PAJ_RS11175 9ad7e7d89a7cd3cf56e1ef1000d74c64 556 SMART SM00387 446 548 4.6E-7 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11175 9ad7e7d89a7cd3cf56e1ef1000d74c64 556 PANTHER PTHR34220 1 552 8.9E-240 T 14-09-2016 PAJ_RS11175 9ad7e7d89a7cd3cf56e1ef1000d74c64 556 Gene3D G3DSA:3.30.450.40 267 351 2.7E-5 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS11175 9ad7e7d89a7cd3cf56e1ef1000d74c64 556 SUPERFAMILY SSF55874 408 544 7.99E-17 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11175 9ad7e7d89a7cd3cf56e1ef1000d74c64 556 Pfam PF06580 Histidine kinase 353 432 4.2E-25 T 14-09-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 PAJ_RS11175 9ad7e7d89a7cd3cf56e1ef1000d74c64 556 Gene3D G3DSA:3.30.565.10 406 544 3.4E-15 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11175 9ad7e7d89a7cd3cf56e1ef1000d74c64 556 Pfam PF07694 5TMR of 5TMR-LYT 23 184 7.0E-43 T 14-09-2016 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 PAJ_RS11175 9ad7e7d89a7cd3cf56e1ef1000d74c64 556 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 450 544 5.6E-6 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11175 9ad7e7d89a7cd3cf56e1ef1000d74c64 556 PANTHER PTHR34220:SF2 1 552 8.9E-240 T 14-09-2016 PAJ_RS11175 9ad7e7d89a7cd3cf56e1ef1000d74c64 556 SUPERFAMILY SSF55781 220 342 5.15E-8 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 PANTHER PTHR11695:SF285 13 343 1.6E-157 T 14-09-2016 PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 341 60.639 T 14-09-2016 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378|UniPathway: UPA00046 PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 Gene3D G3DSA:3.90.180.10 1 173 3.6E-53 T 14-09-2016 IPR011032 GroES-like PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 SUPERFAMILY SSF51735 142 306 1.5E-37 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 Gene3D G3DSA:3.40.50.720 174 288 1.1E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 135 5.4E-33 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 341 1.2E-178 T 14-09-2016 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378|UniPathway: UPA00046 PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 14-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 Pfam PF00107 Zinc-binding dehydrogenase 175 302 6.4E-27 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 SMART SM00829 12 339 8.1E-6 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 PANTHER PTHR11695 13 343 1.6E-157 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS17200 632b92cc11657c81c068ce2f13647e8d 344 SUPERFAMILY SSF50129 1 174 3.96E-55 T 14-09-2016 IPR011032 GroES-like PAJ_RS17500 a6dd792d589bbc97e02ab17db0422419 190 SUPERFAMILY SSF53448 4 184 1.41E-36 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS17500 a6dd792d589bbc97e02ab17db0422419 190 Gene3D G3DSA:3.90.550.10 1 188 9.6E-58 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS17500 a6dd792d589bbc97e02ab17db0422419 190 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 5 184 2.9E-69 T 14-09-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 PAJ_RS17500 a6dd792d589bbc97e02ab17db0422419 190 PANTHER PTHR19136 5 189 4.5E-51 T 14-09-2016 PAJ_RS17500 a6dd792d589bbc97e02ab17db0422419 190 Pfam PF12804 MobA-like NTP transferase domain 6 161 9.6E-36 T 14-09-2016 IPR025877 MobA-like NTP transferase PAJ_RS17500 a6dd792d589bbc97e02ab17db0422419 190 PANTHER PTHR19136:SF81 5 189 4.5E-51 T 14-09-2016 PAJ_RS17500 a6dd792d589bbc97e02ab17db0422419 190 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 2 187 29.386 T 14-09-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 PAJ_RS05670 cc25fe2bb6203c7e3d642557d18c3bac 488 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 238 245 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS05670 cc25fe2bb6203c7e3d642557d18c3bac 488 Gene3D G3DSA:3.40.605.10 3 252 2.6E-71 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS05670 cc25fe2bb6203c7e3d642557d18c3bac 488 Gene3D G3DSA:3.40.309.10 253 439 2.2E-42 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS05670 cc25fe2bb6203c7e3d642557d18c3bac 488 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 4 482 1.1E-240 T 14-09-2016 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71|UniPathway: UPA00185 PAJ_RS05670 cc25fe2bb6203c7e3d642557d18c3bac 488 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 1 482 55.672 T 14-09-2016 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71|UniPathway: UPA00185 PAJ_RS05670 cc25fe2bb6203c7e3d642557d18c3bac 488 SUPERFAMILY SSF53720 2 451 1.2E-120 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS05670 cc25fe2bb6203c7e3d642557d18c3bac 488 Pfam PF00171 Aldehyde dehydrogenase family 9 454 1.7E-116 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS05670 cc25fe2bb6203c7e3d642557d18c3bac 488 PANTHER PTHR11699:SF197 1 448 3.1E-283 T 14-09-2016 PAJ_RS05670 cc25fe2bb6203c7e3d642557d18c3bac 488 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 266 277 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS05670 cc25fe2bb6203c7e3d642557d18c3bac 488 PANTHER PTHR11699 1 448 3.1E-283 T 14-09-2016 PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 Gene3D G3DSA:3.30.1730.10 5 170 1.3E-60 T 14-09-2016 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 SUPERFAMILY SSF53167 10 484 2.49E-154 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 Gene3D G3DSA:3.40.50.1580 174 466 6.1E-113 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 12 167 2.7E-53 T 14-09-2016 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 Pfam PF01048 Phosphorylase superfamily 269 430 3.7E-18 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 11 484 1.1E-224 T 14-09-2016 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 PANTHER PTHR21234:SF11 180 225 2.6E-132 T 14-09-2016 PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 PANTHER PTHR21234:SF11 249 484 2.6E-132 T 14-09-2016 PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 PANTHER PTHR21234 180 225 2.6E-132 T 14-09-2016 IPR018017 Nucleoside phosphorylase PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 PANTHER PTHR21234 249 484 2.6E-132 T 14-09-2016 IPR018017 Nucleoside phosphorylase PAJ_RS09320 13a6ea9cd0dfead5a8309384f33ace08 484 Hamap MF_01932 AMP nucleosidase [amn]. 3 484 58.764 T 14-09-2016 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 PAJ_RS10800 be4be36fc3ec9d8cf727c30781f6f081 216 PANTHER PTHR30353:SF0 1 216 4.1E-98 T 14-09-2016 PAJ_RS10800 be4be36fc3ec9d8cf727c30781f6f081 216 PANTHER PTHR30353 1 216 4.1E-98 T 14-09-2016 IPR032818 DedA family PAJ_RS10800 be4be36fc3ec9d8cf727c30781f6f081 216 Pfam PF09335 SNARE associated Golgi protein 49 177 7.7E-24 T 14-09-2016 IPR032816 SNARE associated Golgi protein PAJ_RS15155 b2de5ad3ed36105ea5649147a8fd4634 478 SUPERFAMILY SSF103473 18 440 3.14E-31 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS15155 b2de5ad3ed36105ea5649147a8fd4634 478 PANTHER PTHR11328:SF40 6 477 2.9E-283 T 14-09-2016 PAJ_RS15155 b2de5ad3ed36105ea5649147a8fd4634 478 PANTHER PTHR11328 6 477 2.9E-283 T 14-09-2016 PAJ_RS15155 b2de5ad3ed36105ea5649147a8fd4634 478 Pfam PF13347 MFS/sugar transport protein 19 440 1.6E-84 T 14-09-2016 PAJ_RS15155 b2de5ad3ed36105ea5649147a8fd4634 478 Gene3D G3DSA:1.20.1250.20 25 208 2.4E-6 T 14-09-2016 PAJ_RS15155 b2de5ad3ed36105ea5649147a8fd4634 478 Gene3D G3DSA:1.20.1250.20 237 440 6.0E-13 T 14-09-2016 PAJ_RS15155 b2de5ad3ed36105ea5649147a8fd4634 478 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 17 452 1.5E-152 T 14-09-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 PAJ_RS15155 b2de5ad3ed36105ea5649147a8fd4634 478 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 68 95 - T 14-09-2016 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 PAJ_RS09315 d37449e886fc16bd7c31d9736ae7440a 471 TIGRFAM TIGR00797 matE: MATE efflux family protein 30 434 2.2E-68 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS09315 d37449e886fc16bd7c31d9736ae7440a 471 PANTHER PTHR11206 22 457 2.5E-94 T 14-09-2016 PAJ_RS09315 d37449e886fc16bd7c31d9736ae7440a 471 PANTHER PTHR11206:SF95 22 457 2.5E-94 T 14-09-2016 PAJ_RS09315 d37449e886fc16bd7c31d9736ae7440a 471 Pfam PF01554 MatE 30 190 2.0E-32 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS09315 d37449e886fc16bd7c31d9736ae7440a 471 Pfam PF01554 MatE 260 421 1.1E-24 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS09315 d37449e886fc16bd7c31d9736ae7440a 471 PIRSF PIRSF006603 17 467 2.1E-70 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS08305 4ffc2c7db07ef8776e310d20f003a244 222 Gene3D G3DSA:3.30.420.10 4 152 1.1E-35 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS08305 4ffc2c7db07ef8776e310d20f003a244 222 Pfam PF00929 Exonuclease 4 147 3.3E-13 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PAJ_RS08305 4ffc2c7db07ef8776e310d20f003a244 222 SMART SM00479 1 156 3.8E-33 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PAJ_RS08305 4ffc2c7db07ef8776e310d20f003a244 222 PANTHER PTHR30231 4 215 2.0E-37 T 14-09-2016 PAJ_RS08305 4ffc2c7db07ef8776e310d20f003a244 222 SUPERFAMILY SSF53098 4 152 3.74E-32 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 SUPERFAMILY SSF56634 50 586 1.7E-224 T 14-09-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 SMART SM01060 81 469 2.7E-268 T 14-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 ProSitePatterns PS00438 Catalase proximal active site signature. 117 133 - T 14-09-2016 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 411 419 - T 14-09-2016 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 PANTHER PTHR11465:SF7 60 634 0.0 T 14-09-2016 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 SUPERFAMILY SSF52317 598 712 6.87E-18 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 PIRSF PIRSF038927 44 752 0.0 T 14-09-2016 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 PANTHER PTHR11465 60 634 0.0 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 PRINTS PR00067 Catalase signature 398 424 3.8E-66 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 PRINTS PR00067 Catalase signature 178 195 3.8E-66 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 PRINTS PR00067 Catalase signature 366 393 3.8E-66 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 PRINTS PR00067 Catalase signature 94 117 3.8E-66 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 PRINTS PR00067 Catalase signature 197 215 3.8E-66 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 PRINTS PR00067 Catalase signature 157 175 3.8E-66 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 Gene3D G3DSA:3.40.50.880 600 754 3.0E-47 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 Pfam PF00199 Catalase 81 466 3.1E-175 T 14-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 Gene3D G3DSA:2.40.180.10 59 436 4.4E-179 T 14-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06055 813188af67a44e868c3668e89911ade5 754 Pfam PF06628 Catalase-related immune-responsive 499 562 3.4E-20 T 14-09-2016 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS10295 b11715b7c0af1e8b1704a21bb6df97cb 520 PANTHER PTHR33121 216 520 1.7E-100 T 14-09-2016 PAJ_RS10295 b11715b7c0af1e8b1704a21bb6df97cb 520 Pfam PF12792 CSS motif domain associated with EAL 67 242 6.0E-26 T 14-09-2016 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain PAJ_RS10295 b11715b7c0af1e8b1704a21bb6df97cb 520 Pfam PF00563 EAL domain 276 505 3.8E-59 T 14-09-2016 IPR001633 EAL domain PAJ_RS10295 b11715b7c0af1e8b1704a21bb6df97cb 520 SMART SM00052 265 510 2.9E-81 T 14-09-2016 IPR001633 EAL domain PAJ_RS10295 b11715b7c0af1e8b1704a21bb6df97cb 520 Gene3D G3DSA:3.20.20.450 273 518 2.3E-70 T 14-09-2016 IPR001633 EAL domain PAJ_RS10295 b11715b7c0af1e8b1704a21bb6df97cb 520 PANTHER PTHR33121:SF1 216 520 1.7E-100 T 14-09-2016 PAJ_RS10295 b11715b7c0af1e8b1704a21bb6df97cb 520 SUPERFAMILY SSF141868 272 517 1.44E-69 T 14-09-2016 IPR001633 EAL domain PAJ_RS05415 5e32fff4070f7f3446b61f5a9c2f8a8b 474 Gene3D G3DSA:3.40.50.2000 253 430 5.9E-51 T 14-09-2016 PAJ_RS05415 5e32fff4070f7f3446b61f5a9c2f8a8b 474 PANTHER PTHR10788:SF6 1 450 5.2E-101 T 14-09-2016 PAJ_RS05415 5e32fff4070f7f3446b61f5a9c2f8a8b 474 SUPERFAMILY SSF53756 14 450 7.77E-101 T 14-09-2016 PAJ_RS05415 5e32fff4070f7f3446b61f5a9c2f8a8b 474 Gene3D G3DSA:3.40.50.2000 12 235 4.4E-55 T 14-09-2016 PAJ_RS05415 5e32fff4070f7f3446b61f5a9c2f8a8b 474 PANTHER PTHR10788 1 450 5.2E-101 T 14-09-2016 PAJ_RS05415 5e32fff4070f7f3446b61f5a9c2f8a8b 474 Pfam PF00982 Glycosyltransferase family 20 13 449 7.9E-98 T 14-09-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 PANTHER PTHR11963 7 503 6.5E-265 T 14-09-2016 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 350 357 - T 14-09-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 Gene3D G3DSA:3.40.630.10 171 496 4.2E-138 T 14-09-2016 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 PANTHER PTHR11963:SF13 7 503 6.5E-265 T 14-09-2016 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 PRINTS PR00481 Cytosol aminopeptidase signature 374 389 2.0E-53 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 PRINTS PR00481 Cytosol aminopeptidase signature 324 345 2.0E-53 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 PRINTS PR00481 Cytosol aminopeptidase signature 346 366 2.0E-53 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 PRINTS PR00481 Cytosol aminopeptidase signature 287 308 2.0E-53 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 PRINTS PR00481 Cytosol aminopeptidase signature 265 282 2.0E-53 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 SUPERFAMILY SSF53187 180 496 5.65E-126 T 14-09-2016 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 2.3E-33 T 14-09-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 489 5.9E-119 T 14-09-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 498 41.055 T 14-09-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 SUPERFAMILY SSF52949 1 184 2.35E-52 T 14-09-2016 PAJ_RS20105 cb03bd242c70705570260dd874e787d8 503 Gene3D G3DSA:3.40.220.10 1 161 3.1E-66 T 14-09-2016 PAJ_RS12115 784436d4ca2dc1e306b84662d65ff2f7 116 Pfam PF04355 SmpA / OmlA family 35 104 5.1E-26 T 14-09-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 PAJ_RS12115 784436d4ca2dc1e306b84662d65ff2f7 116 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 7 112 30.82 T 14-09-2016 IPR026592 Outer membrane protein assembly factor BamE PAJ_RS12115 784436d4ca2dc1e306b84662d65ff2f7 116 PANTHER PTHR37482 1 115 1.9E-50 T 14-09-2016 PAJ_RS12115 784436d4ca2dc1e306b84662d65ff2f7 116 PANTHER PTHR37482:SF1 1 115 1.9E-50 T 14-09-2016 PAJ_RS15695 da4896bd364b7608cc6f9ef751fb8af7 314 Pfam PF00551 Formyl transferase 6 183 5.5E-54 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15695 da4896bd364b7608cc6f9ef751fb8af7 314 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 306 37.073 T 14-09-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15695 da4896bd364b7608cc6f9ef751fb8af7 314 SUPERFAMILY SSF53328 4 207 4.32E-69 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15695 da4896bd364b7608cc6f9ef751fb8af7 314 Gene3D G3DSA:3.40.50.170 4 208 4.6E-76 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15695 da4896bd364b7608cc6f9ef751fb8af7 314 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 14-09-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15695 da4896bd364b7608cc6f9ef751fb8af7 314 Pfam PF02911 Formyl transferase, C-terminal domain 207 303 6.5E-31 T 14-09-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15695 da4896bd364b7608cc6f9ef751fb8af7 314 Gene3D G3DSA:3.10.25.10 210 307 1.4E-34 T 14-09-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15695 da4896bd364b7608cc6f9ef751fb8af7 314 SUPERFAMILY SSF50486 208 310 1.13E-35 T 14-09-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 PAJ_RS15695 da4896bd364b7608cc6f9ef751fb8af7 314 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 309 1.5E-110 T 14-09-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15695 da4896bd364b7608cc6f9ef751fb8af7 314 PANTHER PTHR11138 2 306 5.4E-123 T 14-09-2016 PAJ_RS00580 f0ad0dd833a2766fded4eaf8bb899a2e 151 PANTHER PTHR33823 8 149 8.3E-71 T 14-09-2016 PAJ_RS00580 f0ad0dd833a2766fded4eaf8bb899a2e 151 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 28 150 30.045 T 14-09-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 PAJ_RS00580 f0ad0dd833a2766fded4eaf8bb899a2e 151 PANTHER PTHR33823:SF2 8 149 8.3E-71 T 14-09-2016 PAJ_RS00580 f0ad0dd833a2766fded4eaf8bb899a2e 151 SUPERFAMILY SSF57716 111 149 1.21E-9 T 14-09-2016 PAJ_RS00580 f0ad0dd833a2766fded4eaf8bb899a2e 151 SUPERFAMILY SSF109635 9 110 6.54E-38 T 14-09-2016 PAJ_RS00580 f0ad0dd833a2766fded4eaf8bb899a2e 151 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 32 140 1.9E-51 T 14-09-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 PAJ_RS00580 f0ad0dd833a2766fded4eaf8bb899a2e 151 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 114 138 - T 14-09-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site PAJ_RS00580 f0ad0dd833a2766fded4eaf8bb899a2e 151 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 111 143 4.3E-10 T 14-09-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 PAJ_RS15455 9863c49b651e51df1096bbfb4ad11ecb 1109 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 482 816 2.6E-113 T 14-09-2016 IPR025692 Mechanosensitive ion channel inner membrane domain 1 PAJ_RS15455 9863c49b651e51df1096bbfb4ad11ecb 1109 SUPERFAMILY SSF82689 987 1084 1.03E-13 T 14-09-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PAJ_RS15455 9863c49b651e51df1096bbfb4ad11ecb 1109 Gene3D G3DSA:2.30.30.60 935 984 2.1E-15 T 14-09-2016 PAJ_RS15455 9863c49b651e51df1096bbfb4ad11ecb 1109 PANTHER PTHR30347 1 1092 0.0 T 14-09-2016 PAJ_RS15455 9863c49b651e51df1096bbfb4ad11ecb 1109 Gene3D G3DSA:3.30.70.100 992 1074 1.1E-4 T 14-09-2016 PAJ_RS15455 9863c49b651e51df1096bbfb4ad11ecb 1109 SUPERFAMILY SSF50182 920 985 2.39E-16 T 14-09-2016 IPR010920 LSM domain PAJ_RS15455 9863c49b651e51df1096bbfb4ad11ecb 1109 PANTHER PTHR30347:SF0 1 1092 0.0 T 14-09-2016 PAJ_RS15455 9863c49b651e51df1096bbfb4ad11ecb 1109 Pfam PF12795 Mechanosensitive ion channel porin domain 31 259 1.8E-61 T 14-09-2016 IPR024393 Mechanosensitive ion channel MscS, porin domain PAJ_RS15455 9863c49b651e51df1096bbfb4ad11ecb 1109 Pfam PF00924 Mechanosensitive ion channel 877 1076 3.6E-48 T 14-09-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PAJ_RS15455 9863c49b651e51df1096bbfb4ad11ecb 1109 SUPERFAMILY SSF82861 836 918 1.96E-6 T 14-09-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 PAJ_RS12790 c14678f1cb7f0792d4b60b7d61622adf 111 Gene3D G3DSA:2.20.25.10 1 38 1.6E-14 T 14-09-2016 PAJ_RS12790 c14678f1cb7f0792d4b60b7d61622adf 111 Pfam PF03831 PhnA domain 44 111 5.8E-34 T 14-09-2016 IPR013988 PhnA protein, C-terminal PAJ_RS12790 c14678f1cb7f0792d4b60b7d61622adf 111 SUPERFAMILY SSF57783 1 35 1.29E-9 T 14-09-2016 PAJ_RS12790 c14678f1cb7f0792d4b60b7d61622adf 111 Pfam PF08274 PhnA Zinc-Ribbon 2 30 9.2E-8 T 14-09-2016 IPR013987 PhnA protein, N-terminal PAJ_RS12790 c14678f1cb7f0792d4b60b7d61622adf 111 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 2 111 8.6E-50 T 14-09-2016 IPR004624 PhnA protein PAJ_RS12790 c14678f1cb7f0792d4b60b7d61622adf 111 Gene3D G3DSA:2.30.30.40 42 110 3.7E-38 T 14-09-2016 PAJ_RS12790 c14678f1cb7f0792d4b60b7d61622adf 111 SUPERFAMILY SSF82057 40 110 9.16E-29 T 14-09-2016 PAJ_RS12790 c14678f1cb7f0792d4b60b7d61622adf 111 PANTHER PTHR30305 1 111 7.4E-74 T 14-09-2016 PAJ_RS00085 ca0531a34a0539ec1d41e8776cd135ce 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 284 8.4E-99 T 14-09-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 PAJ_RS00085 ca0531a34a0539ec1d41e8776cd135ce 316 Pfam PF02401 LytB protein 3 282 1.5E-91 T 14-09-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 PAJ_RS00085 ca0531a34a0539ec1d41e8776cd135ce 316 PANTHER PTHR30426 1 313 2.2E-162 T 14-09-2016 PAJ_RS00085 ca0531a34a0539ec1d41e8776cd135ce 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 286 38.153 T 14-09-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 PRINTS PR00969 Pili chaperone signature 138 153 1.7E-13 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 PRINTS PR00969 Pili chaperone signature 80 101 1.7E-13 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 PRINTS PR00969 Pili chaperone signature 110 127 1.7E-13 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 PRINTS PR00969 Pili chaperone signature 31 40 1.7E-13 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 PANTHER PTHR30251:SF7 1 259 1.1E-45 T 14-09-2016 PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 PANTHER PTHR30251 1 259 1.1E-45 T 14-09-2016 PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 184 248 5.3E-5 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 SUPERFAMILY SSF49354 26 153 5.76E-25 T 14-09-2016 IPR008962 PapD-like PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 31 153 5.7E-24 T 14-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 Gene3D G3DSA:2.60.40.360 31 153 1.2E-25 T 14-09-2016 IPR008962 PapD-like PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 SUPERFAMILY SSF49584 166 258 1.7E-5 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS20790 2b920a0f49fbf9ce1d11e14b50b399a4 263 Gene3D G3DSA:2.60.40.1070 165 254 1.2E-6 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 Gene3D G3DSA:3.40.1140.10 1 226 4.7E-48 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937 99 426 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937 977 1116 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937 1212 1248 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1424 6.6E-15 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PIRSF PIRSF005246 1 1486 0.0 T 14-09-2016 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 SUPERFAMILY SSF52540 1268 1433 8.86E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 SUPERFAMILY SSF52540 21 55 8.86E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937:SF201 1212 1248 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937 847 878 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1471 11.042 T 14-09-2016 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937:SF201 99 426 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937:SF201 847 878 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937:SF201 1426 1459 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937:SF201 444 529 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 Pfam PF16330 MukB hinge domain 645 810 1.3E-75 T 14-09-2016 IPR032520 MukB, hinge domain PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937 560 814 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937 897 938 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 SUPERFAMILY SSF52540 22 224 1.75E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 Pfam PF04310 MukB N-terminal 2 227 1.2E-121 T 14-09-2016 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937 1426 1459 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937 444 529 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937:SF201 560 814 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937:SF201 897 938 0.0 T 14-09-2016 PAJ_RS03695 6332bee340a8279c292eb4397463055f 1488 PANTHER PTHR18937:SF201 977 1116 0.0 T 14-09-2016 PAJ_RS18155 264c138e457914705b0f5b403ce728b2 328 SUPERFAMILY SSF52540 3 253 1.18E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18155 264c138e457914705b0f5b403ce728b2 328 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS18155 264c138e457914705b0f5b403ce728b2 328 PANTHER PTHR24220 5 320 3.2E-225 T 14-09-2016 PAJ_RS18155 264c138e457914705b0f5b403ce728b2 328 Gene3D G3DSA:3.40.50.300 2 255 6.3E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18155 264c138e457914705b0f5b403ce728b2 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 316 2.7E-26 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS18155 264c138e457914705b0f5b403ce728b2 328 Pfam PF00005 ABC transporter 24 181 9.8E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS18155 264c138e457914705b0f5b403ce728b2 328 PANTHER PTHR24220:SF576 5 320 3.2E-225 T 14-09-2016 PAJ_RS18155 264c138e457914705b0f5b403ce728b2 328 SMART SM00382 32 231 1.4E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS18155 264c138e457914705b0f5b403ce728b2 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 4.2E-18 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 SUPERFAMILY SSF55681 4 255 3.13E-109 T 14-09-2016 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 SUPERFAMILY SSF101353 256 465 4.05E-62 T 14-09-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 PANTHER PTHR11777:SF9 1 875 0.0 T 14-09-2016 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 875 207.03 T 14-09-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 854 0.0 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 Pfam PF02272 DHHA1 domain 800 866 1.8E-15 T 14-09-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 PANTHER PTHR11777 1 875 0.0 T 14-09-2016 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 653 696 7.8E-17 T 14-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 SUPERFAMILY SSF50447 456 552 2.72E-19 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 Gene3D G3DSA:3.30.930.10 4 251 7.0E-128 T 14-09-2016 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 Pfam PF01411 tRNA synthetases class II (A) 7 555 3.8E-236 T 14-09-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 SMART SM00863 653 696 2.5E-20 T 14-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 306 319 2.5E-33 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 236 249 2.5E-33 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 282 298 2.5E-33 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 2.5E-33 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 209 220 2.5E-33 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PAJ_RS12765 0e9f4bffed11178aa3d0495a27810333 875 SUPERFAMILY SSF55186 552 707 5.49E-53 T 14-09-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 PAJ_RS14520 4c99cf60971939370043a183de33a36a 102 SUPERFAMILY SSF54909 1 97 7.87E-30 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS14520 4c99cf60971939370043a183de33a36a 102 Gene3D G3DSA:3.30.70.900 1 100 1.7E-34 T 14-09-2016 PAJ_RS14520 4c99cf60971939370043a183de33a36a 102 PANTHER PTHR33336 1 100 2.9E-17 T 14-09-2016 PAJ_RS14520 4c99cf60971939370043a183de33a36a 102 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 83 9.3E-19 T 14-09-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain PAJ_RS07930 b67920a45d584a250795c9faa3e9f14e 136 Pfam PF01641 SelR domain 12 127 1.7E-52 T 14-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 PAJ_RS07930 b67920a45d584a250795c9faa3e9f14e 136 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 8 134 5.0E-60 T 14-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 PAJ_RS07930 b67920a45d584a250795c9faa3e9f14e 136 SUPERFAMILY SSF51316 8 132 1.88E-57 T 14-09-2016 IPR011057 Mss4-like PAJ_RS07930 b67920a45d584a250795c9faa3e9f14e 136 PANTHER PTHR10173:SF18 8 136 1.3E-60 T 14-09-2016 PAJ_RS07930 b67920a45d584a250795c9faa3e9f14e 136 PANTHER PTHR10173 8 136 1.3E-60 T 14-09-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 PAJ_RS07930 b67920a45d584a250795c9faa3e9f14e 136 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 2 129 37.224 T 14-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 PAJ_RS07930 b67920a45d584a250795c9faa3e9f14e 136 Gene3D G3DSA:2.170.150.20 8 133 3.9E-59 T 14-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 Gene3D G3DSA:3.30.390.10 3 126 3.5E-54 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 SUPERFAMILY SSF51604 143 427 6.08E-128 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 SMART SM01193 4 134 1.3E-90 T 14-09-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 Pfam PF03952 Enolase, N-terminal domain 4 134 1.2E-56 T 14-09-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 429 1.1E-139 T 14-09-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 PANTHER PTHR11902 1 427 4.2E-271 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 ProSitePatterns PS00164 Enolase signature. 339 352 - T 14-09-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 428 1.6E-203 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 PRINTS PR00148 Enolase signature 107 123 9.8E-45 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 PRINTS PR00148 Enolase signature 37 51 9.8E-45 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 PRINTS PR00148 Enolase signature 368 385 9.8E-45 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 PRINTS PR00148 Enolase signature 316 327 9.8E-45 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 PRINTS PR00148 Enolase signature 165 178 9.8E-45 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 PRINTS PR00148 Enolase signature 339 353 9.8E-45 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 PIRSF PIRSF001400 1 430 2.3E-190 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 Gene3D G3DSA:3.20.20.120 130 428 1.2E-134 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 Hamap MF_00318 Enolase [eno]. 2 416 43.833 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 SUPERFAMILY SSF54826 3 138 6.63E-55 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS12975 610c85e8c681af9bf0163aba96ef5245 431 SMART SM01192 143 430 9.6E-214 T 14-09-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PAJ_RS09745 b0f621d96fccd9fd352fafb51e11a468 301 PANTHER PTHR22981:SF27 5 301 6.9E-128 T 14-09-2016 PAJ_RS09745 b0f621d96fccd9fd352fafb51e11a468 301 PIRSF PIRSF000103 2 293 3.9E-59 T 14-09-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 PAJ_RS09745 b0f621d96fccd9fd352fafb51e11a468 301 Gene3D G3DSA:3.40.50.720 5 166 5.8E-42 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09745 b0f621d96fccd9fd352fafb51e11a468 301 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 8 21 - T 14-09-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 PAJ_RS09745 b0f621d96fccd9fd352fafb51e11a468 301 PANTHER PTHR22981 5 301 6.9E-128 T 14-09-2016 PAJ_RS09745 b0f621d96fccd9fd352fafb51e11a468 301 SUPERFAMILY SSF51735 5 165 1.18E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09745 b0f621d96fccd9fd352fafb51e11a468 301 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 169 288 4.7E-35 T 14-09-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 PAJ_RS09745 b0f621d96fccd9fd352fafb51e11a468 301 Gene3D G3DSA:1.10.1040.10 169 290 1.7E-44 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS09745 b0f621d96fccd9fd352fafb51e11a468 301 SUPERFAMILY SSF48179 167 291 2.38E-37 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS09745 b0f621d96fccd9fd352fafb51e11a468 301 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 164 4.2E-38 T 14-09-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 PAJ_RS08690 c5f21f97c809580515cdfeb35698a09b 266 Gene3D G3DSA:3.40.190.10 120 221 3.2E-31 T 14-09-2016 PAJ_RS08690 c5f21f97c809580515cdfeb35698a09b 266 PANTHER PTHR18966:SF189 1 264 6.1E-152 T 14-09-2016 PAJ_RS08690 c5f21f97c809580515cdfeb35698a09b 266 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 65 78 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS08690 c5f21f97c809580515cdfeb35698a09b 266 Gene3D G3DSA:3.40.190.10 39 119 1.2E-47 T 14-09-2016 PAJ_RS08690 c5f21f97c809580515cdfeb35698a09b 266 Gene3D G3DSA:3.40.190.10 222 265 1.2E-47 T 14-09-2016 PAJ_RS08690 c5f21f97c809580515cdfeb35698a09b 266 SMART SM00079 42 262 1.1E-4 T 14-09-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 PAJ_RS08690 c5f21f97c809580515cdfeb35698a09b 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 261 6.7E-73 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS08690 c5f21f97c809580515cdfeb35698a09b 266 PANTHER PTHR18966 1 264 6.1E-152 T 14-09-2016 PAJ_RS08690 c5f21f97c809580515cdfeb35698a09b 266 SUPERFAMILY SSF53850 15 264 1.52E-76 T 14-09-2016 PAJ_RS08690 c5f21f97c809580515cdfeb35698a09b 266 SMART SM00062 42 263 5.8E-88 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS14930 7ec5edbbcbf2146ea639c2e67ec9a43c 210 Gene3D G3DSA:3.40.1050.10 5 203 8.9E-64 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS14930 7ec5edbbcbf2146ea639c2e67ec9a43c 210 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 44 51 - T 14-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS14930 7ec5edbbcbf2146ea639c2e67ec9a43c 210 Pfam PF00484 Carbonic anhydrase 40 197 5.8E-44 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS14930 7ec5edbbcbf2146ea639c2e67ec9a43c 210 SMART SM00947 32 201 9.6E-57 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS14930 7ec5edbbcbf2146ea639c2e67ec9a43c 210 PANTHER PTHR11002:SF20 1 200 7.1E-65 T 14-09-2016 PAJ_RS14930 7ec5edbbcbf2146ea639c2e67ec9a43c 210 SUPERFAMILY SSF53056 4 200 1.96E-56 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS14930 7ec5edbbcbf2146ea639c2e67ec9a43c 210 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 84 104 - T 14-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS14930 7ec5edbbcbf2146ea639c2e67ec9a43c 210 PANTHER PTHR11002 1 200 7.1E-65 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS07620 04b13da60ae368d6c4171cb087314498 197 PANTHER PTHR21327 1 194 8.2E-143 T 14-09-2016 PAJ_RS07620 04b13da60ae368d6c4171cb087314498 197 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 5 194 4.7E-93 T 14-09-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PAJ_RS07620 04b13da60ae368d6c4171cb087314498 197 Pfam PF00925 GTP cyclohydrolase II 4 170 7.9E-69 T 14-09-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PAJ_RS07620 04b13da60ae368d6c4171cb087314498 197 SUPERFAMILY SSF142695 3 173 5.75E-68 T 14-09-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PAJ_RS07620 04b13da60ae368d6c4171cb087314498 197 PANTHER PTHR21327:SF14 1 194 8.2E-143 T 14-09-2016 PAJ_RS07620 04b13da60ae368d6c4171cb087314498 197 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 48.642 T 14-09-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PAJ_RS09300 0ac456e2641eb0cfa7711f3db365ade9 446 PANTHER PTHR35566:SF1 1 446 2.6E-148 T 14-09-2016 PAJ_RS09300 0ac456e2641eb0cfa7711f3db365ade9 446 PANTHER PTHR35566 1 446 2.6E-148 T 14-09-2016 PAJ_RS09300 0ac456e2641eb0cfa7711f3db365ade9 446 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 442 1.7E-145 T 14-09-2016 IPR010263 Type VI secretion protein, VC_A0114 PAJ_RS09300 0ac456e2641eb0cfa7711f3db365ade9 446 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 441 1.7E-155 T 14-09-2016 IPR010263 Type VI secretion protein, VC_A0114 PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 Gene3D G3DSA:3.40.50.920 538 663 3.8E-51 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 14-09-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 Gene3D G3DSA:3.40.50.970 327 533 8.8E-81 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 Pfam PF02779 Transketolase, pyrimidine binding domain 354 524 4.5E-45 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 Gene3D G3DSA:3.40.50.970 5 322 4.7E-134 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 PANTHER PTHR11624:SF85 1 310 0.0 T 14-09-2016 PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 PANTHER PTHR11624 1 310 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 14-09-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 SUPERFAMILY SSF52518 6 331 1.02E-119 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 SUPERFAMILY SSF52922 533 664 6.15E-44 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 SMART SM00861 355 525 2.0E-66 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 PANTHER PTHR11624:SF85 334 663 0.0 T 14-09-2016 PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 PANTHER PTHR11624 334 663 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 1.3E-168 T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 Pfam PF02780 Transketolase, C-terminal domain 540 655 5.2E-19 T 14-09-2016 IPR033248 Transketolase, C-terminal domain PAJ_RS13410 69881be6e562e751d7d4ebef6ea44b4c 664 SUPERFAMILY SSF52518 332 526 5.5E-68 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS13630 eb67888ca371eaed0f46c7d4b127cae0 130 Gene3D G3DSA:3.30.70.260 70 104 4.3E-4 T 14-09-2016 PAJ_RS13630 eb67888ca371eaed0f46c7d4b127cae0 130 SUPERFAMILY SSF55021 4 69 8.91E-7 T 14-09-2016 PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 530 654 2.6E-47 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 Gene3D G3DSA:2.70.70.10 529 673 2.3E-56 T 14-09-2016 PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 Gene3D G3DSA:3.30.1360.60 417 493 3.0E-24 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 593 605 - T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 PANTHER PTHR30009:SF4 2 504 8.8E-250 T 14-09-2016 PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 SUPERFAMILY SSF51261 529 674 3.14E-51 T 14-09-2016 IPR011055 Duplicated hybrid motif PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 PANTHER PTHR30009 2 504 8.8E-250 T 14-09-2016 PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 Pfam PF02378 Phosphotransferase system, EIIC 10 322 9.5E-76 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 381 479 2.3E-19 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 1 490 5.7E-202 T 14-09-2016 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 432 449 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 Pfam PF00367 phosphotransferase system, EIIB 422 454 1.7E-12 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 531 651 3.7E-47 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS02595 c96bed51e557e769ea8459fe4eee9b2a 678 SUPERFAMILY SSF55604 419 492 1.7E-17 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS17030 bb2aa634cefe0b9834af1197ba75d4cc 386 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 380 5.1E-142 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS17030 bb2aa634cefe0b9834af1197ba75d4cc 386 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 190 204 - T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS17030 bb2aa634cefe0b9834af1197ba75d4cc 386 PIRSF PIRSF001434 1 383 5.3E-135 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS17030 bb2aa634cefe0b9834af1197ba75d4cc 386 Gene3D G3DSA:3.40.640.10 5 246 3.3E-90 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS17030 bb2aa634cefe0b9834af1197ba75d4cc 386 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 3 381 6.9E-206 T 14-09-2016 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|UniPathway: UPA00051 PAJ_RS17030 bb2aa634cefe0b9834af1197ba75d4cc 386 Gene3D G3DSA:3.90.1150.10 249 382 5.6E-49 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS17030 bb2aa634cefe0b9834af1197ba75d4cc 386 SUPERFAMILY SSF53383 5 381 1.81E-118 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS17030 bb2aa634cefe0b9834af1197ba75d4cc 386 PANTHER PTHR11808 1 385 1.3E-182 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS15180 efacc56d23a5eaedd718575a63d99f65 413 PANTHER PTHR15108 1 406 4.6E-104 T 14-09-2016 PAJ_RS15180 efacc56d23a5eaedd718575a63d99f65 413 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 32 387 2.0E-126 T 14-09-2016 PAJ_RS15180 efacc56d23a5eaedd718575a63d99f65 413 Hamap MF_00998 Sulfoquinovose isomerase. 1 413 84.725 T 14-09-2016 IPR030875 Sulfoquinovose isomerase GO:0061593 MetaCyc: PWY-7446 PAJ_RS15180 efacc56d23a5eaedd718575a63d99f65 413 SUPERFAMILY SSF48208 3 410 1.59E-116 T 14-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 PAJ_RS15180 efacc56d23a5eaedd718575a63d99f65 413 Gene3D G3DSA:1.50.10.10 2 395 1.1E-98 T 14-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 PANTHER PTHR32552 10 44 9.2E-198 T 14-09-2016 PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 Gene3D G3DSA:2.170.130.10 61 188 6.7E-35 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 Pfam PF07715 TonB-dependent Receptor Plug Domain 78 181 3.5E-20 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 Pfam PF00593 TonB dependent receptor 487 722 4.3E-27 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 707 724 - T 14-09-2016 IPR010917 TonB-dependent receptor, conserved site PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 PANTHER PTHR32552 70 724 9.2E-198 T 14-09-2016 PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 80 724 3.0E-142 T 14-09-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 SUPERFAMILY SSF56935 64 724 1.16E-139 T 14-09-2016 PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 PANTHER PTHR32552:SF17 70 724 9.2E-198 T 14-09-2016 PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 PANTHER PTHR32552:SF17 10 44 9.2E-198 T 14-09-2016 PAJ_RS05070 7721630e592686305fc2b6512e9f3859 724 Gene3D G3DSA:2.40.170.20 195 724 8.8E-160 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 SMART SM00493 259 330 1.3E-23 T 14-09-2016 IPR006171 Toprim domain PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Gene3D G3DSA:1.20.50.20 368 426 8.9E-27 T 14-09-2016 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 PANTHER PTHR30313 3 579 6.0E-180 T 14-09-2016 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Gene3D G3DSA:3.90.980.10 115 240 3.4E-49 T 14-09-2016 IPR013264 DNA primase, catalytic core, N-terminal PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 SUPERFAMILY SSF57783 4 100 1.87E-35 T 14-09-2016 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Gene3D G3DSA:1.10.860.10 439 580 6.9E-52 T 14-09-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Gene3D G3DSA:3.40.1360.10 241 367 1.2E-47 T 14-09-2016 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Pfam PF01807 CHC2 zinc finger 7 100 1.1E-40 T 14-09-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Pfam PF13155 Toprim-like 263 348 7.5E-15 T 14-09-2016 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Hamap MF_00974 DNA primase [dnaG]. 4 576 30.553 T 14-09-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 SUPERFAMILY SSF117023 447 577 5.62E-45 T 14-09-2016 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 TIGRFAM TIGR01391 dnaG: DNA primase 4 419 3.9E-153 T 14-09-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 251 1.5E-45 T 14-09-2016 IPR013264 DNA primase, catalytic core, N-terminal PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Pfam PF08278 DNA primase DnaG DnaB-binding 451 574 3.2E-35 T 14-09-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 SUPERFAMILY SSF56731 115 428 7.85E-117 T 14-09-2016 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 SMART SM00766 450 575 6.6E-47 T 14-09-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Pfam PF10410 DnaB-helicase binding domain of primase 369 424 6.4E-12 T 14-09-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 Gene3D G3DSA:3.90.580.10 1 101 1.0E-40 T 14-09-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 PAJ_RS14630 f92a2ee2f39740beca88f585db6f5b1f 581 SMART SM00400 36 90 8.0E-38 T 14-09-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 PAJ_RS12175 e6eb2fee8b4e376af25b8f9cb7d5f83a 264 PANTHER PTHR32552 25 250 2.6E-110 T 14-09-2016 PAJ_RS12175 e6eb2fee8b4e376af25b8f9cb7d5f83a 264 SUPERFAMILY SSF53098 89 254 1.82E-38 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS12175 e6eb2fee8b4e376af25b8f9cb7d5f83a 264 Pfam PF13276 HTH-like domain 30 80 4.0E-9 T 14-09-2016 IPR025948 HTH-like domain PAJ_RS12175 e6eb2fee8b4e376af25b8f9cb7d5f83a 264 PANTHER PTHR32552:SF26 25 250 2.6E-110 T 14-09-2016 PAJ_RS12175 e6eb2fee8b4e376af25b8f9cb7d5f83a 264 Gene3D G3DSA:3.30.420.10 90 246 1.8E-42 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS12175 e6eb2fee8b4e376af25b8f9cb7d5f83a 264 Pfam PF13683 Integrase core domain 181 246 5.3E-26 T 14-09-2016 IPR001584 Integrase, catalytic core GO:0015074 PAJ_RS10695 7a057b97aa8de2e816cf3f8870c85926 421 PANTHER PTHR30193:SF8 9 77 1.2E-143 T 14-09-2016 PAJ_RS10695 7a057b97aa8de2e816cf3f8870c85926 421 Gene3D G3DSA:1.10.3720.10 39 65 3.7E-47 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10695 7a057b97aa8de2e816cf3f8870c85926 421 Gene3D G3DSA:1.10.3720.10 185 414 3.7E-47 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10695 7a057b97aa8de2e816cf3f8870c85926 421 PANTHER PTHR30193 9 77 1.2E-143 T 14-09-2016 PAJ_RS10695 7a057b97aa8de2e816cf3f8870c85926 421 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 220 410 5.8E-8 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10695 7a057b97aa8de2e816cf3f8870c85926 421 PANTHER PTHR30193 180 417 1.2E-143 T 14-09-2016 PAJ_RS10695 7a057b97aa8de2e816cf3f8870c85926 421 SUPERFAMILY SSF161098 36 59 7.59E-43 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10695 7a057b97aa8de2e816cf3f8870c85926 421 SUPERFAMILY SSF161098 180 412 7.59E-43 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10695 7a057b97aa8de2e816cf3f8870c85926 421 PANTHER PTHR30193:SF8 180 417 1.2E-143 T 14-09-2016 PAJ_RS09065 e163143bb83b8604257591a50cda9002 267 PANTHER PTHR24220:SF558 10 258 9.6E-65 T 14-09-2016 PAJ_RS09065 e163143bb83b8604257591a50cda9002 267 Gene3D G3DSA:3.40.50.300 29 235 1.3E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09065 e163143bb83b8604257591a50cda9002 267 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS09065 e163143bb83b8604257591a50cda9002 267 SMART SM00382 39 222 4.8E-17 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09065 e163143bb83b8604257591a50cda9002 267 SUPERFAMILY SSF52540 25 235 5.12E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09065 e163143bb83b8604257591a50cda9002 267 Pfam PF00005 ABC transporter 30 177 5.3E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09065 e163143bb83b8604257591a50cda9002 267 PANTHER PTHR24220 10 258 9.6E-65 T 14-09-2016 PAJ_RS16480 bf849958dbf951d1fd63279a8cd40bdc 501 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 34 433 1.8E-144 T 14-09-2016 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 PAJ_RS16480 bf849958dbf951d1fd63279a8cd40bdc 501 ProSitePatterns PS00216 Sugar transport proteins signature 1. 316 333 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS16480 bf849958dbf951d1fd63279a8cd40bdc 501 Pfam PF00083 Sugar (and other) transporter 29 449 3.5E-69 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS16480 bf849958dbf951d1fd63279a8cd40bdc 501 SUPERFAMILY SSF103473 23 447 3.92E-70 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS16480 bf849958dbf951d1fd63279a8cd40bdc 501 PANTHER PTHR23508:SF17 4 463 6.8E-271 T 14-09-2016 PAJ_RS16480 bf849958dbf951d1fd63279a8cd40bdc 501 Gene3D G3DSA:1.20.1250.20 25 231 3.0E-22 T 14-09-2016 PAJ_RS16480 bf849958dbf951d1fd63279a8cd40bdc 501 Gene3D G3DSA:1.20.1250.20 253 445 1.3E-28 T 14-09-2016 PAJ_RS16480 bf849958dbf951d1fd63279a8cd40bdc 501 PANTHER PTHR23508 4 463 6.8E-271 T 14-09-2016 PAJ_RS16480 bf849958dbf951d1fd63279a8cd40bdc 501 SUPERFAMILY SSF103661 466 498 4.97E-11 T 14-09-2016 PAJ_RS16480 bf849958dbf951d1fd63279a8cd40bdc 501 Pfam PF08946 Osmosensory transporter coiled coil 455 500 2.6E-21 T 14-09-2016 IPR015041 Osmosensory transporter coiled coil PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 15 103 1.1E-18 T 14-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 SUPERFAMILY SSF51011 591 688 4.53E-9 T 14-09-2016 PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 PANTHER PTHR10357:SF74 603 689 0.0 T 14-09-2016 PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 SUPERFAMILY SSF51445 144 477 3.07E-126 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 SUPERFAMILY SSF51445 506 583 3.07E-126 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 Pfam PF00128 Alpha amylase, catalytic domain 199 284 2.8E-7 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 PANTHER PTHR10357 2 586 0.0 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 PANTHER PTHR10357 603 689 0.0 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 Gene3D G3DSA:2.60.40.10 11 162 1.2E-54 T 14-09-2016 IPR013783 Immunoglobulin-like fold PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 Gene3D G3DSA:3.20.20.80 163 584 1.6E-115 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 SMART SM00642 169 575 2.9E-7 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 Gene3D G3DSA:2.60.40.1180 590 689 3.6E-13 T 14-09-2016 IPR013780 Glycosyl hydrolase, all-beta PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 SUPERFAMILY SSF81296 11 157 3.08E-46 T 14-09-2016 IPR014756 Immunoglobulin E-set PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 PANTHER PTHR10357:SF74 2 586 0.0 T 14-09-2016 PAJ_RS06040 0d33bb313b2c66ea25bd41b1cf05f3b7 690 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 11 688 0.0 T 14-09-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 PAJ_RS00705 f16570d164ee18e173197a0cfd730efb 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.446 T 14-09-2016 IPR002661 Ribosome recycling factor GO:0006412 PAJ_RS00705 f16570d164ee18e173197a0cfd730efb 185 SUPERFAMILY SSF55194 2 184 3.53E-71 T 14-09-2016 IPR023584 Ribosome recycling factor domain PAJ_RS00705 f16570d164ee18e173197a0cfd730efb 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 1.7E-79 T 14-09-2016 IPR002661 Ribosome recycling factor GO:0006412 PAJ_RS00705 f16570d164ee18e173197a0cfd730efb 185 Gene3D G3DSA:1.10.132.20 67 184 6.3E-44 T 14-09-2016 IPR023584 Ribosome recycling factor domain PAJ_RS00705 f16570d164ee18e173197a0cfd730efb 185 Pfam PF01765 Ribosome recycling factor 20 183 2.7E-62 T 14-09-2016 IPR023584 Ribosome recycling factor domain PAJ_RS00705 f16570d164ee18e173197a0cfd730efb 185 PANTHER PTHR20982 1 185 7.5E-83 T 14-09-2016 IPR002661 Ribosome recycling factor GO:0006412 PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 SUPERFAMILY SSF52540 3 94 8.79E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 SUPERFAMILY SSF52540 126 243 8.79E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 PANTHER PTHR19211:SF45 1 575 1.2E-229 T 14-09-2016 PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 Pfam PF16326 ABC transporter C-terminal domain 565 633 8.6E-24 T 14-09-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 Gene3D G3DSA:1.20.58.410 580 625 2.8E-4 T 14-09-2016 PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 Pfam PF00005 ABC transporter 336 469 1.7E-23 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 Pfam PF00005 ABC transporter 19 185 9.1E-23 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 SUPERFAMILY SSF52540 310 501 3.88E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 SMART SM00382 28 230 5.8E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 SMART SM00382 344 515 1.6E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 Pfam PF12848 ABC transporter 224 296 2.7E-10 T 14-09-2016 IPR032781 ABC-transporter extension domain PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 PANTHER PTHR19211 1 575 1.2E-229 T 14-09-2016 PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 Gene3D G3DSA:3.40.50.300 318 543 9.3E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03795 5dd7cb50d24f83961df7a0025de06b0b 639 Gene3D G3DSA:3.40.50.300 2 271 6.6E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 14-09-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 SUPERFAMILY SSF51621 250 549 2.54E-109 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 PANTHER PTHR22931 50 550 2.2E-219 T 14-09-2016 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 1.4E-31 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 Gene3D G3DSA:3.20.20.60 256 572 6.3E-117 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 PIRSF PIRSF000732 1 574 6.8E-221 T 14-09-2016 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 251 541 1.5E-124 T 14-09-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 223 2.6E-24 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 SUPERFAMILY SSF47831 23 143 7.06E-34 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 1.3E-30 T 14-09-2016 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 1.3E-30 T 14-09-2016 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 1.3E-30 T 14-09-2016 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 1.3E-30 T 14-09-2016 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 Gene3D G3DSA:1.10.274.10 23 132 4.3E-39 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 Gene3D G3DSA:3.50.30.10 133 255 1.4E-42 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 566 6.4E-257 T 14-09-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 SUPERFAMILY SSF52009 125 247 7.06E-38 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS11330 739f8ffc4b026a3d470cd14d3e1c39b3 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 14-09-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 PAJ_RS09245 e760e18feaa9f9ffbb5f749a76a3869e 263 SMART SM00332 1 238 7.1E-6 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS09245 e760e18feaa9f9ffbb5f749a76a3869e 263 PANTHER PTHR13832 1 260 3.2E-27 T 14-09-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 PAJ_RS09245 e760e18feaa9f9ffbb5f749a76a3869e 263 Pfam PF13672 Protein phosphatase 2C 8 227 2.4E-13 T 14-09-2016 PAJ_RS09245 e760e18feaa9f9ffbb5f749a76a3869e 263 SUPERFAMILY SSF81606 1 240 5.49E-44 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS09245 e760e18feaa9f9ffbb5f749a76a3869e 263 SMART SM00331 9 240 1.1E-9 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS09245 e760e18feaa9f9ffbb5f749a76a3869e 263 Gene3D G3DSA:3.60.40.10 2 240 1.9E-43 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS09245 e760e18feaa9f9ffbb5f749a76a3869e 263 PANTHER PTHR13832:SF226 1 260 3.2E-27 T 14-09-2016 PAJ_RS20360 c4a7a7b478662d3e3d8cb9495a8acfdb 428 PIRSF PIRSF002808 1 423 2.4E-41 T 14-09-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS20360 c4a7a7b478662d3e3d8cb9495a8acfdb 428 SUPERFAMILY SSF103473 4 416 2.62E-86 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20360 c4a7a7b478662d3e3d8cb9495a8acfdb 428 Pfam PF07690 Major Facilitator Superfamily 15 294 2.7E-50 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS20360 c4a7a7b478662d3e3d8cb9495a8acfdb 428 PANTHER PTHR11662:SF285 1 417 1.1E-190 T 14-09-2016 PAJ_RS20360 c4a7a7b478662d3e3d8cb9495a8acfdb 428 PANTHER PTHR11662 1 417 1.1E-190 T 14-09-2016 PAJ_RS20360 c4a7a7b478662d3e3d8cb9495a8acfdb 428 Gene3D G3DSA:1.20.1250.20 5 199 4.0E-51 T 14-09-2016 PAJ_RS20360 c4a7a7b478662d3e3d8cb9495a8acfdb 428 Gene3D G3DSA:1.20.1250.20 215 416 1.1E-22 T 14-09-2016 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 PANTHER PTHR32089:SF63 165 515 1.6E-101 T 14-09-2016 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 SMART SM00304 214 266 2.9E-9 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 SMART SM00283 267 514 2.5E-67 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 Gene3D G3DSA:1.10.287.950 281 486 9.3E-50 T 14-09-2016 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 5.8E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 5.8E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 5.8E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 5.8E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 5.8E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 SUPERFAMILY SSF58104 234 514 1.96E-62 T 14-09-2016 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 Pfam PF05227 CHASE3 domain 40 181 1.7E-33 T 14-09-2016 IPR007891 CHASE3 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 513 5.1E-50 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 PANTHER PTHR32089 165 515 1.6E-101 T 14-09-2016 PAJ_RS00490 dfce2fff2b90c131b407f09a3e0d6559 515 Pfam PF00672 HAMP domain 197 262 2.3E-13 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 SUPERFAMILY SSF46785 10 102 7.16E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 PANTHER PTHR11751 17 103 5.8E-21 T 14-09-2016 PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 SMART SM00345 19 77 5.7E-13 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 77 7.8E-17 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 SMART SM00895 87 211 1.2E-15 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 SUPERFAMILY SSF48008 85 218 1.02E-26 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 Gene3D G3DSA:1.20.120.530 83 218 3.3E-30 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 Gene3D G3DSA:1.10.10.10 6 78 1.2E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 Pfam PF07729 FCD domain 87 210 8.5E-21 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 1.9E-5 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS20880 438116ec4bb43230113ef407c6025d1a 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 1.9E-5 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS12170 cad4e41820568d11a6385ae66f879013 88 SUPERFAMILY SSF46689 1 73 1.08E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS12170 cad4e41820568d11a6385ae66f879013 88 Pfam PF01527 Transposase 2 71 4.5E-23 T 14-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PAJ_RS12170 cad4e41820568d11a6385ae66f879013 88 PANTHER PTHR33609:SF1 2 87 1.7E-52 T 14-09-2016 PAJ_RS12170 cad4e41820568d11a6385ae66f879013 88 PANTHER PTHR33609 2 87 1.7E-52 T 14-09-2016 PAJ_RS12170 cad4e41820568d11a6385ae66f879013 88 Gene3D G3DSA:1.10.10.60 13 84 6.9E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS15360 16bbc6fbaab85261393293c58b2bfe57 147 SUPERFAMILY SSF46785 2 128 8.96E-32 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15360 16bbc6fbaab85261393293c58b2bfe57 147 Gene3D G3DSA:1.10.10.10 2 128 3.5E-37 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15360 16bbc6fbaab85261393293c58b2bfe57 147 PANTHER PTHR33221 2 147 1.4E-69 T 14-09-2016 PAJ_RS15360 16bbc6fbaab85261393293c58b2bfe57 147 Pfam PF02082 Transcriptional regulator 2 82 5.5E-22 T 14-09-2016 IPR000944 Transcription regulator Rrf2-type PAJ_RS15360 16bbc6fbaab85261393293c58b2bfe57 147 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 126 1.6E-32 T 14-09-2016 IPR000944 Transcription regulator Rrf2-type PAJ_RS15360 16bbc6fbaab85261393293c58b2bfe57 147 PANTHER PTHR33221:SF4 2 147 1.4E-69 T 14-09-2016 PAJ_RS04055 cd6e33fc8a1db6be3c3d32dafcf469ef 143 SUPERFAMILY SSF46785 6 59 1.24E-6 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04055 cd6e33fc8a1db6be3c3d32dafcf469ef 143 Pfam PF06069 PerC transcriptional activator 73 120 3.0E-8 T 14-09-2016 IPR024684 Transcriptional activator PerC/bacteriophage SfV Orf40 PAJ_RS04055 cd6e33fc8a1db6be3c3d32dafcf469ef 143 Gene3D G3DSA:1.10.10.10 6 58 3.9E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04055 cd6e33fc8a1db6be3c3d32dafcf469ef 143 Pfam PF08220 DeoR-like helix-turn-helix domain 5 50 1.2E-4 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS09720 5c43b4205e0d2312a639a038cc6ba61c 473 PANTHER PTHR11046 7 473 6.7E-282 T 14-09-2016 PAJ_RS09720 5c43b4205e0d2312a639a038cc6ba61c 473 PANTHER PTHR11046:SF2 7 473 6.7E-282 T 14-09-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 PAJ_RS09720 5c43b4205e0d2312a639a038cc6ba61c 473 SMART SM00479 7 200 4.0E-4 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PAJ_RS09720 5c43b4205e0d2312a639a038cc6ba61c 473 SUPERFAMILY SSF53098 7 471 9.11E-137 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS09720 5c43b4205e0d2312a639a038cc6ba61c 473 Pfam PF00929 Exonuclease 10 187 6.8E-26 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PAJ_RS09720 5c43b4205e0d2312a639a038cc6ba61c 473 Gene3D G3DSA:3.30.420.10 5 198 3.4E-85 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS09720 5c43b4205e0d2312a639a038cc6ba61c 473 Pfam PF08411 Exonuclease C-terminal 209 469 4.3E-105 T 14-09-2016 IPR013620 Exonuclease C-terminal GO:0006281|GO:0008852 PAJ_RS09720 5c43b4205e0d2312a639a038cc6ba61c 473 PIRSF PIRSF000977 2 473 7.1E-201 T 14-09-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 PAJ_RS06690 0de88f26d29c6fc5fe78c8df3662459f 204 Pfam PF01569 PAP2 superfamily 66 170 1.3E-7 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS06690 0de88f26d29c6fc5fe78c8df3662459f 204 PANTHER PTHR14969 9 171 2.5E-30 T 14-09-2016 PAJ_RS06690 0de88f26d29c6fc5fe78c8df3662459f 204 SUPERFAMILY SSF48317 18 172 1.2E-27 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS06690 0de88f26d29c6fc5fe78c8df3662459f 204 Gene3D G3DSA:1.20.144.10 3 170 8.3E-21 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS06690 0de88f26d29c6fc5fe78c8df3662459f 204 PANTHER PTHR14969:SF20 9 171 2.5E-30 T 14-09-2016 PAJ_RS06690 0de88f26d29c6fc5fe78c8df3662459f 204 SMART SM00014 59 168 5.8E-9 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS00700 478abac4b6c8265bf08b247909086b14 241 PANTHER PTHR21499 4 240 1.7E-111 T 14-09-2016 PAJ_RS00700 478abac4b6c8265bf08b247909086b14 241 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 1.7E-103 T 14-09-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 PAJ_RS00700 478abac4b6c8265bf08b247909086b14 241 PIRSF PIRSF005650 4 241 3.3E-89 T 14-09-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 PAJ_RS00700 478abac4b6c8265bf08b247909086b14 241 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 43.721 T 14-09-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 PAJ_RS00700 478abac4b6c8265bf08b247909086b14 241 Gene3D G3DSA:3.40.1160.10 3 240 1.5E-85 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS00700 478abac4b6c8265bf08b247909086b14 241 PANTHER PTHR21499:SF23 4 240 1.7E-111 T 14-09-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 PAJ_RS00700 478abac4b6c8265bf08b247909086b14 241 Pfam PF00696 Amino acid kinase family 11 219 4.4E-27 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS00700 478abac4b6c8265bf08b247909086b14 241 SUPERFAMILY SSF53633 7 240 2.49E-72 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS00145 e6844cf12dbd3d1fff9e122a7ff00681 273 Pfam PF00398 Ribosomal RNA adenine dimethylase 9 265 2.7E-80 T 14-09-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm PAJ_RS00145 e6844cf12dbd3d1fff9e122a7ff00681 273 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 14-09-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 PAJ_RS00145 e6844cf12dbd3d1fff9e122a7ff00681 273 SMART SM00650 25 198 4.0E-83 T 14-09-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 PAJ_RS00145 e6844cf12dbd3d1fff9e122a7ff00681 273 Gene3D G3DSA:3.40.50.150 6 197 5.2E-68 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS00145 e6844cf12dbd3d1fff9e122a7ff00681 273 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 265 55.77 T 14-09-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 PAJ_RS00145 e6844cf12dbd3d1fff9e122a7ff00681 273 Gene3D G3DSA:1.10.8.100 201 266 2.3E-23 T 14-09-2016 IPR023165 rRNA adenine dimethylase-like PAJ_RS00145 e6844cf12dbd3d1fff9e122a7ff00681 273 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 10 264 2.1E-88 T 14-09-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 PAJ_RS00145 e6844cf12dbd3d1fff9e122a7ff00681 273 PANTHER PTHR11727 1 267 4.2E-98 T 14-09-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm PAJ_RS00145 e6844cf12dbd3d1fff9e122a7ff00681 273 SUPERFAMILY SSF53335 17 266 5.75E-77 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS04470 ae5045fda5994eb58d1b02e36e7256d2 252 SUPERFAMILY SSF117143 77 209 2.75E-19 T 14-09-2016 PAJ_RS04470 ae5045fda5994eb58d1b02e36e7256d2 252 Pfam PF00460 Flagella basal body rod protein 5 35 3.0E-10 T 14-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PAJ_RS04470 ae5045fda5994eb58d1b02e36e7256d2 252 PANTHER PTHR30435 1 250 3.6E-107 T 14-09-2016 PAJ_RS04470 ae5045fda5994eb58d1b02e36e7256d2 252 PANTHER PTHR30435:SF18 1 250 3.6E-107 T 14-09-2016 PAJ_RS04470 ae5045fda5994eb58d1b02e36e7256d2 252 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 120 2.9E-32 T 14-09-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G PAJ_RS04470 ae5045fda5994eb58d1b02e36e7256d2 252 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 170 247 2.3E-22 T 14-09-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain PAJ_RS04470 ae5045fda5994eb58d1b02e36e7256d2 252 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 14-09-2016 IPR019776 Flagellar basal body rod protein, conserved site PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 Pfam PF02954 Bacterial regulatory protein, Fis family 556 586 1.0E-8 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 SMART SM00382 315 459 1.1E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 SUPERFAMILY SSF55781 50 190 8.63E-7 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 Gene3D G3DSA:1.10.10.60 554 586 1.3E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 SUPERFAMILY SSF46689 546 589 6.81E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 PANTHER PTHR32071:SF5 307 586 9.0E-114 T 14-09-2016 PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 Pfam PF00158 Sigma-54 interaction domain 307 461 1.2E-58 T 14-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 Gene3D G3DSA:3.40.50.300 308 468 1.2E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 Gene3D G3DSA:1.10.8.60 488 540 9.8E-13 T 14-09-2016 PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 SUPERFAMILY SSF52540 311 537 1.15E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 556 573 2.9E-5 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 573 591 2.9E-5 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS01650 d21a6ddb9c1c3b0f82622f076edd048d 591 PANTHER PTHR32071 307 586 9.0E-114 T 14-09-2016 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 13 457 1.9E-140 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 Gene3D G3DSA:1.20.1250.20 256 458 1.4E-18 T 14-09-2016 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 Gene3D G3DSA:1.20.1250.20 29 208 2.3E-29 T 14-09-2016 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 PRINTS PR00171 Sugar transporter signature 33 43 4.1E-19 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 PRINTS PR00171 Sugar transporter signature 269 279 4.1E-19 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 PRINTS PR00171 Sugar transporter signature 362 383 4.1E-19 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 PRINTS PR00171 Sugar transporter signature 385 397 4.1E-19 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 PRINTS PR00171 Sugar transporter signature 116 135 4.1E-19 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 ProSitePatterns PS00216 Sugar transport proteins signature 1. 