PAJ_RS00030 SM00852 Probable molybdopterin binding domain PAJ_RS00050 SM00271 DnaJ molecular chaperone homology domain PAJ_RS00095 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain PAJ_RS00100 SM00851 MGS-like domain PAJ_RS00100 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PAJ_RS00145 SM00650 Ribosomal RNA adenine dimethylases PAJ_RS00165 SM00271 DnaJ molecular chaperone homology domain PAJ_RS00175 SM00487 DEAD-like helicases superfamily PAJ_RS00175 SM00490 helicase superfamily c-terminal domain PAJ_RS00180 SM00486 DNA polymerase type-B family PAJ_RS00190 SM00382 ATPases associated with a variety of cellular activities PAJ_RS00255 SM01329 PAJ_RS00255 PAJ_RS00260 SM00917 LeuA allosteric (dimerisation) domain PAJ_RS00275 SM00354 helix_turn _helix lactose operon repressor PAJ_RS00345 SM00842 Cell division protein FtsA PAJ_RS00350 SM00864 Tubulin/FtsZ family, GTPase domain PAJ_RS00350 SM00865 Tubulin/FtsZ family, C-terminal domain PAJ_RS00365 SM00957 SecA DEAD-like domain PAJ_RS00365 SM00958 SecA preprotein cross-linking domain PAJ_RS00390 SM01240 PAJ_RS00390 PAJ_RS00415 SM00644 PAJ_RS00415 PAJ_RS00440 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS00440 SM00895 PAJ_RS00440 PAJ_RS00490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS00490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS00535 SM00947 Carbonic anhydrase PAJ_RS00540 SM00382 ATPases associated with a variety of cellular activities PAJ_RS00595 SM00487 DEAD-like helicases superfamily PAJ_RS00595 SM00490 helicase superfamily c-terminal domain PAJ_RS00595 SM00847 Helicase associated domain (HA2) Add an annotation PAJ_RS00650 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. PAJ_RS00655 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. PAJ_RS00680 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. PAJ_RS00725 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. PAJ_RS00735 SM00935 Outer membrane protein (OmpH-like) PAJ_RS00765 SM00481 DNA polymerase alpha chain like domain PAJ_RS00785 SM00977 TilS substrate C-terminal domain PAJ_RS00835 SM00382 ATPases associated with a variety of cellular activities PAJ_RS00835 SM00930 PAJ_RS00835 PAJ_RS00900 SM00479 PAJ_RS00900 PAJ_RS00920 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS00920 SM00895 PAJ_RS00920 PAJ_RS00935 SM01007 Class II Aldolase and Adducin N-terminal domain PAJ_RS00940 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS00950 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01015 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS01030 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01070 SM01007 Class II Aldolase and Adducin N-terminal domain PAJ_RS01135 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01175 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase PAJ_RS01240 SM00091 PAS domain PAJ_RS01240 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01255 SM01120 PAJ_RS01255 PAJ_RS01270 SM00912 haemagglutination activity domain PAJ_RS01310 SM00357 Cold shock protein domain PAJ_RS01315 SM00260 Two component signalling adaptor domain PAJ_RS01315 SM00448 cheY-homologous receiver domain PAJ_RS01325 SM00487 DEAD-like helicases superfamily PAJ_RS01325 SM00490 helicase superfamily c-terminal domain PAJ_RS01355 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS01355 SM00895 PAJ_RS01355 PAJ_RS01360 SM01240 PAJ_RS01360 PAJ_RS01400 SM00354 helix_turn _helix lactose operon repressor PAJ_RS01500 SM00448 cheY-homologous receiver domain PAJ_RS01500 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS01505 SM00091 PAS domain PAJ_RS01505 SM00387 Histidine kinase-like ATPases PAJ_RS01505 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS01560 SM01323 PAJ_RS01560 PAJ_RS01615 SM00861 Transketolase, pyrimidine binding domain PAJ_RS01630 SM00981 PAJ_RS01630 PAJ_RS01650 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01660 SM00829 Enoylreductase PAJ_RS01720 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01720 SM00994 ClpX C4-type zinc finger PAJ_RS01720 SM01086 C-terminal, D2-small domain, of ClpB protein PAJ_RS01725 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01725 SM00464 Found in ATP-dependent protease La (LON) PAJ_RS01730 SM00411 bacterial (prokaryotic) histone like domain PAJ_RS01760 SM00344 helix_turn_helix ASNC type PAJ_RS01765 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01770 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01775 SM00938 Nitrogen regulatory protein P-II PAJ_RS01820 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01875 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01885 SM00493 PAJ_RS01885 PAJ_RS01890 SM00387 Histidine kinase-like ATPases PAJ_RS01950 SM00422 helix_turn_helix, mercury resistance PAJ_RS01960 SM00244 prohibitin homologues PAJ_RS01970 SM00822 PAJ_RS01970 PAJ_RS01980 SM00382 ATPases associated with a variety of cellular activities PAJ_RS01995 SM01001 AIR carboxylase PAJ_RS02015 SM00840 PAJ_RS02015 PAJ_RS02095 SM00912 haemagglutination activity domain PAJ_RS02230 SM00869 Autotransporter beta-domain PAJ_RS02315 SM00046 Diacylglycerol kinase catalytic domain (presumed) PAJ_RS02340 SM00014 Acid phosphatase homologues PAJ_RS02395 SM00357 Cold shock protein domain PAJ_RS02415 SM00729 Elongator protein 3, MiaB family, Radical SAM PAJ_RS02430 SM00936 Penicillin-binding protein 5, C-terminal domain PAJ_RS02485 SM00382 ATPases associated with a variety of cellular activities PAJ_RS02500 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS02510 SM00116 Domain in cystathionine beta-synthase and other proteins. PAJ_RS02510 SM01091 Transporter associated domain PAJ_RS02525 SM00729 Elongator protein 3, MiaB family, Radical SAM PAJ_RS02640 SM00448 cheY-homologous receiver domain PAJ_RS02640 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS02665 SM00796 Allophanate hydrolase subunit 1 PAJ_RS02670 SM00797 Allophanate hydrolase subunit 2 PAJ_RS02695 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain PAJ_RS02695 SM01232 PAJ_RS02695 PAJ_RS02730 SM00861 Transketolase, pyrimidine binding domain PAJ_RS02745 SM00881 CoA binding domain PAJ_RS02800 SM00028 Tetratricopeptide repeats PAJ_RS02835 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS02835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS02835 SM01358 PAJ_RS02835 PAJ_RS02840 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS02840 SM00478 endonuclease III PAJ_RS02840 SM01009 AlkA N-terminal domain PAJ_RS02865 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS02865 SM00387 Histidine kinase-like ATPases PAJ_RS02865 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS02865 SM00448 cheY-homologous receiver domain PAJ_RS02870 SM00421 helix_turn_helix, Lux Regulon PAJ_RS02870 SM00448 cheY-homologous receiver domain PAJ_RS02885 SM00855 Phosphoglycerate mutase family PAJ_RS02905 SM00382 ATPases associated with a variety of cellular activities PAJ_RS02925 SM00382 ATPases associated with a variety of cellular activities PAJ_RS02950 SM00729 Elongator protein 3, MiaB family, Radical SAM PAJ_RS02950 SM00876 Biotin and Thiamin Synthesis associated domain PAJ_RS02970 SM00382 ATPases associated with a variety of cellular activities PAJ_RS02975 