 PAJ_RS17295 PF00830 Ribosomal L28 family PAJ_RS17300 PF04002 RadC-like JAB domain PAJ_RS17305 PF02441 Flavoprotein PAJ_RS17305 PF04127 DNA / pantothenate metabolism flavoprotein PAJ_RS17310 PF00692 dUTPase PAJ_RS17315 PF00440 Bacterial regulatory proteins, tetR family PAJ_RS17320 PF00156 Phosphoribosyl transferase domain PAJ_RS17325 PF01138 3' exoribonuclease family, domain 1 PAJ_RS17325 PF03725 3' exoribonuclease family, domain 2 PAJ_RS17330 PF07670 Nucleoside recognition PAJ_RS17330 PF07662 Na+ dependent nucleoside transporter C-terminus PAJ_RS17330 PF01773 Na+ dependent nucleoside transporter N-terminus PAJ_RS17340 PF08340 Domain of unknown function (DUF1732) PAJ_RS17340 PF03755 YicC-like family, N-terminal region PAJ_RS17355 PF00069 Protein kinase domain PAJ_RS17355 PF03793 PASTA domain PAJ_RS17360 PF03793 PASTA domain PAJ_RS17360 PF00069 Protein kinase domain PAJ_RS17370 PF03279 Bacterial lipid A biosynthesis acyltransferase PAJ_RS17380 PF03458 UPF0126 domain PAJ_RS17385 PF01653 NAD-dependent DNA ligase adenylation domain PAJ_RS17385 PF03120 NAD-dependent DNA ligase OB-fold domain PAJ_RS17390 PF00625 Guanylate kinase PAJ_RS17395 PF01192 RNA polymerase Rpb6 PAJ_RS17400 PF02824 TGS domain PAJ_RS17400 PF04607 Region found in RelA / SpoT proteins PAJ_RS17400 PF13291 ACT domain PAJ_RS17405 PF12105 SpoU, rRNA methylase, C-terminal PAJ_RS17405 PF00588 SpoU rRNA Methylase family PAJ_RS17410 PF00271 Helicase conserved C-terminal domain PAJ_RS17410 PF00270 DEAD/DEAH box helicase PAJ_RS17410 PF17191 RecG wedge domain PAJ_RS17415 PF00860 Permease family PAJ_RS17420 PF05170 AsmA family PAJ_RS17425 PF09500 Putative thioesterase (yiiD_Cterm) PAJ_RS17425 PF00583 Acetyltransferase (GNAT) family PAJ_RS17430 PF02580 D-Tyr-tRNA(Tyr) deacylase PAJ_RS17435 PF03631 Virulence factor BrkB PAJ_RS17440 PF13419 Haloacid dehalogenase-like hydrolase PAJ_RS17445 PF00009 Elongation factor Tu GTP binding domain PAJ_RS17445 PF00679 Elongation factor G C-terminus PAJ_RS17445 PF03144 Elongation factor Tu domain 2 PAJ_RS17450 PF03951 Glutamine synthetase, beta-Grasp domain PAJ_RS17450 PF00120 Glutamine synthetase, catalytic domain PAJ_RS17455 PF00989 PAS fold PAJ_RS17455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS17455 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS17460 PF00158 Sigma-54 interaction domain PAJ_RS17460 PF02954 Bacterial regulatory protein, Fis family PAJ_RS17460 PF00072 Response regulator receiver domain PAJ_RS17465 PF04055 Radical SAM superfamily PAJ_RS17465 PF06969 HemN C-terminal domain PAJ_RS17470 PF04220 Der GTPase activator (YihI) PAJ_RS17475 PF01926 50S ribosome-binding GTPase PAJ_RS17480 PF01612 3'-5' exonuclease PAJ_RS17480 PF00476 DNA polymerase family A PAJ_RS17480 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PAJ_RS17480 PF01367 5'-3' exonuclease, C-terminal SAM fold PAJ_RS17485 PF01323 DSBA-like thioredoxin domain PAJ_RS17490 PF01636 Phosphotransferase enzyme family PAJ_RS17495 PF06288 Protein of unknown function (DUF1040) PAJ_RS17500 PF12804 MobA-like NTP transferase domain PAJ_RS17505 PF03205 Molybdopterin guanine dinucleotide synthesis protein B PAJ_RS17530 PF07690 Major Facilitator Superfamily PAJ_RS17535 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS17540 PF00294 pfkB family carbohydrate kinase PAJ_RS17545 PF13407 Periplasmic binding protein domain PAJ_RS17550 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS17555 PF00005 ABC transporter PAJ_RS17560 PF05025 RbsD / FucU transport protein family PAJ_RS17565 PF04076 Bacterial OB fold (BOF) protein PAJ_RS17570 PF00072 Response regulator receiver domain PAJ_RS17570 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS17575 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS17575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS17575 PF08521 Two-component sensor kinase N-terminal PAJ_RS17580 PF02705 K+ potassium transporter PAJ_RS17585 PF17868 AAA lid domain PAJ_RS17585 PF07728 AAA domain (dynein-related subfamily) PAJ_RS17585 PF12592 Protein of unknown function (DUF3763) PAJ_RS17590 PF05762 VWA domain containing CoxE-like protein PAJ_RS17595 PF03781 Sulfatase-modifying factor enzyme 1 PAJ_RS17595 PF12867 DinB superfamily PAJ_RS17600 PF01037 Lrp/AsnC ligand binding domain PAJ_RS17605 PF00258 Flavodoxin PAJ_RS17610 PF01134 Glucose inhibited division protein A PAJ_RS17610 PF13932 GidA associated domain PAJ_RS17615 PF02527 rRNA small subunit methyltransferase G PAJ_RS17620 PF03899 ATP synthase I chain PAJ_RS17625 PF00119 ATP synthase A chain PAJ_RS17630 PF00137 ATP synthase subunit C PAJ_RS17635 PF00430 ATP synthase B/B' CF(0) PAJ_RS17640 PF00213 ATP synthase delta (OSCP) subunit PAJ_RS17645 PF00306 ATP synthase alpha/beta chain, C terminal domain PAJ_RS17645 PF02874 ATP synthase alpha/beta family, beta-barrel domain PAJ_RS17645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PAJ_RS17650 PF00231 ATP synthase PAJ_RS17655 PF02874 ATP synthase alpha/beta family, beta-barrel domain PAJ_RS17655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PAJ_RS17660 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PAJ_RS17660 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain PAJ_RS17665 PF12804 MobA-like NTP transferase domain PAJ_RS17665 PF00132 Bacterial transferase hexapeptide (six repeats) PAJ_RS17670 PF01380 SIS domain PAJ_RS17680 PF12849 PBP superfamily domain PAJ_RS17685 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS17690 