314 330 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 Pfam PF00083 Sugar (and other) transporter 27 460 6.8E-130 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 SUPERFAMILY SSF103473 14 458 5.75E-74 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 PANTHER PTHR23500 19 470 0.0 T 14-09-2016 PAJ_RS02240 ceeed866d725fa3476fa8fd348755703 472 PANTHER PTHR23500:SF119 19 470 0.0 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PANTHER PTHR11493 420 835 6.5E-280 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PANTHER PTHR11493 4 257 6.5E-280 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 847 949 8.5E-30 T 14-09-2016 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PANTHER PTHR11493:SF52 420 835 6.5E-280 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PANTHER PTHR11493:SF52 4 257 6.5E-280 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PRINTS PR00397 Sirohaem Fe-binding site signature 637 655 8.1E-7 T 14-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PRINTS PR00397 Sirohaem Fe-binding site signature 680 698 8.1E-7 T 14-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 SUPERFAMILY SSF51905 8 140 3.67E-15 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 Gene3D G3DSA:2.102.10.10 847 954 2.6E-35 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 680 696 - T 14-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 633 769 3.3E-21 T 14-09-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 1.5E-14 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 1.5E-14 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 1.5E-14 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 1.5E-14 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 287 7.5E-47 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 SUPERFAMILY SSF56014 634 801 1.57E-50 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 Gene3D G3DSA:3.30.413.10 633 769 4.7E-37 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 SUPERFAMILY SSF50022 847 952 1.37E-29 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 Gene3D G3DSA:3.50.50.60 8 107 1.2E-22 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 Pfam PF04324 BFD-like [2Fe-2S] binding domain 425 471 2.9E-8 T 14-09-2016 IPR007419 BFD-like [2Fe-2S]-binding domain PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 SUPERFAMILY SSF55124 503 642 2.94E-27 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 8 801 0.0 T 14-09-2016 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 UniPathway: UPA00653 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 277 284 1.8E-11 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 107 116 1.8E-11 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 174 1.8E-11 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 236 250 1.8E-11 T 14-09-2016 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 SUPERFAMILY SSF51905 106 310 2.42E-38 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 561 623 5.8E-12 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 Gene3D G3DSA:3.50.50.60 108 309 1.2E-46 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS05600 c4d92a617f4b48ee9ec75f8b68f0ff38 960 Pfam PF13806 Rieske-like [2Fe-2S] domain 847 949 1.5E-28 T 14-09-2016 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 Pfam PF07690 Major Facilitator Superfamily 9 353 1.8E-37 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 SUPERFAMILY SSF103473 5 384 1.11E-53 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 5 381 3.9E-73 T 14-09-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 PANTHER PTHR23502 5 382 9.0E-109 T 14-09-2016 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 Gene3D G3DSA:1.20.1250.20 3 183 1.6E-30 T 14-09-2016 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 Gene3D G3DSA:1.20.1250.20 202 383 7.1E-9 T 14-09-2016 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 ProSitePatterns PS00216 Sugar transport proteins signature 1. 58 74 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 PRINTS PR01035 Tetracycline resistance protein signature 14 30 1.6E-6 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 PRINTS PR01035 Tetracycline resistance protein signature 269 290 1.6E-6 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 PRINTS PR01035 Tetracycline resistance protein signature 44 63 1.6E-6 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 PRINTS PR01035 Tetracycline resistance protein signature 129 151 1.6E-6 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 PAJ_RS07980 2a53226854e6f3bf99dfbac204474c93 397 PANTHER PTHR23502:SF19 5 382 9.0E-109 T 14-09-2016 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 150 5.4E-60 T 14-09-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 5.5E-71 T 14-09-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 5.3E-135 T 14-09-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 Gene3D G3DSA:3.40.50.720 1 158 1.8E-78 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 Gene3D G3DSA:3.30.360.10 159 314 5.0E-86 T 14-09-2016 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 SUPERFAMILY SSF51735 3 166 1.81E-67 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 SMART SM00846 3 150 1.0E-96 T 14-09-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 PIRSF PIRSF000149 1 332 4.5E-134 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 PANTHER PTHR10836 1 332 4.5E-248 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 14-09-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 5.1E-46 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 5.1E-46 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 5.1E-46 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 5.1E-46 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 5.1E-46 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS07935 ef53326f66379e6c70446b56e71086ea 332 SUPERFAMILY SSF55347 149 312 3.74E-80 T 14-09-2016 PAJ_RS12955 22980b03ac09b0717011559bd441304b 223 PANTHER PTHR11228 1 56 4.8E-54 T 14-09-2016 PAJ_RS12955 22980b03ac09b0717011559bd441304b 223 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 223 37.02 T 14-09-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 PAJ_RS12955 22980b03ac09b0717011559bd441304b 223 PANTHER PTHR11228:SF6 1 56 4.8E-54 T 14-09-2016 PAJ_RS12955 22980b03ac09b0717011559bd441304b 223 Pfam PF13394 4Fe-4S single cluster domain 24 129 2.5E-12 T 14-09-2016 PAJ_RS12955 22980b03ac09b0717011559bd441304b 223 Gene3D G3DSA:3.20.20.70 29 122 8.8E-6 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS12955 22980b03ac09b0717011559bd441304b 223 PIRSF PIRSF000370 1 223 2.7E-71 T 14-09-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 PAJ_RS12955 22980b03ac09b0717011559bd441304b 223 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 9 223 3.4E-110 T 14-09-2016 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 PAJ_RS12955 22980b03ac09b0717011559bd441304b 223 SUPERFAMILY SSF102114 23 119 5.36E-6 T 14-09-2016 PAJ_RS12955 22980b03ac09b0717011559bd441304b 223 PANTHER PTHR11228 72 222 4.8E-54 T 14-09-2016 PAJ_RS12955 22980b03ac09b0717011559bd441304b 223 PANTHER PTHR11228:SF6 72 222 4.8E-54 T 14-09-2016 PAJ_RS05065 cd1adc7d52ca532c1f7d5f058abb1cda 297 PIRSF PIRSF001365 1 297 1.7E-49 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS05065 cd1adc7d52ca532c1f7d5f058abb1cda 297 Gene3D G3DSA:3.20.20.70 1 296 1.0E-72 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS05065 cd1adc7d52ca532c1f7d5f058abb1cda 297 PANTHER PTHR12128 1 296 6.0E-37 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS05065 cd1adc7d52ca532c1f7d5f058abb1cda 297 Pfam PF00701 Dihydrodipicolinate synthetase family 2 288 1.2E-31 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS05065 cd1adc7d52ca532c1f7d5f058abb1cda 297 SUPERFAMILY SSF51569 1 295 4.29E-54 T 14-09-2016 PAJ_RS05065 cd1adc7d52ca532c1f7d5f058abb1cda 297 SMART SM01130 1 295 2.2E-50 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS05065 cd1adc7d52ca532c1f7d5f058abb1cda 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 1.9E-6 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS05065 cd1adc7d52ca532c1f7d5f058abb1cda 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 126 143 1.9E-6 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS05065 cd1adc7d52ca532c1f7d5f058abb1cda 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 69 87 1.9E-6 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS11565 02dd7a23f25ef40011deea5f232a2d1c 231 PANTHER PTHR34875 1 228 4.3E-70 T 14-09-2016 PAJ_RS11565 02dd7a23f25ef40011deea5f232a2d1c 231 PANTHER PTHR34875:SF3 1 228 4.3E-70 T 14-09-2016 PAJ_RS11565 02dd7a23f25ef40011deea5f232a2d1c 231 SUPERFAMILY SSF55021 43 123 3.08E-16 T 14-09-2016 PAJ_RS11565 02dd7a23f25ef40011deea5f232a2d1c 231 Gene3D G3DSA:3.30.70.260 44 122 1.7E-31 T 14-09-2016 PAJ_RS11565 02dd7a23f25ef40011deea5f232a2d1c 231 SUPERFAMILY SSF55021 130 215 1.5E-12 T 14-09-2016 PAJ_RS11565 02dd7a23f25ef40011deea5f232a2d1c 231 Gene3D G3DSA:3.30.70.260 130 224 7.3E-33 T 14-09-2016 PAJ_RS11565 02dd7a23f25ef40011deea5f232a2d1c 231 Pfam PF13740 ACT domain 45 120 1.0E-24 T 14-09-2016 PAJ_RS01745 7051165a35956cb5b130d0c131dd58c6 132 PANTHER PTHR31793 1 131 5.6E-75 T 14-09-2016 PAJ_RS01745 7051165a35956cb5b130d0c131dd58c6 132 PANTHER PTHR31793:SF8 1 131 5.6E-75 T 14-09-2016 PAJ_RS01745 7051165a35956cb5b130d0c131dd58c6 132 Pfam PF13279 Thioesterase-like superfamily 11 125 1.7E-16 T 14-09-2016 PAJ_RS01745 7051165a35956cb5b130d0c131dd58c6 132 SUPERFAMILY SSF54637 3 130 4.84E-38 T 14-09-2016 IPR029069 HotDog domain PAJ_RS01745 7051165a35956cb5b130d0c131dd58c6 132 Gene3D G3DSA:3.10.129.10 2 130 1.7E-42 T 14-09-2016 IPR029069 HotDog domain PAJ_RS01745 7051165a35956cb5b130d0c131dd58c6 132 PIRSF PIRSF003230 1 132 2.1E-22 T 14-09-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 PAJ_RS01745 7051165a35956cb5b130d0c131dd58c6 132 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 7 119 2.2E-32 T 14-09-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 PAJ_RS12590 2c54c2456680557d8401c8aee8143790 431 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 28 417 7.9E-143 T 14-09-2016 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 PAJ_RS12590 2c54c2456680557d8401c8aee8143790 431 PANTHER PTHR23508 14 430 1.4E-279 T 14-09-2016 PAJ_RS12590 2c54c2456680557d8401c8aee8143790 431 ProSitePatterns PS00217 Sugar transport proteins signature 2. 131 156 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS12590 2c54c2456680557d8401c8aee8143790 431 Gene3D G3DSA:1.20.1250.20 15 227 1.8E-26 T 14-09-2016 PAJ_RS12590 2c54c2456680557d8401c8aee8143790 431 Gene3D G3DSA:1.20.1250.20 242 427 4.2E-21 T 14-09-2016 PAJ_RS12590 2c54c2456680557d8401c8aee8143790 431 Pfam PF00083 Sugar (and other) transporter 222 421 3.6E-16 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS12590 2c54c2456680557d8401c8aee8143790 431 Pfam PF00083 Sugar (and other) transporter 22 219 6.5E-25 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS12590 2c54c2456680557d8401c8aee8143790 431 PANTHER PTHR23508:SF12 14 430 1.4E-279 T 14-09-2016 PAJ_RS12590 2c54c2456680557d8401c8aee8143790 431 ProSitePatterns PS00216 Sugar transport proteins signature 1. 298 315 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS12590 2c54c2456680557d8401c8aee8143790 431 SUPERFAMILY SSF103473 16 430 4.84E-66 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS00295 211d2f350ba984179a00557a9398af74 588 Pfam PF03717 Penicillin-binding Protein dimerisation domain 68 220 3.4E-18 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PAJ_RS00295 211d2f350ba984179a00557a9398af74 588 Gene3D G3DSA:3.40.710.10 242 560 2.6E-84 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS00295 211d2f350ba984179a00557a9398af74 588 SUPERFAMILY SSF56519 63 234 5.89E-45 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PAJ_RS00295 211d2f350ba984179a00557a9398af74 588 SUPERFAMILY SSF56601 235 563 4.19E-85 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS00295 211d2f350ba984179a00557a9398af74 588 Pfam PF00905 Penicillin binding protein transpeptidase domain 260 554 6.4E-79 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PAJ_RS00295 211d2f350ba984179a00557a9398af74 588 Gene3D G3DSA:3.90.1310.10 142 241 3.1E-32 T 14-09-2016 PAJ_RS00295 211d2f350ba984179a00557a9398af74 588 PANTHER PTHR30627:SF1 9 587 9.8E-244 T 14-09-2016 PAJ_RS00295 211d2f350ba984179a00557a9398af74 588 PANTHER PTHR30627 9 587 9.8E-244 T 14-09-2016 PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 14-09-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 PIRSF PIRSF000097 1 272 1.2E-95 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 Pfam PF00248 Aldo/keto reductase family 200 260 2.7E-11 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 Pfam PF00248 Aldo/keto reductase family 18 192 4.4E-38 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 PANTHER PTHR11732 3 274 8.8E-133 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 SUPERFAMILY SSF51430 5 266 1.7E-87 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 Gene3D G3DSA:3.20.20.100 4 272 4.9E-103 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 123 140 - T 14-09-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 14-09-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 PRINTS PR00069 Aldo-keto reductase signature 37 61 1.6E-44 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 PRINTS PR00069 Aldo-keto reductase signature 157 186 1.6E-44 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 PRINTS PR00069 Aldo-keto reductase signature 91 109 1.6E-44 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 PRINTS PR00069 Aldo-keto reductase signature 196 220 1.6E-44 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS14455 bfb8fb00336d05cea65d16ffc6c9464b 275 PRINTS PR00069 Aldo-keto reductase signature 123 140 1.6E-44 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 1.7E-15 T 14-09-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 SUPERFAMILY SSF52518 120 546 2.36E-88 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 PIRSF PIRSF000157 1 934 0.0 T 14-09-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 Gene3D G3DSA:3.40.50.970 162 546 3.1E-78 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 PANTHER PTHR23152 1 935 0.0 T 14-09-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 PANTHER PTHR23152:SF4 1 935 0.0 T 14-09-2016 PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 Gene3D G3DSA:3.40.50.970 592 789 7.5E-26 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 Pfam PF00676 Dehydrogenase E1 component 220 513 2.3E-48 T 14-09-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 Pfam PF02779 Transketolase, pyrimidine binding domain 592 787 7.9E-67 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 932 0.0 T 14-09-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 SUPERFAMILY SSF52518 576 793 2.06E-52 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 791 932 9.7E-55 T 14-09-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 PAJ_RS02730 b8fd22436510b46b2fee6db0cca01be4 935 SMART SM00861 593 786 1.1E-62 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 663 690 - T 14-09-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 PANTHER PTHR11615 38 750 4.5E-211 T 14-09-2016 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 Gene3D G3DSA:3.40.50.740 361 453 2.0E-43 T 14-09-2016 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 Gene3D G3DSA:3.40.50.740 44 146 2.0E-43 T 14-09-2016 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 Gene3D G3DSA:3.40.228.10 152 360 5.9E-44 T 14-09-2016 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 452 469 - T 14-09-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 Pfam PF01568 Molydopterin dinucleotide binding domain 624 744 4.5E-25 T 14-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 SUPERFAMILY SSF50692 619 750 1.47E-34 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 Pfam PF00384 Molybdopterin oxidoreductase 51 508 1.7E-64 T 14-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 SUPERFAMILY SSF53706 9 625 3.4E-152 T 14-09-2016 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 Gene3D G3DSA:3.90.55.10 454 556 8.4E-35 T 14-09-2016 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 PANTHER PTHR11615:SF19 38 750 4.5E-211 T 14-09-2016 PAJ_RS20010 6953cf33d462d0430f0fba72238a8af8 757 Gene3D G3DSA:2.40.40.20 599 751 6.3E-49 T 14-09-2016 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 Gene3D G3DSA:1.10.10.60 3 57 4.2E-20 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 3.8E-5 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 3.8E-5 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 Pfam PF06445 GyrI-like small molecule binding domain 127 287 1.3E-17 T 14-09-2016 IPR029442 GyrI-like small molecule binding domain PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 Pfam PF12833 Helix-turn-helix domain 29 105 3.2E-20 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 PANTHER PTHR11019 6 112 8.5E-65 T 14-09-2016 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 SMART SM00342 21 104 2.6E-30 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 PANTHER PTHR11019:SF84 6 112 8.5E-65 T 14-09-2016 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 Gene3D G3DSA:1.10.10.60 58 119 1.3E-24 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 SUPERFAMILY SSF55136 125 287 1.28E-37 T 14-09-2016 IPR011256 Regulatory factor, effector binding domain PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 Gene3D G3DSA:3.20.80.10 124 288 6.3E-57 T 14-09-2016 IPR011256 Regulatory factor, effector binding domain PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 SMART SM00871 126 287 3.5E-6 T 14-09-2016 IPR010499 Bacterial transcription activator, effector binding PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 SUPERFAMILY SSF46689 6 55 3.58E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS20915 bbaea53bcf5cf19540227d44af90996c 288 SUPERFAMILY SSF46689 57 109 7.17E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 SMART SM00091 80 146 0.0039 T 14-09-2016 IPR000014 PAS domain PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 Gene3D G3DSA:3.30.70.260 2 68 3.9E-5 T 14-09-2016 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 SUPERFAMILY SSF55021 2 69 1.74E-5 T 14-09-2016 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 PANTHER PTHR32071:SF3 8 521 4.6E-212 T 14-09-2016 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 420 429 - T 14-09-2016 IPR025944 Sigma-54 interaction domain, conserved site PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 SUPERFAMILY SSF52540 207 448 6.48E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 Gene3D G3DSA:1.10.10.60 458 514 8.4E-27 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 Gene3D G3DSA:3.30.450.20 76 167 2.9E-8 T 14-09-2016 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 PANTHER PTHR32071 8 521 4.6E-212 T 14-09-2016 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 467 514 7.3E-28 T 14-09-2016 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 Gene3D G3DSA:1.10.8.60 380 450 2.5E-21 T 14-09-2016 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 293 308 - T 14-09-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 Pfam PF00158 Sigma-54 interaction domain 208 373 1.1E-60 T 14-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 SMART SM00382 227 371 4.4E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 Gene3D G3DSA:3.40.50.300 203 379 6.0E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 231 244 - T 14-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 SUPERFAMILY SSF46689 461 514 2.99E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS07460 a0f90e3000c8b7d34c5e16dbd0bc414f 521 SUPERFAMILY SSF55785 82 170 7.04E-6 T 14-09-2016 IPR000014 PAS domain PAJ_RS04815 b6481e5139f89e00bd4e68f863409081 338 PANTHER PTHR16222 6 318 3.2E-62 T 14-09-2016 PAJ_RS04815 b6481e5139f89e00bd4e68f863409081 338 PANTHER PTHR16222:SF12 6 318 3.2E-62 T 14-09-2016 PAJ_RS04815 b6481e5139f89e00bd4e68f863409081 338 SUPERFAMILY SSF101478 1 318 5.23E-63 T 14-09-2016 IPR005502 ADP-ribosylation/Crystallin J1 PAJ_RS04815 b6481e5139f89e00bd4e68f863409081 338 Pfam PF03747 ADP-ribosylglycohydrolase 10 304 6.1E-55 T 14-09-2016 IPR005502 ADP-ribosylation/Crystallin J1 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PANTHER PTHR24423:SF540 588 811 1.4E-182 T 14-09-2016 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PANTHER PTHR24423:SF540 194 231 1.4E-182 T 14-09-2016 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 SMART SM00448 665 778 6.2E-29 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 SMART SM00073 808 903 3.0E-7 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 Pfam PF00072 Response regulator receiver domain 667 778 7.1E-26 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 Gene3D G3DSA:1.20.120.160 772 906 3.1E-22 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 459 1.0E-12 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 498 1.0E-12 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 517 1.0E-12 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 473 1.0E-12 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PANTHER PTHR24423:SF540 6 20 1.4E-182 T 14-09-2016 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 SUPERFAMILY SSF52172 664 783 1.57E-32 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 Pfam PF00512 His Kinase A (phospho-acceptor) domain 293 357 7.9E-19 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 SMART SM00387 404 520 1.3E-37 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 404 519 1.1E-27 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 SUPERFAMILY SSF47226 761 898 1.02E-23 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 Gene3D G3DSA:1.10.287.130 284 353 3.2E-18 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 Gene3D G3DSA:3.40.50.2300 664 771 1.1E-33 T 14-09-2016 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 Pfam PF00672 HAMP domain 182 248 5.1E-11 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 SMART SM00388 292 357 1.0E-21 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 177 3.3E-50 T 14-09-2016 IPR019247 Histidine kinase BarA, N-terminal PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PANTHER PTHR24423 588 811 1.4E-182 T 14-09-2016 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PANTHER PTHR24423 194 231 1.4E-182 T 14-09-2016 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PANTHER PTHR24423:SF540 271 523 1.4E-182 T 14-09-2016 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 SUPERFAMILY SSF55874 346 518 2.75E-43 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 Gene3D G3DSA:3.30.565.10 358 523 6.7E-44 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 SUPERFAMILY SSF158472 200 249 4.18E-5 T 14-09-2016 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 SUPERFAMILY SSF47384 277 358 1.88E-21 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PANTHER PTHR24423 6 20 1.4E-182 T 14-09-2016 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 SMART SM00304 200 252 1.4E-7 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 Pfam PF01627 Hpt domain 817 899 4.8E-13 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS13000 db94b2a10c5e9e2d27d4a61ff3635b6e 909 PANTHER PTHR24423 271 523 1.4E-182 T 14-09-2016 PAJ_RS03060 ec81c37b81818d2d5a3777eb8d8ff767 340 Gene3D G3DSA:1.20.58.340 170 259 7.3E-6 T 14-09-2016 PAJ_RS03060 ec81c37b81818d2d5a3777eb8d8ff767 340 Gene3D G3DSA:1.20.58.340 267 336 1.5E-17 T 14-09-2016 PAJ_RS03060 ec81c37b81818d2d5a3777eb8d8ff767 340 Pfam PF01544 CorA-like Mg2+ transporter protein 51 333 3.3E-51 T 14-09-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 PAJ_RS03060 ec81c37b81818d2d5a3777eb8d8ff767 340 PANTHER PTHR21535 117 337 3.9E-22 T 14-09-2016 PAJ_RS03060 ec81c37b81818d2d5a3777eb8d8ff767 340 SUPERFAMILY SSF143865 19 271 2.09E-38 T 14-09-2016 PAJ_RS03060 ec81c37b81818d2d5a3777eb8d8ff767 340 Gene3D G3DSA:3.30.460.20 41 149 1.4E-6 T 14-09-2016 PAJ_RS03060 ec81c37b81818d2d5a3777eb8d8ff767 340 SUPERFAMILY SSF144083 276 336 1.18E-14 T 14-09-2016 PAJ_RS01225 8aa5fbc13056fe34a9916e22d8e4e374 213 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 205 3.2E-70 T 14-09-2016 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 PAJ_RS01225 8aa5fbc13056fe34a9916e22d8e4e374 213 PANTHER PTHR30074:SF5 1 210 6.5E-118 T 14-09-2016 PAJ_RS01225 8aa5fbc13056fe34a9916e22d8e4e374 213 PANTHER PTHR30074 1 210 6.5E-118 T 14-09-2016 PAJ_RS01225 8aa5fbc13056fe34a9916e22d8e4e374 213 SUPERFAMILY SSF81342 3 209 2.9E-54 T 14-09-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PAJ_RS01225 8aa5fbc13056fe34a9916e22d8e4e374 213 Pfam PF01292 Prokaryotic cytochrome b561 13 185 6.5E-22 T 14-09-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 PAJ_RS01225 8aa5fbc13056fe34a9916e22d8e4e374 213 Gene3D G3DSA:1.20.950.20 1 210 3.8E-73 T 14-09-2016 PAJ_RS00800 996e842d4f9572ebf4d149ffe07cfc37 66 Pfam PF06786 Uncharacterised protein family (UPF0253) 2 65 1.9E-34 T 14-09-2016 IPR009624 Uncharacterised protein family UPF0253 PAJ_RS00800 996e842d4f9572ebf4d149ffe07cfc37 66 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 66 25.79 T 14-09-2016 IPR009624 Uncharacterised protein family UPF0253 PAJ_RS00800 996e842d4f9572ebf4d149ffe07cfc37 66 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 1 66 9.0E-24 T 14-09-2016 IPR009624 Uncharacterised protein family UPF0253 PAJ_RS09445 7d149905f6d540365279f02209da0dfb 229 Gene3D G3DSA:3.40.50.850 5 227 1.7E-72 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS09445 7d149905f6d540365279f02209da0dfb 229 PANTHER PTHR11080 1 226 1.6E-95 T 14-09-2016 PAJ_RS09445 7d149905f6d540365279f02209da0dfb 229 Pfam PF00857 Isochorismatase family 24 219 1.4E-45 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS09445 7d149905f6d540365279f02209da0dfb 229 SUPERFAMILY SSF52499 7 226 2.22E-59 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS09445 7d149905f6d540365279f02209da0dfb 229 PANTHER PTHR11080:SF19 1 226 1.6E-95 T 14-09-2016 PAJ_RS12330 08644f2971f6784de146b5d92c0ff25c 199 Gene3D G3DSA:3.40.50.360 4 193 1.0E-39 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS12330 08644f2971f6784de146b5d92c0ff25c 199 SUPERFAMILY SSF52218 5 188 3.26E-43 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS12330 08644f2971f6784de146b5d92c0ff25c 199 Pfam PF02525 Flavodoxin-like fold 5 183 6.4E-35 T 14-09-2016 IPR003680 Flavodoxin-like fold PAJ_RS12330 08644f2971f6784de146b5d92c0ff25c 199 PANTHER PTHR10204 4 196 2.3E-55 T 14-09-2016 PAJ_RS12330 08644f2971f6784de146b5d92c0ff25c 199 PANTHER PTHR10204:SF0 4 196 2.3E-55 T 14-09-2016 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 PANTHER PTHR19139:SF103 1 228 4.3E-67 T 14-09-2016 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 ProSitePatterns PS00221 MIP family signature. 61 69 - T 14-09-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 PRINTS PR00783 Major intrinsic protein family signature 3 22 6.7E-48 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 PRINTS PR00783 Major intrinsic protein family signature 206 226 6.7E-48 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 PRINTS PR00783 Major intrinsic protein family signature 43 67 6.7E-48 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 PRINTS PR00783 Major intrinsic protein family signature 80 99 6.7E-48 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 PRINTS PR00783 Major intrinsic protein family signature 137 155 6.7E-48 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 PRINTS PR00783 Major intrinsic protein family signature 167 189 6.7E-48 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 PANTHER PTHR19139 1 228 4.3E-67 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 SUPERFAMILY SSF81338 2 228 5.36E-64 T 14-09-2016 IPR023271 Aquaporin-like PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 Hamap MF_01146 Aquaporin Z [aqpZ]. 2 230 33.704 T 14-09-2016 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 Pfam PF00230 Major intrinsic protein 2 222 2.7E-47 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 Gene3D G3DSA:1.20.1080.10 2 228 2.4E-65 T 14-09-2016 IPR023271 Aquaporin-like PAJ_RS08465 5dc56a2fcab50abef8b4fec9def53e6d 231 TIGRFAM TIGR00861 MIP: MIP family channel proteins 7 222 9.7E-56 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 Gene3D G3DSA:3.40.630.30 293 439 1.7E-40 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 Pfam PF00696 Amino acid kinase family 25 267 2.2E-31 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 Gene3D G3DSA:3.40.1160.10 23 290 6.0E-68 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 SUPERFAMILY SSF55729 296 418 1.1E-17 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 Pfam PF00583 Acetyltransferase (GNAT) family 346 413 1.2E-6 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 441 237.262 T 14-09-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 PANTHER PTHR30602 1 441 0.0 T 14-09-2016 PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 PANTHER PTHR30602:SF3 1 441 0.0 T 14-09-2016 PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 PIRSF PIRSF000423 1 441 7.1E-210 T 14-09-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 8 441 3.1E-200 T 14-09-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 PAJ_RS13140 4a592709b81bc8601e05fe9c1534c762 442 SUPERFAMILY SSF53633 4 290 1.03E-67 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 SUPERFAMILY SSF53335 135 242 6.55E-5 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 PANTHER PTHR13847 606 667 8.1E-143 T 14-09-2016 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 PANTHER PTHR13847:SF182 606 667 8.1E-143 T 14-09-2016 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 Gene3D G3DSA:3.40.50.150 11 249 2.4E-102 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 7 660 28.232 T 14-09-2016 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 PANTHER PTHR13847 226 585 8.1E-143 T 14-09-2016 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 SUPERFAMILY SSF51905 266 541 4.32E-34 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 118 244 3.6E-48 T 14-09-2016 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 Gene3D G3DSA:3.50.50.60 394 477 1.9E-25 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 Gene3D G3DSA:3.50.50.60 571 657 1.9E-25 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 Gene3D G3DSA:3.50.50.60 266 336 1.9E-25 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 267 665 9.3E-152 T 14-09-2016 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 Pfam PF01266 FAD dependent oxidoreductase 267 635 1.0E-47 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PAJ_RS10870 efbc5df409b404097db8e3c5706aafa4 670 PANTHER PTHR13847:SF182 226 585 8.1E-143 T 14-09-2016 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 PANTHER PTHR28286 10 223 2.1E-16 T 14-09-2016 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 PRINTS PR00251 Bacterial opsin signature 128 149 3.8E-26 T 14-09-2016 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 PRINTS PR00251 Bacterial opsin signature 169 187 3.8E-26 T 14-09-2016 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 PRINTS PR00251 Bacterial opsin signature 201 219 3.8E-26 T 14-09-2016 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 PRINTS PR00251 Bacterial opsin signature 68 89 3.8E-26 T 14-09-2016 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 PRINTS PR00251 Bacterial opsin signature 33 53 3.8E-26 T 14-09-2016 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 Gene3D G3DSA:1.20.1070.10 3 224 9.8E-50 T 14-09-2016 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 SUPERFAMILY SSF81321 4 218 3.05E-41 T 14-09-2016 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 SMART SM01021 4 234 4.6E-37 T 14-09-2016 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 Pfam PF01036 Bacteriorhodopsin-like protein 4 221 2.1E-35 T 14-09-2016 IPR001425 Archaeal/bacterial/fungal rhodopsins GO:0005216|GO:0006811|GO:0016020 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 ProSitePatterns PS00950 Bacterial rhodopsins signature 1. 70 82 - T 14-09-2016 IPR018229 Rhodopsin, retinal binding site GO:0005216|GO:0006811|GO:0016020 PAJ_RS06785 910b4d02b8e296b57f953ffcad1e9ebd 237 ProSitePatterns PS00327 Bacterial rhodopsins retinal binding site. 203 214 - T 14-09-2016 IPR018229 Rhodopsin, retinal binding site GO:0005216|GO:0006811|GO:0016020 PAJ_RS09175 7ea7340b19d1e1d22c0bf11d497c1730 356 Pfam PF13599 Pentapeptide repeats (9 copies) 118 181 3.9E-7 T 14-09-2016 IPR001646 Pentapeptide repeat PAJ_RS09175 7ea7340b19d1e1d22c0bf11d497c1730 356 Pfam PF13599 Pentapeptide repeats (9 copies) 193 259 1.9E-9 T 14-09-2016 IPR001646 Pentapeptide repeat PAJ_RS09175 7ea7340b19d1e1d22c0bf11d497c1730 356 PANTHER PTHR14136:SF0 40 329 2.1E-19 T 14-09-2016 PAJ_RS09175 7ea7340b19d1e1d22c0bf11d497c1730 356 PANTHER PTHR14136 40 329 2.1E-19 T 14-09-2016 PAJ_RS09175 7ea7340b19d1e1d22c0bf11d497c1730 356 SUPERFAMILY SSF141571 158 332 2.55E-31 T 14-09-2016 PAJ_RS09175 7ea7340b19d1e1d22c0bf11d497c1730 356 Pfam PF00805 Pentapeptide repeats (8 copies) 38 76 3.3E-10 T 14-09-2016 IPR001646 Pentapeptide repeat PAJ_RS09175 7ea7340b19d1e1d22c0bf11d497c1730 356 Pfam PF00805 Pentapeptide repeats (8 copies) 277 315 2.9E-5 T 14-09-2016 IPR001646 Pentapeptide repeat PAJ_RS09175 7ea7340b19d1e1d22c0bf11d497c1730 356 SUPERFAMILY SSF141571 12 169 1.37E-30 T 14-09-2016 PAJ_RS10040 5468ceb04c4970ba4158352e8376eb32 235 PANTHER PTHR26402:SF530 8 231 9.5E-122 T 14-09-2016 PAJ_RS10040 5468ceb04c4970ba4158352e8376eb32 235 SMART SM00448 8 118 4.7E-41 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS10040 5468ceb04c4970ba4158352e8376eb32 235 Gene3D G3DSA:1.10.10.10 153 230 7.7E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10040 5468ceb04c4970ba4158352e8376eb32 235 SUPERFAMILY SSF46894 140 229 4.82E-25 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS10040 5468ceb04c4970ba4158352e8376eb32 235 SMART SM00862 151 227 4.3E-26 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS10040 5468ceb04c4970ba4158352e8376eb32 235 Pfam PF00072 Response regulator receiver domain 10 118 7.5E-28 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS10040 5468ceb04c4970ba4158352e8376eb32 235 SUPERFAMILY SSF52172 8 131 7.4E-40 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS10040 5468ceb04c4970ba4158352e8376eb32 235 Gene3D G3DSA:3.40.50.2300 10 152 1.1E-41 T 14-09-2016 PAJ_RS10040 5468ceb04c4970ba4158352e8376eb32 235 PANTHER PTHR26402 8 231 9.5E-122 T 14-09-2016 PAJ_RS10040 5468ceb04c4970ba4158352e8376eb32 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 1.1E-23 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS07075 973501282e0b12ae28b26833e4a778fd 132 Gene3D G3DSA:2.60.120.10 11 128 3.6E-33 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS07075 973501282e0b12ae28b26833e4a778fd 132 SUPERFAMILY SSF51182 10 128 7.34E-30 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS07075 973501282e0b12ae28b26833e4a778fd 132 PANTHER PTHR33570:SF5 2 132 6.3E-48 T 14-09-2016 PAJ_RS07075 973501282e0b12ae28b26833e4a778fd 132 Pfam PF07883 Cupin domain 42 104 2.7E-11 T 14-09-2016 IPR013096 Cupin 2, conserved barrel PAJ_RS07075 973501282e0b12ae28b26833e4a778fd 132 PANTHER PTHR33570 2 132 6.3E-48 T 14-09-2016 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 PANTHER PTHR12815 693 803 0.0 T 14-09-2016 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 PANTHER PTHR12815 5 672 0.0 T 14-09-2016 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 803 2.6E-285 T 14-09-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 803 25.988 T 14-09-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 PIRSF PIRSF006076 1 803 1.1E-255 T 14-09-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 Gene3D G3DSA:2.40.160.50 384 800 2.1E-24 T 14-09-2016 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 Pfam PF07244 Surface antigen variable number repeat 176 263 2.7E-16 T 14-09-2016 IPR010827 Surface antigen variable number GO:0019867 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 Pfam PF07244 Surface antigen variable number repeat 347 421 3.2E-14 T 14-09-2016 IPR010827 Surface antigen variable number GO:0019867 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 Pfam PF07244 Surface antigen variable number repeat 92 172 2.8E-11 T 14-09-2016 IPR010827 Surface antigen variable number GO:0019867 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 Pfam PF07244 Surface antigen variable number repeat 266 344 1.1E-9 T 14-09-2016 IPR010827 Surface antigen variable number GO:0019867 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 PANTHER PTHR12815:SF11 5 672 0.0 T 14-09-2016 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 PANTHER PTHR12815:SF11 693 803 0.0 T 14-09-2016 PAJ_RS00730 b4c6bf12fd234e772f50a3785be7801b 803 Pfam PF01103 Surface antigen 448 803 6.3E-101 T 14-09-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 PAJ_RS15325 c26ec8c7500d4df8979858d1ad226035 131 PANTHER PTHR21011:SF1 1 131 2.6E-50 T 14-09-2016 PAJ_RS15325 c26ec8c7500d4df8979858d1ad226035 131 PANTHER PTHR21011 1 131 2.6E-50 T 14-09-2016 PAJ_RS15325 c26ec8c7500d4df8979858d1ad226035 131 SUPERFAMILY SSF54995 1 103 1.28E-37 T 14-09-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15325 c26ec8c7500d4df8979858d1ad226035 131 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.713 T 14-09-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15325 c26ec8c7500d4df8979858d1ad226035 131 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 14-09-2016 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15325 c26ec8c7500d4df8979858d1ad226035 131 Pfam PF01250 Ribosomal protein S6 3 91 3.3E-27 T 14-09-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15325 c26ec8c7500d4df8979858d1ad226035 131 Gene3D G3DSA:3.30.70.60 1 103 9.2E-42 T 14-09-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 PAJ_RS15325 c26ec8c7500d4df8979858d1ad226035 131 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 1.1E-37 T 14-09-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 PANTHER PTHR11451 7 221 3.6E-111 T 14-09-2016 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 7 270 1.7E-111 T 14-09-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 6 290 39.789 T 14-09-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 Gene3D G3DSA:3.40.50.620 172 220 4.2E-41 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 Gene3D G3DSA:3.40.50.620 6 71 4.2E-41 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 SUPERFAMILY SSF52374 7 284 6.19E-83 T 14-09-2016 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 8 257 9.5E-42 T 14-09-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 PANTHER PTHR11451:SF35 7 221 3.6E-111 T 14-09-2016 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 Gene3D G3DSA:3.90.800.10 72 170 1.6E-13 T 14-09-2016 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 1.6E-14 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 1.6E-14 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 1.6E-14 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 170 180 1.6E-14 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS00575 d948309b6883eae314f3c392f0acfbc3 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 186 194 1.6E-14 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 PIRSF PIRSF006092 1 157 2.5E-43 T 14-09-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 Gene3D G3DSA:1.10.287.180 3 75 2.5E-25 T 14-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 155 8.0E-22 T 14-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 PANTHER PTHR30437 1 155 7.7E-87 T 14-09-2016 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 PANTHER PTHR30437:SF6 1 155 7.7E-87 T 14-09-2016 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 SUPERFAMILY SSF46557 4 78 2.09E-26 T 14-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 Gene3D G3DSA:3.10.50.30 76 155 1.6E-26 T 14-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 156 52.974 T 14-09-2016 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 3 156 1.1E-78 T 14-09-2016 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 27.506 T 14-09-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 3.6E-25 T 14-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 SUPERFAMILY SSF54534 80 155 5.23E-20 T 14-09-2016 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 119 135 - T 14-09-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 PAJ_RS16155 b230c02b3c66760d888d79903fb02fd9 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 14-09-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 PAJ_RS06675 132f965091cb6e675028de04df415299 285 Gene3D G3DSA:3.40.50.10490 99 269 6.2E-36 T 14-09-2016 PAJ_RS06675 132f965091cb6e675028de04df415299 285 SUPERFAMILY SSF46689 9 81 1.67E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06675 132f965091cb6e675028de04df415299 285 PANTHER PTHR30514:SF1 8 274 2.0E-70 T 14-09-2016 PAJ_RS06675 132f965091cb6e675028de04df415299 285 SUPERFAMILY SSF53697 97 279 3.94E-40 T 14-09-2016 PAJ_RS06675 132f965091cb6e675028de04df415299 285 Gene3D G3DSA:1.10.10.10 7 76 3.9E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06675 132f965091cb6e675028de04df415299 285 PANTHER PTHR30514 8 274 2.0E-70 T 14-09-2016 PAJ_RS06675 132f965091cb6e675028de04df415299 285 Pfam PF01380 SIS domain 130 259 5.2E-24 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS06675 132f965091cb6e675028de04df415299 285 Pfam PF01418 Helix-turn-helix domain, rpiR family 10 80 1.3E-17 T 14-09-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PAJ_RS05450 7ed9bc0e3f5995e64d970af9f37b8632 264 Gene3D G3DSA:3.30.420.10 90 246 9.8E-43 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS05450 7ed9bc0e3f5995e64d970af9f37b8632 264 Pfam PF13683 Integrase core domain 181 246 8.2E-27 T 14-09-2016 IPR001584 Integrase, catalytic core GO:0015074 PAJ_RS05450 7ed9bc0e3f5995e64d970af9f37b8632 264 SUPERFAMILY SSF53098 89 251 2.02E-39 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS05450 7ed9bc0e3f5995e64d970af9f37b8632 264 PANTHER PTHR32552 25 250 2.7E-110 T 14-09-2016 PAJ_RS05450 7ed9bc0e3f5995e64d970af9f37b8632 264 PANTHER PTHR32552:SF26 25 250 2.7E-110 T 14-09-2016 PAJ_RS05450 7ed9bc0e3f5995e64d970af9f37b8632 264 Pfam PF13276 HTH-like domain 26 80 8.8E-9 T 14-09-2016 IPR025948 HTH-like domain PAJ_RS15085 e1a93cd3398160f5a9ed56a937c8d251 131 Gene3D G3DSA:3.40.1350.10 24 129 5.6E-35 T 14-09-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 PAJ_RS15085 e1a93cd3398160f5a9ed56a937c8d251 131 SUPERFAMILY SSF52980 17 125 5.47E-18 T 14-09-2016 IPR011335 Restriction endonuclease type II-like PAJ_RS15085 e1a93cd3398160f5a9ed56a937c8d251 131 PANTHER PTHR34039:SF1 12 131 1.1E-38 T 14-09-2016 PAJ_RS15085 e1a93cd3398160f5a9ed56a937c8d251 131 Hamap MF_00048 UPF0102 protein YraN [yraN]. 16 128 23.342 T 14-09-2016 IPR003509 Uncharacterised protein family UPF0102 PAJ_RS15085 e1a93cd3398160f5a9ed56a937c8d251 131 PANTHER PTHR34039 12 131 1.1E-38 T 14-09-2016 PAJ_RS15085 e1a93cd3398160f5a9ed56a937c8d251 131 Pfam PF02021 Uncharacterised protein family UPF0102 24 115 3.5E-25 T 14-09-2016 IPR003509 Uncharacterised protein family UPF0102 PAJ_RS15085 e1a93cd3398160f5a9ed56a937c8d251 131 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 15 129 2.8E-41 T 14-09-2016 IPR003509 Uncharacterised protein family UPF0102 PAJ_RS03070 fc99dfa6b63142c2d03a876a40eb7657 604 Pfam PF00723 Glycosyl hydrolases family 15 222 554 8.4E-47 T 14-09-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 PAJ_RS03070 fc99dfa6b63142c2d03a876a40eb7657 604 PANTHER PTHR31616:SF0 8 604 9.0E-156 T 14-09-2016 PAJ_RS03070 fc99dfa6b63142c2d03a876a40eb7657 604 Gene3D G3DSA:1.50.10.10 216 598 2.1E-88 T 14-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 PAJ_RS03070 fc99dfa6b63142c2d03a876a40eb7657 604 PANTHER PTHR31616 8 604 9.0E-156 T 14-09-2016 PAJ_RS03070 fc99dfa6b63142c2d03a876a40eb7657 604 SUPERFAMILY SSF48208 199 595 3.91E-93 T 14-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 PAJ_RS08720 a4aa54b2750eed2de19ad47a952b4662 177 SUPERFAMILY SSF51182 2 176 1.45E-72 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS08720 a4aa54b2750eed2de19ad47a952b4662 177 PANTHER PTHR21047 5 177 1.1E-71 T 14-09-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PAJ_RS08720 a4aa54b2750eed2de19ad47a952b4662 177 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 174 2.1E-72 T 14-09-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PAJ_RS08720 a4aa54b2750eed2de19ad47a952b4662 177 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 176 8.4E-77 T 14-09-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PAJ_RS08720 a4aa54b2750eed2de19ad47a952b4662 177 Gene3D G3DSA:2.60.120.10 2 176 1.3E-80 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS08720 a4aa54b2750eed2de19ad47a952b4662 177 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 170 6.0E-71 T 14-09-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 1 563 36.979 T 14-09-2016 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 SUPERFAMILY SSF55681 108 287 3.45E-105 T 14-09-2016 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 SUPERFAMILY SSF55681 420 584 3.45E-105 T 14-09-2016 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 558 2.9E-107 T 14-09-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 1.2E-26 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 1.2E-26 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 1.2E-26 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 1.2E-26 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 SUPERFAMILY SSF50249 1 105 1.33E-32 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 Gene3D G3DSA:2.40.50.140 1 107 2.0E-38 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 Pfam PF01336 OB-fold nucleic acid binding domain 18 100 7.2E-15 T 14-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 PANTHER PTHR22594:SF5 370 571 1.1E-251 T 14-09-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 PANTHER PTHR22594:SF5 1 296 1.1E-251 T 14-09-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 SUPERFAMILY SSF55261 288 419 2.01E-45 T 14-09-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 Pfam PF02938 GAD domain 307 406 4.7E-32 T 14-09-2016 IPR029351 GAD domain PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 PANTHER PTHR22594 370 571 1.1E-251 T 14-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 PANTHER PTHR22594 1 296 1.1E-251 T 14-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 Gene3D G3DSA:3.30.930.10 131 275 2.1E-112 T 14-09-2016 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 Gene3D G3DSA:3.30.930.10 415 585 2.1E-112 T 14-09-2016 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 Gene3D G3DSA:3.30.1360.30 276 414 4.2E-48 T 14-09-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 PAJ_RS08400 3a3f3304e0487b1f188343f0a4ace1cd 592 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 586 8.0E-273 T 14-09-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 253 269 8.9E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 253 8.9E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 SUPERFAMILY SSF46689 170 220 1.25E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 Gene3D G3DSA:2.60.120.10 1 77 6.4E-12 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 SUPERFAMILY SSF51182 4 92 2.58E-9 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 Gene3D G3DSA:1.10.10.60 223 271 2.2E-17 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 PANTHER PTHR11019 1 273 4.8E-140 T 14-09-2016 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 SUPERFAMILY SSF46689 222 272 6.72E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 223 265 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 Gene3D G3DSA:1.10.10.60 166 222 2.5E-16 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 Pfam PF12833 Helix-turn-helix domain 192 270 1.3E-24 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 SMART SM00342 186 269 1.2E-26 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 Pfam PF02311 AraC-like ligand binding domain 18 148 2.1E-17 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS09650 b1693b7570a6fb36e79fc2d3f1198b7d 273 PANTHER PTHR11019:SF86 1 273 4.8E-140 T 14-09-2016 PAJ_RS03870 5ba0876cf0b19d43b1e0859d807258c8 137 PANTHER PTHR33303 1 135 2.0E-55 T 14-09-2016 PAJ_RS03870 5ba0876cf0b19d43b1e0859d807258c8 137 Gene3D G3DSA:3.40.50.720 2 134 1.8E-49 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS03870 5ba0876cf0b19d43b1e0859d807258c8 137 Pfam PF13380 CoA binding domain 14 130 3.2E-38 T 14-09-2016 IPR003781 CoA-binding GO:0048037 PAJ_RS03870 5ba0876cf0b19d43b1e0859d807258c8 137 SUPERFAMILY SSF51735 2 135 2.71E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS03870 5ba0876cf0b19d43b1e0859d807258c8 137 SMART SM00881 10 104 9.1E-24 T 14-09-2016 IPR003781 CoA-binding GO:0048037 PAJ_RS15310 0f8b6b2309ddfbd56b86b149a38c1121 149 Gene3D G3DSA:3.40.5.10 1 52 2.5E-25 T 14-09-2016 IPR020070 Ribosomal protein L9, N-terminal PAJ_RS15310 0f8b6b2309ddfbd56b86b149a38c1121 149 SUPERFAMILY SSF55658 1 57 4.01E-19 T 14-09-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal PAJ_RS15310 0f8b6b2309ddfbd56b86b149a38c1121 149 Gene3D G3DSA:3.10.430.100 62 148 1.9E-27 T 14-09-2016 IPR020069 Ribosomal protein L9, C-terminal PAJ_RS15310 0f8b6b2309ddfbd56b86b149a38c1121 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 148 7.5E-25 T 14-09-2016 IPR020069 Ribosomal protein L9, C-terminal PAJ_RS15310 0f8b6b2309ddfbd56b86b149a38c1121 149 SUPERFAMILY SSF55653 61 148 1.24E-24 T 14-09-2016 IPR020069 Ribosomal protein L9, C-terminal PAJ_RS15310 0f8b6b2309ddfbd56b86b149a38c1121 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 148 4.5E-58 T 14-09-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15310 0f8b6b2309ddfbd56b86b149a38c1121 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 3.8E-22 T 14-09-2016 IPR020070 Ribosomal protein L9, N-terminal PAJ_RS15310 0f8b6b2309ddfbd56b86b149a38c1121 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 24.987 T 14-09-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15310 0f8b6b2309ddfbd56b86b149a38c1121 149 PANTHER PTHR21368 1 148 6.3E-52 T 14-09-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15310 0f8b6b2309ddfbd56b86b149a38c1121 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 14-09-2016 IPR020070 Ribosomal protein L9, N-terminal PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 546 553 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 322 329 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 SUPERFAMILY SSF69349 586 730 9.42E-26 T 14-09-2016 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 SUPERFAMILY SSF69349 145 252 2.59E-14 T 14-09-2016 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 994 1001 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 674 681 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 898 905 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 226 233 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 450 457 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 SUPERFAMILY SSF69349 1138 1312 6.91E-27 T 14-09-2016 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 498 505 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 946 953 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 274 281 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 SUPERFAMILY SSF69349 682 830 3.06E-25 T 14-09-2016 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 802 809 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1026 1033 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 354 361 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 578 585 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 SUPERFAMILY SSF69349 1008 1143 1.26E-26 T 14-09-2016 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 850 857 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1074 1081 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 178 185 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 402 409 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 SUPERFAMILY SSF69349 859 972 1.84E-23 T 14-09-2016 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 930 937 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 706 713 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 754 761 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 978 985 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 306 313 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 530 537 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 658 665 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 882 889 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 434 441 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 210 217 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 SUPERFAMILY SSF69349 479 613 1.53E-26 T 14-09-2016 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 258 265 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 SUPERFAMILY SSF69349 333 469 7.38E-26 T 14-09-2016 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1106 1113 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 562 569 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 786 793 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 338 345 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 834 841 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 610 617 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 386 393 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 323 337 1.8E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 419 433 1.8E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 371 385 1.8E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 579 593 1.6E-4 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 531 545 1.6E-4 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 483 497 1.6E-4 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 803 817 1.0E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 995 1009 6.8E-6 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 947 961 1.0E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 275 289 1.8E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 851 865 6.8E-6 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 659 673 8.1E-6 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 899 913 6.8E-6 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 259 273 1.0E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 515 529 8.1E-6 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 963 977 8.1E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 1043 1057 1.8E-4 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 707 721 1.0E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 755 769 2.7E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 563 577 8.1E-6 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 355 369 1.0E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 723 737 1.6E-4 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 675 689 1.6E-4 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 627 641 1.6E-4 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 611 625 2.7E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 819 833 1.6E-4 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 771 785 1.6E-4 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 Pfam PF00818 Ice nucleation protein repeat 467 481 2.7E-5 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 690 697 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 466 473 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 242 249 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 738 745 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 290 297 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 514 521 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 PRINTS PR00327 Ice nucleation protein signature 527 548 2.3E-30 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 PRINTS PR00327 Ice nucleation protein signature 240 254 2.3E-30 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 PRINTS PR00327 Ice nucleation protein signature 18 35 2.3E-30 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 PRINTS PR00327 Ice nucleation protein signature 58 77 2.3E-30 T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 594 601 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 370 377 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1090 1097 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 SUPERFAMILY SSF69349 231 355 6.28E-26 T 14-09-2016 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 418 425 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 642 649 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS20595 6598fa7dbca655148aa5881274e232d2 1354 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 194 201 - T 14-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:3.40.50.300 2 51 9.9E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:3.40.50.300 613 692 6.1E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:3.40.50.300 821 938 6.1E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:3.40.50.300 478 597 9.9E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 925 0.0 T 14-09-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:1.20.1580.10 694 820 9.5E-55 T 14-09-2016 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:3.30.1490.20 200 249 7.6E-28 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:3.30.1490.20 130 153 7.6E-28 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 23.082 T 14-09-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 PANTHER PTHR32282 1 942 0.0 T 14-09-2016 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 PANTHER PTHR32282:SF2 1 942 0.0 T 14-09-2016 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 SUPERFAMILY SSF52540 613 911 7.64E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Pfam PF00005 ABC transporter 806 860 1.2E-5 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 SUPERFAMILY SSF52540 4 204 5.92E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 SUPERFAMILY SSF52540 430 569 5.92E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:1.10.8.280 286 406 8.0E-43 T 14-09-2016 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:1.20.1580.10 251 284 1.3E-53 T 14-09-2016 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:1.20.1580.10 91 129 1.3E-53 T 14-09-2016 PAJ_RS18995 122b608141c717c4ee044d35342ba59f 942 Gene3D G3DSA:1.20.1580.10 407 477 1.3E-53 T 14-09-2016 PAJ_RS11640 4722a5bf2e624fe144363ecdf73596f0 235 Hamap MF_01158 DnaA regulatory inactivator Hda [hda]. 7 235 57.602 T 14-09-2016 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae PAJ_RS11640 4722a5bf2e624fe144363ecdf73596f0 235 Pfam PF00308 Bacterial dnaA protein 18 214 6.1E-18 T 14-09-2016 IPR013317 Chromosomal replication initiator protein DnaA PAJ_RS11640 4722a5bf2e624fe144363ecdf73596f0 235 SUPERFAMILY SSF52540 20 213 6.48E-22 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11640 4722a5bf2e624fe144363ecdf73596f0 235 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 8 233 7.3E-81 T 14-09-2016 IPR017788 DnaA regulatory inactivator Hda GO:0032297 PAJ_RS11640 4722a5bf2e624fe144363ecdf73596f0 235 Gene3D G3DSA:3.40.50.300 4 166 3.2E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11640 4722a5bf2e624fe144363ecdf73596f0 235 PANTHER PTHR30050:SF5 6 233 5.9E-117 T 14-09-2016 PAJ_RS11640 4722a5bf2e624fe144363ecdf73596f0 235 PANTHER PTHR30050 6 233 5.9E-117 T 14-09-2016 PAJ_RS11640 4722a5bf2e624fe144363ecdf73596f0 235 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 133 160 1.0E-6 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PAJ_RS11640 4722a5bf2e624fe144363ecdf73596f0 235 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 45 65 1.0E-6 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PAJ_RS11640 4722a5bf2e624fe144363ecdf73596f0 235 Gene3D G3DSA:1.10.8.60 169 234 3.3E-30 T 14-09-2016 PAJ_RS00995 9ea00e812286d84da1327fb5f076ccbe 465 PANTHER PTHR11895 1 461 1.9E-227 T 14-09-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS00995 9ea00e812286d84da1327fb5f076ccbe 465 TIGRFAM TIGR02715 amido_AtzE: amidohydrolase, AtzE family 9 455 4.5E-208 T 14-09-2016 IPR014087 Amidohydrolase, AtzE type KEGG: 00791+3.5.1.84|MetaCyc: PWY-5169|UniPathway: UPA00008 PAJ_RS00995 9ea00e812286d84da1327fb5f076ccbe 465 PANTHER PTHR11895:SF74 1 461 1.9E-227 T 14-09-2016 PAJ_RS00995 9ea00e812286d84da1327fb5f076ccbe 465 Gene3D G3DSA:3.90.1300.10 3 453 1.4E-132 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS00995 9ea00e812286d84da1327fb5f076ccbe 465 SUPERFAMILY SSF75304 3 452 1.09E-127 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS00995 9ea00e812286d84da1327fb5f076ccbe 465 Pfam PF01425 Amidase 24 444 2.1E-98 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 SUPERFAMILY SSF116726 291 374 2.75E-10 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 391 541 4.8E-44 T 14-09-2016 IPR006512 YidE/YbjL duplication PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 168 4.4E-39 T 14-09-2016 IPR006512 YidE/YbjL duplication PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 Gene3D G3DSA:3.30.70.1450 230 285 8.6E-7 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 Gene3D G3DSA:3.30.70.1450 303 375 6.1E-5 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 SUPERFAMILY SSF116726 230 283 9.68E-10 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 Pfam PF02080 TrkA-C domain 305 371 3.7E-7 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 Pfam PF02080 TrkA-C domain 230 284 5.0E-7 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 PANTHER PTHR30445:SF4 3 558 0.0 T 14-09-2016 PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 Pfam PF06826 Predicted Permease Membrane Region 17 180 2.7E-40 T 14-09-2016 IPR006512 YidE/YbjL duplication PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 Pfam PF06826 Predicted Permease Membrane Region 385 554 3.4E-42 T 14-09-2016 IPR006512 YidE/YbjL duplication PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 557 56.341 T 14-09-2016 IPR023017 Transport protein YbjL, putative PAJ_RS03405 f715989753a436ff30f5f8163c515fdf 562 PANTHER PTHR30445 3 558 0.0 T 14-09-2016 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 185 7.0E-57 T 14-09-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 SMART SM00984 323 419 1.9E-19 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 SUPERFAMILY SSF48179 205 298 9.69E-28 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 SUPERFAMILY SSF52413 309 418 3.14E-24 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 Gene3D G3DSA:3.40.50.720 3 226 1.9E-62 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 SUPERFAMILY SSF51735 5 197 1.35E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 Hamap MF_02029 UDP-N-acetyl-D-mannosamine dehydrogenase [wecC]. 1 419 70.803 T 14-09-2016 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC GO:0009246|GO:0089714 KEGG: 00520+1.1.1.336|MetaCyc: PWY-7335|UniPathway: UPA00566 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 PANTHER PTHR11374:SF4 1 419 1.0E-188 T 14-09-2016 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 PIRSF PIRSF000124 4 418 6.9E-72 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 PIRSF PIRSF500136 1 419 2.7E-145 T 14-09-2016 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 PANTHER PTHR11374 1 419 1.0E-188 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 323 418 1.6E-17 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 205 292 2.4E-25 T 14-09-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 414 2.0E-116 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PAJ_RS18295 95a6b15f339d6075aa6a30b0ea6b1dcf 419 Gene3D G3DSA:3.40.50.720 237 418 6.6E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06870 82e1367fd425aefed8cb6aef10179374 337 PANTHER PTHR11019 241 335 4.4E-19 T 14-09-2016 PAJ_RS06870 82e1367fd425aefed8cb6aef10179374 337 Pfam PF12833 Helix-turn-helix domain 250 328 1.9E-17 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS06870 82e1367fd425aefed8cb6aef10179374 337 PANTHER PTHR11019:SF11 241 335 4.4E-19 T 14-09-2016 PAJ_RS06870 82e1367fd425aefed8cb6aef10179374 337 Gene3D G3DSA:1.10.10.60 281 330 1.1E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06870 82e1367fd425aefed8cb6aef10179374 337 SUPERFAMILY SSF46689 280 330 5.82E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06870 82e1367fd425aefed8cb6aef10179374 337 SMART SM00342 244 327 5.7E-14 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS14485 1a2d55d340f084d3606a4a9a36cf0ab4 156 PANTHER PTHR30505:SF5 1 149 1.4E-37 T 14-09-2016 PAJ_RS14485 1a2d55d340f084d3606a4a9a36cf0ab4 156 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 149 1.1E-34 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS14485 1a2d55d340f084d3606a4a9a36cf0ab4 156 Gene3D G3DSA:3.40.930.10 1 150 1.1E-45 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS14485 1a2d55d340f084d3606a4a9a36cf0ab4 156 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 10 134 3.6E-38 T 14-09-2016 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS14485 1a2d55d340f084d3606a4a9a36cf0ab4 156 PANTHER PTHR30505 1 149 1.4E-37 T 14-09-2016 PAJ_RS14485 1a2d55d340f084d3606a4a9a36cf0ab4 156 SUPERFAMILY SSF55804 1 149 2.22E-35 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS17160 d35be83422479e02c183ef5288226a57 157 PANTHER PTHR12029:SF31 1 157 8.2E-81 T 14-09-2016 PAJ_RS17160 d35be83422479e02c183ef5288226a57 157 PANTHER PTHR12029 1 157 8.2E-81 T 14-09-2016 PAJ_RS17160 d35be83422479e02c183ef5288226a57 157 Gene3D G3DSA:3.40.1280.10 1 153 2.4E-69 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PAJ_RS17160 d35be83422479e02c183ef5288226a57 157 PIRSF PIRSF029256 1 154 2.5E-70 T 14-09-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PAJ_RS17160 d35be83422479e02c183ef5288226a57 157 SUPERFAMILY SSF75217 1 152 3.14E-44 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases PAJ_RS17160 d35be83422479e02c183ef5288226a57 157 Pfam PF00588 SpoU rRNA Methylase family 2 142 4.4E-33 T 14-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 PAJ_RS17160 d35be83422479e02c183ef5288226a57 157 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 152 3.8E-71 T 14-09-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PAJ_RS17160 d35be83422479e02c183ef5288226a57 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 34.198 T 14-09-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 Gene3D G3DSA:3.40.50.450 1 208 2.3E-43 T 14-09-2016 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PANTHER PTHR13697 1 313 2.3E-28 T 14-09-2016 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PANTHER PTHR13697:SF2 1 313 2.3E-28 T 14-09-2016 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 Pfam PF00365 Phosphofructokinase 2 280 5.4E-55 T 14-09-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 173 190 1.0E-33 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 116 133 1.0E-33 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 89 105 1.0E-33 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 155 171 1.0E-33 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 134 152 1.0E-33 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 208 220 1.0E-33 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 244 266 1.0E-33 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 5 24 1.0E-33 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 SUPERFAMILY SSF53784 1 323 1.7E-66 T 14-09-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS06590 96dd8495110e951de86b3c084e5f057d 326 PIRSF PIRSF000532 1 326 2.0E-61 T 14-09-2016 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 Gene3D G3DSA:2.70.210.12 2 154 1.5E-60 T 14-09-2016 IPR006169 GTP1/OBG domain GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 SUPERFAMILY SSF52540 152 344 3.14E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 PANTHER PTHR11702 1 378 7.0E-199 T 14-09-2016 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 PANTHER PTHR11702:SF3 1 378 7.0E-199 T 14-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 SUPERFAMILY SSF82051 2 157 8.5E-57 T 14-09-2016 IPR006169 GTP1/OBG domain GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 Pfam PF01018 GTP1/OBG 3 157 5.3E-61 T 14-09-2016 IPR006169 GTP1/OBG domain GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 Gene3D G3DSA:3.40.50.300 155 343 3.2E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.261 T 14-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 PIRSF PIRSF002401 1 377 2.1E-141 T 14-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 14-09-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 2.7E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 2.7E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 2.7E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 2.7E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 1.9E-148 T 14-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 PAJ_RS19835 8b7fd753ce8bbb45a31976cfc4449de7 390 Pfam PF01926 50S ribosome-binding GTPase 162 284 9.3E-23 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS05920 7ecf5dad1abb9b9ad8f25aa0ab9bd378 457 PANTHER PTHR11206:SF153 2 457 1.8E-217 T 14-09-2016 PAJ_RS05920 7ecf5dad1abb9b9ad8f25aa0ab9bd378 457 PANTHER PTHR11206 2 457 1.8E-217 T 14-09-2016 PAJ_RS05920 7ecf5dad1abb9b9ad8f25aa0ab9bd378 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 422 1.7E-117 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS05920 7ecf5dad1abb9b9ad8f25aa0ab9bd378 457 PIRSF PIRSF006603 2 449 4.6E-58 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS05920 7ecf5dad1abb9b9ad8f25aa0ab9bd378 457 Pfam PF01554 MatE 17 177 1.7E-38 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS05920 7ecf5dad1abb9b9ad8f25aa0ab9bd378 457 Pfam PF01554 MatE 244 405 3.3E-36 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS05920 7ecf5dad1abb9b9ad8f25aa0ab9bd378 457 Hamap MF_00400 Multidrug resistance protein MdtK [mdtK]. 