SM00487 DEAD-like helicases superfamily PAJ_RS02975 SM00490 helicase superfamily c-terminal domain PAJ_RS02985 SM00729 Elongator protein 3, MiaB family, Radical SAM PAJ_RS02990 SM00852 Probable molybdopterin binding domain PAJ_RS03025 SM00155 Phospholipase D. Active site motifs. PAJ_RS03040 SM00487 DEAD-like helicases superfamily PAJ_RS03040 SM00490 helicase superfamily c-terminal domain PAJ_RS03105 SM01217 PAJ_RS03105 PAJ_RS03115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS03115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS03135 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03145 SM00422 helix_turn_helix, mercury resistance PAJ_RS03150 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS03160 SM00487 DEAD-like helicases superfamily PAJ_RS03160 SM00488 PAJ_RS03160 PAJ_RS03160 SM00491 PAJ_RS03160 PAJ_RS03175 SM00354 helix_turn _helix lactose operon repressor PAJ_RS03180 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PAJ_RS03200 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS03200 SM00866 PAJ_RS03200 PAJ_RS03225 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS03240 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03250 SM00903 Flavin reductase like domain PAJ_RS03265 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03275 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS03275 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. PAJ_RS03300 SM00529 Helix-turn-helix diphteria tox regulatory element PAJ_RS03325 SM00528 Domain in histone-like proteins of HNS family PAJ_RS03330 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03340 SM00852 Probable molybdopterin binding domain PAJ_RS03350 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03375 SM00729 Elongator protein 3, MiaB family, Radical SAM PAJ_RS03380 SM00947 Carbonic anhydrase PAJ_RS03395 SM00936 Penicillin-binding protein 5, C-terminal domain PAJ_RS03400 SM00014 Acid phosphatase homologues PAJ_RS03445 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03470 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS03470 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. PAJ_RS03485 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS03485 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. PAJ_RS03490 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03505 SM00644 PAJ_RS03505 PAJ_RS03530 SM00357 Cold shock protein domain PAJ_RS03540 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03540 SM01086 C-terminal, D2-small domain, of ClpB protein PAJ_RS03555 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03560 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03570 SM00344 helix_turn_helix ASNC type PAJ_RS03575 SM00843 PAJ_RS03575 PAJ_RS03585 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03635 SM00316 Ribosomal protein S1-like RNA-binding domain PAJ_RS03640 SM00411 bacterial (prokaryotic) histone like domain PAJ_RS03645 SM00849 Metallo-beta-lactamase superfamily PAJ_RS03650 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03710 SM00849 Metallo-beta-lactamase superfamily PAJ_RS03740 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03755 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS03790 SM00981 PAJ_RS03790 PAJ_RS03795 SM00382 ATPases associated with a variety of cellular activities PAJ_RS03860 SM00851 MGS-like domain PAJ_RS03870 SM00881 CoA binding domain PAJ_RS03875 SM00992 Hemimethylated DNA-binding protein YccV like PAJ_RS03880 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase PAJ_RS03960 SM00421 helix_turn_helix, Lux Regulon PAJ_RS03975 SM00421 helix_turn_helix, Lux Regulon PAJ_RS03975 SM00448 cheY-homologous receiver domain PAJ_RS03980 SM00278 Helix-hairpin-helix DNA-binding motif class 1 PAJ_RS03980 SM00465 GIY-YIG type nucleases (URI domain) PAJ_RS04035 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS04040 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS04075 SM00507 HNH nucleases PAJ_RS04110 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS04200 SM00232 JAB/MPN domain PAJ_RS04280 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS04285 SM00347 helix_turn_helix multiple antibiotic resistance protein PAJ_RS04310 SM00155 Phospholipase D. Active site motifs. PAJ_RS04360 SM00450 Rhodanese Homology Domain PAJ_RS04365 SM00867 YceI-like domain PAJ_RS04430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS04445 SM00858 PAJ_RS04445 PAJ_RS04490 SM00047 Lysozyme subfamily 2 PAJ_RS04505 SM00316 Ribosomal protein S1-like RNA-binding domain PAJ_RS04510 SM00363 S4 RNA-binding domain PAJ_RS04540 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. PAJ_RS04545 SM00822 PAJ_RS04545 PAJ_RS04555 SM00825 Beta-ketoacyl synthase PAJ_RS04590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS04635 SM00347 helix_turn_helix multiple antibiotic resistance protein PAJ_RS04645 SM00487 DEAD-like helicases superfamily PAJ_RS04645 SM00490 helicase superfamily c-terminal domain PAJ_RS04645 SM00982 PAJ_RS04645 PAJ_RS04645 SM01058 CarD-like/TRCF domain PAJ_RS04675 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. PAJ_RS04680 SM00387 Histidine kinase-like ATPases PAJ_RS04680 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS04685 SM00448 cheY-homologous receiver domain PAJ_RS04685 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS04715 SM01329 PAJ_RS04715 PAJ_RS04825 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS04825 SM00866 PAJ_RS04825 PAJ_RS04865 SM00849 Metallo-beta-lactamase superfamily PAJ_RS04890 SM00861 Transketolase, pyrimidine binding domain PAJ_RS04925 SM00481 DNA polymerase alpha chain like domain PAJ_RS04965 SM00835 Cupin PAJ_RS04990 SM01061 CAT RNA binding domain PAJ_RS05015 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor PAJ_RS05035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS05035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS05065 SM01130 PAJ_RS05065 PAJ_RS05075 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS05110 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS05190 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS05235 SM00052 Putative diguanylate phosphodiesterase PAJ_RS05250 SM00869 Autotransporter beta-domain PAJ_RS05275 SM00867 YceI-like domain PAJ_RS05290 SM00028 Tetratricopeptide repeats PAJ_RS05330 SM00507 HNH nucleases PAJ_RS05360 SM00347 helix_turn_helix multiple antibiotic resistance protein PAJ_RS05410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS05410 SM00897 FIST N domain PAJ_RS05410 SM01204 PAJ_RS05410 PAJ_RS05475 SM00267 diguanylate cyclase PAJ_RS05480 SM01400 PAJ_RS05480 PAJ_RS05500 SM00937 PAJ_RS05500 PAJ_RS05550 SM00331 Sigma factor PP2C-like phosphatases PAJ_RS05550 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain PAJ_RS05580 SM01012 PAJ_RS05580 PAJ_RS05595 SM00382 ATPases associated with a variety of cellular activities PAJ_RS05605 SM00926 Molybdopterin oxidoreductase Fe4S4 domain PAJ_RS05615 SM00420 helix_turn_helix, Deoxyribose operon repressor PAJ_RS05615 SM01134 PAJ_RS05615 PAJ_RS05635 SM00382 ATPases associated with a variety of cellular activities PAJ_RS05690 SM00465 GIY-YIG type nucleases (URI domain) PAJ_RS05700 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS05700 