locus-tag	class	description
PAJ_RS00005	COG0527	aspartate kinase activity
PAJ_RS00005	COG0460	homoserine dehydrogenase
PAJ_RS00010	COG0083	homoserine kinase activity
PAJ_RS00020	COG3022	response to hydroperoxide
PAJ_RS00025	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
PAJ_RS00030	COG0521	Mo-molybdopterin cofactor biosynthetic process
PAJ_RS00040	COG1584	GPR1 FUN34 yaaH family protein
PAJ_RS00050	COG0484	heat shock protein binding
PAJ_RS00060	COG0268	Binds directly to 16S ribosomal RNA
PAJ_RS00070	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
PAJ_RS00075	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
PAJ_RS00080	COG1047	Peptidyl-prolyl cis-trans
PAJ_RS00095	COG0505	Belongs to the CarA family
PAJ_RS00100	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
PAJ_RS00120	COG0583	DNA-binding transcription factor activity
PAJ_RS00140	COG2967	ApaG domain
PAJ_RS00145	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
PAJ_RS00150	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
PAJ_RS00155	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PAJ_RS00160	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
PAJ_RS00170	COG0564	pseudouridine synthase activity
PAJ_RS00175	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
PAJ_RS00180	COG0417	DNA replication proofreading
PAJ_RS00185	COG0586	Pfam SNARE associated Golgi protein
PAJ_RS00195	COG1178	ABC-type Fe3 transport system permease component
PAJ_RS00200	COG4143	(ABC) transporter
PAJ_RS00210	COG2814	Major facilitator Superfamily
PAJ_RS00215	COG2271	Major facilitator Superfamily
PAJ_RS00220	COG0583	DNA-binding transcription factor activity
PAJ_RS00230	COG0738	Major facilitator superfamily
PAJ_RS00250	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PAJ_RS00255	COG0473	3-isopropylmalate dehydrogenase activity
PAJ_RS00260	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PAJ_RS00265	COG0028	Belongs to the TPP enzyme family
PAJ_RS00280	COG2001	Belongs to the MraZ family
PAJ_RS00290	COG3116	cell division
PAJ_RS00295	COG0768	penicillin binding
PAJ_RS00305	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
PAJ_RS00315	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PAJ_RS00320	COG0772	Belongs to the SEDS family
PAJ_RS00325	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PAJ_RS00335	COG1181	Belongs to the D-alanine--D-alanine ligase family
PAJ_RS00345	COG0849	cell division
PAJ_RS00350	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PAJ_RS00370	COG0494	nUDIX hydrolase
PAJ_RS00385	COG0237	dephospho-CoA kinase activity
PAJ_RS00390	COG0516	GMP reductase activity
PAJ_RS00395	COG1459	type II secretion system
PAJ_RS00400	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
PAJ_RS00405	COG4969	Belongs to the N-Me-Phe pilin family
PAJ_RS00415	COG3023	N-Acetylmuramoyl-L-alanine amidase
PAJ_RS00420	COG3725	Membrane protein required for beta-lactamase induction
PAJ_RS00425	COG3940	Belongs to the glycosyl hydrolase 43 family
PAJ_RS00430	COG2211	Major facilitator Superfamily
PAJ_RS00435	COG1113	amino acid transport
PAJ_RS00440	COG2186	Transcriptional regulator
PAJ_RS00445	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
PAJ_RS00450	COG0508	dehydrogenase complex catalyzes the overall conversion of
PAJ_RS00455	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PAJ_RS00460	COG0583	DNA-binding transcription factor activity
PAJ_RS00465	COG0667	Aldo Keto reductase
PAJ_RS00490	COG0840	transmembrane signaling receptor activity
PAJ_RS00510	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
PAJ_RS00520	COG2132	Multicopper oxidase
PAJ_RS00530	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
PAJ_RS00535	COG0288	reversible hydration of carbon dioxide
PAJ_RS00540	COG1131	(ABC) transporter
PAJ_RS00545	COG0842	Transport permease protein
PAJ_RS00550	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
PAJ_RS00555	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
PAJ_RS00565	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
PAJ_RS00570	COG0617	tRNA 3'-terminal CCA addition
PAJ_RS00580	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
PAJ_RS00585	COG1489	DNA binding
PAJ_RS00590	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
PAJ_RS00595	COG1643	Atp-dependent helicase
PAJ_RS00600	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
PAJ_RS00605	COG4774	siderophore transport
PAJ_RS00615	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
PAJ_RS00630	COG0316	Belongs to the HesB IscA family
PAJ_RS00645	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PAJ_RS00655	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PAJ_RS00660	COG3835	regulator
PAJ_RS00675	COG2171	N-acyltransferase activity
PAJ_RS00680	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
PAJ_RS00700	COG0528	UMP kinase activity
PAJ_RS00710	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
PAJ_RS00715	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
PAJ_RS00720	COG0575	Belongs to the CDS family
PAJ_RS00730	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PAJ_RS00735	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
PAJ_RS00745	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
PAJ_RS00755	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PAJ_RS00760	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PAJ_RS00775	COG1982	Orn Lys Arg decarboxylase major
PAJ_RS00780	COG0346	lactoylglutathione lyase activity
PAJ_RS00785	COG0037	tRNA processing
PAJ_RS00795	COG4568	rho-dependent transcription termination
PAJ_RS00815	COG1720	tRNA m6t6A37 methyltransferase activity
PAJ_RS00830	COG2011	ABC-type metal ion transport system permease component
PAJ_RS00840	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
PAJ_RS00870	COG0583	DNA-binding transcription factor activity
PAJ_RS00875	COG3021	interspecies interaction between organisms
PAJ_RS00890	COG2226	methyltransferase
PAJ_RS00910	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
PAJ_RS00915	COG1953	Uracil, thiamine, allantoin
PAJ_RS00955	COG0583	DNA-binding transcription factor activity
PAJ_RS00960	COG2072	flavoprotein involved in K transport
PAJ_RS00985	COG0583	DNA-binding transcription factor activity
PAJ_RS01025	COG0765	amino acid transport
PAJ_RS01035	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
PAJ_RS01055	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
PAJ_RS01065	COG0436	Aminotransferase
PAJ_RS01075	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
PAJ_RS01080	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
PAJ_RS01105	COG0121	glutamine amidotransferase
PAJ_RS01110	COG3034	peptidoglycan biosynthetic process
PAJ_RS01130	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS01135	COG1129	ABC transporter
PAJ_RS01140	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
PAJ_RS01150	COG2195	Cleaves the N-terminal amino acid of tripeptides
PAJ_RS01155	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
PAJ_RS01160	COG1073	alpha beta
PAJ_RS01170	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
PAJ_RS01175	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
PAJ_RS01180	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
PAJ_RS01185	COG2932	Transcriptional regulator
PAJ_RS01215	COG3383	formate dehydrogenase (NAD+) activity
PAJ_RS01215	COG0243	molybdopterin cofactor binding
PAJ_RS01220	COG0437	4 iron, 4 sulfur cluster binding
PAJ_RS01225	COG2864	formate dehydrogenase
PAJ_RS01250	COG2376	Dihydroxyacetone kinase
PAJ_RS01255	COG1461	Dihydroxyacetone kinase
PAJ_RS01260	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PAJ_RS01260	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS01260	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
PAJ_RS01290	COG3210	domain, Protein
PAJ_RS01305	COG2249	NAD(P)H dehydrogenase (quinone) activity
PAJ_RS01310	COG1278	Cold shock
PAJ_RS01315	COG0784	Response regulator, receiver
PAJ_RS01315	COG0835	chemotaxis
PAJ_RS01325	COG0513	Belongs to the DEAD box helicase family
PAJ_RS01335	COG0402	S-adenosylhomocysteine deaminase activity
PAJ_RS01340	COG0583	DNA-binding transcription factor activity
PAJ_RS01345	COG2807	transmembrane transport
PAJ_RS01355	COG2186	Transcriptional regulator
PAJ_RS01365	COG1764	response to oxidative stress
PAJ_RS01385	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
PAJ_RS01390	COG1447	Phosphotransferase system cellobiose-specific component IIA
PAJ_RS01395	COG2723	6-phospho-beta-galactosidase activity
PAJ_RS01400	COG1609	Transcriptional regulator
PAJ_RS01445	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
PAJ_RS01450	COG1671	Belongs to the UPF0178 family
PAJ_RS01455	COG3416	Protein conserved in bacteria
PAJ_RS01460	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PAJ_RS01470	COG3123	guanosine phosphorylase activity
PAJ_RS01475	COG2974	May be involved in recombination
PAJ_RS01480	COG1940	carbohydrate kinase activity
PAJ_RS01490	COG0419	ATPase involved in DNA repair
PAJ_RS01495	COG0420	3'-5' exonuclease activity
PAJ_RS01500	COG0745	RESPONSE REGULATOR receiver
PAJ_RS01505	COG5002	protein histidine kinase activity
PAJ_RS01515	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
PAJ_RS01520	COG1114	Component of the transport system for branched-chain amino acids
PAJ_RS01525	COG1113	amino acid transport
PAJ_RS01545	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
PAJ_RS01550	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
PAJ_RS01555	COG0343	queuine tRNA-ribosyltransferase activity
PAJ_RS01560	COG1862	Preprotein translocase
PAJ_RS01565	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
PAJ_RS01570	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
PAJ_RS01575	COG4238	major outer membrane lipoprotein
PAJ_RS01580	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PAJ_RS01585	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PAJ_RS01585	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PAJ_RS01590	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
PAJ_RS01595	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PAJ_RS01600	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
PAJ_RS01605	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
PAJ_RS01610	COG0667	Aldo Keto reductase
PAJ_RS01615	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
PAJ_RS01620	COG0142	geranyltranstransferase activity
PAJ_RS01625	COG1722	exodeoxyribonuclease VII activity
PAJ_RS01630	COG0301	tRNA thio-modification
PAJ_RS01630	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PAJ_RS01635	COG0693	protein deglycase activity
PAJ_RS01640	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
PAJ_RS01645	COG1666	GTP binding
PAJ_RS01650	COG3284	Transcriptional regulator
PAJ_RS01665	COG2814	Major facilitator Superfamily
PAJ_RS01670	COG0109	protoheme IX farnesyltransferase activity
PAJ_RS01675	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
PAJ_RS01680	COG1845	cytochrome c oxidase, subunit III
PAJ_RS01685	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
PAJ_RS01690	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
PAJ_RS01695	COG2223	nitrite transmembrane transporter activity
PAJ_RS01700	COG3056	Lipoprotein
PAJ_RS01705	COG0271	Belongs to the BolA IbaG family
PAJ_RS01710	COG0544	peptidyl-prolyl cis-trans isomerase activity
PAJ_RS01730	COG0776	regulation of translation
PAJ_RS01740	COG1555	photosystem II stabilization
PAJ_RS01745	COG0824	Thioesterase
PAJ_RS01760	COG1522	sequence-specific DNA binding
PAJ_RS01765	COG1132	(ABC) transporter
PAJ_RS01770	COG1132	(ABC) transporter
PAJ_RS01775	COG0347	Belongs to the P(II) protein family
PAJ_RS01780	COG0004	ammonium transporteR
PAJ_RS01785	COG1946	Acyl-CoA thioesterase
PAJ_RS01790	COG3126	Type III secretion system lipoprotein chaperone (YscW)
PAJ_RS01795	COG3695	enzyme binding
PAJ_RS01820	COG1121	(ABC) transporter
PAJ_RS01825	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PAJ_RS01830	COG0803	Belongs to the bacterial solute-binding protein 9 family
PAJ_RS01835	COG0257	Belongs to the bacterial ribosomal protein bL36 family
PAJ_RS01840	COG0254	rRNA binding
PAJ_RS01845	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PAJ_RS01850	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PAJ_RS01855	COG1309	transcriptional regulator
PAJ_RS01865	COG2832	Protein of unknown function (DUF454)
PAJ_RS01870	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PAJ_RS01880	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
PAJ_RS01885	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PAJ_RS01890	COG0326	Molecular chaperone. Has ATPase activity
PAJ_RS01895	COG0563	adenylate kinase activity
PAJ_RS01900	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS01905	COG4651	solute:proton antiporter activity
PAJ_RS01905	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
PAJ_RS01910	COG0737	Belongs to the 5'-nucleotidase family
PAJ_RS01925	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PAJ_RS01930	COG3735	TraB family
PAJ_RS01955	COG1585	Membrane protein implicated in regulation of membrane protease activity
PAJ_RS01960	COG0330	HflC and HflK could
PAJ_RS01965	COG3118	belongs to the thioredoxin family
PAJ_RS01970	COG0300	oxidoreductase activity
PAJ_RS01975	COG2755	lipolytic protein G-D-S-L family
PAJ_RS01980	COG4181	ATPase activity
PAJ_RS01985	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
PAJ_RS01990	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
PAJ_RS01995	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PAJ_RS02010	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PAJ_RS02020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PAJ_RS02025	COG2501	S4 domain
PAJ_RS02030	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PAJ_RS02070	COG0463	Glycosyl transferase, family 2
PAJ_RS02075	COG2246	polysaccharide biosynthetic process
PAJ_RS02090	COG2831	hemolysin activation secretion protein
PAJ_RS02095	COG3210	domain, Protein
PAJ_RS02150	COG2963	transposase activity
PAJ_RS02170	COG3209	COG3209 Rhs family protein
PAJ_RS02170	COG4104	PAAR repeat-containing protein
PAJ_RS02210	COG2211	Major facilitator Superfamily
PAJ_RS02225	COG4529	Protein conserved in bacteria
PAJ_RS02240	COG2814	Major facilitator Superfamily
PAJ_RS02255	COG3188	usher protein
PAJ_RS02265	COG3539	Fimbrial protein
PAJ_RS02315	COG1597	lipid kinase activity
PAJ_RS02315	COG1803	Methylglyoxal synthase
PAJ_RS02335	COG0628	permease
PAJ_RS02340	COG0671	phosphoesterase, PA-phosphatase related
PAJ_RS02345	COG1063	alcohol dehydrogenase
PAJ_RS02350	COG0814	amino acid
PAJ_RS02355	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
PAJ_RS02365	COG0561	phosphatase activity
PAJ_RS02370	COG1454	alcohol dehydrogenase
PAJ_RS02375	COG2610	gluconate transmembrane transporter activity
PAJ_RS02395	COG1278	Cold shock
PAJ_RS02405	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
PAJ_RS02410	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PAJ_RS02415	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
PAJ_RS02420	COG0321	lipoyl(octanoyl) transferase activity
PAJ_RS02430	COG1686	Belongs to the peptidase S11 family
PAJ_RS02435	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
PAJ_RS02440	COG0772	Belongs to the SEDS family
PAJ_RS02445	COG0768	penicillin binding
PAJ_RS02450	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
PAJ_RS02455	COG0799	negative regulation of ribosome biogenesis
PAJ_RS02465	COG1466	dna polymerase III delta subunit
PAJ_RS02470	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
PAJ_RS02475	COG0495	leucyl-tRNA aminoacylation
PAJ_RS02480	COG2888	peptidyl-tyrosine sulfation
PAJ_RS02485	COG1126	abc transporter atp-binding protein
PAJ_RS02490	COG0765	amino acid transport
PAJ_RS02495	COG0765	amino acid transport
PAJ_RS02505	COG0815	Transfers the fatty acyl group on membrane lipoproteins