1 457 48.89 T 14-09-2016 IPR022913 Multidrug resistance protein MdtK PAJ_RS02070 0bc188d47b0f4755c5e249fa923dd548 303 SUPERFAMILY SSF53448 1 239 7.31E-32 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS02070 0bc188d47b0f4755c5e249fa923dd548 303 Gene3D G3DSA:3.90.550.10 1 160 1.1E-20 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS02070 0bc188d47b0f4755c5e249fa923dd548 303 PANTHER PTHR10859 1 302 4.1E-171 T 14-09-2016 PAJ_RS02070 0bc188d47b0f4755c5e249fa923dd548 303 PANTHER PTHR10859:SF81 1 302 4.1E-171 T 14-09-2016 PAJ_RS02070 0bc188d47b0f4755c5e249fa923dd548 303 Pfam PF00535 Glycosyl transferase family 2 4 166 5.5E-28 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 Pfam PF08544 GHMP kinases C terminal 206 259 3.1E-6 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 2 283 8.0E-101 T 14-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 Gene3D G3DSA:3.30.230.10 4 162 1.8E-52 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 PANTHER PTHR20861:SF2 1 281 2.4E-93 T 14-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 PIRSF PIRSF010376 1 283 2.2E-82 T 14-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 275 31.949 T 14-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 Pfam PF00288 GHMP kinases N terminal domain 91 148 3.4E-10 T 14-09-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 SUPERFAMILY SSF55060 165 281 1.63E-35 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 SUPERFAMILY SSF54211 1 161 2.35E-46 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 Gene3D G3DSA:3.30.70.890 167 282 8.8E-42 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain PAJ_RS05485 14d7ccc213a5a9028ac2a86e160c0538 285 PANTHER PTHR20861 1 281 2.4E-93 T 14-09-2016 PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 Gene3D G3DSA:3.40.50.1220 194 340 9.2E-39 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 SUPERFAMILY SSF52467 168 344 6.16E-40 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 5 627 1.1E-272 T 14-09-2016 IPR030817 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22|UniPathway: UPA00076 PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 PANTHER PTHR18968:SF9 3 629 0.0 T 14-09-2016 IPR030817 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22|UniPathway: UPA00076 PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 Gene3D G3DSA:3.40.50.970 3 190 2.4E-47 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 Gene3D G3DSA:3.40.50.970 399 601 2.0E-56 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 203 336 1.8E-30 T 14-09-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 PANTHER PTHR18968 3 629 0.0 T 14-09-2016 PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 SUPERFAMILY SSF52518 403 608 4.83E-52 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 SUPERFAMILY SSF52518 2 191 2.4E-28 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 425 584 1.1E-39 T 14-09-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 461 480 - T 14-09-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PAJ_RS16420 49ba072569c66122fbd8205c0d18c790 629 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 179 3.0E-29 T 14-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PAJ_RS10265 69ac0dc8ef799c10342ccba9506c4be0 460 Pfam PF00083 Sugar (and other) transporter 68 458 8.5E-49 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS10265 69ac0dc8ef799c10342ccba9506c4be0 460 ProSitePatterns PS00217 Sugar transport proteins signature 2. 130 155 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS10265 69ac0dc8ef799c10342ccba9506c4be0 460 Gene3D G3DSA:1.20.1250.20 271 456 1.1E-23 T 14-09-2016 PAJ_RS10265 69ac0dc8ef799c10342ccba9506c4be0 460 Gene3D G3DSA:1.20.1250.20 37 218 1.6E-35 T 14-09-2016 PAJ_RS10265 69ac0dc8ef799c10342ccba9506c4be0 460 SUPERFAMILY SSF103473 14 457 3.27E-82 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS10265 69ac0dc8ef799c10342ccba9506c4be0 460 PANTHER PTHR24064 35 459 3.2E-81 T 14-09-2016 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 Pfam PF03453 MoeA N-terminal region (domain I and II) 9 169 1.5E-36 T 14-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 Gene3D G3DSA:3.40.980.10 165 329 1.4E-65 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 PANTHER PTHR10192:SF11 4 411 9.7E-228 T 14-09-2016 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 255 288 - T 14-09-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 178 315 1.2E-33 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 Gene3D G3DSA:3.90.105.10 133 164 8.7E-21 T 14-09-2016 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 SUPERFAMILY SSF63882 8 178 1.7E-55 T 14-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 Gene3D G3DSA:2.170.190.11 52 132 1.9E-33 T 14-09-2016 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 PANTHER PTHR10192 4 411 9.7E-228 T 14-09-2016 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 Gene3D G3DSA:2.40.340.10 330 403 3.0E-32 T 14-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 SUPERFAMILY SSF53218 179 323 2.09E-44 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 SUPERFAMILY SSF63867 329 409 3.27E-24 T 14-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 Pfam PF03454 MoeA C-terminal region (domain IV) 333 405 5.8E-21 T 14-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 Pfam PF00994 Probable molybdopterin binding domain 182 317 2.9E-28 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS03340 8ac626c8df914298ea4af99148b7c084 411 SMART SM00852 182 319 6.7E-45 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 Gene3D G3DSA:3.40.50.1270 176 371 1.5E-73 T 14-09-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 SUPERFAMILY SSF53748 3 383 8.95E-138 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PANTHER PTHR11406 1 387 1.5E-183 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 Gene3D G3DSA:3.40.50.1260 5 175 2.5E-64 T 14-09-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PIRSF PIRSF000724 1 387 6.1E-127 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PRINTS PR00477 Phosphoglycerate kinase family signature 164 186 8.9E-83 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 8.9E-83 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PRINTS PR00477 Phosphoglycerate kinase family signature 105 120 8.9E-83 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 8.9E-83 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 8.9E-83 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 8.9E-83 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 8.9E-83 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PRINTS PR00477 Phosphoglycerate kinase family signature 133 155 8.9E-83 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 PRINTS PR00477 Phosphoglycerate kinase family signature 187 206 8.9E-83 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 37.794 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 14-09-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS13400 4c3ed8e7147891a2b39ebd369dc10ca0 387 Pfam PF00162 Phosphoglycerate kinase 6 373 1.6E-130 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PAJ_RS10525 212dece0bacc64e0cfe2f3cb772dd723 242 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 234 7.9E-90 T 14-09-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 PAJ_RS10525 212dece0bacc64e0cfe2f3cb772dd723 242 PANTHER PTHR10108:SF910 9 237 1.4E-161 T 14-09-2016 PAJ_RS10525 212dece0bacc64e0cfe2f3cb772dd723 242 Pfam PF13489 Methyltransferase domain 57 186 1.2E-23 T 14-09-2016 PAJ_RS10525 212dece0bacc64e0cfe2f3cb772dd723 242 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 14 240 38.509 T 14-09-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 PAJ_RS10525 212dece0bacc64e0cfe2f3cb772dd723 242 Gene3D G3DSA:3.40.50.150 28 223 6.5E-45 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS10525 212dece0bacc64e0cfe2f3cb772dd723 242 PANTHER PTHR10108 9 237 1.4E-161 T 14-09-2016 PAJ_RS10525 212dece0bacc64e0cfe2f3cb772dd723 242 SUPERFAMILY SSF53335 18 227 8.44E-45 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS10145 d8a32a8659ca4606cc277a71cd874fd4 336 PANTHER PTHR32196:SF18 6 336 2.1E-225 T 14-09-2016 IPR030158 Galactoside transport system permease protein MglC GO:0008643|GO:0016021 PAJ_RS10145 d8a32a8659ca4606cc277a71cd874fd4 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 325 1.0E-49 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS10145 d8a32a8659ca4606cc277a71cd874fd4 336 PANTHER PTHR32196 6 336 2.1E-225 T 14-09-2016 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 PANTHER PTHR10066:SF72 595 1024 0.0 T 14-09-2016 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 SUPERFAMILY SSF49785 15 219 3.4E-67 T 14-09-2016 IPR008979 Galactose-binding domain-like PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Pfam PF00703 Glycosyl hydrolases family 2 222 334 8.0E-15 T 14-09-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 SUPERFAMILY SSF49303 222 334 8.63E-26 T 14-09-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Gene3D G3DSA:2.70.98.10 739 1024 2.3E-87 T 14-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 SUPERFAMILY SSF49303 622 728 2.01E-28 T 14-09-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 SMART SM01038 752 1025 1.6E-118 T 14-09-2016 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 PANTHER PTHR10066 5 577 0.0 T 14-09-2016 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 53 219 2.7E-67 T 14-09-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 SUPERFAMILY SSF51445 336 625 3.38E-102 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 448 462 - T 14-09-2016 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 SUPERFAMILY SSF74650 739 1024 2.2E-94 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Gene3D G3DSA:2.60.120.260 9 208 5.6E-85 T 14-09-2016 IPR008979 Galactose-binding domain-like PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Gene3D G3DSA:3.20.20.80 336 624 1.8E-114 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Gene3D G3DSA:2.60.40.320 626 728 2.2E-32 T 14-09-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Hamap MF_01687 Beta-galactosidase [lacZ]. 6 1027 17.44 T 14-09-2016 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 PANTHER PTHR10066 595 1024 0.0 T 14-09-2016 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 386 411 - T 14-09-2016 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Gene3D G3DSA:2.60.40.320 209 334 9.8E-32 T 14-09-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Pfam PF16353 Domain of unknown function(DUF4981) 640 726 1.6E-18 T 14-09-2016 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 PANTHER PTHR10066:SF72 5 577 0.0 T 14-09-2016 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Pfam PF02929 Beta galactosidase small chain 756 1023 3.8E-60 T 14-09-2016 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 336 629 2.5E-118 T 14-09-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 PRINTS PR00132 Glycosyl hydrolase family 2 signature 448 463 2.4E-37 T 14-09-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 PRINTS PR00132 Glycosyl hydrolase family 2 signature 345 359 2.4E-37 T 14-09-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 PRINTS PR00132 Glycosyl hydrolase family 2 signature 376 394 2.4E-37 T 14-09-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 PRINTS PR00132 Glycosyl hydrolase family 2 signature 532 547 2.4E-37 T 14-09-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19285 40f33e55355b38678358eee92819e83b 1028 PRINTS PR00132 Glycosyl hydrolase family 2 signature 147 162 2.4E-37 T 14-09-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PAJ_RS19330 ebcbb9c71dbbc44638939762e5f994fa 427 Pfam PF00753 Metallo-beta-lactamase superfamily 158 346 2.4E-22 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS19330 ebcbb9c71dbbc44638939762e5f994fa 427 PANTHER PTHR11935:SF110 113 422 4.5E-76 T 14-09-2016 PAJ_RS19330 ebcbb9c71dbbc44638939762e5f994fa 427 PANTHER PTHR11935 113 422 4.5E-76 T 14-09-2016 PAJ_RS19330 ebcbb9c71dbbc44638939762e5f994fa 427 SUPERFAMILY SSF56281 151 426 6.91E-43 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS19330 ebcbb9c71dbbc44638939762e5f994fa 427 SUPERFAMILY SSF52799 9 98 3.89E-7 T 14-09-2016 IPR029021 Protein-tyrosine phosphatase-like PAJ_RS19330 ebcbb9c71dbbc44638939762e5f994fa 427 SMART SM00849 157 346 2.8E-20 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS19330 ebcbb9c71dbbc44638939762e5f994fa 427 Pfam PF04273 Putative phosphatase (DUF442) 3 107 1.9E-20 T 14-09-2016 IPR005939 Beta-lactamase hydrolase-like GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- PAJ_RS19330 ebcbb9c71dbbc44638939762e5f994fa 427 Gene3D G3DSA:3.60.15.10 150 377 4.2E-45 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS19330 ebcbb9c71dbbc44638939762e5f994fa 427 Gene3D G3DSA:3.90.190.10 1 135 5.6E-31 T 14-09-2016 IPR029021 Protein-tyrosine phosphatase-like PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 SMART SM00490 491 588 2.6E-8 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 TIGRFAM TIGR00595 priA: primosomal protein N' 220 728 3.4E-198 T 14-09-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 PANTHER PTHR30580 1 730 4.9E-284 T 14-09-2016 PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 SMART SM00487 194 390 1.8E-13 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 Pfam PF00271 Helicase conserved C-terminal domain 521 588 6.1E-5 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 SUPERFAMILY SSF52540 502 600 6.46E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 SUPERFAMILY SSF52540 219 439 6.46E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 Pfam PF04851 Type III restriction enzyme, res subunit 198 358 1.3E-11 T 14-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 Gene3D G3DSA:3.40.50.300 197 376 1.9E-35 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 731 25.455 T 14-09-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 PAJ_RS17045 0e3f158401d5347145d247c00eb38264 731 Gene3D G3DSA:3.40.50.300 455 629 4.6E-28 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 PANTHER PTHR24567 1 207 1.3E-156 T 14-09-2016 PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 8.8E-11 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 8.8E-11 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 Gene3D G3DSA:2.60.120.10 6 143 9.0E-45 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 6.4E-24 T 14-09-2016 IPR000595 Cyclic nucleotide-binding domain PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 1.7E-15 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 PANTHER PTHR24567:SF27 1 207 1.3E-156 T 14-09-2016 PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 14-09-2016 IPR018488 Cyclic nucleotide-binding, conserved site PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 14-09-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 Gene3D G3DSA:1.10.10.10 144 207 1.1E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 SUPERFAMILY SSF46785 139 207 3.64E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 SMART SM00419 160 208 4.5E-17 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 SUPERFAMILY SSF51206 8 136 1.03E-35 T 14-09-2016 IPR018490 Cyclic nucleotide-binding-like PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 14-09-2016 IPR018488 Cyclic nucleotide-binding, conserved site PAJ_RS16005 c9b73d94c2816acb50d358a803904515 210 SMART SM00100 2 122 1.1E-26 T 14-09-2016 IPR000595 Cyclic nucleotide-binding domain PAJ_RS17295 2bb0e16f37037a0d8bb928125355111c 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 4.4E-27 T 14-09-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17295 2bb0e16f37037a0d8bb928125355111c 78 SUPERFAMILY SSF143800 2 77 4.32E-30 T 14-09-2016 PAJ_RS17295 2bb0e16f37037a0d8bb928125355111c 78 PANTHER PTHR13528 1 74 8.9E-34 T 14-09-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 PAJ_RS17295 2bb0e16f37037a0d8bb928125355111c 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 20.864 T 14-09-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17295 2bb0e16f37037a0d8bb928125355111c 78 Gene3D G3DSA:2.30.170.40 2 77 6.0E-36 T 14-09-2016 PAJ_RS17295 2bb0e16f37037a0d8bb928125355111c 78 Pfam PF00830 Ribosomal L28 family 3 62 1.3E-25 T 14-09-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 Gene3D G3DSA:3.20.20.120 130 425 7.0E-116 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 Gene3D G3DSA:3.30.390.10 6 126 2.9E-49 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 Pfam PF03952 Enolase, N-terminal domain 6 135 1.7E-53 T 14-09-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 SUPERFAMILY SSF54826 5 139 8.25E-51 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 SUPERFAMILY SSF51604 141 426 7.5E-109 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 Hamap MF_00318 Enolase [eno]. 3 413 40.939 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 PIRSF PIRSF001400 1 427 2.5E-171 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 PRINTS PR00148 Enolase signature 108 124 4.4E-41 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 PRINTS PR00148 Enolase signature 336 350 4.4E-41 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 PRINTS PR00148 Enolase signature 365 382 4.4E-41 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 PRINTS PR00148 Enolase signature 163 176 4.4E-41 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 PRINTS PR00148 Enolase signature 313 324 4.4E-41 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 PRINTS PR00148 Enolase signature 38 52 4.4E-41 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 SMART SM01193 5 135 2.9E-79 T 14-09-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 SMART SM01192 140 427 9.2E-182 T 14-09-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 PANTHER PTHR11902 7 421 5.0E-222 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 7 426 7.3E-176 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS14035 2e14eff5f351b81665af46943eef9933 429 Pfam PF00113 Enolase, C-terminal TIM barrel domain 142 424 8.8E-112 T 14-09-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PAJ_RS09380 75c0413c28c6bb548c6f4e7a12d7ff07 284 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 15 281 1.2E-84 T 14-09-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 PAJ_RS09380 75c0413c28c6bb548c6f4e7a12d7ff07 284 Gene3D G3DSA:1.10.3720.10 88 281 3.8E-25 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09380 75c0413c28c6bb548c6f4e7a12d7ff07 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 279 1.5E-15 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09380 75c0413c28c6bb548c6f4e7a12d7ff07 284 PANTHER PTHR30043:SF1 79 284 1.6E-97 T 14-09-2016 PAJ_RS09380 75c0413c28c6bb548c6f4e7a12d7ff07 284 PANTHER PTHR30043:SF1 5 61 1.6E-97 T 14-09-2016 PAJ_RS09380 75c0413c28c6bb548c6f4e7a12d7ff07 284 SUPERFAMILY SSF161098 88 273 3.27E-31 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09380 75c0413c28c6bb548c6f4e7a12d7ff07 284 PANTHER PTHR30043 5 61 1.6E-97 T 14-09-2016 PAJ_RS09380 75c0413c28c6bb548c6f4e7a12d7ff07 284 PANTHER PTHR30043 79 284 1.6E-97 T 14-09-2016 PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 SUPERFAMILY SSF56059 79 274 1.45E-56 T 14-09-2016 PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 325 32.681 T 14-09-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 Gene3D G3DSA:3.30.470.20 156 334 6.0E-57 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 Gene3D G3DSA:3.40.50.20 1 69 1.3E-23 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 PANTHER PTHR11609 1 332 4.9E-105 T 14-09-2016 PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 PANTHER PTHR11609:SF5 1 332 4.9E-105 T 14-09-2016 PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 329 1.1E-110 T 14-09-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 SUPERFAMILY SSF52440 2 74 1.73E-15 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 Gene3D G3DSA:3.30.1490.20 94 154 1.6E-22 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 SUPERFAMILY SSF51246 278 353 2.67E-19 T 14-09-2016 IPR011054 Rudiment single hybrid motif PAJ_RS01990 f0999036f599cda9a5b988c3e081af11 354 Pfam PF02222 ATP-grasp domain 88 254 1.1E-53 T 14-09-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 PAJ_RS00530 a64cb4a8b7617c9557c69714ed18c7b6 178 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 173 2.2E-73 T 14-09-2016 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620|UniPathway: UPA00591 PAJ_RS00530 a64cb4a8b7617c9557c69714ed18c7b6 178 PANTHER PTHR22573:SF56 1 171 1.7E-79 T 14-09-2016 PAJ_RS00530 a64cb4a8b7617c9557c69714ed18c7b6 178 Pfam PF00156 Phosphoribosyl transferase domain 12 160 3.5E-27 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PAJ_RS00530 a64cb4a8b7617c9557c69714ed18c7b6 178 Gene3D G3DSA:3.40.50.2020 2 174 1.8E-79 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS00530 a64cb4a8b7617c9557c69714ed18c7b6 178 SUPERFAMILY SSF53271 3 175 3.15E-56 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS00530 a64cb4a8b7617c9557c69714ed18c7b6 178 PANTHER PTHR22573 1 171 1.7E-79 T 14-09-2016 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 TIGRFAM TIGR00115 tig: trigger factor 13 412 3.4E-142 T 14-09-2016 IPR005215 Trigger factor GO:0015031 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 7.3E-43 T 14-09-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 PIRSF PIRSF003095 1 434 1.1E-129 T 14-09-2016 IPR005215 Trigger factor GO:0015031 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 237 9.0E-14 T 14-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 412 1.8E-40 T 14-09-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 SUPERFAMILY SSF54534 96 241 1.22E-36 T 14-09-2016 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 Hamap MF_00303 Trigger factor [tig]. 1 418 22.05 T 14-09-2016 IPR005215 Trigger factor GO:0015031 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 SUPERFAMILY SSF102735 1 130 1.16E-39 T 14-09-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 Gene3D G3DSA:3.10.50.40 154 214 1.4E-7 T 14-09-2016 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 Gene3D G3DSA:1.10.3120.10 215 388 2.6E-62 T 14-09-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 SUPERFAMILY SSF109998 248 429 7.72E-48 T 14-09-2016 IPR027304 Trigger factor/SurA domain PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 PANTHER PTHR30560 1 430 1.8E-146 T 14-09-2016 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 PANTHER PTHR30560:SF3 1 430 1.8E-146 T 14-09-2016 PAJ_RS01710 dd78085c0506ee4466822ea90555bb26 434 Gene3D G3DSA:3.30.70.1050 1 118 8.2E-40 T 14-09-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 Gene3D G3DSA:3.40.50.970 4 322 7.1E-131 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 14-09-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 SUPERFAMILY SSF52922 533 664 1.03E-41 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 2.3E-170 T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 SMART SM00861 355 525 1.1E-69 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 PANTHER PTHR11624:SF85 334 663 0.0 T 14-09-2016 PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 Gene3D G3DSA:3.40.50.920 538 664 1.2E-48 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 Pfam PF02779 Transketolase, pyrimidine binding domain 354 524 5.6E-48 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 SUPERFAMILY SSF52518 5 330 1.79E-119 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 Pfam PF02780 Transketolase, C-terminal domain 540 655 7.8E-17 T 14-09-2016 IPR033248 Transketolase, C-terminal domain PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 PANTHER PTHR11624 334 663 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 Gene3D G3DSA:3.40.50.970 327 533 2.3E-80 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 PANTHER PTHR11624 1 310 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 PANTHER PTHR11624:SF85 1 310 0.0 T 14-09-2016 PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 TIGRFAM TIGR00232 tktlase_bact: transketolase 6 663 0.0 T 14-09-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 PAJ_RS11410 7b4be10ef1098a3e32aa42aea583f3f2 666 SUPERFAMILY SSF52518 334 526 7.0E-69 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Gene3D G3DSA:3.40.50.2300 524 645 8.9E-32 T 14-09-2016 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Gene3D G3DSA:3.30.450.20 142 267 5.1E-22 T 14-09-2016 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 505 1.9E-27 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 SMART SM00387 394 507 1.2E-32 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Gene3D G3DSA:1.10.287.970 1 88 6.3E-40 T 14-09-2016 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 SMART SM00388 282 347 3.6E-17 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 SUPERFAMILY SSF47226 664 775 4.71E-29 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 SUPERFAMILY SSF47384 269 347 1.79E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 SUPERFAMILY SSF55785 141 267 1.03E-21 T 14-09-2016 IPR000014 PAS domain PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Pfam PF00989 PAS fold 156 266 7.8E-16 T 14-09-2016 IPR013767 PAS fold GO:0006355 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 SMART SM00073 676 773 8.4E-16 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Gene3D G3DSA:3.30.565.10 348 508 6.1E-41 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 SMART SM00448 526 639 2.6E-26 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 PANTHER PTHR24423:SF476 4 95 0.0 T 14-09-2016 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 1.1E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Pfam PF01627 Hpt domain 687 761 3.2E-12 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 PANTHER PTHR24423:SF476 153 678 0.0 T 14-09-2016 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 SMART SM00091 155 221 6.3E-6 T 14-09-2016 IPR000014 PAS domain PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Gene3D G3DSA:1.20.120.160 677 776 2.6E-35 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 2.9E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 459 2.9E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 2.9E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 445 2.9E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 PANTHER PTHR24423 4 95 0.0 T 14-09-2016 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 PANTHER PTHR24423 153 678 0.0 T 14-09-2016 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 PIRSF PIRSF003182 1 778 0.0 T 14-09-2016 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Pfam PF00072 Response regulator receiver domain 528 639 1.9E-22 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 SUPERFAMILY SSF52172 526 651 3.7E-29 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 SUPERFAMILY SSF55874 336 504 7.07E-39 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 Gene3D G3DSA:1.10.287.130 274 341 8.4E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS19715 af322dc47eee5495d259029acd1141f6 778 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 276 2.4E-15 T 14-09-2016 IPR000014 PAS domain PAJ_RS13835 dbbb4e68bba8ff47a3bfe38a8398e0d3 219 TIGRFAM TIGR03746 conj_TIGR03746: integrating conjugative element protein, PFL_4703 family 4 204 6.0E-95 T 14-09-2016 IPR021548 Protein of unknown function DUF2895 PAJ_RS13835 dbbb4e68bba8ff47a3bfe38a8398e0d3 219 Pfam PF11444 Protein of unknown function (DUF2895) 8 203 1.3E-88 T 14-09-2016 IPR021548 Protein of unknown function DUF2895 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 437 34.728 T 14-09-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 Pfam PF08245 Mur ligase middle domain 110 280 3.2E-29 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 PANTHER PTHR23135 1 437 2.0E-168 T 14-09-2016 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 Gene3D G3DSA:3.40.1190.10 94 299 9.0E-68 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 Pfam PF02875 Mur ligase family, glutamate ligase domain 301 366 3.1E-10 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 Gene3D G3DSA:3.90.190.20 300 433 2.6E-44 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 SUPERFAMILY SSF53623 95 297 3.14E-56 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 PANTHER PTHR23135:SF2 1 437 2.0E-168 T 14-09-2016 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 SUPERFAMILY SSF53244 299 437 8.85E-51 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 SUPERFAMILY SSF51984 3 94 2.09E-22 T 14-09-2016 PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 Gene3D G3DSA:3.40.50.720 3 92 1.3E-24 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00315 1bb5501fc6e3f21ca188bd0947e3dfa8 438 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 435 5.3E-126 T 14-09-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 Gene3D G3DSA:3.40.50.300 10 193 5.3E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 SUPERFAMILY SSF52540 11 205 1.23E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 PANTHER PTHR11649 6 300 3.3E-128 T 14-09-2016 PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 Hamap MF_00367 GTPase Era [era]. 6 297 35.937 T 14-09-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 Pfam PF01926 50S ribosome-binding GTPase 11 125 2.4E-24 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 PANTHER PTHR11649:SF3 6 300 3.3E-128 T 14-09-2016 PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 TIGRFAM TIGR00436 era: GTP-binding protein Era 9 280 4.3E-118 T 14-09-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 11 31 1.5E-6 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 79 97 1.5E-6 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 Pfam PF07650 KH domain 209 285 4.5E-20 T 14-09-2016 IPR004044 K Homology domain, type 2 GO:0003723 PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 169 1.9E-41 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 Gene3D G3DSA:3.30.300.20 194 294 1.2E-40 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta PAJ_RS12035 382f99142aeceeb702b5a80409a403c4 301 SUPERFAMILY SSF54814 182 297 4.51E-41 T 14-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 PAJ_RS14280 d74eb7b3f762ef0b42f4e0ec0aaaa681 170 SUPERFAMILY SSF55729 2 136 4.49E-23 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS14280 d74eb7b3f762ef0b42f4e0ec0aaaa681 170 PANTHER PTHR13947 45 134 2.7E-19 T 14-09-2016 PAJ_RS14280 d74eb7b3f762ef0b42f4e0ec0aaaa681 170 Gene3D G3DSA:3.40.630.30 3 135 2.8E-24 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS14280 d74eb7b3f762ef0b42f4e0ec0aaaa681 170 Pfam PF00583 Acetyltransferase (GNAT) family 58 134 7.4E-10 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS09020 8f3fb18c4a2ded373fc0df1403e0c58a 277 SUPERFAMILY SSF55486 56 267 1.17E-37 T 14-09-2016 PAJ_RS09020 8f3fb18c4a2ded373fc0df1403e0c58a 277 PANTHER PTHR30164 1 274 1.4E-90 T 14-09-2016 PAJ_RS09020 8f3fb18c4a2ded373fc0df1403e0c58a 277 Gene3D G3DSA:3.40.390.10 52 266 1.1E-26 T 14-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 PAJ_RS09020 8f3fb18c4a2ded373fc0df1403e0c58a 277 Pfam PF06167 Glucose-regulated metallo-peptidase M90 41 265 1.0E-63 T 14-09-2016 IPR010384 MtfA family PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 Pfam PF02926 THUMP domain 29 162 7.0E-22 T 14-09-2016 IPR004114 THUMP domain GO:0003723 PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 SUPERFAMILY SSF52821 406 481 2.75E-9 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 SUPERFAMILY SSF143437 1 173 2.44E-48 T 14-09-2016 PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 482 221.221 T 14-09-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 UniPathway: UPA00060 PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 Gene3D G3DSA:3.40.50.620 173 333 1.1E-36 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 PANTHER PTHR14911 3 417 1.1E-265 T 14-09-2016 PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 Gene3D G3DSA:3.40.250.10 408 480 3.7E-8 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 PANTHER PTHR14911:SF15 3 417 1.1E-265 T 14-09-2016 PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 SUPERFAMILY SSF52402 174 372 3.31E-40 T 14-09-2016 PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 383 482 9.4E-41 T 14-09-2016 IPR026340 Thiazole biosynthesis domain GO:0052837 UniPathway: UPA00060 PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 369 1.3E-129 T 14-09-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 UniPathway: UPA00060 PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 369 5.0E-78 T 14-09-2016 IPR020536 Thil, AANH domain GO:0004810 UniPathway: UPA00060 PAJ_RS01630 44bb35213aa8f484fe2657aba68a7063 482 SMART SM00981 75 165 1.6E-23 T 14-09-2016 IPR004114 THUMP domain GO:0003723 PAJ_RS13365 dcd8b6db7289f0a84e335a3f2b426947 219 PANTHER PTHR11934 1 219 1.9E-147 T 14-09-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS13365 dcd8b6db7289f0a84e335a3f2b426947 219 SUPERFAMILY SSF75445 127 198 2.49E-24 T 14-09-2016 PAJ_RS13365 dcd8b6db7289f0a84e335a3f2b426947 219 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 2.1E-59 T 14-09-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS13365 dcd8b6db7289f0a84e335a3f2b426947 219 SUPERFAMILY SSF100950 1 146 5.58E-48 T 14-09-2016 PAJ_RS13365 dcd8b6db7289f0a84e335a3f2b426947 219 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 34.664 T 14-09-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS13365 dcd8b6db7289f0a84e335a3f2b426947 219 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 5.6E-71 T 14-09-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS13365 dcd8b6db7289f0a84e335a3f2b426947 219 Gene3D G3DSA:3.40.50.1360 1 136 1.0E-59 T 14-09-2016 PAJ_RS13365 dcd8b6db7289f0a84e335a3f2b426947 219 PANTHER PTHR11934:SF11 1 219 1.9E-147 T 14-09-2016 PAJ_RS13365 dcd8b6db7289f0a84e335a3f2b426947 219 Gene3D G3DSA:3.30.70.260 137 196 1.8E-29 T 14-09-2016 PAJ_RS03315 7e14ca5b2b304f35a522ed1082916bab 522 Gene3D G3DSA:1.20.1250.20 14 201 3.0E-36 T 14-09-2016 PAJ_RS03315 7e14ca5b2b304f35a522ed1082916bab 522 PANTHER PTHR23501 8 510 2.3E-152 T 14-09-2016 PAJ_RS03315 7e14ca5b2b304f35a522ed1082916bab 522 Pfam PF07690 Major Facilitator Superfamily 21 417 1.8E-50 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS03315 7e14ca5b2b304f35a522ed1082916bab 522 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 506 9.8E-130 T 14-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 PAJ_RS03315 7e14ca5b2b304f35a522ed1082916bab 522 PANTHER PTHR23501:SF69 8 510 2.3E-152 T 14-09-2016 PAJ_RS03315 7e14ca5b2b304f35a522ed1082916bab 522 Gene3D G3DSA:1.20.1250.20 492 513 2.7E-17 T 14-09-2016 PAJ_RS03315 7e14ca5b2b304f35a522ed1082916bab 522 Gene3D G3DSA:1.20.1250.20 271 436 2.7E-17 T 14-09-2016 PAJ_RS03315 7e14ca5b2b304f35a522ed1082916bab 522 SUPERFAMILY SSF103473 487 512 6.28E-66 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS03315 7e14ca5b2b304f35a522ed1082916bab 522 SUPERFAMILY SSF103473 6 201 6.28E-66 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS03315 7e14ca5b2b304f35a522ed1082916bab 522 SUPERFAMILY SSF103473 256 427 6.28E-66 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS12390 9a9ebca35753c66c24dcd76958836ed3 232 PANTHER PTHR26402:SF531 5 228 1.7E-67 T 14-09-2016 PAJ_RS12390 9a9ebca35753c66c24dcd76958836ed3 232 Gene3D G3DSA:3.40.50.2300 5 126 5.8E-37 T 14-09-2016 PAJ_RS12390 9a9ebca35753c66c24dcd76958836ed3 232 SMART SM00448 5 115 3.6E-35 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS12390 9a9ebca35753c66c24dcd76958836ed3 232 SUPERFAMILY SSF46894 156 228 5.67E-17 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS12390 9a9ebca35753c66c24dcd76958836ed3 232 Gene3D G3DSA:1.10.10.10 139 230 1.8E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12390 9a9ebca35753c66c24dcd76958836ed3 232 SUPERFAMILY SSF52172 3 131 1.27E-37 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS12390 9a9ebca35753c66c24dcd76958836ed3 232 SMART SM00862 155 228 2.0E-16 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS12390 9a9ebca35753c66c24dcd76958836ed3 232 Pfam PF00072 Response regulator receiver domain 7 116 7.7E-27 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS12390 9a9ebca35753c66c24dcd76958836ed3 232 PANTHER PTHR26402 5 228 1.7E-67 T 14-09-2016 PAJ_RS12390 9a9ebca35753c66c24dcd76958836ed3 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 228 3.7E-16 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS08180 175dce6588bd4d93b9d3703d833f47b1 879 PANTHER PTHR30462:SF0 1 875 0.0 T 14-09-2016 PAJ_RS08180 175dce6588bd4d93b9d3703d833f47b1 879 PANTHER PTHR30462 1 875 0.0 T 14-09-2016 PAJ_RS08180 175dce6588bd4d93b9d3703d833f47b1 879 Pfam PF02470 MlaD protein 283 349 2.7E-6 T 14-09-2016 IPR003399 Mce/MlaD PAJ_RS08180 175dce6588bd4d93b9d3703d833f47b1 879 Pfam PF02470 MlaD protein 633 722 2.2E-11 T 14-09-2016 IPR003399 Mce/MlaD PAJ_RS08180 175dce6588bd4d93b9d3703d833f47b1 879 Pfam PF02470 MlaD protein 746 806 4.8E-9 T 14-09-2016 IPR003399 Mce/MlaD PAJ_RS08180 175dce6588bd4d93b9d3703d833f47b1 879 Pfam PF02470 MlaD protein 46 137 2.7E-15 T 14-09-2016 IPR003399 Mce/MlaD PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 Gene3D G3DSA:1.20.1600.10 343 457 1.1E-90 T 14-09-2016 PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 Gene3D G3DSA:1.20.1600.10 135 305 1.1E-90 T 14-09-2016 PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 Gene3D G3DSA:1.20.1600.10 51 88 1.1E-90 T 14-09-2016 PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 8 456 8.7E-126 T 14-09-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 Gene3D G3DSA:2.20.200.10 306 338 2.0E-16 T 14-09-2016 PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 Gene3D G3DSA:2.20.200.10 98 134 2.0E-16 T 14-09-2016 PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 SUPERFAMILY SSF56954 3 458 2.88E-106 T 14-09-2016 PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 Pfam PF02321 Outer membrane efflux protein 63 247 5.5E-19 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 Pfam PF02321 Outer membrane efflux protein 272 454 1.2E-25 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 PANTHER PTHR30203:SF7 9 460 1.6E-124 T 14-09-2016 PAJ_RS20035 0f8874db213d55a6fa437ff23584e8e8 461 PANTHER PTHR30203 9 460 1.6E-124 T 14-09-2016 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 PANTHER PTHR30193:SF22 257 509 1.5E-141 T 14-09-2016 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 SUPERFAMILY SSF161098 259 501 3.01E-57 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 Gene3D G3DSA:1.10.3720.10 273 508 3.0E-59 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 Gene3D G3DSA:3.10.650.10 194 267 4.4E-34 T 14-09-2016 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 PANTHER PTHR30193:SF22 36 104 1.5E-141 T 14-09-2016 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 99 258 4.4E-53 T 14-09-2016 IPR029345 Maltose transport system permease protein MalF, P2 domain PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 Gene3D G3DSA:2.40.430.10 119 193 6.5E-29 T 14-09-2016 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 296 500 4.3E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 SUPERFAMILY SSF160964 13 258 3.66E-78 T 14-09-2016 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 PANTHER PTHR30193 257 509 1.5E-141 T 14-09-2016 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 Gene3D G3DSA:1.20.58.370 5 94 3.9E-33 T 14-09-2016 PAJ_RS06840 0e5607d04299345d34555548206c7feb 512 PANTHER PTHR30193 36 104 1.5E-141 T 14-09-2016 PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 Pfam PF01743 Poly A polymerase head domain 4 122 1.1E-17 T 14-09-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 Gene3D G3DSA:1.10.3090.10 122 359 9.7E-54 T 14-09-2016 PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 Pfam PF01966 HD domain 231 328 7.1E-9 T 14-09-2016 IPR006674 HD domain PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 PANTHER PTHR13734 5 246 6.9E-74 T 14-09-2016 PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 SUPERFAMILY SSF81301 2 119 1.2E-29 T 14-09-2016 PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 PIRSF PIRSF000813 1 404 5.1E-188 T 14-09-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 45.244 T 14-09-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 SUPERFAMILY SSF81891 121 403 1.96E-55 T 14-09-2016 PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 6.9E-17 T 14-09-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 Gene3D G3DSA:3.30.460.10 2 121 1.9E-30 T 14-09-2016 PAJ_RS14600 f4f0433d3cff71bb738658c3eff01471 405 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 404 50.392 T 14-09-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PANTHER PTHR22912 1 461 1.8E-293 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 Gene3D G3DSA:3.50.50.60 156 278 6.5E-26 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 326 5.3E-58 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PANTHER PTHR22912:SF93 1 461 1.8E-293 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 Gene3D G3DSA:3.30.390.30 345 460 3.8E-33 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 457 5.2E-30 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 5.2E-52 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 5.2E-52 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 5.2E-52 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 5.2E-52 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 5.2E-52 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 5.2E-52 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 5.2E-52 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 5.2E-52 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 5.2E-52 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 466 68.312 T 14-09-2016 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 SUPERFAMILY SSF55424 345 463 1.72E-30 T 14-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 1.0E-25 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.0E-25 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 1.0E-25 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 1.0E-25 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 1.0E-25 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 PIRSF PIRSF000350 1 463 9.5E-72 T 14-09-2016 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 SUPERFAMILY SSF51905 1 323 5.78E-55 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 Gene3D G3DSA:3.50.50.60 5 150 7.7E-57 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16975 f058d05aae6977725ba52f79694eac8f 466 Gene3D G3DSA:3.50.50.60 279 338 7.7E-57 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS05375 03303833006698f129b34712d5974f94 392 PANTHER PTHR23517:SF1 1 389 5.7E-152 T 14-09-2016 PAJ_RS05375 03303833006698f129b34712d5974f94 392 Pfam PF07690 Major Facilitator Superfamily 223 390 2.9E-16 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS05375 03303833006698f129b34712d5974f94 392 SUPERFAMILY SSF103473 15 390 2.62E-46 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS05375 03303833006698f129b34712d5974f94 392 PANTHER PTHR23517 1 389 5.7E-152 T 14-09-2016 PAJ_RS05375 03303833006698f129b34712d5974f94 392 Gene3D G3DSA:1.20.1250.20 17 194 9.2E-18 T 14-09-2016 PAJ_RS05375 03303833006698f129b34712d5974f94 392 Gene3D G3DSA:1.20.1250.20 218 390 7.8E-21 T 14-09-2016 PAJ_RS04565 d82724fdcd9d9000ca34d5406206bee1 339 PANTHER PTHR30518 1 339 5.3E-94 T 14-09-2016 PAJ_RS04565 d82724fdcd9d9000ca34d5406206bee1 339 Pfam PF02618 YceG-like family 43 327 2.9E-81 T 14-09-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like PAJ_RS04565 d82724fdcd9d9000ca34d5406206bee1 339 Gene3D G3DSA:3.30.160.60 72 109 9.6E-22 T 14-09-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 PAJ_RS04565 d82724fdcd9d9000ca34d5406206bee1 339 PANTHER PTHR30518:SF2 1 339 5.3E-94 T 14-09-2016 PAJ_RS04565 d82724fdcd9d9000ca34d5406206bee1 339 Gene3D G3DSA:3.30.160.60 301 337 4.2E-19 T 14-09-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 PAJ_RS04565 d82724fdcd9d9000ca34d5406206bee1 339 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 10 335 5.5E-125 T 14-09-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like PAJ_RS01955 481e9fa33acfae86c3f2214ac033caaa 152 SUPERFAMILY SSF141322 107 146 5.36E-5 T 14-09-2016 PAJ_RS01955 481e9fa33acfae86c3f2214ac033caaa 152 Gene3D G3DSA:2.40.50.140 93 146 8.2E-11 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS01955 481e9fa33acfae86c3f2214ac033caaa 152 PANTHER PTHR33507 1 150 3.4E-46 T 14-09-2016 PAJ_RS01955 481e9fa33acfae86c3f2214ac033caaa 152 PANTHER PTHR33507:SF3 1 150 3.4E-46 T 14-09-2016 PAJ_RS01955 481e9fa33acfae86c3f2214ac033caaa 152 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 147 8.9E-24 T 14-09-2016 IPR002810 NfeD-like, C-terminal domain PAJ_RS03125 556a798cb80e16acf12d4f95f77e9b39 303 Gene3D G3DSA:3.40.190.10 23 132 5.3E-56 T 14-09-2016 PAJ_RS03125 556a798cb80e16acf12d4f95f77e9b39 303 Gene3D G3DSA:3.40.190.10 253 303 5.3E-56 T 14-09-2016 PAJ_RS03125 556a798cb80e16acf12d4f95f77e9b39 303 Gene3D G3DSA:3.40.190.120 133 240 2.3E-27 T 14-09-2016 PAJ_RS03125 556a798cb80e16acf12d4f95f77e9b39 303 PANTHER PTHR30177:SF12 25 303 8.9E-129 T 14-09-2016 PAJ_RS03125 556a798cb80e16acf12d4f95f77e9b39 303 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 24 299 7.3E-62 T 14-09-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 PAJ_RS03125 556a798cb80e16acf12d4f95f77e9b39 303 PANTHER PTHR30177 25 303 8.9E-129 T 14-09-2016 PAJ_RS03125 556a798cb80e16acf12d4f95f77e9b39 303 SUPERFAMILY SSF53850 24 302 2.44E-60 T 14-09-2016 PAJ_RS05510 671f0f0433dbc6274bbe78e3191fc48b 132 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 127 5.3E-42 T 14-09-2016 IPR007360 Invasion gene expression up-regulator, SirB PAJ_RS05510 671f0f0433dbc6274bbe78e3191fc48b 132 PIRSF PIRSF005610 1 125 5.4E-24 T 14-09-2016 IPR007360 Invasion gene expression up-regulator, SirB PAJ_RS05510 671f0f0433dbc6274bbe78e3191fc48b 132 PANTHER PTHR39594 1 131 5.0E-42 T 14-09-2016 PAJ_RS02675 31645222c9d50804fedf3d0d6fa686ea 245 SUPERFAMILY SSF88713 1 243 1.63E-90 T 14-09-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PAJ_RS02675 31645222c9d50804fedf3d0d6fa686ea 245 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 240 41.735 T 14-09-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF PAJ_RS02675 31645222c9d50804fedf3d0d6fa686ea 245 PANTHER PTHR30292:SF0 1 245 1.7E-117 T 14-09-2016 PAJ_RS02675 31645222c9d50804fedf3d0d6fa686ea 245 Pfam PF03746 LamB/YcsF family 3 234 1.8E-92 T 14-09-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF PAJ_RS02675 31645222c9d50804fedf3d0d6fa686ea 245 PANTHER PTHR30292 1 245 1.7E-117 T 14-09-2016 PAJ_RS09010 fe42ffaa81e03d6ab113fcd10b0bf897 234 SUPERFAMILY SSF109604 1 214 8.48E-58 T 14-09-2016 PAJ_RS09010 fe42ffaa81e03d6ab113fcd10b0bf897 234 PANTHER PTHR33594:SF1 8 225 2.2E-54 T 14-09-2016 PAJ_RS09010 fe42ffaa81e03d6ab113fcd10b0bf897 234 Gene3D G3DSA:1.10.3210.10 184 214 3.6E-39 T 14-09-2016 IPR006674 HD domain PAJ_RS09010 fe42ffaa81e03d6ab113fcd10b0bf897 234 Gene3D G3DSA:1.10.3210.10 3 145 3.6E-39 T 14-09-2016 IPR006674 HD domain PAJ_RS09010 fe42ffaa81e03d6ab113fcd10b0bf897 234 PANTHER PTHR33594 8 225 2.2E-54 T 14-09-2016 PAJ_RS09010 fe42ffaa81e03d6ab113fcd10b0bf897 234 SMART SM00471 22 141 4.3E-8 T 14-09-2016 IPR003607 HD/PDEase domain PAJ_RS09010 fe42ffaa81e03d6ab113fcd10b0bf897 234 Pfam PF01966 HD domain 28 130 1.1E-12 T 14-09-2016 IPR006674 HD domain PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 381 388 1.2E-13 T 14-09-2016 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 258 283 1.2E-13 T 14-09-2016 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 357 1.2E-13 T 14-09-2016 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 118 140 1.2E-13 T 14-09-2016 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 120 409 1.5E-44 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 342 358 2.0E-14 T 14-09-2016 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 119 138 2.0E-14 T 14-09-2016 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 213 231 2.0E-14 T 14-09-2016 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 276 2.0E-14 T 14-09-2016 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 Gene3D G3DSA:3.50.50.60 338 420 4.1E-8 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 Gene3D G3DSA:3.30.390.30 428 480 1.3E-11 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 PANTHER PTHR22912:SF180 99 473 3.1E-96 T 14-09-2016 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 SUPERFAMILY SSF50022 3 101 2.62E-24 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 PANTHER PTHR22912 99 473 3.1E-96 T 14-09-2016 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 Pfam PF00355 Rieske [2Fe-2S] domain 5 89 3.2E-15 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 SUPERFAMILY SSF55424 422 496 9.89E-17 T 14-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 Gene3D G3DSA:3.50.50.60 221 337 2.9E-35 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 Gene3D G3DSA:2.102.10.10 4 102 1.9E-28 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 SUPERFAMILY SSF51905 120 275 2.02E-37 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 SUPERFAMILY SSF51905 304 442 2.02E-37 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS01440 c410dd74ac3435748be3cb1f7e0e960f 510 Gene3D G3DSA:3.50.50.60 119 220 3.1E-19 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS21590 f406697382c196129d295a806c885a6a 515 Gene3D G3DSA:3.40.50.300 2 81 9.1E-8 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS21590 f406697382c196129d295a806c885a6a 515 Pfam PF00271 Helicase conserved C-terminal domain 3 66 5.3E-6 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS21590 f406697382c196129d295a806c885a6a 515 PANTHER PTHR18934 3 164 8.2E-62 T 14-09-2016 PAJ_RS21590 f406697382c196129d295a806c885a6a 515 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 1 515 3.6E-183 T 14-09-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type PAJ_RS21590 f406697382c196129d295a806c885a6a 515 Pfam PF04408 Helicase associated domain (HA2) 128 186 2.9E-12 T 14-09-2016 IPR007502 Helicase-associated domain GO:0004386 PAJ_RS21590 f406697382c196129d295a806c885a6a 515 SUPERFAMILY SSF52540 2 166 1.53E-34 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS21590 f406697382c196129d295a806c885a6a 515 SMART SM00847 127 232 9.1E-9 T 14-09-2016 IPR007502 Helicase-associated domain GO:0004386 PAJ_RS21590 f406697382c196129d295a806c885a6a 515 Pfam PF08482 ATP-dependent helicase C-terminal 405 515 2.7E-37 T 14-09-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal PAJ_RS08620 bf20600f465aec66fc3a91d693a69af1 486 Pfam PF00083 Sugar (and other) transporter 75 467 1.5E-37 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS08620 bf20600f465aec66fc3a91d693a69af1 486 SUPERFAMILY SSF103473 35 477 6.54E-61 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS08620 bf20600f465aec66fc3a91d693a69af1 486 Gene3D G3DSA:1.20.1250.20 41 231 5.1E-25 T 14-09-2016 PAJ_RS08620 bf20600f465aec66fc3a91d693a69af1 486 Gene3D G3DSA:1.20.1250.20 285 474 1.6E-14 T 14-09-2016 PAJ_RS08620 bf20600f465aec66fc3a91d693a69af1 486 PANTHER PTHR24064 32 479 1.4E-49 T 14-09-2016 PAJ_RS08620 bf20600f465aec66fc3a91d693a69af1 486 PANTHER PTHR24064:SF168 32 479 1.4E-49 T 14-09-2016 PAJ_RS17425 078fdaf1835b8c7282eb3c3faf71c9bc 315 PANTHER PTHR23091:SF249 1 178 4.4E-104 T 14-09-2016 PAJ_RS17425 078fdaf1835b8c7282eb3c3faf71c9bc 315 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 165 298 4.3E-47 T 14-09-2016 IPR012660 Thioesterase, putative PAJ_RS17425 078fdaf1835b8c7282eb3c3faf71c9bc 315 PANTHER PTHR23091 1 178 4.4E-104 T 14-09-2016 PAJ_RS17425 078fdaf1835b8c7282eb3c3faf71c9bc 315 SUPERFAMILY SSF54637 155 297 4.62E-40 T 14-09-2016 IPR029069 HotDog domain PAJ_RS17425 078fdaf1835b8c7282eb3c3faf71c9bc 315 Gene3D G3DSA:3.10.129.10 146 298 1.3E-62 T 14-09-2016 IPR029069 HotDog domain PAJ_RS17425 078fdaf1835b8c7282eb3c3faf71c9bc 315 SUPERFAMILY SSF55729 2 145 2.4E-27 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS17425 078fdaf1835b8c7282eb3c3faf71c9bc 315 Gene3D G3DSA:3.40.630.30 9 144 1.1E-24 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS17425 078fdaf1835b8c7282eb3c3faf71c9bc 315 Pfam PF00583 Acetyltransferase (GNAT) family 50 122 3.4E-13 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS17425 078fdaf1835b8c7282eb3c3faf71c9bc 315 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 158 297 4.1E-47 T 14-09-2016 IPR012660 Thioesterase, putative PAJ_RS07280 05b3fe7dc09b20e23bc6647964a830e3 88 SUPERFAMILY SSF57716 39 72 3.28E-7 T 14-09-2016 PAJ_RS07280 05b3fe7dc09b20e23bc6647964a830e3 88 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 37 68 2.7E-12 T 14-09-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 PAJ_RS07280 05b3fe7dc09b20e23bc6647964a830e3 88 PANTHER PTHR38777 2 88 1.2E-26 T 14-09-2016 PAJ_RS07280 05b3fe7dc09b20e23bc6647964a830e3 88 PANTHER PTHR38777:SF1 2 88 1.2E-26 T 14-09-2016 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 SUPERFAMILY SSF53738 2 181 1.41E-49 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 441 3.5E-15 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 Gene3D G3DSA:3.40.120.10 251 359 5.0E-32 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 SUPERFAMILY SSF53738 258 364 1.06E-30 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 PANTHER PTHR22573:SF15 1 443 2.2E-183 T 14-09-2016 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 PANTHER PTHR22573 1 443 2.2E-183 T 14-09-2016 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 444 47.689 T 14-09-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 14-09-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 Gene3D G3DSA:3.30.310.50 360 442 2.8E-19 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 Gene3D G3DSA:3.40.120.10 176 250 2.5E-27 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 8.7E-20 T 14-09-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 Gene3D G3DSA:3.40.120.10 4 150 3.9E-46 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 363 3.0E-31 T 14-09-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 442 1.5E-195 T 14-09-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 SUPERFAMILY SSF53738 156 255 3.57E-30 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 SUPERFAMILY SSF55957 357 443 1.7E-22 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 4.8E-15 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 4.8E-15 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 4.8E-15 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS19875 95322b9f7a5db4017508720a928daccd 444 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 1.1E-45 T 14-09-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS05275 22777b60ba6dfbfa70de3dc078b877ab 191 PANTHER PTHR34406 1 185 6.3E-23 T 14-09-2016 PAJ_RS05275 22777b60ba6dfbfa70de3dc078b877ab 191 Pfam PF04264 YceI-like domain 25 185 1.2E-22 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS05275 22777b60ba6dfbfa70de3dc078b877ab 191 PANTHER PTHR34406:SF1 1 185 6.3E-23 T 14-09-2016 PAJ_RS05275 22777b60ba6dfbfa70de3dc078b877ab 191 SUPERFAMILY SSF101874 24 185 6.54E-33 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS05275 22777b60ba6dfbfa70de3dc078b877ab 191 SMART SM00867 24 186 4.5E-28 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS05275 22777b60ba6dfbfa70de3dc078b877ab 191 Gene3D G3DSA:2.40.128.110 25 187 6.1E-35 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS06335 3f44dc78e4d8252a94561a707d91c8c1 275 SMART SM00849 46 254 1.7E-17 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS06335 3f44dc78e4d8252a94561a707d91c8c1 275 Gene3D G3DSA:3.60.15.10 44 272 2.6E-37 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS06335 3f44dc78e4d8252a94561a707d91c8c1 275 PANTHER PTHR23200 41 255 1.9E-41 T 14-09-2016 PAJ_RS06335 3f44dc78e4d8252a94561a707d91c8c1 275 PANTHER PTHR23200:SF43 41 255 1.9E-41 T 14-09-2016 PAJ_RS06335 3f44dc78e4d8252a94561a707d91c8c1 275 Pfam PF00753 Metallo-beta-lactamase superfamily 45 220 8.5E-21 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS06335 3f44dc78e4d8252a94561a707d91c8c1 275 SUPERFAMILY SSF56281 43 273 2.49E-31 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS08545 4e61c3ce99fb0e81c030d760a56a513a 478 Pfam PF00982 Glycosyltransferase family 20 18 456 1.2E-137 T 14-09-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 PAJ_RS08545 4e61c3ce99fb0e81c030d760a56a513a 478 TIGRFAM TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 3 456 3.4E-174 T 14-09-2016 IPR012766 Alpha,alpha-trehalose-phosphate synthase GO:0003825|GO:0005992 KEGG: 00500+2.4.1.15 PAJ_RS08545 4e61c3ce99fb0e81c030d760a56a513a 478 Gene3D G3DSA:3.40.50.2000 1 244 4.8E-73 T 14-09-2016 PAJ_RS08545 4e61c3ce99fb0e81c030d760a56a513a 478 Gene3D G3DSA:3.40.50.2000 247 440 1.3E-73 T 14-09-2016 PAJ_RS08545 4e61c3ce99fb0e81c030d760a56a513a 478 PANTHER PTHR10788 1 464 2.4E-180 T 14-09-2016 PAJ_RS08545 4e61c3ce99fb0e81c030d760a56a513a 478 SUPERFAMILY SSF53756 2 458 3.7E-144 T 14-09-2016 PAJ_RS08545 4e61c3ce99fb0e81c030d760a56a513a 478 PANTHER PTHR10788:SF6 1 464 2.4E-180 T 14-09-2016 PAJ_RS07205 6cfa570f73a4d9e130430ed80973e5d4 107 ProDom PD073251 YNFB PERIPLASMIC SECRETED ORF9 PRECURSOR SIGNAL SIMILAR ECS2289 EXPORTED ESCHERICHIA 1 107 2.0E-31 T 14-09-2016 IPR009700 Protein of unknown function DUF1283 PAJ_RS07205 6cfa570f73a4d9e130430ed80973e5d4 107 Hamap MF_01581 UPF0482 protein YnfB [ynfB]. 1 107 27.616 T 14-09-2016 IPR009700 Protein of unknown function DUF1283 PAJ_RS07205 6cfa570f73a4d9e130430ed80973e5d4 107 Pfam PF06932 Protein of unknown function (DUF1283) 26 107 7.8E-45 T 14-09-2016 IPR009700 Protein of unknown function DUF1283 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 SUPERFAMILY SSF55681 70 268 2.06E-60 T 14-09-2016 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 Pfam PF02237 Biotin protein ligase C terminal domain 271 317 5.9E-12 T 14-09-2016 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 81 317 9.8E-78 T 14-09-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 317 32.637 T 14-09-2016 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 Gene3D G3DSA:1.10.10.10 1 63 2.1E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 Pfam PF08279 HTH domain 9 58 1.2E-11 T 14-09-2016 IPR013196 Helix-turn-helix, type 11 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 Gene3D G3DSA:2.30.30.100 271 318 3.0E-22 T 14-09-2016 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 SUPERFAMILY SSF50037 271 317 7.78E-11 T 14-09-2016 IPR008988 Transcriptional repressor, C-terminal PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 Gene3D G3DSA:3.30.930.10 71 269 1.1E-60 T 14-09-2016 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 Pfam PF03099 Biotin/lipoate A/B protein ligase family 83 208 1.7E-23 T 14-09-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 PANTHER PTHR12835 8 317 3.1E-96 T 14-09-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 6 76 5.0E-27 T 14-09-2016 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 PAJ_RS18620 5ada44f738d85ca0a6cc844b605938f2 319 SUPERFAMILY SSF46785 4 60 8.77E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 PANTHER PTHR11019 148 312 2.2E-59 T 14-09-2016 PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 Gene3D G3DSA:1.10.10.60 267 312 8.9E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 Pfam PF12852 Cupin 17 197 1.8E-33 T 14-09-2016 IPR032783 AraC-type transcription regulator, ligand-binding domain PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 PANTHER PTHR11019:SF77 40 128 2.2E-59 T 14-09-2016 PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 Gene3D G3DSA:1.10.10.60 212 266 3.1E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 SUPERFAMILY SSF46689 213 264 6.91E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 Pfam PF12833 Helix-turn-helix domain 236 312 5.1E-21 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 SMART SM00342 230 313 1.8E-27 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 PANTHER PTHR11019:SF77 148 312 2.2E-59 T 14-09-2016 PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 Gene3D G3DSA:2.60.120.280 30 192 4.9E-8 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 SUPERFAMILY SSF46689 266 312 3.05E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06310 9e1181248529231cb46d4089199fefa4 315 PANTHER PTHR11019 40 128 2.2E-59 T 14-09-2016 PAJ_RS20175 fbef9acbfd7241d205ae899c05eef588 416 PANTHER PTHR37419:SF2 31 344 6.4E-14 T 14-09-2016 PAJ_RS20175 fbef9acbfd7241d205ae899c05eef588 416 Pfam PF07805 HipA-like N-terminal domain 183 254 3.6E-12 T 14-09-2016 IPR012894 HipA, N-terminal subdomain 2 PAJ_RS20175 fbef9acbfd7241d205ae899c05eef588 416 Pfam PF07804 HipA-like C-terminal domain 259 392 1.4E-30 T 14-09-2016 IPR012893 HipA-like, C-terminal PAJ_RS20175 fbef9acbfd7241d205ae899c05eef588 416 Pfam PF13657 HipA N-terminal domain 21 97 6.9E-6 T 14-09-2016 IPR017508 HipA, N-terminal subdomain 1 PAJ_RS20175 fbef9acbfd7241d205ae899c05eef588 416 PANTHER PTHR37419 31 344 6.4E-14 T 14-09-2016 PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 TIGRFAM TIGR00836 amt: ammonium transporter 32 427 3.0E-135 T 14-09-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 Gene3D G3DSA:1.10.3430.10 27 408 5.9E-138 T 14-09-2016 IPR029020 Ammonium/urea transporter PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 PANTHER PTHR11730:SF17 4 428 5.4E-187 T 14-09-2016 PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 ProSitePatterns PS01219 Ammonium transporters signature. 