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS05760 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain PAJ_RS05785 SM00873 B3/4 domain PAJ_RS05785 SM00874 tRNA synthetase B5 domain PAJ_RS05785 SM00896 Ferredoxin-fold anticodon binding domain PAJ_RS05790 SM00411 bacterial (prokaryotic) histone like domain PAJ_RS05805 SM00382 ATPases associated with a variety of cellular activities PAJ_RS05870 SM00382 ATPases associated with a variety of cellular activities PAJ_RS05960 SM00479 PAJ_RS05960 PAJ_RS06010 SM00347 helix_turn_helix multiple antibiotic resistance protein PAJ_RS06030 SM00052 Putative diguanylate phosphodiesterase PAJ_RS06030 SM01034 Sensors of blue-light using FAD PAJ_RS06035 SM00822 PAJ_RS06035 PAJ_RS06040 SM00642 Alpha-amylase domain PAJ_RS06045 SM00642 Alpha-amylase domain PAJ_RS06050 SM00642 Alpha-amylase domain PAJ_RS06055 SM01060 PAJ_RS06055 PAJ_RS06155 SM00095 Transthyretin PAJ_RS06170 SM00363 S4 RNA-binding domain PAJ_RS06195 SM00478 endonuclease III PAJ_RS06195 SM00525 PAJ_RS06195 PAJ_RS06205 SM00900 PAJ_RS06205 PAJ_RS06245 SM00382 ATPases associated with a variety of cellular activities PAJ_RS06260 SM00267 diguanylate cyclase PAJ_RS06270 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS06290 SM00421 helix_turn_helix, Lux Regulon PAJ_RS06295 SM00421 helix_turn_helix, Lux Regulon PAJ_RS06300 SM00644 PAJ_RS06300 PAJ_RS06310 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS06335 SM00849 Metallo-beta-lactamase superfamily PAJ_RS06345 SM00344 helix_turn_helix ASNC type PAJ_RS06420 SM00382 ATPases associated with a variety of cellular activities PAJ_RS06430 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS06490 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS06525 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS06550 SM00917 LeuA allosteric (dimerisation) domain PAJ_RS06575 SM00729 Elongator protein 3, MiaB family, Radical SAM PAJ_RS06585 SM00867 YceI-like domain PAJ_RS06645 SM01060 PAJ_RS06645 PAJ_RS06665 SM00382 ATPases associated with a variety of cellular activities PAJ_RS06685 SM00829 Enoylreductase PAJ_RS06690 SM00014 Acid phosphatase homologues PAJ_RS06695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS06700 SM00448 cheY-homologous receiver domain PAJ_RS06700 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS06710 SM00382 ATPases associated with a variety of cellular activities PAJ_RS06715 SM01266 PAJ_RS06715 PAJ_RS06735 SM00822 PAJ_RS06735 PAJ_RS06770 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor PAJ_RS06785 SM01021 Bacteriorhodopsin-like protein PAJ_RS06820 SM00098 Alkaline phosphatase homologues PAJ_RS06850 SM00382 ATPases associated with a variety of cellular activities PAJ_RS06870 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS06885 SM00421 helix_turn_helix, Lux Regulon PAJ_RS06970 SM00382 ATPases associated with a variety of cellular activities PAJ_RS07005 SM00833 Cobalamin synthesis protein cobW C-terminal domain PAJ_RS07020 SM00822 PAJ_RS07020 PAJ_RS07040 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS07040 SM00895 PAJ_RS07040 PAJ_RS07065 SM01119 PAJ_RS07065 PAJ_RS07080 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. PAJ_RS07095 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS07115 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS07140 SM00421 helix_turn_helix, Lux Regulon PAJ_RS07180 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PAJ_RS07185 SM01092 CO dehydrogenase flavoprotein C-terminal domain PAJ_RS07235 SM00116 Domain in cystathionine beta-synthase and other proteins. PAJ_RS07235 SM00382 ATPases associated with a variety of cellular activities PAJ_RS07295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS07295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS07310 SM01150 PAJ_RS07310 PAJ_RS07325 SM00463 Small MutS-related domain PAJ_RS07330 SM00100 Cyclic nucleotide-monophosphate binding domain PAJ_RS07330 SM00419 helix_turn_helix, cAMP Regulatory protein PAJ_RS07345 SM01002 Alanine dehydrogenase/PNT, C-terminal domain PAJ_RS07345 SM01003 Alanine dehydrogenase/PNT, N-terminal domain PAJ_RS07365 SM00448 cheY-homologous receiver domain PAJ_RS07365 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS07370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS07370 SM00387 Histidine kinase-like ATPases PAJ_RS07370 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS07390 SM00382 ATPases associated with a variety of cellular activities PAJ_RS07390 SM00487 DEAD-like helicases superfamily PAJ_RS07390 SM00490 helicase superfamily c-terminal domain PAJ_RS07390 SM00847 Helicase associated domain (HA2) Add an annotation PAJ_RS07450 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PAJ_RS07460 SM00091 PAS domain PAJ_RS07460 SM00382 ATPases associated with a variety of cellular activities PAJ_RS07495 SM00382 ATPases associated with a variety of cellular activities PAJ_RS07520 SM00382 ATPases associated with a variety of cellular activities PAJ_RS07525 SM00382 ATPases associated with a variety of cellular activities PAJ_RS07555 SM00357 Cold shock protein domain PAJ_RS07555 SM00955 PAJ_RS07555 PAJ_RS07570 SM00052 Putative diguanylate phosphodiesterase PAJ_RS07570 SM00091 PAS domain PAJ_RS07570 SM00267 diguanylate cyclase PAJ_RS07580 SM01007 Class II Aldolase and Adducin N-terminal domain PAJ_RS07600 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family PAJ_RS07605 SM00028 Tetratricopeptide repeats PAJ_RS07615 SM00014 Acid phosphatase homologues PAJ_RS07640 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain PAJ_RS07640 SM00437 Bacterial DNA topoisomerase I DNA-binding domain PAJ_RS07640 SM00493 PAJ_RS07640 PAJ_RS07655 SM00822 PAJ_RS07655 PAJ_RS07670 SM00363 S4 RNA-binding domain PAJ_RS07690 SM00481 DNA polymerase alpha chain like domain PAJ_RS07725 SM00749 bacterial OsmY and nodulation domain PAJ_RS07770 SM00155 Phospholipase D. Active site motifs. PAJ_RS07780 SM00382 ATPases associated with a variety of cellular activities PAJ_RS07785 SM00382 ATPases associated with a variety of cellular activities PAJ_RS07825 SM00528 Domain in histone-like proteins of HNS family PAJ_RS07835 SM00984 UDP binding domain PAJ_RS07845 SM00448 cheY-homologous receiver domain PAJ_RS07900 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain PAJ_RS07900 SM00437 Bacterial DNA topoisomerase I DNA-binding domain PAJ_RS07900 SM00493 PAJ_RS07900 PAJ_RS07915 SM00870 PAJ_RS07915 PAJ_RS07935 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PAJ_RS07955 SM00763 PrkA AAA domain PAJ_RS07965 SM01091 Transporter associated domain PAJ_RS07985 SM01005 Alanine racemase, C-terminal domain PAJ_RS08000 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS08040 SM00341 Helicase and RNase D C-terminal PAJ_RS08040 SM00474 3'-5' exonuclease PAJ_RS08060 SM00487 DEAD-like helicases superfamily PAJ_RS08060 SM00491 PAJ_RS08060 PAJ_RS08090 SM00052 Putative diguanylate phosphodiesterase PAJ_RS08095 SM01091 Transporter associated domain PAJ_RS08125 SM00357 Cold shock protein domain PAJ_RS08145 SM00346 helix_turn_helix isocitrate lyase regulation PAJ_RS08160 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. PAJ_RS08160 SM00245 tail specific protease