PAJ_RS02510	COG4535	Mg2 and Co2 transporter CorC
PAJ_RS02515	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PAJ_RS02520	COG1702	phosphate starvation-inducible protein PhoH
PAJ_RS02530	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PAJ_RS02570	COG0367	asparagine synthase
PAJ_RS02575	COG0647	UMP catabolic process
PAJ_RS02580	COG1846	Transcriptional regulator
PAJ_RS02580	COG1940	carbohydrate kinase activity
PAJ_RS02585	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
PAJ_RS02590	COG0363	glucosamine-6-phosphate deaminase activity
PAJ_RS02595	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PAJ_RS02595	COG1263	PTS System
PAJ_RS02595	COG2190	(PTS) system
PAJ_RS02600	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PAJ_RS02610	COG0735	belongs to the Fur family
PAJ_RS02625	COG0596	Alpha beta hydrolase
PAJ_RS02630	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
PAJ_RS02635	COG0033	Phosphoglucomutase
PAJ_RS02640	COG0745	RESPONSE REGULATOR receiver
PAJ_RS02650	COG3272	Protein of unknown function (DUF1722)
PAJ_RS02655	COG0415	Belongs to the DNA photolyase family
PAJ_RS02665	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
PAJ_RS02670	COG1984	allophanate hydrolase subunit 2
PAJ_RS02675	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
PAJ_RS02690	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
PAJ_RS02700	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PAJ_RS02705	COG0372	Belongs to the citrate synthase family
PAJ_RS02715	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
PAJ_RS02725	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
PAJ_RS02730	COG0567	Dehydrogenase, E1 component
PAJ_RS02735	COG0508	dehydrogenase complex catalyzes the overall conversion of
PAJ_RS02740	COG0045	succinate-CoA ligase (ADP-forming) activity
PAJ_RS02745	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
PAJ_RS02750	COG1271	oxidase subunit
PAJ_RS02755	COG1294	oxidase, subunit
PAJ_RS02760	COG4890	Cyd operon protein YbgT
PAJ_RS02765	COG3790	cyd operon protein YbgE
PAJ_RS02770	COG0824	Thioesterase
PAJ_RS02775	COG0811	peptide transport
PAJ_RS02780	COG0848	biopolymer transport protein
PAJ_RS02785	COG3064	Membrane
PAJ_RS02795	COG2885	chlorophyll binding
PAJ_RS02800	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
PAJ_RS02835	COG0840	transmembrane signaling receptor activity
PAJ_RS02845	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
PAJ_RS02860	COG1230	cation diffusion facilitator family transporter
PAJ_RS02865	COG2205	protein histidine kinase activity
PAJ_RS02865	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PAJ_RS02870	COG2197	response regulator
PAJ_RS02880	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PAJ_RS02885	COG0588	phosphoglycerate mutase activity
PAJ_RS02890	COG2017	converts alpha-aldose to the beta-anomer
PAJ_RS02900	COG1085	galactose-1-phosphate uridylyltransferase
PAJ_RS02905	COG1119	ATPase activity
PAJ_RS02910	COG3585	molybdate ion transport
PAJ_RS02910	COG2005	Transcriptional regulator
PAJ_RS02915	COG0725	ABC transporter, periplasmic molybdate-binding protein
PAJ_RS02920	COG4149	molybdate abc transporter
PAJ_RS02930	COG0561	phosphatase activity
PAJ_RS02935	COG2706	6-phosphogluconolactonase activity
PAJ_RS02940	COG1881	PFAM PEBP family protein
PAJ_RS02950	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
PAJ_RS02960	COG2226	methyltransferase
PAJ_RS02965	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
PAJ_RS02975	COG0556	nucleotide-excision repair
PAJ_RS02990	COG0521	Mo-molybdopterin cofactor biosynthetic process
PAJ_RS02995	COG0315	cyclic pyranopterin monophosphate synthase activity
PAJ_RS03000	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
PAJ_RS03005	COG0314	molybdopterin synthase activity
PAJ_RS03015	COG0670	Belongs to the BI1 family
PAJ_RS03020	COG0392	lysyltransferase activity
PAJ_RS03025	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAJ_RS03030	COG3568	Endonuclease Exonuclease Phosphatase
PAJ_RS03040	COG0513	Belongs to the DEAD box helicase family
PAJ_RS03045	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PAJ_RS03055	COG0306	phosphate transporter
PAJ_RS03065	COG1376	ErfK ybiS ycfS ynhG family protein
PAJ_RS03070	COG3387	PFAM Glycoside hydrolase 15-related
PAJ_RS03075	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS03080	COG0586	Pfam SNARE associated Golgi protein
PAJ_RS03090	COG1686	Belongs to the peptidase S11 family
PAJ_RS03095	COG1511	domain protein
PAJ_RS03095	COG3264	Mechanosensitive ion channel
PAJ_RS03100	COG0277	FAD linked oxidase domain protein
PAJ_RS03105	COG1472	Belongs to the glycosyl hydrolase 3 family
PAJ_RS03115	COG0840	transmembrane signaling receptor activity
PAJ_RS03120	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
PAJ_RS03125	COG1732	Glycine betaine
PAJ_RS03130	COG1174	glycine betaine transport
PAJ_RS03135	COG1125	glycine betaine transport
PAJ_RS03140	COG1174	glycine betaine transport
PAJ_RS03145	COG0789	Transcriptional regulator
PAJ_RS03165	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PAJ_RS03170	COG1473	amidohydrolase
PAJ_RS03175	COG1609	Transcriptional regulator
PAJ_RS03185	COG2271	Major facilitator Superfamily
PAJ_RS03195	COG2986	histidine ammonia-lyase
PAJ_RS03210	COG0402	S-adenosylhomocysteine deaminase activity
PAJ_RS03215	COG1228	amidohydrolase
PAJ_RS03245	COG2986	histidine ammonia-lyase
PAJ_RS03260	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
PAJ_RS03265	COG1126	abc transporter atp-binding protein
PAJ_RS03270	COG0765	amino acid transport
PAJ_RS03275	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PAJ_RS03280	COG0783	Belongs to the Dps family
PAJ_RS03285	COG5006	permease, DMT superfamily
PAJ_RS03290	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
PAJ_RS03300	COG1321	iron dependent repressor
PAJ_RS03305	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
PAJ_RS03310	COG1566	PFAM secretion protein HlyD family protein
PAJ_RS03315	COG2814	Major facilitator Superfamily
PAJ_RS03325	COG2916	Histone family protein nucleoid-structuring protein H-NS
PAJ_RS03330	COG0488	(ABC) transporter
PAJ_RS03335	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
PAJ_RS03340	COG0303	'Molybdopterin
PAJ_RS03350	COG4172	Belongs to the ABC transporter superfamily
PAJ_RS03385	COG2133	pyrroloquinoline quinone binding
PAJ_RS03395	COG1686	Belongs to the peptidase S11 family
PAJ_RS03400	COG0671	phosphoesterase, PA-phosphatase related
PAJ_RS03425	COG0778	Nitroreductase
PAJ_RS03430	COG0189	ligase activity
PAJ_RS03440	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
PAJ_RS03445	COG3842	ATPase activity
PAJ_RS03450	COG1176	ABC-type spermidine putrescine transport system, permease component I
PAJ_RS03455	COG1177	transmembrane transport
PAJ_RS03470	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PAJ_RS03475	COG4160	amino acid transport
PAJ_RS03485	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PAJ_RS03490	COG1126	abc transporter atp-binding protein
PAJ_RS03500	COG0393	Putative heavy-metal-binding
PAJ_RS03505	COG3023	N-Acetylmuramoyl-L-alanine amidase
PAJ_RS03510	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
PAJ_RS03515	COG0028	Belongs to the TPP enzyme family
PAJ_RS03520	COG2431	L-lysine efflux transmembrane transporter activity
PAJ_RS03525	COG3593	DNA synthesis involved in DNA repair
PAJ_RS03530	COG1278	Cold shock
PAJ_RS03535	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
PAJ_RS03540	COG0542	response to heat
PAJ_RS03550	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
PAJ_RS03555	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
PAJ_RS03560	COG4988	ABC transporter
PAJ_RS03565	COG0492	ferredoxin-NADP+ reductase activity
PAJ_RS03575	COG3107	peptidoglycan biosynthetic process
PAJ_RS03575	COG1674	ftsk spoiiie
PAJ_RS03580	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
PAJ_RS03585	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
PAJ_RS03595	COG0477	Major facilitator Superfamily
PAJ_RS03600	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PAJ_RS03605	COG1882	Formate acetyltransferase
PAJ_RS03610	COG2116	formate transmembrane transporter activity
PAJ_RS03615	COG1944	ATP diphosphatase activity
PAJ_RS03620	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
PAJ_RS03630	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
PAJ_RS03635	COG0539	negative regulation of cytoplasmic translation
PAJ_RS03640	COG0776	regulation of translation
PAJ_RS03645	COG0658	competence protein
PAJ_RS03645	COG2333	competence protein COMEC
PAJ_RS03660	COG3214	Protein conserved in bacteria
PAJ_RS03665	COG2835	tetraacyldisaccharide 4'-kinase activity
PAJ_RS03670	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
PAJ_RS03675	COG1434	Gram-negative-bacterium-type cell wall biogenesis
PAJ_RS03680	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
PAJ_RS03685	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
PAJ_RS03690	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
PAJ_RS03700	COG2989	Protein conserved in bacteria
PAJ_RS03705	COG3108	Peptidase M15
PAJ_RS03710	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PAJ_RS03725	COG0017	Asparaginyl-tRNA synthetase
PAJ_RS03730	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
PAJ_RS03735	COG0308	aminopeptidase N
PAJ_RS03745	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PAJ_RS03750	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PAJ_RS03755	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PAJ_RS03760	COG0431	NADPH-dependent FMN reductase
PAJ_RS03765	COG1216	Glycosyl transferase, family 2
PAJ_RS03775	COG0167	dihydroorotate dehydrogenase activity
PAJ_RS03785	COG3217	Mosc domain protein beta barrel domain protein
PAJ_RS03785	COG0633	Ferredoxin
PAJ_RS03790	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
PAJ_RS03790	COG0116	Belongs to the methyltransferase superfamily
PAJ_RS03795	COG0488	(ABC) transporter
PAJ_RS03800	COG2995	paraquat-inducible protein a
PAJ_RS03805	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
PAJ_RS03805	COG3008	intermembrane lipid transfer
PAJ_RS03810	COG3009	Protein conserved in bacteria
PAJ_RS03815	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
PAJ_RS03820	COG1067	ATP-dependent peptidase activity
PAJ_RS03825	COG3120	sequence-specific DNA binding
PAJ_RS03840	COG3070	regulator of competence-specific genes
PAJ_RS03845	COG1289	transmembrane transporter activity
PAJ_RS03850	COG3304	Inner membrane component domain
PAJ_RS03855	COG0210	DNA helicase
PAJ_RS03870	COG1832	CoA-binding protein
PAJ_RS03880	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
PAJ_RS03890	COG2920	part of a sulfur-relay system
PAJ_RS03895	COG0670	Belongs to the BI1 family
PAJ_RS03915	COG1012	belongs to the aldehyde dehydrogenase family
PAJ_RS03935	COG1309	transcriptional regulator
PAJ_RS03960	COG2197	response regulator
PAJ_RS03975	COG2197	response regulator
PAJ_RS03985	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PAJ_RS04075	COG1403	HNH endonuclease
PAJ_RS04135	COG4626	Terminase
PAJ_RS04135	COG1802	Transcriptional regulator
PAJ_RS04140	COG4695	Portal protein
PAJ_RS04145	COG0740	serine-type endopeptidase activity
PAJ_RS04265	COG0659	secondary active sulfate transmembrane transporter activity
PAJ_RS04310	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAJ_RS04325	COG2943	transferase activity, transferring hexosyl groups
PAJ_RS04330	COG5645	(Lipo)protein
PAJ_RS04360	COG1054	Belongs to the UPF0176 family
PAJ_RS04370	COG3038	cytochrome b561
PAJ_RS04400	COG0418	dihydroorotase activity
PAJ_RS04410	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PAJ_RS04430	COG0840	transmembrane signaling receptor activity
PAJ_RS04455	COG1558	bacterial-type flagellum-dependent cell motility
PAJ_RS04505	COG1530	ribonuclease E activity
PAJ_RS04510	COG0564	pseudouridine synthase activity
PAJ_RS04525	COG0333	Belongs to the bacterial ribosomal protein bL32 family
PAJ_RS04535	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PAJ_RS04540	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
PAJ_RS04545	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS04555	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PAJ_RS04560	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
PAJ_RS04565	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
PAJ_RS04570	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
PAJ_RS04575	COG0470	DNA polymerase III
PAJ_RS04580	COG0084	hydrolase, TatD family'
PAJ_RS04585	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PAJ_RS04585	COG1263	PTS System
PAJ_RS04590	COG0840	transmembrane signaling receptor activity
PAJ_RS04595	COG0537	adenosine 5'-monophosphoramidase activity
PAJ_RS04600	COG5633	Lipoprotein
PAJ_RS04605	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
PAJ_RS04615	COG1472	Belongs to the glycosyl hydrolase 3 family
PAJ_RS04625	COG1252	NADH dehydrogenase
PAJ_RS04630	COG3134	Outer membrane lipoprotein
PAJ_RS04640	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
PAJ_RS04645	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PAJ_RS04650	COG4591	ABC-type transport system involved in lipoprotein release permease component
PAJ_RS04660	COG4591	ABC-type transport system involved in lipoprotein release permease component
PAJ_RS04665	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
PAJ_RS04670	COG2195	Cleaves the N-terminal amino acid of tripeptides
PAJ_RS04675	COG2850	peptidyl-arginine hydroxylation
PAJ_RS04680	COG2205	protein histidine kinase activity
PAJ_RS04690	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
PAJ_RS04695	COG2915	High frequency lysogenization protein hflD homolog
PAJ_RS04710	COG1187	pseudouridine synthase activity
PAJ_RS04715	COG0538	isocitrate dehydrogenase activity
PAJ_RS04775	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PAJ_RS04780	COG1309	transcriptional regulator
PAJ_RS04795	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PAJ_RS04810	COG2211	Major facilitator Superfamily
PAJ_RS04815	COG1397	ADP-ribosylglycohydrolase
PAJ_RS04820	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS04825	COG2188	Transcriptional regulator
PAJ_RS04830	COG0477	Major facilitator Superfamily
PAJ_RS04870	COG1619	proteins homologs of microcin C7 resistance protein MccF
PAJ_RS04880	COG2390	Transcriptional regulator
PAJ_RS04885	COG3959	Transketolase, thiamine diphosphate binding domain
PAJ_RS04890	COG3958	Transketolase
PAJ_RS04895	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
PAJ_RS04900	COG0668	transmembrane transport
PAJ_RS04910	COG2261	transglycosylase associated protein
PAJ_RS04925	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
PAJ_RS04930	COG3381	protein complex oligomerization
PAJ_RS04940	COG0697	spore germination
PAJ_RS04945	COG0518	GMP synthase (glutamine-hydrolyzing) activity
PAJ_RS04945	COG0519	Catalyzes the synthesis of GMP from XMP
PAJ_RS04965	COG2140	Oxalate decarboxylase
PAJ_RS04980	COG2723	6-phospho-beta-galactosidase activity
PAJ_RS04985	COG2190	(PTS) system
PAJ_RS04985	COG1263	PTS System
PAJ_RS04985	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PAJ_RS04990	COG3711	transcriptional antiterminator
PAJ_RS04995	COG0583	DNA-binding transcription factor activity
PAJ_RS05000	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
PAJ_RS05005	COG3002	Belongs to the UPF0753 family
PAJ_RS05010	COG1902	pentaerythritol trinitrate reductase activity
PAJ_RS05015	COG0640	Transcriptional regulator
PAJ_RS05050	COG2814	Major facilitator Superfamily
PAJ_RS05065	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PAJ_RS05070	COG4774	siderophore transport
PAJ_RS05075	COG2207	Transcriptional regulator
PAJ_RS05090	COG0154	amidase activity
PAJ_RS05115	COG0456	acetyltransferase
PAJ_RS05160	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