183 208 - T 14-09-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 Pfam PF00909 Ammonium Transporter Family 34 427 3.8E-125 T 14-09-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 PRINTS PR00342 Rhesus blood group protein signature 127 143 9.8E-6 T 14-09-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 PRINTS PR00342 Rhesus blood group protein signature 222 240 9.8E-6 T 14-09-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 PRINTS PR00342 Rhesus blood group protein signature 253 275 9.8E-6 T 14-09-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 PRINTS PR00342 Rhesus blood group protein signature 308 326 9.8E-6 T 14-09-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 PANTHER PTHR11730 4 428 5.4E-187 T 14-09-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 PAJ_RS01780 0159189e9b3ee20b2658be889280f107 429 SUPERFAMILY SSF111352 28 408 6.67E-127 T 14-09-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 PAJ_RS16825 f304eba5199df0cfbf885bf37b9b85f9 303 PANTHER PTHR30537 2 300 8.2E-85 T 14-09-2016 PAJ_RS16825 f304eba5199df0cfbf885bf37b9b85f9 303 Pfam PF03466 LysR substrate binding domain 96 300 1.3E-37 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS16825 f304eba5199df0cfbf885bf37b9b85f9 303 SUPERFAMILY SSF46785 14 118 8.9E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16825 f304eba5199df0cfbf885bf37b9b85f9 303 PANTHER PTHR30537:SF5 2 300 8.2E-85 T 14-09-2016 PAJ_RS16825 f304eba5199df0cfbf885bf37b9b85f9 303 Gene3D G3DSA:1.10.10.10 14 93 6.2E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16825 f304eba5199df0cfbf885bf37b9b85f9 303 SUPERFAMILY SSF53850 97 301 4.89E-36 T 14-09-2016 PAJ_RS16825 f304eba5199df0cfbf885bf37b9b85f9 303 Gene3D G3DSA:3.40.190.10 182 265 9.5E-16 T 14-09-2016 PAJ_RS16825 f304eba5199df0cfbf885bf37b9b85f9 303 Gene3D G3DSA:3.40.190.10 99 181 8.6E-18 T 14-09-2016 PAJ_RS16825 f304eba5199df0cfbf885bf37b9b85f9 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 70 4.4E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS18835 a9d0fb6968ef82b650729de688c60a01 276 SUPERFAMILY SSF46785 27 100 1.3E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18835 a9d0fb6968ef82b650729de688c60a01 276 Gene3D G3DSA:1.10.10.10 16 88 1.0E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18835 a9d0fb6968ef82b650729de688c60a01 276 SMART SM00346 27 117 9.8E-34 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS18835 a9d0fb6968ef82b650729de688c60a01 276 Pfam PF01614 Bacterial transcriptional regulator 147 270 3.5E-40 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal PAJ_RS18835 a9d0fb6968ef82b650729de688c60a01 276 PANTHER PTHR30136:SF3 1 275 1.2E-101 T 14-09-2016 PAJ_RS18835 a9d0fb6968ef82b650729de688c60a01 276 PANTHER PTHR30136 1 275 1.2E-101 T 14-09-2016 PAJ_RS18835 a9d0fb6968ef82b650729de688c60a01 276 Pfam PF09339 IclR helix-turn-helix domain 29 80 7.1E-18 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS18835 a9d0fb6968ef82b650729de688c60a01 276 Gene3D G3DSA:3.30.450.40 94 273 2.8E-57 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS18835 a9d0fb6968ef82b650729de688c60a01 276 SUPERFAMILY SSF55781 92 273 7.85E-51 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 6 554 51.405 T 14-09-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 SUPERFAMILY SSF51569 20 328 2.75E-97 T 14-09-2016 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 Pfam PF00682 HMGL-like 31 311 2.3E-70 T 14-09-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 SUPERFAMILY SSF110921 448 551 1.31E-24 T 14-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 Gene3D G3DSA:3.20.20.70 8 394 5.4E-144 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 38 54 - T 14-09-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 PANTHER PTHR10277:SF28 1 561 3.1E-287 T 14-09-2016 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 SUPERFAMILY SSF89000 388 436 2.94E-13 T 14-09-2016 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 Pfam PF08502 LeuA allosteric (dimerisation) domain 422 552 3.2E-19 T 14-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 5 550 6.4E-233 T 14-09-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 SMART SM00917 422 553 1.7E-20 T 14-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 241 254 - T 14-09-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS06550 b328fa292f909ee379094c720f52f90d 571 PANTHER PTHR10277 1 561 3.1E-287 T 14-09-2016 PAJ_RS19760 4eed425c7204611dee670a63b4fcf759 193 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 4 187 28.719 T 14-09-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 PAJ_RS19760 4eed425c7204611dee670a63b4fcf759 193 PANTHER PTHR37481:SF1 2 190 9.8E-64 T 14-09-2016 PAJ_RS19760 4eed425c7204611dee670a63b4fcf759 193 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 6 184 1.5E-56 T 14-09-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 PAJ_RS19760 4eed425c7204611dee670a63b4fcf759 193 PANTHER PTHR37481 2 190 9.8E-64 T 14-09-2016 PAJ_RS19760 4eed425c7204611dee670a63b4fcf759 193 PIRSF PIRSF028513 1 188 1.0E-39 T 14-09-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 PAJ_RS19760 4eed425c7204611dee670a63b4fcf759 193 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 13 185 7.8E-57 T 14-09-2016 IPR010664 Lipopolysaccharide assembly, LptC-related PAJ_RS07105 284a9e9ec6c39a4baa61856f3d319ae4 131 Gene3D G3DSA:3.90.1590.10 3 104 2.7E-19 T 14-09-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 PAJ_RS07105 284a9e9ec6c39a4baa61856f3d319ae4 131 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 29 102 1.8E-9 T 14-09-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 PAJ_RS07105 284a9e9ec6c39a4baa61856f3d319ae4 131 PANTHER PTHR28620 9 119 1.8E-36 T 14-09-2016 PAJ_RS07105 284a9e9ec6c39a4baa61856f3d319ae4 131 SUPERFAMILY SSF51316 5 122 8.68E-30 T 14-09-2016 IPR011057 Mss4-like PAJ_RS06240 4d49b4e9fab96887cc99125f456dacbc 318 SUPERFAMILY SSF53822 23 303 3.61E-69 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS06240 4d49b4e9fab96887cc99125f456dacbc 318 Gene3D G3DSA:3.40.50.2300 140 305 7.8E-45 T 14-09-2016 PAJ_RS06240 4d49b4e9fab96887cc99125f456dacbc 318 PANTHER PTHR32196:SF20 1 280 3.2E-152 T 14-09-2016 PAJ_RS06240 4d49b4e9fab96887cc99125f456dacbc 318 Pfam PF13407 Periplasmic binding protein domain 26 274 2.6E-45 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS06240 4d49b4e9fab96887cc99125f456dacbc 318 PANTHER PTHR32196 1 280 3.2E-152 T 14-09-2016 PAJ_RS06240 4d49b4e9fab96887cc99125f456dacbc 318 Gene3D G3DSA:3.40.50.2300 24 139 1.8E-28 T 14-09-2016 PAJ_RS12915 763e30a42ce884b3412142bc0cd36e35 245 Pfam PF00005 ABC transporter 21 168 1.5E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS12915 763e30a42ce884b3412142bc0cd36e35 245 SUPERFAMILY SSF52540 6 238 9.91E-77 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12915 763e30a42ce884b3412142bc0cd36e35 245 PANTHER PTHR24220:SF474 7 245 1.7E-127 T 14-09-2016 PAJ_RS12915 763e30a42ce884b3412142bc0cd36e35 245 PIRSF PIRSF039085 2 244 6.3E-105 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PAJ_RS12915 763e30a42ce884b3412142bc0cd36e35 245 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS12915 763e30a42ce884b3412142bc0cd36e35 245 SMART SM00382 30 216 1.2E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS12915 763e30a42ce884b3412142bc0cd36e35 245 Gene3D G3DSA:3.40.50.300 5 240 2.2E-82 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12915 763e30a42ce884b3412142bc0cd36e35 245 PANTHER PTHR24220 7 245 1.7E-127 T 14-09-2016 PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 Gene3D G3DSA:3.40.50.300 15 49 4.5E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 37.697 T 14-09-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 SUPERFAMILY SSF52540 3 190 9.27E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 PANTHER PTHR23117:SF13 1 204 2.2E-106 T 14-09-2016 PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 1.6E-75 T 14-09-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 Pfam PF00625 Guanylate kinase 5 186 8.3E-67 T 14-09-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 Gene3D G3DSA:3.30.63.10 50 87 1.8E-28 T 14-09-2016 PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 14-09-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 Gene3D G3DSA:3.40.50.300 88 204 1.8E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 Gene3D G3DSA:3.40.50.300 1 14 1.8E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 SMART SM00072 3 187 1.1E-81 T 14-09-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PAJ_RS17390 4fa5508f334e984dd80ca35b3a48ef62 207 PANTHER PTHR23117 1 204 2.2E-106 T 14-09-2016 PAJ_RS11495 e200ec3d58854d7b0d54d782b2e641ec 490 PANTHER PTHR11785:SF25 1 484 0.0 T 14-09-2016 PAJ_RS11495 e200ec3d58854d7b0d54d782b2e641ec 490 PIRSF PIRSF006060 17 488 8.4E-67 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS11495 e200ec3d58854d7b0d54d782b2e641ec 490 PANTHER PTHR11785 1 484 0.0 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS11495 e200ec3d58854d7b0d54d782b2e641ec 490 Pfam PF00324 Amino acid permease 34 471 7.4E-124 T 14-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PAJ_RS11495 e200ec3d58854d7b0d54d782b2e641ec 490 ProSitePatterns PS00218 Amino acid permeases signature. 59 89 - T 14-09-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PAJ_RS16280 1d8e70da518e3615eaec79bfcc24ac99 164 Gene3D G3DSA:3.40.630.30 2 162 1.2E-35 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS16280 1d8e70da518e3615eaec79bfcc24ac99 164 Pfam PF00583 Acetyltransferase (GNAT) family 58 138 2.6E-16 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS16280 1d8e70da518e3615eaec79bfcc24ac99 164 PANTHER PTHR23091:SF262 1 162 1.6E-52 T 14-09-2016 PAJ_RS16280 1d8e70da518e3615eaec79bfcc24ac99 164 PANTHER PTHR23091 1 162 1.6E-52 T 14-09-2016 PAJ_RS16280 1d8e70da518e3615eaec79bfcc24ac99 164 SUPERFAMILY SSF55729 3 162 1.1E-35 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS09260 63bd210d60c957b14aa50ee1414aca41 291 Gene3D G3DSA:1.10.101.10 17 74 1.6E-9 T 14-09-2016 IPR002477 Peptidoglycan binding-like PAJ_RS09260 63bd210d60c957b14aa50ee1414aca41 291 Pfam PF01471 Putative peptidoglycan binding domain 17 63 4.3E-7 T 14-09-2016 IPR002477 Peptidoglycan binding-like PAJ_RS09260 63bd210d60c957b14aa50ee1414aca41 291 SUPERFAMILY SSF47090 15 64 7.06E-9 T 14-09-2016 IPR002477 Peptidoglycan binding-like PAJ_RS09260 63bd210d60c957b14aa50ee1414aca41 291 PANTHER PTHR11544 98 246 3.0E-24 T 14-09-2016 PAJ_RS09260 63bd210d60c957b14aa50ee1414aca41 291 Pfam PF16754 Bacterial toxin homologue of phage lysozyme, C-term 129 246 1.3E-6 T 14-09-2016 IPR031922 Bacterial toxin homologue of phage lysozyme, C-terminal PAJ_RS09260 63bd210d60c957b14aa50ee1414aca41 291 PANTHER PTHR11544:SF59 98 246 3.0E-24 T 14-09-2016 PAJ_RS09595 ee4a39a56172bc901f5d4a1c738a8c7b 208 PANTHER PTHR30086 2 206 3.5E-24 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS09595 ee4a39a56172bc901f5d4a1c738a8c7b 208 Pfam PF01810 LysE type translocator 18 205 4.7E-24 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS05060 d646a09fd4354d52ccd2aae2005dec68 231 Pfam PF01965 DJ-1/PfpI family 7 168 7.8E-30 T 14-09-2016 IPR002818 DJ-1/PfpI PAJ_RS05060 d646a09fd4354d52ccd2aae2005dec68 231 Gene3D G3DSA:3.40.50.880 8 218 8.9E-69 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS05060 d646a09fd4354d52ccd2aae2005dec68 231 PANTHER PTHR11019:SF25 9 163 2.5E-44 T 14-09-2016 PAJ_RS05060 d646a09fd4354d52ccd2aae2005dec68 231 SUPERFAMILY SSF52317 7 191 6.48E-52 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS05060 d646a09fd4354d52ccd2aae2005dec68 231 PANTHER PTHR11019 9 163 2.5E-44 T 14-09-2016 PAJ_RS14665 0eaaa9fea29df38b12b190c76064d619 63 Gene3D G3DSA:1.10.1220.10 15 57 1.1E-5 T 14-09-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 PAJ_RS14665 0eaaa9fea29df38b12b190c76064d619 63 Pfam PF05534 HicB family 17 46 7.2E-5 T 14-09-2016 IPR008651 Uncharacterised protein family HicB PAJ_RS14665 0eaaa9fea29df38b12b190c76064d619 63 SUPERFAMILY SSF47598 14 59 4.45E-9 T 14-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 SMART SM00304 81 135 3.6E-7 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 SMART SM00387 244 355 4.3E-26 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 SUPERFAMILY SSF158472 83 132 3.53E-6 T 14-09-2016 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 Pfam PF00672 HAMP domain 62 131 8.3E-12 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 Gene3D G3DSA:3.30.565.10 202 352 2.6E-33 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 PANTHER PTHR24423 75 352 3.7E-61 T 14-09-2016 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 PANTHER PTHR24423 3 9 3.7E-61 T 14-09-2016 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 Gene3D G3DSA:1.10.287.130 126 191 2.3E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 Pfam PF00512 His Kinase A (phospho-acceptor) domain 140 198 1.4E-7 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 308 5.3E-14 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 352 5.3E-14 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 280 294 5.3E-14 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 315 333 5.3E-14 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 245 353 3.0E-17 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 PANTHER PTHR24423:SF508 75 352 3.7E-61 T 14-09-2016 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 SMART SM00388 136 200 8.1E-10 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 PANTHER PTHR24423:SF508 3 9 3.7E-61 T 14-09-2016 PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 SUPERFAMILY SSF55874 190 352 5.5E-33 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS12395 027d8dbaa13353c21f12bb00fc3d6d51 355 SUPERFAMILY SSF47384 119 198 3.53E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 Gene3D G3DSA:2.40.160.10 22 380 1.5E-101 T 14-09-2016 IPR023614 Porin domain PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PANTHER PTHR34501 2 380 1.5E-210 T 14-09-2016 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PANTHER PTHR34501:SF3 2 380 1.5E-210 T 14-09-2016 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 4.2E-17 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 243 255 4.2E-17 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 335 352 4.2E-17 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 154 165 4.2E-17 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 97 107 4.2E-17 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 249 266 1.4E-68 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 1.4E-68 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 1.4E-68 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 1.4E-68 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 152 174 1.4E-68 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 290 309 1.4E-68 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 335 351 - T 14-09-2016 IPR013793 Porin, Gram-negative type, conserved site PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 SUPERFAMILY SSF56935 22 380 6.28E-77 T 14-09-2016 PAJ_RS01170 e4f91785477f462f8be99dce3523fc38 380 Pfam PF00267 Gram-negative porin 27 380 9.3E-141 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS09640 7c25a83f6a55513ae5eb2704bc320250 418 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 9 418 0.0 T 14-09-2016 PAJ_RS09640 7c25a83f6a55513ae5eb2704bc320250 418 PANTHER PTHR30268 1 418 2.2E-210 T 14-09-2016 PAJ_RS09640 7c25a83f6a55513ae5eb2704bc320250 418 Hamap MF_00541 L-rhamnose isomerase [rhaA]. 1 418 258.71 T 14-09-2016 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14|UniPathway: UPA00541 PAJ_RS09640 7c25a83f6a55513ae5eb2704bc320250 418 SUPERFAMILY SSF51658 5 418 3.98E-79 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS09640 7c25a83f6a55513ae5eb2704bc320250 418 Gene3D G3DSA:3.20.20.150 3 418 2.1E-217 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS09640 7c25a83f6a55513ae5eb2704bc320250 418 TIGRFAM TIGR01748 rhaA: L-rhamnose isomerase 5 418 2.8E-224 T 14-09-2016 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14|UniPathway: UPA00541 PAJ_RS09640 7c25a83f6a55513ae5eb2704bc320250 418 Pfam PF06134 L-rhamnose isomerase (RhaA) 5 418 1.9E-217 T 14-09-2016 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14|UniPathway: UPA00541 PAJ_RS08795 f8f0b78f66232353cb6c75d6132aa8b3 1230 SUPERFAMILY SSF53448 582 742 1.34E-45 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS08795 f8f0b78f66232353cb6c75d6132aa8b3 1230 SUPERFAMILY SSF53448 780 850 1.34E-45 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS08795 f8f0b78f66232353cb6c75d6132aa8b3 1230 Pfam PF00535 Glycosyl transferase family 2 620 797 1.1E-18 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS08795 f8f0b78f66232353cb6c75d6132aa8b3 1230 SUPERFAMILY SSF53448 435 562 3.71E-5 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS08795 f8f0b78f66232353cb6c75d6132aa8b3 1230 Gene3D G3DSA:3.90.550.10 617 877 1.7E-41 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS08795 f8f0b78f66232353cb6c75d6132aa8b3 1230 PANTHER PTHR22916 569 889 1.4E-33 T 14-09-2016 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 PANTHER PTHR11019:SF75 18 277 6.0E-58 T 14-09-2016 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 Gene3D G3DSA:1.10.10.60 169 224 6.3E-16 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 SUPERFAMILY SSF46689 171 220 1.19E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 224 265 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 SMART SM00342 187 269 6.4E-24 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 Pfam PF02311 AraC-like ligand binding domain 24 152 6.7E-23 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 PANTHER PTHR11019 18 277 6.0E-58 T 14-09-2016 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 Gene3D G3DSA:1.10.10.60 225 272 2.4E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 Pfam PF12833 Helix-turn-helix domain 193 271 3.9E-19 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 SUPERFAMILY SSF46689 223 272 1.39E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 SUPERFAMILY SSF51215 32 154 5.36E-19 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS19015 9d8c046cc3bfbd78a9ccc02be09fa19d 280 Gene3D G3DSA:2.60.120.280 32 153 2.1E-15 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 Gene3D G3DSA:1.10.10.10 1 118 4.4E-44 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 Pfam PF03459 TOBE domain 193 254 1.5E-7 T 14-09-2016 IPR005116 Transport-associated OB, type 1 PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 Pfam PF03459 TOBE domain 124 187 4.9E-10 T 14-09-2016 IPR005116 Transport-associated OB, type 1 PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 PANTHER PTHR30432 1 260 6.7E-61 T 14-09-2016 PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 PIRSF PIRSF005763 1 260 1.0E-86 T 14-09-2016 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 SUPERFAMILY SSF46785 2 103 1.18E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 SUPERFAMILY SSF50331 126 256 6.24E-19 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 16 112 3.5E-36 T 14-09-2016 IPR003725 Molybdenum-binding protein ModE, N-terminal PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 83 2.8E-13 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 122 189 4.2E-22 T 14-09-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 Gene3D G3DSA:2.40.50.100 190 252 7.6E-17 T 14-09-2016 PAJ_RS02910 812f5fe51460323cd34b3ae367a0bf61 260 Gene3D G3DSA:2.40.50.100 119 185 6.7E-27 T 14-09-2016 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 43 482 2.0E-163 T 14-09-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PRINTS PR00834 HtrA/DegQ protease family signature 195 219 3.0E-59 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PRINTS PR00834 HtrA/DegQ protease family signature 230 247 3.0E-59 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PRINTS PR00834 HtrA/DegQ protease family signature 133 145 3.0E-59 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PRINTS PR00834 HtrA/DegQ protease family signature 154 174 3.0E-59 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PRINTS PR00834 HtrA/DegQ protease family signature 252 269 3.0E-59 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PRINTS PR00834 HtrA/DegQ protease family signature 338 350 3.0E-59 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 SUPERFAMILY SSF50156 256 381 1.84E-23 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PANTHER PTHR22939 84 92 8.3E-241 T 14-09-2016 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 SUPERFAMILY SSF50156 415 480 3.29E-15 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 Gene3D G3DSA:2.30.42.10 300 397 9.1E-29 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 Gene3D G3DSA:2.40.10.10 41 187 1.3E-36 T 14-09-2016 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 Gene3D G3DSA:2.30.42.10 416 481 7.8E-19 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PANTHER PTHR22939:SF84 114 426 8.3E-241 T 14-09-2016 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PANTHER PTHR22939 114 426 8.3E-241 T 14-09-2016 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PANTHER PTHR22939 34 64 8.3E-241 T 14-09-2016 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 SUPERFAMILY SSF50494 41 65 5.03E-65 T 14-09-2016 IPR009003 Peptidase S1, PA clan PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 SUPERFAMILY SSF50494 112 294 5.03E-65 T 14-09-2016 IPR009003 Peptidase S1, PA clan PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 Gene3D G3DSA:2.40.10.10 188 299 9.9E-44 T 14-09-2016 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PANTHER PTHR22939:SF84 84 92 8.3E-241 T 14-09-2016 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 SMART SM00228 402 476 7.5E-11 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 SMART SM00228 298 380 2.3E-13 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 Pfam PF13365 Trypsin-like peptidase domain 123 259 1.7E-32 T 14-09-2016 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 405 473 3.4E-12 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 Pfam PF13180 PDZ domain 300 389 2.1E-14 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00655 f445c3e7501aa379991daacd9864709b 484 PANTHER PTHR22939:SF84 34 64 8.3E-241 T 14-09-2016 PAJ_RS10180 9ea8f275eb9460ecfc6766d0ca6683dc 303 Gene3D G3DSA:1.10.10.10 1 84 3.0E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10180 9ea8f275eb9460ecfc6766d0ca6683dc 303 Gene3D G3DSA:3.40.190.10 210 256 3.5E-4 T 14-09-2016 PAJ_RS10180 9ea8f275eb9460ecfc6766d0ca6683dc 303 PANTHER PTHR30126 1 300 8.2E-117 T 14-09-2016 PAJ_RS10180 9ea8f275eb9460ecfc6766d0ca6683dc 303 PANTHER PTHR30126:SF31 1 300 8.2E-117 T 14-09-2016 PAJ_RS10180 9ea8f275eb9460ecfc6766d0ca6683dc 303 SUPERFAMILY SSF53850 86 290 2.44E-34 T 14-09-2016 PAJ_RS10180 9ea8f275eb9460ecfc6766d0ca6683dc 303 Gene3D G3DSA:3.40.190.10 85 209 1.2E-27 T 14-09-2016 PAJ_RS10180 9ea8f275eb9460ecfc6766d0ca6683dc 303 Pfam PF03466 LysR substrate binding domain 85 284 8.4E-37 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS10180 9ea8f275eb9460ecfc6766d0ca6683dc 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 8.1E-17 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS10180 9ea8f275eb9460ecfc6766d0ca6683dc 303 SUPERFAMILY SSF46785 1 109 3.4E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15970 384e49aac6195933d28f12506731ec44 325 PANTHER PTHR30024 8 319 3.2E-111 T 14-09-2016 PAJ_RS15970 384e49aac6195933d28f12506731ec44 325 SUPERFAMILY SSF53850 34 304 8.34E-45 T 14-09-2016 PAJ_RS15970 384e49aac6195933d28f12506731ec44 325 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 25 319 1.9E-140 T 14-09-2016 IPR010068 Periplasmic binding protein TauA GO:0015734|GO:0042597 PAJ_RS15970 384e49aac6195933d28f12506731ec44 325 SMART SM00062 24 239 3.3E-23 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS15970 384e49aac6195933d28f12506731ec44 325 Gene3D G3DSA:3.40.190.10 66 101 2.1E-5 T 14-09-2016 PAJ_RS15970 384e49aac6195933d28f12506731ec44 325 Gene3D G3DSA:3.40.190.10 214 253 2.1E-5 T 14-09-2016 PAJ_RS15970 384e49aac6195933d28f12506731ec44 325 PANTHER PTHR30024:SF17 8 319 3.2E-111 T 14-09-2016 PAJ_RS15970 384e49aac6195933d28f12506731ec44 325 Gene3D G3DSA:3.40.190.10 106 213 5.7E-22 T 14-09-2016 PAJ_RS15970 384e49aac6195933d28f12506731ec44 325 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 24 230 5.8E-23 T 14-09-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 PAJ_RS07310 e605f976fdd4182afc0964d95a9a6ca5 446 PANTHER PTHR39479 1 445 1.3E-257 T 14-09-2016 PAJ_RS07310 e605f976fdd4182afc0964d95a9a6ca5 446 Pfam PF07063 Domain of unknown function (DUF1338) 10 399 2.8E-117 T 14-09-2016 IPR009770 Domain of unknown function DUF1338 PAJ_RS07310 e605f976fdd4182afc0964d95a9a6ca5 446 PANTHER PTHR39479:SF2 1 445 1.3E-257 T 14-09-2016 PAJ_RS07310 e605f976fdd4182afc0964d95a9a6ca5 446 SMART SM01150 11 399 5.1E-221 T 14-09-2016 IPR009770 Domain of unknown function DUF1338 PAJ_RS19855 7894a2b372d6e7cf1474b2632a2e746b 97 Gene3D G3DSA:3.30.110.60 1 94 3.5E-34 T 14-09-2016 IPR001890 RNA-binding, CRM domain GO:0003723 PAJ_RS19855 7894a2b372d6e7cf1474b2632a2e746b 97 SMART SM01103 3 86 3.2E-41 T 14-09-2016 IPR001890 RNA-binding, CRM domain GO:0003723 PAJ_RS19855 7894a2b372d6e7cf1474b2632a2e746b 97 SUPERFAMILY SSF75471 1 94 7.06E-31 T 14-09-2016 IPR001890 RNA-binding, CRM domain GO:0003723 PAJ_RS19855 7894a2b372d6e7cf1474b2632a2e746b 97 PANTHER PTHR31846 1 97 1.1E-40 T 14-09-2016 PAJ_RS19855 7894a2b372d6e7cf1474b2632a2e746b 97 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 97 2.0E-40 T 14-09-2016 IPR017924 RNA-binding protein YhbY GO:0003723 PAJ_RS19855 7894a2b372d6e7cf1474b2632a2e746b 97 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 1.5E-22 T 14-09-2016 IPR001890 RNA-binding, CRM domain GO:0003723 PAJ_RS19855 7894a2b372d6e7cf1474b2632a2e746b 97 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 97 1.0E-29 T 14-09-2016 IPR001890 RNA-binding, CRM domain GO:0003723 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 Pfam PF02203 Tar ligand binding domain homologue 3 172 1.7E-14 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 Gene3D G3DSA:1.10.287.950 286 487 7.7E-60 T 14-09-2016 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 SMART SM00283 268 515 1.5E-88 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 Pfam PF00672 HAMP domain 196 264 3.0E-6 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 514 1.9E-59 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 PANTHER PTHR32089 147 518 1.1E-166 T 14-09-2016 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 PANTHER PTHR32089:SF48 147 518 1.1E-166 T 14-09-2016 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 293 315 - T 14-09-2016 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 SMART SM00304 215 267 0.0034 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 443 472 1.0E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 1.0E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 289 318 1.0E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 366 393 1.0E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 395 424 1.0E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07295 141dbd6171c69c3d881bcb4c50b37369 556 SUPERFAMILY SSF58104 235 517 4.71E-72 T 14-09-2016 PAJ_RS17585 50b0478e8a8a8e6ba87b27141e928bb6 498 Pfam PF07728 AAA domain (dynein-related subfamily) 41 171 1.9E-23 T 14-09-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 PAJ_RS17585 50b0478e8a8a8e6ba87b27141e928bb6 498 Gene3D G3DSA:3.40.50.300 25 183 2.4E-16 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17585 50b0478e8a8a8e6ba87b27141e928bb6 498 SUPERFAMILY SSF52540 22 292 2.85E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17585 50b0478e8a8a8e6ba87b27141e928bb6 498 SMART SM00382 38 187 5.1E-5 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17585 50b0478e8a8a8e6ba87b27141e928bb6 498 Pfam PF12592 Protein of unknown function (DUF3763) 444 497 3.7E-21 T 14-09-2016 IPR022547 ATPase, RavA, C-terminal GO:0016820 PAJ_RS17585 50b0478e8a8a8e6ba87b27141e928bb6 498 PANTHER PTHR32204 7 497 5.8E-135 T 14-09-2016 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 PANTHER PTHR30534 3 330 3.0E-109 T 14-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 224 244 2.0E-74 T 14-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 193 218 2.0E-74 T 14-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 32 58 2.0E-74 T 14-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 2.0E-74 T 14-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 270 296 2.0E-74 T 14-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 3 19 2.0E-74 T 14-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 113 136 2.0E-74 T 14-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 2 327 8.6E-143 T 14-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 PANTHER PTHR30534:SF0 3 330 3.0E-109 T 14-09-2016 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 Pfam PF14841 FliG middle domain 115 185 3.6E-24 T 14-09-2016 IPR032779 Flagellar motor switch protein FliG, middle domain PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 Pfam PF14842 FliG N-terminal domain 3 102 2.6E-32 T 14-09-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 PIRSF PIRSF003161 1 330 7.5E-117 T 14-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 SUPERFAMILY SSF48029 4 103 1.14E-21 T 14-09-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 SUPERFAMILY SSF48029 114 323 2.09E-61 T 14-09-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 Pfam PF01706 FliG C-terminal domain 217 322 3.0E-36 T 14-09-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 Gene3D G3DSA:1.10.220.30 73 182 5.5E-29 T 14-09-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 Gene3D G3DSA:1.10.220.30 193 329 6.1E-40 T 14-09-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical PAJ_RS08880 d888e2cb4192721545653ecf31fceda0 330 Gene3D G3DSA:1.10.220.30 5 71 1.6E-17 T 14-09-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 Gene3D G3DSA:1.10.1020.10 60 156 3.5E-35 T 14-09-2016 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 SUPERFAMILY SSF53335 5 268 2.57E-74 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 2.3E-16 T 14-09-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 2.3E-16 T 14-09-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 2.3E-16 T 14-09-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 2.3E-16 T 14-09-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 PANTHER PTHR30481 2 269 3.0E-122 T 14-09-2016 PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 PANTHER PTHR30481:SF3 2 269 3.0E-122 T 14-09-2016 PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 PIRSF PIRSF000398 1 270 8.8E-66 T 14-09-2016 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 Gene3D G3DSA:3.40.50.150 160 267 1.7E-50 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 Gene3D G3DSA:3.40.50.150 1 59 1.7E-50 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 252 2.6E-72 T 14-09-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 268 1.9E-95 T 14-09-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 PAJ_RS16060 3108f49e20075858a69f9cb766895183 270 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 ProSitePatterns PS00517 Ribonuclease III family signature. 38 46 - T 14-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 Gene3D G3DSA:3.30.160.20 153 223 1.1E-27 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 Pfam PF00035 Double-stranded RNA binding motif 156 223 4.5E-14 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 Gene3D G3DSA:1.10.1520.10 6 148 1.3E-47 T 14-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 PANTHER PTHR11207 6 223 5.4E-110 T 14-09-2016 PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 SUPERFAMILY SSF69065 5 159 6.8E-50 T 14-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 SUPERFAMILY SSF54768 109 225 2.15E-27 T 14-09-2016 PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 222 9.5E-73 T 14-09-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 SMART SM00358 156 224 1.3E-22 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 Hamap MF_00104 Ribonuclease 3 [rnc]. 9 220 29.257 T 14-09-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 Pfam PF14622 Ribonuclease-III-like 20 141 2.0E-33 T 14-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 PAJ_RS12040 b26da2aeca18f44ea7fb6051aff15cc2 226 SMART SM00535 21 149 6.6E-59 T 14-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 PAJ_RS11355 04676d45ad77ac64b10e986355e9b73c 362 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS11355 04676d45ad77ac64b10e986355e9b73c 362 SUPERFAMILY SSF50331 239 346 1.59E-11 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS11355 04676d45ad77ac64b10e986355e9b73c 362 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 242 8.5E-126 T 14-09-2016 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 PAJ_RS11355 04676d45ad77ac64b10e986355e9b73c 362 PANTHER PTHR24220:SF123 4 289 1.5E-144 T 14-09-2016 PAJ_RS11355 04676d45ad77ac64b10e986355e9b73c 362 Pfam PF00005 ABC transporter 18 164 9.3E-38 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS11355 04676d45ad77ac64b10e986355e9b73c 362 PANTHER PTHR24220 4 289 1.5E-144 T 14-09-2016 PAJ_RS11355 04676d45ad77ac64b10e986355e9b73c 362 SMART SM00382 27 214 4.0E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS11355 04676d45ad77ac64b10e986355e9b73c 362 Gene3D G3DSA:3.40.50.300 3 246 1.9E-83 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11355 04676d45ad77ac64b10e986355e9b73c 362 SUPERFAMILY SSF52540 3 246 1.77E-87 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00795 061e37a69ba3705b2a134d73b6102f61 86 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 9 83 8.3E-28 T 14-09-2016 IPR009778 Modulator of Rho-dependent transcription termination PAJ_RS00795 061e37a69ba3705b2a134d73b6102f61 86 SUPERFAMILY SSF101744 1 85 2.41E-28 T 14-09-2016 IPR023534 Rof/RNase P-like PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 PANTHER PTHR23115 371 721 1.4E-212 T 14-09-2016 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 PANTHER PTHR23115 746 893 1.4E-212 T 14-09-2016 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 SUPERFAMILY SSF46955 3 50 6.96E-13 T 14-09-2016 IPR009061 Putative DNA-binding domain PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Gene3D G3DSA:3.40.50.10050 693 772 3.1E-24 T 14-09-2016 IPR023115 Translation initiation factor IF- 2, domain 3 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 8.1E-8 T 14-09-2016 IPR006847 Translation initiation factor IF-2, N-terminal PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 318 368 1.7E-13 T 14-09-2016 IPR006847 Translation initiation factor IF-2, N-terminal PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Gene3D G3DSA:2.40.30.10 795 892 9.2E-40 T 14-09-2016 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Gene3D G3DSA:3.40.50.300 387 553 5.4E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 PANTHER PTHR23115:SF184 371 721 1.4E-212 T 14-09-2016 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 PANTHER PTHR23115:SF184 746 893 1.4E-212 T 14-09-2016 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 SUPERFAMILY SSF50447 567 648 2.5E-22 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 396 552 1.8E-34 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Pfam PF11987 Translation-initiation factor 2 678 783 4.9E-36 T 14-09-2016 IPR023115 Translation initiation factor IF- 2, domain 3 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 ProSitePatterns PS01176 Initiation factor 2 signature. 844 866 - T 14-09-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Gene3D G3DSA:3.30.56.50 2 50 1.7E-23 T 14-09-2016 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 891 17.573 T 14-09-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Pfam PF00009 Elongation factor Tu GTP binding domain 397 554 4.3E-33 T 14-09-2016 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 SUPERFAMILY SSF52156 671 800 1.83E-37 T 14-09-2016 IPR023115 Translation initiation factor IF- 2, domain 3 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 SUPERFAMILY SSF50447 794 891 3.95E-34 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 57 93 1.1E-15 T 14-09-2016 IPR013575 Initiation factor 2 associated domain, bacterial PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 310 893 1.1E-292 T 14-09-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 Gene3D G3DSA:2.40.30.10 566 657 2.5E-20 T 14-09-2016 PAJ_RS19905 100b80849533ad010b9dcc905b57bca6 894 SUPERFAMILY SSF52540 391 559 4.75E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13290 53d1b97f6ffcb7db35ab37502e75d791 217 PANTHER PTHR20855 15 217 2.0E-69 T 14-09-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 PAJ_RS13290 53d1b97f6ffcb7db35ab37502e75d791 217 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 15 216 7.0E-69 T 14-09-2016 IPR005744 Hly-III GO:0016021|GO:0019835 PAJ_RS13290 53d1b97f6ffcb7db35ab37502e75d791 217 Pfam PF03006 Haemolysin-III related 14 209 2.5E-39 T 14-09-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 PAJ_RS13290 53d1b97f6ffcb7db35ab37502e75d791 217 PANTHER PTHR20855:SF3 15 217 2.0E-69 T 14-09-2016 IPR005744 Hly-III GO:0016021|GO:0019835 PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 PANTHER PTHR11751:SF355 1 76 4.4E-49 T 14-09-2016 PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 SMART SM00345 15 74 4.8E-25 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 Pfam PF07729 FCD domain 99 226 4.4E-19 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 SMART SM00895 99 227 7.2E-18 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 SUPERFAMILY SSF46785 8 77 2.67E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 SUPERFAMILY SSF48008 95 234 3.92E-21 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 PANTHER PTHR11751:SF355 92 115 4.4E-49 T 14-09-2016 PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 Gene3D G3DSA:1.20.120.530 95 238 7.9E-20 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 Gene3D G3DSA:1.10.10.10 7 77 9.1E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 PANTHER PTHR11751 92 115 4.4E-49 T 14-09-2016 PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 8.4E-23 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 3.0E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 3.0E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS00440 961f6a45fc7ce57d4d8be890638503d0 254 PANTHER PTHR11751 1 76 4.4E-49 T 14-09-2016 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 PANTHER PTHR20857:SF19 31 274 4.0E-78 T 14-09-2016 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 Gene3D G3DSA:3.40.1190.20 23 274 4.5E-84 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 32 275 8.2E-87 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 110 127 1.4E-38 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 140 154 1.4E-38 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 53 74 1.4E-38 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 40 47 1.4E-38 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 184 201 1.4E-38 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 84 92 1.4E-38 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 SUPERFAMILY SSF53613 31 273 3.27E-59 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 PIRSF PIRSF000513 26 279 4.5E-94 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 34 280 30.435 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 Pfam PF02110 Hydroxyethylthiazole kinase family 32 274 9.3E-90 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PAJ_RS10070 e044790328ae7763614067ec5f97a1e6 280 PANTHER PTHR20857 31 274 4.0E-78 T 14-09-2016 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 Gene3D G3DSA:1.25.40.10 442 807 3.5E-91 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 SUPERFAMILY SSF52540 9 226 1.92E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 836 850 3.8E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 866 878 3.8E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 850 866 3.8E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 Gene3D G3DSA:3.40.50.300 8 158 6.9E-7 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 Pfam PF00196 Bacterial regulatory proteins, luxR family 835 888 5.6E-19 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 Gene3D G3DSA:1.10.10.10 834 891 4.7E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 ProSitePatterns PS00622 LuxR-type HTH domain signature. 850 877 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 PANTHER PTHR26402 810 897 2.6E-15 T 14-09-2016 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 PANTHER PTHR26402 78 100 2.6E-15 T 14-09-2016 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 PANTHER PTHR26402:SF567 810 897 2.6E-15 T 14-09-2016 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 PANTHER PTHR26402:SF567 78 100 2.6E-15 T 14-09-2016 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 SMART SM00421 833 890 5.8E-21 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 SUPERFAMILY SSF48452 440 803 5.24E-141 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 SUPERFAMILY SSF46894 827 891 3.33E-17 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS06885 6654f4441a767be9a3515c1daf383b7d 900 Hamap MF_01247 HTH-type transcriptional regulator MalT [malT]. 1 899 36.032 T 14-09-2016 IPR023768 Transcriptional regulator HTH-type, MalT PAJ_RS08325 9cd64f5666ff3826f266e5a042038a81 212 PANTHER PTHR30246 1 208 7.5E-130 T 14-09-2016 PAJ_RS08325 9cd64f5666ff3826f266e5a042038a81 212 Pfam PF01081 KDPG and KHG aldolase 9 203 6.6E-91 T 14-09-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 PAJ_RS08325 9cd64f5666ff3826f266e5a042038a81 212 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 14-09-2016 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 PAJ_RS08325 9cd64f5666ff3826f266e5a042038a81 212 PANTHER PTHR30246:SF0 1 208 7.5E-130 T 14-09-2016 PAJ_RS08325 9cd64f5666ff3826f266e5a042038a81 212 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 14-09-2016 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562|UniPathway: UPA00227|UniPathway: UPA00856 PAJ_RS08325 9cd64f5666ff3826f266e5a042038a81 212 SUPERFAMILY SSF51569 3 208 1.17E-69 T 14-09-2016 PAJ_RS08325 9cd64f5666ff3826f266e5a042038a81 212 Gene3D G3DSA:3.20.20.70 2 209 2.0E-78 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS08325 9cd64f5666ff3826f266e5a042038a81 212 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 6.5E-86 T 14-09-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 SUPERFAMILY SSF82866 290 490 1.44E-48 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 SUPERFAMILY SSF82866 825 1048 6.8E-45 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 Gene3D G3DSA:3.30.70.1430 565 646 4.3E-9 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 Gene3D G3DSA:1.20.1640.10 285 499 1.0E-58 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 Gene3D G3DSA:3.30.2090.10 710 775 3.5E-18 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 Gene3D G3DSA:3.30.2090.10 807 827 3.5E-18 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 Gene3D G3DSA:3.30.2090.10 182 268 1.1E-17 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.9E-75 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.9E-75 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.9E-75 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 1.9E-75 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.9E-75 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 1.9E-75 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.9E-75 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.9E-75 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.9E-75 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 SUPERFAMILY SSF82714 710 776 7.19E-14 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 SUPERFAMILY SSF82693 138 182 1.4E-22 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 SUPERFAMILY SSF82693 268 324 1.4E-22 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PANTHER PTHR32063:SF21 812 1065 0.0 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PANTHER PTHR32063:SF21 1 779 0.0 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PANTHER PTHR32063 812 1065 0.0 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 PANTHER PTHR32063 1 779 0.0 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 SUPERFAMILY SSF82714 183 266 2.88E-16 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 SUPERFAMILY SSF82693 40 132 1.57E-23 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 Gene3D G3DSA:1.10.3850.10 832 1046 3.2E-55 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 Gene3D G3DSA:3.30.70.1430 40 141 1.3E-29 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 SUPERFAMILY SSF82693 556 652 2.56E-13 T 14-09-2016 PAJ_RS20025 81f746a6384b6815941ae1d2c7532cd8 1067 Pfam PF00873 AcrB/AcrD/AcrF family 4 1045 0.0 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS03230 bab7666698ebb7d668ea689087cad4dd 239 PANTHER PTHR30133 8 236 7.6E-71 T 14-09-2016 PAJ_RS03230 bab7666698ebb7d668ea689087cad4dd 239 SUPERFAMILY SSF161098 15 216 7.59E-33 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03230 bab7666698ebb7d668ea689087cad4dd 239 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 122 9.1E-16 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS03230 bab7666698ebb7d668ea689087cad4dd 239 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 227 3.6E-15 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03230 bab7666698ebb7d668ea689087cad4dd 239 Gene3D G3DSA:1.10.3720.10 16 227 1.3E-33 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 605 6.8E-28 T 14-09-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 SUPERFAMILY SSF55021 303 381 1.62E-22 T 14-09-2016 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 14-09-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 14-09-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 PANTHER PTHR21499 1 471 3.8E-185 T 14-09-2016 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 SUPERFAMILY SSF55021 383 475 3.36E-23 T 14-09-2016 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 4.5E-145 T 14-09-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 Gene3D G3DSA:3.40.50.720 464 635 7.4E-64 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 Gene3D G3DSA:3.40.1160.10 1 49 9.2E-67 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 Gene3D G3DSA:3.40.1160.10 111 298 9.2E-67 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 SUPERFAMILY SSF53633 1 297 1.16E-71 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 SUPERFAMILY SSF51735 464 636 2.55E-38 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 Gene3D G3DSA:3.30.360.10 636 792 2.4E-56 T 14-09-2016 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 SUPERFAMILY SSF55347 614 798 6.54E-52 T 14-09-2016 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 PANTHER PTHR21499:SF1 1 471 3.8E-185 T 14-09-2016 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 Pfam PF13840 ACT domain 394 456 4.9E-10 T 14-09-2016 IPR027795 GATS-like ACT domain PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 Pfam PF01842 ACT domain 324 376 5.9E-8 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 Pfam PF00696 Amino acid kinase family 2 284 1.3E-45 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 PIRSF PIRSF000727 1 818 0.0 T 14-09-2016 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00050|UniPathway: UPA00051|UniPathway: UPA00051 PAJ_RS00005 c567e989ff8ff84444142e6d6a9c416e 820 Pfam PF00742 Homoserine dehydrogenase 614 811 4.0E-48 T 14-09-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS11180 8b30e92128b213ab1f0e823881f5d798 242 Gene3D G3DSA:2.20.25.10 204 242 9.3E-14 T 14-09-2016 PAJ_RS11180 8b30e92128b213ab1f0e823881f5d798 242 Pfam PF00072 Response regulator receiver domain 4 112 2.0E-22 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS11180 8b30e92128b213ab1f0e823881f5d798 242 PANTHER PTHR26402:SF472 1 181 1.6E-40 T 14-09-2016 PAJ_RS11180 8b30e92128b213ab1f0e823881f5d798 242 Gene3D G3DSA:3.40.50.2300 2 124 1.1E-27 T 14-09-2016 PAJ_RS11180 8b30e92128b213ab1f0e823881f5d798 242 SMART SM00448 1 112 3.7E-20 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS11180 8b30e92128b213ab1f0e823881f5d798 242 Gene3D G3DSA:2.40.50.40 139 203 1.2E-24 T 14-09-2016 PAJ_RS11180 8b30e92128b213ab1f0e823881f5d798 242 SUPERFAMILY SSF52172 2 128 2.85E-26 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS11180 8b30e92128b213ab1f0e823881f5d798 242 SMART SM00850 143 241 8.1E-37 T 14-09-2016 IPR007492 LytTR DNA-binding domain GO:0003677 PAJ_RS11180 8b30e92128b213ab1f0e823881f5d798 242 Pfam PF04397 LytTr DNA-binding domain 144 239 1.8E-31 T 14-09-2016 IPR007492 LytTR DNA-binding domain GO:0003677 PAJ_RS11180 8b30e92128b213ab1f0e823881f5d798 242 PANTHER PTHR26402 1 181 1.6E-40 T 14-09-2016 PAJ_RS10455 7b77a1dfa9dea877a7ad185b9a258c62 213 Gene3D G3DSA:2.60.120.590 15 212 1.1E-55 T 14-09-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like PAJ_RS10455 7b77a1dfa9dea877a7ad185b9a258c62 213 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 34 210 8.3E-55 T 14-09-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like PAJ_RS10455 7b77a1dfa9dea877a7ad185b9a258c62 213 SUPERFAMILY SSF51197 15 212 2.06E-60 T 14-09-2016 PAJ_RS10455 7b77a1dfa9dea877a7ad185b9a258c62 213 PANTHER PTHR16557 50 213 5.3E-52 T 14-09-2016 IPR004574 Alkylated DNA repair protein AlkB GO:0006281|GO:0055114 PAJ_RS13380 92a3c9e62b56c9fcd528e8caf5be2c31 207 PANTHER PTHR30086 1 207 3.4E-94 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS13380 92a3c9e62b56c9fcd528e8caf5be2c31 207 PANTHER PTHR30086:SF0 1 207 3.4E-94 T 14-09-2016 PAJ_RS13380 92a3c9e62b56c9fcd528e8caf5be2c31 207 Hamap MF_01901 Arginine exporter protein ArgO [argO]. 1 206 37.055 T 14-09-2016 IPR023445 Arginine exporter protein ArgO, enterobacteria GO:0015181|GO:0015809 PAJ_RS13380 92a3c9e62b56c9fcd528e8caf5be2c31 207 Pfam PF01810 LysE type translocator 14 201 1.2E-51 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS13380 92a3c9e62b56c9fcd528e8caf5be2c31 207 TIGRFAM TIGR00948 2a75: L-lysine exporter 15 192 1.2E-64 T 14-09-2016 IPR004777 L-lysine exporter/arginine exporter GO:0016021 PAJ_RS11600 a7c84ff2da88da28aa5b3119dacaf085 276 PANTHER PTHR12905:SF7 6 23 1.0E-31 T 14-09-2016 PAJ_RS11600 a7c84ff2da88da28aa5b3119dacaf085 276 Pfam PF00149 Calcineurin-like phosphoesterase 8 201 4.3E-18 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PAJ_RS11600 a7c84ff2da88da28aa5b3119dacaf085 276 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 6 259 39.067 T 14-09-2016 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 PAJ_RS11600 a7c84ff2da88da28aa5b3119dacaf085 276 PANTHER PTHR12905:SF7 42 209 1.0E-31 T 14-09-2016 PAJ_RS11600 a7c84ff2da88da28aa5b3119dacaf085 276 Gene3D G3DSA:3.60.21.10 6 228 3.8E-42 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS11600 a7c84ff2da88da28aa5b3119dacaf085 276 SUPERFAMILY SSF56300 8 263 5.17E-59 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS11600 a7c84ff2da88da28aa5b3119dacaf085 276 PANTHER PTHR12905 42 209 1.0E-31 T 14-09-2016 PAJ_RS11600 a7c84ff2da88da28aa5b3119dacaf085 276 PANTHER PTHR12905 6 23 1.0E-31 T 14-09-2016 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 SUPERFAMILY SSF53850 5 218 1.15E-85 T 14-09-2016 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 296 1.4E-22 T 14-09-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 Gene3D G3DSA:3.40.190.10 3 110 1.7E-47 T 14-09-2016 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 SUPERFAMILY SSF54782 220 309 4.84E-28 T 14-09-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 PANTHER PTHR11557 1 308 7.2E-165 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 1.0E-49 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 1.0E-49 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 1.0E-49 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 1.0E-49 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 1.0E-49 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 PIRSF PIRSF001438 1 311 5.4E-121 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 39.524 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 Gene3D G3DSA:3.40.190.10 111 199 2.0E-40 T 14-09-2016 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 7 212 1.3E-77 T 14-09-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 Gene3D G3DSA:3.30.160.40 221 305 8.2E-27 T 14-09-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 7 296 4.5E-113 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18380 c212d3505bd1370d6f3778e8babf1d6a 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 14-09-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18515 f823663dc8437348d252394421fc7cde 252 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 17 251 38.979 T 14-09-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 PAJ_RS18515 f823663dc8437348d252394421fc7cde 252 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 159 173 - T 14-09-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 PAJ_RS18515 f823663dc8437348d252394421fc7cde 252 SUPERFAMILY SSF53335 19 249 6.19E-51 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS18515 f823663dc8437348d252394421fc7cde 252 Pfam PF01209 ubiE/COQ5 methyltransferase family 21 251 8.7E-104 T 14-09-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 PAJ_RS18515 f823663dc8437348d252394421fc7cde 252 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 26 251 1.2E-86 T 14-09-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 PAJ_RS18515 f823663dc8437348d252394421fc7cde 252 PANTHER PTHR10108:SF864 1 252 1.3E-182 T 14-09-2016 PAJ_RS18515 f823663dc8437348d252394421fc7cde 252 Gene3D G3DSA:3.40.50.150 24 248 1.9E-57 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS18515 f823663dc8437348d252394421fc7cde 252 PANTHER PTHR10108 1 252 1.3E-182 T 14-09-2016 PAJ_RS18515 f823663dc8437348d252394421fc7cde 252 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 37 52 - T 14-09-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 SUPERFAMILY SSF52833 4 107 4.4E-30 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 PANTHER PTHR10438:SF281 195 216 4.2E-25 T 14-09-2016 PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 PANTHER PTHR10438:SF281 1 110 4.2E-25 T 14-09-2016 PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 PANTHER PTHR10438 195 216 4.2E-25 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 PANTHER PTHR10438 1 110 4.2E-25 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 PRINTS PR00421 Thioredoxin family signature 32 41 1.8E-6 T 14-09-2016 PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 PRINTS PR00421 Thioredoxin family signature 72 83 1.8E-6 T 14-09-2016 PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 PRINTS PR00421 Thioredoxin family signature 24 32 1.8E-6 T 14-09-2016 PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 Pfam PF00085 Thioredoxin 7 106 3.4E-22 T 14-09-2016 IPR013766 Thioredoxin domain GO:0045454 PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 Gene3D G3DSA:3.40.30.10 3 107 2.8E-26 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10390 70cec8baed4394cc65799547226a4e58 418 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 14-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 14-09-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 Pfam PF00709 Adenylosuccinate synthetase 5 423 6.4E-176 T 14-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 SUPERFAMILY SSF52540 3 430 1.06E-178 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 Gene3D G3DSA:3.40.440.10 3 94 1.1E-70 T 14-09-2016 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 Gene3D G3DSA:3.40.440.10 196 266 1.1E-70 T 14-09-2016 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 PANTHER PTHR11846 1 429 2.7E-260 T 14-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 Gene3D G3DSA:3.90.170.10 267 426 1.1E-67 T 14-09-2016 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 430 5.1E-203 T 14-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 14-09-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 SMART SM00788 4 425 2.9E-299 T 14-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 Gene3D G3DSA:1.10.300.10 103 195 9.0E-36 T 14-09-2016 PAJ_RS15365 c9f35144e6c2e08b9f32b4f03c367117 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 216.229 T 14-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PAJ_RS10235 eec53acd2875bb736f8432f7bc5ea0a9 564 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 111 197 6.7E-18 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS10235 eec53acd2875bb736f8432f7bc5ea0a9 564 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 217 555 3.9E-142 T 14-09-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 PAJ_RS10235 eec53acd2875bb736f8432f7bc5ea0a9 564 Gene3D G3DSA:3.40.50.2300 4 88 6.7E-6 T 14-09-2016 PAJ_RS10235 eec53acd2875bb736f8432f7bc5ea0a9 564 Gene3D G3DSA:3.40.50.2300 106 209 9.5E-42 T 14-09-2016 PAJ_RS10235 eec53acd2875bb736f8432f7bc5ea0a9 564 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 110 193 8.0E-39 T 14-09-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 PAJ_RS10235 eec53acd2875bb736f8432f7bc5ea0a9 564 Pfam PF02378 Phosphotransferase system, EIIC 236 499 3.0E-14 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS10235 eec53acd2875bb736f8432f7bc5ea0a9 564 PANTHER PTHR30505 25 546 7.9E-266 T 14-09-2016 PAJ_RS10235 eec53acd2875bb736f8432f7bc5ea0a9 564 PANTHER PTHR30505:SF0 25 546 7.9E-266 T 14-09-2016 PAJ_RS10235 eec53acd2875bb736f8432f7bc5ea0a9 564 SUPERFAMILY SSF52794 5 87 5.41E-10 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS10235 eec53acd2875bb736f8432f7bc5ea0a9 564 SUPERFAMILY SSF52794 108 209 1.74E-34 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 SUPERFAMILY SSF53706 51 630 5.5E-149 T 14-09-2016 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 17 761 0.0 T 14-09-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 PIRSF PIRSF000144 1 767 0.0 T 14-09-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 Gene3D G3DSA:2.40.40.20 643 766 6.5E-9 T 14-09-2016 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 Pfam PF00384 Molybdopterin oxidoreductase 113 495 8.9E-28 T 14-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 Gene3D G3DSA:3.40.50.740 113 183 2.8E-46 T 14-09-2016 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 Gene3D G3DSA:3.40.50.740 393 601 2.8E-46 T 14-09-2016 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 SUPERFAMILY SSF50692 645 765 7.46E-15 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 PANTHER PTHR11615:SF114 30 256 1.9E-244 T 14-09-2016 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 PANTHER PTHR11615:SF114 275 767 1.9E-244 T 14-09-2016 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 PANTHER PTHR11615 30 256 1.9E-244 T 14-09-2016 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 PANTHER PTHR11615 275 767 1.9E-244 T 14-09-2016 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 Pfam PF01568 Molydopterin dinucleotide binding domain 647 757 1.8E-9 T 14-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PAJ_RS06905 dc29fedbbb5414cd521c7dd2d809177c 775 Gene3D G3DSA:3.40.228.10 185 392 1.5E-61 T 14-09-2016 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 SMART SM00304 186 238 7.6E-14 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 SUPERFAMILY SSF158472 187 235 1.06E-9 T 14-09-2016 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 301 8.8E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 SUPERFAMILY SSF55874 292 456 1.23E-39 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 SMART SM00388 239 303 4.1E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 Gene3D G3DSA:1.10.287.130 231 289 4.9E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 PANTHER PTHR24423:SF531 1 11 5.7E-130 T 14-09-2016 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 PANTHER PTHR24423:SF531 180 456 5.7E-130 T 14-09-2016 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 456 7.0E-21 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 SUPERFAMILY SSF47384 222 301 9.61E-14 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 PANTHER PTHR24423 1 11 5.7E-130 T 14-09-2016 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 PANTHER PTHR24423 180 456 5.7E-130 T 14-09-2016 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 1.7E-11 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 1.7E-11 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 413 1.7E-11 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 Pfam PF00672 HAMP domain 167 234 7.5E-17 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 Gene3D G3DSA:3.30.565.10 290 458 1.3E-37 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10035 26c942fe947ad48feb1f8585a4ef196c 462 SMART SM00387 348 460 3.0E-37 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS12505 9203b9f3a47b4bbc8f79b047744672e8 137 TIGRFAM TIGR00333 nrdI: nrdI protein 5 131 9.7E-54 T 14-09-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI PAJ_RS12505 9203b9f3a47b4bbc8f79b047744672e8 137 PANTHER PTHR37297:SF1 1 134 7.5E-48 T 14-09-2016 PAJ_RS12505 9203b9f3a47b4bbc8f79b047744672e8 137 Gene3D G3DSA:3.40.50.360 4 132 9.6E-56 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS12505 9203b9f3a47b4bbc8f79b047744672e8 137 PIRSF PIRSF005087 1 135 2.7E-52 T 14-09-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI PAJ_RS12505 9203b9f3a47b4bbc8f79b047744672e8 137 SUPERFAMILY SSF52218 4 131 4.19E-25 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS12505 9203b9f3a47b4bbc8f79b047744672e8 137 PANTHER PTHR37297 1 134 7.5E-48 T 14-09-2016 PAJ_RS12505 9203b9f3a47b4bbc8f79b047744672e8 137 Pfam PF07972 NrdI Flavodoxin like 5 122 1.2E-46 T 14-09-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI PAJ_RS12505 9203b9f3a47b4bbc8f79b047744672e8 137 Hamap MF_00128 Protein NrdI [nrdI]. 