PAJ_RS08165 SM00945 ProQ/FINO family PAJ_RS08170 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. PAJ_RS08240 SM00822 PAJ_RS08240 PAJ_RS08255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS08275 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS08275 SM00866 PAJ_RS08275 PAJ_RS08280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS08305 SM00479 PAJ_RS08305 PAJ_RS08355 SM00257 Lysin motif PAJ_RS08365 SM00382 ATPases associated with a variety of cellular activities PAJ_RS08380 SM00278 Helix-hairpin-helix DNA-binding motif class 1 PAJ_RS08455 SM00836 DALR anticodon binding domain PAJ_RS08455 SM01016 Arginyl tRNA synthetase N terminal dom PAJ_RS08490 SM00448 cheY-homologous receiver domain PAJ_RS08495 SM00448 cheY-homologous receiver domain PAJ_RS08500 SM00138 Methyltransferase, chemotaxis proteins PAJ_RS08505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS08505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS08505 SM00319 Homologues of the ligand binding domain of Tar PAJ_RS08510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS08510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS08510 SM00319 Homologues of the ligand binding domain of Tar PAJ_RS08515 SM00260 Two component signalling adaptor domain PAJ_RS08520 SM00073 Histidine Phosphotransfer domain PAJ_RS08520 SM00260 Two component signalling adaptor domain PAJ_RS08520 SM00387 Histidine kinase-like ATPases PAJ_RS08520 SM01231 PAJ_RS08520 PAJ_RS08555 SM00448 cheY-homologous receiver domain PAJ_RS08555 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS08560 SM00387 Histidine kinase-like ATPases PAJ_RS08560 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS08595 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS08600 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS08600 SM00382 ATPases associated with a variety of cellular activities PAJ_RS08680 SM00382 ATPases associated with a variety of cellular activities PAJ_RS08690 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS08690 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. PAJ_RS08750 SM00861 Transketolase, pyrimidine binding domain PAJ_RS08835 SM00642 Alpha-amylase domain PAJ_RS08890 SM00382 ATPases associated with a variety of cellular activities PAJ_RS08940 SM00421 helix_turn_helix, Lux Regulon PAJ_RS08945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS08945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS08945 SM00319 Homologues of the ligand binding domain of Tar PAJ_RS09000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS09010 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. PAJ_RS09035 SM00966 SpoVT / AbrB like domain PAJ_RS09065 SM00382 ATPases associated with a variety of cellular activities PAJ_RS09215 SM00382 ATPases associated with a variety of cellular activities PAJ_RS09215 SM01086 C-terminal, D2-small domain, of ClpB protein PAJ_RS09245 SM00331 Sigma factor PP2C-like phosphatases PAJ_RS09245 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain PAJ_RS09335 SM00448 cheY-homologous receiver domain PAJ_RS09335 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS09365 SM00382 ATPases associated with a variety of cellular activities PAJ_RS09370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS09370 SM00387 Histidine kinase-like ATPases PAJ_RS09370 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS09370 SM00448 cheY-homologous receiver domain PAJ_RS09390 SM00382 ATPases associated with a variety of cellular activities PAJ_RS09395 SM00849 Metallo-beta-lactamase superfamily PAJ_RS09400 SM00072 Guanylate kinase homologues. PAJ_RS09410 SM00382 ATPases associated with a variety of cellular activities PAJ_RS09415 SM00382 ATPases associated with a variety of cellular activities PAJ_RS09455 SM00014 Acid phosphatase homologues PAJ_RS09460 SM00344 helix_turn_helix ASNC type PAJ_RS09490 SM00382 ATPases associated with a variety of cellular activities PAJ_RS09545 SM00382 ATPases associated with a variety of cellular activities PAJ_RS09560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS09570 SM00477 DNA/RNA non-specific endonuclease PAJ_RS09570 SM00892 DNA/RNA non-specific endonuclease PAJ_RS09590 SM00344 helix_turn_helix ASNC type PAJ_RS09625 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS09635 SM01007 Class II Aldolase and Adducin N-terminal domain PAJ_RS09650 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS09655 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS09700 SM00354 helix_turn _helix lactose operon repressor PAJ_RS09715 SM00936 Penicillin-binding protein 5, C-terminal domain PAJ_RS09720 SM00479 PAJ_RS09720 PAJ_RS09735 SM01007 Class II Aldolase and Adducin N-terminal domain PAJ_RS09750 SM00420 helix_turn_helix, Deoxyribose operon repressor PAJ_RS09750 SM01134 PAJ_RS09750 PAJ_RS09760 SM01230 PAJ_RS09760 PAJ_RS09830 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS09840 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS09850 SM01350 PAJ_RS09850 PAJ_RS09880 SM00382 ATPases associated with a variety of cellular activities PAJ_RS09955 SM00226 Low molecular weight phosphatase family PAJ_RS09970 SM00116 Domain in cystathionine beta-synthase and other proteins. PAJ_RS09970 SM01091 Transporter associated domain PAJ_RS09990 SM00014 Acid phosphatase homologues PAJ_RS09995 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) PAJ_RS09995 SM00091 PAS domain PAJ_RS09995 SM00267 diguanylate cyclase PAJ_RS10035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS10035 SM00387 Histidine kinase-like ATPases PAJ_RS10035 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS10040 SM00448 cheY-homologous receiver domain PAJ_RS10040 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS10050 SM00046 Diacylglycerol kinase catalytic domain (presumed) PAJ_RS10060 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS10060 SM00895 PAJ_RS10060 PAJ_RS10135 SM00919 Malic enzyme, NAD binding domain PAJ_RS10135 SM01274 PAJ_RS10135 PAJ_RS10150 SM00382 ATPases associated with a variety of cellular activities PAJ_RS10160 SM00354 helix_turn _helix lactose operon repressor PAJ_RS10185 SM00829 Enoylreductase PAJ_RS10195 SM00382 ATPases associated with a variety of cellular activities PAJ_RS10230 SM00518 AP endonuclease family 2 PAJ_RS10255 SM01130 PAJ_RS10255 PAJ_RS10260 SM00354 helix_turn _helix lactose operon repressor PAJ_RS10275 SM00841 Elongation factor P, C-terminal PAJ_RS10275 SM01185 PAJ_RS10275 PAJ_RS10285 SM00014 Acid phosphatase homologues PAJ_RS10295 SM00052 Putative diguanylate phosphodiesterase PAJ_RS10315 SM00382 ATPases associated with a variety of cellular activities PAJ_RS10330 SM00363 S4 RNA-binding domain PAJ_RS10335 SM00487 DEAD-like helicases superfamily PAJ_RS10335 SM00490 helicase superfamily c-terminal domain PAJ_RS10395 SM00382 ATPases associated with a variety of cellular activities PAJ_RS10430 SM00813 Alpha-L-arabinofuranosidase C-terminus PAJ_RS10450 SM00382 ATPases associated with a variety of cellular activities PAJ_RS10480 SM00382 ATPases associated with a variety of cellular activities PAJ_RS10490 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins PAJ_RS10505 SM00387 Histidine kinase-like ATPases PAJ_RS10510 