PAJ_RS05165	COG1304	FMN binding
PAJ_RS05180	COG0384	phenazine biosynthesis protein PhzF
PAJ_RS05190	COG1396	sequence-specific DNA binding
PAJ_RS05195	COG1247	-acetyltransferase
PAJ_RS05205	COG3539	Fimbrial protein
PAJ_RS05210	COG3539	Fimbrial protein
PAJ_RS05215	COG3188	usher protein
PAJ_RS05220	COG3121	Chaperone
PAJ_RS05225	COG3539	Fimbrial protein
PAJ_RS05235	COG2200	EAL domain
PAJ_RS05250	COG3468	outer membrane autotransporter barrel domain protein
PAJ_RS05255	COG0583	DNA-binding transcription factor activity
PAJ_RS05295	COG3038	cytochrome b561
PAJ_RS05300	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PAJ_RS05310	COG0531	amino acid
PAJ_RS05330	COG1403	HNH endonuclease
PAJ_RS05340	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
PAJ_RS05355	COG0386	Belongs to the glutathione peroxidase family
PAJ_RS05360	COG1846	Transcriptional regulator
PAJ_RS05365	COG0163	prenyltransferase activity
PAJ_RS05370	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
PAJ_RS05390	COG2814	Major facilitator Superfamily
PAJ_RS05390	COG0477	Major facilitator Superfamily
PAJ_RS05395	COG1082	Xylose isomerase domain protein TIM barrel
PAJ_RS05400	COG0673	inositol 2-dehydrogenase activity
PAJ_RS05410	COG0840	transmembrane signaling receptor activity
PAJ_RS05410	COG5278	phosphoserine phosphatase activity
PAJ_RS05425	COG2239	Acts as a magnesium transporter
PAJ_RS05455	COG2963	transposase activity
PAJ_RS05460	COG0012	GTP binding
PAJ_RS05465	COG0193	aminoacyl-tRNA hydrolase activity
PAJ_RS05480	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PAJ_RS05485	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
PAJ_RS05490	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
PAJ_RS05495	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
PAJ_RS05500	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PAJ_RS05515	COG2912	Transglutaminase-like superfamily
PAJ_RS05525	COG0387	Pfam Sodium calcium exchanger
PAJ_RS05530	COG4572	Cation transport regulator
PAJ_RS05535	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
PAJ_RS05540	COG0515	serine threonine protein kinase
PAJ_RS05570	COG1360	Flagellar Motor Protein
PAJ_RS05580	COG3707	response regulator
PAJ_RS05585	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PAJ_RS05590	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PAJ_RS05595	COG1116	anion transmembrane transporter activity
PAJ_RS05600	COG2146	nitrite reductase [NAD(P)H] activity
PAJ_RS05600	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
PAJ_RS05605	COG0243	molybdopterin cofactor binding
PAJ_RS05610	COG1648	precorrin-2 dehydrogenase activity
PAJ_RS05610	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
PAJ_RS05615	COG1349	DNA-binding transcription factor activity
PAJ_RS05620	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS05625	COG1879	ABC-type sugar transport system periplasmic component
PAJ_RS05635	COG1129	ABC transporter
PAJ_RS05640	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS05645	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS05650	COG4932	domain protein
PAJ_RS05670	COG1012	belongs to the aldehyde dehydrogenase family
PAJ_RS05675	COG3724	N-succinylarginine dihydrolase activity
PAJ_RS05680	COG2988	succinylglutamate desuccinylase activity
PAJ_RS05685	COG3678	ATP-independent chaperone mediated protein folding
PAJ_RS05690	COG0322	excinuclease ABC activity
PAJ_RS05700	COG0840	transmembrane signaling receptor activity
PAJ_RS05710	COG2814	Major facilitator Superfamily
PAJ_RS05715	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PAJ_RS05725	COG1823	symporter activity
PAJ_RS05730	COG1988	membrane-bound metal-dependent
PAJ_RS05735	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PAJ_RS05755	COG3137	Salt-induced outer membrane protein
PAJ_RS05760	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PAJ_RS05770	COG0291	Belongs to the bacterial ribosomal protein bL35 family
PAJ_RS05785	COG0072	phenylalanine-tRNA ligase activity
PAJ_RS05785	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PAJ_RS05790	COG0776	regulation of translation
PAJ_RS05800	COG0386	Belongs to the glutathione peroxidase family
PAJ_RS05820	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
PAJ_RS05825	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PAJ_RS05830	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
PAJ_RS05835	COG0574	Belongs to the PEP-utilizing enzyme family
PAJ_RS05835	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PAJ_RS05845	COG0628	permease
PAJ_RS05850	COG0247	lactate metabolic process
PAJ_RS05850	COG0277	FAD linked oxidase domain protein
PAJ_RS05860	COG0316	Belongs to the HesB IscA family
PAJ_RS05865	COG0719	Fe-S assembly protein
PAJ_RS05870	COG0396	ATPase activity
PAJ_RS05875	COG0719	Fe-S assembly protein
PAJ_RS05885	COG2166	iron-sulfur cluster assembly
PAJ_RS05890	COG1388	LysM domain
PAJ_RS05890	COG1376	ErfK ybiS ycfS ynhG family protein
PAJ_RS05925	COG0307	riboflavin synthase, alpha
PAJ_RS05930	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
PAJ_RS05935	COG2814	Major facilitator Superfamily
PAJ_RS05940	COG0583	DNA-binding transcription factor activity
PAJ_RS05950	COG0791	NLP P60 protein
PAJ_RS05955	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
PAJ_RS05960	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
PAJ_RS05965	COG0346	lactoylglutathione lyase activity
PAJ_RS05970	COG1902	pentaerythritol trinitrate reductase activity
PAJ_RS05975	COG1309	transcriptional regulator
PAJ_RS05980	COG4989	oxidoreductase activity
PAJ_RS05995	COG1289	transmembrane transporter activity
PAJ_RS06000	COG1566	PFAM secretion protein HlyD family protein
PAJ_RS06010	COG1846	Transcriptional regulator
PAJ_RS06015	COG3133	Outer membrane lipoprotein
PAJ_RS06020	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
PAJ_RS06030	COG2200	EAL domain
PAJ_RS06035	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS06050	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
PAJ_RS06055	COG0753	catalase activity
PAJ_RS06060	COG3729	General stress protein
PAJ_RS06065	COG4294	response to UV
PAJ_RS06115	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PAJ_RS06125	COG1309	transcriptional regulator
PAJ_RS06155	COG2351	hydroxyisourate hydrolase activity
PAJ_RS06160	COG3895	Periplasmic Protein
PAJ_RS06170	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PAJ_RS06180	COG0625	glutathione transferase activity
PAJ_RS06190	COG0504	CTP synthase activity
PAJ_RS06195	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PAJ_RS06200	COG4660	Part of a membrane complex involved in electron transport
PAJ_RS06205	COG4659	FMN binding
PAJ_RS06210	COG4658	electron transport chain
PAJ_RS06215	COG4656	Part of a membrane complex involved in electron transport
PAJ_RS06220	COG2878	Part of a membrane complex involved in electron transport
PAJ_RS06225	COG4657	Part of a membrane complex involved in electron transport
PAJ_RS06240	COG1879	ABC-type sugar transport system periplasmic component
PAJ_RS06245	COG1129	ABC transporter
PAJ_RS06250	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS06255	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS06300	COG3023	N-Acetylmuramoyl-L-alanine amidase
PAJ_RS06305	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
PAJ_RS06320	COG0668	transmembrane transport
PAJ_RS06335	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
PAJ_RS06345	COG1522	sequence-specific DNA binding
PAJ_RS06350	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
PAJ_RS06365	COG1278	Cold shock
PAJ_RS06370	COG3122	Protein conserved in bacteria
PAJ_RS06405	COG2160	L-arabinose isomerase activity
PAJ_RS06410	COG1069	ribulokinase activity
PAJ_RS06415	COG1879	ABC-type sugar transport system periplasmic component
PAJ_RS06425	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS06435	COG0673	inositol 2-dehydrogenase activity
PAJ_RS06440	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
PAJ_RS06450	COG1482	cell wall glycoprotein biosynthetic process
PAJ_RS06485	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PAJ_RS06490	COG4977	sequence-specific DNA binding
PAJ_RS06495	COG4290	ribonuclease
PAJ_RS06520	COG3135	benzoate transporter
PAJ_RS06525	COG1396	sequence-specific DNA binding
PAJ_RS06530	COG1335	isochorismatase
PAJ_RS06535	COG4772	TonB-dependent receptor
PAJ_RS06540	COG2084	Dehydrogenase
PAJ_RS06550	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PAJ_RS06585	COG2353	YceI-like domain
PAJ_RS06590	COG0205	6-phosphofructokinase activity
PAJ_RS06660	COG1879	ABC-type sugar transport system periplasmic component
PAJ_RS06665	COG1129	ABC transporter
PAJ_RS06670	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS06675	COG1737	Transcriptional regulator
PAJ_RS06680	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS06685	COG2130	NADP-dependent
PAJ_RS06690	COG0671	phosphoesterase, PA-phosphatase related
PAJ_RS06695	COG0840	transmembrane signaling receptor activity
PAJ_RS06700	COG0745	RESPONSE REGULATOR receiver
PAJ_RS06705	COG0390	transport system, permease component
PAJ_RS06710	COG4619	ABC transporter
PAJ_RS06715	COG0110	maltose O-acetyltransferase activity
PAJ_RS06730	COG0583	DNA-binding transcription factor activity
PAJ_RS06735	COG4221	oxidoreductase activity
PAJ_RS06740	COG0583	DNA-binding transcription factor activity
PAJ_RS06745	COG3366	ferrous iron transmembrane transporter activity
PAJ_RS06750	COG0700	Nucleoside recognition
PAJ_RS06755	COG1473	amidohydrolase
PAJ_RS06760	COG1393	Belongs to the ArsC family
PAJ_RS06765	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
PAJ_RS06800	COG0346	lactoylglutathione lyase activity
PAJ_RS06810	COG1902	pentaerythritol trinitrate reductase activity
PAJ_RS06820	COG1785	Belongs to the alkaline phosphatase family
PAJ_RS06835	COG3833	ABC-type maltose transport systems, permease component
PAJ_RS06840	COG1175	transmembrane transport
PAJ_RS06875	COG1640	4-alpha-glucanotransferase
PAJ_RS06880	COG0058	SHG alpha-glucan phosphorylase activity
PAJ_RS06890	COG2223	nitrite transmembrane transporter activity
PAJ_RS06900	COG1649	PFAM Uncharacterised BCR, COG1649
PAJ_RS06905	COG0243	molybdopterin cofactor binding
PAJ_RS06910	COG1285	pathogenesis
PAJ_RS06925	COG2963	transposase activity
PAJ_RS06930	COG2801	Transposase and inactivated derivatives
PAJ_RS06985	COG0791	NLP P60 protein
PAJ_RS06995	COG0494	nUDIX hydrolase
PAJ_RS07005	COG0523	cobalamin synthesis protein
PAJ_RS07015	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS07055	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PAJ_RS07060	COG1012	belongs to the aldehyde dehydrogenase family
PAJ_RS07080	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
PAJ_RS07095	COG0840	transmembrane signaling receptor activity
PAJ_RS07110	COG3550	peptidyl-serine autophosphorylation
PAJ_RS07115	COG1396	sequence-specific DNA binding
PAJ_RS07130	COG2211	Major facilitator Superfamily
PAJ_RS07145	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS07165	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PAJ_RS07170	COG0339	signal peptide processing
PAJ_RS07180	COG1529	Aldehyde oxidase and xanthine dehydrogenase
PAJ_RS07190	COG0402	S-adenosylhomocysteine deaminase activity
PAJ_RS07195	COG4221	oxidoreductase activity
PAJ_RS07215	COG0477	Major facilitator Superfamily
PAJ_RS07240	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
PAJ_RS07245	COG1940	carbohydrate kinase activity
PAJ_RS07250	COG0583	DNA-binding transcription factor activity
PAJ_RS07255	COG2814	Major facilitator Superfamily
PAJ_RS07265	COG3038	cytochrome b561
PAJ_RS07270	COG2814	Major facilitator Superfamily
PAJ_RS07280	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
PAJ_RS07285	COG0747	negative chemotaxis
PAJ_RS07290	COG2195	Cleaves the N-terminal amino acid of tripeptides
PAJ_RS07295	COG0840	transmembrane signaling receptor activity
PAJ_RS07310	COG5383	Protein conserved in bacteria
PAJ_RS07320	COG0583	DNA-binding transcription factor activity
PAJ_RS07325	COG2840	Smr protein MutS2
PAJ_RS07330	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PAJ_RS07340	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
PAJ_RS07345	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
PAJ_RS07355	COG0531	amino acid
PAJ_RS07365	COG0745	RESPONSE REGULATOR receiver
PAJ_RS07370	COG2205	protein histidine kinase activity
PAJ_RS07375	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
PAJ_RS07385	COG3591	Belongs to the peptidase S1B family
PAJ_RS07390	COG1643	Atp-dependent helicase
PAJ_RS07400	COG3784	Protein of unknown function (DUF1318)
PAJ_RS07410	COG2911	Protein conserved in bacteria
PAJ_RS07415	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAJ_RS07425	COG1285	pathogenesis
PAJ_RS07430	COG0037	tRNA processing
PAJ_RS07440	COG4166	transmembrane transport
PAJ_RS07445	COG2866	Carboxypeptidase
PAJ_RS07450	COG4948	Mandelate Racemase Muconate Lactonizing
PAJ_RS07455	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
PAJ_RS07465	COG3768	UPF0283 membrane protein
PAJ_RS07470	COG3106	COG3106 Predicted ATPase
PAJ_RS07480	COG1983	PspC domain protein
PAJ_RS07490	COG1842	Phage shock protein A
PAJ_RS07495	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
PAJ_RS07510	COG4168	peptide transport system, permease
PAJ_RS07520	COG4172	Belongs to the ABC transporter superfamily
PAJ_RS07525	COG4172	Belongs to the ABC transporter superfamily
PAJ_RS07530	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
PAJ_RS07535	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
PAJ_RS07535	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
PAJ_RS07540	COG0583	DNA-binding transcription factor activity
PAJ_RS07545	COG1263	PTS System
PAJ_RS07545	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PAJ_RS07555	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
PAJ_RS07560	COG1966	Carbon starvation protein
PAJ_RS07570	COG5001	Diguanylate cyclase
PAJ_RS07575	COG1024	Enoyl-CoA hydratase
PAJ_RS07580	COG0235	Class ii aldolase
PAJ_RS07595	COG0023	Translation Initiation Factor
PAJ_RS07600	COG0284	orotidine-5'-phosphate decarboxylase activity
PAJ_RS07605	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
PAJ_RS07610	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
PAJ_RS07615	COG0671	phosphoesterase, PA-phosphatase related
PAJ_RS07650	COG0616	signal peptide processing
PAJ_RS07655	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS07665	COG2851	Citrate transporter
PAJ_RS07670	COG1187	pseudouridine synthase activity
PAJ_RS07685	COG0009	L-threonylcarbamoyladenylate synthase
PAJ_RS07690	COG0613	PHP domain protein
PAJ_RS07695	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PAJ_RS07705	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PAJ_RS07715	COG0133	tryptophan synthase activity
PAJ_RS07720	COG0159	tryptophan synthase activity
PAJ_RS07735	COG0727	PFAM Uncharacterised protein family (UPF0153)
PAJ_RS07745	COG2917	probably involved in intracellular septation
PAJ_RS07750	COG1607	acyl-coa hydrolase
PAJ_RS07760	COG2350	Protein conserved in bacteria
PAJ_RS07770	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAJ_RS07775	COG3099	Belongs to the UPF0263 family
PAJ_RS07790	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PAJ_RS07795	COG0601	transmembrane transport
PAJ_RS07805	COG4166	transmembrane transport
PAJ_RS07810	COG2095	MarC family integral membrane protein
PAJ_RS07815	COG1012	belongs to the aldehyde dehydrogenase family
PAJ_RS07815	COG1454	alcohol dehydrogenase
PAJ_RS07840	COG1210	Utp--glucose-1-phosphate uridylyltransferase
PAJ_RS07845	COG0745	RESPONSE REGULATOR receiver
PAJ_RS07850	COG1752	Esterase of the alpha-beta hydrolase superfamily
PAJ_RS07855	COG3012	SEC-C Motif Domain Protein
PAJ_RS07860	COG0788	formyltetrahydrofolate deformylase activity
PAJ_RS07890	COG0708	Exodeoxyribonuclease III