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS17695 PF00005 ABC transporter PAJ_RS17700 PF01895 PhoU domain PAJ_RS17705 PF07690 Major Facilitator Superfamily PAJ_RS17710 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PAJ_RS17710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PAJ_RS17720 PF13407 Periplasmic binding protein domain PAJ_RS17725 PF00005 ABC transporter PAJ_RS17730 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS17735 PF12833 Helix-turn-helix domain PAJ_RS17755 PF00005 ABC transporter PAJ_RS17760 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS17765 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS17770 PF01380 SIS domain PAJ_RS17770 PF01418 Helix-turn-helix domain, rpiR family PAJ_RS17800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS17800 PF08447 PAS fold PAJ_RS17800 PF13426 PAS domain PAJ_RS17805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS17805 PF03466 LysR substrate binding domain PAJ_RS17815 PF07690 Major Facilitator Superfamily PAJ_RS17820 PF02264 LamB porin PAJ_RS17825 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit PAJ_RS17830 PF00232 Glycosyl hydrolase family 1 PAJ_RS17835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS17835 PF02378 Phosphotransferase system, EIIC PAJ_RS17840 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS17845 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS17850 PF00480 ROK family PAJ_RS17855 PF01695 IstB-like ATP binding protein PAJ_RS17860 PF17948 DnaT DNA-binding domain PAJ_RS17870 PF03352 Methyladenine glycosylase PAJ_RS17875 PF00691 OmpA family PAJ_RS17875 PF13488 Glycine zipper PAJ_RS17880 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS17880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family PAJ_RS17885 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS17895 PF00294 pfkB family carbohydrate kinase PAJ_RS17900 PF07690 Major Facilitator Superfamily PAJ_RS17905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PAJ_RS17905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAJ_RS17915 PF00892 EamA-like transporter family PAJ_RS17920 PF04909 Amidohydrolase PAJ_RS17925 PF04754 Putative transposase, YhgA-like PAJ_RS17930 PF00011 Hsp20/alpha crystallin family PAJ_RS17935 PF07119 Protein of unknown function (DUF1375) PAJ_RS17940 PF12566 Protein of unknown function (DUF3748) PAJ_RS17940 PF07676 WD40-like Beta Propeller Repeat PAJ_RS17950 PF00204 DNA gyrase B PAJ_RS17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS17950 PF00986 DNA gyrase B subunit, carboxyl terminus PAJ_RS17950 PF18053 DNA gyrase B subunit insert domain PAJ_RS17950 PF01751 Toprim domain PAJ_RS17955 PF02463 RecF/RecN/SMC N terminal domain PAJ_RS17960 PF00712 DNA polymerase III beta subunit, N-terminal domain PAJ_RS17960 PF02767 DNA polymerase III beta subunit, central domain PAJ_RS17960 PF02768 DNA polymerase III beta subunit, C-terminal domain PAJ_RS17965 PF00308 Bacterial dnaA protein PAJ_RS17965 PF08299 Bacterial dnaA protein helix-turn-helix PAJ_RS17965 PF11638 DnaA N-terminal domain PAJ_RS17975 PF00825 Ribonuclease P PAJ_RS17980 PF02096 60Kd inner membrane protein PAJ_RS17980 PF14849 YidC periplasmic domain PAJ_RS17985 PF10396 GTP-binding protein TrmE N-terminus PAJ_RS17985 PF12631 MnmE helical domain PAJ_RS17985 PF01926 50S ribosome-binding GTPase PAJ_RS17990 PF00881 Nitroreductase family PAJ_RS18000 PF00860 Permease family PAJ_RS18005 PF13419 Haloacid dehalogenase-like hydrolase PAJ_RS18010 PF01757 Acyltransferase family PAJ_RS18015 PF02091 Glycyl-tRNA synthetase alpha subunit PAJ_RS18020 PF05746 DALR anticodon binding domain PAJ_RS18020 PF02092 Glycyl-tRNA synthetase beta subunit PAJ_RS18030 PF06316 Enterobacterial Ail/Lom protein PAJ_RS18035 PF00043 Glutathione S-transferase, C-terminal domain PAJ_RS18035 PF13417 Glutathione S-transferase, N-terminal domain PAJ_RS18040 PF04216 Protein involved in formate dehydrogenase formation PAJ_RS18050 PF02634 FdhD/NarQ family PAJ_RS18055 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PAJ_RS18055 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PAJ_RS18060 PF04393 Protein of unknown function (DUF535) PAJ_RS18070 PF05068 Mannitol repressor PAJ_RS18075 PF01232 Mannitol dehydrogenase Rossmann domain PAJ_RS18075 PF08125 Mannitol dehydrogenase C-terminal domain PAJ_RS18080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS18080 PF02378 Phosphotransferase system, EIIC PAJ_RS18080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PAJ_RS18085 PF11254 Protein of unknown function (DUF3053) PAJ_RS18095 PF01381 Helix-turn-helix PAJ_RS18100 PF03222 Tryptophan/tyrosine permease family PAJ_RS18105 PF01212 Beta-eliminating lyase PAJ_RS18115 PF01047 MarR family PAJ_RS18120 PF02566 OsmC-like protein PAJ_RS18125 PF08019 Phosphoethanolamine transferase EptA/EptB PAJ_RS18125 PF00884 Sulfatase PAJ_RS18140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS18145 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS18150 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS18150 PF12911 N-terminal TM domain of oligopeptide transport permease C PAJ_RS18155 PF00005 ABC transporter PAJ_RS18155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS18160 PF00005 ABC transporter PAJ_RS18160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PAJ_RS18175 PF10609 NUBPL iron-transfer P-loop NTPase PAJ_RS18180 PF03552 Cellulose synthase PAJ_RS18180 PF00535 