SM00421 helix_turn_helix, Lux Regulon PAJ_RS10510 SM00448 cheY-homologous receiver domain PAJ_RS10515 SM00387 Histidine kinase-like ATPases PAJ_RS10515 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS10515 SM00448 cheY-homologous receiver domain PAJ_RS10520 SM00434 DNA Topoisomerase IV PAJ_RS10545 SM00852 Probable molybdopterin binding domain PAJ_RS10605 SM00926 Molybdopterin oxidoreductase Fe4S4 domain PAJ_RS10605 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PAJ_RS10610 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PAJ_RS10645 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. PAJ_RS10675 SM00382 ATPases associated with a variety of cellular activities PAJ_RS10680 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS10705 SM00829 Enoylreductase PAJ_RS10710 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS10750 SM00382 ATPases associated with a variety of cellular activities PAJ_RS10765 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS10810 SM00859 Semialdehyde dehydrogenase, NAD binding domain PAJ_RS10825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS10825 SM00387 Histidine kinase-like ATPases PAJ_RS10825 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS10830 SM00448 cheY-homologous receiver domain PAJ_RS10830 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS10855 SM00450 Rhodanese Homology Domain PAJ_RS10860 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS10865 SM00825 Beta-ketoacyl synthase PAJ_RS10905 SM00463 Small MutS-related domain PAJ_RS10910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS10910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS10910 SM01358 PAJ_RS10910 PAJ_RS10945 SM00028 Tetratricopeptide repeats PAJ_RS10985 SM00382 ATPases associated with a variety of cellular activities PAJ_RS11015 SM00382 ATPases associated with a variety of cellular activities PAJ_RS11110 SM00953 PAJ_RS11110 PAJ_RS11150 SM00346 helix_turn_helix isocitrate lyase regulation PAJ_RS11175 SM00387 Histidine kinase-like ATPases PAJ_RS11180 SM00448 cheY-homologous receiver domain PAJ_RS11180 SM00850 LytTr DNA-binding domain PAJ_RS11305 SM00278 Helix-hairpin-helix DNA-binding motif class 1 PAJ_RS11305 SM00292 breast cancer carboxy-terminal domain PAJ_RS11305 SM00532 Ligase N family PAJ_RS11310 SM00771 ZipA, C-terminal domain (FtsZ-binding) PAJ_RS11340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS11340 SM00387 Histidine kinase-like ATPases PAJ_RS11340 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS11345 SM00448 cheY-homologous receiver domain PAJ_RS11345 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS11355 SM00382 ATPases associated with a variety of cellular activities PAJ_RS11390 SM00646 PAJ_RS11390 PAJ_RS11400 SM00919 Malic enzyme, NAD binding domain PAJ_RS11400 SM01274 PAJ_RS11400 PAJ_RS11410 SM00861 Transketolase, pyrimidine binding domain PAJ_RS11425 SM00091 PAS domain PAJ_RS11425 SM00387 Histidine kinase-like ATPases PAJ_RS11430 SM00448 cheY-homologous receiver domain PAJ_RS11450 SM00420 helix_turn_helix, Deoxyribose operon repressor PAJ_RS11450 SM01134 PAJ_RS11450 PAJ_RS11460 SM00382 ATPases associated with a variety of cellular activities PAJ_RS11505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS11505 SM00387 Histidine kinase-like ATPases PAJ_RS11510 SM00421 helix_turn_helix, Lux Regulon PAJ_RS11510 SM00448 cheY-homologous receiver domain PAJ_RS11560 SM01130 PAJ_RS11560 PAJ_RS11590 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS11595 SM00267 diguanylate cyclase PAJ_RS11605 SM00382 ATPases associated with a variety of cellular activities PAJ_RS11625 SM00354 helix_turn _helix lactose operon repressor PAJ_RS11665 SM00382 ATPases associated with a variety of cellular activities PAJ_RS11700 SM00116 Domain in cystathionine beta-synthase and other proteins. PAJ_RS11700 SM00924 MgtE intracellular N domain PAJ_RS11815 SM00116 Domain in cystathionine beta-synthase and other proteins. PAJ_RS11815 SM01240 PAJ_RS11815 PAJ_RS11835 SM00564 beta-propeller repeat PAJ_RS11850 SM00564 beta-propeller repeat PAJ_RS11870 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS11885 SM00562 PAJ_RS11885 PAJ_RS11895 SM01359 PAJ_RS11895 PAJ_RS11895 SM01360 PAJ_RS11895 PAJ_RS11970 SM00938 Nitrogen regulatory protein P-II PAJ_RS11975 SM00382 ATPases associated with a variety of cellular activities PAJ_RS11975 SM00448 cheY-homologous receiver domain PAJ_RS11985 SM00387 Histidine kinase-like ATPases PAJ_RS11985 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS11990 SM01211 PAJ_RS11990 PAJ_RS11995 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS12040 SM00358 Double-stranded RNA binding motif PAJ_RS12040 SM00535 Ribonuclease III family PAJ_RS12085 SM00487 DEAD-like helicases superfamily PAJ_RS12085 SM00490 helicase superfamily c-terminal domain PAJ_RS12095 SM00986 Uracil DNA glycosylase superfamily PAJ_RS12095 SM00987 UreE urease accessory protein, C-terminal domain PAJ_RS12145 SM00953 PAJ_RS12145 PAJ_RS12265 SM00382 ATPases associated with a variety of cellular activities PAJ_RS12270 SM00346 helix_turn_helix isocitrate lyase regulation PAJ_RS12305 SM01061 CAT RNA binding domain PAJ_RS12315 SM00829 Enoylreductase PAJ_RS12325 SM00710 Parallel beta-helix repeats PAJ_RS12340 SM00382 ATPases associated with a variety of cellular activities PAJ_RS12390 SM00448 cheY-homologous receiver domain PAJ_RS12390 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS12395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS12395 SM00387 Histidine kinase-like ATPases PAJ_RS12395 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS12420 SM00382 ATPases associated with a variety of cellular activities PAJ_RS12435 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS12440 SM00831 Cation transporter/ATPase, N-terminus PAJ_RS12460 SM00382 ATPases associated with a variety of cellular activities PAJ_RS12465 SM00382 ATPases associated with a variety of cellular activities PAJ_RS12520 SM00382 ATPases associated with a variety of cellular activities PAJ_RS12540 SM00347 helix_turn_helix multiple antibiotic resistance protein PAJ_RS12555 SM00829 Enoylreductase PAJ_RS12565 SM00967 RNA 2'-O ribose methyltransferase substrate binding PAJ_RS12575 SM01144 PAJ_RS12575 PAJ_RS12580 SM00881 CoA binding domain PAJ_RS12585 SM00155 Phospholipase D. Active site motifs. PAJ_RS12595 SM00829 Enoylreductase PAJ_RS12600 SM00344 helix_turn_helix ASNC type PAJ_RS12630 SM00382 ATPases associated with a variety of cellular activities PAJ_RS12630 SM01086 C-terminal, D2-small domain, of ClpB protein PAJ_RS12640 SM00363 S4 RNA-binding domain PAJ_RS12655 SM00830 Chorismate mutase type II PAJ_RS12660 SM00830 Chorismate mutase type II PAJ_RS12700 SM00382 ATPases associated with a variety of cellular activities PAJ_RS12700 SM00962 SRP54-type protein, GTPase domain PAJ_RS12700 SM00963 SRP54-type protein, helical bundle domain PAJ_RS12710 SM01091 Transporter associated domain PAJ_RS12765 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain PAJ_RS12775 SM00382 ATPases associated with a variety of cellular activities PAJ_RS12800 SM00533 DNA-binding domain of DNA mismatch repair MUTS family PAJ_RS12800 SM00534 ATPase domain