3 132 35.325 T 14-09-2016 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial PAJ_RS17895 f9775e597ae2d63ca976d2492665a74e 317 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 262 275 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS17895 f9775e597ae2d63ca976d2492665a74e 317 Gene3D G3DSA:3.40.1190.20 5 314 9.6E-93 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS17895 f9775e597ae2d63ca976d2492665a74e 317 PANTHER PTHR10584 6 316 1.1E-104 T 14-09-2016 PAJ_RS17895 f9775e597ae2d63ca976d2492665a74e 317 SUPERFAMILY SSF53613 9 314 4.05E-85 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS17895 f9775e597ae2d63ca976d2492665a74e 317 Pfam PF00294 pfkB family carbohydrate kinase 10 310 6.8E-63 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS17895 f9775e597ae2d63ca976d2492665a74e 317 PANTHER PTHR10584:SF186 6 316 1.1E-104 T 14-09-2016 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 Gene3D G3DSA:3.20.70.20 610 700 1.2E-42 T 14-09-2016 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 Gene3D G3DSA:3.20.70.20 398 559 1.2E-42 T 14-09-2016 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 Gene3D G3DSA:3.20.70.20 135 344 1.2E-42 T 14-09-2016 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 1.4E-180 T 14-09-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 Pfam PF03477 ATP cone domain 6 92 1.7E-15 T 14-09-2016 IPR005144 ATP-cone domain PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 141 219 1.2E-13 T 14-09-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 2.8E-40 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 2.8E-40 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 2.8E-40 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 2.8E-40 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 2.8E-40 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 2.8E-40 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 SUPERFAMILY SSF48168 10 221 4.05E-73 T 14-09-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 SUPERFAMILY SSF51998 222 740 5.8E-170 T 14-09-2016 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 PANTHER PTHR11573 6 752 0.0 T 14-09-2016 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 PANTHER PTHR11573:SF17 6 752 0.0 T 14-09-2016 PAJ_RS10530 5dcf7d1f5ab9a8a1b97e7963ab6c4f1a 761 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 662 6.1E-113 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 TIGRFAM TIGR01312 XylB: xylulokinase 3 473 3.3E-182 T 14-09-2016 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 Gene3D G3DSA:3.30.420.40 1 240 2.1E-71 T 14-09-2016 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 PIRSF PIRSF000538 1 480 4.8E-136 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 250 435 4.8E-31 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 PANTHER PTHR10196:SF72 3 480 0.0 T 14-09-2016 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 PANTHER PTHR10196 3 480 0.0 T 14-09-2016 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 Gene3D G3DSA:3.30.420.40 243 479 3.0E-51 T 14-09-2016 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 126 138 - T 14-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 240 1.1E-82 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 SUPERFAMILY SSF53067 2 242 7.48E-76 T 14-09-2016 PAJ_RS17710 e4f2f10dc72b830b66edd7dafbed09ad 480 SUPERFAMILY SSF53067 242 478 2.87E-60 T 14-09-2016 PAJ_RS16615 059fcef4ac25f5be7aa4f56c0178ba93 366 PANTHER PTHR24220 11 242 6.5E-116 T 14-09-2016 PAJ_RS16615 059fcef4ac25f5be7aa4f56c0178ba93 366 SUPERFAMILY SSF52540 10 249 2.48E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16615 059fcef4ac25f5be7aa4f56c0178ba93 366 PANTHER PTHR24220:SF151 11 242 6.5E-116 T 14-09-2016 PAJ_RS16615 059fcef4ac25f5be7aa4f56c0178ba93 366 Gene3D G3DSA:3.40.50.300 8 239 1.5E-74 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16615 059fcef4ac25f5be7aa4f56c0178ba93 366 SMART SM00382 34 217 2.8E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16615 059fcef4ac25f5be7aa4f56c0178ba93 366 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS16615 059fcef4ac25f5be7aa4f56c0178ba93 366 SUPERFAMILY SSF50331 244 361 3.97E-8 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS16615 059fcef4ac25f5be7aa4f56c0178ba93 366 Pfam PF00005 ABC transporter 25 167 6.2E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 PANTHER PTHR24423 931 942 6.2E-90 T 14-09-2016 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 Pfam PF05231 MASE1 22 297 1.6E-20 T 14-09-2016 IPR007895 MASE1 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 302 425 5.5E-32 T 14-09-2016 IPR000014 PAS domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 456 553 5.4E-9 T 14-09-2016 IPR000014 PAS domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 563 682 5.3E-13 T 14-09-2016 IPR000014 PAS domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 Gene3D G3DSA:3.30.70.270 691 853 3.1E-51 T 14-09-2016 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 PANTHER PTHR24423:SF477 34 563 6.2E-90 T 14-09-2016 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 PANTHER PTHR24423:SF477 931 942 6.2E-90 T 14-09-2016 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SUPERFAMILY SSF55785 441 547 1.77E-18 T 14-09-2016 IPR000014 PAS domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 Gene3D G3DSA:3.30.450.20 298 418 3.5E-27 T 14-09-2016 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 Pfam PF08447 PAS fold 455 539 2.4E-16 T 14-09-2016 IPR013655 PAS fold-3 GO:0005515 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 Pfam PF08447 PAS fold 329 411 1.0E-14 T 14-09-2016 IPR013655 PAS fold-3 GO:0005515 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SUPERFAMILY SSF55073 694 852 2.12E-44 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 Pfam PF00989 PAS fold 564 675 2.0E-11 T 14-09-2016 IPR013767 PAS fold GO:0006355 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 Pfam PF00990 Diguanylate cyclase, GGDEF domain 689 845 3.9E-42 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 PANTHER PTHR24423 34 563 6.2E-90 T 14-09-2016 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 Gene3D G3DSA:3.30.450.20 432 554 1.2E-22 T 14-09-2016 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SUPERFAMILY SSF55785 543 676 1.61E-19 T 14-09-2016 IPR000014 PAS domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 687 849 5.0E-40 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SMART SM00086 636 678 0.017 T 14-09-2016 IPR001610 PAC motif PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SMART SM00086 378 420 3.2E-12 T 14-09-2016 IPR001610 PAC motif PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SMART SM00086 505 546 0.0051 T 14-09-2016 IPR001610 PAC motif PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 Gene3D G3DSA:3.30.450.20 555 676 1.9E-20 T 14-09-2016 PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SMART SM00091 432 499 0.016 T 14-09-2016 IPR000014 PAS domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SMART SM00091 558 623 5.3E-8 T 14-09-2016 IPR000014 PAS domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SMART SM00091 305 371 1.1E-11 T 14-09-2016 IPR000014 PAS domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SMART SM00267 678 850 5.6E-56 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS09995 f873d7c0a5ba51ee22337b1705ab4da2 958 SUPERFAMILY SSF55785 312 422 5.41E-25 T 14-09-2016 IPR000014 PAS domain PAJ_RS10930 2e33ba2c79c5aef7a416f0a5b75035c5 98 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 5 98 1.9E-38 T 14-09-2016 IPR005272 Conserved hypothetical protein CHP00743 PAJ_RS10930 2e33ba2c79c5aef7a416f0a5b75035c5 98 PANTHER PTHR38769 1 98 2.5E-30 T 14-09-2016 PAJ_RS10930 2e33ba2c79c5aef7a416f0a5b75035c5 98 PANTHER PTHR38769:SF1 1 98 2.5E-30 T 14-09-2016 PAJ_RS10930 2e33ba2c79c5aef7a416f0a5b75035c5 98 Gene3D G3DSA:3.30.70.860 27 98 5.1E-32 T 14-09-2016 PAJ_RS10930 2e33ba2c79c5aef7a416f0a5b75035c5 98 Pfam PF04175 Protein of unknown function (DUF406) 7 98 3.3E-38 T 14-09-2016 IPR005272 Conserved hypothetical protein CHP00743 PAJ_RS02245 06ebb989e68398939e4ac8d2f942fcfc 180 PANTHER PTHR33420 14 180 2.7E-43 T 14-09-2016 PAJ_RS02245 06ebb989e68398939e4ac8d2f942fcfc 180 SUPERFAMILY SSF49401 30 180 1.04E-37 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS02245 06ebb989e68398939e4ac8d2f942fcfc 180 Gene3D G3DSA:2.60.40.1090 29 180 2.1E-46 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS02245 06ebb989e68398939e4ac8d2f942fcfc 180 PANTHER PTHR33420:SF7 14 180 2.7E-43 T 14-09-2016 PAJ_RS02245 06ebb989e68398939e4ac8d2f942fcfc 180 Pfam PF00419 Fimbrial protein 31 179 3.5E-16 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS00170 c905ff422fe880221c9adc37f30d9646 217 PANTHER PTHR11079:SF86 1 216 7.7E-79 T 14-09-2016 PAJ_RS00170 c905ff422fe880221c9adc37f30d9646 217 PANTHER PTHR11079 1 216 7.7E-79 T 14-09-2016 PAJ_RS00170 c905ff422fe880221c9adc37f30d9646 217 SUPERFAMILY SSF55120 6 214 1.33E-61 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS00170 c905ff422fe880221c9adc37f30d9646 217 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 58 72 - T 14-09-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS00170 c905ff422fe880221c9adc37f30d9646 217 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 10 215 9.7E-59 T 14-09-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS00170 c905ff422fe880221c9adc37f30d9646 217 Pfam PF00849 RNA pseudouridylate synthase 20 167 2.7E-29 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 Pfam PF11941 Domain of unknown function (DUF3459) 504 585 1.9E-11 T 14-09-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 SMART SM00642 117 512 5.0E-10 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 PANTHER PTHR10357:SF110 8 461 3.0E-107 T 14-09-2016 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 Pfam PF00128 Alpha amylase, catalytic domain 232 438 2.8E-4 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 Pfam PF00128 Alpha amylase, catalytic domain 127 210 3.2E-13 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 PANTHER PTHR10357 484 558 3.0E-107 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 PIRSF PIRSF006337 6 590 7.6E-220 T 14-09-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 SUPERFAMILY SSF51445 92 515 2.15E-108 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 Gene3D G3DSA:3.20.20.80 484 515 1.2E-77 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 Gene3D G3DSA:3.20.20.80 109 441 1.2E-77 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 Gene3D G3DSA:2.60.40.10 12 95 9.1E-26 T 14-09-2016 IPR013783 Immunoglobulin-like fold PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 PANTHER PTHR10357 8 461 3.0E-107 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 PANTHER PTHR10357:SF110 484 558 3.0E-107 T 14-09-2016 PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 SUPERFAMILY SSF81296 6 95 3.8E-18 T 14-09-2016 IPR014756 Immunoglobulin E-set PAJ_RS06050 1cea92db50a53bccf9407d9f452f9b3a 595 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 20 562 2.6E-220 T 14-09-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 Pfam PF00347 Ribosomal protein L6 90 164 8.9E-19 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 Pfam PF00347 Ribosomal protein L6 11 82 2.8E-18 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 SUPERFAMILY SSF56053 83 177 8.06E-36 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.4E-72 T 14-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 Gene3D G3DSA:3.90.930.12 2 82 3.9E-28 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 PANTHER PTHR11655:SF14 1 176 1.6E-86 T 14-09-2016 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 PIRSF PIRSF002162 1 177 3.7E-43 T 14-09-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.229 T 14-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 7.8E-34 T 14-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 7.8E-34 T 14-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 7.8E-34 T 14-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 Gene3D G3DSA:3.90.930.12 83 177 2.7E-40 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 PANTHER PTHR11655 1 176 1.6E-86 T 14-09-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 SUPERFAMILY SSF56053 1 82 1.26E-22 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PAJ_RS15780 13551419c896cd27e92bd07b7432e197 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 14-09-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 SUPERFAMILY SSF53850 90 294 5.43E-38 T 14-09-2016 PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 PANTHER PTHR30419 1 304 2.6E-107 T 14-09-2016 PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 9.6E-23 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 PANTHER PTHR30419:SF3 1 304 2.6E-107 T 14-09-2016 PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 Gene3D G3DSA:3.40.190.10 90 180 2.1E-20 T 14-09-2016 PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.4E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.4E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.4E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 SUPERFAMILY SSF46785 3 113 4.73E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 Pfam PF03466 LysR substrate binding domain 89 293 9.7E-42 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 Gene3D G3DSA:1.10.10.10 4 88 1.6E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11290 efa2baedc900161c9f19a1cc4e1c9b35 306 Gene3D G3DSA:3.40.190.10 181 262 5.0E-17 T 14-09-2016 PAJ_RS11580 5c79c6b9512c0cf60261d14a0ccd60c7 651 PANTHER PTHR31151 265 651 9.7E-292 T 14-09-2016 PAJ_RS11580 5c79c6b9512c0cf60261d14a0ccd60c7 651 PANTHER PTHR31151:SF1 3 239 9.7E-292 T 14-09-2016 PAJ_RS11580 5c79c6b9512c0cf60261d14a0ccd60c7 651 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 12 560 1.1E-170 T 14-09-2016 IPR012878 Beta-L-arabinofuranosidase, GH127 KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18 PAJ_RS11580 5c79c6b9512c0cf60261d14a0ccd60c7 651 PANTHER PTHR31151 3 239 9.7E-292 T 14-09-2016 PAJ_RS11580 5c79c6b9512c0cf60261d14a0ccd60c7 651 Gene3D G3DSA:1.50.10.10 70 303 5.3E-22 T 14-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 PAJ_RS11580 5c79c6b9512c0cf60261d14a0ccd60c7 651 PANTHER PTHR31151:SF1 265 651 9.7E-292 T 14-09-2016 PAJ_RS11580 5c79c6b9512c0cf60261d14a0ccd60c7 651 SUPERFAMILY SSF48208 16 426 2.23E-40 T 14-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 PAJ_RS01610 e50d7916e238cb13ca367c78ef58c3c2 324 Gene3D G3DSA:3.20.20.100 9 323 1.1E-103 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS01610 e50d7916e238cb13ca367c78ef58c3c2 324 PANTHER PTHR11732:SF150 1 217 9.6E-127 T 14-09-2016 PAJ_RS01610 e50d7916e238cb13ca367c78ef58c3c2 324 SUPERFAMILY SSF51430 1 320 4.85E-99 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS01610 e50d7916e238cb13ca367c78ef58c3c2 324 PANTHER PTHR11732 237 322 9.6E-127 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PAJ_RS01610 e50d7916e238cb13ca367c78ef58c3c2 324 PANTHER PTHR11732 1 217 9.6E-127 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PAJ_RS01610 e50d7916e238cb13ca367c78ef58c3c2 324 PRINTS PR00069 Aldo-keto reductase signature 111 129 5.9E-5 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS01610 e50d7916e238cb13ca367c78ef58c3c2 324 PRINTS PR00069 Aldo-keto reductase signature 47 71 5.9E-5 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS01610 e50d7916e238cb13ca367c78ef58c3c2 324 PRINTS PR00069 Aldo-keto reductase signature 142 159 5.9E-5 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS01610 e50d7916e238cb13ca367c78ef58c3c2 324 PANTHER PTHR11732:SF150 237 322 9.6E-127 T 14-09-2016 PAJ_RS01610 e50d7916e238cb13ca367c78ef58c3c2 324 Pfam PF00248 Aldo/keto reductase family 15 315 2.0E-73 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS08225 910eb7fc7a277c17536e3f3cf6497deb 109 Pfam PF00893 Small Multidrug Resistance protein 8 99 6.9E-28 T 14-09-2016 IPR000390 Small multidrug resistance protein family GO:0016021 PAJ_RS08225 910eb7fc7a277c17536e3f3cf6497deb 109 SUPERFAMILY SSF103481 12 108 1.83E-17 T 14-09-2016 PAJ_RS08225 910eb7fc7a277c17536e3f3cf6497deb 109 PANTHER PTHR30561 5 109 6.4E-58 T 14-09-2016 PAJ_RS08225 910eb7fc7a277c17536e3f3cf6497deb 109 PANTHER PTHR30561:SF6 5 109 6.4E-58 T 14-09-2016 IPR023737 Spermidine export protein MdtI GO:0005886|GO:0015606|GO:0015848 PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 Gene3D G3DSA:1.10.357.10 61 210 7.2E-24 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.1E-18 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 PANTHER PTHR30328:SF26 1 208 3.3E-93 T 14-09-2016 PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 5.1E-12 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 5.1E-12 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 Gene3D G3DSA:1.10.10.60 3 60 3.1E-22 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 59 - T 14-09-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 PANTHER PTHR30328 1 208 3.3E-93 T 14-09-2016 PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 SUPERFAMILY SSF48498 84 203 1.11E-17 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 204 2.6E-45 T 14-09-2016 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 PAJ_RS01855 d405dadc86a8b127800ea37b461ccb7a 212 SUPERFAMILY SSF46689 1 67 2.57E-18 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS18505 d45e34ad8095536232db2ee8223ff50c 253 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 6 253 3.8E-121 T 14-09-2016 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|UniPathway: UPA00574 PAJ_RS18505 d45e34ad8095536232db2ee8223ff50c 253 PANTHER PTHR21234 1 253 1.4E-181 T 14-09-2016 IPR018017 Nucleoside phosphorylase PAJ_RS18505 d45e34ad8095536232db2ee8223ff50c 253 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 66 81 - T 14-09-2016 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 PAJ_RS18505 d45e34ad8095536232db2ee8223ff50c 253 SUPERFAMILY SSF53167 7 250 6.94E-73 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS18505 d45e34ad8095536232db2ee8223ff50c 253 PANTHER PTHR21234:SF22 1 253 1.4E-181 T 14-09-2016 PAJ_RS18505 d45e34ad8095536232db2ee8223ff50c 253 Gene3D G3DSA:3.40.50.1580 5 252 2.7E-82 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS18505 d45e34ad8095536232db2ee8223ff50c 253 Pfam PF01048 Phosphorylase superfamily 21 228 2.1E-40 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS02590 d5dc085c4619598882a28760cfeb3091 266 SUPERFAMILY SSF100950 1 264 9.63E-105 T 14-09-2016 PAJ_RS02590 d5dc085c4619598882a28760cfeb3091 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 9 230 9.4E-21 T 14-09-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 PAJ_RS02590 d5dc085c4619598882a28760cfeb3091 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 14-09-2016 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|UniPathway: UPA00629 PAJ_RS02590 d5dc085c4619598882a28760cfeb3091 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.82 T 14-09-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|UniPathway: UPA00629 PAJ_RS02590 d5dc085c4619598882a28760cfeb3091 266 Gene3D G3DSA:3.40.50.1360 1 264 2.7E-113 T 14-09-2016 PAJ_RS02590 d5dc085c4619598882a28760cfeb3091 266 PANTHER PTHR11280 1 263 8.4E-179 T 14-09-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|UniPathway: UPA00629 PAJ_RS02590 d5dc085c4619598882a28760cfeb3091 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 1.4E-139 T 14-09-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|UniPathway: UPA00629 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 Pfam PF00365 Phosphofructokinase 4 275 3.8E-108 T 14-09-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PANTHER PTHR13697 2 314 2.0E-138 T 14-09-2016 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 ProSitePatterns PS00433 Phosphofructokinase signature. 244 262 - T 14-09-2016 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 9.0E-84 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 139 157 9.0E-84 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 159 175 9.0E-84 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 9.0E-84 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 121 138 9.0E-84 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 240 262 9.0E-84 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 9.0E-84 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 213 225 9.0E-84 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 177 194 9.0E-84 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 SUPERFAMILY SSF53784 3 312 1.7E-114 T 14-09-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 320 46.659 T 14-09-2016 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 PIRSF PIRSF000532 1 320 1.9E-131 T 14-09-2016 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 Gene3D G3DSA:3.40.50.450 2 215 3.1E-77 T 14-09-2016 PAJ_RS17130 0559a35b511d2837ec1444b89cde12b9 320 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 301 1.8E-126 T 14-09-2016 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 Gene3D G3DSA:3.40.47.10 302 435 7.9E-48 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 Gene3D G3DSA:3.40.47.10 175 220 7.9E-48 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 14-09-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 66.818 T 14-09-2016 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0005737|GO:0006631|GO:0016042|GO:0016740|GO:0016746 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 PANTHER PTHR18919:SF5 10 436 8.8E-184 T 14-09-2016 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 PANTHER PTHR18919 10 436 8.8E-184 T 14-09-2016 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 SUPERFAMILY SSF53901 15 295 2.05E-57 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 ProSitePatterns PS00099 Thiolases active site. 417 430 - T 14-09-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 Gene3D G3DSA:3.40.47.10 221 300 1.3E-45 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 Gene3D G3DSA:3.40.47.10 15 134 1.3E-45 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 8 436 3.4E-241 T 14-09-2016 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0005737|GO:0006631|GO:0016042|GO:0016740|GO:0016746 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 14-09-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 SUPERFAMILY SSF53901 297 434 1.31E-32 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 4.4E-125 T 14-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 Pfam PF02803 Thiolase, C-terminal domain 296 434 3.1E-35 T 14-09-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 Pfam PF00108 Thiolase, N-terminal domain 15 287 1.7E-56 T 14-09-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PAJ_RS10925 0d6a15ed76f8af6bfa5a73bcaa6db5f9 436 PIRSF PIRSF000429 9 436 1.5E-117 T 14-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 Pfam PF01726 LexA DNA binding domain 1 65 2.1E-29 T 14-09-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 Gene3D G3DSA:1.10.10.10 1 69 8.2E-30 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 TIGRFAM TIGR00498 lexA: repressor LexA 1 201 7.1E-83 T 14-09-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 124 135 1.2E-13 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 113 123 1.2E-13 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 152 164 1.2E-13 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 SUPERFAMILY SSF46785 3 69 1.76E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 Pfam PF00717 Peptidase S24-like 116 182 1.9E-14 T 14-09-2016 IPR019759 Peptidase S24/S26A/S26B PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 Gene3D G3DSA:2.10.109.10 78 200 3.3E-44 T 14-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 Hamap MF_00015 LexA repressor [lexA]. 3 201 32.137 T 14-09-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 PANTHER PTHR33516 1 204 1.5E-103 T 14-09-2016 PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 PANTHER PTHR33516:SF2 1 204 1.5E-103 T 14-09-2016 PAJ_RS18915 340f8d258f3e7319e4af40e30a7aa666 204 SUPERFAMILY SSF51306 78 199 4.71E-37 T 14-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PAJ_RS08260 4f6838c63d7223f646b85486bc9292c5 157 SUPERFAMILY SSF55785 35 125 2.09E-7 T 14-09-2016 IPR000014 PAS domain PAJ_RS08260 4f6838c63d7223f646b85486bc9292c5 157 Pfam PF08670 MEKHLA domain 11 146 1.8E-31 T 14-09-2016 IPR013978 MEKHLA PAJ_RS08260 4f6838c63d7223f646b85486bc9292c5 157 Gene3D G3DSA:3.30.450.20 36 123 4.2E-6 T 14-09-2016 PAJ_RS00400 3cacfc9e5f10c7a74ca2a4a28ebf110d 461 SUPERFAMILY SSF52540 81 455 1.97E-87 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00400 3cacfc9e5f10c7a74ca2a4a28ebf110d 461 PANTHER PTHR30258 80 461 3.1E-175 T 14-09-2016 PAJ_RS00400 3cacfc9e5f10c7a74ca2a4a28ebf110d 461 Pfam PF00437 Type II/IV secretion system protein 95 354 1.0E-76 T 14-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PAJ_RS00400 3cacfc9e5f10c7a74ca2a4a28ebf110d 461 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 282 296 - T 14-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PAJ_RS00400 3cacfc9e5f10c7a74ca2a4a28ebf110d 461 Gene3D G3DSA:3.40.50.300 193 457 1.1E-94 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00400 3cacfc9e5f10c7a74ca2a4a28ebf110d 461 PANTHER PTHR30258:SF1 80 461 3.1E-175 T 14-09-2016 PAJ_RS00400 3cacfc9e5f10c7a74ca2a4a28ebf110d 461 Gene3D G3DSA:3.30.450.90 73 187 5.6E-39 T 14-09-2016 PAJ_RS12795 5b37ac32032741cbb404811f0a98d707 360 PANTHER PTHR30163 1 357 1.7E-192 T 14-09-2016 IPR011757 Lytic transglycosylase MltB PAJ_RS12795 5b37ac32032741cbb404811f0a98d707 360 Gene3D G3DSA:1.10.530.10 109 162 4.1E-57 T 14-09-2016 PAJ_RS12795 5b37ac32032741cbb404811f0a98d707 360 Gene3D G3DSA:1.10.530.10 243 354 4.1E-57 T 14-09-2016 PAJ_RS12795 5b37ac32032741cbb404811f0a98d707 360 Pfam PF13406 Transglycosylase SLT domain 56 348 3.2E-90 T 14-09-2016 IPR031304 Transglycosylase SLT domain 2 PAJ_RS12795 5b37ac32032741cbb404811f0a98d707 360 SUPERFAMILY SSF53955 49 351 3.94E-95 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS12795 5b37ac32032741cbb404811f0a98d707 360 PANTHER PTHR30163:SF0 1 357 1.7E-192 T 14-09-2016 PAJ_RS12795 5b37ac32032741cbb404811f0a98d707 360 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 60 351 1.3E-120 T 14-09-2016 IPR011757 Lytic transglycosylase MltB PAJ_RS02410 ff7c6ab039407329650acfecb3fde5d1 67 PANTHER PTHR33162:SF2 1 56 1.1E-23 T 14-09-2016 PAJ_RS02410 ff7c6ab039407329650acfecb3fde5d1 67 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 5.6E-20 T 14-09-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 PAJ_RS02410 ff7c6ab039407329650acfecb3fde5d1 67 Hamap MF_00903 Probable Sec-independent protein translocase protein TatE [tatE]. 1 67 26.775 T 14-09-2016 IPR024905 Sec-independent protein translocase protein TatE PAJ_RS02410 ff7c6ab039407329650acfecb3fde5d1 67 Pfam PF02416 mttA/Hcf106 family 4 49 4.7E-13 T 14-09-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 PAJ_RS02410 ff7c6ab039407329650acfecb3fde5d1 67 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 67 20.425 T 14-09-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 PAJ_RS02410 ff7c6ab039407329650acfecb3fde5d1 67 PANTHER PTHR33162 1 56 1.1E-23 T 14-09-2016 PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 PRINTS PR01755 Bacterial translocase SecF protein signature 44 59 2.9E-32 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 PRINTS PR01755 Bacterial translocase SecF protein signature 207 225 2.9E-32 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 PRINTS PR01755 Bacterial translocase SecF protein signature 159 173 2.9E-32 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 PRINTS PR01755 Bacterial translocase SecF protein signature 239 254 2.9E-32 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 Gene3D G3DSA:1.20.1640.10 135 303 7.3E-25 T 14-09-2016 PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 17 302 27.497 T 14-09-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 45 291 3.3E-83 T 14-09-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 123 288 3.5E-53 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 PANTHER PTHR30081 7 317 2.9E-84 T 14-09-2016 PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 SUPERFAMILY SSF82866 79 302 9.94E-39 T 14-09-2016 PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 Pfam PF07549 SecD/SecF GG Motif 40 66 9.8E-11 T 14-09-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site PAJ_RS01570 2a4a1fbfeb922f98471719961dfea74f 322 Pfam PF02355 Protein export membrane protein 116 300 4.4E-66 T 14-09-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial PAJ_RS13210 0a639fc29d1653440d5f1c8dfb963985 236 PANTHER PTHR30060:SF1 1 234 1.2E-114 T 14-09-2016 PAJ_RS13210 0a639fc29d1653440d5f1c8dfb963985 236 PANTHER PTHR30060 1 234 1.2E-114 T 14-09-2016 PAJ_RS13210 0a639fc29d1653440d5f1c8dfb963985 236 Pfam PF03741 Integral membrane protein TerC family 16 202 1.2E-52 T 14-09-2016 IPR005496 Integral membrane protein TerC GO:0016021 PAJ_RS01010 2e03f69e669de4d49e1ee30e0bd841c6 279 SUPERFAMILY SSF46689 2 79 1.51E-18 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS01010 2e03f69e669de4d49e1ee30e0bd841c6 279 PANTHER PTHR30514 1 270 1.5E-90 T 14-09-2016 PAJ_RS01010 2e03f69e669de4d49e1ee30e0bd841c6 279 Gene3D G3DSA:1.10.10.10 2 65 1.5E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01010 2e03f69e669de4d49e1ee30e0bd841c6 279 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 72 1.3E-12 T 14-09-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PAJ_RS01010 2e03f69e669de4d49e1ee30e0bd841c6 279 Gene3D G3DSA:3.40.50.10490 66 254 1.3E-15 T 14-09-2016 PAJ_RS01010 2e03f69e669de4d49e1ee30e0bd841c6 279 PANTHER PTHR30514:SF4 1 270 1.5E-90 T 14-09-2016 PAJ_RS01010 2e03f69e669de4d49e1ee30e0bd841c6 279 Pfam PF01380 SIS domain 124 249 4.8E-14 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS01010 2e03f69e669de4d49e1ee30e0bd841c6 279 SUPERFAMILY SSF53697 95 253 2.22E-16 T 14-09-2016 PAJ_RS00245 68c15c756056a8e55ed3add0de548664 201 SUPERFAMILY SSF52016 3 195 9.22E-62 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PAJ_RS00245 68c15c756056a8e55ed3add0de548664 201 Gene3D G3DSA:3.20.19.10 3 196 1.5E-47 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PAJ_RS00245 68c15c756056a8e55ed3add0de548664 201 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 3 189 9.3E-98 T 14-09-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00245 68c15c756056a8e55ed3add0de548664 201 Pfam PF00694 Aconitase C-terminal domain 3 126 2.5E-39 T 14-09-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00245 68c15c756056a8e55ed3add0de548664 201 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 2 200 44.897 T 14-09-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00245 68c15c756056a8e55ed3add0de548664 201 PANTHER PTHR11670:SF27 1 201 1.6E-118 T 14-09-2016 PAJ_RS00245 68c15c756056a8e55ed3add0de548664 201 PANTHER PTHR11670 1 201 1.6E-118 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS16700 bdf67125c0f613e926a7005edc0b7b27 388 Pfam PF11871 Domain of unknown function (DUF3391) 2 111 2.1E-19 T 14-09-2016 IPR021812 Protein of unknown function DUF3391 PAJ_RS16700 bdf67125c0f613e926a7005edc0b7b27 388 Gene3D G3DSA:1.10.3210.10 138 286 6.9E-21 T 14-09-2016 IPR006674 HD domain PAJ_RS16700 bdf67125c0f613e926a7005edc0b7b27 388 SUPERFAMILY SSF109604 139 301 1.09E-31 T 14-09-2016 PAJ_RS16700 bdf67125c0f613e926a7005edc0b7b27 388 TIGRFAM TIGR00277 HDIG: HDIG domain 144 236 1.5E-8 T 14-09-2016 IPR006675 HDIG domain PAJ_RS16700 bdf67125c0f613e926a7005edc0b7b27 388 SMART SM00471 141 276 9.5E-8 T 14-09-2016 IPR003607 HD/PDEase domain PAJ_RS16700 bdf67125c0f613e926a7005edc0b7b27 388 Pfam PF13487 HD domain 197 257 4.6E-17 T 14-09-2016 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 Gene3D G3DSA:3.20.20.60 172 331 4.2E-92 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 Gene3D G3DSA:3.20.20.60 6 76 4.2E-92 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 Gene3D G3DSA:2.40.33.10 77 170 7.4E-28 T 14-09-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 PANTHER PTHR11817:SF17 1 479 0.0 T 14-09-2016 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 PRINTS PR01050 Pyruvate kinase family signature 300 318 2.0E-51 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 2.0E-51 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 PRINTS PR01050 Pyruvate kinase family signature 223 249 2.0E-51 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 PRINTS PR01050 Pyruvate kinase family signature 275 299 2.0E-51 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 PRINTS PR01050 Pyruvate kinase family signature 250 274 2.0E-51 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 PRINTS PR01050 Pyruvate kinase family signature 190 204 2.0E-51 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 PRINTS PR01050 Pyruvate kinase family signature 319 335 2.0E-51 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 Gene3D G3DSA:3.40.1380.20 332 480 6.5E-37 T 14-09-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 PANTHER PTHR11817 1 479 0.0 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 SUPERFAMILY SSF51621 171 344 1.47E-85 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 SUPERFAMILY SSF51621 4 79 1.47E-85 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 3.4E-170 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 477 6.1E-28 T 14-09-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 14-09-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 SUPERFAMILY SSF50800 74 169 1.71E-24 T 14-09-2016 IPR011037 Pyruvate kinase-like, insert domain PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 SUPERFAMILY SSF52935 329 479 1.44E-37 T 14-09-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS08340 65fad5c3ea4bde9120fb5c62c525f255 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 2.6E-128 T 14-09-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS04200 49550f2389059c94d25f7fac377866af 239 Gene3D G3DSA:3.90.1720.10 122 235 2.1E-16 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS04200 49550f2389059c94d25f7fac377866af 239 Gene3D G3DSA:3.40.140.10 1 104 3.9E-18 T 14-09-2016 PAJ_RS04200 49550f2389059c94d25f7fac377866af 239 PANTHER PTHR34858 1 238 9.1E-55 T 14-09-2016 PAJ_RS04200 49550f2389059c94d25f7fac377866af 239 SMART SM00232 1 125 7.2E-6 T 14-09-2016 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 PAJ_RS04200 49550f2389059c94d25f7fac377866af 239 SUPERFAMILY SSF54001 114 235 2.5E-17 T 14-09-2016 PAJ_RS04200 49550f2389059c94d25f7fac377866af 239 Pfam PF00877 NlpC/P60 family 124 232 9.7E-19 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS04200 49550f2389059c94d25f7fac377866af 239 Pfam PF14464 Prokaryotic homologs of the JAB domain 3 97 8.1E-15 T 14-09-2016 IPR028090 JAB domain, prokaryotic PAJ_RS04200 49550f2389059c94d25f7fac377866af 239 PANTHER PTHR34858:SF1 1 238 9.1E-55 T 14-09-2016 PAJ_RS04200 49550f2389059c94d25f7fac377866af 239 SUPERFAMILY SSF102712 2 109 1.1E-15 T 14-09-2016 PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 Gene3D G3DSA:3.20.20.80 8 471 8.2E-150 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 PANTHER PTHR10353 8 470 1.2E-177 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 6.6E-16 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 366 374 6.6E-16 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 387 398 6.6E-16 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 408 425 6.6E-16 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 432 444 6.6E-16 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 PANTHER PTHR10353:SF60 8 470 1.2E-177 T 14-09-2016 PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 Pfam PF00232 Glycosyl hydrolase family 1 8 467 1.5E-146 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 366 374 - T 14-09-2016 IPR018120 Glycoside hydrolase family 1, active site PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 13 27 - T 14-09-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site PAJ_RS01395 e0939e71328f08a3ae1f99a5b4273da4 476 SUPERFAMILY SSF51445 7 467 4.29E-158 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS13035 47f451c4e250316c133da720c8bc7f52 519 Hamap MF_02031 Galactarate dehydratase (L-threo-forming) [garD]. 2 519 77.13 T 14-09-2016 IPR032893 Galactarate dehydratase (L-threo-forming) GarD, Enterobacteriaceae GO:0008867|GO:0046392 KEGG: 00053+4.2.1.42|MetaCyc: PWY-6497|UniPathway: UPA00565 PAJ_RS13035 47f451c4e250316c133da720c8bc7f52 519 PANTHER PTHR30536:SF1 1 519 0.0 T 14-09-2016 PAJ_RS13035 47f451c4e250316c133da720c8bc7f52 519 PANTHER PTHR30536 1 519 0.0 T 14-09-2016 PAJ_RS13035 47f451c4e250316c133da720c8bc7f52 519 Pfam PF08666 SAF domain 18 87 1.5E-10 T 14-09-2016 IPR013974 SAF domain PAJ_RS13035 47f451c4e250316c133da720c8bc7f52 519 TIGRFAM TIGR03248 galactar-dH20: galactarate dehydratase 10 519 1.5E-280 T 14-09-2016 IPR017654 Galactarate dehydratase GarD-like GO:0008867|GO:0046392 KEGG: 00053+4.2.1.42|MetaCyc: PWY-6497|UniPathway: UPA00565 PAJ_RS13035 47f451c4e250316c133da720c8bc7f52 519 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 115 516 8.3E-144 T 14-09-2016 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 PAJ_RS13035 47f451c4e250316c133da720c8bc7f52 519 SMART SM00858 18 88 7.9E-11 T 14-09-2016 IPR013974 SAF domain PAJ_RS04325 7e0cb7cd3adc78a66735f81eac66e9b0 850 SUPERFAMILY SSF53448 251 539 1.13E-25 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS04325 7e0cb7cd3adc78a66735f81eac66e9b0 850 PANTHER PTHR10587:SF63 156 425 5.6E-155 T 14-09-2016 PAJ_RS04325 7e0cb7cd3adc78a66735f81eac66e9b0 850 PANTHER PTHR10587 156 425 5.6E-155 T 14-09-2016 PAJ_RS04325 7e0cb7cd3adc78a66735f81eac66e9b0 850 PANTHER PTHR10587:SF63 474 749 5.6E-155 T 14-09-2016 PAJ_RS04325 7e0cb7cd3adc78a66735f81eac66e9b0 850 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 73 752 51.196 T 14-09-2016 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 UniPathway: UPA00637 PAJ_RS04325 7e0cb7cd3adc78a66735f81eac66e9b0 850 PANTHER PTHR10587 474 749 5.6E-155 T 14-09-2016 PAJ_RS04325 7e0cb7cd3adc78a66735f81eac66e9b0 850 Pfam PF00535 Glycosyl transferase family 2 253 435 7.4E-21 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS10700 38dd6d1c0c6c10bfc6bbe5cba45e9806 274 Gene3D G3DSA:1.10.3720.10 15 267 3.5E-58 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10700 38dd6d1c0c6c10bfc6bbe5cba45e9806 274 PANTHER PTHR30193 1 273 7.6E-99 T 14-09-2016 PAJ_RS10700 38dd6d1c0c6c10bfc6bbe5cba45e9806 274 SUPERFAMILY SSF161098 11 267 2.24E-58 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10700 38dd6d1c0c6c10bfc6bbe5cba45e9806 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 263 2.3E-19 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10700 38dd6d1c0c6c10bfc6bbe5cba45e9806 274 PANTHER PTHR30193:SF20 1 273 7.6E-99 T 14-09-2016 PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 Gene3D G3DSA:3.40.50.150 94 284 1.4E-66 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 Pfam PF03705 CheR methyltransferase, all-alpha domain 29 80 9.3E-18 T 14-09-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 PANTHER PTHR24422:SF13 18 290 7.8E-150 T 14-09-2016 PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 Pfam PF01739 CheR methyltransferase, SAM binding domain 95 280 4.8E-57 T 14-09-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 PANTHER PTHR24422 18 290 7.8E-150 T 14-09-2016 PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 SMART SM00138 27 287 9.9E-114 T 14-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 PIRSF PIRSF000410 10 288 5.1E-99 T 14-09-2016 IPR026024 Chemotaxis protein methyltransferase CheR PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 PRINTS PR00996 Glutamate methyltransferase family signature 49 62 1.1E-45 T 14-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 PRINTS PR00996 Glutamate methyltransferase family signature 155 171 1.1E-45 T 14-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 PRINTS PR00996 Glutamate methyltransferase family signature 227 241 1.1E-45 T 14-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 PRINTS PR00996 Glutamate methyltransferase family signature 121 141 1.1E-45 T 14-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 PRINTS PR00996 Glutamate methyltransferase family signature 88 100 1.1E-45 T 14-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 PRINTS PR00996 Glutamate methyltransferase family signature 246 269 1.1E-45 T 14-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 SUPERFAMILY SSF53335 95 284 1.07E-58 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 SUPERFAMILY SSF47757 18 94 1.57E-24 T 14-09-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal PAJ_RS08500 8c2fd05c39f80db804ffbcd4641cf81a 290 Gene3D G3DSA:1.10.155.10 17 93 2.0E-33 T 14-09-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal PAJ_RS07525 fe3df3f4ef9d68d7349c0647f44f93ad 267 SMART SM00382 38 227 1.5E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS07525 fe3df3f4ef9d68d7349c0647f44f93ad 267 PANTHER PTHR24220:SF81 6 254 6.2E-119 T 14-09-2016 PAJ_RS07525 fe3df3f4ef9d68d7349c0647f44f93ad 267 Pfam PF00005 ABC transporter 30 177 3.3E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS07525 fe3df3f4ef9d68d7349c0647f44f93ad 267 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS07525 fe3df3f4ef9d68d7349c0647f44f93ad 267 Gene3D G3DSA:3.40.50.300 2 251 1.3E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07525 fe3df3f4ef9d68d7349c0647f44f93ad 267 PANTHER PTHR24220 6 254 6.2E-119 T 14-09-2016 PAJ_RS07525 fe3df3f4ef9d68d7349c0647f44f93ad 267 SUPERFAMILY SSF52540 4 250 8.79E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12095 d532b2f2cf755c373c04062f3a17de59 226 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 221 40.182 T 14-09-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 PAJ_RS12095 d532b2f2cf755c373c04062f3a17de59 226 SMART SM00986 49 210 5.5E-41 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS12095 d532b2f2cf755c373c04062f3a17de59 226 Pfam PF03167 Uracil DNA glycosylase superfamily 55 211 3.1E-25 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS12095 d532b2f2cf755c373c04062f3a17de59 226 PANTHER PTHR11264 1 225 4.3E-164 T 14-09-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 PAJ_RS12095 d532b2f2cf755c373c04062f3a17de59 226 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 214 3.7E-87 T 14-09-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 PAJ_RS12095 d532b2f2cf755c373c04062f3a17de59 226 PANTHER PTHR11264:SF10 1 225 4.3E-164 T 14-09-2016 PAJ_RS12095 d532b2f2cf755c373c04062f3a17de59 226 SUPERFAMILY SSF52141 6 221 5.89E-94 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS12095 d532b2f2cf755c373c04062f3a17de59 226 Gene3D G3DSA:3.40.470.10 6 221 9.3E-100 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS12095 d532b2f2cf755c373c04062f3a17de59 226 SMART SM00987 49 210 5.5E-41 T 14-09-2016 PAJ_RS16205 d3d55609a55d9fae728fd9c752695dbc 272 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 2 81 8.0E-27 T 14-09-2016 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 PAJ_RS16205 d3d55609a55d9fae728fd9c752695dbc 272 Pfam PF01694 Rhomboid family 128 269 1.4E-27 T 14-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 PAJ_RS16205 d3d55609a55d9fae728fd9c752695dbc 272 Gene3D G3DSA:1.20.1540.10 94 265 3.4E-35 T 14-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 PAJ_RS16205 d3d55609a55d9fae728fd9c752695dbc 272 SUPERFAMILY SSF144091 91 268 4.32E-42 T 14-09-2016 PAJ_RS16205 d3d55609a55d9fae728fd9c752695dbc 272 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 2 268 1.8E-115 T 14-09-2016 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 PAJ_RS16205 d3d55609a55d9fae728fd9c752695dbc 272 PANTHER PTHR22936 1 272 1.7E-87 T 14-09-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 PAJ_RS16205 d3d55609a55d9fae728fd9c752695dbc 272 PANTHER PTHR22936:SF30 1 272 1.7E-87 T 14-09-2016 PAJ_RS00030 3d92f7e2bbea5b87d07d0b219d477ea7 195 SUPERFAMILY SSF53218 3 188 2.26E-46 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS00030 3d92f7e2bbea5b87d07d0b219d477ea7 195 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 14-09-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 PAJ_RS00030 3d92f7e2bbea5b87d07d0b219d477ea7 195 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 147 9.0E-41 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS00030 3d92f7e2bbea5b87d07d0b219d477ea7 195 Gene3D G3DSA:3.40.980.10 2 188 2.0E-51 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS00030 3d92f7e2bbea5b87d07d0b219d477ea7 195 Pfam PF00994 Probable molybdopterin binding domain 8 147 2.3E-29 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS00030 3d92f7e2bbea5b87d07d0b219d477ea7 195 PANTHER PTHR10192 1 187 3.5E-87 T 14-09-2016 PAJ_RS00030 3d92f7e2bbea5b87d07d0b219d477ea7 195 SMART SM00852 7 153 6.8E-22 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS16535 9a53743587f4401e3398becc65fd38f0 297 PANTHER PTHR30465 11 295 2.9E-120 T 14-09-2016 PAJ_RS16535 9a53743587f4401e3398becc65fd38f0 297 PANTHER PTHR30465:SF10 11 295 2.9E-120 T 14-09-2016 PAJ_RS16535 9a53743587f4401e3398becc65fd38f0 297 SUPERFAMILY SSF161098 89 275 4.47E-26 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16535 9a53743587f4401e3398becc65fd38f0 297 Gene3D G3DSA:1.10.3720.10 86 291 3.8E-26 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16535 9a53743587f4401e3398becc65fd38f0 297 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 20 70 6.4E-7 T 14-09-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PAJ_RS16535 9a53743587f4401e3398becc65fd38f0 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 292 8.6E-32 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 Gene3D G3DSA:3.90.25.10 264 336 3.0E-49 T 14-09-2016 PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 Gene3D G3DSA:3.90.25.10 180 232 3.0E-49 T 14-09-2016 PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 334 8.0E-138 T 14-09-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 PANTHER PTHR10366 2 337 4.1E-145 T 14-09-2016 PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 SUPERFAMILY SSF51735 1 334 8.65E-99 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 Gene3D G3DSA:3.40.50.720 1 179 2.9E-53 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 PANTHER PTHR10366:SF39 2 337 4.1E-145 T 14-09-2016 PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 5.7E-5 T 14-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 PRINTS PR01713 Nucleotide sugar epimerase signature 231 246 5.7E-5 T 14-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 5.7E-5 T 14-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PAJ_RS09900 4e556046e928889346b4c0ae80021346 337 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 262 6.0E-60 T 14-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 Gene3D G3DSA:3.40.630.10 5 187 6.1E-73 T 14-09-2016 PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 Gene3D G3DSA:3.40.630.10 316 374 6.1E-73 T 14-09-2016 PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 Gene3D G3DSA:3.30.70.360 188 289 3.7E-32 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 136 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 PANTHER PTHR11014:SF106 4 374 8.4E-99 T 14-09-2016 PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 SUPERFAMILY SSF53187 292 373 1.47E-62 T 14-09-2016 PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 SUPERFAMILY SSF53187 5 178 1.47E-62 T 14-09-2016 PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 SUPERFAMILY SSF55031 179 288 1.79E-27 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 PANTHER PTHR11014 4 374 8.4E-99 T 14-09-2016 PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 373 5.9E-173 T 14-09-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 Pfam PF07687 Peptidase dimerisation domain 175 282 2.5E-23 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 Pfam PF01546 Peptidase family M20/M25/M40 62 371 1.3E-42 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS11525 0856603353fba7d62fa0834b7d8d7828 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 375 51.791 T 14-09-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 2.1E-31 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Pfam PF00679 Elongation factor G C-terminus 611 696 7.8E-29 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PANTHER PTHR23115:SF66 6 184 0.0 T 14-09-2016 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 SUPERFAMILY SSF50447 271 411 5.74E-35 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 SUPERFAMILY SSF54211 486 610 2.78E-39 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 SUPERFAMILY SSF54980 411 488 3.02E-25 T 14-09-2016 IPR009022 Elongation factor G, III-V domain PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Gene3D G3DSA:3.30.230.10 491 609 1.1E-45 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 7.9E-68 T 14-09-2016 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 SMART SM00889 487 609 3.3E-70 T 14-09-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PANTHER PTHR23115 310 702 0.0 T 14-09-2016 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PANTHER PTHR23115 261 289 0.0 T 14-09-2016 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Hamap MF_00054_B Elongation factor G [fusA]. 6 702 110.848 T 14-09-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Pfam PF14492 Elongation Factor G, domain II 411 485 7.8E-34 T 14-09-2016 IPR009022 Elongation factor G, III-V domain PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PANTHER PTHR23115:SF66 310 702 0.0 T 14-09-2016 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PANTHER PTHR23115:SF66 261 289 0.0 T 14-09-2016 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Pfam PF03764 Elongation factor G, domain IV 486 609 9.6E-45 T 14-09-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 SMART SM00838 611 698 6.1E-50 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Gene3D G3DSA:3.40.50.300 6 292 8.8E-105 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.7E-16 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.7E-16 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.7E-16 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.7E-16 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-16 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Pfam PF03144 Elongation factor Tu domain 2 331 398 2.4E-16 T 14-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Gene3D G3DSA:2.40.30.10 312 412 2.9E-37 T 14-09-2016 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 SUPERFAMILY SSF54980 611 700 1.91E-27 T 14-09-2016 IPR009022 Elongation factor G, III-V domain PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Gene3D G3DSA:3.30.70.240 610 696 1.8E-32 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 Gene3D G3DSA:3.30.70.870 413 487 7.9E-39 T 14-09-2016 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 SUPERFAMILY SSF52540 6 287 1.91E-106 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 703 0.0 T 14-09-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 PAJ_RS15885 ecc099663690c549fdbfb3de19524fc6 704 PANTHER PTHR23115 6 184 0.0 T 14-09-2016 PAJ_RS17100 52f49166353be2c37bc0ff2a0e1e847a 248 Pfam PF00970 Oxidoreductase FAD-binding domain 17 90 4.7E-9 T 14-09-2016 IPR008333 Oxidoreductase, FAD-binding domain PAJ_RS17100 52f49166353be2c37bc0ff2a0e1e847a 248 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 7.7E-18 T 14-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PAJ_RS17100 52f49166353be2c37bc0ff2a0e1e847a 248 Gene3D G3DSA:3.40.50.80 96 248 1.1E-45 T 14-09-2016 PAJ_RS17100 52f49166353be2c37bc0ff2a0e1e847a 248 Gene3D G3DSA:2.40.30.10 2 94 2.5E-29 T 14-09-2016 PAJ_RS17100 52f49166353be2c37bc0ff2a0e1e847a 248 PANTHER PTHR19370 4 232 1.3E-100 T 14-09-2016 PAJ_RS17100 52f49166353be2c37bc0ff2a0e1e847a 248 PANTHER PTHR19370:SF98 4 232 1.3E-100 T 14-09-2016 PAJ_RS17100 52f49166353be2c37bc0ff2a0e1e847a 248 SUPERFAMILY SSF52343 103 248 6.68E-37 T 14-09-2016 PAJ_RS17100 52f49166353be2c37bc0ff2a0e1e847a 248 SUPERFAMILY SSF63380 3 99 6.27E-25 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 495 522 1.7E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 572 601 1.7E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 418 447 1.7E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 524 553 1.7E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 SMART SM00283 397 644 6.0E-84 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 Gene3D G3DSA:3.30.450.20 181 317 3.2E-17 T 14-09-2016 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 PANTHER PTHR32089 310 644 7.3E-116 T 14-09-2016 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 454 643 1.1E-55 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 Pfam PF02743 Cache domain 49 303 2.2E-18 T 14-09-2016 IPR033479 Double Cache domain 1 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 PANTHER PTHR32089:SF63 310 644 7.3E-116 T 14-09-2016 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 SUPERFAMILY SSF58104 378 643 3.92E-67 T 14-09-2016 PAJ_RS13440 24347308dfc2640716aae02c5f0462e3 644 Gene3D G3DSA:1.10.287.950 413 616 3.1E-56 T 14-09-2016 PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 1.9E-70 T 14-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 Gene3D G3DSA:3.40.50.300 2 104 2.2E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 Gene3D G3DSA:3.40.50.300 182 279 2.2E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 667 0.0 T 14-09-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 Gene3D G3DSA:1.10.10.160 108 181 2.8E-24 T 14-09-2016 IPR013986 DExx box DNA helicase domain PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 SUPERFAMILY SSF52540 2 636 2.03E-162 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 Gene3D G3DSA:3.40.50.300 550 638 7.8E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 Gene3D G3DSA:3.40.50.300 280 382 7.8E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 Gene3D G3DSA:1.10.486.10 383 524 7.1E-40 T 14-09-2016 PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 41.015 T 14-09-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 PANTHER PTHR11070 1 668 0.0 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 2.3E-73 T 14-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 PAJ_RS18255 7d559813962aae648c9a5fc0a61293ed 673 PANTHER PTHR11070:SF19 1 668 0.0 T 14-09-2016 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 Hamap MF_01694 Biotin synthase [bioB]. 3 311 41.36 T 14-09-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 SMART SM00876 218 310 6.5E-49 T 14-09-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 SMART SM00729 41 253 1.1E-38 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 PANTHER PTHR22976:SF1 3 343 7.1E-193 T 14-09-2016 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 Pfam PF04055 Radical SAM superfamily 48 200 7.8E-16 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 218 308 1.3E-20 T 14-09-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 PIRSF PIRSF001619 1 317 4.4E-137 T 14-09-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 SUPERFAMILY SSF102114 4 310 1.96E-92 T 14-09-2016 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 TIGRFAM TIGR00433 bioB: biotin synthase 12 308 2.1E-123 T 14-09-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 Gene3D G3DSA:3.20.20.70 3 311 1.0E-104 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS02950 acaeef75b43f2654d32968e3c0cc971a 343 PANTHER PTHR22976 3 343 7.1E-193 T 14-09-2016 PAJ_RS18420 8170e14a350d401027f6c0936e0f6e50 350 PANTHER PTHR38457:SF1 2 350 3.2E-70 T 14-09-2016 PAJ_RS18420 8170e14a350d401027f6c0936e0f6e50 350 Pfam PF05145 Putative ammonia monooxygenase 33 341 7.4E-98 T 14-09-2016 IPR007820 AbrB family GO:0010468|GO:0016021 PAJ_RS18420 8170e14a350d401027f6c0936e0f6e50 350 PIRSF PIRSF038991 3 348 5.3E-83 T 14-09-2016 IPR007820 AbrB family GO:0010468|GO:0016021 PAJ_RS18420 8170e14a350d401027f6c0936e0f6e50 350 PANTHER PTHR38457 2 350 3.2E-70 T 14-09-2016 PAJ_RS18420 8170e14a350d401027f6c0936e0f6e50 350 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 10 164 5.8E-42 T 14-09-2016 IPR017516 AbrB duplication PAJ_RS18420 8170e14a350d401027f6c0936e0f6e50 350 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 185 341 6.2E-43 T 14-09-2016 IPR017516 AbrB duplication PAJ_RS16435 11e8e7aeb10c62c8432e34c3d679e6ca 283 PANTHER PTHR30514 6 278 1.5E-85 T 14-09-2016 PAJ_RS16435 11e8e7aeb10c62c8432e34c3d679e6ca 283 SUPERFAMILY SSF53697 119 275 6.88E-27 T 14-09-2016 PAJ_RS16435 11e8e7aeb10c62c8432e34c3d679e6ca 283 Gene3D G3DSA:1.10.10.10 11 85 3.0E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16435 11e8e7aeb10c62c8432e34c3d679e6ca 283 PANTHER PTHR30514:SF3 6 278 1.5E-85 T 14-09-2016 PAJ_RS16435 11e8e7aeb10c62c8432e34c3d679e6ca 283 Pfam PF01418 Helix-turn-helix domain, rpiR family 12 80 6.3E-13 T 14-09-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PAJ_RS16435 11e8e7aeb10c62c8432e34c3d679e6ca 283 Gene3D G3DSA:3.40.50.10490 119 276 2.9E-28 T 14-09-2016 PAJ_RS16435 11e8e7aeb10c62c8432e34c3d679e6ca 283 Pfam PF01380 SIS domain 145 270 2.0E-24 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS16435 11e8e7aeb10c62c8432e34c3d679e6ca 283 SUPERFAMILY SSF46689 12 86 3.76E-19 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS05465 557947730da3025e60c50c946604201b 195 PANTHER PTHR17224:SF1 1 193 8.2E-85 T 14-09-2016 PAJ_RS05465 557947730da3025e60c50c946604201b 195 Pfam PF01195 Peptidyl-tRNA hydrolase 6 188 8.3E-55 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PAJ_RS05465 557947730da3025e60c50c946604201b 195 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 14-09-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 PAJ_RS05465 557947730da3025e60c50c946604201b 195 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 183 36.838 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PAJ_RS05465 557947730da3025e60c50c946604201b 195 Gene3D G3DSA:3.40.50.1470 4 193 1.9E-72 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PAJ_RS05465 557947730da3025e60c50c946604201b 195 PANTHER PTHR17224 1 193 8.2E-85 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PAJ_RS05465 557947730da3025e60c50c946604201b 195 SUPERFAMILY SSF53178 4 193 1.83E-71 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PAJ_RS05465 557947730da3025e60c50c946604201b 195 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 14-09-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 PAJ_RS05465 557947730da3025e60c50c946604201b 195 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 4 190 1.7E-71 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PAJ_RS08615 64fb8da1855d311490d2bbe9483af0a2 469 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 9 436 6.1E-173 T 14-09-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PAJ_RS08615 64fb8da1855d311490d2bbe9483af0a2 469 PANTHER PTHR30011 1 455 2.3E-260 T 14-09-2016 PAJ_RS08615 64fb8da1855d311490d2bbe9483af0a2 469 PANTHER PTHR30011:SF16 1 455 2.3E-260 T 14-09-2016 PAJ_RS08615 64fb8da1855d311490d2bbe9483af0a2 469 SUPERFAMILY SSF51679 4 439 9.94E-128 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS08615 64fb8da1855d311490d2bbe9483af0a2 469 Pfam PF00296 Luciferase-like monooxygenase 35 391 1.1E-51 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS08615 64fb8da1855d311490d2bbe9483af0a2 469 Gene3D G3DSA:3.20.20.30 354 439 1.2E-134 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS08615 64fb8da1855d311490d2bbe9483af0a2 469 Gene3D G3DSA:3.20.20.30 3 317 1.2E-134 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS08615 64fb8da1855d311490d2bbe9483af0a2 469 PIRSF PIRSF000337 4 450 8.3E-145 T 14-09-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 327 343 - T 14-09-2016 IPR013793 Porin, Gram-negative type, conserved site PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 1.7E-65 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 151 173 1.7E-65 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 283 302 1.7E-65 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 1.7E-65 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 244 261 1.7E-65 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 1.7E-65 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 SUPERFAMILY SSF56935 23 375 1.57E-78 T 14-09-2016 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 Pfam PF00267 Gram-negative porin 28 375 5.9E-133 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 327 344 4.7E-18 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 4.7E-18 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 97 107 4.7E-18 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 238 250 4.7E-18 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 4.7E-18 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PANTHER PTHR34501 2 375 3.6E-223 T 14-09-2016 PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 Gene3D G3DSA:2.40.160.10 23 375 8.8E-99 T 14-09-2016 IPR023614 Porin domain PAJ_RS10470 fe59350bb3e37efd52a753c55555dc27 375 PANTHER PTHR34501:SF1 2 375 3.6E-223 T 14-09-2016 PAJ_RS13995 ffe9e18c7a7653f8354df80d5dfff2b5 269 Pfam PF13714 Phosphoenolpyruvate phosphomutase 1 232 1.7E-64 T 14-09-2016 PAJ_RS13995 ffe9e18c7a7653f8354df80d5dfff2b5 269 Gene3D G3DSA:3.20.20.60 1 251 2.1E-66 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS13995 ffe9e18c7a7653f8354df80d5dfff2b5 269 PANTHER PTHR21631:SF23 1 261 1.9E-98 T 14-09-2016 PAJ_RS13995 ffe9e18c7a7653f8354df80d5dfff2b5 269 PANTHER PTHR21631 1 261 1.9E-98 T 14-09-2016 PAJ_RS13995 ffe9e18c7a7653f8354df80d5dfff2b5 269 TIGRFAM TIGR02320 PEP_mutase: phosphoenolpyruvate mutase 1 258 9.9E-110 T 14-09-2016 IPR012698 Phosphoenolpyruvate phosphomutase, core GO:0050188 KEGG: 00440+5.4.2.9|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7419|MetaCyc: PWY-7510 PAJ_RS13995 ffe9e18c7a7653f8354df80d5dfff2b5 269 SUPERFAMILY SSF51621 1 267 1.93E-71 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 Pfam PF00106 short chain dehydrogenase 3 191 6.0E-41 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 182 0.0035 T 14-09-2016 PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PANTHER PTHR24322:SF463 7 130 1.9E-89 T 14-09-2016 PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 Gene3D G3DSA:3.40.50.720 2 252 3.3E-62 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PANTHER PTHR24322 146 178 1.9E-89 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PANTHER PTHR24322 7 130 1.9E-89 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PANTHER PTHR24322:SF463 146 178 1.9E-89 T 14-09-2016 PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 SUPERFAMILY SSF51735 3 255 3.86E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 6.8E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 6.8E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 6.8E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 2.0E-18 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 2.0E-18 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 2.0E-18 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.0E-18 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01970 975b0aee77431128b1afe6a15feac451 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.0E-18 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 435 511 2.2E-20 T 14-09-2016 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 Gene3D G3DSA:3.40.50.300 15 166 5.1E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 2.8E-5 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 2.8E-5 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 PANTHER PTHR11669 1 439 2.4E-183 T 14-09-2016 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 SUPERFAMILY SSF52540 35 221 9.3E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 365 3.6E-34 T 14-09-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 PANTHER PTHR11669:SF0 1 439 2.4E-183 T 14-09-2016 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 Gene3D G3DSA:1.10.8.60 167 242 1.1E-32 T 14-09-2016 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 513 653 3.7E-57 T 14-09-2016 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 SMART SM00382 37 178 8.8E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 SUPERFAMILY SSF48019 243 367 9.35E-35 T 14-09-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 Gene3D G3DSA:1.20.272.10 243 362 8.0E-48 T 14-09-2016 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 356 1.2E-134 T 14-09-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 PAJ_RS01875 595d279bd1867895be9c4a7e2952616c 656 Pfam PF13177 DNA polymerase III, delta subunit 20 178 9.7E-43 T 14-09-2016 PAJ_RS00910 26b25b458b1d642c5af56af3c4c963de 222 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 14-09-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS00910 26b25b458b1d642c5af56af3c4c963de 222 SUPERFAMILY SSF51569 1 218 1.67E-58 T 14-09-2016 PAJ_RS00910 26b25b458b1d642c5af56af3c4c963de 222 Gene3D G3DSA:3.20.20.70 1 216 4.3E-56 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS00910 26b25b458b1d642c5af56af3c4c963de 222 PANTHER PTHR10683:SF15 1 222 2.3E-57 T 14-09-2016 PAJ_RS00910 26b25b458b1d642c5af56af3c4c963de 222 Pfam PF00923 Transaldolase 3 205 2.9E-38 T 14-09-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS00910 26b25b458b1d642c5af56af3c4c963de 222 PANTHER PTHR10683 1 222 2.3E-57 T 14-09-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS13080 1314e53dcb56a3389de8bbd5517e6fb9 131 PANTHER PTHR10584:SF191 1 67 1.9E-18 T 14-09-2016 PAJ_RS13080 1314e53dcb56a3389de8bbd5517e6fb9 131 PANTHER PTHR10584 1 67 1.9E-18 T 14-09-2016 PAJ_RS13080 1314e53dcb56a3389de8bbd5517e6fb9 131 Pfam PF04241 Protein of unknown function (DUF423) 20 106 4.5E-22 T 14-09-2016 IPR006696 Protein of unknown function DUF423 PAJ_RS17270 937e923a2210cff185c19824ae2932b7 424 SUPERFAMILY SSF53756 57 417 2.04E-16 T 14-09-2016 PAJ_RS17270 937e923a2210cff185c19824ae2932b7 424 PANTHER PTHR23417 189 424 6.3E-144 T 14-09-2016 PAJ_RS17270 937e923a2210cff185c19824ae2932b7 424 PANTHER PTHR23417 129 139 6.3E-144 T 14-09-2016 PAJ_RS17270 937e923a2210cff185c19824ae2932b7 424 PANTHER PTHR23417 1 110 6.3E-144 T 14-09-2016 PAJ_RS17270 937e923a2210cff185c19824ae2932b7 424 PANTHER PTHR23417:SF2 129 139 6.3E-144 T 14-09-2016 PAJ_RS17270 937e923a2210cff185c19824ae2932b7 424 PANTHER PTHR23417:SF2 1 110 6.3E-144 T 14-09-2016 PAJ_RS17270 937e923a2210cff185c19824ae2932b7 424 Pfam PF00534 Glycosyl transferases group 1 258 398 1.0E-11 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 PAJ_RS17270 937e923a2210cff185c19824ae2932b7 424 PANTHER PTHR23417:SF2 189 424 6.3E-144 T 14-09-2016 PAJ_RS17270 937e923a2210cff185c19824ae2932b7 424 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 32 210 3.9E-66 T 14-09-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 PAJ_RS14725 5cc7170dc948c1bfcd07b6ddfe90d3d5 359 SUPERFAMILY SSF88874 209 358 2.49E-31 T 14-09-2016 PAJ_RS14725 5cc7170dc948c1bfcd07b6ddfe90d3d5 359 PANTHER PTHR35191 1 158 1.5E-55 T 14-09-2016 PAJ_RS14725 5cc7170dc948c1bfcd07b6ddfe90d3d5 359 Pfam PF12571 Phage tail-collar fibre protein 1 150 4.3E-62 T 14-09-2016 IPR022225 Phage tail fibre protein PAJ_RS14725 5cc7170dc948c1bfcd07b6ddfe90d3d5 359 Gene3D G3DSA:3.90.1340.10 210 274 4.5E-5 T 14-09-2016 IPR011083 Phage tail collar domain PAJ_RS14725 5cc7170dc948c1bfcd07b6ddfe90d3d5 359 Pfam PF07484 Phage Tail Collar Domain 213 269 2.6E-5 T 14-09-2016 IPR011083 Phage tail collar domain PAJ_RS02585 c542812fe109304c130c7f777caf35f6 382 PANTHER PTHR11113 1 382 8.8E-166 T 14-09-2016 PAJ_RS02585 c542812fe109304c130c7f777caf35f6 382 Pfam PF01979 Amidohydrolase family 50 379 5.0E-48 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 PAJ_RS02585 c542812fe109304c130c7f777caf35f6 382 PANTHER PTHR11113:SF7 1 382 8.8E-166 T 14-09-2016 PAJ_RS02585 c542812fe109304c130c7f777caf35f6 382 PIRSF PIRSF038994 1 382 2.9E-121 T 14-09-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 PAJ_RS02585 c542812fe109304c130c7f777caf35f6 382 SUPERFAMILY SSF51338 1 53 6.72E-16 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS02585 c542812fe109304c130c7f777caf35f6 382 Gene3D G3DSA:2.30.40.10 350 366 4.5E-10 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS02585 c542812fe109304c130c7f777caf35f6 382 Gene3D G3DSA:2.30.40.10 2 54 4.5E-10 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS02585 c542812fe109304c130c7f777caf35f6 382 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 376 2.1E-158 T 14-09-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 PAJ_RS02585 c542812fe109304c130c7f777caf35f6 382 SUPERFAMILY SSF51556 54 350 6.41E-104 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS02585 c542812fe109304c130c7f777caf35f6 382 Gene3D G3DSA:3.20.20.140 55 349 1.4E-100 T 14-09-2016 PAJ_RS01825 735f0b2f7a6b4bc39573e58bd1745107 279 PANTHER PTHR30477:SF3 1 279 4.1E-62 T 14-09-2016 PAJ_RS01825 735f0b2f7a6b4bc39573e58bd1745107 279 Pfam PF00950 ABC 3 transport family 10 268 7.1E-50 T 14-09-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 PAJ_RS01825 735f0b2f7a6b4bc39573e58bd1745107 279 PANTHER PTHR30477 1 279 4.1E-62 T 14-09-2016 PAJ_RS01825 735f0b2f7a6b4bc39573e58bd1745107 279 SUPERFAMILY SSF81345 6 266 3.53E-23 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 150 2.5E-28 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 3.8E-10 T 14-09-2016 IPR027399 Alcohol dehydrogenase GroES-associated PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 Gene3D G3DSA:3.90.180.10 137 186 1.7E-36 T 14-09-2016 IPR011032 GroES-like PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 Gene3D G3DSA:3.90.180.10 1 88 1.7E-36 T 14-09-2016 IPR011032 GroES-like PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 PANTHER PTHR11695:SF281 288 397 3.4E-164 T 14-09-2016 PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 PANTHER PTHR11695:SF281 12 106 3.4E-164 T 14-09-2016 PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 PANTHER PTHR11695:SF281 127 266 3.4E-164 T 14-09-2016 PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 SUPERFAMILY SSF51735 164 350 5.84E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 SUPERFAMILY SSF50129 1 185 8.37E-57 T 14-09-2016 IPR011032 GroES-like PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 PANTHER PTHR11695 288 397 3.4E-164 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 PANTHER PTHR11695 12 106 3.4E-164 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 PANTHER PTHR11695 127 266 3.4E-164 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 14-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PAJ_RS02345 1ea4429e319c3274681e7d66528c3c4c 397 Gene3D G3DSA:3.40.50.720 187 344 6.0E-60 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 SUPERFAMILY SSF143975 3 420 1.09E-132 T 14-09-2016 PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 Pfam PF00920 Dehydratase family 34 607 4.5E-215 T 14-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 PANTHER PTHR21000:SF11 406 616 0.0 T 14-09-2016 PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 14-09-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 14-09-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 44.885 T 14-09-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 PANTHER PTHR21000 1 371 0.0 T 14-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 PANTHER PTHR21000 406 616 0.0 T 14-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 PANTHER PTHR21000:SF11 1 371 0.0 T 14-09-2016 PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 SUPERFAMILY SSF52016 421 610 2.98E-60 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PAJ_RS16875 96b39e5e13b1d32595f55cbbd4872fc3 616 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 3.4E-263 T 14-09-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 Hamap MF_00550 Peptidase T [pepT]. 1 404 53.927 T 14-09-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 404 7.3E-150 T 14-09-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 Pfam PF07687 Peptidase dimerisation domain 205 302 1.4E-9 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 PIRSF PIRSF037215 1 408 9.3E-178 T 14-09-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 PANTHER PTHR11014:SF3 2 91 2.7E-184 T 14-09-2016 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 PANTHER PTHR11014:SF3 131 409 2.7E-184 T 14-09-2016 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 Pfam PF01546 Peptidase family M20/M25/M40 139 401 6.4E-14 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 Gene3D G3DSA:3.40.630.10 1 208 5.4E-112 T 14-09-2016 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 Gene3D G3DSA:3.40.630.10 322 405 5.4E-112 T 14-09-2016 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 PANTHER PTHR11014 2 91 2.7E-184 T 14-09-2016 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 PANTHER PTHR11014 131 409 2.7E-184 T 14-09-2016 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 Gene3D G3DSA:3.30.70.360 209 319 1.3E-43 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 SUPERFAMILY SSF55031 208 319 7.85E-40 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 SUPERFAMILY SSF53187 322 402 1.94E-75 T 14-09-2016 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 SUPERFAMILY SSF53187 1 209 1.94E-75 T 14-09-2016 PAJ_RS04670 a0e6b48124b680883954bd9ba651f88f 409 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 138 176 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PAJ_RS03840 4e580efb4aad7625df13cb7129ae699f 208 PANTHER PTHR36121 1 197 1.4E-41 T 14-09-2016 PAJ_RS03840 4e580efb4aad7625df13cb7129ae699f 208 PANTHER PTHR36121:SF1 1 197 1.4E-41 T 14-09-2016 PAJ_RS03840 4e580efb4aad7625df13cb7129ae699f 208 PIRSF PIRSF028788 1 207 1.7E-53 T 14-09-2016 IPR026256 Transcriptional regulator, TfoX/Sxy-type PAJ_RS03840 4e580efb4aad7625df13cb7129ae699f 208 SUPERFAMILY SSF159894 11 106 4.45E-24 T 14-09-2016 PAJ_RS03840 4e580efb4aad7625df13cb7129ae699f 208 Gene3D G3DSA:3.30.1460.30 7 107 7.0E-29 T 14-09-2016 IPR007076 TfoX, N-terminal PAJ_RS03840 4e580efb4aad7625df13cb7129ae699f 208 Pfam PF04994 TfoX C-terminal domain 117 193 6.5E-25 T 14-09-2016 IPR007077 TfoX, C-terminal PAJ_RS03840 4e580efb4aad7625df13cb7129ae699f 208 Gene3D G3DSA:1.10.150.20 117 198 1.7E-28 T 14-09-2016 PAJ_RS03840 4e580efb4aad7625df13cb7129ae699f 208 Pfam PF04993 TfoX N-terminal domain 13 104 3.8E-25 T 14-09-2016 IPR007076 TfoX, N-terminal PAJ_RS01250 d1452c60eacbca1ad1c0451e82c0c558 356 Gene3D G3DSA:3.40.50.10440 12 182 1.6E-67 T 14-09-2016 PAJ_RS01250 d1452c60eacbca1ad1c0451e82c0c558 356 Gene3D G3DSA:3.30.1180.20 185 355 1.4E-66 T 14-09-2016 PAJ_RS01250 d1452c60eacbca1ad1c0451e82c0c558 356 PANTHER PTHR28629:SF2 261 356 8.9E-166 T 14-09-2016 PAJ_RS01250 d1452c60eacbca1ad1c0451e82c0c558 356 PANTHER PTHR28629:SF2 1 243 8.9E-166 T 14-09-2016 PAJ_RS01250 d1452c60eacbca1ad1c0451e82c0c558 356 PANTHER PTHR28629 261 356 8.9E-166 T 14-09-2016 PAJ_RS01250 d1452c60eacbca1ad1c0451e82c0c558 356 PANTHER PTHR28629 1 243 8.9E-166 T 14-09-2016 PAJ_RS01250 d1452c60eacbca1ad1c0451e82c0c558 356 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 352 1.5E-150 T 14-09-2016 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 KEGG: 00563+2.7.