Glycosyl transferase family 2 PAJ_RS18180 PF07238 PilZ domain PAJ_RS18185 PF03170 Bacterial cellulose synthase subunit PAJ_RS18190 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) PAJ_RS18200 PF01270 Glycosyl hydrolases family 8 PAJ_RS18205 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS18205 PF00563 EAL domain PAJ_RS18205 PF17154 Gammaproteobacterial periplasmic sensor domain PAJ_RS18205 PF00672 HAMP domain PAJ_RS18210 PF00375 Sodium:dicarboxylate symporter family PAJ_RS18220 PF05193 Peptidase M16 inactive domain PAJ_RS18220 PF00675 Insulinase (Peptidase family M16) PAJ_RS18225 PF00331 Glycosyl hydrolase family 10 PAJ_RS18225 PF07859 alpha/beta hydrolase fold PAJ_RS18235 PF00294 pfkB family carbohydrate kinase PAJ_RS18240 PF00563 EAL domain PAJ_RS18245 PF05170 AsmA family PAJ_RS18255 PF00580 UvrD/REP helicase N-terminal domain PAJ_RS18255 PF13361 UvrD-like helicase C-terminal domain PAJ_RS18260 PF02541 Ppx/GppA phosphatase family PAJ_RS18265 PF00270 DEAD/DEAH box helicase PAJ_RS18265 PF00271 Helicase conserved C-terminal domain PAJ_RS18270 PF00085 Thioredoxin PAJ_RS18275 PF07498 Rho termination factor, N-terminal domain PAJ_RS18275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PAJ_RS18275 PF07497 Rho termination factor, RNA-binding domain PAJ_RS18280 PF00953 Glycosyl transferase family 4 PAJ_RS18285 PF02706 Chain length determinant protein PAJ_RS18290 PF02350 UDP-N-acetylglucosamine 2-epimerase PAJ_RS18295 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PAJ_RS18295 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PAJ_RS18295 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PAJ_RS18300 PF16363 GDP-mannose 4,6 dehydratase PAJ_RS18305 PF00483 Nucleotidyl transferase PAJ_RS18315 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PAJ_RS18320 PF01943 Polysaccharide biosynthesis protein PAJ_RS18325 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 PAJ_RS18330 PF06899 WzyE protein, O-antigen assembly polymerase PAJ_RS18335 PF03808 Glycosyl transferase WecB/TagA/CpsF family PAJ_RS18370 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase PAJ_RS18375 PF02602 Uroporphyrinogen-III synthase HemD PAJ_RS18380 PF03900 Porphobilinogen deaminase, C-terminal domain PAJ_RS18380 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PAJ_RS18385 PF12633 Adenylate cyclase NT domain PAJ_RS18385 PF01295 Adenylate cyclase, class-I PAJ_RS18390 PF01678 Diaminopimelate epimerase PAJ_RS18395 PF04340 Protein of unknown function, DUF484 PAJ_RS18400 PF00589 Phage integrase family PAJ_RS18400 PF02899 Phage integrase, N-terminal SAM-like domain PAJ_RS18405 PF13419 Haloacid dehalogenase-like hydrolase PAJ_RS18410 PF00580 UvrD/REP helicase N-terminal domain PAJ_RS18410 PF13361 UvrD-like helicase C-terminal domain PAJ_RS18415 PF01544 CorA-like Mg2+ transporter protein PAJ_RS18420 PF05145 Transition state regulatory protein AbrB PAJ_RS18425 PF00892 EamA-like transporter family PAJ_RS18430 PF01638 HxlR-like helix-turn-helix PAJ_RS18440 PF03061 Thioesterase superfamily PAJ_RS18450 PF00271 Helicase conserved C-terminal domain PAJ_RS18450 PF16124 RecQ zinc-binding PAJ_RS18450 PF00270 DEAD/DEAH box helicase PAJ_RS18450 PF00570 HRDC domain PAJ_RS18450 PF09382 RQC domain PAJ_RS18455 PF01810 LysE type translocator PAJ_RS18460 PF01810 LysE type translocator PAJ_RS18465 PF12146 Serine aminopeptidase, S33 PAJ_RS18475 PF07690 Major Facilitator Superfamily PAJ_RS18480 PF00892 EamA-like transporter family PAJ_RS18485 PF07308 Protein of unknown function (DUF1456) PAJ_RS18490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS18490 PF03466 LysR substrate binding domain PAJ_RS18495 PF01717 Cobalamin-independent synthase, Catalytic domain PAJ_RS18495 PF08267 Cobalamin-independent synthase, N-terminal domain PAJ_RS18500 PF01738 Dienelactone hydrolase family PAJ_RS18505 PF01048 Phosphorylase superfamily PAJ_RS18510 PF02646 RmuC family PAJ_RS18515 PF01209 ubiE/COQ5 methyltransferase family PAJ_RS18520 PF02036 SCP-2 sterol transfer family PAJ_RS18525 PF03109 ABC1 family PAJ_RS18530 PF02416 mttA/Hcf106 family PAJ_RS18540 PF00902 Sec-independent protein translocase protein (TatC) PAJ_RS18545 PF01026 TatD related DNase PAJ_RS18550 PF02357 Transcription termination factor nusG PAJ_RS18555 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PAJ_RS18560 PF00175 Oxidoreductase NAD-binding domain PAJ_RS18560 PF00970 Oxidoreductase FAD-binding domain PAJ_RS18565 PF02803 Thiolase, C-terminal domain PAJ_RS18565 PF00108 Thiolase, N-terminal domain PAJ_RS18570 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PAJ_RS18570 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PAJ_RS18570 PF00378 Enoyl-CoA hydratase/isomerase PAJ_RS18575 PF00557 Metallopeptidase family M24 PAJ_RS18580 PF09186 Domain of unknown function (DUF1949) PAJ_RS18580 PF01205 Uncharacterized protein family UPF0029 PAJ_RS18585 PF02386 Cation transport protein PAJ_RS18590 PF12724 Flavodoxin domain PAJ_RS18615 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PAJ_RS18615 PF01565 FAD binding domain PAJ_RS18620 PF02237 Biotin protein ligase C terminal domain PAJ_RS18620 PF03099 Biotin/lipoate A/B protein ligase family PAJ_RS18620 PF08279 HTH domain PAJ_RS18625 PF00485 Phosphoribulokinase / Uridine kinase family PAJ_RS18650 PF00009 Elongation factor Tu GTP binding domain PAJ_RS18650 PF03143 Elongation factor Tu C-terminal domain PAJ_RS18650 PF03144 Elongation factor Tu