PAJ_RS07905	COG0778	Nitroreductase
PAJ_RS07910	COG0616	signal peptide processing
PAJ_RS07915	COG0252	asparaginase activity
PAJ_RS07920	COG1335	isochorismatase
PAJ_RS07925	COG3139	Protein of unknown function (DUF1315)
PAJ_RS07930	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PAJ_RS07945	COG0656	L-ascorbic acid biosynthetic process
PAJ_RS07950	COG3713	MltA-interacting MipA family protein
PAJ_RS07955	COG2766	serine protein kinase
PAJ_RS07960	COG2718	Belongs to the UPF0229 family
PAJ_RS07985	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PAJ_RS07990	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PAJ_RS07995	COG2719	SpoVR family
PAJ_RS08000	COG2186	Transcriptional regulator
PAJ_RS08015	COG0179	Fumarylacetoacetate (FAA) hydrolase
PAJ_RS08025	COG0850	regulation of cytokinetic process
PAJ_RS08030	COG2894	cell division
PAJ_RS08035	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
PAJ_RS08040	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
PAJ_RS08045	COG0318	PFAM AMP-dependent synthetase and ligase
PAJ_RS08050	COG3065	identical protein binding
PAJ_RS08060	COG1199	ATP-dependent helicase activity
PAJ_RS08065	COG0251	oxidation-reduction process
PAJ_RS08070	COG3140	Belongs to the UPF0181 family
PAJ_RS08075	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PAJ_RS08085	COG1760	l-serine dehydratase
PAJ_RS08090	COG2200	EAL domain
PAJ_RS08095	COG1253	flavin adenine dinucleotide binding
PAJ_RS08100	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS08100	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PAJ_RS08105	COG3715	PTS system
PAJ_RS08110	COG3716	PTS system mannose fructose sorbose family IID component
PAJ_RS08120	COG2226	methyltransferase
PAJ_RS08150	COG2814	Major facilitator Superfamily
PAJ_RS08155	COG0501	Belongs to the peptidase M48B family
PAJ_RS08165	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
PAJ_RS08170	COG1956	GAF domain-containing protein
PAJ_RS08175	COG2995	paraquat-inducible protein a
PAJ_RS08180	COG3008	intermembrane lipid transfer
PAJ_RS08185	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PAJ_RS08185	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
PAJ_RS08190	COG3813	Protein conserved in bacteria
PAJ_RS08195	COG0477	Major facilitator Superfamily
PAJ_RS08200	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
PAJ_RS08240	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
PAJ_RS08255	COG0840	transmembrane signaling receptor activity
PAJ_RS08275	COG2188	Transcriptional regulator
PAJ_RS08290	COG1276	copper resistance
PAJ_RS08295	COG2372	response to copper ion
PAJ_RS08305	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
PAJ_RS08310	COG1770	oligopeptidase
PAJ_RS08315	COG2979	Protein of unknown function (DUF533)
PAJ_RS08320	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
PAJ_RS08325	COG0800	Aldolase
PAJ_RS08330	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
PAJ_RS08335	COG1737	Transcriptional regulator
PAJ_RS08340	COG0469	pyruvate kinase activity
PAJ_RS08350	COG1560	Kdo2-lipid A biosynthetic process
PAJ_RS08355	COG0739	heme binding
PAJ_RS08360	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
PAJ_RS08370	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PAJ_RS08380	COG0632	four-way junction helicase activity
PAJ_RS08390	COG0217	transcriptional regulatory protein
PAJ_RS08395	COG0494	nUDIX hydrolase
PAJ_RS08405	COG1801	Protein of unknown function DUF72
PAJ_RS08410	COG3788	relative of glutathione S-transferase, MAPEG superfamily
PAJ_RS08415	COG2226	methyltransferase
PAJ_RS08420	COG0500	methyltransferase
PAJ_RS08425	COG1280	lysine exporter protein (LysE YggA)
PAJ_RS08440	COG3142	Participates in the control of copper homeostasis
PAJ_RS08445	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
PAJ_RS08450	COG3102	Protein conserved in bacteria
PAJ_RS08455	COG0018	arginyl-trna synthetase
PAJ_RS08490	COG0745	RESPONSE REGULATOR receiver
PAJ_RS08500	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
PAJ_RS08505	COG0840	transmembrane signaling receptor activity
PAJ_RS08510	COG0840	transmembrane signaling receptor activity
PAJ_RS08515	COG0835	chemotaxis
PAJ_RS08550	COG1877	trehalose-phosphatase activity
PAJ_RS08555	COG0745	RESPONSE REGULATOR receiver
PAJ_RS08565	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PAJ_RS08595	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PAJ_RS08605	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PAJ_RS08620	COG0477	Major facilitator Superfamily
PAJ_RS08630	COG1702	phosphate starvation-inducible protein PhoH
PAJ_RS08640	COG2822	iron ion transport
PAJ_RS08650	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
PAJ_RS08655	COG0506	proline dehydrogenase activity
PAJ_RS08655	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
PAJ_RS08655	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
PAJ_RS08660	COG2181	nitrate reductase activity
PAJ_RS08665	COG4763	Acyl-transferase
PAJ_RS08670	COG0494	nUDIX hydrolase
PAJ_RS08675	COG4763	Acyl-transferase
PAJ_RS08680	COG1126	abc transporter atp-binding protein
PAJ_RS08685	COG0765	amino acid transport
PAJ_RS08690	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PAJ_RS08745	COG0318	PFAM AMP-dependent synthetase and ligase
PAJ_RS08750	COG3958	Transketolase
PAJ_RS08755	COG3959	Transketolase, thiamine diphosphate binding domain
PAJ_RS08760	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS08765	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS08835	COG0366	Alpha amylase catalytic
PAJ_RS08870	COG1677	Flagellar hook-basal body complex protein FliE
PAJ_RS08880	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
PAJ_RS08885	COG1317	bacterial-type flagellum organization
PAJ_RS08895	COG2882	bacterial-type flagellum organization
PAJ_RS08905	COG1580	Controls the rotational direction of flagella during chemotaxis
PAJ_RS08910	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
PAJ_RS08925	COG1338	Plays a role in the flagellum-specific transport system
PAJ_RS08945	COG0840	transmembrane signaling receptor activity
PAJ_RS08970	COG1215	transferase activity, transferring glycosyl groups
PAJ_RS08975	COG5475	Uncharacterized small protein (DUF2158)
PAJ_RS08980	COG2354	Protein conserved in bacteria
PAJ_RS08990	COG3727	T/G mismatch-specific endonuclease activity
PAJ_RS08995	COG0270	DNA (cytosine-5-)-methyltransferase activity
PAJ_RS09000	COG0840	transmembrane signaling receptor activity
PAJ_RS09010	COG1418	mRNA catabolic process
PAJ_RS09040	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
PAJ_RS09055	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PAJ_RS09065	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
PAJ_RS09075	COG0071	Belongs to the small heat shock protein (HSP20) family
PAJ_RS09085	COG3711	transcriptional antiterminator
PAJ_RS09095	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
PAJ_RS09100	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
PAJ_RS09210	COG0515	serine threonine protein kinase
PAJ_RS09255	COG3755	Protein conserved in bacteria
PAJ_RS09315	COG0534	Mate efflux family protein
PAJ_RS09320	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PAJ_RS09330	COG2252	PERMEase
PAJ_RS09345	COG0191	fructose-bisphosphate aldolase activity
PAJ_RS09360	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS09365	COG1129	ABC transporter
PAJ_RS09370	COG4191	Histidine kinase
PAJ_RS09370	COG0784	Response regulator, receiver
PAJ_RS09375	COG3639	organic phosphonate transmembrane transporter activity
PAJ_RS09385	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
PAJ_RS09395	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
PAJ_RS09400	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
PAJ_RS09405	COG3454	Phosphonate metabolism
PAJ_RS09410	COG4778	phosphonate C-P lyase system protein PhnL
PAJ_RS09415	COG4107	phosphonate C-P lyase system protein PhnK
PAJ_RS09420	COG3627	carbon phosphorus lyase activity
PAJ_RS09430	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
PAJ_RS09435	COG3624	Phosphonate C-P lyase system protein PhnG
PAJ_RS09445	COG1335	isochorismatase
PAJ_RS09450	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
PAJ_RS09460	COG1522	sequence-specific DNA binding
PAJ_RS09470	COG1473	amidohydrolase
PAJ_RS09475	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PAJ_RS09495	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PAJ_RS09500	COG0601	transmembrane transport
PAJ_RS09510	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PAJ_RS09520	COG1012	belongs to the aldehyde dehydrogenase family
PAJ_RS09530	COG0583	DNA-binding transcription factor activity
PAJ_RS09540	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS09560	COG0840	transmembrane signaling receptor activity
PAJ_RS09565	COG3217	Mosc domain protein beta barrel domain protein
PAJ_RS09565	COG0633	Ferredoxin
PAJ_RS09570	COG3591	Belongs to the peptidase S1B family
PAJ_RS09570	COG1864	DNA RNA non-specific endonuclease
PAJ_RS09590	COG1522	sequence-specific DNA binding
PAJ_RS09595	COG1280	lysine exporter protein (LysE YggA)
PAJ_RS09605	COG0277	FAD linked oxidase domain protein
PAJ_RS09610	COG1442	glycosyl transferase family 8
PAJ_RS09665	COG1012	belongs to the aldehyde dehydrogenase family
PAJ_RS09690	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PAJ_RS09695	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
PAJ_RS09700	COG1609	Transcriptional regulator
PAJ_RS09705	COG2926	Belongs to the UPF0265 family
PAJ_RS09710	COG1289	transmembrane transporter activity
PAJ_RS09720	COG2925	Exonuclease
PAJ_RS09725	COG2610	gluconate transmembrane transporter activity
PAJ_RS09730	COG3622	Belongs to the hyi family
PAJ_RS09735	COG0235	Class ii aldolase
PAJ_RS09740	COG3395	kinase activity
PAJ_RS09745	COG2084	Dehydrogenase
PAJ_RS09750	COG1349	DNA-binding transcription factor activity
PAJ_RS09755	COG0531	amino acid
PAJ_RS09760	COG0174	glutamine synthetase
PAJ_RS09765	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
PAJ_RS09775	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PAJ_RS09780	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PAJ_RS09785	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
PAJ_RS09790	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
PAJ_RS09795	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PAJ_RS09805	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
PAJ_RS09810	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
PAJ_RS09820	COG0140	phosphoribosyl-ATP diphosphatase activity
PAJ_RS09820	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
PAJ_RS09835	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PAJ_RS09850	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
PAJ_RS09935	COG0463	Glycosyl transferase, family 2
PAJ_RS09935	COG1216	Glycosyl transferase, family 2
PAJ_RS09975	COG2982	Protein involved in outer membrane biogenesis
PAJ_RS09980	COG0717	Belongs to the dCTP deaminase family
PAJ_RS09985	COG0572	uridine kinase
PAJ_RS09995	COG3447	MASE1 domain protein
PAJ_RS09995	COG5002	protein histidine kinase activity
PAJ_RS09995	COG5001	Diguanylate cyclase
PAJ_RS10000	COG5002	protein histidine kinase activity
PAJ_RS10000	COG3447	MASE1 domain protein
PAJ_RS10000	COG5001	Diguanylate cyclase
PAJ_RS10005	COG0443	Heat shock 70 kDa protein
PAJ_RS10015	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PAJ_RS10025	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PAJ_RS10035	COG2205	protein histidine kinase activity
PAJ_RS10040	COG0745	RESPONSE REGULATOR receiver
PAJ_RS10045	COG0826	peptidase U32
PAJ_RS10055	COG0246	Mannitol dehydrogenase
PAJ_RS10060	COG1802	Transcriptional regulator
PAJ_RS10095	COG3634	alkyl hydroperoxide reductase activity
PAJ_RS10105	COG0456	acetyltransferase
PAJ_RS10110	COG0489	protein tyrosine kinase activity
PAJ_RS10115	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PAJ_RS10115	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PAJ_RS10120	COG1380	Effector of murein hydrolase LrgA
PAJ_RS10125	COG1346	cytolysis
PAJ_RS10135	COG0281	malic enzyme
PAJ_RS10140	COG2949	membrane
PAJ_RS10165	COG2311	Membrane
PAJ_RS10175	COG0477	Major facilitator Superfamily
PAJ_RS10180	COG0583	DNA-binding transcription factor activity
PAJ_RS10195	COG1120	ATPase activity
PAJ_RS10200	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PAJ_RS10205	COG0833	amino acid
PAJ_RS10210	COG0583	DNA-binding transcription factor activity
PAJ_RS10220	COG2855	membrane
PAJ_RS10230	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
PAJ_RS10235	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
PAJ_RS10235	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
PAJ_RS10235	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
PAJ_RS10240	COG1105	Belongs to the carbohydrate kinase PfkB family
PAJ_RS10245	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS10245	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS10250	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
PAJ_RS10255	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PAJ_RS10265	COG0477	Major facilitator Superfamily
PAJ_RS10275	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PAJ_RS10280	COG0523	cobalamin synthesis protein
PAJ_RS10285	COG0671	phosphoesterase, PA-phosphatase related
PAJ_RS10290	COG0791	NLP P60 protein
PAJ_RS10295	COG2200	EAL domain
PAJ_RS10300	COG4166	transmembrane transport
PAJ_RS10305	COG4174	ABC transporter (Permease)
PAJ_RS10310	COG4239	(ABC) transporter, permease
PAJ_RS10315	COG4172	Belongs to the ABC transporter superfamily
PAJ_RS10325	COG2814	Major facilitator Superfamily
PAJ_RS10335	COG1061	Type III restriction enzyme res subunit
PAJ_RS10340	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
PAJ_RS10345	COG3081	Nucleoid-associated protein
PAJ_RS10350	COG3082	Protein of unknown function (DUF1414)
PAJ_RS10380	COG0312	modulator of DNA gyrase
PAJ_RS10385	COG0312	modulator of DNA gyrase
PAJ_RS10390	COG3118	belongs to the thioredoxin family
PAJ_RS10395	COG4178	(ABC) transporter
PAJ_RS10405	COG1595	DNA-templated transcription, initiation
PAJ_RS10435	COG2211	Major facilitator Superfamily
PAJ_RS10440	COG0668	transmembrane transport
PAJ_RS10450	COG4615	Cyclic peptide transporter
PAJ_RS10455	COG3145	DNA-N1-methyladenine dioxygenase activity
PAJ_RS10480	COG1132	(ABC) transporter
PAJ_RS10500	COG2223	nitrite transmembrane transporter activity
PAJ_RS10505	COG0642	Histidine kinase
PAJ_RS10505	COG2198	Histidine kinase
PAJ_RS10510	COG2197	response regulator
PAJ_RS10525	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
PAJ_RS10530	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PAJ_RS10535	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PAJ_RS10540	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
PAJ_RS10550	COG4575	ribosome binding
PAJ_RS10560	COG2153	protein acetylation
PAJ_RS10570	COG1007	ATP synthesis coupled electron transport
PAJ_RS10575	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
PAJ_RS10580	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
PAJ_RS10585	COG0713	ATP synthesis coupled electron transport
PAJ_RS10590	COG0839	Belongs to the complex I subunit 6 family
PAJ_RS10600	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
PAJ_RS10620	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
PAJ_RS10620	COG0649	NAD binding
PAJ_RS10635	COG0583	DNA-binding transcription factor activity
PAJ_RS10640	COG0436	Aminotransferase
PAJ_RS10645	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
PAJ_RS10650	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PAJ_RS10660	COG3092	negative regulation of chromosome organization
PAJ_RS10665	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PAJ_RS10670	COG0857	belongs to the CobB CobQ family
PAJ_RS10670	COG0280	phosphate acetyltransferase
PAJ_RS10675	COG3842	ATPase activity