of DNA mismatch repair MUTS family PAJ_RS12805 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS12820 SM00257 Lysin motif PAJ_RS12890 SM00346 helix_turn_helix isocitrate lyase regulation PAJ_RS12900 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS12900 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. PAJ_RS12915 SM00382 ATPases associated with a variety of cellular activities PAJ_RS12920 SM01119 PAJ_RS12920 PAJ_RS12975 SM01192 PAJ_RS12975 PAJ_RS12975 SM01193 PAJ_RS12975 PAJ_RS12990 SM00954 Region found in RelA / SpoT proteins PAJ_RS13000 SM00073 Histidine Phosphotransfer domain PAJ_RS13000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS13000 SM00387 Histidine kinase-like ATPases PAJ_RS13000 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS13000 SM00448 cheY-homologous receiver domain PAJ_RS13020 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PAJ_RS13035 SM00858 PAJ_RS13035 PAJ_RS13070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs PAJ_RS13070 SM00475 5'-3' exonuclease PAJ_RS13110 SM00925 MltA specific insert domain PAJ_RS13145 SM00382 ATPases associated with a variety of cellular activities PAJ_RS13195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. PAJ_RS13205 SM00927 DNA mismatch repair enzyme MutH PAJ_RS13335 SM01011 Aminopeptidase P, N-terminal domain PAJ_RS13405 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PAJ_RS13410 SM00861 Transketolase, pyrimidine binding domain PAJ_RS13440 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS13445 SM00731 SprT homologues. PAJ_RS13470 SM00732 Likely ribonuclease with RNase H fold. PAJ_RS13495 SM00729 Elongator protein 3, MiaB family, Radical SAM PAJ_RS13500 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS13500 SM00866 PAJ_RS13500 PAJ_RS13535 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS13550 SM00478 endonuclease III PAJ_RS13550 SM00525 PAJ_RS13550 PAJ_RS13575 SM00829 Enoylreductase PAJ_RS13600 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS13635 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor PAJ_RS13675 SM00267 diguanylate cyclase PAJ_RS13690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS13700 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) PAJ_RS13700 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS13710 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) PAJ_RS13710 SM00091 PAS domain PAJ_RS13710 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS14030 SM00855 Phosphoglycerate mutase family PAJ_RS14035 SM01192 PAJ_RS14035 PAJ_RS14035 SM01193 PAJ_RS14035 PAJ_RS14045 SM01131 PAJ_RS14045 PAJ_RS14135 SM00331 Sigma factor PP2C-like phosphatases PAJ_RS14150 SM00267 diguanylate cyclase PAJ_RS14170 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain PAJ_RS14175 SM01133 PAJ_RS14175 PAJ_RS14190 SM00749 bacterial OsmY and nodulation domain PAJ_RS14220 SM00354 helix_turn _helix lactose operon repressor PAJ_RS14225 SM00849 Metallo-beta-lactamase superfamily PAJ_RS14240 SM00382 ATPases associated with a variety of cellular activities PAJ_RS14245 SM00563 Phosphate acyltransferases PAJ_RS14265 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS14270 SM00382 ATPases associated with a variety of cellular activities PAJ_RS14285 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS14320 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS14325 SM00052 Putative diguanylate phosphodiesterase PAJ_RS14325 SM00267 diguanylate cyclase PAJ_RS14330 SM00972 Spore Coat Protein U domain PAJ_RS14335 SM00972 Spore Coat Protein U domain PAJ_RS14350 SM00972 Spore Coat Protein U domain PAJ_RS14375 SM00354 helix_turn _helix lactose operon repressor PAJ_RS14415 SM00998 Adenylosuccinate lyase C-terminus PAJ_RS14425 SM00882 Coenzyme A transferase PAJ_RS14430 SM00882 Coenzyme A transferase PAJ_RS14435 SM00346 helix_turn_helix isocitrate lyase regulation PAJ_RS14450 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS14470 SM00563 Phosphate acyltransferases PAJ_RS14475 SM00434 DNA Topoisomerase IV PAJ_RS14510 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS14525 SM00387 Histidine kinase-like ATPases PAJ_RS14525 SM00433 TopoisomeraseII PAJ_RS14590 SM01118 PAJ_RS14590 PAJ_RS14595 SM00287 Bacterial SH3 domain homologues PAJ_RS14610 SM00905 Dihydroneopterin aldolase PAJ_RS14615 SM01207 PAJ_RS14615 PAJ_RS14630 SM00400 zinc finger PAJ_RS14630 SM00493 PAJ_RS14630 PAJ_RS14630 SM00766 DNA primase DnaG DnaB-binding PAJ_RS14710 SM00857 Resolvase, N terminal domain PAJ_RS14830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS14840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS14840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS14880 SM00052 Putative diguanylate phosphodiesterase PAJ_RS14880 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. PAJ_RS14880 SM00091 PAS domain PAJ_RS14880 SM00267 diguanylate cyclase PAJ_RS14890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS14890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS14895 SM00052 Putative diguanylate phosphodiesterase PAJ_RS14895 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. PAJ_RS14900 SM00267 diguanylate cyclase PAJ_RS14920 SM00267 diguanylate cyclase PAJ_RS14930 SM00947 Carbonic anhydrase PAJ_RS14975 SM00858 PAJ_RS14975 PAJ_RS14995 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS14995 SM00895 PAJ_RS14995 PAJ_RS15095 SM00749 bacterial OsmY and nodulation domain PAJ_RS15185 SM01133 PAJ_RS15185 PAJ_RS15200 SM00420 helix_turn_helix, Deoxyribose operon repressor PAJ_RS15200 SM01134 PAJ_RS15200 PAJ_RS15230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS15230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS15270 SM01091 Transporter associated domain PAJ_RS15335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS15335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS15355 SM00316 Ribosomal protein S1-like RNA-binding domain PAJ_RS15355 SM00357 Cold shock protein domain PAJ_RS15355 SM00955 PAJ_RS15355 PAJ_RS15365 SM00788 Adenylosuccinate synthetase PAJ_RS15375 SM00244 prohibitin homologues PAJ_RS15380 SM00244 prohibitin homologues PAJ_RS15400 SM00853 MutL C terminal dimerisation domain PAJ_RS15400 SM01340 PAJ_RS15400 PAJ_RS15405 SM00257 Lysin motif PAJ_RS15405 SM00646 PAJ_RS15405 PAJ_RS15440 SM00479 PAJ_RS15440 PAJ_RS15530 SM00316 Ribosomal protein S1-like RNA-binding domain PAJ_RS15555 SM00052 Putative diguanylate phosphodiesterase PAJ_RS15555 SM00267 diguanylate cyclase PAJ_RS15580 SM00878 Biotin carboxylase C-terminal domain PAJ_RS15610 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS15625 SM00382 ATPases associated with a variety of cellular activities PAJ_RS15730 SM00662 RNA polymerases D PAJ_RS15800 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. PAJ_RS15805 SM01374 PAJ_RS15805 PAJ_RS15825 SM00322 K homology RNA-binding domain PAJ_RS15840 SM01382 PAJ_RS15840 PAJ_RS15840 SM01383 PAJ_RS15840 PAJ_RS15860 SM01403 PAJ_RS15860 PAJ_RS15885 SM00838 Elongation factor G C-terminus PAJ_RS15885 SM00889 Elongation factor G, domain IV PAJ_RS15950 SM00382 ATPases associated with a variety of cellular activities PAJ_RS15965 SM00382 ATPases associated with a variety of cellular activities PAJ_RS15970 