domain 2 PAJ_RS18655 PF00584 SecE/Sec61-gamma subunits of protein translocation complex PAJ_RS18660 PF02357 Transcription termination factor nusG PAJ_RS18660 PF00467 KOW motif PAJ_RS18665 PF00298 Ribosomal protein L11, RNA binding domain PAJ_RS18665 PF03946 Ribosomal protein L11, N-terminal domain PAJ_RS18670 PF00687 Ribosomal protein L1p/L10e family PAJ_RS18675 PF00466 Ribosomal protein L10 PAJ_RS18680 PF00542 Ribosomal protein L7/L12 C-terminal domain PAJ_RS18680 PF16320 Ribosomal protein L7/L12 dimerisation domain PAJ_RS18685 PF04561 RNA polymerase Rpb2, domain 2 PAJ_RS18685 PF10385 RNA polymerase beta subunit external 1 domain PAJ_RS18685 PF00562 RNA polymerase Rpb2, domain 6 PAJ_RS18685 PF04565 RNA polymerase Rpb2, domain 3 PAJ_RS18685 PF04563 RNA polymerase beta subunit PAJ_RS18685 PF04560 RNA polymerase Rpb2, domain 7 PAJ_RS18690 PF05000 RNA polymerase Rpb1, domain 4 PAJ_RS18690 PF04998 RNA polymerase Rpb1, domain 5 PAJ_RS18690 PF04983 RNA polymerase Rpb1, domain 3 PAJ_RS18690 PF00623 RNA polymerase Rpb1, domain 2 PAJ_RS18690 PF04997 RNA polymerase Rpb1, domain 1 PAJ_RS18695 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS18695 PF00155 Aminotransferase class I and II PAJ_RS18705 PF01964 Radical SAM ThiC family PAJ_RS18705 PF13667 ThiC-associated domain PAJ_RS18710 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ PAJ_RS18715 PF00293 NUDIX domain PAJ_RS18715 PF09297 NADH pyrophosphatase zinc ribbon domain PAJ_RS18720 PF01208 Uroporphyrinogen decarboxylase (URO-D) PAJ_RS18725 PF04493 Endonuclease V PAJ_RS18730 PF04222 Protein of unknown function (DUF416) PAJ_RS18735 PF00216 Bacterial DNA-binding protein PAJ_RS18740 PF07356 Protein of unknown function (DUF1481) PAJ_RS18745 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PAJ_RS18745 PF02843 Phosphoribosylglycinamide synthetase, C domain PAJ_RS18745 PF02844 Phosphoribosylglycinamide synthetase, N domain PAJ_RS18750 PF02142 MGS-like domain PAJ_RS18750 PF01808 AICARFT/IMPCHase bienzyme PAJ_RS18785 PF01497 Periplasmic binding protein PAJ_RS18795 PF04204 Homoserine O-succinyltransferase PAJ_RS18800 PF01274 Malate synthase PAJ_RS18805 PF00463 Isocitrate lyase family PAJ_RS18810 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) PAJ_RS18815 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS18815 PF07729 FCD domain PAJ_RS18820 PF03573 outer membrane porin, OprD family PAJ_RS18830 PF00144 Beta-lactamase PAJ_RS18835 PF01614 Bacterial transcriptional regulator PAJ_RS18835 PF09339 IclR helix-turn-helix domain PAJ_RS18840 PF02310 B12 binding domain PAJ_RS18840 PF02607 B12 binding domain PAJ_RS18840 PF02965 Vitamin B12 dependent methionine synthase, activation domain PAJ_RS18840 PF00809 Pterin binding enzyme PAJ_RS18840 PF02574 Homocysteine S-methyltransferase PAJ_RS18845 PF06082 Exopolysaccharide biosynthesis protein YbjH PAJ_RS18850 PF06251 Capsule biosynthesis GfcC PAJ_RS18855 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF PAJ_RS18865 PF00342 Phosphoglucose isomerase PAJ_RS18870 PF00696 Amino acid kinase family PAJ_RS18870 PF01842 ACT domain PAJ_RS18875 PF01758 Sodium Bile acid symporter family PAJ_RS18880 PF02690 Na+/Pi-cotransporter PAJ_RS18890 PF06146 Phosphate-starvation-inducible E PAJ_RS18895 PF04345 Chorismate lyase PAJ_RS18900 PF01040 UbiA prenyltransferase family PAJ_RS18905 PF01553 Acyltransferase PAJ_RS18910 PF01219 Prokaryotic diacylglycerol kinase PAJ_RS18915 PF01726 LexA DNA binding domain PAJ_RS18915 PF00717 Peptidase S24-like PAJ_RS18920 PF01554 MatE PAJ_RS18925 PF05532 CsbD-like PAJ_RS18930 PF01475 Ferric uptake regulator family PAJ_RS18940 PF01207 Dihydrouridine synthase (Dus) PAJ_RS18945 PF09583 Phage shock protein G (Phageshock_PspG) PAJ_RS18950 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS18950 PF00107 Zinc-binding dehydrogenase PAJ_RS18955 PF00772 DnaB-like helicase N terminal domain PAJ_RS18955 PF03796 DnaB-like helicase C terminal domain PAJ_RS18960 PF01037 Lrp/AsnC ligand binding domain PAJ_RS18970 PF00155 Aminotransferase class I and II PAJ_RS18975 PF01894 Uncharacterised protein family UPF0047 PAJ_RS18980 PF04237 YjbR PAJ_RS18985 PF00107 Zinc-binding dehydrogenase PAJ_RS18985 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS18995 PF17760 UvrA interaction domain PAJ_RS18995 PF17755 UvrA DNA-binding domain PAJ_RS18995 PF00005 ABC transporter PAJ_RS19000 PF00436 Single-strand binding protein family PAJ_RS19035 PF15940 Family of unknown function PAJ_RS19040 PF12833 Helix-turn-helix domain PAJ_RS19045 PF00376 MerR family regulatory protein PAJ_RS19045 PF09278 MerR, DNA binding PAJ_RS19055 PF00860 Permease family PAJ_RS19060 PF00999 Sodium/hydrogen exchanger family PAJ_RS19065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS19065 PF03466 LysR substrate binding domain PAJ_RS19070 PF03788 LrgA family PAJ_RS19075 PF04172 LrgB-like family PAJ_RS19085 PF00474 Sodium:solute symporter family PAJ_RS19090 PF04341 Protein of unknown function, DUF485 PAJ_RS19095 PF00501 AMP-binding enzyme PAJ_RS19095 PF13193 AMP-binding enzyme C-terminal domain PAJ_RS19095 PF16177 Acetyl-coenzyme A synthetase N-terminus PAJ_RS19100 PF00375 Sodium:dicarboxylate symporter family PAJ_RS19105 PF01380 SIS domain PAJ_RS19110 PF00367 phosphotransferase system, EIIB PAJ_RS19110 PF02378 Phosphotransferase system, EIIC PAJ_RS19115 PF08447 PAS fold PAJ_RS19115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS19120 PF12833 Helix-turn-helix