-.-|UniPathway: UPA00616 PAJ_RS01250 d1452c60eacbca1ad1c0451e82c0c558 356 Pfam PF02733 Dak1 domain 18 351 4.0E-125 T 14-09-2016 IPR004006 DhaK domain GO:0004371|GO:0006071 PAJ_RS01250 d1452c60eacbca1ad1c0451e82c0c558 356 SUPERFAMILY SSF82549 10 355 6.02E-123 T 14-09-2016 PAJ_RS14240 712a5a93e8bbd7072ad25448eb968af9 355 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS14240 712a5a93e8bbd7072ad25448eb968af9 355 PANTHER PTHR24220 5 238 4.2E-112 T 14-09-2016 PAJ_RS14240 712a5a93e8bbd7072ad25448eb968af9 355 PANTHER PTHR24220:SF151 5 238 4.2E-112 T 14-09-2016 PAJ_RS14240 712a5a93e8bbd7072ad25448eb968af9 355 Pfam PF00005 ABC transporter 19 165 4.2E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS14240 712a5a93e8bbd7072ad25448eb968af9 355 SMART SM00382 28 215 3.1E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS14240 712a5a93e8bbd7072ad25448eb968af9 355 SUPERFAMILY SSF52540 4 243 3.55E-78 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS14240 712a5a93e8bbd7072ad25448eb968af9 355 Gene3D G3DSA:3.40.50.300 3 238 1.0E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS14240 712a5a93e8bbd7072ad25448eb968af9 355 Pfam PF08402 TOBE domain 290 352 4.6E-5 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PAJ_RS04075 88f478dd5abde318cd3f94ec83cad636 337 Pfam PF06147 Protein of unknown function (DUF968) 132 330 7.7E-74 T 14-09-2016 IPR010373 Protein of unknown function DUF968 PAJ_RS04075 88f478dd5abde318cd3f94ec83cad636 337 SMART SM00507 250 299 4.3E-6 T 14-09-2016 IPR003615 HNH nuclease PAJ_RS02375 8a030e30e353b6fa07973f6383378953 438 PANTHER PTHR30354 1 438 0.0 T 14-09-2016 PAJ_RS02375 8a030e30e353b6fa07973f6383378953 438 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 438 4.2E-197 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PAJ_RS02375 8a030e30e353b6fa07973f6383378953 438 PANTHER PTHR30354:SF4 1 438 0.0 T 14-09-2016 PAJ_RS02375 8a030e30e353b6fa07973f6383378953 438 Pfam PF02447 GntP family permease 1 436 2.7E-182 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PAJ_RS02375 8a030e30e353b6fa07973f6383378953 438 PIRSF PIRSF002746 1 438 4.4E-159 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PAJ_RS14090 897e15df52be992fbe373ffe2979749d 298 SUPERFAMILY SSF103481 191 284 5.89E-8 T 14-09-2016 PAJ_RS14090 897e15df52be992fbe373ffe2979749d 298 SUPERFAMILY SSF103481 44 145 2.42E-10 T 14-09-2016 PAJ_RS14090 897e15df52be992fbe373ffe2979749d 298 PANTHER PTHR22911 12 296 1.0E-35 T 14-09-2016 PAJ_RS14090 897e15df52be992fbe373ffe2979749d 298 Pfam PF00892 EamA-like transporter family 12 143 2.5E-12 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS14090 897e15df52be992fbe373ffe2979749d 298 Pfam PF00892 EamA-like transporter family 155 281 2.5E-7 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 SMART SM01058 476 573 3.4E-50 T 14-09-2016 IPR003711 CarD-like/TRCF domain PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 SUPERFAMILY SSF141259 467 545 5.89E-24 T 14-09-2016 IPR003711 CarD-like/TRCF domain PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 SUPERFAMILY SSF143517 992 1144 4.18E-42 T 14-09-2016 PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 SUPERFAMILY SSF52540 10 341 4.96E-100 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 SMART SM00982 1005 1105 6.4E-49 T 14-09-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 Gene3D G3DSA:3.40.50.300 585 783 8.9E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 31 1125 28.852 T 14-09-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 Pfam PF02559 CarD-like/TRCF domain 477 572 2.6E-24 T 14-09-2016 IPR003711 CarD-like/TRCF domain PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 Gene3D G3DSA:3.40.50.300 788 960 1.8E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 SMART SM00490 823 907 6.6E-20 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 Pfam PF03461 TRCF domain 1006 1098 2.0E-28 T 14-09-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 Pfam PF00271 Helicase conserved C-terminal domain 803 906 2.5E-18 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 Gene3D G3DSA:3.30.2060.10 130 203 5.9E-14 T 14-09-2016 PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 Pfam PF00270 DEAD/DEAH box helicase 602 762 5.9E-20 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1079 0.0 T 14-09-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 SUPERFAMILY SSF52540 779 987 1.96E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 SUPERFAMILY SSF52540 520 780 1.43E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 SMART SM00487 597 787 6.6E-33 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 PANTHER PTHR14025 383 1149 0.0 T 14-09-2016 PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 SUPERFAMILY SSF52540 351 463 8.5E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04645 399e6c88b048c55e2ebdd295bd624287 1149 PANTHER PTHR14025:SF21 383 1149 0.0 T 14-09-2016 PAJ_RS20155 5dbf6ec6c3f84a02d2bad01eebe42ff2 316 SUPERFAMILY SSF53822 33 311 8.25E-69 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS20155 5dbf6ec6c3f84a02d2bad01eebe42ff2 316 Gene3D G3DSA:3.40.50.2300 149 301 1.7E-44 T 14-09-2016 PAJ_RS20155 5dbf6ec6c3f84a02d2bad01eebe42ff2 316 Gene3D G3DSA:3.40.50.2300 33 148 3.2E-29 T 14-09-2016 PAJ_RS20155 5dbf6ec6c3f84a02d2bad01eebe42ff2 316 PANTHER PTHR32196:SF9 32 314 7.2E-41 T 14-09-2016 PAJ_RS20155 5dbf6ec6c3f84a02d2bad01eebe42ff2 316 PANTHER PTHR32196 32 314 7.2E-41 T 14-09-2016 PAJ_RS20155 5dbf6ec6c3f84a02d2bad01eebe42ff2 316 Pfam PF13407 Periplasmic binding protein domain 42 290 7.8E-55 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS17815 671b6b42289ee2c72822a1dabaac760f 433 PANTHER PTHR23508:SF14 8 422 1.1E-250 T 14-09-2016 PAJ_RS17815 671b6b42289ee2c72822a1dabaac760f 433 ProSitePatterns PS00216 Sugar transport proteins signature 1. 294 311 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS17815 671b6b42289ee2c72822a1dabaac760f 433 SUPERFAMILY SSF103473 16 422 3.14E-63 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS17815 671b6b42289ee2c72822a1dabaac760f 433 PANTHER PTHR23508 8 422 1.1E-250 T 14-09-2016 PAJ_RS17815 671b6b42289ee2c72822a1dabaac760f 433 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 23 413 3.4E-142 T 14-09-2016 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 PAJ_RS17815 671b6b42289ee2c72822a1dabaac760f 433 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS17815 671b6b42289ee2c72822a1dabaac760f 433 Pfam PF07690 Major Facilitator Superfamily 22 373 2.6E-26 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS17815 671b6b42289ee2c72822a1dabaac760f 433 ProSitePatterns PS00216 Sugar transport proteins signature 1. 76 92 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS17815 671b6b42289ee2c72822a1dabaac760f 433 Gene3D G3DSA:1.20.1250.20 17 218 2.0E-25 T 14-09-2016 PAJ_RS17815 671b6b42289ee2c72822a1dabaac760f 433 Gene3D G3DSA:1.20.1250.20 240 421 4.3E-20 T 14-09-2016 PAJ_RS12860 00f0298cf23575d4fc6ed0fcdb58fb5d 201 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 10 193 1.8E-85 T 14-09-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 PAJ_RS12860 00f0298cf23575d4fc6ed0fcdb58fb5d 201 SUPERFAMILY SSF52540 24 196 3.57E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12860 00f0298cf23575d4fc6ed0fcdb58fb5d 201 PANTHER PTHR11055 3 199 9.0E-133 T 14-09-2016 PAJ_RS12860 00f0298cf23575d4fc6ed0fcdb58fb5d 201 Pfam PF01583 Adenylylsulphate kinase 27 179 2.0E-72 T 14-09-2016 PAJ_RS12860 00f0298cf23575d4fc6ed0fcdb58fb5d 201 Gene3D G3DSA:3.40.50.300 6 200 3.8E-88 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12860 00f0298cf23575d4fc6ed0fcdb58fb5d 201 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 26 197 38.368 T 14-09-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 SMART SM00434 12 462 2.5E-234 T 14-09-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 1.5E-133 T 14-09-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 Gene3D G3DSA:3.30.1360.40 239 332 1.5E-24 T 14-09-2016 IPR024946 Arginine repressor C-terminal-like domain PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 9 743 0.0 T 14-09-2016 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 743 34.047 T 14-09-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 Gene3D G3DSA:2.120.10.90 497 734 2.2E-24 T 14-09-2016 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 PANTHER PTHR10169:SF30 3 523 0.0 T 14-09-2016 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 695 1.1E-8 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 597 639 0.003 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 Gene3D G3DSA:3.90.199.10 31 238 1.3E-104 T 14-09-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 Gene3D G3DSA:3.90.199.10 334 398 1.3E-104 T 14-09-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 SUPERFAMILY SSF56719 32 483 1.96E-153 T 14-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 PANTHER PTHR10169 3 523 0.0 T 14-09-2016 PAJ_RS14475 d86a01a941dd3b3ab0f49438e6ba66f0 757 SUPERFAMILY SSF101904 498 741 3.4E-52 T 14-09-2016 PAJ_RS08745 57f4dbf1c7b47abedb851228d49907e1 469 Gene3D G3DSA:3.40.50.980 8 140 1.3E-14 T 14-09-2016 PAJ_RS08745 57f4dbf1c7b47abedb851228d49907e1 469 Gene3D G3DSA:3.40.50.980 141 292 5.7E-27 T 14-09-2016 PAJ_RS08745 57f4dbf1c7b47abedb851228d49907e1 469 Gene3D G3DSA:2.30.38.10 298 375 1.6E-11 T 14-09-2016 PAJ_RS08745 57f4dbf1c7b47abedb851228d49907e1 469 Gene3D G3DSA:3.30.300.30 377 464 2.9E-5 T 14-09-2016 PAJ_RS08745 57f4dbf1c7b47abedb851228d49907e1 469 Pfam PF00501 AMP-binding enzyme 5 381 1.1E-51 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PAJ_RS08745 57f4dbf1c7b47abedb851228d49907e1 469 ProSitePatterns PS00455 Putative AMP-binding domain signature. 131 142 - T 14-09-2016 IPR020845 AMP-binding, conserved site PAJ_RS08745 57f4dbf1c7b47abedb851228d49907e1 469 PANTHER PTHR24096 3 411 2.4E-42 T 14-09-2016 PAJ_RS08745 57f4dbf1c7b47abedb851228d49907e1 469 SUPERFAMILY SSF56801 3 464 2.62E-80 T 14-09-2016 PAJ_RS11700 9839696a2495d11438461b105c471083 477 Pfam PF00571 CBS domain 226 280 1.6E-7 T 14-09-2016 IPR000644 CBS domain PAJ_RS11700 9839696a2495d11438461b105c471083 477 PANTHER PTHR41394:SF1 267 474 1.9E-42 T 14-09-2016 PAJ_RS11700 9839696a2495d11438461b105c471083 477 Pfam PF03448 MgtE intracellular N domain 59 160 6.9E-21 T 14-09-2016 IPR006668 Magnesium transporter, MgtE intracellular domain PAJ_RS11700 9839696a2495d11438461b105c471083 477 SUPERFAMILY SSF158791 46 158 8.76E-21 T 14-09-2016 PAJ_RS11700 9839696a2495d11438461b105c471083 477 Gene3D G3DSA:1.10.357.20 303 474 1.5E-54 T 14-09-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 PAJ_RS11700 9839696a2495d11438461b105c471083 477 Gene3D G3DSA:3.10.580.10 154 286 7.1E-19 T 14-09-2016 PAJ_RS11700 9839696a2495d11438461b105c471083 477 Gene3D G3DSA:1.25.60.10 48 153 5.9E-19 T 14-09-2016 PAJ_RS11700 9839696a2495d11438461b105c471083 477 SMART SM00116 233 281 0.02 T 14-09-2016 IPR000644 CBS domain PAJ_RS11700 9839696a2495d11438461b105c471083 477 SMART SM00116 169 222 42.0 T 14-09-2016 IPR000644 CBS domain PAJ_RS11700 9839696a2495d11438461b105c471083 477 TIGRFAM TIGR00400 mgtE: magnesium transporter 52 474 1.1E-74 T 14-09-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 PAJ_RS11700 9839696a2495d11438461b105c471083 477 SUPERFAMILY SSF161093 303 474 2.88E-49 T 14-09-2016 PAJ_RS11700 9839696a2495d11438461b105c471083 477 PANTHER PTHR41394 267 474 1.9E-42 T 14-09-2016 PAJ_RS11700 9839696a2495d11438461b105c471083 477 SUPERFAMILY SSF54631 161 301 1.34E-26 T 14-09-2016 PAJ_RS11700 9839696a2495d11438461b105c471083 477 SMART SM00924 59 162 1.1E-25 T 14-09-2016 IPR006668 Magnesium transporter, MgtE intracellular domain PAJ_RS11700 9839696a2495d11438461b105c471083 477 Pfam PF01769 Divalent cation transporter 346 468 7.6E-26 T 14-09-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 PAJ_RS06205 4237c7ed9d9eec4d63e162cf8d352f99 211 Pfam PF04205 FMN-binding domain 101 188 1.4E-18 T 14-09-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 PAJ_RS06205 4237c7ed9d9eec4d63e162cf8d352f99 211 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 10 192 1.7E-66 T 14-09-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 PAJ_RS06205 4237c7ed9d9eec4d63e162cf8d352f99 211 PANTHER PTHR36118 2 211 3.7E-75 T 14-09-2016 PAJ_RS06205 4237c7ed9d9eec4d63e162cf8d352f99 211 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 3 195 26.563 T 14-09-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 PAJ_RS06205 4237c7ed9d9eec4d63e162cf8d352f99 211 SMART SM00900 101 193 1.4E-34 T 14-09-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 PAJ_RS06205 4237c7ed9d9eec4d63e162cf8d352f99 211 PANTHER PTHR36118:SF1 2 211 3.7E-75 T 14-09-2016 PAJ_RS06205 4237c7ed9d9eec4d63e162cf8d352f99 211 PIRSF PIRSF006091 1 205 3.3E-71 T 14-09-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 PAJ_RS11390 872dd83d542de362640ce8f7ed674ab2 285 PANTHER PTHR30404:SF2 34 281 1.6E-141 T 14-09-2016 PAJ_RS11390 872dd83d542de362640ce8f7ed674ab2 285 SUPERFAMILY SSF53187 201 277 1.1E-52 T 14-09-2016 PAJ_RS11390 872dd83d542de362640ce8f7ed674ab2 285 SUPERFAMILY SSF53187 57 153 1.1E-52 T 14-09-2016 PAJ_RS11390 872dd83d542de362640ce8f7ed674ab2 285 Gene3D G3DSA:3.40.630.40 202 278 1.6E-57 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PAJ_RS11390 872dd83d542de362640ce8f7ed674ab2 285 Gene3D G3DSA:3.40.630.40 57 154 1.6E-57 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PAJ_RS11390 872dd83d542de362640ce8f7ed674ab2 285 SMART SM00646 119 274 9.1E-62 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PAJ_RS11390 872dd83d542de362640ce8f7ed674ab2 285 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 59 274 8.2E-50 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PAJ_RS11390 872dd83d542de362640ce8f7ed674ab2 285 PANTHER PTHR30404 34 281 1.6E-141 T 14-09-2016 PAJ_RS04510 67185aeea5afcc68829950726e1c7418 318 SUPERFAMILY SSF55174 19 70 1.77E-9 T 14-09-2016 PAJ_RS04510 67185aeea5afcc68829950726e1c7418 318 SUPERFAMILY SSF55120 95 314 1.57E-65 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS04510 67185aeea5afcc68829950726e1c7418 318 Gene3D G3DSA:3.10.290.10 20 68 3.3E-8 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS04510 67185aeea5afcc68829950726e1c7418 318 SMART SM00363 20 79 2.8E-10 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS04510 67185aeea5afcc68829950726e1c7418 318 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 314 5.7E-95 T 14-09-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS04510 67185aeea5afcc68829950726e1c7418 318 PANTHER PTHR11079:SF84 1 316 6.2E-161 T 14-09-2016 PAJ_RS04510 67185aeea5afcc68829950726e1c7418 318 PANTHER PTHR11079 1 316 6.2E-161 T 14-09-2016 PAJ_RS04510 67185aeea5afcc68829950726e1c7418 318 Pfam PF00849 RNA pseudouridylate synthase 101 248 7.4E-31 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS04510 67185aeea5afcc68829950726e1c7418 318 Pfam PF01479 S4 domain 20 66 2.6E-11 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS04510 67185aeea5afcc68829950726e1c7418 318 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 140 154 - T 14-09-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 PANTHER PTHR10055 2 334 7.5E-191 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 SUPERFAMILY SSF52374 5 330 5.3E-100 T 14-09-2016 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 330 6.3E-119 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 Gene3D G3DSA:3.40.50.620 4 205 6.7E-91 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 Gene3D G3DSA:1.10.240.10 206 324 1.1E-20 T 14-09-2016 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 331 42.596 T 14-09-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 Pfam PF00579 tRNA synthetases class I (W and Y) 3 285 8.7E-89 T 14-09-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 1.4E-29 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 1.4E-29 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 1.4E-29 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 1.4E-29 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PAJ_RS16045 f5a75a8ab23829fb753b513d5a88e848 334 PANTHER PTHR10055:SF10 2 334 7.5E-191 T 14-09-2016 PAJ_RS09095 4455923dfb1557e0ce58c72d3921fb70 367 Pfam PF02378 Phosphotransferase system, EIIC 14 286 3.3E-12 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS09095 4455923dfb1557e0ce58c72d3921fb70 367 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 4 337 3.1E-62 T 14-09-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 PAJ_RS09095 4455923dfb1557e0ce58c72d3921fb70 367 PANTHER PTHR30505 1 366 1.3E-87 T 14-09-2016 PAJ_RS09095 4455923dfb1557e0ce58c72d3921fb70 367 PANTHER PTHR30505:SF11 1 366 1.3E-87 T 14-09-2016 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 SMART SM00388 488 553 3.7E-7 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 SMART SM00448 732 842 1.1E-15 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 Gene3D G3DSA:3.40.50.2300 732 850 1.9E-25 T 14-09-2016 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 PANTHER PTHR24423:SF544 28 33 3.5E-140 T 14-09-2016 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 SUPERFAMILY SSF158472 319 362 3.4E-8 T 14-09-2016 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 SMART SM00304 314 367 8.5E-8 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 PRINTS PR00344 Bacterial sensor protein C-terminal signature 671 689 8.7E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 PRINTS PR00344 Bacterial sensor protein C-terminal signature 695 708 8.7E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 PRINTS PR00344 Bacterial sensor protein C-terminal signature 658 668 8.7E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 PRINTS PR00344 Bacterial sensor protein C-terminal signature 640 654 8.7E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 Gene3D G3DSA:3.30.450.20 368 471 6.3E-6 T 14-09-2016 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 Gene3D G3DSA:3.30.565.10 528 712 7.1E-35 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 PANTHER PTHR24423 264 283 3.5E-140 T 14-09-2016 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 595 709 4.4E-21 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 SUPERFAMILY SSF52172 732 857 6.4E-25 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 PANTHER PTHR24423:SF544 375 856 3.5E-140 T 14-09-2016 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 Pfam PF00672 HAMP domain 295 361 2.1E-12 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 Pfam PF00072 Response regulator receiver domain 734 842 3.4E-13 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 PANTHER PTHR24423 28 33 3.5E-140 T 14-09-2016 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 SUPERFAMILY SSF55785 367 459 6.28E-5 T 14-09-2016 IPR000014 PAS domain PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 PANTHER PTHR24423 375 856 3.5E-140 T 14-09-2016 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 PANTHER PTHR24423:SF544 264 283 3.5E-140 T 14-09-2016 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 SUPERFAMILY SSF47384 483 550 2.75E-8 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 SMART SM00387 594 711 3.6E-29 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 SUPERFAMILY SSF55874 544 712 1.96E-36 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS09370 3e75cea0714bd1eda839b3437b3b7583 866 Pfam PF00512 His Kinase A (phospho-acceptor) domain 489 551 2.6E-6 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS19215 1c74c874135be3bc4d39ad4691cf1799 291 PANTHER PTHR12862:SF5 5 284 2.0E-36 T 14-09-2016 PAJ_RS19215 1c74c874135be3bc4d39ad4691cf1799 291 PANTHER PTHR12862 5 284 2.0E-36 T 14-09-2016 PAJ_RS19215 1c74c874135be3bc4d39ad4691cf1799 291 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 7 284 2.5E-32 T 14-09-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type PAJ_RS19215 1c74c874135be3bc4d39ad4691cf1799 291 Gene3D G3DSA:3.30.420.40 206 269 2.9E-4 T 14-09-2016 PAJ_RS19215 1c74c874135be3bc4d39ad4691cf1799 291 Gene3D G3DSA:3.30.420.40 3 91 7.7E-5 T 14-09-2016 PAJ_RS19215 1c74c874135be3bc4d39ad4691cf1799 291 SUPERFAMILY SSF53067 3 112 1.75E-22 T 14-09-2016 PAJ_RS19215 1c74c874135be3bc4d39ad4691cf1799 291 SUPERFAMILY SSF53067 116 284 8.19E-37 T 14-09-2016 PAJ_RS05980 ff14283245f02ece5b0a14f1332b57c4 298 Pfam PF00248 Aldo/keto reductase family 16 291 1.3E-57 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS05980 ff14283245f02ece5b0a14f1332b57c4 298 PRINTS PR00069 Aldo-keto reductase signature 112 130 2.2E-5 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS05980 ff14283245f02ece5b0a14f1332b57c4 298 PRINTS PR00069 Aldo-keto reductase signature 143 160 2.2E-5 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS05980 ff14283245f02ece5b0a14f1332b57c4 298 SUPERFAMILY SSF51430 8 295 2.36E-71 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS05980 ff14283245f02ece5b0a14f1332b57c4 298 PANTHER PTHR11732:SF10 2 298 1.6E-146 T 14-09-2016 PAJ_RS05980 ff14283245f02ece5b0a14f1332b57c4 298 Gene3D G3DSA:3.20.20.100 9 292 1.4E-65 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS05980 ff14283245f02ece5b0a14f1332b57c4 298 PANTHER PTHR11732 2 298 1.6E-146 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 SUPERFAMILY SSF49354 23 144 5.23E-38 T 14-09-2016 IPR008962 PapD-like PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 Gene3D G3DSA:2.60.40.360 28 145 4.3E-44 T 14-09-2016 IPR008962 PapD-like PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 SUPERFAMILY SSF49584 153 240 9.42E-20 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 Gene3D G3DSA:2.60.40.1070 153 239 6.9E-24 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 PANTHER PTHR30251:SF6 1 236 9.7E-98 T 14-09-2016 PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 PRINTS PR00969 Pili chaperone signature 103 120 4.5E-30 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 PRINTS PR00969 Pili chaperone signature 74 95 4.5E-30 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 PRINTS PR00969 Pili chaperone signature 162 177 4.5E-30 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 PRINTS PR00969 Pili chaperone signature 126 141 4.5E-30 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 PRINTS PR00969 Pili chaperone signature 28 37 4.5E-30 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 167 227 1.1E-14 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 28 145 5.2E-38 T 14-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PAJ_RS02260 f44b0ef864e45e899cb77474f253f2bd 246 PANTHER PTHR30251 1 236 9.7E-98 T 14-09-2016 PAJ_RS18195 e071c3fef3ef7d4394a6d3737f7d6850 148 Pfam PF03500 Cellulose synthase subunit D 30 133 4.0E-10 T 14-09-2016 IPR022798 Cellulose synthase subunit D, bacterial UniPathway: UPA00694 PAJ_RS01740 86d84c438abd0599a8b312254e8eabd2 107 Pfam PF12836 Helix-hairpin-helix motif 43 105 7.2E-18 T 14-09-2016 PAJ_RS01740 86d84c438abd0599a8b312254e8eabd2 107 PANTHER PTHR21180 3 105 8.5E-23 T 14-09-2016 PAJ_RS01740 86d84c438abd0599a8b312254e8eabd2 107 Gene3D G3DSA:1.10.150.280 34 102 5.0E-14 T 14-09-2016 PAJ_RS01740 86d84c438abd0599a8b312254e8eabd2 107 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 45 106 2.4E-28 T 14-09-2016 IPR004509 Competence protein ComEA, helix-hairpin-helix domain PAJ_RS01740 86d84c438abd0599a8b312254e8eabd2 107 SUPERFAMILY SSF47781 34 104 3.67E-22 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 Pfam PF13365 Trypsin-like peptidase domain 78 212 2.2E-29 T 14-09-2016 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 Pfam PF13180 PDZ domain 254 344 6.0E-17 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 Gene3D G3DSA:2.40.10.10 37 141 1.8E-31 T 14-09-2016 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 SMART SM00228 254 336 1.1E-11 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 SUPERFAMILY SSF50156 237 344 1.71E-21 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 Gene3D G3DSA:2.40.10.10 145 256 3.4E-39 T 14-09-2016 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 Gene3D G3DSA:2.30.42.10 257 352 3.0E-27 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 2 349 5.0E-158 T 14-09-2016 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 PANTHER PTHR22939 9 353 2.1E-159 T 14-09-2016 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 PRINTS PR00834 HtrA/DegQ protease family signature 205 222 4.5E-48 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 PRINTS PR00834 HtrA/DegQ protease family signature 183 200 4.5E-48 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 PRINTS PR00834 HtrA/DegQ protease family signature 87 99 4.5E-48 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 PRINTS PR00834 HtrA/DegQ protease family signature 294 306 4.5E-48 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 PRINTS PR00834 HtrA/DegQ protease family signature 108 128 4.5E-48 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 PRINTS PR00834 HtrA/DegQ protease family signature 148 172 4.5E-48 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 PANTHER PTHR22939:SF93 9 353 2.1E-159 T 14-09-2016 PAJ_RS19665 7f8a426fde63d88b95fce4d96d7929c2 353 SUPERFAMILY SSF50494 47 251 9.54E-59 T 14-09-2016 IPR009003 Peptidase S1, PA clan PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 Gene3D G3DSA:1.10.287.950 277 482 9.1E-55 T 14-09-2016 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 PANTHER PTHR32089:SF63 151 513 2.8E-128 T 14-09-2016 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 181 3.1E-15 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 Pfam PF00672 HAMP domain 191 258 6.5E-16 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 SUPERFAMILY SSF58104 230 511 1.23E-65 T 14-09-2016 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 SMART SM00304 210 262 1.9E-11 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 PANTHER PTHR32089 151 513 2.8E-128 T 14-09-2016 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 SMART SM00283 263 510 1.9E-75 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 438 467 8.2E-48 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 390 419 8.2E-48 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 284 313 8.2E-48 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 361 388 8.2E-48 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS17015 6f99ea05daab618e89f65ffa1960e111 544 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 316 509 2.0E-53 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 PANTHER PTHR11410 1 123 1.7E-108 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 PANTHER PTHR11410 140 272 1.7E-108 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 ProSitePatterns PS00449 ATP synthase a subunit signature. 207 216 - T 14-09-2016 IPR023011 ATPase, F0 complex, subunit A, active site PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 PRINTS PR00123 ATP synthase A subunit signature 252 267 1.2E-14 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 PRINTS PR00123 ATP synthase A subunit signature 204 226 1.2E-14 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 PRINTS PR00123 ATP synthase A subunit signature 105 121 1.2E-14 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 37 267 3.0E-41 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 Gene3D G3DSA:1.20.120.220 97 272 2.5E-57 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 PANTHER PTHR11410:SF7 140 272 1.7E-108 T 14-09-2016 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 Hamap MF_01393 ATP synthase subunit a [atpB]. 13 272 15.916 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 PANTHER PTHR11410:SF7 1 123 1.7E-108 T 14-09-2016 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 Pfam PF00119 ATP synthase A chain 47 266 3.3E-55 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PAJ_RS17625 2e8b7b5b8a1ea5c922e776289a4bc96c 272 SUPERFAMILY SSF81336 96 266 7.45E-49 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PAJ_RS00235 4ed2b68b0a9fef823a88834529d9a1f8 287 Gene3D G3DSA:3.40.192.10 4 114 1.0E-41 T 14-09-2016 PAJ_RS00235 4ed2b68b0a9fef823a88834529d9a1f8 287 SUPERFAMILY SSF53223 4 108 3.57E-33 T 14-09-2016 PAJ_RS00235 4ed2b68b0a9fef823a88834529d9a1f8 287 PANTHER PTHR21089 1 286 5.5E-91 T 14-09-2016 PAJ_RS00235 4ed2b68b0a9fef823a88834529d9a1f8 287 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 14 96 3.5E-29 T 14-09-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS00235 4ed2b68b0a9fef823a88834529d9a1f8 287 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 9 287 31.561 T 14-09-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS00235 4ed2b68b0a9fef823a88834529d9a1f8 287 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 11 285 3.5E-63 T 14-09-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS00235 4ed2b68b0a9fef823a88834529d9a1f8 287 SUPERFAMILY SSF51735 109 286 3.41E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00235 4ed2b68b0a9fef823a88834529d9a1f8 287 Gene3D G3DSA:3.40.50.720 115 286 7.9E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17405 7cf1df1993567204b20e3b4f3a2934b7 233 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 218 3.6E-23 T 14-09-2016 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 PAJ_RS17405 7cf1df1993567204b20e3b4f3a2934b7 233 Pfam PF00588 SpoU rRNA Methylase family 20 159 2.9E-37 T 14-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 PAJ_RS17405 7cf1df1993567204b20e3b4f3a2934b7 233 Gene3D G3DSA:3.40.1280.10 2 175 1.6E-49 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PAJ_RS17405 7cf1df1993567204b20e3b4f3a2934b7 233 SUPERFAMILY SSF75217 4 174 5.89E-50 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases PAJ_RS17405 7cf1df1993567204b20e3b4f3a2934b7 233 PANTHER PTHR12029 1 189 7.5E-75 T 14-09-2016 PAJ_RS17405 7cf1df1993567204b20e3b4f3a2934b7 233 PANTHER PTHR12029:SF45 1 189 7.5E-75 T 14-09-2016 PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 Pfam PF13426 PAS domain 123 225 5.9E-8 T 14-09-2016 IPR000014 PAS domain PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 SMART SM00091 111 177 4.2E-5 T 14-09-2016 IPR000014 PAS domain PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 Gene3D G3DSA:3.20.20.450 409 657 8.6E-89 T 14-09-2016 IPR001633 EAL domain PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 115 233 1.4E-13 T 14-09-2016 IPR000014 PAS domain PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 SMART SM00267 226 395 7.5E-66 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 Pfam PF00990 Diguanylate cyclase, GGDEF domain 237 389 6.9E-45 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 Gene3D G3DSA:3.30.450.20 112 218 4.5E-18 T 14-09-2016 PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 SMART SM00052 405 649 6.9E-113 T 14-09-2016 IPR001633 EAL domain PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 233 394 1.7E-34 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 PANTHER PTHR10799 53 199 5.1E-87 T 14-09-2016 PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 PANTHER PTHR10799 268 504 5.1E-87 T 14-09-2016 PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 Gene3D G3DSA:3.30.70.270 239 403 6.4E-53 T 14-09-2016 PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 SUPERFAMILY SSF55785 124 234 4.51E-15 T 14-09-2016 IPR000014 PAS domain PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 Pfam PF00563 EAL domain 412 644 4.1E-66 T 14-09-2016 IPR001633 EAL domain PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 SUPERFAMILY SSF55073 243 397 2.12E-45 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 PANTHER PTHR10799:SF710 268 504 5.1E-87 T 14-09-2016 PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 PANTHER PTHR10799:SF710 53 199 5.1E-87 T 14-09-2016 PAJ_RS07570 213fe43feb316cd049f392deb49bdef0 661 SUPERFAMILY SSF141868 412 657 1.12E-82 T 14-09-2016 IPR001633 EAL domain PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 4 613 46.874 T 14-09-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 Gene3D G3DSA:1.10.10.10 453 504 1.8E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 Pfam PF04545 Sigma-70, region 4 548 601 8.9E-19 T 14-09-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 404 417 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 Gene3D G3DSA:1.10.10.10 544 613 1.1E-32 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 Pfam PF04539 Sigma-70 region 3 459 534 3.5E-29 T 14-09-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 Gene3D G3DSA:1.10.601.10 112 449 4.9E-138 T 14-09-2016 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 376 601 3.6E-38 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 573 599 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 PANTHER PTHR30603:SF0 327 613 1.3E-253 T 14-09-2016 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 PANTHER PTHR30603:SF0 1 152 1.3E-253 T 14-09-2016 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 376 612 7.9E-121 T 14-09-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 PANTHER PTHR30603 327 613 1.3E-253 T 14-09-2016 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 PANTHER PTHR30603 1 152 1.3E-253 T 14-09-2016 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 SUPERFAMILY SSF88659 510 612 2.35E-25 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 Pfam PF03979 Sigma-70 factor, region 1.1 4 80 5.0E-31 T 14-09-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 SUPERFAMILY SSF88946 115 447 2.62E-103 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 Pfam PF04542 Sigma-70 region 2 380 449 1.7E-21 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 1.4E-12 T 14-09-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 SUPERFAMILY SSF88659 453 526 8.78E-21 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 PRINTS PR00046 Major sigma-70 factor signature 552 564 6.4E-31 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 PRINTS PR00046 Major sigma-70 factor signature 404 417 6.4E-31 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 PRINTS PR00046 Major sigma-70 factor signature 428 436 6.4E-31 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 PRINTS PR00046 Major sigma-70 factor signature 573 588 6.4E-31 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 PRINTS PR00046 Major sigma-70 factor signature 588 599 6.4E-31 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS14635 212388f221eeec99119112c5a0203d53 614 Pfam PF04546 Sigma-70, non-essential region 139 349 1.1E-75 T 14-09-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS20385 833ae2aac5ce33bcfac12a06366b5980 163 PANTHER PTHR34986 3 158 3.9E-42 T 14-09-2016 PAJ_RS20385 833ae2aac5ce33bcfac12a06366b5980 163 Gene3D G3DSA:2.60.120.370 1 156 6.6E-45 T 14-09-2016 IPR004375 YhcH/YjgK/YiaL family PAJ_RS20385 833ae2aac5ce33bcfac12a06366b5980 163 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 16 156 8.7E-36 T 14-09-2016 IPR004375 YhcH/YjgK/YiaL family PAJ_RS20385 833ae2aac5ce33bcfac12a06366b5980 163 SUPERFAMILY SSF51197 1 156 4.39E-38 T 14-09-2016 PAJ_RS20385 833ae2aac5ce33bcfac12a06366b5980 163 Pfam PF04074 Domain of unknown function (DUF386) 1 153 2.2E-41 T 14-09-2016 IPR004375 YhcH/YjgK/YiaL family PAJ_RS05585 cfd23161d6d640119d485cb15471a958 416 Gene3D G3DSA:3.40.190.10 163 267 1.3E-5 T 14-09-2016 PAJ_RS05585 cfd23161d6d640119d485cb15471a958 416 SUPERFAMILY SSF53850 42 278 1.07E-33 T 14-09-2016 PAJ_RS05585 cfd23161d6d640119d485cb15471a958 416 PANTHER PTHR30024 6 416 1.6E-145 T 14-09-2016 PAJ_RS05585 cfd23161d6d640119d485cb15471a958 416 PANTHER PTHR30024:SF7 6 416 1.6E-145 T 14-09-2016 PAJ_RS05585 cfd23161d6d640119d485cb15471a958 416 Pfam PF13379 NMT1-like family 39 290 1.2E-107 T 14-09-2016 PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 Gene3D G3DSA:3.40.50.980 33 155 2.0E-42 T 14-09-2016 PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 Gene3D G3DSA:3.40.50.980 195 228 2.0E-42 T 14-09-2016 PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 Gene3D G3DSA:3.40.50.980 229 390 6.2E-42 T 14-09-2016 PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 SUPERFAMILY SSF56801 29 565 2.49E-155 T 14-09-2016 PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 Pfam PF13193 AMP-binding enzyme C-terminal domain 480 554 2.1E-21 T 14-09-2016 IPR025110 AMP-binding enzyme C-terminal domain PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 PANTHER PTHR24096 19 164 1.9E-180 T 14-09-2016 PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 PANTHER PTHR24096 187 563 1.9E-180 T 14-09-2016 PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 Gene3D G3DSA:2.30.38.10 391 462 2.4E-29 T 14-09-2016 PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 Gene3D G3DSA:3.30.300.30 466 563 2.3E-31 T 14-09-2016 PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 Pfam PF00501 AMP-binding enzyme 40 471 2.1E-111 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PAJ_RS08045 1c835fef088aff302c624100c36e52cc 569 ProSitePatterns PS00455 Putative AMP-binding domain signature. 222 233 - T 14-09-2016 IPR020845 AMP-binding, conserved site PAJ_RS17720 ee91b416e3cad52b5af494e9466f7711 330 Gene3D G3DSA:3.40.50.2300 143 317 4.5E-48 T 14-09-2016 PAJ_RS17720 ee91b416e3cad52b5af494e9466f7711 330 Pfam PF13407 Periplasmic binding protein domain 38 285 8.5E-63 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS17720 ee91b416e3cad52b5af494e9466f7711 330 PANTHER PTHR30036:SF1 1 330 2.3E-168 T 14-09-2016 PAJ_RS17720 ee91b416e3cad52b5af494e9466f7711 330 PANTHER PTHR30036 1 330 2.3E-168 T 14-09-2016 PAJ_RS17720 ee91b416e3cad52b5af494e9466f7711 330 TIGRFAM TIGR02634 xylF: D-xylose ABC transporter, D-xylose-binding protein 28 330 3.1E-164 T 14-09-2016 IPR013456 D-xylose ABC transporter, substrate-binding protein GO:0015753|GO:0048029 PAJ_RS17720 ee91b416e3cad52b5af494e9466f7711 330 SUPERFAMILY SSF53822 24 317 2.04E-73 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS17720 ee91b416e3cad52b5af494e9466f7711 330 Gene3D G3DSA:3.40.50.2300 25 142 6.7E-36 T 14-09-2016 PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 PANTHER PTHR11751:SF382 15 73 8.7E-34 T 14-09-2016 PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 6.8E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 6.8E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 SUPERFAMILY SSF46785 12 75 1.53E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 SUPERFAMILY SSF48008 98 233 2.88E-26 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 PANTHER PTHR11751:SF382 93 116 8.7E-34 T 14-09-2016 PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 69 1.2E-17 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 PANTHER PTHR11751 93 116 8.7E-34 T 14-09-2016 PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 Pfam PF07729 FCD domain 100 226 4.9E-23 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 Gene3D G3DSA:1.20.120.530 99 235 7.7E-25 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 SMART SM00345 12 71 1.1E-16 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 PANTHER PTHR11751 15 73 8.7E-34 T 14-09-2016 PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 Gene3D G3DSA:1.10.10.10 13 75 1.0E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01355 4ed17ea334948502d75931974847df5a 261 SMART SM00895 100 228 1.4E-18 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 Gene3D G3DSA:2.30.42.10 393 457 1.3E-15 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 SMART SM00228 379 452 1.3E-7 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 SMART SM00228 272 354 1.8E-14 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 PANTHER PTHR22939:SF101 79 460 9.2E-198 T 14-09-2016 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 Pfam PF13365 Trypsin-like peptidase domain 97 233 1.3E-30 T 14-09-2016 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 PRINTS PR00834 HtrA/DegQ protease family signature 312 324 2.0E-58 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 PRINTS PR00834 HtrA/DegQ protease family signature 204 221 2.0E-58 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 PRINTS PR00834 HtrA/DegQ protease family signature 169 193 2.0E-58 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 PRINTS PR00834 HtrA/DegQ protease family signature 107 119 2.0E-58 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 PRINTS PR00834 HtrA/DegQ protease family signature 128 148 2.0E-58 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 PRINTS PR00834 HtrA/DegQ protease family signature 226 243 2.0E-58 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 PANTHER PTHR22939 1 61 9.2E-198 T 14-09-2016 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 SUPERFAMILY SSF50156 230 355 6.57E-25 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 Gene3D G3DSA:2.40.10.10 38 160 2.7E-35 T 14-09-2016 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 Gene3D G3DSA:2.30.42.10 274 368 7.9E-30 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 40 458 6.4E-160 T 14-09-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 SUPERFAMILY SSF50494 38 268 3.94E-66 T 14-09-2016 IPR009003 Peptidase S1, PA clan PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 PANTHER PTHR22939 79 460 9.2E-198 T 14-09-2016 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 PANTHER PTHR22939:SF101 1 61 9.2E-198 T 14-09-2016 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 Gene3D G3DSA:2.40.10.10 161 273 7.1E-45 T 14-09-2016 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 267 350 1.2E-16 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 381 447 4.5E-11 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS19670 1053ddfef76b8f7af148d021fa51a59a 460 SUPERFAMILY SSF50156 392 456 3.02E-13 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 ProSitePatterns PS00622 LuxR-type HTH domain signature. 194 221 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 SUPERFAMILY SSF46894 172 240 9.86E-17 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 PANTHER PTHR26402:SF432 43 240 4.5E-28 T 14-09-2016 PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 Pfam PF00196 Bacterial regulatory proteins, luxR family 180 234 1.9E-20 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 SMART SM00421 177 234 4.4E-18 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 Gene3D G3DSA:1.10.10.10 183 240 8.5E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 Gene3D G3DSA:3.30.450.80 8 182 8.2E-36 T 14-09-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 PANTHER PTHR26402 43 240 4.5E-28 T 14-09-2016 PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 Pfam PF03472 Autoinducer binding domain 23 155 5.1E-29 T 14-09-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 SUPERFAMILY SSF75516 9 170 2.35E-34 T 14-09-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 194 4.3E-9 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 210 222 4.3E-9 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03960 44ed0194fa3bfc4784dd1effe03d3de7 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 194 210 4.3E-9 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS10705 715d0b6ac1c375c38acca4032b608fbb 364 SMART SM00829 10 357 6.9E-5 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS10705 715d0b6ac1c375c38acca4032b608fbb 364 PANTHER PTHR11695 13 346 1.8E-89 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS10705 715d0b6ac1c375c38acca4032b608fbb 364 SUPERFAMILY SSF51735 143 326 4.9E-23 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10705 715d0b6ac1c375c38acca4032b608fbb 364 Gene3D G3DSA:3.40.50.720 175 301 9.0E-16 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10705 715d0b6ac1c375c38acca4032b608fbb 364 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 137 8.5E-7 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS10705 715d0b6ac1c375c38acca4032b608fbb 364 Pfam PF00107 Zinc-binding dehydrogenase 183 317 5.5E-8 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS10705 715d0b6ac1c375c38acca4032b608fbb 364 SUPERFAMILY SSF50129 1 183 8.18E-27 T 14-09-2016 IPR011032 GroES-like PAJ_RS10705 715d0b6ac1c375c38acca4032b608fbb 364 Gene3D G3DSA:3.90.180.10 119 174 4.9E-22 T 14-09-2016 IPR011032 GroES-like PAJ_RS10705 715d0b6ac1c375c38acca4032b608fbb 364 Gene3D G3DSA:3.90.180.10 1 87 4.9E-22 T 14-09-2016 IPR011032 GroES-like PAJ_RS10705 715d0b6ac1c375c38acca4032b608fbb 364 PANTHER PTHR11695:SF607 13 346 1.8E-89 T 14-09-2016 PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 7.8E-14 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 7.8E-14 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 7.8E-14 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 Pfam PF00366 Ribosomal protein S17 10 76 2.2E-34 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 PANTHER PTHR10744 6 82 1.9E-44 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 76 6.0E-35 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 5.0E-38 T 14-09-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 14-09-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 SUPERFAMILY SSF50249 5 82 1.5E-33 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 Gene3D G3DSA:2.40.50.140 6 82 9.8E-37 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15810 a3d266bc0ac51cde3e87b931e24c611e 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 3 81 25.935 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS13455 1badf6a7e7b3a806e2d886bb19fdb41b 243 PIRSF PIRSF015601 2 242 2.3E-50 T 14-09-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS13455 1badf6a7e7b3a806e2d886bb19fdb41b 243 Gene3D G3DSA:2.40.240.20 1 72 3.0E-25 T 14-09-2016 PAJ_RS13455 1badf6a7e7b3a806e2d886bb19fdb41b 243 Gene3D G3DSA:3.40.1280.10 75 242 1.0E-58 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PAJ_RS13455 1badf6a7e7b3a806e2d886bb19fdb41b 243 SUPERFAMILY SSF75217 75 242 7.33E-51 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases PAJ_RS13455 1badf6a7e7b3a806e2d886bb19fdb41b 243 PANTHER PTHR30027:SF3 1 243 3.9E-99 T 14-09-2016 PAJ_RS13455 1badf6a7e7b3a806e2d886bb19fdb41b 243 SUPERFAMILY SSF88697 2 70 7.7E-17 T 14-09-2016 IPR015947 PUA-like domain PAJ_RS13455 1badf6a7e7b3a806e2d886bb19fdb41b 243 Pfam PF04452 RNA methyltransferase 19 236 6.3E-72 T 14-09-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS13455 1badf6a7e7b3a806e2d886bb19fdb41b 243 PANTHER PTHR30027 1 243 3.9E-99 T 14-09-2016 PAJ_RS13455 1badf6a7e7b3a806e2d886bb19fdb41b 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 1.0E-84 T 14-09-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SUPERFAMILY SSF50249 189 277 5.59E-27 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SUPERFAMILY SSF50249 1 112 3.34E-19 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Pfam PF00575 S1 RNA binding domain 449 520 6.2E-15 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Pfam PF00575 S1 RNA binding domain 275 347 2.7E-20 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Pfam PF00575 S1 RNA binding domain 361 434 4.0E-22 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Pfam PF00575 S1 RNA binding domain 103 171 4.1E-10 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Pfam PF00575 S1 RNA binding domain 20 78 8.5E-7 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Pfam PF00575 S1 RNA binding domain 190 260 1.8E-21 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PANTHER PTHR10724:SF6 1 514 1.2E-280 T 14-09-2016 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 2.4E-99 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 2.4E-99 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 2.4E-99 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 2.4E-99 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 2.4E-99 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 2.4E-99 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 2.4E-99 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 2.4E-99 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 2.4E-99 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SUPERFAMILY SSF50249 429 533 9.24E-22 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SUPERFAMILY SSF50249 103 185 2.24E-14 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Gene3D G3DSA:2.40.50.140 21 101 6.2E-11 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Gene3D G3DSA:2.40.50.140 192 274 9.8E-31 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 3.8E-238 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PIRSF PIRSF002111 1 535 2.2E-221 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 PANTHER PTHR10724 1 514 1.2E-280 T 14-09-2016 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Gene3D G3DSA:2.40.50.140 358 443 3.0E-25 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Gene3D G3DSA:2.40.50.140 275 357 4.8E-30 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SMART SM00316 19 87 4.5E-5 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SMART SM00316 449 520 2.7E-20 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SMART SM00316 362 434 1.4E-21 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SMART SM00316 190 260 1.4E-27 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SMART SM00316 275 347 2.2E-27 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SMART SM00316 103 171 5.2E-9 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SUPERFAMILY SSF50249 362 443 1.64E-20 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 SUPERFAMILY SSF50249 255 370 1.17E-30 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Gene3D G3DSA:2.40.50.140 448 521 2.2E-19 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03635 2a34dc04f453bbbb3df11c76ab8045ea 557 Gene3D G3DSA:2.40.50.140 102 172 2.0E-15 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS14185 67c5be5c88b4b94f46e51d210f7d89ad 349 PANTHER PTHR14226:SF25 1 309 3.7E-123 T 14-09-2016 PAJ_RS14185 67c5be5c88b4b94f46e51d210f7d89ad 349 Pfam PF01734 Patatin-like phospholipase 27 195 1.6E-17 T 14-09-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 PAJ_RS14185 67c5be5c88b4b94f46e51d210f7d89ad 349 Gene3D G3DSA:3.40.1090.10 23 195 1.0E-4 T 14-09-2016 PAJ_RS14185 67c5be5c88b4b94f46e51d210f7d89ad 349 PANTHER PTHR14226 1 309 3.7E-123 T 14-09-2016 PAJ_RS14185 67c5be5c88b4b94f46e51d210f7d89ad 349 SUPERFAMILY SSF52151 23 269 1.12E-40 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PAJ_RS01085 4ec3e97ed5a94447b00c43880b562393 340 Gene3D G3DSA:3.40.50.10470 147 333 1.2E-65 T 14-09-2016 PAJ_RS01085 4ec3e97ed5a94447b00c43880b562393 340 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 5 340 36.423 T 14-09-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 PAJ_RS01085 4ec3e97ed5a94447b00c43880b562393 340 SUPERFAMILY SSF100950 9 333 2.79E-108 T 14-09-2016 PAJ_RS01085 4ec3e97ed5a94447b00c43880b562393 340 PANTHER PTHR10233 8 332 1.7E-140 T 14-09-2016 PAJ_RS01085 4ec3e97ed5a94447b00c43880b562393 340 Gene3D G3DSA:1.20.120.420 7 146 8.9E-39 T 14-09-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 PAJ_RS01085 4ec3e97ed5a94447b00c43880b562393 340 PANTHER PTHR10233:SF6 8 332 1.7E-140 T 14-09-2016 PAJ_RS01085 4ec3e97ed5a94447b00c43880b562393 340 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 35 329 4.7E-95 T 14-09-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 PAJ_RS01085 4ec3e97ed5a94447b00c43880b562393 340 Pfam PF01008 Initiation factor 2 subunit family 48 329 1.8E-70 T 14-09-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 PAJ_RS01085 4ec3e97ed5a94447b00c43880b562393 340 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 8 328 4.5E-125 T 14-09-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 572 701 1.7E-46 T 14-09-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 4 67 1.2E-10 T 14-09-2016 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 PANTHER PTHR11751 106 576 4.9E-208 T 14-09-2016 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 346 360 - T 14-09-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 Gene3D G3DSA:3.90.100.10 590 714 9.3E-37 T 14-09-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 PANTHER PTHR11751:SF425 106 576 4.9E-208 T 14-09-2016 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 Gene3D G3DSA:3.40.640.10 105 415 1.8E-114 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 105 546 8.0E-193 T 14-09-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 SUPERFAMILY SSF53383 105 563 8.84E-120 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 Gene3D G3DSA:3.90.1150.10 417 589 3.7E-71 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 PIRSF PIRSF009393 1 716 6.4E-283 T 14-09-2016 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 SUPERFAMILY SSF55904 569 712 1.57E-42 T 14-09-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 SUPERFAMILY SSF52172 1 104 1.49E-19 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS13570 6d7c06f4313c33c03a78539e7c73eadd 716 Gene3D G3DSA:3.40.50.220 1 104 2.2E-25 T 14-09-2016 IPR027464 Ornithine decarboxylase, N-terminal domain KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 Gene3D G3DSA:3.90.550.10 21 301 1.1E-76 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 Gene3D G3DSA:3.90.550.10 344 386 1.1E-76 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 423 51.091 T 14-09-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 PANTHER PTHR22572 21 398 3.6E-173 T 14-09-2016 PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 211 221 - T 14-09-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 Pfam PF00483 Nucleotidyl transferase 22 291 5.6E-67 T 14-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 14-09-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 SUPERFAMILY SSF51161 313 406 7.85E-17 T 14-09-2016 IPR011004 Trimeric LpxA-like PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 SUPERFAMILY SSF53448 344 357 1.97E-75 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 SUPERFAMILY SSF53448 17 294 1.97E-75 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 14-09-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 1.6E-151 T 14-09-2016 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16235 c6c86af2e1aac18d637ee99b3b2cfd8e 430 PANTHER PTHR22572:SF10 21 398 3.6E-173 T 14-09-2016 PAJ_RS00930 dffc3769c62e97276e72b2c240938f2b 319 PANTHER PTHR10587 21 314 9.6E-150 T 14-09-2016 PAJ_RS00930 dffc3769c62e97276e72b2c240938f2b 319 Gene3D G3DSA:3.20.20.370 14 317 5.1E-102 T 14-09-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PAJ_RS00930 dffc3769c62e97276e72b2c240938f2b 319 Pfam PF01522 Polysaccharide deacetylase 86 192 7.3E-10 T 14-09-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PAJ_RS00930 dffc3769c62e97276e72b2c240938f2b 319 PANTHER PTHR10587:SF72 21 314 9.6E-150 T 14-09-2016 PAJ_RS00930 dffc3769c62e97276e72b2c240938f2b 319 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 16 316 1.2E-157 T 14-09-2016 IPR017625 Putative urate catabolism protein PAJ_RS00930 dffc3769c62e97276e72b2c240938f2b 319 SUPERFAMILY SSF88713 15 316 1.64E-87 T 14-09-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PAJ_RS20550 f99a6564fd570277fe6ff2b39e0fa7c4 446 Pfam PF00202 Aminotransferase class-III 48 441 5.6E-80 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS20550 f99a6564fd570277fe6ff2b39e0fa7c4 446 SUPERFAMILY SSF53383 40 444 4.73E-105 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS20550 f99a6564fd570277fe6ff2b39e0fa7c4 446 PANTHER PTHR11986:SF23 5 445 7.9E-147 T 14-09-2016 PAJ_RS20550 f99a6564fd570277fe6ff2b39e0fa7c4 446 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 254 292 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS20550 f99a6564fd570277fe6ff2b39e0fa7c4 446 Gene3D G3DSA:3.40.640.10 80 326 7.3E-66 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS20550 f99a6564fd570277fe6ff2b39e0fa7c4 446 PANTHER PTHR11986 5 445 7.9E-147 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS20550 f99a6564fd570277fe6ff2b39e0fa7c4 446 Gene3D G3DSA:3.90.1150.10 327 444 3.0E-37 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 Pfam PF04545 Sigma-70, region 4 262 315 1.8E-15 T 14-09-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 Pfam PF00140 Sigma-70 factor, region 1.2 56 87 3.1E-10 T 14-09-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 PANTHER PTHR30603 14 329 2.4E-204 T 14-09-2016 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 91 317 4.0E-35 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 SUPERFAMILY SSF88659 167 241 8.72E-15 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 Gene3D G3DSA:1.10.10.10 167 216 2.3E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 Pfam PF04539 Sigma-70 region 3 174 248 8.9E-21 T 14-09-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 6 328 39.736 T 14-09-2016 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 Gene3D G3DSA:1.10.10.10 257 322 3.6E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 Pfam PF04542 Sigma-70 region 2 94 163 2.9E-21 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 SUPERFAMILY SSF88659 225 322 1.03E-23 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 287 313 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 SUPERFAMILY SSF88946 56 164 2.75E-45 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 118 131 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 PANTHER PTHR30603:SF15 14 329 2.4E-204 T 14-09-2016 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 48 328 6.4E-144 T 14-09-2016 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 Gene3D G3DSA:1.10.601.10 33 163 2.7E-55 T 14-09-2016 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 PRINTS PR00046 Major sigma-70 factor signature 266 278 2.5E-27 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 PRINTS PR00046 Major sigma-70 factor signature 287 302 2.5E-27 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 PRINTS PR00046 Major sigma-70 factor signature 118 131 2.5E-27 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 PRINTS PR00046 Major sigma-70 factor signature 302 313 2.5E-27 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12815 060b65a60c9c6a3de57d0cfc7dc5a5fd 330 PRINTS PR00046 Major sigma-70 factor signature 142 150 2.5E-27 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 SUPERFAMILY SSF142984 250 332 1.31E-19 T 14-09-2016 PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 56 228 1.1E-50 T 14-09-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 SUPERFAMILY SSF140490 335 427 8.5E-31 T 14-09-2016 PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 15 425 4.1E-204 T 14-09-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 SMART SM00928 338 383 5.3E-20 T 14-09-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 341 423 1.9E-26 T 14-09-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 351 362 - T 14-09-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 SUPERFAMILY SSF142019 14 248 1.44E-85 T 14-09-2016 PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 Pfam PF10531 SLBB domain 255 297 1.5E-6 T 14-09-2016 IPR019554 Soluble ligand binding domain PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 176 191 - T 14-09-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 PAJ_RS10610 60b143fd85f82c704ef4595bad384c2b 448 PANTHER PTHR11780 7 426 2.9E-220 T 14-09-2016 PAJ_RS03880 b79a4b35ab80425ccb0f55c1376f7e07 396 SUPERFAMILY SSF88697 4 72 3.08E-17 T 14-09-2016 IPR015947 PUA-like domain PAJ_RS03880 b79a4b35ab80425ccb0f55c1376f7e07 396 PANTHER PTHR11061:SF12 5 396 5.9E-123 T 14-09-2016 PAJ_RS03880 b79a4b35ab80425ccb0f55c1376f7e07 396 Gene3D G3DSA:2.30.130.10 4 72 5.0E-27 T 14-09-2016 IPR015947 PUA-like domain PAJ_RS03880 b79a4b35ab80425ccb0f55c1376f7e07 396 SMART SM00359 3 88 1.5E-15 T 14-09-2016 IPR002478 PUA domain GO:0003723 PAJ_RS03880 b79a4b35ab80425ccb0f55c1376f7e07 396 PANTHER PTHR11061 5 396 5.9E-123 T 14-09-2016 PAJ_RS03880 b79a4b35ab80425ccb0f55c1376f7e07 396 Gene3D G3DSA:3.40.50.150 185 395 1.2E-60 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03880 b79a4b35ab80425ccb0f55c1376f7e07 396 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 181 371 1.3E-28 T 14-09-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 PAJ_RS03880 b79a4b35ab80425ccb0f55c1376f7e07 396 SUPERFAMILY SSF53335 79 392 8.59E-72 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03880 b79a4b35ab80425ccb0f55c1376f7e07 396 Gene3D G3DSA:3.30.750.80 74 180 8.4E-35 T 14-09-2016 PAJ_RS03880 b79a4b35ab80425ccb0f55c1376f7e07 396 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 396 68.418 T 14-09-2016 IPR023542 rRNA large subunit methyltransferase I GO:0008649 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS10805 2849f70b9866c9e9758e644e4eb1c8f4 267 PANTHER PTHR11142 1 265 1.3E-99 T 14-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS10805 2849f70b9866c9e9758e644e4eb1c8f4 267 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 8 244 3.5E-78 T 14-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS10805 2849f70b9866c9e9758e644e4eb1c8f4 267 PIRSF PIRSF001430 6 260 3.1E-76 T 14-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS10805 2849f70b9866c9e9758e644e4eb1c8f4 267 SUPERFAMILY SSF55120 7 260 1.73E-91 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS10805 2849f70b9866c9e9758e644e4eb1c8f4 267 Gene3D G3DSA:3.30.70.580 6 110 6.0E-39 T 14-09-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS10805 2849f70b9866c9e9758e644e4eb1c8f4 267 Gene3D G3DSA:3.30.70.660 112 247 7.3E-46 T 14-09-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS10805 2849f70b9866c9e9758e644e4eb1c8f4 267 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 7 249 35.759 T 14-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS10805 2849f70b9866c9e9758e644e4eb1c8f4 267 Pfam PF01416 tRNA pseudouridine synthase 14 109 8.9E-10 T 14-09-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS10805 2849f70b9866c9e9758e644e4eb1c8f4 267 Pfam PF01416 tRNA pseudouridine synthase 150 250 3.3E-27 T 14-09-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 Gene3D G3DSA:1.10.1900.20 55 117 2.5E-31 T 14-09-2016 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 2.4E-42 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 2.4E-42 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 2.4E-42 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 SUPERFAMILY SSF74731 3 117 1.44E-50 T 14-09-2016 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 Pfam PF00453 Ribosomal protein L20 3 109 2.1E-49 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.126 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.6E-53 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 PANTHER PTHR10986 2 117 1.5E-67 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 4.0E-14 T 14-09-2016 PAJ_RS05775 00b08e0f2f8ed3b0166ea58d1c71136d 118 PANTHER PTHR10986:SF12 2 117 1.5E-67 T 14-09-2016 PAJ_RS05215 31ecb833662c79b240ab675a7177b736 861 SUPERFAMILY SSF141729 40 162 1.05E-34 T 14-09-2016 PAJ_RS05215 31ecb833662c79b240ab675a7177b736 861 PANTHER PTHR30451:SF2 6 861 0.0 T 14-09-2016 PAJ_RS05215 31ecb833662c79b240ab675a7177b736 861 Pfam PF13953 PapC C-terminal domain 783 845 2.7E-25 T 14-09-2016 IPR025949 PapC-like, C-terminal domain PAJ_RS05215 31ecb833662c79b240ab675a7177b736 861 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 313 323 - T 14-09-2016 IPR018030 Fimbrial membrane usher, conserved site PAJ_RS05215 31ecb833662c79b240ab675a7177b736 861 Pfam PF13954 PapC N-terminal domain 42 184 5.6E-47 T 14-09-2016 IPR025885 PapC, N-terminal domain GO:0005515 PAJ_RS05215 31ecb833662c79b240ab675a7177b736 861 PANTHER PTHR30451 6 861 0.0 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS05215 31ecb833662c79b240ab675a7177b736 861 Pfam PF00577 Outer membrane usher protein 199 774 2.2E-189 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS08595 f6335927767269e18e3c7010d4d1ce43 315 Gene3D G3DSA:3.40.190.10 127 233 5.8E-33 T 14-09-2016 PAJ_RS08595 f6335927767269e18e3c7010d4d1ce43 315 PANTHER PTHR30024 1 310 3.7E-109 T 14-09-2016 PAJ_RS08595 f6335927767269e18e3c7010d4d1ce43 315 PANTHER PTHR30024:SF11 1 310 3.7E-109 T 14-09-2016 PAJ_RS08595 f6335927767269e18e3c7010d4d1ce43 315 Pfam PF09084 NMT1/THI5 like 53 249 3.1E-18 T 14-09-2016 IPR015168 SsuA/THI5-like PAJ_RS08595 f6335927767269e18e3c7010d4d1ce43 315 SUPERFAMILY SSF53850 26 256 5.44E-52 T 14-09-2016 PAJ_RS08595 f6335927767269e18e3c7010d4d1ce43 315 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 30 310 1.1E-70 T 14-09-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 PAJ_RS08595 f6335927767269e18e3c7010d4d1ce43 315 SMART SM00062 29 249 9.6E-23 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS08595 f6335927767269e18e3c7010d4d1ce43 315 Gene3D G3DSA:3.40.190.10 54 126 3.3E-6 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 SUPERFAMILY SSF82866 827 1019 4.58E-42 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 SUPERFAMILY SSF82714 720 803 5.62E-19 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 SUPERFAMILY SSF82693 565 665 5.75E-24 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 Gene3D G3DSA:3.30.2090.10 181 275 3.1E-23 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 Gene3D G3DSA:3.30.2090.10 718 806 6.4E-21 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1029 0.0 T 14-09-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PANTHER PTHR32063:SF13 1 1023 0.0 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 SUPERFAMILY SSF82714 183 272 2.22E-20 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 Gene3D G3DSA:3.30.70.1430 567 666 1.8E-26 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 Pfam PF00873 AcrB/AcrD/AcrF family 1 1020 0.0 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 Gene3D G3DSA:3.30.70.1430 38 140 4.9E-29 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 SUPERFAMILY SSF82693 135 182 2.07E-23 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 SUPERFAMILY SSF82693 274 330 2.07E-23 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 SUPERFAMILY SSF82693 38 128 3.92E-23 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 SUPERFAMILY SSF82866 296 497 4.05E-46 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PANTHER PTHR32063 1 1023 0.0 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 Gene3D G3DSA:1.10.3850.10 811 1023 4.4E-55 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 Gene3D G3DSA:1.10.3850.10 279 498 1.5E-55 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 SUPERFAMILY SSF82693 668 717 8.63E-25 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 SUPERFAMILY SSF82693 804 852 8.63E-25 T 14-09-2016 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 8.6E-99 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 8.6E-99 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 8.6E-99 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 8.6E-99 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 8.6E-99 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 8.6E-99 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 8.6E-99 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 8.6E-99 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS12375 03151d7e1ffdef4e2cfd60267b8a329a 1033 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 8.6E-99 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS18105 0046b48c3f739146cdc1c44cc5c8cccf 472 Hamap MF_00544 Tryptophanase [tnaA]. 