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS15975 SM00354 helix_turn _helix lactose operon repressor PAJ_RS16005 SM00100 Cyclic nucleotide-monophosphate binding domain PAJ_RS16005 SM00419 helix_turn_helix, cAMP Regulatory protein PAJ_RS16080 SM00965 Secretin and TonB N terminus short domain PAJ_RS16125 SM00363 S4 RNA-binding domain PAJ_RS16140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS16140 SM00387 Histidine kinase-like ATPases PAJ_RS16140 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS16145 SM00448 cheY-homologous receiver domain PAJ_RS16145 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS16160 SM00316 Ribosomal protein S1-like RNA-binding domain PAJ_RS16160 SM00732 Likely ribonuclease with RNase H fold. PAJ_RS16165 SM00642 Alpha-amylase domain PAJ_RS16200 SM00420 helix_turn_helix, Deoxyribose operon repressor PAJ_RS16200 SM01134 PAJ_RS16200 PAJ_RS16210 SM00450 Rhodanese Homology Domain PAJ_RS16240 SM00642 Alpha-amylase domain PAJ_RS16245 SM00642 Alpha-amylase domain PAJ_RS16250 SM00859 Semialdehyde dehydrogenase, NAD binding domain PAJ_RS16270 SM00354 helix_turn _helix lactose operon repressor PAJ_RS16300 SM00382 ATPases associated with a variety of cellular activities PAJ_RS16320 SM00382 ATPases associated with a variety of cellular activities PAJ_RS16325 SM00382 ATPases associated with a variety of cellular activities PAJ_RS16365 SM00382 ATPases associated with a variety of cellular activities PAJ_RS16370 SM00382 ATPases associated with a variety of cellular activities PAJ_RS16370 SM00962 SRP54-type protein, GTPase domain PAJ_RS16370 SM00963 SRP54-type protein, helical bundle domain PAJ_RS16460 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS16460 SM00895 PAJ_RS16460 PAJ_RS16470 SM00052 Putative diguanylate phosphodiesterase PAJ_RS16485 SM01004 Delta-aminolevulinic acid dehydratase PAJ_RS16490 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS16540 SM00382 ATPases associated with a variety of cellular activities PAJ_RS16545 SM00382 ATPases associated with a variety of cellular activities PAJ_RS16595 SM00849 Metallo-beta-lactamase superfamily PAJ_RS16615 SM00382 ATPases associated with a variety of cellular activities PAJ_RS16700 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. PAJ_RS16710 SM00382 ATPases associated with a variety of cellular activities PAJ_RS16740 SM00829 Enoylreductase PAJ_RS16745 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS16745 SM00895 PAJ_RS16745 PAJ_RS16790 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS16805 SM00822 PAJ_RS16805 PAJ_RS16830 SM00062 Bacterial periplasmic substrate-binding proteins PAJ_RS16895 SM00382 ATPases associated with a variety of cellular activities PAJ_RS17000 SM00859 Semialdehyde dehydrogenase, NAD binding domain PAJ_RS17015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS17015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS17045 SM00487 DEAD-like helicases superfamily PAJ_RS17045 SM00490 helicase superfamily c-terminal domain PAJ_RS17050 SM00354 helix_turn _helix lactose operon repressor PAJ_RS17065 SM00382 ATPases associated with a variety of cellular activities PAJ_RS17065 SM01086 C-terminal, D2-small domain, of ClpB protein PAJ_RS17150 SM00448 cheY-homologous receiver domain PAJ_RS17150 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS17155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS17155 SM00387 Histidine kinase-like ATPases PAJ_RS17155 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS17165 SM00971 Serine acetyltransferase, N-terminal PAJ_RS17185 SM00450 Rhodanese Homology Domain PAJ_RS17200 SM00829 Enoylreductase PAJ_RS17285 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain PAJ_RS17285 SM01232 PAJ_RS17285 PAJ_RS17350 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain PAJ_RS17355 SM00220 Serine/Threonine protein kinases, catalytic domain PAJ_RS17360 SM00220 Serine/Threonine protein kinases, catalytic domain PAJ_RS17385 SM00532 Ligase N family PAJ_RS17390 SM00072 Guanylate kinase homologues. PAJ_RS17395 SM01409 PAJ_RS17395 PAJ_RS17400 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. PAJ_RS17400 SM00954 Region found in RelA / SpoT proteins PAJ_RS17410 SM00487 DEAD-like helicases superfamily PAJ_RS17410 SM00490 helicase superfamily c-terminal domain PAJ_RS17450 SM01230 PAJ_RS17450 PAJ_RS17455 SM00091 PAS domain PAJ_RS17455 SM00387 Histidine kinase-like ATPases PAJ_RS17455 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS17460 SM00382 ATPases associated with a variety of cellular activities PAJ_RS17460 SM00448 cheY-homologous receiver domain PAJ_RS17465 SM00729 Elongator protein 3, MiaB family, Radical SAM PAJ_RS17480 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs PAJ_RS17480 SM00474 3'-5' exonuclease PAJ_RS17480 SM00475 5'-3' exonuclease PAJ_RS17480 SM00482 DNA polymerase A domain PAJ_RS17535 SM00354 helix_turn _helix lactose operon repressor PAJ_RS17555 SM00382 ATPases associated with a variety of cellular activities PAJ_RS17570 SM00448 cheY-homologous receiver domain PAJ_RS17570 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS17575 SM00387 Histidine kinase-like ATPases PAJ_RS17575 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS17585 SM00382 ATPases associated with a variety of cellular activities PAJ_RS17590 SM00327 von Willebrand factor (vWF) type A domain PAJ_RS17600 SM00344 helix_turn_helix ASNC type PAJ_RS17610 SM01228 PAJ_RS17610 PAJ_RS17655 SM00382 ATPases associated with a variety of cellular activities PAJ_RS17695 SM00382 ATPases associated with a variety of cellular activities PAJ_RS17725 SM00382 ATPases associated with a variety of cellular activities PAJ_RS17735 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS17755 SM00382 ATPases associated with a variety of cellular activities PAJ_RS17800 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) PAJ_RS17800 SM00091 PAS domain PAJ_RS17800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS17845 SM00354 helix_turn _helix lactose operon repressor PAJ_RS17880 SM00354 helix_turn _helix lactose operon repressor PAJ_RS17885 SM00354 helix_turn _helix lactose operon repressor PAJ_RS17950 SM00387 Histidine kinase-like ATPases PAJ_RS17950 SM00433 TopoisomeraseII PAJ_RS17960 SM00480 DNA polymerase III beta subunit PAJ_RS17965 SM00382 ATPases associated with a variety of cellular activities PAJ_RS17965 SM00760 Bacterial dnaA protein helix-turn-helix domain PAJ_RS18110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. PAJ_RS18115 SM00347 helix_turn_helix multiple antibiotic resistance protein PAJ_RS18155 SM00382 ATPases associated with a variety of cellular activities PAJ_RS18160 SM00382 ATPases associated with a variety of cellular activities PAJ_RS18190 SM00028 Tetratricopeptide repeats PAJ_RS18205 SM00052 Putative diguanylate phosphodiesterase PAJ_RS18205 SM00267 diguanylate cyclase PAJ_RS18240 SM00052 Putative diguanylate phosphodiesterase PAJ_RS18265 SM00487 DEAD-like helicases superfamily PAJ_RS18265 SM00490 helicase superfamily c-terminal domain PAJ_RS18275 SM00357 Cold shock protein domain PAJ_RS18275 SM00382 ATPases associated with a variety of cellular activities PAJ_RS18275 SM00959 Rho termination