domain PAJ_RS19120 PF12852 Cupin PAJ_RS19125 PF07690 Major Facilitator Superfamily PAJ_RS19135 PF05992 SbmA/BacA-like family PAJ_RS19140 PF13618 Gluconate 2-dehydrogenase subunit 3 PAJ_RS19145 PF05199 GMC oxidoreductase PAJ_RS19145 PF00732 GMC oxidoreductase PAJ_RS19150 PF13442 Cytochrome C oxidase, cbb3-type, subunit III PAJ_RS19150 PF00034 Cytochrome c PAJ_RS19155 PF00083 Sugar (and other) transporter PAJ_RS19160 PF00672 HAMP domain PAJ_RS19160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS19160 PF02203 Tar ligand binding domain homologue PAJ_RS19170 PF03502 Nucleoside-specific channel-forming protein, Tsx PAJ_RS19175 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS19175 PF08521 Two-component sensor kinase N-terminal PAJ_RS19175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS19180 PF00072 Response regulator receiver domain PAJ_RS19180 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS19185 PF12833 Helix-turn-helix domain PAJ_RS19190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS19190 PF03466 LysR substrate binding domain PAJ_RS19195 PF07690 Major Facilitator Superfamily PAJ_RS19200 PF01011 PQQ enzyme repeat PAJ_RS19215 PF01869 BadF/BadG/BcrA/BcrD ATPase family PAJ_RS19220 PF00480 ROK family PAJ_RS19220 PF01047 MarR family PAJ_RS19225 PF17912 MalK OB fold domain PAJ_RS19225 PF00005 ABC transporter PAJ_RS19240 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS19245 PF00528 Binding-protein-dependent transport system inner membrane component PAJ_RS19255 PF00180 Isocitrate/isopropylmalate dehydrogenase PAJ_RS19260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS19260 PF03466 LysR substrate binding domain PAJ_RS19265 PF02203 Tar ligand binding domain homologue PAJ_RS19265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS19265 PF00672 HAMP domain PAJ_RS19275 PF02798 Glutathione S-transferase, N-terminal domain PAJ_RS19280 PF00294 pfkB family carbohydrate kinase PAJ_RS19285 PF02836 Glycosyl hydrolases family 2, TIM barrel domain PAJ_RS19285 PF02929 Beta galactosidase small chain PAJ_RS19285 PF02837 Glycosyl hydrolases family 2, sugar binding domain PAJ_RS19285 PF16353 Domain of unknown function(DUF4981) PAJ_RS19285 PF00703 Glycosyl hydrolases family 2 PAJ_RS19290 PF01306 LacY proton/sugar symporter PAJ_RS19300 PF02378 Phosphotransferase system, EIIC PAJ_RS19300 PF00367 phosphotransferase system, EIIB PAJ_RS19305 PF08244 Glycosyl hydrolases family 32 C terminal PAJ_RS19305 PF00251 Glycosyl hydrolases family 32 N-terminal domain PAJ_RS19310 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS19310 PF13407 Periplasmic binding protein domain PAJ_RS19315 PF13098 Thioredoxin-like domain PAJ_RS19325 PF04143 Sulphur transport PAJ_RS19330 PF00753 Metallo-beta-lactamase superfamily PAJ_RS19330 PF04273 Putative phosphatase (DUF442) PAJ_RS19335 PF01925 Sulfite exporter TauE/SafE PAJ_RS19340 PF07992 Pyridine nucleotide-disulphide oxidoreductase PAJ_RS19350 PF05870 Phenolic acid decarboxylase (PAD) PAJ_RS19375 PF06276 Ferric iron reductase FhuF-like transporter PAJ_RS19375 PF04183 IucA / IucC family PAJ_RS19385 PF04183 IucA / IucC family PAJ_RS19385 PF06276 Ferric iron reductase FhuF-like transporter PAJ_RS19390 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PAJ_RS19395 PF07715 TonB-dependent Receptor Plug Domain PAJ_RS19395 PF00593 TonB dependent receptor PAJ_RS19400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS19400 PF02203 Tar ligand binding domain homologue PAJ_RS19400 PF00672 HAMP domain PAJ_RS19405 PF01757 Acyltransferase family PAJ_RS19410 PF07274 Protein of unknown function (DUF1440) PAJ_RS19415 PF00596 Class II Aldolase and Adducin N-terminal domain PAJ_RS19420 PF01261 Xylose isomerase-like TIM barrel PAJ_RS19425 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PAJ_RS19430 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PAJ_RS19430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PAJ_RS19435 PF07690 Major Facilitator Superfamily PAJ_RS19440 PF04074 YhcH/YjgK/YiaL PAJ_RS19445 PF02615 Malate/L-lactate dehydrogenase PAJ_RS19465 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS19470 PF00005 ABC transporter PAJ_RS19475 PF09339 IclR helix-turn-helix domain PAJ_RS19475 PF01614 Bacterial transcriptional regulator PAJ_RS19495 PF04966 Carbohydrate-selective porin, OprB family PAJ_RS19500 PF00248 Aldo/keto reductase family PAJ_RS19505 PF00331 Glycosyl hydrolase family 10 PAJ_RS19505 PF00756 Putative esterase PAJ_RS19505 PF00404 Dockerin type I domain PAJ_RS19505 PF03422 Carbohydrate binding module (family 6) PAJ_RS19520 PF02525 Flavodoxin-like fold PAJ_RS19530 PF00672 HAMP domain PAJ_RS19530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS19530 PF02203 Tar ligand binding domain homologue PAJ_RS19535 PF00313 'Cold-shock' DNA-binding domain PAJ_RS19540 PF04023 FeoA domain PAJ_RS19545 PF07670 Nucleoside recognition PAJ_RS19545 PF02421 Ferrous iron transport protein B PAJ_RS19545 PF07664 Ferrous iron transport protein B C terminus PAJ_RS19545 PF17910 FeoB cytosolic helical domain PAJ_RS19550 PF00535 Glycosyl transferase family 2 PAJ_RS19560 PF01501 Glycosyl transferase family 8 PAJ_RS19560 PF00535 Glycosyl transferase family 2 PAJ_RS19595 PF13098 Thioredoxin-like domain PAJ_RS19595 PF02683 Cytochrome C biogenesis protein transmembrane region PAJ_RS19595 PF11412 Disulphide bond corrector protein DsbC PAJ_RS19600 PF03091 CutA1 divalent ion tolerance