4 471 99.255 T 14-09-2016 IPR013440 Tryptophanase GO:0006568|GO:0009034 KEGG: 00380+4.1.99.1|UniPathway: UPA00332 PAJ_RS18105 0046b48c3f739146cdc1c44cc5c8cccf 472 ProSitePatterns PS00853 Beta-eliminating lyases pyridoxal-phosphate attachment site. 260 278 - T 14-09-2016 IPR018176 Tryptophanase, conserved site KEGG: 00380+4.1.99.1|UniPathway: UPA00332 PAJ_RS18105 0046b48c3f739146cdc1c44cc5c8cccf 472 Pfam PF01212 Beta-eliminating lyase 49 437 5.4E-92 T 14-09-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 PAJ_RS18105 0046b48c3f739146cdc1c44cc5c8cccf 472 TIGRFAM TIGR02617 tnaA_trp_ase: tryptophanase 5 471 1.7E-291 T 14-09-2016 IPR013440 Tryptophanase GO:0006568|GO:0009034 KEGG: 00380+4.1.99.1|UniPathway: UPA00332 PAJ_RS18105 0046b48c3f739146cdc1c44cc5c8cccf 472 SUPERFAMILY SSF53383 7 471 7.52E-126 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS18105 0046b48c3f739146cdc1c44cc5c8cccf 472 Gene3D G3DSA:3.90.1150.10 321 470 4.4E-63 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS18105 0046b48c3f739146cdc1c44cc5c8cccf 472 PIRSF PIRSF001386 3 472 5.2E-202 T 14-09-2016 IPR011166 Beta-eliminating lyase family GO:0009072|GO:0016830 KEGG: 00380+4.1.99.1|UniPathway: UPA00332 PAJ_RS18105 0046b48c3f739146cdc1c44cc5c8cccf 472 PANTHER PTHR32325 1 471 1.9E-186 T 14-09-2016 PAJ_RS18105 0046b48c3f739146cdc1c44cc5c8cccf 472 Gene3D G3DSA:3.40.640.10 62 320 1.9E-85 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 152 169 - T 14-09-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 130 266 5.5E-45 T 14-09-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 PANTHER PTHR20836:SF0 1 271 1.1E-99 T 14-09-2016 PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 4 127 2.9E-41 T 14-09-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 SUPERFAMILY SSF55347 129 238 1.33E-38 T 14-09-2016 PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 PIRSF PIRSF000161 2 270 1.2E-92 T 14-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 Gene3D G3DSA:3.40.50.720 1 165 2.5E-61 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 SUPERFAMILY SSF51735 238 269 4.35E-51 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 SUPERFAMILY SSF51735 3 128 4.35E-51 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 PANTHER PTHR20836 1 271 1.1E-99 T 14-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 4 267 8.6E-107 T 14-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS00090 e71707d3581ead2f01ffa478a78f8171 271 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 4 267 35.487 T 14-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS00460 59e775464323c07df306b095d8d58bc6 314 PANTHER PTHR30537 1 314 4.6E-112 T 14-09-2016 PAJ_RS00460 59e775464323c07df306b095d8d58bc6 314 Gene3D G3DSA:3.40.190.10 96 182 1.6E-17 T 14-09-2016 PAJ_RS00460 59e775464323c07df306b095d8d58bc6 314 SUPERFAMILY SSF46785 7 91 1.19E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00460 59e775464323c07df306b095d8d58bc6 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 3.3E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00460 59e775464323c07df306b095d8d58bc6 314 Gene3D G3DSA:3.40.190.10 183 263 6.9E-11 T 14-09-2016 PAJ_RS00460 59e775464323c07df306b095d8d58bc6 314 PANTHER PTHR30537:SF28 1 314 4.6E-112 T 14-09-2016 PAJ_RS00460 59e775464323c07df306b095d8d58bc6 314 Gene3D G3DSA:1.10.10.10 7 89 2.1E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00460 59e775464323c07df306b095d8d58bc6 314 SUPERFAMILY SSF53850 93 295 1.45E-41 T 14-09-2016 PAJ_RS00460 59e775464323c07df306b095d8d58bc6 314 Pfam PF03466 LysR substrate binding domain 92 295 7.5E-39 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 Pfam PF00490 Delta-aminolevulinic acid dehydratase 8 321 5.9E-134 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 Gene3D G3DSA:3.20.20.70 5 321 4.8E-137 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 242 254 - T 14-09-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 PANTHER PTHR11458 1 325 1.5E-242 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 PIRSF PIRSF001415 1 324 9.1E-144 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 SUPERFAMILY SSF51569 6 321 2.93E-128 T 14-09-2016 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 191 210 7.8E-55 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 242 258 7.8E-55 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 297 316 7.8E-55 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 123 137 7.8E-55 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 153 172 7.8E-55 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 267 282 7.8E-55 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 PANTHER PTHR11458:SF1 1 325 1.5E-242 T 14-09-2016 PAJ_RS16485 e233daa34eb019e2df01dbfca50058b9 325 SMART SM01004 5 323 1.6E-202 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS16180 e2143a7d2d204dae31fba439c4591168 226 Gene3D G3DSA:3.40.50.2020 50 225 3.9E-28 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS16180 e2143a7d2d204dae31fba439c4591168 226 PANTHER PTHR11907 1 226 1.9E-63 T 14-09-2016 PAJ_RS16180 e2143a7d2d204dae31fba439c4591168 226 SUPERFAMILY SSF53271 45 224 9.57E-34 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS16180 e2143a7d2d204dae31fba439c4591168 226 Pfam PF00156 Phosphoribosyl transferase domain 137 223 1.1E-9 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PAJ_RS16180 e2143a7d2d204dae31fba439c4591168 226 PANTHER PTHR11907:SF9 1 226 1.9E-63 T 14-09-2016 PAJ_RS17125 7fdf5f4903004b0553f3e7ef8dd61785 329 Pfam PF13531 Bacterial extracellular solute-binding protein 31 280 8.0E-45 T 14-09-2016 PAJ_RS17125 7fdf5f4903004b0553f3e7ef8dd61785 329 SUPERFAMILY SSF53850 21 327 8.57E-92 T 14-09-2016 PAJ_RS17125 7fdf5f4903004b0553f3e7ef8dd61785 329 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 12 326 4.0E-175 T 14-09-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 PAJ_RS17125 7fdf5f4903004b0553f3e7ef8dd61785 329 PANTHER PTHR30368:SF2 4 329 4.4E-188 T 14-09-2016 PAJ_RS17125 7fdf5f4903004b0553f3e7ef8dd61785 329 Gene3D G3DSA:3.40.190.10 173 294 4.4E-30 T 14-09-2016 PAJ_RS17125 7fdf5f4903004b0553f3e7ef8dd61785 329 Gene3D G3DSA:3.40.190.10 21 162 1.1E-49 T 14-09-2016 PAJ_RS17125 7fdf5f4903004b0553f3e7ef8dd61785 329 PANTHER PTHR30368 4 329 4.4E-188 T 14-09-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 PAJ_RS17125 7fdf5f4903004b0553f3e7ef8dd61785 329 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 145 153 - T 14-09-2016 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 PAJ_RS17125 7fdf5f4903004b0553f3e7ef8dd61785 329 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 48 60 - T 14-09-2016 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 PAJ_RS16055 0bc247338395647da3ccda8ffef37f91 227 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 1.3E-89 T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PAJ_RS16055 0bc247338395647da3ccda8ffef37f91 227 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PAJ_RS16055 0bc247338395647da3ccda8ffef37f91 227 PIRSF PIRSF001461 1 226 5.9E-105 T 14-09-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PAJ_RS16055 0bc247338395647da3ccda8ffef37f91 227 SUPERFAMILY SSF51366 3 218 2.57E-75 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PAJ_RS16055 0bc247338395647da3ccda8ffef37f91 227 PANTHER PTHR11749 2 223 1.3E-141 T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PAJ_RS16055 0bc247338395647da3ccda8ffef37f91 227 PANTHER PTHR11749:SF7 2 223 1.3E-141 T 14-09-2016 PAJ_RS16055 0bc247338395647da3ccda8ffef37f91 227 Gene3D G3DSA:3.20.20.70 1 223 6.1E-93 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS16055 0bc247338395647da3ccda8ffef37f91 227 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PAJ_RS16055 0bc247338395647da3ccda8ffef37f91 227 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 216 3.5E-95 T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 3 526 52.706 T 14-09-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 Pfam PF16658 Class II release factor RF3, C-terminal domain 386 513 1.4E-46 T 14-09-2016 IPR032090 Peptide chain release factor 3, C-terminal PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 162 6.6E-18 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 PANTHER PTHR23115:SF69 7 183 7.4E-255 T 14-09-2016 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 PANTHER PTHR23115:SF69 250 471 7.4E-255 T 14-09-2016 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 SUPERFAMILY SSF50447 261 392 8.39E-29 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 Gene3D G3DSA:2.40.30.10 291 393 1.5E-25 T 14-09-2016 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 PANTHER PTHR23115 250 471 7.4E-255 T 14-09-2016 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 Pfam PF00009 Elongation factor Tu GTP binding domain 12 276 4.7E-46 T 14-09-2016 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 PRINTS PR00315 GTP-binding elongation factor signature 136 145 6.6E-11 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 PRINTS PR00315 GTP-binding elongation factor signature 100 111 6.6E-11 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 PRINTS PR00315 GTP-binding elongation factor signature 84 94 6.6E-11 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 PRINTS PR00315 GTP-binding elongation factor signature 64 72 6.6E-11 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 PRINTS PR00315 GTP-binding elongation factor signature 14 27 6.6E-11 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 PANTHER PTHR23115 7 183 7.4E-255 T 14-09-2016 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 57 72 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 SUPERFAMILY SSF52540 9 276 3.42E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 Gene3D G3DSA:3.30.70.870 394 463 1.8E-13 T 14-09-2016 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 Gene3D G3DSA:3.40.50.300 8 282 8.9E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 Pfam PF03144 Elongation factor Tu domain 2 313 379 1.9E-11 T 14-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 4 528 0.0 T 14-09-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 PAJ_RS14195 f7f269b096820e44bd52754c61bb31be 528 SUPERFAMILY SSF54980 392 467 3.96E-17 T 14-09-2016 IPR009022 Elongation factor G, III-V domain PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 PANTHER PTHR10584 17 292 4.6E-196 T 14-09-2016 PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 PANTHER PTHR10584 331 375 4.6E-196 T 14-09-2016 PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 Pfam PF00294 pfkB family carbohydrate kinase 137 293 7.9E-9 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 Gene3D G3DSA:3.30.1110.10 44 94 9.8E-7 T 14-09-2016 PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 351 364 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 PANTHER PTHR10584:SF202 392 433 4.6E-196 T 14-09-2016 PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 PANTHER PTHR10584:SF202 17 292 4.6E-196 T 14-09-2016 PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 PANTHER PTHR10584:SF202 331 375 4.6E-196 T 14-09-2016 PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 Gene3D G3DSA:3.40.1190.20 336 432 6.1E-47 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 Gene3D G3DSA:3.40.1190.20 95 297 6.1E-47 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 PANTHER PTHR10584 392 433 4.6E-196 T 14-09-2016 PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 SUPERFAMILY SSF53613 35 304 1.28E-43 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS01900 9a931f60b83fc7bab9dc9ac22bac97c9 433 SUPERFAMILY SSF53613 337 415 1.28E-43 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS04415 e360c5dbe2490f239a51156cd68ccb49 213 Pfam PF04337 Protein of unknown function, DUF480 6 158 2.3E-64 T 14-09-2016 IPR007432 Protein of unknown function DUF480 PAJ_RS04415 e360c5dbe2490f239a51156cd68ccb49 213 SUPERFAMILY SSF46785 3 84 2.9E-31 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04415 e360c5dbe2490f239a51156cd68ccb49 213 Gene3D G3DSA:1.10.10.10 4 87 8.4E-38 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04415 e360c5dbe2490f239a51156cd68ccb49 213 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 210 34.036 T 14-09-2016 IPR007432 Protein of unknown function DUF480 PAJ_RS04415 e360c5dbe2490f239a51156cd68ccb49 213 Gene3D G3DSA:1.10.10.10 95 171 2.8E-35 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04415 e360c5dbe2490f239a51156cd68ccb49 213 SUPERFAMILY SSF46785 90 171 1.13E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04415 e360c5dbe2490f239a51156cd68ccb49 213 PANTHER PTHR38768:SF1 1 211 7.5E-80 T 14-09-2016 PAJ_RS04415 e360c5dbe2490f239a51156cd68ccb49 213 PANTHER PTHR38768 1 211 7.5E-80 T 14-09-2016 PAJ_RS10685 bf94fc375a05d62b814c083aaea2fd39 420 SUPERFAMILY SSF53383 23 418 7.54E-125 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS10685 bf94fc375a05d62b814c083aaea2fd39 420 Gene3D G3DSA:3.40.640.10 58 304 2.6E-82 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS10685 bf94fc375a05d62b814c083aaea2fd39 420 PANTHER PTHR11986 5 417 6.7E-179 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS10685 bf94fc375a05d62b814c083aaea2fd39 420 Pfam PF00202 Aminotransferase class-III 24 417 4.6E-118 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS10685 bf94fc375a05d62b814c083aaea2fd39 420 PANTHER PTHR11986:SF17 5 417 6.7E-179 T 14-09-2016 PAJ_RS10685 bf94fc375a05d62b814c083aaea2fd39 420 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 9 417 1.7E-181 T 14-09-2016 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 PAJ_RS10685 bf94fc375a05d62b814c083aaea2fd39 420 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 273 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS10685 bf94fc375a05d62b814c083aaea2fd39 420 Gene3D G3DSA:3.90.1150.10 305 418 4.5E-34 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 Gene3D G3DSA:1.10.287.380 879 936 2.8E-7 T 14-09-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 949 16.207 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PANTHER PTHR11946 608 860 0.0 T 14-09-2016 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PANTHER PTHR11946 880 942 0.0 T 14-09-2016 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PANTHER PTHR11946 1 314 0.0 T 14-09-2016 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PANTHER PTHR11946 333 570 0.0 T 14-09-2016 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PRINTS PR00986 Valyl-tRNA synthetase signature 500 518 1.4E-35 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PRINTS PR00986 Valyl-tRNA synthetase signature 469 490 1.4E-35 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 1.4E-35 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PRINTS PR00986 Valyl-tRNA synthetase signature 35 46 1.4E-35 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PRINTS PR00986 Valyl-tRNA synthetase signature 369 382 1.4E-35 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 Pfam PF08264 Anticodon-binding domain of tRNA 674 824 4.6E-46 T 14-09-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PANTHER PTHR11946:SF5 608 860 0.0 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PANTHER PTHR11946:SF5 1 314 0.0 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PANTHER PTHR11946:SF5 880 942 0.0 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 PANTHER PTHR11946:SF5 333 570 0.0 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 886 944 2.6E-17 T 14-09-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 SUPERFAMILY SSF47323 642 896 6.92E-70 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 SUPERFAMILY SSF46589 884 947 1.05E-14 T 14-09-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 Gene3D G3DSA:3.40.50.620 3 193 3.2E-141 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 Gene3D G3DSA:3.40.50.620 609 630 3.2E-141 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 Gene3D G3DSA:3.40.50.620 364 571 3.2E-141 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 SUPERFAMILY SSF50677 191 365 5.49E-57 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 SUPERFAMILY SSF52374 364 571 3.18E-136 T 14-09-2016 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 SUPERFAMILY SSF52374 1 192 3.18E-136 T 14-09-2016 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 SUPERFAMILY SSF52374 609 641 3.18E-136 T 14-09-2016 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 Gene3D G3DSA:3.90.740.10 194 360 7.4E-47 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 Gene3D G3DSA:1.10.730.10 631 816 3.3E-67 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 631 7.4E-227 T 14-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS20095 8dd49bbb219a8b034462679eab729368 951 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 930 0.0 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PAJ_RS17300 622449f19b16a4df5bb97060436b2d55 218 PANTHER PTHR30471:SF5 5 218 2.9E-116 T 14-09-2016 PAJ_RS17300 622449f19b16a4df5bb97060436b2d55 218 SUPERFAMILY SSF47781 13 81 2.94E-8 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PAJ_RS17300 622449f19b16a4df5bb97060436b2d55 218 PANTHER PTHR30471 5 218 2.9E-116 T 14-09-2016 PAJ_RS17300 622449f19b16a4df5bb97060436b2d55 218 Pfam PF04002 RadC-like JAB domain 98 216 2.7E-43 T 14-09-2016 IPR025657 RadC-like JAB domain PAJ_RS17300 622449f19b16a4df5bb97060436b2d55 218 Gene3D G3DSA:3.40.140.10 95 218 1.4E-48 T 14-09-2016 PAJ_RS17300 622449f19b16a4df5bb97060436b2d55 218 Hamap MF_00018 UPF0758 protein YicR [yicR]. 1 218 48.992 T 14-09-2016 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily PAJ_RS17300 622449f19b16a4df5bb97060436b2d55 218 TIGRFAM TIGR00608 radc: DNA repair protein RadC 6 218 1.2E-81 T 14-09-2016 IPR001405 RadC protein PAJ_RS17300 622449f19b16a4df5bb97060436b2d55 218 SUPERFAMILY SSF102712 138 184 2.48E-5 T 14-09-2016 PAJ_RS17300 622449f19b16a4df5bb97060436b2d55 218 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 167 172 - T 14-09-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 313 397 8.3E-10 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 SUPERFAMILY SSF46626 172 287 1.03E-18 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 PANTHER PTHR35008 8 428 5.4E-198 T 14-09-2016 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 SUPERFAMILY SSF46626 315 419 6.84E-22 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 PANTHER PTHR35008:SF3 8 428 5.4E-198 T 14-09-2016 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 Pfam PF00034 Cytochrome c 28 126 1.2E-6 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 PIRSF PIRSF000018 1 434 5.7E-178 T 14-09-2016 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 SUPERFAMILY SSF46626 17 152 1.66E-23 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 Gene3D G3DSA:1.10.760.10 171 287 8.5E-13 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 Gene3D G3DSA:1.10.760.10 24 126 1.4E-19 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 Gene3D G3DSA:1.10.760.10 315 427 8.7E-27 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 PRINTS PR00605 Class IC cytochrome C signature 375 397 3.8E-6 T 14-09-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PAJ_RS19150 a9b33577c4d9237be11a71c2c3e4621e 436 PRINTS PR00605 Class IC cytochrome C signature 322 333 3.8E-6 T 14-09-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PAJ_RS02855 d94b386a8bb2071d7378ed9ffdad54fe 240 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 22 230 2.4E-64 T 14-09-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 PAJ_RS02855 d94b386a8bb2071d7378ed9ffdad54fe 240 PANTHER PTHR36122:SF2 133 240 1.3E-112 T 14-09-2016 PAJ_RS02855 d94b386a8bb2071d7378ed9ffdad54fe 240 PANTHER PTHR36122:SF2 1 110 1.3E-112 T 14-09-2016 PAJ_RS02855 d94b386a8bb2071d7378ed9ffdad54fe 240 Pfam PF04973 Nicotinamide mononucleotide transporter 23 226 2.9E-50 T 14-09-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 PAJ_RS02855 d94b386a8bb2071d7378ed9ffdad54fe 240 PANTHER PTHR36122 133 240 1.3E-112 T 14-09-2016 PAJ_RS02855 d94b386a8bb2071d7378ed9ffdad54fe 240 PANTHER PTHR36122 1 110 1.3E-112 T 14-09-2016 PAJ_RS00270 cfe8daee68731d3f7768ee4f2e576976 163 SUPERFAMILY SSF55021 79 162 1.52E-25 T 14-09-2016 PAJ_RS00270 cfe8daee68731d3f7768ee4f2e576976 163 Pfam PF10369 Small subunit of acetolactate synthase 84 158 1.2E-23 T 14-09-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS00270 cfe8daee68731d3f7768ee4f2e576976 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 159 5.2E-67 T 14-09-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS00270 cfe8daee68731d3f7768ee4f2e576976 163 Gene3D G3DSA:3.30.70.1150 83 162 5.7E-27 T 14-09-2016 PAJ_RS00270 cfe8daee68731d3f7768ee4f2e576976 163 PANTHER PTHR30239 1 162 2.8E-94 T 14-09-2016 PAJ_RS00270 cfe8daee68731d3f7768ee4f2e576976 163 Gene3D G3DSA:3.30.70.260 1 76 7.8E-36 T 14-09-2016 PAJ_RS00270 cfe8daee68731d3f7768ee4f2e576976 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 5.0E-36 T 14-09-2016 PAJ_RS00270 cfe8daee68731d3f7768ee4f2e576976 163 SUPERFAMILY SSF55021 2 75 1.99E-22 T 14-09-2016 PAJ_RS00270 cfe8daee68731d3f7768ee4f2e576976 163 Pfam PF01842 ACT domain 4 68 5.6E-15 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 Pfam PF13476 AAA domain 6 235 1.1E-24 T 14-09-2016 PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1103 1180 3.7E-15 T 14-09-2016 PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 PANTHER PTHR32114:SF2 825 1223 1.2E-115 T 14-09-2016 PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 PANTHER PTHR32114:SF2 373 725 1.2E-115 T 14-09-2016 PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 PANTHER PTHR32114:SF2 2 350 1.2E-115 T 14-09-2016 PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 SUPERFAMILY SSF52540 1 182 4.95E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 SUPERFAMILY SSF52540 296 387 4.95E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 Gene3D G3DSA:3.40.50.300 1 164 2.5E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 Gene3D G3DSA:3.40.50.300 174 248 7.4E-4 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 Gene3D G3DSA:3.40.1140.10 1128 1199 1.9E-8 T 14-09-2016 PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 PANTHER PTHR32114 825 1223 1.2E-115 T 14-09-2016 IPR027050 Nuclease SbcCD subunit C GO:0004518|GO:0006281 PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 PANTHER PTHR32114 373 725 1.2E-115 T 14-09-2016 IPR027050 Nuclease SbcCD subunit C GO:0004518|GO:0006281 PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 PANTHER PTHR32114 2 350 1.2E-115 T 14-09-2016 IPR027050 Nuclease SbcCD subunit C GO:0004518|GO:0006281 PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 SUPERFAMILY SSF52540 1 58 1.64E-24 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01490 cdacfc18953272ac073ba184fea7dd4e 1224 SUPERFAMILY SSF52540 1003 1198 1.64E-24 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06930 8634c54c4e30ad3cca6b609e09e02954 277 Pfam PF13276 HTH-like domain 36 91 3.3E-15 T 14-09-2016 IPR025948 HTH-like domain PAJ_RS06930 8634c54c4e30ad3cca6b609e09e02954 277 Gene3D G3DSA:3.30.420.10 101 256 3.0E-40 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS06930 8634c54c4e30ad3cca6b609e09e02954 277 PANTHER PTHR32552:SF35 1 259 1.1E-131 T 14-09-2016 PAJ_RS06930 8634c54c4e30ad3cca6b609e09e02954 277 PANTHER PTHR32552 1 259 1.1E-131 T 14-09-2016 PAJ_RS06930 8634c54c4e30ad3cca6b609e09e02954 277 SUPERFAMILY SSF53098 100 260 4.43E-40 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS06930 8634c54c4e30ad3cca6b609e09e02954 277 Pfam PF13683 Integrase core domain 191 256 9.0E-32 T 14-09-2016 IPR001584 Integrase, catalytic core GO:0015074 PAJ_RS15045 246c2db8c0224b71be3711a7e1719254 335 SUPERFAMILY SSF53328 30 231 1.03E-53 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15045 246c2db8c0224b71be3711a7e1719254 335 PANTHER PTHR11138 10 317 4.8E-61 T 14-09-2016 PAJ_RS15045 246c2db8c0224b71be3711a7e1719254 335 Pfam PF00551 Formyl transferase 88 204 6.1E-25 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15045 246c2db8c0224b71be3711a7e1719254 335 Gene3D G3DSA:3.40.50.170 30 227 4.1E-52 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15045 246c2db8c0224b71be3711a7e1719254 335 Gene3D G3DSA:3.10.25.10 233 333 3.4E-26 T 14-09-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15045 246c2db8c0224b71be3711a7e1719254 335 Pfam PF02911 Formyl transferase, C-terminal domain 231 321 4.8E-22 T 14-09-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS15045 246c2db8c0224b71be3711a7e1719254 335 SUPERFAMILY SSF50486 231 333 1.88E-25 T 14-09-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 PAJ_RS13215 2c06369cf2d5b375dbef9f595c37ff7d 72 PANTHER PTHR37011 1 72 2.4E-29 T 14-09-2016 PAJ_RS13215 2c06369cf2d5b375dbef9f595c37ff7d 72 SUPERFAMILY SSF50182 21 71 7.63E-18 T 14-09-2016 IPR010920 LSM domain PAJ_RS13215 2c06369cf2d5b375dbef9f595c37ff7d 72 Gene3D G3DSA:2.30.30.100 20 72 3.3E-28 T 14-09-2016 PAJ_RS13215 2c06369cf2d5b375dbef9f595c37ff7d 72 PANTHER PTHR37011:SF1 1 72 2.4E-29 T 14-09-2016 PAJ_RS13215 2c06369cf2d5b375dbef9f595c37ff7d 72 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 71 2.4E-23 T 14-09-2016 IPR010305 Protein of unknown function DUF903 PAJ_RS12080 c727722afb1459b9b731c0afad5362c5 250 Pfam PF05175 Methyltransferase small domain 50 131 4.6E-13 T 14-09-2016 IPR007848 Methyltransferase small domain GO:0008168 PAJ_RS12080 c727722afb1459b9b731c0afad5362c5 250 PANTHER PTHR18895:SF73 38 239 4.0E-78 T 14-09-2016 PAJ_RS12080 c727722afb1459b9b731c0afad5362c5 250 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 123 129 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS12080 c727722afb1459b9b731c0afad5362c5 250 SUPERFAMILY SSF53335 15 197 1.56E-29 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS12080 c727722afb1459b9b731c0afad5362c5 250 PANTHER PTHR18895 38 239 4.0E-78 T 14-09-2016 PAJ_RS12080 c727722afb1459b9b731c0afad5362c5 250 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 15 249 54.392 T 14-09-2016 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 KEGG: 00340+2.1.1.22 PAJ_RS12080 c727722afb1459b9b731c0afad5362c5 250 Gene3D G3DSA:3.40.50.150 36 242 2.5E-42 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 Gene3D G3DSA:2.40.50.140 2 64 2.1E-24 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 PANTHER PTHR33796 2 202 2.4E-81 T 14-09-2016 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 SUPERFAMILY SSF50249 2 63 1.54E-16 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 SMART SM00278 73 92 0.054 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 SMART SM00278 108 127 0.1 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 31.895 T 14-09-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 Gene3D G3DSA:1.10.8.10 157 201 1.8E-22 T 14-09-2016 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 Gene3D G3DSA:1.10.150.20 67 138 2.9E-32 T 14-09-2016 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 SUPERFAMILY SSF46929 158 202 2.09E-10 T 14-09-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 203 1.5E-68 T 14-09-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 Pfam PF07499 RuvA, C-terminal domain 160 202 9.9E-15 T 14-09-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 Pfam PF01330 RuvA N terminal domain 2 62 1.7E-16 T 14-09-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 Pfam PF14520 Helix-hairpin-helix domain 72 130 6.5E-17 T 14-09-2016 PAJ_RS08380 b78fcbf27fe65d9782fa850011cc13c6 204 SUPERFAMILY SSF47781 66 136 9.73E-23 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PAJ_RS01635 9f83f5daca53527752c79fae70825ca7 199 Gene3D G3DSA:3.40.50.880 6 191 3.6E-55 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS01635 9f83f5daca53527752c79fae70825ca7 199 PANTHER PTHR11019:SF4 1 196 2.1E-68 T 14-09-2016 PAJ_RS01635 9f83f5daca53527752c79fae70825ca7 199 SUPERFAMILY SSF52317 6 191 4.03E-46 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS01635 9f83f5daca53527752c79fae70825ca7 199 Pfam PF01965 DJ-1/PfpI family 6 172 1.1E-45 T 14-09-2016 IPR002818 DJ-1/PfpI PAJ_RS01635 9f83f5daca53527752c79fae70825ca7 199 PANTHER PTHR11019 1 196 2.1E-68 T 14-09-2016 PAJ_RS01635 9f83f5daca53527752c79fae70825ca7 199 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 7 185 8.2E-60 T 14-09-2016 IPR006287 DJ-1 PAJ_RS00890 38021b261265ecf3ea2070a874f3ec8e 244 Pfam PF08241 Methyltransferase domain 77 125 2.2E-9 T 14-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 PAJ_RS00890 38021b261265ecf3ea2070a874f3ec8e 244 PANTHER PTHR10108 77 219 8.0E-70 T 14-09-2016 PAJ_RS00890 38021b261265ecf3ea2070a874f3ec8e 244 Gene3D G3DSA:3.40.50.150 79 206 1.8E-14 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS00890 38021b261265ecf3ea2070a874f3ec8e 244 PANTHER PTHR10108:SF836 77 219 8.0E-70 T 14-09-2016 PAJ_RS00890 38021b261265ecf3ea2070a874f3ec8e 244 SUPERFAMILY SSF53335 78 186 3.71E-15 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03135 82260a5ee6d9b518fb1b7e0976cd2155 315 Gene3D G3DSA:3.10.580.10 266 309 2.8E-4 T 14-09-2016 PAJ_RS03135 82260a5ee6d9b518fb1b7e0976cd2155 315 Gene3D G3DSA:3.40.50.300 1 235 2.6E-77 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03135 82260a5ee6d9b518fb1b7e0976cd2155 315 PANTHER PTHR24220:SF434 3 295 2.2E-151 T 14-09-2016 PAJ_RS03135 82260a5ee6d9b518fb1b7e0976cd2155 315 Pfam PF00005 ABC transporter 17 162 7.1E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03135 82260a5ee6d9b518fb1b7e0976cd2155 315 PANTHER PTHR24220 3 295 2.2E-151 T 14-09-2016 PAJ_RS03135 82260a5ee6d9b518fb1b7e0976cd2155 315 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03135 82260a5ee6d9b518fb1b7e0976cd2155 315 SMART SM00382 26 212 1.5E-17 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03135 82260a5ee6d9b518fb1b7e0976cd2155 315 SUPERFAMILY SSF52540 1 239 1.26E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03135 82260a5ee6d9b518fb1b7e0976cd2155 315 SUPERFAMILY SSF54631 265 310 5.9E-6 T 14-09-2016 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 Pfam PF07687 Peptidase dimerisation domain 208 311 1.2E-7 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 Gene3D G3DSA:3.40.630.10 6 211 8.5E-91 T 14-09-2016 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 Gene3D G3DSA:3.40.630.10 324 407 8.5E-91 T 14-09-2016 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 PANTHER PTHR11014 135 408 1.4E-148 T 14-09-2016 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 TIGRFAM TIGR01882 peptidase-T: peptidase T 8 403 1.0E-95 T 14-09-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 SUPERFAMILY SSF53187 8 212 2.33E-69 T 14-09-2016 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 SUPERFAMILY SSF53187 324 406 2.33E-69 T 14-09-2016 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 Pfam PF01546 Peptidase family M20/M25/M40 143 402 3.4E-9 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 Gene3D G3DSA:3.30.70.360 212 321 1.0E-35 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 PANTHER PTHR11014 1 95 1.4E-148 T 14-09-2016 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 PANTHER PTHR11014:SF3 135 408 1.4E-148 T 14-09-2016 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 PIRSF PIRSF037215 4 408 7.9E-140 T 14-09-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 PANTHER PTHR11014:SF3 1 95 1.4E-148 T 14-09-2016 PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 SUPERFAMILY SSF55031 211 321 6.28E-31 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS07290 0ea3fac55d402eae04cea4d6d7029f60 408 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 142 177 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PAJ_RS08210 e7529b27e8e072951374661900acd949 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS08210 e7529b27e8e072951374661900acd949 490 Gene3D G3DSA:3.40.309.10 266 444 1.5E-66 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS08210 e7529b27e8e072951374661900acd949 490 PANTHER PTHR11699:SF115 1 483 0.0 T 14-09-2016 PAJ_RS08210 e7529b27e8e072951374661900acd949 490 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 477 2.0E-233 T 14-09-2016 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PAJ_RS08210 e7529b27e8e072951374661900acd949 490 PANTHER PTHR11699 1 483 0.0 T 14-09-2016 PAJ_RS08210 e7529b27e8e072951374661900acd949 490 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 490 57.352 T 14-09-2016 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PAJ_RS08210 e7529b27e8e072951374661900acd949 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS08210 e7529b27e8e072951374661900acd949 490 SUPERFAMILY SSF53720 6 482 1.31E-172 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS08210 e7529b27e8e072951374661900acd949 490 Pfam PF00171 Aldehyde dehydrogenase family 16 479 1.1E-176 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS08210 e7529b27e8e072951374661900acd949 490 Gene3D G3DSA:3.40.605.10 6 265 6.4E-105 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS06580 a67e122e252bd918021cdfe67ae1a6f3 753 PANTHER PTHR11851 9 231 5.7E-31 T 14-09-2016 PAJ_RS06580 a67e122e252bd918021cdfe67ae1a6f3 753 Pfam PF00675 Insulinase (Peptidase family M16) 13 150 4.2E-34 T 14-09-2016 IPR011765 Peptidase M16, N-terminal PAJ_RS06580 a67e122e252bd918021cdfe67ae1a6f3 753 SUPERFAMILY SSF63411 594 748 4.63E-15 T 14-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PAJ_RS06580 a67e122e252bd918021cdfe67ae1a6f3 753 TIGRFAM TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF 7 678 5.5E-183 T 14-09-2016 IPR011844 Coenzyme PQQ biosynthesis protein PqqF GO:0004222|GO:0006508|GO:0008270|GO:0018189 UniPathway: UPA00539 PAJ_RS06580 a67e122e252bd918021cdfe67ae1a6f3 753 Gene3D G3DSA:3.30.830.10 9 218 1.4E-37 T 14-09-2016 IPR011237 Peptidase M16 domain GO:0046872 PAJ_RS06580 a67e122e252bd918021cdfe67ae1a6f3 753 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 33 56 - T 14-09-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 PAJ_RS06580 a67e122e252bd918021cdfe67ae1a6f3 753 Gene3D G3DSA:3.30.830.10 591 747 2.4E-17 T 14-09-2016 IPR011237 Peptidase M16 domain GO:0046872 PAJ_RS06580 a67e122e252bd918021cdfe67ae1a6f3 753 SUPERFAMILY SSF63411 9 208 3.47E-32 T 14-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PAJ_RS03270 d48e81a0375b6d1de43a858b98e33040 219 PANTHER PTHR30614 1 219 1.6E-164 T 14-09-2016 PAJ_RS03270 d48e81a0375b6d1de43a858b98e33040 219 SUPERFAMILY SSF161098 13 202 6.8E-44 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03270 d48e81a0375b6d1de43a858b98e33040 219 PANTHER PTHR30614:SF13 1 219 1.6E-164 T 14-09-2016 PAJ_RS03270 d48e81a0375b6d1de43a858b98e33040 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 111 9.3E-31 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS03270 d48e81a0375b6d1de43a858b98e33040 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 217 1.3E-23 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03270 d48e81a0375b6d1de43a858b98e33040 219 Gene3D G3DSA:1.10.3720.10 12 217 8.1E-49 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 Gene3D G3DSA:4.10.520.10 2 93 3.0E-36 T 14-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 SUPERFAMILY SSF47729 3 93 1.38E-31 T 14-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 PANTHER PTHR33175 2 100 7.2E-57 T 14-09-2016 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 97 1.7E-54 T 14-09-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.2E-17 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.2E-17 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.2E-17 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 14-09-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 Pfam PF00216 Bacterial DNA-binding protein 3 91 2.6E-30 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 SMART SM00411 3 92 2.5E-43 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 PANTHER PTHR33175:SF2 2 100 7.2E-57 T 14-09-2016 PAJ_RS05790 9632cf1f32de07b4790ce04af651dd4f 100 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 31.062 T 14-09-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 PAJ_RS05535 d454b301eaa88c13da5da3257716eee1 232 Gene3D G3DSA:3.10.490.10 49 216 2.8E-43 T 14-09-2016 IPR013024 Butirosin biosynthesis, BtrG-like PAJ_RS05535 d454b301eaa88c13da5da3257716eee1 232 SUPERFAMILY SSF110857 55 168 1.7E-9 T 14-09-2016 IPR013024 Butirosin biosynthesis, BtrG-like PAJ_RS05535 d454b301eaa88c13da5da3257716eee1 232 PANTHER PTHR12192:SF9 1 224 3.7E-99 T 14-09-2016 PAJ_RS05535 d454b301eaa88c13da5da3257716eee1 232 PANTHER PTHR12192 1 224 3.7E-99 T 14-09-2016 IPR006840 ChaC-like protein PAJ_RS05535 d454b301eaa88c13da5da3257716eee1 232 Pfam PF04752 ChaC-like protein 55 222 5.1E-46 T 14-09-2016 IPR006840 ChaC-like protein PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 SUPERFAMILY SSF55785 151 253 2.27E-25 T 14-09-2016 IPR000014 PAS domain PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 SMART SM00086 92 134 0.012 T 14-09-2016 IPR001610 PAC motif PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 SMART SM00086 214 256 6.5E-4 T 14-09-2016 IPR001610 PAC motif PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 PANTHER PTHR24422 2 433 1.3E-145 T 14-09-2016 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 SUPERFAMILY SSF55785 30 131 1.01E-21 T 14-09-2016 IPR000014 PAS domain PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 30 139 1.3E-9 T 14-09-2016 IPR000014 PAS domain PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 260 1.0E-17 T 14-09-2016 IPR000014 PAS domain PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 Gene3D G3DSA:1.10.287.950 252 435 1.3E-37 T 14-09-2016 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 SMART SM00091 139 209 2.4E-4 T 14-09-2016 IPR000014 PAS domain PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 SMART SM00091 17 87 1.5 T 14-09-2016 IPR000014 PAS domain PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 Pfam PF08447 PAS fold 164 249 1.9E-16 T 14-09-2016 IPR013655 PAS fold-3 GO:0005515 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 SMART SM00283 245 440 1.5E-4 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 SUPERFAMILY SSF58104 240 434 3.14E-39 T 14-09-2016 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 Gene3D G3DSA:3.30.450.20 152 251 1.5E-25 T 14-09-2016 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 Gene3D G3DSA:3.30.450.20 30 133 4.3E-20 T 14-09-2016 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 PANTHER PTHR24422:SF10 2 433 1.3E-145 T 14-09-2016 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 Pfam PF08448 PAS fold 30 134 3.6E-11 T 14-09-2016 IPR013656 PAS fold-4 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 402 431 2.8E-17 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 354 383 2.8E-17 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 325 352 2.8E-17 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS17800 0482e55a83f0e49d0cbe6d9553332a0e 440 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 274 436 8.8E-29 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 Gene3D G3DSA:1.10.10.60 137 186 3.8E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 Pfam PF02805 Metal binding domain of Ada 7 70 1.2E-28 T 14-09-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 SUPERFAMILY SSF55945 199 296 6.59E-30 T 14-09-2016 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 SUPERFAMILY SSF46689 136 186 2.96E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 137 179 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 SUPERFAMILY SSF57884 2 76 1.44E-30 T 14-09-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 PANTHER PTHR10242:SF3 54 241 1.8E-84 T 14-09-2016 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 PANTHER PTHR10242:SF3 262 480 1.8E-84 T 14-09-2016 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 Gene3D G3DSA:3.30.310.20 198 315 6.8E-39 T 14-09-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 SMART SM00478 325 480 6.4E-11 T 14-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 Gene3D G3DSA:1.10.1670.10 436 479 1.5E-18 T 14-09-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 ProSitePatterns PS00516 Alkylbase DNA glycosidases alkA family signature. 419 443 - T 14-09-2016 IPR000035 Alkylbase DNA glycosidase, conserved site GO:0003905|GO:0006281 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 Gene3D G3DSA:1.10.340.30 318 435 9.1E-33 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 321 450 1.5E-9 T 14-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 SMART SM00342 100 183 4.1E-25 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 Pfam PF06029 AlkA N-terminal domain 199 315 1.0E-38 T 14-09-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 Gene3D G3DSA:3.40.10.10 3 78 1.1E-31 T 14-09-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 SUPERFAMILY SSF48150 304 478 2.09E-43 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 PANTHER PTHR10242 262 480 1.8E-84 T 14-09-2016 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 PANTHER PTHR10242 54 241 1.8E-84 T 14-09-2016 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 SMART SM01009 198 315 1.2E-55 T 14-09-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 Gene3D G3DSA:1.10.10.60 80 136 2.2E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS02840 83738238465deb12cac3c06d36ef19ed 480 Pfam PF12833 Helix-turn-helix domain 106 184 4.0E-22 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS00840 d3b5f29448800bc6a72cca179587b2e0 186 Pfam PF13242 HAD-hyrolase-like 109 179 1.4E-12 T 14-09-2016 PAJ_RS00840 d3b5f29448800bc6a72cca179587b2e0 186 PANTHER PTHR23133:SF3 6 185 1.2E-69 T 14-09-2016 PAJ_RS00840 d3b5f29448800bc6a72cca179587b2e0 186 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 7 155 2.4E-40 T 14-09-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA PAJ_RS00840 d3b5f29448800bc6a72cca179587b2e0 186 PIRSF PIRSF004682 1 186 1.5E-67 T 14-09-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 PAJ_RS00840 d3b5f29448800bc6a72cca179587b2e0 186 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 6 180 3.4E-91 T 14-09-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 PAJ_RS00840 d3b5f29448800bc6a72cca179587b2e0 186 PANTHER PTHR23133 6 185 1.2E-69 T 14-09-2016 PAJ_RS00840 d3b5f29448800bc6a72cca179587b2e0 186 Gene3D G3DSA:3.40.50.1000 3 183 4.8E-64 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS00840 d3b5f29448800bc6a72cca179587b2e0 186 SUPERFAMILY SSF56784 3 184 5.97E-54 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS00840 d3b5f29448800bc6a72cca179587b2e0 186 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 156 7.6E-41 T 14-09-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 PAJ_RS10985 d5edc3bc184bea569605a078b1fb209a 205 SMART SM00382 26 200 2.5E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10985 d5edc3bc184bea569605a078b1fb209a 205 Gene3D G3DSA:3.40.50.300 1 185 2.5E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10985 d5edc3bc184bea569605a078b1fb209a 205 Pfam PF00005 ABC transporter 19 154 6.3E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10985 d5edc3bc184bea569605a078b1fb209a 205 ProSitePatterns PS00211 ABC transporters family signature. 127 141 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS10985 d5edc3bc184bea569605a078b1fb209a 205 SUPERFAMILY SSF52540 2 185 3.08E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10985 d5edc3bc184bea569605a078b1fb209a 205 PANTHER PTHR24220 3 185 1.4E-91 T 14-09-2016 PAJ_RS10985 d5edc3bc184bea569605a078b1fb209a 205 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 191 1.3E-79 T 14-09-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 PAJ_RS10985 d5edc3bc184bea569605a078b1fb209a 205 PANTHER PTHR24220:SF508 3 185 1.4E-91 T 14-09-2016 PAJ_RS12710 eb54760d2d803a56e14aa6711d876e41 428 Gene3D G3DSA:3.10.580.10 191 318 2.0E-11 T 14-09-2016 PAJ_RS12710 eb54760d2d803a56e14aa6711d876e41 428 PANTHER PTHR22777:SF3 1 418 1.1E-145 T 14-09-2016 PAJ_RS12710 eb54760d2d803a56e14aa6711d876e41 428 Pfam PF03471 Transporter associated domain 344 419 1.3E-19 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS12710 eb54760d2d803a56e14aa6711d876e41 428 PANTHER PTHR22777 1 418 1.1E-145 T 14-09-2016 PAJ_RS12710 eb54760d2d803a56e14aa6711d876e41 428 Pfam PF00571 CBS domain 278 326 4.5E-4 T 14-09-2016 IPR000644 CBS domain PAJ_RS12710 eb54760d2d803a56e14aa6711d876e41 428 SMART SM01091 342 420 4.6E-23 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS12710 eb54760d2d803a56e14aa6711d876e41 428 SUPERFAMILY SSF54631 192 329 6.95E-23 T 14-09-2016 PAJ_RS12710 eb54760d2d803a56e14aa6711d876e41 428 Gene3D G3DSA:3.30.465.10 319 418 2.0E-24 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS12710 eb54760d2d803a56e14aa6711d876e41 428 SUPERFAMILY SSF56176 340 421 3.54E-21 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS12710 eb54760d2d803a56e14aa6711d876e41 428 Pfam PF01595 Domain of unknown function DUF21 13 184 7.0E-49 T 14-09-2016 IPR002550 Domain of unknown function DUF21 PAJ_RS19070 57434d39ef9d2785eea0ecb7509f690b 143 Pfam PF03788 LrgA family 31 123 9.5E-27 T 14-09-2016 IPR005538 LrgA/CidA family GO:0016021 PAJ_RS19070 57434d39ef9d2785eea0ecb7509f690b 143 PANTHER PTHR33931:SF3 8 137 4.4E-55 T 14-09-2016 PAJ_RS19070 57434d39ef9d2785eea0ecb7509f690b 143 PANTHER PTHR33931 8 137 4.4E-55 T 14-09-2016 PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 Gene3D G3DSA:1.10.10.10 16 88 9.9E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 84 5.2E-21 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 1.2E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 1.2E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 Gene3D G3DSA:3.40.1410.10 102 238 2.3E-49 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 PANTHER PTHR11751:SF364 18 108 3.1E-42 T 14-09-2016 PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 PANTHER PTHR11751 18 108 3.1E-42 T 14-09-2016 PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 SUPERFAMILY SSF64288 72 247 1.88E-42 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 20 247 4.3E-102 T 14-09-2016 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 UniPathway: UPA00379 PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 SMART SM00345 25 84 2.0E-18 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 SMART SM00866 105 242 4.9E-33 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 Pfam PF07702 UTRA domain 105 242 6.7E-34 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PAJ_RS03200 09fe355a35d03794e9d58ff81edeeb1c 251 SUPERFAMILY SSF46785 17 88 8.79E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05985 61b0f247351a14051bb249fce10b4385 172 Gene3D G3DSA:2.60.40.200 24 172 1.5E-45 T 14-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS05985 61b0f247351a14051bb249fce10b4385 172 SUPERFAMILY SSF49329 24 172 1.96E-47 T 14-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS05985 61b0f247351a14051bb249fce10b4385 172 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 35 172 1.6E-30 T 14-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS05985 61b0f247351a14051bb249fce10b4385 172 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 65 75 - T 14-09-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854 PAJ_RS05985 61b0f247351a14051bb249fce10b4385 172 PANTHER PTHR10003:SF40 1 172 4.3E-63 T 14-09-2016 PAJ_RS05985 61b0f247351a14051bb249fce10b4385 172 PANTHER PTHR10003 1 172 4.3E-63 T 14-09-2016 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone MetaCyc: PWY-6854 PAJ_RS05985 61b0f247351a14051bb249fce10b4385 172 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 161 172 - T 14-09-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854 PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Pfam PF02151 UvrB/uvrC motif 634 667 7.4E-9 T 14-09-2016 IPR001943 UVR domain GO:0005515 PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 SMART SM00487 9 425 4.8E-27 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 SMART SM00490 460 546 1.6E-20 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 PANTHER PTHR24029 1 672 0.0 T 14-09-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 666 0.0 T 14-09-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Pfam PF04851 Type III restriction enzyme, res subunit 13 119 4.2E-9 T 14-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Gene3D G3DSA:3.40.50.300 419 580 2.4E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 SUPERFAMILY SSF52540 37 82 1.05E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 SUPERFAMILY SSF52540 459 585 1.05E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Pfam PF12344 Ultra-violet resistance protein B 552 593 3.5E-20 T 14-09-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Gene3D G3DSA:3.40.50.300 278 338 1.4E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Gene3D G3DSA:3.40.50.300 388 406 1.4E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Gene3D G3DSA:3.40.50.300 5 89 1.4E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Pfam PF00271 Helicase conserved C-terminal domain 434 545 7.1E-19 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Gene3D G3DSA:4.10.860.10 628 671 5.3E-19 T 14-09-2016 IPR001943 UVR domain GO:0005515 PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Gene3D G3DSA:3.30.2060.10 159 230 7.4E-11 T 14-09-2016 PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 668 43.685 T 14-09-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 SUPERFAMILY SSF46600 622 669 2.62E-12 T 14-09-2016 IPR001943 UVR domain GO:0005515 PAJ_RS02975 9b68ea315515c25d04bd90467765e400 673 SUPERFAMILY SSF52540 4 415 2.25E-135 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17850 fa0d4c948a39fc8bb2b4eb200d4340c1 377 SUPERFAMILY SSF46785 10 75 7.49E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS17850 fa0d4c948a39fc8bb2b4eb200d4340c1 377 Gene3D G3DSA:3.30.420.40 81 218 2.9E-25 T 14-09-2016 PAJ_RS17850 fa0d4c948a39fc8bb2b4eb200d4340c1 377 Gene3D G3DSA:3.30.420.40 219 364 1.4E-26 T 14-09-2016 PAJ_RS17850 fa0d4c948a39fc8bb2b4eb200d4340c1 377 SUPERFAMILY SSF53067 94 338 1.01E-29 T 14-09-2016 PAJ_RS17850 fa0d4c948a39fc8bb2b4eb200d4340c1 377 PANTHER PTHR18964:SF108 63 319 1.2E-41 T 14-09-2016 PAJ_RS17850 fa0d4c948a39fc8bb2b4eb200d4340c1 377 PANTHER PTHR18964 63 319 1.2E-41 T 14-09-2016 PAJ_RS17850 fa0d4c948a39fc8bb2b4eb200d4340c1 377 Gene3D G3DSA:1.10.10.10 10 80 8.8E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS17850 fa0d4c948a39fc8bb2b4eb200d4340c1 377 Pfam PF00480 ROK family 98 357 3.0E-37 T 14-09-2016 IPR000600 ROK family PAJ_RS17850 fa0d4c948a39fc8bb2b4eb200d4340c1 377 ProSitePatterns PS01125 ROK family signature. 213 240 - T 14-09-2016 IPR000600 ROK family PAJ_RS09570 5d09517019dee35d4e583d75251825d7 599 SUPERFAMILY SSF50494 61 262 7.32E-25 T 14-09-2016 IPR009003 Peptidase S1, PA clan PAJ_RS09570 5d09517019dee35d4e583d75251825d7 599 Pfam PF13365 Trypsin-like peptidase domain 87 238 9.5E-12 T 14-09-2016 PAJ_RS09570 5d09517019dee35d4e583d75251825d7 599 SMART SM00892 346 570 1.5E-32 T 14-09-2016 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 PAJ_RS09570 5d09517019dee35d4e583d75251825d7 599 Gene3D G3DSA:3.40.570.10 341 568 3.4E-37 T 14-09-2016 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 PAJ_RS09570 5d09517019dee35d4e583d75251825d7 599 PANTHER PTHR13966 345 567 3.8E-26 T 14-09-2016 PAJ_RS09570 5d09517019dee35d4e583d75251825d7 599 Gene3D G3DSA:2.40.10.10 83 125 3.0E-4 T 14-09-2016 PAJ_RS09570 5d09517019dee35d4e583d75251825d7 599 Pfam PF01223 DNA/RNA non-specific endonuclease 339 568 1.6E-41 T 14-09-2016 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 PAJ_RS09570 5d09517019dee35d4e583d75251825d7 599 SUPERFAMILY SSF54060 335 567 1.77E-39 T 14-09-2016 PAJ_RS09570 5d09517019dee35d4e583d75251825d7 599 SMART SM00477 347 574 1.6E-10 T 14-09-2016 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 PAJ_RS09570 5d09517019dee35d4e583d75251825d7 599 Gene3D G3DSA:2.40.10.10 150 247 6.7E-16 T 14-09-2016 PAJ_RS09385 9418c59fcebe9cdc389b9382783120f0 307 Gene3D G3DSA:3.40.190.10 129 219 5.2E-9 T 14-09-2016 PAJ_RS09385 9418c59fcebe9cdc389b9382783120f0 307 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 6 301 1.4E-89 T 14-09-2016 IPR017797 Phosphonate ABC transporter, periplasmic substrate-binding protein GO:0015604|GO:0015716|GO:0043190 PAJ_RS09385 9418c59fcebe9cdc389b9382783120f0 307 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 28 271 7.1E-49 T 14-09-2016 PAJ_RS09385 9418c59fcebe9cdc389b9382783120f0 307 PANTHER PTHR35841:SF1 6 303 4.6E-78 T 14-09-2016 PAJ_RS09385 9418c59fcebe9cdc389b9382783120f0 307 Gene3D G3DSA:3.40.190.10 51 128 2.7E-6 T 14-09-2016 PAJ_RS09385 9418c59fcebe9cdc389b9382783120f0 307 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 15 265 8.9E-77 T 14-09-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 PAJ_RS09385 9418c59fcebe9cdc389b9382783120f0 307 SUPERFAMILY SSF53850 42 296 1.59E-44 T 14-09-2016 PAJ_RS09385 9418c59fcebe9cdc389b9382783120f0 307 PANTHER PTHR35841 6 303 4.6E-78 T 14-09-2016 PAJ_RS09805 0f90e2994350d4a7fd720b0cbdcb21c8 196 PANTHER PTHR21235 2 196 1.2E-89 T 14-09-2016 PAJ_RS09805 0f90e2994350d4a7fd720b0cbdcb21c8 196 PANTHER PTHR21235:SF1 2 196 1.2E-89 T 14-09-2016 PAJ_RS09805 0f90e2994350d4a7fd720b0cbdcb21c8 196 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 196 1.0E-72 T 14-09-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 PAJ_RS09805 0f90e2994350d4a7fd720b0cbdcb21c8 196 Gene3D G3DSA:3.40.50.880 1 196 3.2E-71 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS09805 0f90e2994350d4a7fd720b0cbdcb21c8 196 Pfam PF00117 Glutamine amidotransferase class-I 7 194 1.1E-18 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PAJ_RS09805 0f90e2994350d4a7fd720b0cbdcb21c8 196 SUPERFAMILY SSF52317 3 195 5.92E-56 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS09805 0f90e2994350d4a7fd720b0cbdcb21c8 196 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 196 33.591 T 14-09-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 PAJ_RS09805 0f90e2994350d4a7fd720b0cbdcb21c8 196 PIRSF PIRSF000495 1 196 1.7E-65 T 14-09-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 PAJ_RS16880 09782225cc5605e768533fd936e16ea3 309 Pfam PF01063 Amino-transferase class IV 36 268 1.7E-48 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PAJ_RS16880 09782225cc5605e768533fd936e16ea3 309 PANTHER PTHR11825 1 306 3.0E-131 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PAJ_RS16880 09782225cc5605e768533fd936e16ea3 309 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 10 307 1.0E-143 T 14-09-2016 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|UniPathway: UPA00047|UniPathway: UPA00048|UniPathway: UPA00049 PAJ_RS16880 09782225cc5605e768533fd936e16ea3 309 Gene3D G3DSA:3.20.10.10 135 295 1.6E-57 T 14-09-2016 PAJ_RS16880 09782225cc5605e768533fd936e16ea3 309 PANTHER PTHR11825:SF7 1 306 3.0E-131 T 14-09-2016 PAJ_RS16880 09782225cc5605e768533fd936e16ea3 309 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 223 - T 14-09-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 PAJ_RS16880 09782225cc5605e768533fd936e16ea3 309 SUPERFAMILY SSF56752 7 307 3.53E-104 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PAJ_RS16880 09782225cc5605e768533fd936e16ea3 309 Gene3D G3DSA:3.30.470.10 7 130 2.6E-43 T 14-09-2016 PAJ_RS16375 912eb07fd3df33a11523e2b5bb729031 199 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 126 132 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS16375 912eb07fd3df33a11523e2b5bb729031 199 PIRSF PIRSF004553 13 193 3.4E-58 T 14-09-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS16375 912eb07fd3df33a11523e2b5bb729031 199 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 10 191 2.3E-66 T 14-09-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS16375 912eb07fd3df33a11523e2b5bb729031 199 PANTHER PTHR18895 5 194 4.7E-51 T 14-09-2016 PAJ_RS16375 912eb07fd3df33a11523e2b5bb729031 199 Gene3D G3DSA:3.40.50.150 6 195 1.0E-69 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS16375 912eb07fd3df33a11523e2b5bb729031 199 PANTHER PTHR18895:SF60 5 194 4.7E-51 T 14-09-2016 PAJ_RS16375 912eb07fd3df33a11523e2b5bb729031 199 Pfam PF03602 Conserved hypothetical protein 95 14 190 1.7E-61 T 14-09-2016 PAJ_RS16375 912eb07fd3df33a11523e2b5bb729031 199 SUPERFAMILY SSF53335 13 191 2.69E-52 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS20465 c2d4642db51b1906e0d2666324065639 389 PANTHER PTHR11712 1 388 6.6E-54 T 14-09-2016 PAJ_RS20465 c2d4642db51b1906e0d2666324065639 389 PANTHER PTHR11712:SF277 1 388 6.6E-54 T 14-09-2016 PAJ_RS20465 c2d4642db51b1906e0d2666324065639 389 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 147 163 - T 14-09-2016 IPR018201 Beta-ketoacyl synthase, active site PAJ_RS20465 c2d4642db51b1906e0d2666324065639 389 SUPERFAMILY SSF53901 203 387 4.03E-45 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS20465 c2d4642db51b1906e0d2666324065639 389 Gene3D G3DSA:3.40.47.10 57 229 1.5E-30 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS20465 c2d4642db51b1906e0d2666324065639 389 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 236 336 4.6E-27 T 14-09-2016 IPR014031 Beta-ketoacyl synthase, C-terminal PAJ_RS20465 c2d4642db51b1906e0d2666324065639 389 Gene3D G3DSA:3.40.47.10 241 387 2.8E-46 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS20465 c2d4642db51b1906e0d2666324065639 389 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 86 229 4.0E-21 T 14-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal PAJ_RS20465 c2d4642db51b1906e0d2666324065639 389 SUPERFAMILY SSF53901 2 230 1.93E-36 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS20465 c2d4642db51b1906e0d2666324065639 389 SMART SM00825 Beta-ketoacyl synthase 2 388 2.4E-8 T 14-09-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 SUPERFAMILY SSF53383 17 440 1.06E-94 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 SUPERFAMILY SSF53383 929 951 4.43E-96 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 SUPERFAMILY SSF53383 477 889 4.43E-96 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 PANTHER PTHR11773:SF1 1 957 0.0 T 14-09-2016 PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 950 0.0 T 14-09-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 PANTHER PTHR11773 1 957 0.0 T 14-09-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 956 25.32 T 14-09-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 Gene3D G3DSA:3.40.640.10 504 778 4.1E-39 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 Gene3D G3DSA:3.40.640.10 92 305 1.4E-12 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 Pfam PF02347 Glycine cleavage system P-protein 452 739 3.6E-9 T 14-09-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PAJ_RS13310 8a097a3f491cc53e29091d6117f73290 957 Pfam PF02347 Glycine cleavage system P-protein 16 440 2.0E-180 T 14-09-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 1.7E-73 T 14-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 PANTHER PTHR11070 4 718 1.8E-255 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 Gene3D G3DSA:3.40.50.300 286 387 6.6E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 Gene3D G3DSA:3.40.50.300 552 642 6.6E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 SUPERFAMILY SSF52540 5 642 4.76E-180 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 Gene3D G3DSA:3.40.50.300 191 285 8.8E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 Gene3D G3DSA:3.40.50.300 4 110 8.8E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 Gene3D G3DSA:1.10.10.160 114 190 2.4E-24 T 14-09-2016 IPR013986 DExx box DNA helicase domain PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 718 0.0 T 14-09-2016 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 PANTHER PTHR11070:SF7 4 718 1.8E-255 T 14-09-2016 PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 4.2E-76 T 14-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 PAJ_RS18410 585787c90145696ecbacc64b5d301ab1 720 Gene3D G3DSA:1.10.486.10 388 541 4.7E-50 T 14-09-2016 PAJ_RS02365 5065a647cb8d736eb62b366c1dc08357 284 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 6 264 1.7E-52 T 14-09-2016 IPR000150 Cof protein GO:0016787 PAJ_RS02365 5065a647cb8d736eb62b366c1dc08357 284 SUPERFAMILY SSF56784 2 268 5.11E-60 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS02365 5065a647cb8d736eb62b366c1dc08357 284 PANTHER PTHR10000 3 270 4.6E-93 T 14-09-2016 PAJ_RS02365 5065a647cb8d736eb62b366c1dc08357 284 PANTHER PTHR10000:SF27 3 270 4.6E-93 T 14-09-2016 PAJ_RS02365 5065a647cb8d736eb62b366c1dc08357 284 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 237 1.2E-19 T 14-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 PAJ_RS02365 5065a647cb8d736eb62b366c1dc08357 284 Gene3D G3DSA:3.30.1240.10 85 183 5.4E-25 T 14-09-2016 PAJ_RS02365 5065a647cb8d736eb62b366c1dc08357 284 Pfam PF08282 haloacid dehalogenase-like hydrolase 7 264 3.5E-53 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS02365 5065a647cb8d736eb62b366c1dc08357 284 Gene3D G3DSA:3.40.50.1000 1 75 1.1E-45 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS02365 5065a647cb8d736eb62b366c1dc08357 284 Gene3D G3DSA:3.40.50.1000 184 269 1.1E-45 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS01310 7497bbbbfba300008c41f5f6b28cfad2 70 PANTHER PTHR11544 1 70 5.3E-42 T 14-09-2016 PAJ_RS01310 7497bbbbfba300008c41f5f6b28cfad2 70 PIRSF PIRSF002599 1 70 2.9E-26 T 14-09-2016 IPR012156 Cold shock, CspA GO:0003676 PAJ_RS01310 7497bbbbfba300008c41f5f6b28cfad2 70 SMART SM00357 6 70 1.8E-31 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 PAJ_RS01310 7497bbbbfba300008c41f5f6b28cfad2 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 69 2.6E-33 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS01310 7497bbbbfba300008c41f5f6b28cfad2 70 PRINTS PR00050 Cold shock protein signature 7 22 3.8E-19 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS01310 7497bbbbfba300008c41f5f6b28cfad2 70 PRINTS PR00050 Cold shock protein signature 43 61 3.8E-19 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS01310 7497bbbbfba300008c41f5f6b28cfad2 70 PRINTS PR00050 Cold shock protein signature 28 37 3.8E-19 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS01310 7497bbbbfba300008c41f5f6b28cfad2 70 Gene3D G3DSA:2.40.50.140 5 68 2.8E-31 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS01310 7497bbbbfba300008c41f5f6b28cfad2 70 SUPERFAMILY SSF50249 3 68 1.84E-25 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS01310 7497bbbbfba300008c41f5f6b28cfad2 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 14-09-2016 IPR019844 Cold-shock conserved site PAJ_RS18005 11d1c004722da98d9c6ae46508cd4413 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 182 1.2E-22 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18005 11d1c004722da98d9c6ae46508cd4413 220 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 68 182 5.2E-13 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS18005 11d1c004722da98d9c6ae46508cd4413 220 SUPERFAMILY SSF56784 4 211 1.54E-45 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18005 11d1c004722da98d9c6ae46508cd4413 220 Gene3D G3DSA:3.40.50.1000 87 211 2.0E-33 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18005 11d1c004722da98d9c6ae46508cd4413 220 Gene3D G3DSA:3.40.50.1000 3 18 2.0E-33 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18005 11d1c004722da98d9c6ae46508cd4413 220 PANTHER PTHR18901:SF2 4 219 6.1E-52 T 14-09-2016 PAJ_RS18005 11d1c004722da98d9c6ae46508cd4413 220 Gene3D G3DSA:1.10.150.240 19 70 5.1E-5 T 14-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PAJ_RS18005 11d1c004722da98d9c6ae46508cd4413 220 PANTHER PTHR18901 4 219 6.1E-52 T 14-09-2016 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Gene3D G3DSA:3.30.56.10 1 38 6.5E-28 T 14-09-2016 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Gene3D G3DSA:3.30.56.10 155 183 6.5E-28 T 14-09-2016 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Gene3D G3DSA:3.50.40.10 197 392 2.7E-85 T 14-09-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 SMART SM00874 403 471 4.9E-32 T 14-09-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Gene3D G3DSA:2.40.50.140 42 154 1.4E-45 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 SUPERFAMILY SSF55681 467 689 8.45E-54 T 14-09-2016 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 PANTHER PTHR10947:SF0 2 794 0.0 T 14-09-2016 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 1.5E-291 T 14-09-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Pfam PF01588 Putative tRNA binding domain 45 145 6.5E-27 T 14-09-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 48.471 T 14-09-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Gene3D G3DSA:3.30.56.20 402 475 4.5E-27 T 14-09-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 SUPERFAMILY SSF46955 403 475 8.06E-21 T 14-09-2016 IPR009061 Putative DNA-binding domain PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 SUPERFAMILY SSF56037 195 392 2.56E-77 T 14-09-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 SUPERFAMILY SSF50249 35 195 1.4E-50 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 SUPERFAMILY SSF54991 697 794 7.45E-31 T 14-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Gene3D G3DSA:3.30.70.380 703 794 2.9E-31 T 14-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Pfam PF03483 B3/4 domain 212 385 9.5E-71 T 14-09-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 SMART SM00896 701 794 1.9E-45 T 14-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 3.4E-28 T 14-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Pfam PF03484 tRNA synthetase B5 domain 405 471 8.8E-20 T 14-09-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 Gene3D G3DSA:3.30.930.10 492 690 1.3E-64 T 14-09-2016 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 PANTHER PTHR10947 2 794 0.0 T 14-09-2016 PAJ_RS05785 fb21891b467f81e1107b4ebc5ff5d4b3 795 SMART SM00873 212 385 1.8E-98 T 14-09-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 Gene3D G3DSA:1.10.10.60 398 469 1.9E-24 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 SMART SM00382 160 311 2.1E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 SMART SM00448 4 115 1.0E-36 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 Pfam PF00072 Response regulator receiver domain 6 115 7.9E-31 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 466 2.9E-245 T 14-09-2016 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 PANTHER PTHR32071:SF15 6 469 2.8E-257 T 14-09-2016 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 Pfam PF00158 Sigma-54 interaction domain 140 306 7.2E-70 T 14-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 SUPERFAMILY SSF52172 6 185 2.99E-46 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 Pfam PF02954 Bacterial regulatory protein, Fis family 427 466 1.6E-15 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 SUPERFAMILY SSF52540 139 383 2.58E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 Gene3D G3DSA:1.10.8.60 313 392 3.9E-23 T 14-09-2016 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 Gene3D G3DSA:3.40.50.2300 6 134 1.1E-37 T 14-09-2016 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 449 8.0E-11 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 469 8.0E-11 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 PANTHER PTHR32071 6 469 2.8E-257 T 14-09-2016 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 14-09-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 14-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 SUPERFAMILY SSF46689 380 469 2.94E-25 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS17460 a20800f6cf9c58f8e2ea8363897134fa 469 Gene3D G3DSA:3.40.50.300 138 312 3.0E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16040 c81dc6760c3d751dddb0fc4077d4690c 427 Gene3D G3DSA:3.20.20.140 66 366 9.4E-125 T 14-09-2016 PAJ_RS16040 c81dc6760c3d751dddb0fc4077d4690c 427 Gene3D G3DSA:2.30.40.10 22 65 1.7E-4 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS16040 c81dc6760c3d751dddb0fc4077d4690c 427 Pfam PF07969 Amidohydrolase family 48 405 9.1E-54 T 14-09-2016 IPR013108 Amidohydrolase 3 PAJ_RS16040 c81dc6760c3d751dddb0fc4077d4690c 427 PANTHER PTHR32027:SF0 9 427 2.0E-177 T 14-09-2016 PAJ_RS16040 c81dc6760c3d751dddb0fc4077d4690c 427 SUPERFAMILY SSF51556 57 375 4.24E-103 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS16040 c81dc6760c3d751dddb0fc4077d4690c 427 PANTHER PTHR32027 9 427 2.0E-177 T 14-09-2016 PAJ_RS14700 8dcf34c89a96411551cb3f1299c07d29 170 PANTHER PTHR35861 1 170 1.3E-51 T 14-09-2016 PAJ_RS14700 8dcf34c89a96411551cb3f1299c07d29 170 Pfam PF04985 Phage tail tube protein FII 4 168 2.0E-61 T 14-09-2016 IPR006498 Tail tube protein PAJ_RS14700 8dcf34c89a96411551cb3f1299c07d29 170 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 3 169 1.9E-46 T 14-09-2016 IPR006498 Tail tube protein PAJ_RS14700 8dcf34c89a96411551cb3f1299c07d29 170 PANTHER PTHR35861:SF2 1 170 1.3E-51 T 14-09-2016 PAJ_RS04360 f8eae1104e01a512b852abb5e2250d09 349 Pfam PF12368 Rhodanase C-terminal 245 308 2.9E-19 T 14-09-2016 IPR022111 Rhodanase, C-terminal PAJ_RS04360 f8eae1104e01a512b852abb5e2250d09 349 Hamap MF_00469 UPF0176 protein YceA [yceA]. 