PAJ_RS10685	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
PAJ_RS10695	COG1176	ABC-type spermidine putrescine transport system, permease component I
PAJ_RS10700	COG0395	ABC-type sugar transport system, permease component
PAJ_RS10715	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
PAJ_RS10720	COG0625	glutathione transferase activity
PAJ_RS10725	COG1090	epimerase
PAJ_RS10735	COG1070	Carbohydrate kinase
PAJ_RS10740	COG0246	Mannitol dehydrogenase
PAJ_RS10750	COG4598	ABC transporter
PAJ_RS10755	COG4160	amino acid transport
PAJ_RS10760	COG4215	(ABC) transporter
PAJ_RS10770	COG0163	prenyltransferase activity
PAJ_RS10775	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
PAJ_RS10780	COG1286	toxin biosynthetic process
PAJ_RS10785	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
PAJ_RS10790	COG0285	dihydrofolate synthase activity
PAJ_RS10800	COG0586	Pfam SNARE associated Golgi protein
PAJ_RS10810	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PAJ_RS10825	COG0642	Histidine kinase
PAJ_RS10855	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PAJ_RS10865	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PAJ_RS10880	COG3101	peptidyl-lysine hydroxylation
PAJ_RS10885	COG0730	response to heat
PAJ_RS10895	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
PAJ_RS10910	COG0840	transmembrane signaling receptor activity
PAJ_RS10915	COG2062	phosphohistidine phosphatase, SixA
PAJ_RS10925	COG0183	Belongs to the thiolase family
PAJ_RS10930	COG3691	Protein conserved in bacteria
PAJ_RS10935	COG2067	long-chain fatty acid transport protein
PAJ_RS10945	COG4235	cytochrome complex assembly
PAJ_RS10945	COG3088	subunit of a heme lyase
PAJ_RS10950	COG4235	cytochrome complex assembly
PAJ_RS10950	COG3088	subunit of a heme lyase
PAJ_RS10960	COG1138	Cytochrome C-type biogenesis protein
PAJ_RS10965	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
PAJ_RS10970	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PAJ_RS10975	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PAJ_RS10980	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PAJ_RS10990	COG2116	formate transmembrane transporter activity
PAJ_RS11010	COG0584	glycerophosphoryl diester phosphodiesterase
PAJ_RS11015	COG3842	ATPase activity
PAJ_RS11020	COG3833	ABC-type maltose transport systems, permease component
PAJ_RS11060	COG3121	Chaperone
PAJ_RS11125	COG2223	nitrite transmembrane transporter activity
PAJ_RS11165	COG0436	Aminotransferase
PAJ_RS11175	COG3275	phosphorelay sensor kinase activity
PAJ_RS11180	COG3279	Response regulator of the LytR AlgR family
PAJ_RS11185	COG0837	glucose binding
PAJ_RS11190	COG3961	Belongs to the TPP enzyme family
PAJ_RS11195	COG0667	Aldo Keto reductase
PAJ_RS11205	COG4122	O-methyltransferase activity
PAJ_RS11210	COG1914	H( )-stimulated, divalent metal cation uptake system
PAJ_RS11215	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
PAJ_RS11220	COG2963	transposase activity
PAJ_RS11225	COG2801	Transposase and inactivated derivatives
PAJ_RS11245	COG2116	formate transmembrane transporter activity
PAJ_RS11250	COG3415	Transposase
PAJ_RS11255	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PAJ_RS11290	COG0583	DNA-binding transcription factor activity
PAJ_RS11295	COG0385	Bile acid
PAJ_RS11300	COG3530	Putative quorum-sensing-regulated virulence factor
PAJ_RS11330	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PAJ_RS11340	COG2205	protein histidine kinase activity
PAJ_RS11345	COG0745	RESPONSE REGULATOR receiver
PAJ_RS11350	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
PAJ_RS11355	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
PAJ_RS11360	COG4208	sulfate ABC transporter
PAJ_RS11365	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
PAJ_RS11385	COG0456	acetyltransferase
PAJ_RS11395	COG0408	coproporphyrinogen oxidase activity
PAJ_RS11405	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
PAJ_RS11410	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
PAJ_RS11415	COG3493	citrate carrier protein
PAJ_RS11435	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
PAJ_RS11450	COG1349	DNA-binding transcription factor activity
PAJ_RS11460	COG1129	ABC transporter
PAJ_RS11465	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS11470	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS11475	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
PAJ_RS11480	COG1940	carbohydrate kinase activity
PAJ_RS11485	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS11490	COG0494	nUDIX hydrolase
PAJ_RS11505	COG3850	Histidine kinase
PAJ_RS11510	COG2197	response regulator
PAJ_RS11515	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PAJ_RS11520	COG1393	Belongs to the ArsC family
PAJ_RS11525	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PAJ_RS11535	COG0400	carboxylic ester hydrolase activity
PAJ_RS11540	COG1444	tRNA N-acetyltransferase activity
PAJ_RS11545	COG2321	neutral zinc metallopeptidase
PAJ_RS11555	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
PAJ_RS11560	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PAJ_RS11565	COG2716	regulation of RNA biosynthetic process
PAJ_RS11570	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
PAJ_RS11575	COG0628	permease
PAJ_RS11585	COG2211	Major facilitator Superfamily
PAJ_RS11595	COG3706	GGDEF domain
PAJ_RS11600	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
PAJ_RS11605	COG3842	ATPase activity
PAJ_RS11615	COG1178	ABC-type Fe3 transport system permease component
PAJ_RS11620	COG1840	ABC-type Fe3 transport system, periplasmic component
PAJ_RS11625	COG1609	Transcriptional regulator
PAJ_RS11630	COG4783	chaperone-mediated protein folding
PAJ_RS11635	COG1393	Belongs to the ArsC family
PAJ_RS11640	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PAJ_RS11645	COG2233	PERMEase
PAJ_RS11655	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
PAJ_RS11660	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
PAJ_RS11665	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
PAJ_RS11675	COG0573	inorganic phosphate transmembrane transporter activity
PAJ_RS11690	COG0500	methyltransferase
PAJ_RS11700	COG2239	Acts as a magnesium transporter
PAJ_RS11750	COG1196	nuclear chromosome segregation
PAJ_RS11770	COG5314	conjugation
PAJ_RS11805	COG0582	viral genome integration into host DNA
PAJ_RS11810	COG0518	GMP synthase (glutamine-hydrolyzing) activity
PAJ_RS11810	COG0519	Catalyzes the synthesis of GMP from XMP
PAJ_RS11815	COG0517	IMP dehydrogenase activity
PAJ_RS11815	COG0516	GMP reductase activity
PAJ_RS11835	COG4993	Dehydrogenase
PAJ_RS11845	COG1160	GTP binding
PAJ_RS11850	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PAJ_RS11855	COG2976	Protein conserved in bacteria
PAJ_RS11860	COG0124	histidyl-tRNA synthetase
PAJ_RS11870	COG1426	Protein conserved in bacteria
PAJ_RS11880	COG0820	rRNA (adenine-C2-)-methyltransferase activity
PAJ_RS11885	COG0105	UTP biosynthetic process
PAJ_RS11890	COG4953	penicillin-binding protein 1C
PAJ_RS11895	COG2373	Large extracellular alpha-helical protein
PAJ_RS11910	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
PAJ_RS11920	COG1959	2 iron, 2 sulfur cluster binding
PAJ_RS11930	COG0483	inositol monophosphate 1-phosphatase activity
PAJ_RS11940	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
PAJ_RS11950	COG3711	transcriptional antiterminator
PAJ_RS11955	COG2814	Major facilitator Superfamily
PAJ_RS11960	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PAJ_RS11970	COG0347	Belongs to the P(II) protein family
PAJ_RS11975	COG2204	response regulator
PAJ_RS11980	COG3170	Tfp pilus assembly protein FimV
PAJ_RS11985	COG2205	protein histidine kinase activity
PAJ_RS11990	COG0047	phosphoribosylformylglycinamidine synthase activity
PAJ_RS11990	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PAJ_RS11995	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
PAJ_RS12005	COG0560	Phosphoserine phosphatase
PAJ_RS12010	COG1737	Transcriptional regulator
PAJ_RS12015	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
PAJ_RS12020	COG0736	holo-[acyl-carrier-protein] synthase activity
PAJ_RS12025	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
PAJ_RS12030	COG1381	Involved in DNA repair and RecF pathway recombination
PAJ_RS12040	COG0571	ribonuclease III activity
PAJ_RS12050	COG0481	GTPase activity
PAJ_RS12055	COG3086	response to oxidative stress
PAJ_RS12060	COG3026	antisigma factor binding
PAJ_RS12075	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
PAJ_RS12085	COG0513	Belongs to the DEAD box helicase family
PAJ_RS12100	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
PAJ_RS12105	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PAJ_RS12110	COG0497	DNA recombination
PAJ_RS12115	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PAJ_RS12120	COG2914	Belongs to the UPF0125 (RnfH) family
PAJ_RS12125	COG2867	negative regulation of translational initiation
PAJ_RS12140	COG0582	viral genome integration into host DNA
PAJ_RS12170	COG2963	transposase activity
PAJ_RS12245	COG4771	TonB-dependent receptor
PAJ_RS12250	COG4607	ABC-type enterochelin transport system periplasmic component
PAJ_RS12260	COG4605	iron ion homeostasis
PAJ_RS12265	COG4604	ABC transporter, ATP-binding protein
PAJ_RS12270	COG1414	Transcriptional regulator
PAJ_RS12275	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
PAJ_RS12280	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PAJ_RS12285	COG3386	PFAM SMP-30 Gluconolaconase
PAJ_RS12315	COG0604	alcohol dehydrogenase
PAJ_RS12320	COG1733	regulation of RNA biosynthetic process
PAJ_RS12330	COG2249	NAD(P)H dehydrogenase (quinone) activity
PAJ_RS12335	COG0583	DNA-binding transcription factor activity
PAJ_RS12340	COG2204	response regulator
PAJ_RS12345	COG3964	amidohydrolase
PAJ_RS12350	COG0471	metal ion transport
PAJ_RS12355	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
PAJ_RS12360	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PAJ_RS12375	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PAJ_RS12390	COG0745	RESPONSE REGULATOR receiver
PAJ_RS12395	COG5002	protein histidine kinase activity
PAJ_RS12415	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PAJ_RS12420	COG1120	ATPase activity
PAJ_RS12445	COG0747	negative chemotaxis
PAJ_RS12450	COG0601	transmembrane transport
PAJ_RS12455	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PAJ_RS12460	COG0444	Belongs to the ABC transporter superfamily
PAJ_RS12470	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PAJ_RS12480	COG2040	homocysteine
PAJ_RS12485	COG0833	amino acid
PAJ_RS12495	COG4575	ribosome binding
PAJ_RS12500	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
PAJ_RS12505	COG1780	Probably involved in ribonucleotide reductase function
PAJ_RS12515	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PAJ_RS12525	COG4176	ABC-type proline glycine betaine transport system permease component
PAJ_RS12535	COG2814	Major facilitator Superfamily
PAJ_RS12540	COG1846	Transcriptional regulator
PAJ_RS12545	COG1566	PFAM secretion protein HlyD family protein
PAJ_RS12555	COG1064	alcohol dehydrogenase
PAJ_RS12560	COG1733	regulation of RNA biosynthetic process
PAJ_RS12565	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PAJ_RS12570	COG3118	belongs to the thioredoxin family
PAJ_RS12575	COG3148	PFAM DTW domain containing protein
PAJ_RS12580	COG0045	succinate-CoA ligase (ADP-forming) activity
PAJ_RS12580	COG1042	CoA-binding domain protein
PAJ_RS12580	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PAJ_RS12585	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAJ_RS12590	COG0477	Major facilitator Superfamily
PAJ_RS12630	COG0542	response to heat
PAJ_RS12640	COG0564	pseudouridine synthase activity
PAJ_RS12645	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PAJ_RS12650	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
PAJ_RS12655	COG1605	Chorismate mutase
PAJ_RS12655	COG0077	Prephenate dehydratase
PAJ_RS12660	COG1605	Chorismate mutase
PAJ_RS12660	COG0287	Prephenate dehydrogenase
PAJ_RS12665	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PAJ_RS12695	COG0228	four-way junction DNA binding
PAJ_RS12700	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PAJ_RS12705	COG4137	Cytochrome C assembly protein
PAJ_RS12710	COG4536	flavin adenine dinucleotide binding
PAJ_RS12715	COG1854	S-ribosylhomocysteine lyase activity
PAJ_RS12720	COG2918	glutathione biosynthetic process
PAJ_RS12725	COG1238	metal cluster binding
PAJ_RS12730	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PAJ_RS12760	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
PAJ_RS12775	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PAJ_RS12790	COG2824	Alkylphosphonate utilization operon protein PhnA
PAJ_RS12795	COG2951	lytic endotransglycosylase activity
PAJ_RS12800	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PAJ_RS12815	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PAJ_RS12820	COG1388	LysM domain
PAJ_RS12820	COG4942	peptidase
PAJ_RS12825	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
PAJ_RS12830	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
PAJ_RS12835	COG0585	pseudouridine synthase activity
PAJ_RS12850	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
PAJ_RS12865	COG2895	sulfate adenylyltransferase (ATP) activity
PAJ_RS12875	COG1648	precorrin-2 dehydrogenase activity
PAJ_RS12875	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
PAJ_RS12880	COG2234	aminopeptidase activity
PAJ_RS12900	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PAJ_RS12905	COG0765	amino acid transport
PAJ_RS12910	COG0765	amino acid transport
PAJ_RS12930	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
PAJ_RS12935	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
PAJ_RS12945	COG0720	synthase
PAJ_RS12950	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
PAJ_RS12955	COG0602	queuosine metabolic process
PAJ_RS12960	COG3366	ferrous iron transmembrane transporter activity
PAJ_RS12975	COG0148	phosphopyruvate hydratase activity
PAJ_RS12980	COG0504	CTP synthase activity
PAJ_RS12985	COG3956	TIGRFAM MazG family protein
PAJ_RS12990	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PAJ_RS12995	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PAJ_RS13005	COG1929	Belongs to the glycerate kinase type-1 family
PAJ_RS13010	COG2084	Dehydrogenase
PAJ_RS13015	COG3836	Belongs to the HpcH HpaI aldolase family
PAJ_RS13020	COG4948	Mandelate Racemase Muconate Lactonizing
PAJ_RS13030	COG2271	Major facilitator Superfamily
PAJ_RS13035	COG2721	sulfolactate sulfo-lyase activity
PAJ_RS13040	COG0716	FMN binding
PAJ_RS13045	COG0564	pseudouridine synthase activity
PAJ_RS13050	COG3098	single-species biofilm formation
PAJ_RS13060	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
PAJ_RS13060	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
PAJ_RS13065	COG1611	Belongs to the LOG family
PAJ_RS13075	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
PAJ_RS13080	COG2363	Small membrane protein
PAJ_RS13085	COG0583	DNA-binding transcription factor activity
PAJ_RS13095	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PAJ_RS13100	COG2166	iron-sulfur cluster assembly
PAJ_RS13105	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
PAJ_RS13110	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
PAJ_RS13140	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
PAJ_RS13140	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
PAJ_RS13145	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
PAJ_RS13150	COG1074	ATP-dependent DNA helicase activity
PAJ_RS13160	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
PAJ_RS13175	COG4795	General secretion pathway protein
PAJ_RS13180	COG2165	general secretion pathway protein
PAJ_RS13185	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