protein PAJ_RS19605 PF03605 Anaerobic c4-dicarboxylate membrane transporter PAJ_RS19615 PF04186 FxsA cytoplasmic membrane protein PAJ_RS19620 PF00166 Chaperonin 10 Kd subunit PAJ_RS19625 PF00118 TCP-1/cpn60 chaperonin family PAJ_RS19630 PF13698 Domain of unknown function (DUF4156) PAJ_RS19635 PF04055 Radical SAM superfamily PAJ_RS19640 PF01132 Elongation factor P (EF-P) OB domain PAJ_RS19640 PF08207 Elongation factor P (EF-P) KOW-like domain PAJ_RS19640 PF09285 Elongation factor P, C-terminal PAJ_RS19650 PF08085 Entericidin EcnA/B family PAJ_RS19655 PF08212 Lipocalin-like domain PAJ_RS19660 PF00152 tRNA synthetases class II (D, K and N) PAJ_RS19665 PF13180 PDZ domain PAJ_RS19670 PF13180 PDZ domain PAJ_RS19670 PF00595 PDZ domain PAJ_RS19675 PF06295 Protein of unknown function (DUF1043) PAJ_RS19680 PF03969 AFG1-like ATPase PAJ_RS19685 PF00572 Ribosomal protein L13 PAJ_RS19690 PF00380 Ribosomal protein S9/S16 PAJ_RS19695 PF02798 Glutathione S-transferase, N-terminal domain PAJ_RS19695 PF00043 Glutathione S-transferase, C-terminal domain PAJ_RS19700 PF04386 Stringent starvation protein B PAJ_RS19705 PF00175 Oxidoreductase NAD-binding domain PAJ_RS19705 PF00258 Flavodoxin PAJ_RS19705 PF00667 FAD binding domain PAJ_RS19710 PF01493 GXGXG motif PAJ_RS19710 PF01645 Conserved region in glutamate synthase PAJ_RS19710 PF04898 Glutamate synthase central domain PAJ_RS19710 PF00310 Glutamine amidotransferases class-II PAJ_RS19715 PF00989 PAS fold PAJ_RS19715 PF01627 Hpt domain PAJ_RS19715 PF18415 Histidine kinase receptor ArcB trans-membrane domain PAJ_RS19715 PF00512 His Kinase A (phospho-acceptor) domain PAJ_RS19715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAJ_RS19715 PF00072 Response regulator receiver domain PAJ_RS19720 PF00912 Transglycosylase PAJ_RS19725 PF00381 PTS HPr component phosphorylation site PAJ_RS19730 PF03668 P-loop ATPase protein family PAJ_RS19735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PAJ_RS19740 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PAJ_RS19745 PF00309 Sigma-54 factor, Activator interacting domain (AID) PAJ_RS19745 PF04552 Sigma-54, DNA binding domain PAJ_RS19745 PF04963 Sigma-54 factor, core binding domain PAJ_RS19750 PF12399 Branched-chain amino acid ATP-binding cassette transporter PAJ_RS19750 PF00005 ABC transporter PAJ_RS19755 PF03968 OstA-like protein PAJ_RS19760 PF06835 Lipopolysaccharide-assembly, LptC-related PAJ_RS19770 PF01380 SIS domain PAJ_RS19770 PF00571 CBS domain PAJ_RS19775 PF01699 Sodium/calcium exchanger protein PAJ_RS19780 PF00005 ABC transporter PAJ_RS19785 PF02405 Permease MlaE PAJ_RS19790 PF02470 MlaD protein PAJ_RS19795 PF05494 MlaC protein PAJ_RS19800 PF13466 STAS domain PAJ_RS19805 PF01722 BolA-like protein PAJ_RS19810 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PAJ_RS19815 PF13693 Winged helix-turn-helix DNA-binding PAJ_RS19820 PF00348 Polyprenyl synthetase PAJ_RS19825 PF00829 Ribosomal prokaryotic L21 protein PAJ_RS19830 PF01016 Ribosomal L27 protein PAJ_RS19835 PF01018 GTP1/OBG PAJ_RS19835 PF01926 50S ribosome-binding GTPase PAJ_RS19840 PF03061 Thioesterase superfamily PAJ_RS19845 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family PAJ_RS19850 PF03449 Transcription elongation factor, N-terminal PAJ_RS19850 PF01272 Transcription elongation factor, GreA/GreB, C-term PAJ_RS19855 PF01985 CRS1 / YhbY (CRM) domain PAJ_RS19860 PF01728 FtsJ-like methyltransferase PAJ_RS19870 PF00809 Pterin binding enzyme PAJ_RS19875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PAJ_RS19875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PAJ_RS19875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PAJ_RS19875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PAJ_RS19880 PF03840 Preprotein translocase SecG subunit PAJ_RS19895 PF02576 RimP N-terminal domain PAJ_RS19895 PF17384 RimP C-terminal SH3 domain PAJ_RS19900 PF00575 S1 RNA binding domain PAJ_RS19900 PF08529 NusA N-terminal domain PAJ_RS19900 PF13184 NusA-like KH domain PAJ_RS19905 PF08364 Bacterial translation initiation factor IF-2 associated region PAJ_RS19905 PF11987 Translation-initiation factor 2 PAJ_RS19905 PF04760 Translation initiation factor IF-2, N-terminal region PAJ_RS19905 PF00009 Elongation factor Tu GTP binding domain PAJ_RS19910 PF02033 Ribosome-binding factor A PAJ_RS19915 PF01509 TruB family pseudouridylate synthase (N terminal domain) PAJ_RS19915 PF16198 tRNA pseudouridylate synthase B C-terminal domain PAJ_RS19915 PF09157 Pseudouridine synthase II TruB, C-terminal PAJ_RS19920 PF00312 Ribosomal protein S15 PAJ_RS19925 PF00575 S1 RNA binding domain PAJ_RS19925 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PAJ_RS19925 PF01138 3' exoribonuclease family, domain 1 PAJ_RS19925 PF00013 KH domain PAJ_RS19925 PF03725 3' exoribonuclease family, domain 2 PAJ_RS19930 PF13181 Tetratricopeptide repeat PAJ_RS19930 PF07719 Tetratricopeptide repeat PAJ_RS19935 PF00271 Helicase conserved C-terminal domain PAJ_RS19935 PF12343 Cold shock protein DEAD box A PAJ_RS19935 PF00270 DEAD/DEAH box helicase PAJ_RS19935 PF03880 DbpA RNA binding domain PAJ_RS19940 PF00296 Luciferase-like monooxygenase PAJ_RS19945 PF01136 Peptidase family U32 PAJ_RS19950 PF01136 Peptidase family U32 PAJ_RS19955 PF02036 SCP-2 sterol transfer family PAJ_RS19960 PF13508 Acetyltransferase (GNAT) domain PAJ_RS19965 PF01541 GIY-YIG catalytic domain PAJ_RS19975 PF01965 DJ-1/PfpI family PAJ_RS19980 PF13460 