factor, N-terminal domain PAJ_RS18295 SM00984 UDP binding domain PAJ_RS18450 SM00341 Helicase and RNase D C-terminal PAJ_RS18450 SM00487 DEAD-like helicases superfamily PAJ_RS18450 SM00490 helicase superfamily c-terminal domain PAJ_RS18450 SM00956 PAJ_RS18450 PAJ_RS18550 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. PAJ_RS18660 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. PAJ_RS18660 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. PAJ_RS18665 SM00649 Ribosomal protein L11/L12 PAJ_RS18690 SM00663 RNA polymerase I subunit A N-terminus PAJ_RS18695 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS18735 SM00411 bacterial (prokaryotic) histone like domain PAJ_RS18745 SM01209 PAJ_RS18745 PAJ_RS18745 SM01210 PAJ_RS18745 PAJ_RS18750 SM00798 AICARFT/IMPCHase bienzyme PAJ_RS18750 SM00851 MGS-like domain PAJ_RS18815 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS18815 SM00895 PAJ_RS18815 PAJ_RS18835 SM00346 helix_turn_helix isocitrate lyase regulation PAJ_RS18840 SM01018 B12 binding domain PAJ_RS18905 SM00563 Phosphate acyltransferases PAJ_RS18950 SM00829 Enoylreductase PAJ_RS18955 SM00382 ATPases associated with a variety of cellular activities PAJ_RS18960 SM00344 helix_turn_helix ASNC type PAJ_RS18985 SM00829 Enoylreductase PAJ_RS19015 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS19040 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS19045 SM00422 helix_turn_helix, mercury resistance PAJ_RS19115 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) PAJ_RS19115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS19120 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS19160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS19160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS19175 SM00387 Histidine kinase-like ATPases PAJ_RS19175 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS19180 SM00448 cheY-homologous receiver domain PAJ_RS19180 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS19185 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS19200 SM00564 beta-propeller repeat PAJ_RS19225 SM00382 ATPases associated with a variety of cellular activities PAJ_RS19250 SM00710 Parallel beta-helix repeats PAJ_RS19255 SM01329 PAJ_RS19255 PAJ_RS19265 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS19285 SM01038 Beta galactosidase small chain PAJ_RS19305 SM00640 Glycosyl hydrolases family 32 PAJ_RS19310 SM00354 helix_turn _helix lactose operon repressor PAJ_RS19330 SM00849 Metallo-beta-lactamase superfamily PAJ_RS19380 SM01006 Siderophore biosynthesis protein domain PAJ_RS19400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS19400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS19415 SM01007 Class II Aldolase and Adducin N-terminal domain PAJ_RS19425 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family PAJ_RS19470 SM00382 ATPases associated with a variety of cellular activities PAJ_RS19475 SM00346 helix_turn_helix isocitrate lyase regulation PAJ_RS19505 SM00633 Glycosyl hydrolase family 10 PAJ_RS19510 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS19530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS19530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS19530 SM00319 Homologues of the ligand binding domain of Tar PAJ_RS19535 SM00357 Cold shock protein domain PAJ_RS19540 SM00899 PAJ_RS19540 PAJ_RS19620 SM00883 Chaperonin 10 Kd subunit PAJ_RS19640 SM00841 Elongation factor P, C-terminal PAJ_RS19640 SM01185 PAJ_RS19640 PAJ_RS19665 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. PAJ_RS19670 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. PAJ_RS19715 SM00073 Histidine Phosphotransfer domain PAJ_RS19715 SM00091 PAS domain PAJ_RS19715 SM00387 Histidine kinase-like ATPases PAJ_RS19715 SM00388 His Kinase A (phosphoacceptor) domain PAJ_RS19715 SM00448 cheY-homologous receiver domain PAJ_RS19750 SM00382 ATPases associated with a variety of cellular activities PAJ_RS19770 SM00116 Domain in cystathionine beta-synthase and other proteins. PAJ_RS19780 SM00382 ATPases associated with a variety of cellular activities PAJ_RS19855 SM01103 PAJ_RS19855 PAJ_RS19900 SM00316 Ribosomal protein S1-like RNA-binding domain PAJ_RS19900 SM00322 K homology RNA-binding domain PAJ_RS19920 SM01387 PAJ_RS19920 PAJ_RS19925 SM00316 Ribosomal protein S1-like RNA-binding domain PAJ_RS19925 SM00322 K homology RNA-binding domain PAJ_RS19930 SM00028 Tetratricopeptide repeats PAJ_RS19935 SM00487 DEAD-like helicases superfamily PAJ_RS19935 SM00490 helicase superfamily c-terminal domain PAJ_RS20005 SM00354 helix_turn _helix lactose operon repressor PAJ_RS20040 SM00563 Phosphate acyltransferases PAJ_RS20050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS20050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PAJ_RS20120 SM00326 Src homology 3 domains PAJ_RS20145 SM00382 ATPases associated with a variety of cellular activities PAJ_RS20150 SM00354 helix_turn _helix lactose operon repressor PAJ_RS20240 SM00487 DEAD-like helicases superfamily PAJ_RS20240 SM00490 helicase superfamily c-terminal domain PAJ_RS20270 SM00487 DEAD-like helicases superfamily PAJ_RS20350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). PAJ_RS20375 SM00420 helix_turn_helix, Deoxyribose operon repressor PAJ_RS20380 SM01130 PAJ_RS20380 PAJ_RS20410 SM00563 Phosphate acyltransferases PAJ_RS20465 SM00825 Beta-ketoacyl synthase PAJ_RS20480 SM00825 Beta-ketoacyl synthase PAJ_RS20505 SM00052 Putative diguanylate phosphodiesterase PAJ_RS20515 SM01133 PAJ_RS20515 PAJ_RS20520 SM00829 Enoylreductase PAJ_RS20535 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS20590 SM00382 ATPases associated with a variety of cellular activities PAJ_RS20600 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PAJ_RS20620 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS20620 SM00895 PAJ_RS20620 PAJ_RS20675 SM00354 helix_turn _helix lactose operon repressor PAJ_RS20695 SM00267 diguanylate cyclase PAJ_RS20750 SM00382 ATPases associated with a variety of cellular activities PAJ_RS20755 SM00530 Helix-turn-helix XRE-family like proteins PAJ_RS20760 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS20795 SM00829 Enoylreductase PAJ_RS20805 SM00382 ATPases associated with a variety of cellular activities PAJ_RS20810 SM00420 helix_turn_helix, Deoxyribose operon repressor PAJ_RS20810 SM01134 PAJ_RS20810 PAJ_RS20840 SM01006 Siderophore biosynthesis protein domain PAJ_RS20855 SM00382 ATPases associated with a variety of cellular activities PAJ_RS20880 SM00345 helix_turn_helix gluconate operon transcriptional repressor PAJ_RS20880 SM00895 PAJ_RS20880 PAJ_RS20885 SM00796 Allophanate hydrolase subunit 1 PAJ_RS20885 SM00797 Allophanate hydrolase subunit 2 PAJ_RS20885 SM00878 Biotin carboxylase C-terminal domain PAJ_RS20910 SM00855 Phosphoglycerate mutase family PAJ_RS20915 SM00342 helix_turn_helix, arabinose operon control protein PAJ_RS20915 SM00871 Bacterial transcription activator, effector binding domain PAJ_RS20925 SM00448 cheY-homologous receiver domain PAJ_RS20925 SM00862 Transcriptional regulatory protein, C terminal PAJ_RS21395 SM00644 PAJ_RS21395 PAJ_RS21590 SM00847 Helicase associated domain (HA2) Add an annotation