PAJ_RS13190	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PAJ_RS13200	COG1051	belongs to the nudix hydrolase family
PAJ_RS13205	COG3066	DNA modification
PAJ_RS13210	COG0861	Integral membrane protein TerC family
PAJ_RS13220	COG0667	Aldo Keto reductase
PAJ_RS13230	COG0583	DNA-binding transcription factor activity
PAJ_RS13235	COG2814	Major facilitator Superfamily
PAJ_RS13250	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
PAJ_RS13255	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
PAJ_RS13260	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
PAJ_RS13265	COG4974	Belongs to the 'phage' integrase family
PAJ_RS13270	COG0716	FMN binding
PAJ_RS13280	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
PAJ_RS13285	COG0354	folic acid binding
PAJ_RS13290	COG1272	protein, Hemolysin III
PAJ_RS13295	COG1737	Transcriptional regulator
PAJ_RS13300	COG2723	6-phospho-beta-galactosidase activity
PAJ_RS13305	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS13310	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PAJ_RS13310	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PAJ_RS13320	COG0404	The glycine cleavage system catalyzes the degradation of glycine
PAJ_RS13325	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PAJ_RS13330	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PAJ_RS13335	COG0006	proline dipeptidase activity
PAJ_RS13345	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
PAJ_RS13355	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PAJ_RS13360	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PAJ_RS13370	COG0583	DNA-binding transcription factor activity
PAJ_RS13385	COG0668	transmembrane transport
PAJ_RS13395	COG0191	fructose-bisphosphate aldolase activity
PAJ_RS13400	COG0126	phosphoglycerate kinase activity
PAJ_RS13410	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
PAJ_RS13415	COG0501	Belongs to the peptidase M48B family
PAJ_RS13435	COG2814	Major facilitator Superfamily
PAJ_RS13440	COG0840	transmembrane signaling receptor activity
PAJ_RS13450	COG2356	endonuclease I
PAJ_RS13455	COG1385	rRNA (uridine-N3-)-methyltransferase activity
PAJ_RS13465	COG1678	Uncharacterized ACR, COG1678
PAJ_RS13475	COG2805	Type II/IV secretion system protein
PAJ_RS13480	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
PAJ_RS13485	COG0762	integral membrane protein
PAJ_RS13490	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PAJ_RS13495	COG0635	Involved in the biosynthesis of porphyrin-containing compound
PAJ_RS13500	COG2188	Transcriptional regulator
PAJ_RS13505	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS13525	COG3171	Protein conserved in bacteria
PAJ_RS13535	COG2169	Transcriptional regulator
PAJ_RS13540	COG1486	melibiose metabolic process
PAJ_RS13545	COG2211	Major facilitator Superfamily
PAJ_RS13550	COG1194	a g-specific adenine glycosylase
PAJ_RS13560	COG0741	lytic transglycosylase activity
PAJ_RS13570	COG1982	Orn Lys Arg decarboxylase major
PAJ_RS13575	COG0604	alcohol dehydrogenase
PAJ_RS13585	COG1695	Transcriptional regulator
PAJ_RS13590	COG2375	cellular response to nickel ion
PAJ_RS13600	COG3708	Transcriptional regulator
PAJ_RS13600	COG2207	Transcriptional regulator
PAJ_RS13610	COG1271	oxidase subunit
PAJ_RS13615	COG1733	regulation of RNA biosynthetic process
PAJ_RS13620	COG0702	epimerase
PAJ_RS13650	COG3685	Protein conserved in bacteria
PAJ_RS13655	COG3685	Protein conserved in bacteria
PAJ_RS13660	COG3729	General stress protein
PAJ_RS13675	COG2203	Gaf domain
PAJ_RS13675	COG2199	diguanylate cyclase activity
PAJ_RS13690	COG0840	transmembrane signaling receptor activity
PAJ_RS13750	COG2814	Major facilitator Superfamily
PAJ_RS13760	COG0583	DNA-binding transcription factor activity
PAJ_RS13975	COG0367	asparagine synthase
PAJ_RS14020	COG0346	lactoylglutathione lyase activity
PAJ_RS14025	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
PAJ_RS14030	COG0588	phosphoglycerate mutase activity
PAJ_RS14035	COG0148	phosphopyruvate hydratase activity
PAJ_RS14045	COG1227	inorganic diphosphatase activity
PAJ_RS14080	COG0346	lactoylglutathione lyase activity
PAJ_RS14125	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
PAJ_RS14150	COG3706	GGDEF domain
PAJ_RS14165	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
PAJ_RS14170	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
PAJ_RS14180	COG0084	hydrolase, TatD family'
PAJ_RS14185	COG4667	esterase of the alpha-beta hydrolase superfamily
PAJ_RS14190	COG2823	Periplasmic or secreted lipoprotein
PAJ_RS14195	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PAJ_RS14205	COG1528	Iron-storage protein
PAJ_RS14215	COG2271	Major facilitator Superfamily
PAJ_RS14220	COG1609	Transcriptional regulator
PAJ_RS14225	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
PAJ_RS14240	COG3842	ATPase activity
PAJ_RS14255	COG4297	protein containing double-stranded beta helix domain
PAJ_RS14270	COG1126	abc transporter atp-binding protein
PAJ_RS14275	COG0765	amino acid transport
PAJ_RS14290	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PAJ_RS14300	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PAJ_RS14310	COG1473	amidohydrolase
PAJ_RS14320	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PAJ_RS14360	COG0848	biopolymer transport protein
PAJ_RS14370	COG1263	PTS System
PAJ_RS14370	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PAJ_RS14370	COG2190	(PTS) system
PAJ_RS14375	COG1609	Transcriptional regulator
PAJ_RS14395	COG3485	protocatechuate 3,4-dioxygenase
PAJ_RS14400	COG3485	protocatechuate 3,4-dioxygenase
PAJ_RS14405	COG0583	DNA-binding transcription factor activity
PAJ_RS14410	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
PAJ_RS14420	COG0183	Belongs to the thiolase family
PAJ_RS14425	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
PAJ_RS14430	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
PAJ_RS14435	COG1414	Transcriptional regulator
PAJ_RS14440	COG0626	cystathionine gamma-synthase activity
PAJ_RS14445	COG0586	Pfam SNARE associated Golgi protein
PAJ_RS14450	COG2207	Transcriptional regulator
PAJ_RS14455	COG0656	L-ascorbic acid biosynthetic process
PAJ_RS14465	COG2132	Multicopper oxidase
PAJ_RS14475	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PAJ_RS14480	COG3711	transcriptional antiterminator
PAJ_RS14485	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS14485	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
PAJ_RS14485	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
PAJ_RS14495	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
PAJ_RS14495	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
PAJ_RS14515	COG2249	NAD(P)H dehydrogenase (quinone) activity
PAJ_RS14520	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
PAJ_RS14525	COG0187	DNA topoisomerase II activity
PAJ_RS14530	COG3150	esterase
PAJ_RS14535	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
PAJ_RS14540	COG3151	Protein conserved in bacteria
PAJ_RS14545	COG0494	nUDIX hydrolase
PAJ_RS14550	COG1538	Outer membrane efflux protein
PAJ_RS14555	COG5463	Belongs to the UPF0441 family
PAJ_RS14560	COG0754	glutathionylspermidine amidase activity
PAJ_RS14565	COG3384	dioxygenase
PAJ_RS14570	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PAJ_RS14575	COG2960	long-chain fatty acid transporting porin activity
PAJ_RS14590	COG3025	triphosphatase activity
PAJ_RS14595	COG4991	sh3 domain protein
PAJ_RS14600	COG0617	tRNA 3'-terminal CCA addition
PAJ_RS14605	COG1968	undecaprenyl-diphosphatase activity
PAJ_RS14610	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PAJ_RS14625	COG0828	Belongs to the bacterial ribosomal protein bS21 family
PAJ_RS14630	COG0358	DNA primase activity
PAJ_RS14710	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
PAJ_RS14785	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
PAJ_RS14815	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PAJ_RS14815	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS14815	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS14820	COG3711	transcriptional antiterminator
PAJ_RS14825	COG0659	secondary active sulfate transmembrane transporter activity
PAJ_RS14830	COG0840	transmembrane signaling receptor activity
PAJ_RS14840	COG0840	transmembrane signaling receptor activity
PAJ_RS14880	COG5001	Diguanylate cyclase
PAJ_RS14880	COG3300	MHYT domain
PAJ_RS14890	COG0840	transmembrane signaling receptor activity
PAJ_RS14915	COG1181	Belongs to the D-alanine--D-alanine ligase family
PAJ_RS14920	COG2199	diguanylate cyclase activity
PAJ_RS14925	COG0659	secondary active sulfate transmembrane transporter activity
PAJ_RS14930	COG0288	reversible hydration of carbon dioxide
PAJ_RS14935	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
PAJ_RS14945	COG0446	pyridine nucleotide-disulphide oxidoreductase
PAJ_RS14945	COG1902	pentaerythritol trinitrate reductase activity
PAJ_RS14950	COG2813	Specifically methylates the guanine in position
PAJ_RS14955	COG1451	nucleotide metabolic process
PAJ_RS14960	COG0038	chloride channel
PAJ_RS14965	COG0673	inositol 2-dehydrogenase activity
PAJ_RS14975	COG2721	sulfolactate sulfo-lyase activity
PAJ_RS14990	COG2271	Major facilitator Superfamily
PAJ_RS15000	COG0586	Pfam SNARE associated Golgi protein
PAJ_RS15010	COG1422	Protein of unknown function (DUF1090)
PAJ_RS15015	COG4575	ribosome binding
PAJ_RS15020	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
PAJ_RS15030	COG2259	Doxx family
PAJ_RS15050	COG0435	Glutathione S-transferase
PAJ_RS15060	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
PAJ_RS15065	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
PAJ_RS15075	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PAJ_RS15080	COG3107	peptidoglycan biosynthetic process
PAJ_RS15085	COG0792	nuclease activity
PAJ_RS15095	COG2823	Periplasmic or secreted lipoprotein
PAJ_RS15100	COG1741	Belongs to the pirin family
PAJ_RS15105	COG0583	DNA-binding transcription factor activity
PAJ_RS15110	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS15125	COG3964	amidohydrolase
PAJ_RS15170	COG1501	Belongs to the glycosyl hydrolase 31 family
PAJ_RS15175	COG2017	converts alpha-aldose to the beta-anomer
PAJ_RS15185	COG3684	Belongs to the aldolase LacD family
PAJ_RS15195	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS15200	COG1349	DNA-binding transcription factor activity
PAJ_RS15205	COG3783	Cytochrome b(562)
PAJ_RS15210	COG0312	modulator of DNA gyrase
PAJ_RS15220	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
PAJ_RS15225	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
PAJ_RS15230	COG0840	transmembrane signaling receptor activity
PAJ_RS15240	COG2707	UPF0756 membrane protein
PAJ_RS15255	COG2105	PFAM AIG2 family protein
PAJ_RS15260	COG2911	Protein conserved in bacteria
PAJ_RS15265	COG0729	surface antigen
PAJ_RS15270	COG1253	flavin adenine dinucleotide binding
PAJ_RS15280	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
PAJ_RS15285	COG1218	3'(2'),5'-bisphosphate nucleotidase
PAJ_RS15295	COG0545	Peptidyl-prolyl cis-trans isomerase
PAJ_RS15300	COG3061	Opacity-associated protein A
PAJ_RS15310	COG0359	binds to the 23S rRNA
PAJ_RS15315	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PAJ_RS15320	COG2965	DNA replication, synthesis of RNA primer
PAJ_RS15325	COG0360	Binds together with S18 to 16S ribosomal RNA
PAJ_RS15330	COG1073	alpha beta
PAJ_RS15335	COG0840	transmembrane signaling receptor activity
PAJ_RS15340	COG3650	response to hydrogen peroxide
PAJ_RS15345	COG1960	acyl-CoA dehydrogenase activity
PAJ_RS15355	COG0557	exoribonuclease II activity
PAJ_RS15365	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PAJ_RS15370	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
PAJ_RS15375	COG0330	HflC and HflK could
PAJ_RS15380	COG0330	HflC and HflK could
PAJ_RS15385	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PAJ_RS15395	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PAJ_RS15400	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PAJ_RS15410	COG0802	atpase or kinase
PAJ_RS15415	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
PAJ_RS15415	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
PAJ_RS15420	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
PAJ_RS15440	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
PAJ_RS15450	COG0688	phosphatidylethanolamine metabolic process
PAJ_RS15455	COG1511	domain protein
PAJ_RS15455	COG3264	Mechanosensitive ion channel
PAJ_RS15460	COG0039	L-malate dehydrogenase activity
PAJ_RS15465	COG1438	arginine binding
PAJ_RS15490	COG2732	(Barnase) inhibitor
PAJ_RS15495	COG1012	belongs to the aldehyde dehydrogenase family
PAJ_RS15500	COG1289	transmembrane transporter activity
PAJ_RS15505	COG1566	PFAM secretion protein HlyD family protein
PAJ_RS15515	COG0583	DNA-binding transcription factor activity
PAJ_RS15520	COG0312	modulator of DNA gyrase
PAJ_RS15525	COG3164	Protein of unknown function
PAJ_RS15530	COG1530	ribonuclease E activity
PAJ_RS15540	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
PAJ_RS15545	COG1792	Involved in formation and maintenance of cell shape
PAJ_RS15550	COG1077	Cell shape determining protein MreB Mrl
PAJ_RS15555	COG2199	diguanylate cyclase activity
PAJ_RS15555	COG2200	EAL domain
PAJ_RS15560	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
PAJ_RS15570	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
PAJ_RS15575	COG0511	ligase activity, forming carbon-carbon bonds
PAJ_RS15580	COG0439	Biotin carboxylase
PAJ_RS15585	COG3924	membrane
PAJ_RS15590	COG4145	pantothenate transmembrane transporter activity
PAJ_RS15595	COG2264	protein methyltransferase activity
PAJ_RS15605	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
PAJ_RS15610	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PAJ_RS15615	COG4597	amino acid ABC transporter
PAJ_RS15620	COG0765	amino acid transport
PAJ_RS15625	COG1126	abc transporter atp-binding protein
PAJ_RS15660	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
PAJ_RS15675	COG0551	DNA topoisomerase type I activity
PAJ_RS15685	COG0758	DNA mediated transformation
PAJ_RS15695	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PAJ_RS15700	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PAJ_RS15700	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PAJ_RS15705	COG0569	domain protein
PAJ_RS15710	COG1970	mechanosensitive ion channel activity
PAJ_RS15715	COG3036	rescue of stalled ribosome
PAJ_RS15725	COG0203	ribosomal protein L17
PAJ_RS15740	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PAJ_RS15745	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PAJ_RS15750	COG0257	Belongs to the bacterial ribosomal protein bL36 family
PAJ_RS15755	COG0201	protein transport
PAJ_RS15760	COG0200	Binds to the 23S rRNA
PAJ_RS15765	COG1841	ribosomal large subunit assembly
PAJ_RS15770	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PAJ_RS15775	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
PAJ_RS15790	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PAJ_RS15805	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PAJ_RS15820	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PAJ_RS15835	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PAJ_RS15840	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PAJ_RS15850	COG0088	Forms part of the polypeptide exit tunnel
PAJ_RS15860	COG0051	transcription antitermination factor activity, RNA binding
PAJ_RS15885	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PAJ_RS15890	COG0049	tRNA binding
PAJ_RS15895	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PAJ_RS15905	COG2923	Belongs to the DsrF TusC family
PAJ_RS15915	COG2964	Protein conserved in bacteria
PAJ_RS15920	COG0545	Peptidyl-prolyl cis-trans isomerase
PAJ_RS15925	COG2900	Belongs to the SlyX family
PAJ_RS15930	COG1047	Peptidyl-prolyl cis-trans