NAD(P)H-binding PAJ_RS19990 PF13597 Anaerobic ribonucleoside-triphosphate reductase PAJ_RS19990 PF03477 ATP cone domain PAJ_RS19995 PF07691 PA14 domain PAJ_RS19995 PF02838 Glycosyl hydrolase family 20, domain 2 PAJ_RS19995 PF00728 Glycosyl hydrolase family 20, catalytic domain PAJ_RS20005 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS20010 PF00384 Molybdopterin oxidoreductase PAJ_RS20010 PF01568 Molydopterin dinucleotide binding domain PAJ_RS20015 PF03717 Penicillin-binding Protein dimerisation domain PAJ_RS20015 PF00905 Penicillin binding protein transpeptidase domain PAJ_RS20020 PF13533 Biotin-lipoyl like PAJ_RS20025 PF00873 AcrB/AcrD/AcrF family PAJ_RS20030 PF00873 AcrB/AcrD/AcrF family PAJ_RS20035 PF02321 Outer membrane efflux protein PAJ_RS20040 PF00501 AMP-binding enzyme PAJ_RS20040 PF01553 Acyltransferase PAJ_RS20045 PF07690 Major Facilitator Superfamily PAJ_RS20050 PF00672 HAMP domain PAJ_RS20050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS20050 PF02203 Tar ligand binding domain homologue PAJ_RS20055 PF01042 Endoribonuclease L-PSP PAJ_RS20060 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain PAJ_RS20060 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain PAJ_RS20065 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PAJ_RS20065 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PAJ_RS20070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PAJ_RS20070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PAJ_RS20075 PF06877 Regulator of ribonuclease activity B PAJ_RS20080 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) PAJ_RS20085 PF00583 Acetyltransferase (GNAT) family PAJ_RS20095 PF10458 Valyl tRNA synthetase tRNA binding arm PAJ_RS20095 PF00133 tRNA synthetases class I (I, L, M and V) PAJ_RS20095 PF08264 Anticodon-binding domain of tRNA PAJ_RS20100 PF04364 DNA polymerase III chi subunit, HolC PAJ_RS20105 PF00883 Cytosol aminopeptidase family, catalytic domain PAJ_RS20105 PF02789 Cytosol aminopeptidase family, N-terminal domain PAJ_RS20110 PF03739 Lipopolysaccharide export system permease LptF/LptG PAJ_RS20115 PF03739 Lipopolysaccharide export system permease LptF/LptG PAJ_RS20125 PF07687 Peptidase dimerisation domain PAJ_RS20125 PF01546 Peptidase family M20/M25/M40 PAJ_RS20135 PF02126 Phosphotriesterase family PAJ_RS20140 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS20145 PF00005 ABC transporter PAJ_RS20150 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS20160 PF00294 pfkB family carbohydrate kinase PAJ_RS20170 PF04286 Protein of unknown function (DUF445) PAJ_RS20190 PF05872 Bacterial protein of unknown function (DUF853) PAJ_RS20195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PAJ_RS20200 PF01914 MarC family integral membrane protein PAJ_RS20210 PF10696 Protein of unknown function (DUF2501) PAJ_RS20235 PF07728 AAA domain (dynein-related subfamily) PAJ_RS20235 PF12102 Domain of unknown function (DUF3578) PAJ_RS20240 PF00176 SNF2 family N-terminal domain PAJ_RS20240 PF00271 Helicase conserved C-terminal domain PAJ_RS20240 PF12419 SNF2 Helicase protein PAJ_RS20260 PF02384 N-6 DNA Methylase PAJ_RS20305 PF08845 Toxin SymE, type I toxin-antitoxin system PAJ_RS20325 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PAJ_RS20325 PF01276 Orn/Lys/Arg decarboxylase, major domain PAJ_RS20330 PF13193 AMP-binding enzyme C-terminal domain PAJ_RS20330 PF00501 AMP-binding enzyme PAJ_RS20340 PF03466 LysR substrate binding domain PAJ_RS20340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS20350 PF02203 Tar ligand binding domain homologue PAJ_RS20350 PF00672 HAMP domain PAJ_RS20350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PAJ_RS20360 PF07690 Major Facilitator Superfamily PAJ_RS20375 PF00294 pfkB family carbohydrate kinase PAJ_RS20380 PF00701 Dihydrodipicolinate synthetase family PAJ_RS20385 PF04074 YhcH/YjgK/YiaL PAJ_RS20390 PF07690 Major Facilitator Superfamily PAJ_RS20420 PF00550 Phosphopantetheine attachment site PAJ_RS20435 PF07977 FabA-like domain PAJ_RS20440 PF00535 Glycosyl transferase family 2 PAJ_RS20465 PF00109 Beta-ketoacyl synthase, N-terminal domain PAJ_RS20465 PF02801 Beta-ketoacyl synthase, C-terminal domain PAJ_RS20480 PF02801 Beta-ketoacyl synthase, C-terminal domain PAJ_RS20480 PF00109 Beta-ketoacyl synthase, N-terminal domain PAJ_RS20485 PF01648 4'-phosphopantetheinyl transferase superfamily PAJ_RS20495 PF00756 Putative esterase PAJ_RS20495 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PAJ_RS20510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PAJ_RS20510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAJ_RS20515 PF01791 DeoC/LacD family aldolase PAJ_RS20520 PF00107 Zinc-binding dehydrogenase PAJ_RS20520 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS20525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PAJ_RS20525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PAJ_RS20530 PF07690 Major Facilitator Superfamily PAJ_RS20535 PF12833 Helix-turn-helix domain PAJ_RS20535 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PAJ_RS20550 PF00202 Aminotransferase class-III PAJ_RS20560 PF07470 Glycosyl Hydrolase Family 88 PAJ_RS20570 PF04962 KduI/IolB family PAJ_RS20590 PF00005 ABC transporter PAJ_RS20595 PF00818 Ice nucleation protein repeat PAJ_RS20595 PF00818 Ice nucleation protein repeat PAJ_RS20600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PAJ_RS20600 PF13378 Enolase C-terminal domain-like PAJ_RS20610 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS20610 PF00107 Zinc-binding dehydrogenase PAJ_RS20615 PF00083 Sugar (and other) transporter PAJ_RS20615 PF07690 Major Facilitator Superfamily PAJ_RS20620 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS20620 PF07729 FCD domain PAJ_RS20625 PF03695 Uncharacterised protein family (UPF0149) PAJ_RS20625 PF02810 SEC-C motif PAJ_RS20650 PF00884 Sulfatase PAJ_RS20670 PF07690 Major Facilitator Superfamily PAJ_RS20670 PF00083 Sugar (and other) transporter PAJ_RS20675 PF00356 Bacterial regulatory proteins, lacI family PAJ_RS20680 PF01156 Inosine-uridine preferring nucleoside hydrolase PAJ_RS20685 PF07690 Major Facilitator Superfamily PAJ_RS20690 PF04073 Aminoacyl-tRNA editing domain PAJ_RS20695 PF00990 Diguanylate cyclase, GGDEF domain PAJ_RS20700 PF07256 Protein of unknown function (DUF1435) PAJ_RS20720 PF08468 Methyltransferase small domain N-terminal PAJ_RS20720 PF05175 Methyltransferase small domain PAJ_RS20725 PF03603 DNA polymerase III psi subunit PAJ_RS20730 PF00583 Acetyltransferase (GNAT) family PAJ_RS20735 PF13419 Haloacid dehalogenase-like hydrolase PAJ_RS20740 PF10144 Bacterial virulence factor haemolysin PAJ_RS20745 PF18429 Domain of unknown function (DUF5609) PAJ_RS20750 PF18073 Rubredoxin metal binding domain PAJ_RS20755 PF01381 Helix-turn-helix PAJ_RS20755 PF13521 AAA domain PAJ_RS20775 PF02753 Pili assembly chaperone PapD, C-terminal domain PAJ_RS20775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PAJ_RS20780 PF00577 Outer membrane usher protein PAJ_RS20780 PF13954 PapC N-terminal domain PAJ_RS20780 PF13953 PapC C-terminal domain PAJ_RS20790 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PAJ_RS20790 PF02753 Pili assembly chaperone PapD, C-terminal domain PAJ_RS20795 PF08240 Alcohol dehydrogenase GroES-like domain PAJ_RS20795 PF00107 Zinc-binding dehydrogenase PAJ_RS20800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PAJ_RS20800 PF03466 LysR substrate binding domain PAJ_RS20805 PF00005 ABC transporter PAJ_RS20805 PF12848 ABC transporter PAJ_RS20810 PF00455 DeoR C terminal sensor domain PAJ_RS20810 PF08220 DeoR-like helix-turn-helix domain PAJ_RS20815 PF00294 pfkB family carbohydrate kinase PAJ_RS20820 PF07690 Major Facilitator Superfamily PAJ_RS20830 PF00282 Pyridoxal-dependent decarboxylase conserved domain PAJ_RS20835 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PAJ_RS20840 PF06276 Ferric iron reductase FhuF-like transporter PAJ_RS20840 PF04183 IucA / IucC family PAJ_RS20845 PF07690 Major Facilitator Superfamily PAJ_RS20850 PF07715 TonB-dependent Receptor Plug Domain PAJ_RS20850 PF00593 TonB dependent receptor PAJ_RS20855 PF00005 ABC transporter PAJ_RS20860 PF00005 ABC transporter PAJ_RS20860 PF12399 Branched-chain amino acid ATP-binding cassette transporter PAJ_RS20870 PF02653 Branched-chain amino acid transport system / permease component PAJ_RS20875 PF13458 Periplasmic binding protein PAJ_RS20880 PF00392 Bacterial regulatory proteins, gntR family PAJ_RS20880 PF07729 FCD domain PAJ_RS20885 PF02785 Biotin carboxylase C-terminal domain PAJ_RS20885 PF00289 Biotin carboxylase, N-terminal domain PAJ_RS20885 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PAJ_RS20895 PF01464 Transglycosylase SLT domain PAJ_RS20895 PF14718 Soluble lytic murein transglycosylase L domain PAJ_RS20900 PF01371 Trp repressor protein PAJ_RS20905 PF01931 Protein of unknown function DUF84 PAJ_RS20910 PF00300 Histidine phosphatase superfamily (branch 1) PAJ_RS20915 PF06445 GyrI-like small molecule binding domain PAJ_RS20915 PF12833 Helix-turn-helix domain PAJ_RS20920 PF05981 CreA protein PAJ_RS20925 PF00072 Response regulator receiver domain PAJ_RS20925 PF00486 Transcriptional regulatory protein, C terminal PAJ_RS20930 PF00588 SpoU rRNA Methylase family PAJ_RS21120 PF00226 DnaJ domain PAJ_RS21120 PF05099 Tellurite resistance protein TerB PAJ_RS21395 PF01510 N-acetylmuramoyl-L-alanine amidase PAJ_RS21465 PF17042 Nucleotide-binding C-terminal domain PAJ_RS21465 PF07005 Sugar-binding N-terminal domain PAJ_RS21585 PF08482 ATP-dependent helicase C-terminal PAJ_RS21585 PF00270 DEAD/DEAH box helicase PAJ_RS21585 PF00271 Helicase conserved C-terminal domain PAJ_RS21585 PF04408 Helicase associated domain (HA2) PAJ_RS21590 PF08482 ATP-dependent helicase C-terminal PAJ_RS21590 PF04408 Helicase associated domain (HA2) PAJ_RS21590 PF00271 Helicase conserved C-terminal domain PAJ_RS21590 PF00270 DEAD/DEAH box helicase PAJ_RS21715 PF01255 Putative undecaprenyl diphosphate synthase PAJ_RS21815 PF09383 NIL domain PAJ_RS21815 PF00005 ABC transporter PAJ_RS22250 PF05860 haemagglutination activity domain PAJ_RS22250 PF04829 Pre-toxin domain with VENN motif PAJ_RS22250 PF15605 Bacterial toxin 28 PAJ_RS22250 PF13332 Hemagglutinin repeat PAJ_RS22260 PF04829 Pre-toxin domain with VENN motif PAJ_RS22260 PF15605 Bacterial toxin 28 PAJ_RS22260 PF13332 Hemagglutinin repeat PAJ_RS22260 PF05860 haemagglutination activity domain PAJ_RS22265 PF13332 Hemagglutinin repeat PAJ_RS22265 PF05594 Haemagluttinin repeat PAJ_RS22265 PF05860 haemagglutination activity domain PAJ_RS22265 PF04829 Pre-toxin domain with VENN motif PAJ_RS22270 PF04829 Pre-toxin domain with VENN motif PAJ_RS22270 PF13332 Hemagglutinin repeat PAJ_RS22270 PF05594 Haemagluttinin repeat PAJ_RS22300 PF03466 LysR substrate binding domain PAJ_RS22300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family