PAJ_RS15935	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
PAJ_RS15940	COG0475	glutathione-regulated potassium exporter activity
PAJ_RS15940	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
PAJ_RS15945	COG2249	NAD(P)H dehydrogenase (quinone) activity
PAJ_RS15950	COG0488	(ABC) transporter
PAJ_RS15955	COG2175	clavaminate synthase activity
PAJ_RS15960	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PAJ_RS15965	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
PAJ_RS15970	COG4521	taurine ABC transporter
PAJ_RS15975	COG1609	Transcriptional regulator
PAJ_RS15985	COG0429	hydrolase of the alpha beta-hydrolase fold
PAJ_RS15995	COG3954	Phosphoribulokinase
PAJ_RS16000	COG1765	OsmC-like protein
PAJ_RS16010	COG1289	transmembrane transporter activity
PAJ_RS16035	COG0738	Major facilitator superfamily
PAJ_RS16040	COG0402	S-adenosylhomocysteine deaminase activity
PAJ_RS16050	COG0546	phosphoglycolate phosphatase activity
PAJ_RS16055	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
PAJ_RS16065	COG3266	domain, Protein
PAJ_RS16070	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
PAJ_RS16075	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PAJ_RS16080	COG4796	Type ii and iii secretion system protein
PAJ_RS16105	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
PAJ_RS16110	COG0494	nUDIX hydrolase
PAJ_RS16120	COG1011	Hydrolase
PAJ_RS16125	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
PAJ_RS16130	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
PAJ_RS16135	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
PAJ_RS16155	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
PAJ_RS16160	COG2183	response to ionizing radiation
PAJ_RS16165	COG0366	Alpha amylase catalytic
PAJ_RS16180	COG1040	competence protein
PAJ_RS16185	COG0316	Belongs to the HesB IscA family
PAJ_RS16185	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
PAJ_RS16190	COG1640	4-alpha-glucanotransferase
PAJ_RS16195	COG0058	SHG alpha-glucan phosphorylase activity
PAJ_RS16200	COG1349	DNA-binding transcription factor activity
PAJ_RS16210	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PAJ_RS16215	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
PAJ_RS16225	COG0058	SHG alpha-glucan phosphorylase activity
PAJ_RS16230	COG0297	glycogen (starch) synthase activity
PAJ_RS16240	COG1523	belongs to the glycosyl hydrolase 13 family
PAJ_RS16250	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PAJ_RS16255	COG2095	MarC family integral membrane protein
PAJ_RS16260	COG2610	gluconate transmembrane transporter activity
PAJ_RS16265	COG3265	gluconokinase activity
PAJ_RS16270	COG1609	Transcriptional regulator
PAJ_RS16275	COG1741	Belongs to the pirin family
PAJ_RS16280	COG1247	-acetyltransferase
PAJ_RS16285	COG0405	Gamma-glutamyltransferase
PAJ_RS16295	COG0584	glycerophosphoryl diester phosphodiesterase
PAJ_RS16315	COG1653	transport
PAJ_RS16340	COG0683	leucine binding
PAJ_RS16355	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PAJ_RS16360	COG2177	Part of the ABC transporter FtsEX involved in
PAJ_RS16365	COG2884	Cell division ATP-binding protein ftsE
PAJ_RS16370	COG0552	protein localization to endoplasmic reticulum
PAJ_RS16370	COG0552	protein localization to endoplasmic reticulum
PAJ_RS16375	COG0742	ribosomal rna small subunit methyltransferase
PAJ_RS16380	COG3776	membrane
PAJ_RS16390	COG3714	YhhN family
PAJ_RS16405	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
PAJ_RS16415	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS16420	COG3962	Belongs to the TPP enzyme family
PAJ_RS16425	COG0673	inositol 2-dehydrogenase activity
PAJ_RS16430	COG1082	Xylose isomerase domain protein TIM barrel
PAJ_RS16440	COG3718	enzyme involved in inositol metabolism
PAJ_RS16450	COG2233	PERMEase
PAJ_RS16455	COG0628	permease
PAJ_RS16460	COG2186	Transcriptional regulator
PAJ_RS16465	COG1312	Catalyzes the dehydration of D-mannonate
PAJ_RS16470	COG2200	EAL domain
PAJ_RS16485	COG0113	porphobilinogen synthase activity
PAJ_RS16495	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
PAJ_RS16500	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS16520	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
PAJ_RS16525	COG0747	negative chemotaxis
PAJ_RS16530	COG0601	transmembrane transport
PAJ_RS16535	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PAJ_RS16540	COG0444	Belongs to the ABC transporter superfamily
PAJ_RS16545	COG4608	Belongs to the ABC transporter superfamily
PAJ_RS16555	COG2081	HI0933 family
PAJ_RS16560	COG0306	phosphate transporter
PAJ_RS16575	COG0742	ribosomal rna small subunit methyltransferase
PAJ_RS16585	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
PAJ_RS16595	COG1234	tRNA 3'-trailer cleavage
PAJ_RS16600	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PAJ_RS16605	COG1940	carbohydrate kinase activity
PAJ_RS16610	COG0483	inositol monophosphate 1-phosphatase activity
PAJ_RS16615	COG3842	ATPase activity
PAJ_RS16635	COG0584	glycerophosphoryl diester phosphodiesterase
PAJ_RS16660	COG2814	Major facilitator Superfamily
PAJ_RS16665	COG0583	DNA-binding transcription factor activity
PAJ_RS16670	COG2862	Uncharacterized protein family, UPF0114
PAJ_RS16680	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
PAJ_RS16685	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
PAJ_RS16690	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
PAJ_RS16710	COG1132	(ABC) transporter
PAJ_RS16720	COG0400	carboxylic ester hydrolase activity
PAJ_RS16725	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
PAJ_RS16740	COG1063	alcohol dehydrogenase
PAJ_RS16745	COG1802	Transcriptional regulator
PAJ_RS16750	COG2271	Major facilitator Superfamily
PAJ_RS16765	COG0179	Fumarylacetoacetate (FAA) hydrolase
PAJ_RS16770	COG1971	Probably functions as a manganese efflux pump
PAJ_RS16790	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PAJ_RS16795	COG0625	glutathione transferase activity
PAJ_RS16805	COG0300	oxidoreductase activity
PAJ_RS16810	COG0583	DNA-binding transcription factor activity
PAJ_RS16815	COG1295	ribonuclease BN
PAJ_RS16820	COG0477	Major facilitator Superfamily
PAJ_RS16825	COG0583	DNA-binding transcription factor activity
PAJ_RS16830	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PAJ_RS16845	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS16850	COG1181	Belongs to the D-alanine--D-alanine ligase family
PAJ_RS16875	COG0129	dihydroxy-acid dehydratase activity
PAJ_RS16885	COG3978	acetolactate synthase activity
PAJ_RS16900	COG3085	chromosome segregation
PAJ_RS16905	COG0583	DNA-binding transcription factor activity
PAJ_RS16955	COG4206	TonB-dependent receptor
PAJ_RS16975	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PAJ_RS16985	COG0165	Argininosuccinate lyase
PAJ_RS16990	COG0137	argininosuccinate synthase activity
PAJ_RS17005	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PAJ_RS17010	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
PAJ_RS17015	COG0840	transmembrane signaling receptor activity
PAJ_RS17025	COG0527	aspartate kinase activity
PAJ_RS17025	COG0460	homoserine dehydrogenase
PAJ_RS17030	COG0626	cystathionine gamma-synthase activity
PAJ_RS17035	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
PAJ_RS17040	COG0254	rRNA binding
PAJ_RS17045	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
PAJ_RS17050	COG1609	Transcriptional regulator
PAJ_RS17055	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
PAJ_RS17060	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
PAJ_RS17070	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
PAJ_RS17075	COG3074	FtsZ-dependent cytokinesis
PAJ_RS17080	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
PAJ_RS17085	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
PAJ_RS17090	COG1494	fructose-1,6-bisphosphatase
PAJ_RS17095	COG2814	Major facilitator Superfamily
PAJ_RS17105	COG3152	Membrane
PAJ_RS17115	COG0149	triose-phosphate isomerase activity
PAJ_RS17130	COG0205	6-phosphofructokinase activity
PAJ_RS17140	COG3729	General stress protein
PAJ_RS17145	COG3678	ATP-independent chaperone mediated protein folding
PAJ_RS17150	COG0745	RESPONSE REGULATOR receiver
PAJ_RS17155	COG2205	protein histidine kinase activity
PAJ_RS17160	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
PAJ_RS17170	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
PAJ_RS17175	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
PAJ_RS17180	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
PAJ_RS17185	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PAJ_RS17190	COG4942	peptidase
PAJ_RS17195	COG2861	carbohydrate metabolic process
PAJ_RS17205	COG0156	8-amino-7-oxononanoate synthase activity
PAJ_RS17210	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PAJ_RS17215	COG0859	PFAM glycosyl transferase family 9
PAJ_RS17220	COG0859	PFAM glycosyl transferase family 9
PAJ_RS17230	COG3307	-O-antigen
PAJ_RS17235	COG1216	Glycosyl transferase, family 2
PAJ_RS17235	COG1442	glycosyl transferase family 8
PAJ_RS17245	COG0438	transferase activity, transferring glycosyl groups
PAJ_RS17255	COG1216	Glycosyl transferase, family 2
PAJ_RS17260	COG0859	PFAM glycosyl transferase family 9
PAJ_RS17270	COG1519	Transferase
PAJ_RS17285	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
PAJ_RS17300	COG2003	Belongs to the UPF0758 family
PAJ_RS17305	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
PAJ_RS17315	COG1309	transcriptional regulator
PAJ_RS17325	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
PAJ_RS17330	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
PAJ_RS17340	COG1561	YicC-like family, N-terminal region
PAJ_RS17360	COG2815	serine threonine protein kinase
PAJ_RS17360	COG0515	serine threonine protein kinase
PAJ_RS17370	COG1560	Kdo2-lipid A biosynthetic process
PAJ_RS17375	COG2244	polysaccharide biosynthetic process
PAJ_RS17380	COG2860	membrane
PAJ_RS17395	COG1758	RNA polymerase activity
PAJ_RS17400	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PAJ_RS17405	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PAJ_RS17410	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PAJ_RS17415	COG2233	PERMEase
PAJ_RS17420	COG2982	Protein involved in outer membrane biogenesis
PAJ_RS17425	COG0456	acetyltransferase
PAJ_RS17440	COG1011	Hydrolase
PAJ_RS17455	COG3852	Histidine kinase
PAJ_RS17470	COG3078	GTPase activator activity
PAJ_RS17480	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PAJ_RS17480	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PAJ_RS17485	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
PAJ_RS17490	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
PAJ_RS17495	COG3084	Protein conserved in bacteria
PAJ_RS17505	COG1763	Mo-molybdopterin cofactor biosynthetic process
PAJ_RS17530	COG0477	Major facilitator Superfamily
PAJ_RS17535	COG1609	Transcriptional regulator
PAJ_RS17540	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS17550	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS17555	COG1129	ABC transporter
PAJ_RS17565	COG3111	PFAM Bacterial OB fold (BOF) protein
PAJ_RS17575	COG0642	Histidine kinase
PAJ_RS17590	COG2425	protein containing a von Willebrand factor type A (vWA) domain
PAJ_RS17595	COG1262	PFAM Formylglycine-generating sulfatase enzyme
PAJ_RS17600	COG1522	sequence-specific DNA binding
PAJ_RS17605	COG0716	FMN binding
PAJ_RS17615	COG0357	Ribosomal RNA small subunit methyltransferase G
PAJ_RS17620	COG3312	ion transport
PAJ_RS17625	COG0356	it plays a direct role in the translocation of protons across the membrane
PAJ_RS17635	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
PAJ_RS17640	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PAJ_RS17645	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
PAJ_RS17650	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
PAJ_RS17655	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
PAJ_RS17665	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
PAJ_RS17670	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
PAJ_RS17680	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
PAJ_RS17685	COG0573	inorganic phosphate transmembrane transporter activity
PAJ_RS17690	COG0581	inorganic phosphate transmembrane transporter activity
PAJ_RS17695	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
PAJ_RS17700	COG0704	Plays a role in the regulation of phosphate uptake
PAJ_RS17705	COG2814	Major facilitator Superfamily
PAJ_RS17710	COG1070	Carbohydrate kinase
PAJ_RS17715	COG2115	Belongs to the xylose isomerase family
PAJ_RS17720	COG4213	ABC transporter substrate-binding protein
PAJ_RS17730	COG4214	carbohydrate transport
PAJ_RS17735	COG1609	Transcriptional regulator
PAJ_RS17735	COG2207	Transcriptional regulator
PAJ_RS17755	COG1129	ABC transporter
PAJ_RS17760	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS17765	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS17770	COG1737	Transcriptional regulator
PAJ_RS17805	COG0583	DNA-binding transcription factor activity
PAJ_RS17820	COG4580	involved in the transport of maltose and maltodextrins
PAJ_RS17825	COG1447	Phosphotransferase system cellobiose-specific component IIA
PAJ_RS17830	COG2723	6-phospho-beta-galactosidase activity
PAJ_RS17835	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
PAJ_RS17835	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
PAJ_RS17840	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
PAJ_RS17845	COG1609	Transcriptional regulator
PAJ_RS17850	COG1940	carbohydrate kinase activity
PAJ_RS17855	COG1484	DNA-dependent DNA replication
PAJ_RS17870	COG2818	Glycosylase
PAJ_RS17875	COG2885	chlorophyll binding
PAJ_RS17885	COG1609	Transcriptional regulator
PAJ_RS17895	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS17935	COG5645	(Lipo)protein
PAJ_RS17940	COG0823	Involved in the tonB-independent uptake of proteins
PAJ_RS17945	COG0561	phosphatase activity
PAJ_RS17950	COG0187	DNA topoisomerase II activity
PAJ_RS17955	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PAJ_RS17960	COG0592	DNA-directed DNA polymerase activity
PAJ_RS17965	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PAJ_RS17975	COG0594	ribonuclease P activity
PAJ_RS17980	COG0706	membrane insertase activity
PAJ_RS17985	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PAJ_RS17990	COG0778	Nitroreductase
PAJ_RS18000	COG2252	PERMEase
PAJ_RS18005	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PAJ_RS18010	COG3274	enterobacterial common antigen metabolic process
PAJ_RS18015	COG0752	glycyl-tRNA synthetase alpha subunit
PAJ_RS18020	COG0751	glycine-tRNA ligase activity
PAJ_RS18035	COG0625	glutathione transferase activity
PAJ_RS18055	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
PAJ_RS18060	COG2990	Protein conserved in bacteria
PAJ_RS18070	COG3722	fumarate hydratase activity
PAJ_RS18080	COG2213	PTS system mannitol-specific
PAJ_RS18080	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS18095	COG2944	sequence-specific DNA binding
PAJ_RS18100	COG0814	amino acid
PAJ_RS18115	COG1846	Transcriptional regulator
PAJ_RS18120	COG1764	response to oxidative stress
PAJ_RS18140	COG0747	negative chemotaxis
PAJ_RS18145	COG0601	transmembrane transport
PAJ_RS18150	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PAJ_RS18155	COG0444	Belongs to the ABC transporter superfamily
PAJ_RS18160	COG4608	Belongs to the ABC transporter superfamily
PAJ_RS18175	COG0455	bacterial-type flagellum organization
PAJ_RS18180	COG1215	transferase activity, transferring glycosyl groups
PAJ_RS18185	COG1215	transferase activity, transferring glycosyl groups
PAJ_RS18200	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
PAJ_RS18205	COG2200	EAL domain
PAJ_RS18205	COG2199	diguanylate cyclase activity
PAJ_RS18220	COG0612	Peptidase, M16
PAJ_RS18235	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS18240	COG2200	EAL domain
PAJ_RS18245	COG2982	Protein involved in outer membrane biogenesis
PAJ_RS18250	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PAJ_RS18260	COG0248	Ppx GppA phosphatase
PAJ_RS18265	COG0513	Belongs to the DEAD box helicase family
PAJ_RS18270	COG3118	belongs to the thioredoxin family
PAJ_RS18275	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
PAJ_RS18280	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PAJ_RS18285	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
PAJ_RS18290	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
PAJ_RS18295	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
PAJ_RS18300	COG1088	dTDP-glucose 4,6-dehydratase activity
PAJ_RS18305	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
PAJ_RS18310	COG0456	acetyltransferase
PAJ_RS18315	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
PAJ_RS18320	COG2244	polysaccharide biosynthetic process
PAJ_RS18335	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
PAJ_RS18370	COG2959	enzyme of heme biosynthesis
PAJ_RS18380	COG0181	hydroxymethylbilane synthase activity
PAJ_RS18390	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
PAJ_RS18405	COG1011	Hydrolase
PAJ_RS18410	COG0210	DNA helicase
PAJ_RS18420	COG3180	Ammonia monooxygenase
PAJ_RS18430	COG1733	regulation of RNA biosynthetic process
PAJ_RS18440	COG2050	protein possibly involved in aromatic compounds catabolism
PAJ_RS18455	COG1280	lysine exporter protein (LysE YggA)
PAJ_RS18460	COG1280	lysine exporter protein (LysE YggA)
PAJ_RS18465	COG2267	carboxylic ester hydrolase activity
PAJ_RS18470	COG0561	phosphatase activity
PAJ_RS18475	COG2271	Major facilitator Superfamily
PAJ_RS18485	COG4807	Protein conserved in bacteria
PAJ_RS18490	COG0583	DNA-binding transcription factor activity
PAJ_RS18495	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
PAJ_RS18500	COG0412	Dienelactone hydrolase
PAJ_RS18505	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
PAJ_RS18510	COG1322	Protein conserved in bacteria
PAJ_RS18515	COG2226	methyltransferase
PAJ_RS18525	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
PAJ_RS18535	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PAJ_RS18540	COG0805	protein transport
PAJ_RS18545	COG0084	hydrolase, TatD family'
PAJ_RS18555	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
PAJ_RS18560	COG0543	2 iron, 2 sulfur cluster binding
PAJ_RS18565	COG0183	Belongs to the thiolase family
PAJ_RS18575	COG0006	proline dipeptidase activity
PAJ_RS18580	COG1739	Uncharacterized protein family UPF0029
PAJ_RS18615	COG0812	UDP-N-acetylmuramate dehydrogenase activity
PAJ_RS18620	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
PAJ_RS18620	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
PAJ_RS18655	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
PAJ_RS18660	COG0250	Participates in transcription elongation, termination and antitermination
PAJ_RS18665	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PAJ_RS18670	COG0081	regulation of translation
PAJ_RS18675	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
PAJ_RS18680	COG0222	ribosome binding
PAJ_RS18685	COG0085	RNA polymerase activity
PAJ_RS18690	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PAJ_RS18695	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PAJ_RS18705	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
PAJ_RS18710	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
PAJ_RS18715	COG2816	NAD+ diphosphatase activity
PAJ_RS18720	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
PAJ_RS18750	COG0138	bifunctional purine biosynthesis protein purh
PAJ_RS18785	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
PAJ_RS18795	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
PAJ_RS18800	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
PAJ_RS18815	COG2186	Transcriptional regulator
PAJ_RS18840	COG0646	methionine synthase
PAJ_RS18840	COG1410	methionine synthase
PAJ_RS18845	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PAJ_RS18870	COG0527	aspartate kinase activity
PAJ_RS18890	COG3223	Belongs to the PsiE family
PAJ_RS18910	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
PAJ_RS18920	COG0534	Mate efflux family protein
PAJ_RS18930	COG0735	belongs to the Fur family
PAJ_RS18940	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PAJ_RS18960	COG1522	sequence-specific DNA binding
PAJ_RS18970	COG1448	Aminotransferase
PAJ_RS18980	COG2315	Protein conserved in bacteria
PAJ_RS18985	COG1064	alcohol dehydrogenase
PAJ_RS18995	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
PAJ_RS19000	COG0629	single-stranded DNA binding
PAJ_RS19040	COG2207	Transcriptional regulator
PAJ_RS19045	COG0789	Transcriptional regulator
PAJ_RS19055	COG2252	PERMEase
PAJ_RS19060	COG0025	NhaP-type Na H and K H
PAJ_RS19065	COG0583	DNA-binding transcription factor activity
PAJ_RS19075	COG1346	cytolysis
PAJ_RS19085	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
PAJ_RS19090	COG3162	membrane
PAJ_RS19100	COG1301	dicarboxylic acid transport
PAJ_RS19105	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
PAJ_RS19115	COG0840	transmembrane signaling receptor activity
PAJ_RS19120	COG2207	Transcriptional regulator
PAJ_RS19135	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
PAJ_RS19160	COG0840	transmembrane signaling receptor activity
PAJ_RS19170	COG3248	Nucleoside-binding outer membrane protein
PAJ_RS19175	COG0642	Histidine kinase
PAJ_RS19185	COG4977	sequence-specific DNA binding
PAJ_RS19195	COG2814	Major facilitator Superfamily
PAJ_RS19200	COG4993	Dehydrogenase
PAJ_RS19215	COG2971	BadF BadG BcrA BcrD
PAJ_RS19240	COG1175	transmembrane transport
PAJ_RS19245	COG0395	ABC-type sugar transport system, permease component
PAJ_RS19255	COG0473	3-isopropylmalate dehydrogenase activity
PAJ_RS19265	COG0840	transmembrane signaling receptor activity
PAJ_RS19275	COG0625	glutathione transferase activity
PAJ_RS19290	COG2223	nitrite transmembrane transporter activity
PAJ_RS19315	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
PAJ_RS19330	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PAJ_RS19330	COG3453	Protein conserved in bacteria
PAJ_RS19340	COG1252	NADH dehydrogenase
PAJ_RS19350	COG3479	Phenolic acid decarboxylase
PAJ_RS19400	COG0840	transmembrane signaling receptor activity
PAJ_RS19405	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
PAJ_RS19410	COG3477	response to acidic pH
PAJ_RS19415	COG0235	Class ii aldolase
PAJ_RS19420	COG3623	hexulose-6-phosphate isomerase
PAJ_RS19425	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
PAJ_RS19430	COG1070	Carbohydrate kinase
PAJ_RS19440	COG2731	YhcH YjgK YiaL family protein
PAJ_RS19465	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS19470	COG1129	ABC transporter
PAJ_RS19475	COG1414	Transcriptional regulator
PAJ_RS19500	COG0667	Aldo Keto reductase
PAJ_RS19505	COG3507	Belongs to the glycosyl hydrolase 43 family
PAJ_RS19505	COG3693	PFAM glycoside hydrolase, family 10
PAJ_RS19505	COG2382	esterase
PAJ_RS19520	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
PAJ_RS19535	COG1278	Cold shock
PAJ_RS19540	COG1918	ferrous iron import across plasma membrane
PAJ_RS19545	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
PAJ_RS19550	COG1216	Glycosyl transferase, family 2
PAJ_RS19560	COG1216	Glycosyl transferase, family 2
PAJ_RS19560	COG1442	glycosyl transferase family 8
PAJ_RS19590	COG1309	transcriptional regulator
PAJ_RS19600	COG1324	tolerance protein
PAJ_RS19605	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
PAJ_RS19615	COG3030	protein affecting phage T7 exclusion by the F plasmid
PAJ_RS19620	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PAJ_RS19635	COG1509	lysine 2,3-aminomutase activity
PAJ_RS19640	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PAJ_RS19650	COG5510	response to toxic substance
PAJ_RS19660	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
PAJ_RS19665	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PAJ_RS19670	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PAJ_RS19675	COG3105	Protein conserved in bacteria
PAJ_RS19680	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
PAJ_RS19685	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
PAJ_RS19690	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
PAJ_RS19695	COG0625	glutathione transferase activity
PAJ_RS19700	COG2969	positive regulation of protein catabolic process
PAJ_RS19705	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
PAJ_RS19710	COG0067	glutamate synthase
PAJ_RS19710	COG0069	glutamate synthase activity
PAJ_RS19710	COG0070	glutamate synthase
PAJ_RS19715	COG0784	Response regulator, receiver
PAJ_RS19715	COG2198	Histidine kinase
PAJ_RS19715	COG5002	protein histidine kinase activity
PAJ_RS19725	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
PAJ_RS19730	COG1660	Displays ATPase and GTPase activities
PAJ_RS19745	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
PAJ_RS19750	COG1137	ATPase activity
PAJ_RS19755	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
PAJ_RS19760	COG3117	lipopolysaccharide transmembrane transporter activity
PAJ_RS19765	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
PAJ_RS19770	COG0517	IMP dehydrogenase activity
PAJ_RS19770	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
PAJ_RS19775	COG0530	calcium, potassium:sodium antiporter activity
PAJ_RS19780	COG1127	ABC transporter
PAJ_RS19785	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
PAJ_RS19790	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
PAJ_RS19795	COG2854	intermembrane phospholipid transfer
PAJ_RS19800	COG3113	response to antibiotic
PAJ_RS19805	COG5007	Belongs to the BolA IbaG family
PAJ_RS19815	COG3423	Transcriptional regulator
PAJ_RS19820	COG0142	geranyltranstransferase activity
PAJ_RS19825	COG0261	This protein binds to 23S rRNA in the presence of protein L20
PAJ_RS19835	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PAJ_RS19845	COG2027	D-alanyl-D-alanine carboxypeptidase
PAJ_RS19855	COG1534	Rna-binding protein
PAJ_RS19860	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
PAJ_RS19870	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
PAJ_RS19875	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PAJ_RS19880	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
PAJ_RS19895	COG0779	Required for maturation of 30S ribosomal subunits
PAJ_RS19900	COG0195	Participates in both transcription termination and antitermination
PAJ_RS19910	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PAJ_RS19920	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PAJ_RS19925	COG1185	polyribonucleotide nucleotidyltransferase activity
PAJ_RS19935	COG0513	Belongs to the DEAD box helicase family
PAJ_RS19940	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PAJ_RS19945	COG0826	peptidase U32
PAJ_RS19950	COG0826	peptidase U32
PAJ_RS19955	COG3154	lipid carrier protein
PAJ_RS19960	COG3153	acetyltransferase
PAJ_RS19965	COG2827	Endonuclease containing a URI domain
PAJ_RS19975	COG0693	protein deglycase activity
PAJ_RS19980	COG0702	epimerase
PAJ_RS19995	COG3525	Glycosyl hydrolase, family 20, catalytic domain
PAJ_RS20005	COG1609	Transcriptional regulator
PAJ_RS20015	COG0768	penicillin binding
PAJ_RS20035	COG1538	Outer membrane efflux protein
PAJ_RS20040	COG0318	PFAM AMP-dependent synthetase and ligase
PAJ_RS20040	COG0204	Acyl-transferase
PAJ_RS20050	COG0840	transmembrane signaling receptor activity
PAJ_RS20060	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
PAJ_RS20070	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
PAJ_RS20075	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
PAJ_RS20085	COG0456	acetyltransferase
PAJ_RS20100	COG2927	DNA polymerase III (CHI subunit)
PAJ_RS20105	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
PAJ_RS20110	COG0795	lipopolysaccharide-transporting ATPase activity
PAJ_RS20115	COG0795	lipopolysaccharide-transporting ATPase activity
PAJ_RS20140	COG1172	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS20145	COG1129	ABC transporter
PAJ_RS20150	COG1609	Transcriptional regulator
PAJ_RS20170	COG2733	membrane
PAJ_RS20190	COG0433	COG0433 Predicted ATPase
PAJ_RS20235	COG1401	restriction endodeoxyribonuclease activity
PAJ_RS20240	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
PAJ_RS20260	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
PAJ_RS20325	COG1982	Orn Lys Arg decarboxylase major
PAJ_RS20330	COG0318	PFAM AMP-dependent synthetase and ligase
PAJ_RS20340	COG0583	DNA-binding transcription factor activity
PAJ_RS20350	COG0840	transmembrane signaling receptor activity
PAJ_RS20360	COG2271	Major facilitator Superfamily
PAJ_RS20375	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS20380	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PAJ_RS20385	COG2731	YhcH YjgK YiaL family protein
PAJ_RS20390	COG2271	Major facilitator Superfamily
PAJ_RS20420	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PAJ_RS20435	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
PAJ_RS20440	COG0463	Glycosyl transferase, family 2
PAJ_RS20475	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS20480	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PAJ_RS20495	COG2382	esterase
PAJ_RS20510	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAJ_RS20515	COG1830	Aldolase
PAJ_RS20520	COG1063	alcohol dehydrogenase
PAJ_RS20550	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
PAJ_RS20560	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
PAJ_RS20565	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS20570	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
PAJ_RS20590	COG1116	anion transmembrane transporter activity
PAJ_RS20600	COG4948	Mandelate Racemase Muconate Lactonizing
PAJ_RS20605	COG1028	Short-chain dehydrogenase reductase Sdr
PAJ_RS20610	COG1063	alcohol dehydrogenase
PAJ_RS20615	COG0477	Major facilitator Superfamily
PAJ_RS20625	COG3318	Belongs to the UPF0149 family
PAJ_RS20625	COG3012	SEC-C Motif Domain Protein
PAJ_RS20670	COG0477	Major facilitator Superfamily
PAJ_RS20675	COG1609	Transcriptional regulator
PAJ_RS20685	COG2814	Major facilitator Superfamily
PAJ_RS20690	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PAJ_RS20695	COG3706	GGDEF domain
PAJ_RS20725	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
PAJ_RS20735	COG1011	Hydrolase
PAJ_RS20740	COG3726	membrane protein affecting hemolysin expression
PAJ_RS20745	COG0560	Phosphoserine phosphatase
PAJ_RS20775	COG3121	Chaperone
PAJ_RS20790	COG3121	Chaperone
PAJ_RS20805	COG0488	(ABC) transporter
PAJ_RS20810	COG1349	DNA-binding transcription factor activity
PAJ_RS20815	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAJ_RS20820	COG0738	Major facilitator superfamily
PAJ_RS20830	COG0076	glutamate decarboxylase activity
PAJ_RS20835	COG3486	L-lysine 6-monooxygenase (NADPH) activity
PAJ_RS20850	COG4774	siderophore transport
PAJ_RS20870	COG0559	Belongs to the binding-protein-dependent transport system permease family
PAJ_RS20880	COG1802	Transcriptional regulator
PAJ_RS20885	COG0439	Biotin carboxylase
PAJ_RS20895	COG0741	lytic transglycosylase activity
PAJ_RS20900	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
PAJ_RS20905	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
PAJ_RS20910	COG0406	alpha-ribazole phosphatase activity
PAJ_RS20915	COG2207	Transcriptional regulator
PAJ_RS20915	COG3708	Transcriptional regulator
PAJ_RS20920	COG3045	CreA protein
PAJ_RS20925	COG0745	RESPONSE REGULATOR receiver
PAJ_RS20930	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
PAJ_RS21395	COG3023	N-Acetylmuramoyl-L-alanine amidase
PAJ_RS21585	COG1643	Atp-dependent helicase
PAJ_RS21590	COG1643	Atp-dependent helicase
PAJ_RS21815	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
PAJ_RS22270	COG3210	domain, Protein