22 277 39.06 T 14-09-2016 IPR020936 Uncharacterised protein family UPF0176 PAJ_RS04360 f8eae1104e01a512b852abb5e2250d09 349 SMART SM00450 136 237 8.8E-25 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS04360 f8eae1104e01a512b852abb5e2250d09 349 SUPERFAMILY SSF52821 117 271 1.92E-30 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS04360 f8eae1104e01a512b852abb5e2250d09 349 PANTHER PTHR22778:SF21 1 322 6.2E-114 T 14-09-2016 PAJ_RS04360 f8eae1104e01a512b852abb5e2250d09 349 Pfam PF00581 Rhodanese-like domain 138 232 5.4E-12 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS04360 f8eae1104e01a512b852abb5e2250d09 349 PANTHER PTHR22778 1 322 6.2E-114 T 14-09-2016 PAJ_RS04360 f8eae1104e01a512b852abb5e2250d09 349 Gene3D G3DSA:3.40.250.10 117 250 5.6E-37 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS09255 f8931a03787a2e24797978aa6e7cc7d1 133 Pfam PF07007 Protein of unknown function (DUF1311) 26 127 7.5E-15 T 14-09-2016 IPR009739 Protein of unknown function DUF1311 PAJ_RS07790 1d208417a752f829de6473d1f9d654d8 302 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 24 73 2.3E-13 T 14-09-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PAJ_RS07790 1d208417a752f829de6473d1f9d654d8 302 Gene3D G3DSA:1.10.3720.10 102 299 6.0E-24 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07790 1d208417a752f829de6473d1f9d654d8 302 SUPERFAMILY SSF161098 100 283 1.31E-24 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07790 1d208417a752f829de6473d1f9d654d8 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 300 1.0E-28 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07790 1d208417a752f829de6473d1f9d654d8 302 PANTHER PTHR30465:SF9 17 302 8.3E-141 T 14-09-2016 PAJ_RS07790 1d208417a752f829de6473d1f9d654d8 302 PANTHER PTHR30465 17 302 8.3E-141 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 Pfam PF00873 AcrB/AcrD/AcrF family 3 1031 0.0 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 Gene3D G3DSA:1.10.3850.10 819 1032 2.9E-54 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 SUPERFAMILY SSF82866 298 499 1.44E-50 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 Gene3D G3DSA:1.20.1640.10 293 505 6.5E-61 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 SUPERFAMILY SSF82693 39 133 5.76E-25 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 SUPERFAMILY SSF82693 673 722 3.14E-24 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 SUPERFAMILY SSF82693 813 861 3.14E-24 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 Gene3D G3DSA:3.30.70.1430 568 672 5.1E-35 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 SUPERFAMILY SSF82714 184 273 3.14E-22 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 SUPERFAMILY SSF82714 723 814 1.83E-20 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 5.0E-107 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 5.0E-107 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 5.0E-107 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 5.0E-107 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 5.0E-107 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 5.0E-107 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 5.0E-107 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 5.0E-107 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 5.0E-107 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 SUPERFAMILY SSF82693 566 672 2.82E-29 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 SUPERFAMILY SSF82866 844 1031 5.49E-43 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 Gene3D G3DSA:3.30.2090.10 183 277 7.1E-30 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 SUPERFAMILY SSF82693 137 184 3.4E-22 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 SUPERFAMILY SSF82693 276 332 3.4E-22 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PANTHER PTHR32063:SF13 1 1034 0.0 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1046 0.0 T 14-09-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 Gene3D G3DSA:3.30.70.1430 39 142 1.2E-33 T 14-09-2016 PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 Gene3D G3DSA:3.30.2090.10 723 814 1.6E-25 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS04795 061234cf35a07345d580e629ebcb17da 1053 PANTHER PTHR32063 1 1034 0.0 T 14-09-2016 PAJ_RS13745 59b369f6b0ae8bf77132d9a9ae9ab9f8 154 PANTHER PTHR33204 1 137 7.5E-59 T 14-09-2016 PAJ_RS13745 59b369f6b0ae8bf77132d9a9ae9ab9f8 154 SUPERFAMILY SSF46785 8 143 1.9E-34 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13745 59b369f6b0ae8bf77132d9a9ae9ab9f8 154 Pfam PF01638 HxlR-like helix-turn-helix 21 106 1.7E-19 T 14-09-2016 IPR002577 Helix-turn-helix, HxlR type PAJ_RS13745 59b369f6b0ae8bf77132d9a9ae9ab9f8 154 PANTHER PTHR33204:SF3 1 137 7.5E-59 T 14-09-2016 PAJ_RS13745 59b369f6b0ae8bf77132d9a9ae9ab9f8 154 Gene3D G3DSA:1.10.10.10 2 110 4.7E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02710 295a31c50d411e469ea688945a8efaf8 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 84 97 - T 14-09-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 PAJ_RS02710 295a31c50d411e469ea688945a8efaf8 129 PANTHER PTHR10978 3 129 3.6E-74 T 14-09-2016 PAJ_RS02710 295a31c50d411e469ea688945a8efaf8 129 SUPERFAMILY SSF81343 3 129 7.52E-34 T 14-09-2016 PAJ_RS02710 295a31c50d411e469ea688945a8efaf8 129 Gene3D G3DSA:1.20.1300.10 3 129 4.2E-42 T 14-09-2016 PAJ_RS02710 295a31c50d411e469ea688945a8efaf8 129 PANTHER PTHR10978:SF4 3 129 3.6E-74 T 14-09-2016 PAJ_RS02710 295a31c50d411e469ea688945a8efaf8 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 123 8.0E-31 T 14-09-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 PAJ_RS02710 295a31c50d411e469ea688945a8efaf8 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 126 3.6E-39 T 14-09-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 PAJ_RS02710 295a31c50d411e469ea688945a8efaf8 129 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 9 33 - T 14-09-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 PAJ_RS02710 295a31c50d411e469ea688945a8efaf8 129 PIRSF PIRSF000178 2 129 6.3E-31 T 14-09-2016 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 PANTHER PTHR11564:SF7 1 435 5.9E-277 T 14-09-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 SMART SM00963 1 86 2.5E-36 T 14-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 SMART SM00962 100 296 1.6E-116 T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 Gene3D G3DSA:1.10.260.30 329 432 3.5E-42 T 14-09-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 SMART SM00382 99 247 2.7E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 SUPERFAMILY SSF47446 329 431 1.8E-39 T 14-09-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 4.8E-179 T 14-09-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 SUPERFAMILY SSF52540 42 354 6.9E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 Pfam PF02978 Signal peptide binding domain 329 427 4.4E-34 T 14-09-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 PANTHER PTHR11564 1 435 5.9E-277 T 14-09-2016 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 Gene3D G3DSA:1.20.120.140 2 89 2.6E-35 T 14-09-2016 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 Gene3D G3DSA:3.40.50.300 95 297 4.8E-78 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.8E-22 T 14-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 1.9E-75 T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS12700 990fa268440d2a9b0a0a19f45017cb9c 453 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.801 T 14-09-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 PAJ_RS01690 a03a656ea5d1d02b9a4bb50675bbeead 308 PANTHER PTHR22888:SF13 1 268 6.8E-155 T 14-09-2016 PAJ_RS01690 a03a656ea5d1d02b9a4bb50675bbeead 308 SUPERFAMILY SSF49503 122 282 2.58E-52 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS01690 a03a656ea5d1d02b9a4bb50675bbeead 308 PIRSF PIRSF000292 1 308 2.9E-133 T 14-09-2016 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 PAJ_RS01690 a03a656ea5d1d02b9a4bb50675bbeead 308 SUPERFAMILY SSF81464 29 116 2.45E-23 T 14-09-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 PAJ_RS01690 a03a656ea5d1d02b9a4bb50675bbeead 308 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 147 219 7.4E-7 T 14-09-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 PAJ_RS01690 a03a656ea5d1d02b9a4bb50675bbeead 308 Gene3D G3DSA:1.10.287.90 29 113 3.4E-36 T 14-09-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 PAJ_RS01690 a03a656ea5d1d02b9a4bb50675bbeead 308 Gene3D G3DSA:2.60.40.420 123 280 7.6E-41 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS01690 a03a656ea5d1d02b9a4bb50675bbeead 308 Pfam PF06481 COX Aromatic Rich Motif 239 285 1.0E-17 T 14-09-2016 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 PAJ_RS01690 a03a656ea5d1d02b9a4bb50675bbeead 308 PANTHER PTHR22888 1 268 6.8E-155 T 14-09-2016 PAJ_RS01690 a03a656ea5d1d02b9a4bb50675bbeead 308 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 13 239 1.8E-120 T 14-09-2016 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 PAJ_RS03890 1b884a71d50b0b34263f537b077163dd 108 Gene3D G3DSA:3.30.1420.10 1 36 1.5E-11 T 14-09-2016 PAJ_RS03890 1b884a71d50b0b34263f537b077163dd 108 Gene3D G3DSA:1.10.10.370 38 108 2.7E-38 T 14-09-2016 PAJ_RS03890 1b884a71d50b0b34263f537b077163dd 108 PIRSF PIRSF006223 1 108 9.2E-48 T 14-09-2016 IPR007453 Sulphur transfer protein DsrC/TusE PAJ_RS03890 1b884a71d50b0b34263f537b077163dd 108 SUPERFAMILY SSF69721 2 108 5.23E-41 T 14-09-2016 IPR025526 DsrC-like domain PAJ_RS03890 1b884a71d50b0b34263f537b077163dd 108 Pfam PF04358 DsrC like protein 3 108 3.4E-46 T 14-09-2016 IPR007453 Sulphur transfer protein DsrC/TusE PAJ_RS03890 1b884a71d50b0b34263f537b077163dd 108 PANTHER PTHR37010 1 108 8.1E-58 T 14-09-2016 PAJ_RS03890 1b884a71d50b0b34263f537b077163dd 108 PANTHER PTHR37010:SF1 1 108 8.1E-58 T 14-09-2016 PAJ_RS03890 1b884a71d50b0b34263f537b077163dd 108 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 1 108 4.1E-51 T 14-09-2016 IPR007453 Sulphur transfer protein DsrC/TusE PAJ_RS13255 316bb2a56b00a28ac82ad8e027403cdd 579 SUPERFAMILY SSF64182 50 468 2.62E-119 T 14-09-2016 PAJ_RS13255 316bb2a56b00a28ac82ad8e027403cdd 579 PANTHER PTHR30255 3 577 2.0E-223 T 14-09-2016 PAJ_RS13255 316bb2a56b00a28ac82ad8e027403cdd 579 Pfam PF02272 DHHA1 domain 383 450 7.0E-15 T 14-09-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 PAJ_RS13255 316bb2a56b00a28ac82ad8e027403cdd 579 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 26 574 4.3E-161 T 14-09-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 PAJ_RS13255 316bb2a56b00a28ac82ad8e027403cdd 579 PANTHER PTHR30255:SF2 3 577 2.0E-223 T 14-09-2016 PAJ_RS13255 316bb2a56b00a28ac82ad8e027403cdd 579 Pfam PF01368 DHH family 76 207 2.1E-10 T 14-09-2016 IPR001667 DDH domain PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 22 347 1.6E-117 T 14-09-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 9 792 0.0 T 14-09-2016 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|UniPathway: UPA00138 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 483 788 1.9E-59 T 14-09-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 Gene3D G3DSA:3.30.1490.20 8 197 5.8E-68 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 416 427 - T 14-09-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 SUPERFAMILY SSF56059 7 385 1.65E-105 T 14-09-2016 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 Gene3D G3DSA:3.20.20.60 484 790 4.1E-103 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 PANTHER PTHR22931 2 271 0.0 T 14-09-2016 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 PANTHER PTHR22931 287 792 0.0 T 14-09-2016 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 SUPERFAMILY SSF52009 350 467 1.57E-34 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 Gene3D G3DSA:3.50.30.10 376 471 1.3E-36 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 Gene3D G3DSA:3.30.470.20 199 351 6.7E-59 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 696 714 - T 14-09-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 PANTHER PTHR22931:SF7 2 271 0.0 T 14-09-2016 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 PANTHER PTHR22931:SF7 287 792 0.0 T 14-09-2016 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 PIRSF PIRSF000854 4 794 0.0 T 14-09-2016 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|UniPathway: UPA00138 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 SUPERFAMILY SSF51621 466 791 2.02E-95 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS05835 7020db1e781247a08a25e7c8236c3e3c 794 Pfam PF00391 PEP-utilising enzyme, mobile domain 386 457 2.4E-27 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 PANTHER PTHR30046 358 571 3.0E-207 T 14-09-2016 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 Pfam PF08345 Flagellar M-ring protein C-terminal 256 447 2.5E-50 T 14-09-2016 IPR013556 Flagellar M-ring C-terminal PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 PANTHER PTHR30046:SF0 4 330 3.0E-207 T 14-09-2016 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 PANTHER PTHR30046 4 330 3.0E-207 T 14-09-2016 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 15 570 2.3E-179 T 14-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 PRINTS PR01009 Flagellar M-ring protein signature 157 171 1.5E-42 T 14-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 PRINTS PR01009 Flagellar M-ring protein signature 375 399 1.5E-42 T 14-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 PRINTS PR01009 Flagellar M-ring protein signature 125 143 1.5E-42 T 14-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 PRINTS PR01009 Flagellar M-ring protein signature 269 287 1.5E-42 T 14-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 PRINTS PR01009 Flagellar M-ring protein signature 200 218 1.5E-42 T 14-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 Pfam PF01514 Secretory protein of YscJ/FliF family 35 224 6.9E-78 T 14-09-2016 IPR006182 Secretory protein YscJ/FliF PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 PANTHER PTHR30046:SF0 358 571 3.0E-207 T 14-09-2016 PAJ_RS08875 ed5fec2c864edea6313a08fe2b753b5a 572 PIRSF PIRSF004862 1 572 5.7E-169 T 14-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 9 354 6.3E-79 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 Pfam PF07687 Peptidase dimerisation domain 166 264 6.3E-9 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 PIRSF PIRSF005962 4 367 2.9E-87 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 Gene3D G3DSA:3.30.70.360 167 273 9.6E-22 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 Pfam PF01546 Peptidase family M20/M25/M40 64 363 2.2E-18 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 SUPERFAMILY SSF53187 279 366 3.29E-59 T 14-09-2016 PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 SUPERFAMILY SSF53187 5 180 3.29E-59 T 14-09-2016 PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 PANTHER PTHR11014:SF118 11 366 3.4E-82 T 14-09-2016 PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 Gene3D G3DSA:3.40.630.10 276 366 9.5E-64 T 14-09-2016 PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 Gene3D G3DSA:3.40.630.10 8 161 9.5E-64 T 14-09-2016 PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 SUPERFAMILY SSF55031 167 275 1.09E-20 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS06755 90b8917a5abf0be89e386656545407ef 367 PANTHER PTHR11014 11 366 3.4E-82 T 14-09-2016 PAJ_RS04955 baa7496886fb1d089a2f06d3d4695805 506 Pfam PF00171 Aldehyde dehydrogenase family 32 493 1.6E-161 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS04955 baa7496886fb1d089a2f06d3d4695805 506 SUPERFAMILY SSF53720 13 497 1.07E-161 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS04955 baa7496886fb1d089a2f06d3d4695805 506 Gene3D G3DSA:3.40.605.10 17 269 7.8E-92 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS04955 baa7496886fb1d089a2f06d3d4695805 506 PANTHER PTHR11699 1 506 0.0 T 14-09-2016 PAJ_RS04955 baa7496886fb1d089a2f06d3d4695805 506 Gene3D G3DSA:3.40.309.10 270 469 3.3E-62 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS04955 baa7496886fb1d089a2f06d3d4695805 506 PANTHER PTHR11699:SF97 1 506 0.0 T 14-09-2016 PAJ_RS04955 baa7496886fb1d089a2f06d3d4695805 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS04955 baa7496886fb1d089a2f06d3d4695805 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 Pfam PF00691 OmpA family 115 210 5.4E-21 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 PANTHER PTHR30128 16 219 2.5E-71 T 14-09-2016 PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 SUPERFAMILY SSF103088 103 218 5.49E-38 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 Gene3D G3DSA:3.30.1330.60 95 216 3.7E-40 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 179 198 8.3E-6 T 14-09-2016 PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 199 219 8.3E-6 T 14-09-2016 PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 161 178 8.3E-6 T 14-09-2016 PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 ProSitePatterns PS01068 OmpA-like domain. 148 192 - T 14-09-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 PRINTS PR01021 OMPA domain signature 161 177 8.1E-14 T 14-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 PRINTS PR01021 OMPA domain signature 116 138 8.1E-14 T 14-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 PRINTS PR01021 OMPA domain signature 146 161 8.1E-14 T 14-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PAJ_RS17875 ee2c3a44335ca1336bce1c6eec8ec114 220 Pfam PF13488 Glycine zipper 37 85 7.9E-11 T 14-09-2016 PAJ_RS14270 f1784b84e9516dd912fa3e29e26c77fe 264 PANTHER PTHR24220:SF447 17 264 2.1E-119 T 14-09-2016 PAJ_RS14270 f1784b84e9516dd912fa3e29e26c77fe 264 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS14270 f1784b84e9516dd912fa3e29e26c77fe 264 SMART SM00382 40 237 9.9E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS14270 f1784b84e9516dd912fa3e29e26c77fe 264 Pfam PF00005 ABC transporter 31 189 1.1E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS14270 f1784b84e9516dd912fa3e29e26c77fe 264 PIRSF PIRSF039085 12 264 4.3E-104 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PAJ_RS14270 f1784b84e9516dd912fa3e29e26c77fe 264 PANTHER PTHR24220 17 264 2.1E-119 T 14-09-2016 PAJ_RS14270 f1784b84e9516dd912fa3e29e26c77fe 264 Gene3D G3DSA:3.40.50.300 16 260 2.3E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS14270 f1784b84e9516dd912fa3e29e26c77fe 264 SUPERFAMILY SSF52540 16 259 4.11E-74 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06725 7b13797bce82fefabb875691ea7d19dd 157 PANTHER PTHR10374 6 140 5.4E-14 T 14-09-2016 PAJ_RS06725 7b13797bce82fefabb875691ea7d19dd 157 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 20 140 1.4E-11 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PAJ_RS06725 7b13797bce82fefabb875691ea7d19dd 157 Gene3D G3DSA:3.10.180.10 19 143 8.6E-23 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS06725 7b13797bce82fefabb875691ea7d19dd 157 SUPERFAMILY SSF54593 19 145 1.14E-24 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PANTHER PTHR11922 1 189 2.0E-95 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PANTHER PTHR11922:SF7 1 189 2.0E-95 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 Gene3D G3DSA:3.40.50.880 2 190 1.3E-65 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PRINTS PR00097 Anthranilate synthase component II signature 168 181 1.1E-36 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.1E-36 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.1E-36 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.1E-36 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.1E-36 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.1E-36 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 190 2.6E-87 T 14-09-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 Pfam PF00117 Glutamine amidotransferase class-I 3 190 9.3E-54 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 8.8E-14 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 8.8E-14 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 8.8E-14 T 14-09-2016 PAJ_RS16020 bec9f38b7e90cdf10897502d62353d9b 191 SUPERFAMILY SSF52317 1 190 1.3E-52 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 SUPERFAMILY SSF51735 6 246 1.09E-88 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 2.2E-14 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.2E-14 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 2.2E-14 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PANTHER PTHR24321 2 246 4.2E-60 T 14-09-2016 PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 245 1.7E-75 T 14-09-2016 PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.3E-47 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.3E-47 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 5.3E-47 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 5.3E-47 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 5.3E-47 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 5.3E-47 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 183 0.0013 T 14-09-2016 PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 PANTHER PTHR24321:SF6 2 246 4.2E-60 T 14-09-2016 PAJ_RS06035 3138970cec64daa9271d526adabd6d69 254 Gene3D G3DSA:3.40.50.720 2 246 2.4E-92 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 Pfam PF01202 Shikimate kinase 13 170 2.6E-56 T 14-09-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 Gene3D G3DSA:3.40.50.300 2 172 3.6E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 PRINTS PR01100 Shikimate kinase family signature 31 44 4.7E-29 T 14-09-2016 PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 PRINTS PR01100 Shikimate kinase family signature 59 67 4.7E-29 T 14-09-2016 PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 PRINTS PR01100 Shikimate kinase family signature 98 115 4.7E-29 T 14-09-2016 PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 PRINTS PR01100 Shikimate kinase family signature 7 22 4.7E-29 T 14-09-2016 PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 PRINTS PR01100 Shikimate kinase family signature 77 86 4.7E-29 T 14-09-2016 PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 PANTHER PTHR21087 1 170 1.3E-72 T 14-09-2016 PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 29.268 T 14-09-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 14-09-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS16075 2a00ebd415a3d8e8b502e8eb7299fa46 173 SUPERFAMILY SSF52540 4 170 1.37E-34 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18300 715dc94c5017661f0a2e54ba7e791759 356 Gene3D G3DSA:3.40.50.720 1 192 7.0E-65 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18300 715dc94c5017661f0a2e54ba7e791759 356 PANTHER PTHR10366:SF41 3 355 1.9E-172 T 14-09-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 PAJ_RS18300 715dc94c5017661f0a2e54ba7e791759 356 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 342 7.6E-155 T 14-09-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 PAJ_RS18300 715dc94c5017661f0a2e54ba7e791759 356 Gene3D G3DSA:3.90.25.10 193 340 2.3E-52 T 14-09-2016 PAJ_RS18300 715dc94c5017661f0a2e54ba7e791759 356 SUPERFAMILY SSF51735 1 340 8.0E-94 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18300 715dc94c5017661f0a2e54ba7e791759 356 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 328 2.1E-98 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18300 715dc94c5017661f0a2e54ba7e791759 356 PANTHER PTHR10366 3 355 1.9E-172 T 14-09-2016 PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 SMART SM00283 226 427 1.2E-14 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 Gene3D G3DSA:1.10.287.950 249 423 3.8E-41 T 14-09-2016 PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 147 260 3.2E-12 T 14-09-2016 IPR000014 PAS domain PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 31 136 9.6E-12 T 14-09-2016 IPR000014 PAS domain PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 Pfam PF13426 PAS domain 154 253 1.2E-10 T 14-09-2016 IPR000014 PAS domain PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 SMART SM00086 212 254 0.0029 T 14-09-2016 IPR001610 PAC motif PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 SMART SM00086 92 134 0.003 T 14-09-2016 IPR001610 PAC motif PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 SUPERFAMILY SSF58104 228 424 1.03E-45 T 14-09-2016 PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 277 425 4.7E-33 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 SUPERFAMILY SSF55785 31 132 9.6E-23 T 14-09-2016 IPR000014 PAS domain PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 PANTHER PTHR24422 3 427 7.9E-142 T 14-09-2016 PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 Gene3D G3DSA:3.30.450.20 151 248 1.6E-18 T 14-09-2016 PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 Gene3D G3DSA:3.30.450.20 33 133 1.2E-21 T 14-09-2016 PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 SUPERFAMILY SSF55785 149 251 1.64E-19 T 14-09-2016 IPR000014 PAS domain PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 PANTHER PTHR24422:SF12 3 427 7.9E-142 T 14-09-2016 PAJ_RS13700 c40ca3f6891ca3de62a7d2b8f21eb5df 428 Pfam PF08447 PAS fold 42 128 1.5E-13 T 14-09-2016 IPR013655 PAS fold-3 GO:0005515 PAJ_RS20745 73305f47cf78744a2abceffc8e8ac9d9 325 Gene3D G3DSA:3.40.50.1000 175 302 1.1E-37 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS20745 73305f47cf78744a2abceffc8e8ac9d9 325 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 98 316 4.4E-89 T 14-09-2016 PAJ_RS20745 73305f47cf78744a2abceffc8e8ac9d9 325 Pfam PF00702 haloacid dehalogenase-like hydrolase 113 283 4.2E-16 T 14-09-2016 PAJ_RS20745 73305f47cf78744a2abceffc8e8ac9d9 325 Gene3D G3DSA:1.10.150.210 123 174 2.9E-27 T 14-09-2016 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 PAJ_RS20745 73305f47cf78744a2abceffc8e8ac9d9 325 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 113 283 8.1E-26 T 14-09-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 PAJ_RS20745 73305f47cf78744a2abceffc8e8ac9d9 325 PANTHER PTHR10000 1 322 4.8E-197 T 14-09-2016 PAJ_RS20745 73305f47cf78744a2abceffc8e8ac9d9 325 SUPERFAMILY SSF56784 112 316 2.67E-46 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS20745 73305f47cf78744a2abceffc8e8ac9d9 325 PANTHER PTHR10000:SF7 1 322 4.8E-197 T 14-09-2016 PAJ_RS15570 2f1fed5258f03b6215d080f8e3d5e2bd 150 PANTHER PTHR21272 2 146 4.5E-86 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS15570 2f1fed5258f03b6215d080f8e3d5e2bd 150 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 150 71.745 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS15570 2f1fed5258f03b6215d080f8e3d5e2bd 150 Gene3D G3DSA:3.40.50.9100 5 147 3.2E-66 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS15570 2f1fed5258f03b6215d080f8e3d5e2bd 150 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 21 150 4.0E-55 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS15570 2f1fed5258f03b6215d080f8e3d5e2bd 150 SUPERFAMILY SSF52304 6 148 2.35E-61 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS15570 2f1fed5258f03b6215d080f8e3d5e2bd 150 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 14-09-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS15570 2f1fed5258f03b6215d080f8e3d5e2bd 150 PIRSF PIRSF001399 3 149 4.6E-60 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS15570 2f1fed5258f03b6215d080f8e3d5e2bd 150 Pfam PF01220 Dehydroquinase class II 7 142 2.4E-58 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS15570 2f1fed5258f03b6215d080f8e3d5e2bd 150 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 145 3.8E-62 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS05695 f49cd1109135ca111b48e2a57d8cdbe2 296 PANTHER PTHR12715:SF7 7 295 1.5E-105 T 14-09-2016 PAJ_RS05695 f49cd1109135ca111b48e2a57d8cdbe2 296 PANTHER PTHR12715 7 295 1.5E-105 T 14-09-2016 PAJ_RS05695 f49cd1109135ca111b48e2a57d8cdbe2 296 Pfam PF00892 EamA-like transporter family 160 288 4.1E-12 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS05695 f49cd1109135ca111b48e2a57d8cdbe2 296 SUPERFAMILY SSF103481 47 141 6.02E-7 T 14-09-2016 PAJ_RS05695 f49cd1109135ca111b48e2a57d8cdbe2 296 SUPERFAMILY SSF103481 192 293 1.44E-8 T 14-09-2016 PAJ_RS05885 2647de63ee0c910561ab48b943a83a17 138 SUPERFAMILY SSF82649 5 136 3.51E-43 T 14-09-2016 PAJ_RS05885 2647de63ee0c910561ab48b943a83a17 138 PANTHER PTHR12735:SF26 1 138 6.5E-56 T 14-09-2016 PAJ_RS05885 2647de63ee0c910561ab48b943a83a17 138 PANTHER PTHR12735 1 138 6.5E-56 T 14-09-2016 PAJ_RS05885 2647de63ee0c910561ab48b943a83a17 138 Pfam PF02657 Fe-S metabolism associated domain 12 132 6.0E-42 T 14-09-2016 IPR003808 Fe-S metabolism associated domain, SufE-like UniPathway: UPA00266 PAJ_RS05885 2647de63ee0c910561ab48b943a83a17 138 Gene3D G3DSA:3.90.1010.10 2 137 1.3E-51 T 14-09-2016 PAJ_RS09285 bedf368f80caba21321c268a59d2fd87 237 Gene3D G3DSA:3.40.1730.10 6 230 2.2E-66 T 14-09-2016 PAJ_RS09285 bedf368f80caba21321c268a59d2fd87 237 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 8 142 3.1E-30 T 14-09-2016 IPR017748 Type VI secretion system-associated, BMAA0400 PAJ_RS09285 bedf368f80caba21321c268a59d2fd87 237 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 8 143 7.1E-44 T 14-09-2016 IPR017748 Type VI secretion system-associated, BMAA0400 PAJ_RS09285 bedf368f80caba21321c268a59d2fd87 237 PIRSF PIRSF029287 2 224 1.7E-48 T 14-09-2016 IPR017748 Type VI secretion system-associated, BMAA0400 PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 18 438 61.773 T 14-09-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 SUPERFAMILY SSF53335 76 437 6.46E-76 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 24 430 9.6E-136 T 14-09-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 Pfam PF01938 TRAM domain 13 67 1.8E-11 T 14-09-2016 IPR002792 TRAM domain PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 Gene3D G3DSA:3.40.50.150 255 436 3.3E-52 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 124 438 1.4E-26 T 14-09-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 420 430 - T 14-09-2016 IPR030391 RNA methyltransferase TrmA, conserved site PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 Gene3D G3DSA:2.40.50.140 2 87 1.6E-33 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 PANTHER PTHR11061 1 438 1.0E-112 T 14-09-2016 PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 SUPERFAMILY SSF50249 2 67 1.2E-15 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 369 399 - T 14-09-2016 IPR030390 RNA methyltransferase TrmA, active site PAJ_RS12995 aa4d821ec576184a496e1a94a578c196 439 PANTHER PTHR11061:SF30 1 438 1.0E-112 T 14-09-2016 PAJ_RS18500 b2b01ab79644a9a30b31d7deb96985b7 278 Gene3D G3DSA:3.40.50.1820 35 272 1.1E-70 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS18500 b2b01ab79644a9a30b31d7deb96985b7 278 Pfam PF01738 Dienelactone hydrolase family 50 272 4.6E-71 T 14-09-2016 IPR002925 Dienelactone hydrolase GO:0016787 PAJ_RS18500 b2b01ab79644a9a30b31d7deb96985b7 278 PANTHER PTHR17630 28 272 8.8E-110 T 14-09-2016 PAJ_RS18500 b2b01ab79644a9a30b31d7deb96985b7 278 PANTHER PTHR17630:SF42 28 272 8.8E-110 T 14-09-2016 PAJ_RS18500 b2b01ab79644a9a30b31d7deb96985b7 278 SUPERFAMILY SSF53474 40 272 2.95E-49 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 SUPERFAMILY SSF50993 1 407 3.14E-81 T 14-09-2016 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 Pfam PF00326 Prolyl oligopeptidase family 464 676 4.0E-65 T 14-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 PANTHER PTHR11757 4 684 0.0 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 14 404 3.7E-102 T 14-09-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 589 604 4.6E-48 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 447 465 4.6E-48 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 531 551 4.6E-48 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 607 629 4.6E-48 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 473 497 4.6E-48 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 501 520 4.6E-48 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 SUPERFAMILY SSF53474 415 656 1.75E-44 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 PANTHER PTHR11757:SF3 4 684 0.0 T 14-09-2016 PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 Gene3D G3DSA:3.40.50.1820 414 638 4.9E-36 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS08310 f25b522bd7357fd5592062cfb2b56d09 690 Gene3D G3DSA:2.130.10.120 74 407 1.5E-91 T 14-09-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 48 64 1.4E-53 T 14-09-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 26 42 1.4E-53 T 14-09-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 254 272 1.4E-53 T 14-09-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 277 290 1.4E-53 T 14-09-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 67 85 1.4E-53 T 14-09-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 88 98 1.4E-53 T 14-09-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 Gene3D G3DSA:3.40.50.2300 25 224 1.2E-64 T 14-09-2016 PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 Pfam PF13458 Periplasmic binding protein 25 353 1.1E-61 T 14-09-2016 IPR028081 Leucine-binding protein domain PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 SUPERFAMILY SSF53822 24 370 3.16E-86 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 PANTHER PTHR30483:SF16 1 364 4.8E-220 T 14-09-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PAJ_RS16340 d8ea9a7a15b97b8ccb54857d4c0f4a93 374 PANTHER PTHR30483 1 364 4.8E-220 T 14-09-2016 PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 1 191 6.0E-87 T 14-09-2016 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 Hamap MF_00463 Electron transport complex subunit RsxB [rsxB]. 4 185 43.441 T 14-09-2016 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 SUPERFAMILY SSF54862 37 176 2.79E-28 T 14-09-2016 PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 117 128 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 Pfam PF14697 4Fe-4S dicluster domain 110 164 3.6E-17 T 14-09-2016 PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 Gene3D G3DSA:3.30.70.20 111 178 1.5E-16 T 14-09-2016 PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 Pfam PF04060 Putative Fe-S cluster 44 76 1.2E-11 T 14-09-2016 IPR007202 4Fe-4S domain GO:0051536 PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 PIRSF PIRSF005784 3 190 4.2E-86 T 14-09-2016 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 PANTHER PTHR11938:SF64 1 189 1.6E-93 T 14-09-2016 PAJ_RS06220 f8852233b4c99fee49e236e619afbeb9 192 PANTHER PTHR11938 1 189 1.6E-93 T 14-09-2016 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 PANTHER PTHR30203:SF3 43 456 2.3E-89 T 14-09-2016 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 SUPERFAMILY SSF56954 2 455 1.24E-104 T 14-09-2016 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 Pfam PF02321 Outer membrane efflux protein 271 452 1.1E-17 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 Pfam PF02321 Outer membrane efflux protein 58 245 5.0E-30 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 10 454 1.6E-110 T 14-09-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 Gene3D G3DSA:1.20.1600.10 45 84 1.7E-95 T 14-09-2016 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 Gene3D G3DSA:1.20.1600.10 341 455 1.7E-95 T 14-09-2016 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 Gene3D G3DSA:1.20.1600.10 133 303 1.7E-95 T 14-09-2016 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 Gene3D G3DSA:2.20.200.10 94 132 1.6E-12 T 14-09-2016 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 Gene3D G3DSA:2.20.200.10 304 339 1.6E-12 T 14-09-2016 PAJ_RS04300 931bc5ea417d8b9e193017027fe0311b 459 PANTHER PTHR30203 43 456 2.3E-89 T 14-09-2016 PAJ_RS15795 3574d03f560ff2ea1d71e419743f7510 179 SUPERFAMILY SSF55282 4 179 6.12E-79 T 14-09-2016 IPR022803 Ribosomal protein L5 domain PAJ_RS15795 3574d03f560ff2ea1d71e419743f7510 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.747 T 14-09-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15795 3574d03f560ff2ea1d71e419743f7510 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 14-09-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15795 3574d03f560ff2ea1d71e419743f7510 179 PIRSF PIRSF002161 1 179 4.1E-66 T 14-09-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15795 3574d03f560ff2ea1d71e419743f7510 179 PANTHER PTHR11994 1 178 7.3E-104 T 14-09-2016 PAJ_RS15795 3574d03f560ff2ea1d71e419743f7510 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 8.2E-41 T 14-09-2016 IPR031309 Ribosomal protein L5, C-terminal PAJ_RS15795 3574d03f560ff2ea1d71e419743f7510 179 Pfam PF00281 Ribosomal protein L5 24 80 9.4E-29 T 14-09-2016 IPR031310 Ribosomal protein L5, N-terminal PAJ_RS15795 3574d03f560ff2ea1d71e419743f7510 179 Gene3D G3DSA:3.30.1440.10 2 179 1.9E-80 T 14-09-2016 IPR022803 Ribosomal protein L5 domain PAJ_RS08120 32d4365d30bf49d24c7b8953ea332e12 269 PIRSF PIRSF018249 1 269 2.2E-88 T 14-09-2016 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 PAJ_RS08120 32d4365d30bf49d24c7b8953ea332e12 269 PANTHER PTHR10108 16 221 1.3E-44 T 14-09-2016 PAJ_RS08120 32d4365d30bf49d24c7b8953ea332e12 269 Pfam PF13847 Methyltransferase domain 86 201 1.6E-15 T 14-09-2016 IPR025714 Methyltransferase domain PAJ_RS08120 32d4365d30bf49d24c7b8953ea332e12 269 SUPERFAMILY SSF53335 4 251 5.12E-48 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08120 32d4365d30bf49d24c7b8953ea332e12 269 PANTHER PTHR10108:SF886 16 221 1.3E-44 T 14-09-2016 PAJ_RS08120 32d4365d30bf49d24c7b8953ea332e12 269 Gene3D G3DSA:3.40.50.150 72 239 3.3E-23 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS09695 ea16b936cb0dd219aefaa995dbb08ed1 304 SUPERFAMILY SSF51735 1 154 1.12E-11 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09695 ea16b936cb0dd219aefaa995dbb08ed1 304 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 151 5.5E-37 T 14-09-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PAJ_RS09695 ea16b936cb0dd219aefaa995dbb08ed1 304 SUPERFAMILY SSF48179 177 301 3.13E-20 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS09695 ea16b936cb0dd219aefaa995dbb08ed1 304 Gene3D G3DSA:1.10.1040.10 185 301 7.6E-20 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS09695 ea16b936cb0dd219aefaa995dbb08ed1 304 Gene3D G3DSA:3.40.50.720 1 184 2.5E-50 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09695 ea16b936cb0dd219aefaa995dbb08ed1 304 PANTHER PTHR21708 1 304 2.8E-96 T 14-09-2016 PAJ_RS09695 ea16b936cb0dd219aefaa995dbb08ed1 304 PANTHER PTHR21708:SF26 1 304 2.8E-96 T 14-09-2016 PAJ_RS09695 ea16b936cb0dd219aefaa995dbb08ed1 304 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 177 293 1.4E-18 T 14-09-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PAJ_RS09695 ea16b936cb0dd219aefaa995dbb08ed1 304 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 303 4.2E-61 T 14-09-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PAJ_RS01705 b6a40799b5bfdc76d1f075a82d8be503 104 PIRSF PIRSF003113 1 99 2.7E-31 T 14-09-2016 IPR002634 BolA protein PAJ_RS01705 b6a40799b5bfdc76d1f075a82d8be503 104 Pfam PF01722 BolA-like protein 11 83 8.1E-29 T 14-09-2016 IPR002634 BolA protein PAJ_RS01705 b6a40799b5bfdc76d1f075a82d8be503 104 SUPERFAMILY SSF82657 1 88 1.27E-29 T 14-09-2016 IPR002634 BolA protein PAJ_RS01705 b6a40799b5bfdc76d1f075a82d8be503 104 PANTHER PTHR12735 1 103 7.0E-63 T 14-09-2016 PAJ_RS01705 b6a40799b5bfdc76d1f075a82d8be503 104 Gene3D G3DSA:3.30.300.90 1 100 4.8E-31 T 14-09-2016 IPR002634 BolA protein PAJ_RS01705 b6a40799b5bfdc76d1f075a82d8be503 104 PANTHER PTHR12735:SF23 1 103 7.0E-63 T 14-09-2016 PAJ_RS17275 0b8a710291c925d6296f4bef5177bc40 259 SUPERFAMILY SSF53448 5 143 7.13E-26 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS17275 0b8a710291c925d6296f4bef5177bc40 259 Gene3D G3DSA:3.90.550.10 7 115 3.8E-14 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS17275 0b8a710291c925d6296f4bef5177bc40 259 Gene3D G3DSA:3.90.550.10 162 224 3.8E-14 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS17275 0b8a710291c925d6296f4bef5177bc40 259 PANTHER PTHR10859 5 136 3.3E-29 T 14-09-2016 PAJ_RS17275 0b8a710291c925d6296f4bef5177bc40 259 Pfam PF00535 Glycosyl transferase family 2 9 137 1.2E-15 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 SMART SM00342 301 384 1.3E-28 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 Pfam PF13377 Periplasmic binding protein-like domain 113 277 1.8E-33 T 14-09-2016 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 Gene3D G3DSA:1.10.10.60 338 387 5.3E-16 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 SUPERFAMILY SSF53822 10 298 4.12E-43 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 Gene3D G3DSA:1.10.10.60 282 336 5.4E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 PANTHER PTHR30146:SF24 8 320 7.3E-166 T 14-09-2016 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 Pfam PF12833 Helix-turn-helix domain 309 385 3.0E-19 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 338 380 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 368 384 6.8E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 353 368 6.8E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 SUPERFAMILY SSF46689 338 386 4.48E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 PANTHER PTHR30146 8 320 7.3E-166 T 14-09-2016 PAJ_RS17735 b5ab3f7b7c2a9b7ff060ab8730f0d2ae 391 Gene3D G3DSA:3.40.50.2300 96 277 7.1E-26 T 14-09-2016 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 Gene3D G3DSA:3.90.190.20 326 477 2.0E-55 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 Gene3D G3DSA:3.40.50.720 20 107 2.6E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 Pfam PF01225 Mur ligase family, catalytic domain 21 118 7.3E-30 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 Gene3D G3DSA:3.40.1190.10 108 325 7.4E-84 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 PANTHER PTHR23135 14 469 1.2E-225 T 14-09-2016 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 21 475 8.6E-182 T 14-09-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 PANTHER PTHR23135:SF5 14 469 1.2E-225 T 14-09-2016 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 SUPERFAMILY SSF51984 20 106 6.93E-29 T 14-09-2016 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 19 481 43.068 T 14-09-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 Pfam PF02875 Mur ligase family, glutamate ligase domain 327 418 6.3E-20 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 SUPERFAMILY SSF53623 105 322 7.72E-73 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 SUPERFAMILY SSF53244 323 477 1.83E-46 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00330 dc98cc482c371cb64252ba4a1531fb59 491 Pfam PF08245 Mur ligase middle domain 124 304 2.2E-27 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 SUPERFAMILY SSF55785 151 255 2.44E-21 T 14-09-2016 IPR000014 PAS domain PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 SMART SM00086 92 134 1.8 T 14-09-2016 IPR001610 PAC motif PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 SMART SM00086 212 254 6.6E-4 T 14-09-2016 IPR001610 PAC motif PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 SMART SM00283 236 427 2.3E-9 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 29 137 1.4E-10 T 14-09-2016 IPR000014 PAS domain PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 147 258 1.1E-16 T 14-09-2016 IPR000014 PAS domain PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 SUPERFAMILY SSF55785 28 132 8.72E-22 T 14-09-2016 IPR000014 PAS domain PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 286 425 6.0E-34 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 Pfam PF13426 PAS domain 154 253 1.0E-12 T 14-09-2016 IPR000014 PAS domain PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 Pfam PF13426 PAS domain 36 132 5.0E-12 T 14-09-2016 IPR000014 PAS domain PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 SUPERFAMILY SSF58104 228 424 7.59E-46 T 14-09-2016 PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 PANTHER PTHR24422:SF12 1 427 2.8E-142 T 14-09-2016 PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 Gene3D G3DSA:1.10.287.950 248 423 1.2E-42 T 14-09-2016 PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 PANTHER PTHR24422 1 427 2.8E-142 T 14-09-2016 PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 SMART SM00091 139 207 1.1 T 14-09-2016 IPR000014 PAS domain PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 SMART SM00091 19 90 10.0 T 14-09-2016 IPR000014 PAS domain PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 Gene3D G3DSA:3.30.450.20 151 247 4.4E-20 T 14-09-2016 PAJ_RS13710 22527dd7b5029d89b598a81d3368aa14 428 Gene3D G3DSA:3.30.450.20 29 132 9.5E-20 T 14-09-2016 PAJ_RS15670 6bace7bd5ebfe9b204e3f2125760a9f3 190 PANTHER PTHR17490:SF8 9 185 1.5E-102 T 14-09-2016 PAJ_RS15670 6bace7bd5ebfe9b204e3f2125760a9f3 190 Pfam PF01300 Telomere recombination 17 188 2.7E-42 T 14-09-2016 IPR006070 YrdC-like domain GO:0003725 PAJ_RS15670 6bace7bd5ebfe9b204e3f2125760a9f3 190 Gene3D G3DSA:3.90.870.10 4 190 4.5E-55 T 14-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PAJ_RS15670 6bace7bd5ebfe9b204e3f2125760a9f3 190 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 7 188 40.806 T 14-09-2016 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 PAJ_RS15670 6bace7bd5ebfe9b204e3f2125760a9f3 190 PANTHER PTHR17490 9 185 1.5E-102 T 14-09-2016 PAJ_RS15670 6bace7bd5ebfe9b204e3f2125760a9f3 190 SUPERFAMILY SSF55821 6 186 7.63E-57 T 14-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PAJ_RS01995 a6e1f9914c5373359f15d2f38e33d61f 169 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 10 164 5.3E-65 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PAJ_RS01995 a6e1f9914c5373359f15d2f38e33d61f 169 Gene3D G3DSA:3.40.50.7700 6 165 3.2E-74 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PAJ_RS01995 a6e1f9914c5373359f15d2f38e33d61f 169 PANTHER PTHR23046:SF2 8 168 1.6E-87 T 14-09-2016 PAJ_RS01995 a6e1f9914c5373359f15d2f38e33d61f 169 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 10 163 32.169 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PAJ_RS01995 a6e1f9914c5373359f15d2f38e33d61f 169 PANTHER PTHR23046 8 168 1.6E-87 T 14-09-2016 PAJ_RS01995 a6e1f9914c5373359f15d2f38e33d61f 169 SMART SM01001 8 159 7.7E-101 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PAJ_RS01995 a6e1f9914c5373359f15d2f38e33d61f 169 Pfam PF00731 AIR carboxylase 10 157 3.1E-63 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PAJ_RS01995 a6e1f9914c5373359f15d2f38e33d61f 169 SUPERFAMILY SSF52255 7 167 4.45E-66 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PAJ_RS01995 a6e1f9914c5373359f15d2f38e33d61f 169 PIRSF PIRSF001338 5 168 7.5E-66 T 14-09-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 1.7E-70 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 1.7E-70 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 1.7E-70 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 1.7E-70 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 1.7E-70 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 1.7E-70 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 1.7E-70 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 1.7E-70 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 1.7E-70 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 Gene3D G3DSA:3.30.390.30 342 459 1.8E-43 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PANTHER PTHR22912:SF160 1 459 3.3E-273 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 SUPERFAMILY SSF51905 7 381 2.59E-58 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 Gene3D G3DSA:3.50.50.60 151 257 2.4E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 1.8E-41 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.8E-41 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 1.8E-41 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 1.8E-41 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 1.8E-41 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PIRSF PIRSF000350 1 469 9.8E-89 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 14-09-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 Gene3D G3DSA:3.50.50.60 6 149 9.9E-40 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 PANTHER PTHR22912 1 459 3.3E-273 T 14-09-2016 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 SUPERFAMILY SSF55424 343 466 1.17E-38 T 14-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 7 458 1.9E-151 T 14-09-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 Gene3D G3DSA:3.50.50.60 258 340 1.5E-27 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 2.6E-35 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PAJ_RS00455 4a91bfbd29dc85ab838e54558ccc6871 474 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 328 1.5E-64 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 Pfam PF04545 Sigma-70, region 4 229 280 3.0E-16 T 14-09-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 285 54.813 T 14-09-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 280 6.5E-35 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 PIRSF PIRSF000770 9 285 1.3E-34 T 14-09-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 SUPERFAMILY SSF88659 200 284 1.18E-18 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 14 284 1.8E-129 T 14-09-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 253 279 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 Pfam PF04542 Sigma-70 region 2 53 122 8.8E-17 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 Gene3D G3DSA:1.10.10.10 224 282 7.9E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 PRINTS PR00046 Major sigma-70 factor signature 77 90 7.0E-19 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 PRINTS PR00046 Major sigma-70 factor signature 233 245 7.0E-19 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 PRINTS PR00046 Major sigma-70 factor signature 253 268 7.0E-19 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 PRINTS PR00046 Major sigma-70 factor signature 268 279 7.0E-19 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 PANTHER PTHR30376 2 284 6.7E-129 T 14-09-2016 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 Gene3D G3DSA:1.10.601.10 14 122 3.1E-34 T 14-09-2016 PAJ_RS16355 db72855c9c240a5daaea107cc31931ec 285 SUPERFAMILY SSF88946 15 122 4.19E-39 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12335 4c3c0dfa9a3b931a548aea456cc99b4c 301 PANTHER PTHR30537 1 292 1.2E-143 T 14-09-2016 PAJ_RS12335 4c3c0dfa9a3b931a548aea456cc99b4c 301 SUPERFAMILY SSF53850 92 296 6.98E-42 T 14-09-2016 PAJ_RS12335 4c3c0dfa9a3b931a548aea456cc99b4c 301 Gene3D G3DSA:1.10.10.10 2 82 2.7E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12335 4c3c0dfa9a3b931a548aea456cc99b4c 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 1.3E-20 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS12335 4c3c0dfa9a3b931a548aea456cc99b4c 301 SUPERFAMILY SSF46785 5 87 1.06E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12335 4c3c0dfa9a3b931a548aea456cc99b4c 301 Gene3D G3DSA:3.40.190.10 178 263 1.5E-22 T 14-09-2016 PAJ_RS12335 4c3c0dfa9a3b931a548aea456cc99b4c 301 Pfam PF03466 LysR substrate binding domain 89 294 9.9E-42 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS12335 4c3c0dfa9a3b931a548aea456cc99b4c 301 PANTHER PTHR30537:SF28 1 292 1.2E-143 T 14-09-2016 PAJ_RS12335 4c3c0dfa9a3b931a548aea456cc99b4c 301 Gene3D G3DSA:3.40.190.10 92 177 1.2E-4 T 14-09-2016 PAJ_RS10555 7073b2a9c7f4902b99433a1fa3e77bf1 552 PIRSF PIRSF006281 1 537 3.9E-194 T 14-09-2016 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D UniPathway: UPA00637 PAJ_RS10555 7073b2a9c7f4902b99433a1fa3e77bf1 552 SUPERFAMILY SSF81296 421 536 9.33E-27 T 14-09-2016 IPR014756 Immunoglobulin E-set PAJ_RS10555 7073b2a9c7f4902b99433a1fa3e77bf1 552 SUPERFAMILY SSF74650 44 420 1.91E-142 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS10555 7073b2a9c7f4902b99433a1fa3e77bf1 552 Gene3D G3DSA:2.70.98.10 43 421 1.0E-156 T 14-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PAJ_RS10555 7073b2a9c7f4902b99433a1fa3e77bf1 552 PANTHER PTHR30504 1 550 0.0 T 14-09-2016 PAJ_RS10555 7073b2a9c7f4902b99433a1fa3e77bf1 552 Gene3D G3DSA:2.60.40.10 422 544 4.3E-33 T 14-09-2016 IPR013783 Immunoglobulin-like fold PAJ_RS10555 7073b2a9c7f4902b99433a1fa3e77bf1 552 PANTHER PTHR30504:SF3 1 550 0.0 T 14-09-2016 PAJ_RS10555 7073b2a9c7f4902b99433a1fa3e77bf1 552 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 44 533 5.6E-179 T 14-09-2016 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 UniPathway: UPA00637 PAJ_RS13445 29af26f0b823266406202000c37edd53 202 Hamap MF_00746 Protein SprT [sprT]. 44 197 39.693 T 14-09-2016 IPR023483 Uncharacterised protein family SprT PAJ_RS13445 29af26f0b823266406202000c37edd53 202 PANTHER PTHR38773 34 194 2.0E-85 T 14-09-2016 PAJ_RS13445 29af26f0b823266406202000c37edd53 202 SMART SM00731 48 197 1.9E-55 T 14-09-2016 IPR006640 SprT-like PAJ_RS13445 29af26f0b823266406202000c37edd53 202 Pfam PF10263 SprT-like family 54 195 2.0E-28 T 14-09-2016 IPR006640 SprT-like PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 SMART SM00421 178 235 8.4E-19 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 ProSitePatterns PS00622 LuxR-type HTH domain signature. 195 222 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 Pfam PF00196 Bacterial regulatory proteins, luxR family 180 234 1.2E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 SUPERFAMILY SSF46894 178 241 1.97E-17 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 Pfam PF03472 Autoinducer binding domain 13 157 1.2E-28 T 14-09-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 SUPERFAMILY SSF75516 12 163 1.27E-35 T 14-09-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 211 1.3E-9 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 195 1.3E-9 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 211 223 1.3E-9 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 Gene3D G3DSA:3.30.450.80 7 183 1.1E-37 T 14-09-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PAJ_RS07140 9bb949550ea65f9f32e5fc67294ee999 249 Gene3D G3DSA:1.10.10.10 184 241 2.4E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18115 5dd802ef31c4e672bd823be0d0bedcb1 154 SUPERFAMILY SSF46785 17 148 8.79E-35 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18115 5dd802ef31c4e672bd823be0d0bedcb1 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 78 2.1E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS18115 5dd802ef31c4e672bd823be0d0bedcb1 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 98 114 2.1E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS18115 5dd802ef31c4e672bd823be0d0bedcb1 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 79 94 2.1E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS18115 5dd802ef31c4e672bd823be0d0bedcb1 154 Pfam PF01047 MarR family 45 103 1.2E-17 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS18115 5dd802ef31c4e672bd823be0d0bedcb1 154 Gene3D G3DSA:1.10.10.10 6 150 2.4E-45 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18115 5dd802ef31c4e672bd823be0d0bedcb1 154 PANTHER PTHR33164 15 150 4.1E-59 T 14-09-2016 PAJ_RS18115 5dd802ef31c4e672bd823be0d0bedcb1 154 SMART SM00347 38 136 2.9E-24 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS18115 5dd802ef31c4e672bd823be0d0bedcb1 154 PANTHER PTHR33164:SF5 15 150 4.1E-59 T 14-09-2016 PAJ_RS12245 e7bed01b8f6d087ab922f12b94235a7f 735 SUPERFAMILY SSF56935 58 735 9.16E-114 T 14-09-2016 PAJ_RS12245 e7bed01b8f6d087ab922f12b94235a7f 735 Gene3D G3DSA:2.40.170.20 190 735 1.4E-94 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS12245 e7bed01b8f6d087ab922f12b94235a7f 735 Gene3D G3DSA:2.170.130.10 53 189 2.2E-38 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS12245 e7bed01b8f6d087ab922f12b94235a7f 735 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 185 1.3E-26 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS12245 e7bed01b8f6d087ab922f12b94235a7f 735 Pfam PF00593 TonB dependent receptor 452 733 2.2E-31 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS12245 e7bed01b8f6d087ab922f12b94235a7f 735 PANTHER PTHR32552:SF15 504 735 3.6E-72 T 14-09-2016 PAJ_RS12245 e7bed01b8f6d087ab922f12b94235a7f 735 PANTHER PTHR32552:SF15 1 485 3.6E-72 T 14-09-2016 PAJ_RS12245 e7bed01b8f6d087ab922f12b94235a7f 735 PANTHER PTHR32552 504 735 3.6E-72 T 14-09-2016 PAJ_RS12245 e7bed01b8f6d087ab922f12b94235a7f 735 PANTHER PTHR32552 1 485 3.6E-72 T 14-09-2016 PAJ_RS02210 58b04551e3ce5124ce8ccd28b897f94f 449 PANTHER PTHR11328:SF24 8 438 2.6E-95 T 14-09-2016 PAJ_RS02210 58b04551e3ce5124ce8ccd28b897f94f 449 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 14 444 2.8E-95 T 14-09-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 PAJ_RS02210 58b04551e3ce5124ce8ccd28b897f94f 449 SUPERFAMILY SSF103473 15 415 1.09E-31 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS02210 58b04551e3ce5124ce8ccd28b897f94f 449 Gene3D G3DSA:1.20.1250.20 228 401 1.3E-9 T 14-09-2016 PAJ_RS02210 58b04551e3ce5124ce8ccd28b897f94f 449 Gene3D G3DSA:1.20.1250.20 24 203 7.9E-14 T 14-09-2016 PAJ_RS02210 58b04551e3ce5124ce8ccd28b897f94f 449 PANTHER PTHR11328 8 438 2.6E-95 T 14-09-2016 PAJ_RS02210 58b04551e3ce5124ce8ccd28b897f94f 449 Pfam PF13347 MFS/sugar transport protein 16 437 4.5E-82 T 14-09-2016 PAJ_RS03490 e02af8432a79d73998f9f5f0635b696f 249 PANTHER PTHR24220:SF495 11 248 8.4E-168 T 14-09-2016 PAJ_RS03490 e02af8432a79d73998f9f5f0635b696f 249 Gene3D G3DSA:3.40.50.300 9 242 2.2E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03490 e02af8432a79d73998f9f5f0635b696f 249 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03490 e02af8432a79d73998f9f5f0635b696f 249 PIRSF PIRSF039085 7 249 1.4E-85 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PAJ_RS03490 e02af8432a79d73998f9f5f0635b696f 249 SUPERFAMILY SSF52540 10 241 4.56E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03490 e02af8432a79d73998f9f5f0635b696f 249 Pfam PF00005 ABC transporter 27 177 7.3E-36 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03490 e02af8432a79d73998f9f5f0635b696f 249 SMART SM00382 34 225 9.6E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03490 e02af8432a79d73998f9f5f0635b696f 249 PANTHER PTHR24220 11 248 8.4E-168 T 14-09-2016 PAJ_RS01305 f51e4c2ba723bb69a80ded5e35a33e06 260 PANTHER PTHR10204 1 248 3.5E-108 T 14-09-2016 PAJ_RS01305 f51e4c2ba723bb69a80ded5e35a33e06 260 Pfam PF02525 Flavodoxin-like fold 1 212 8.9E-54 T 14-09-2016 IPR003680 Flavodoxin-like fold PAJ_RS01305 f51e4c2ba723bb69a80ded5e35a33e06 260 SUPERFAMILY SSF52218 1 243 5.1E-71 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS01305 f51e4c2ba723bb69a80ded5e35a33e06 260 PANTHER PTHR10204:SF46 1 248 3.5E-108 T 14-09-2016 PAJ_RS01305 f51e4c2ba723bb69a80ded5e35a33e06 260 Gene3D G3DSA:3.40.50.360 1 234 5.2E-73 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 SUPERFAMILY SSF55973 3 109 2.35E-47 T 14-09-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 SUPERFAMILY SSF55973 233 382 7.06E-72 T 14-09-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 Gene3D G3DSA:3.30.300.10 244 381 9.6E-73 T 14-09-2016 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 60.027 T 14-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 100 1.3E-42 T 14-09-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 380 6.4E-202 T 14-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 PANTHER PTHR11964 1 376 1.2E-291 T 14-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 4.2E-46 T 14-09-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 Gene3D G3DSA:3.30.300.10 136 233 1.6E-44 T 14-09-2016 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 Gene3D G3DSA:3.30.300.10 11 135 2.6E-50 T 14-09-2016 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 14-09-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 SUPERFAMILY SSF55973 111 232 3.77E-52 T 14-09-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 370 4.0E-70 T 14-09-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 14-09-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS13430 03fcb211ff204c1903151aa42ea13df9 383 PIRSF PIRSF000497 1 382 3.1E-177 T 14-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PAJ_RS05590 b4ed081cffbb2c011dd21c0d13af4da4 290 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 83 277 5.1E-72 T 14-09-2016 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 PAJ_RS05590 b4ed081cffbb2c011dd21c0d13af4da4 290 Gene3D G3DSA:1.10.3720.10 91 286 8.7E-27 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS05590 b4ed081cffbb2c011dd21c0d13af4da4 290 PANTHER PTHR30151:SF7 40 282 7.0E-89 T 14-09-2016 PAJ_RS05590 b4ed081cffbb2c011dd21c0d13af4da4 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 274 2.9E-20 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS05590 b4ed081cffbb2c011dd21c0d13af4da4 290 PANTHER PTHR30151 40 282 7.0E-89 T 14-09-2016 PAJ_RS05590 b4ed081cffbb2c011dd21c0d13af4da4 290 SUPERFAMILY SSF161098 93 276 3.4E-28 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 SMART SM00304 173 228 1.1E-10 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 PANTHER PTHR24423:SF564 61 84 1.0E-89 T 14-09-2016 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 PANTHER PTHR24423:SF564 167 448 1.0E-89 T 14-09-2016 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 SMART SM00387 338 448 5.0E-24 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 Pfam PF00672 HAMP domain 157 224 4.0E-15 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 SMART SM00388 229 292 2.4E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 445 3.5E-16 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 SUPERFAMILY SSF47384 213 292 4.51E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 230 291 1.2E-11 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 Gene3D G3DSA:1.10.287.130 219 288 8.8E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 PANTHER PTHR24423 61 84 1.0E-89 T 14-09-2016 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 SUPERFAMILY SSF158472 174 226 7.59E-8 T 14-09-2016 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 SUPERFAMILY SSF55874 282 448 6.29E-34 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 Gene3D G3DSA:3.30.565.10 300 446 3.5E-35 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 PANTHER PTHR24423 167 448 1.0E-89 T 14-09-2016 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 5.3E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 403 5.3E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 445 5.3E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS11340 a77539cb1ad0bbb237f6a9e51d5b8bc4 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 5.3E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS13555 bf807c919a433aae24286e9f771edb52 90 SUPERFAMILY SSF111148 1 89 4.84E-40 T 14-09-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 PAJ_RS13555 bf807c919a433aae24286e9f771edb52 90 Gene3D G3DSA:1.10.3880.10 1 89 2.2E-43 T 14-09-2016 PAJ_RS13555 bf807c919a433aae24286e9f771edb52 90 PIRSF PIRSF029827 1 90 1.3E-44 T 14-09-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 PAJ_RS13555 bf807c919a433aae24286e9f771edb52 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 3.0E-34 T 14-09-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 PAJ_RS13555 bf807c919a433aae24286e9f771edb52 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 28.275 T 14-09-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 PAJ_RS13555 bf807c919a433aae24286e9f771edb52 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.5E-40 T 14-09-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 PAJ_RS13555 bf807c919a433aae24286e9f771edb52 90 PANTHER PTHR36965:SF1 2 90 5.5E-55 T 14-09-2016 PAJ_RS13555 bf807c919a433aae24286e9f771edb52 90 PANTHER PTHR36965 2 90 5.5E-55 T 14-09-2016 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 SUPERFAMILY SSF46689 251 299 1.57E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 Gene3D G3DSA:1.10.10.60 200 251 5.9E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 SMART SM00342 215 298 2.9E-27 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 SUPERFAMILY SSF47454 137 194 1.91E-11 T 14-09-2016 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain GO:0003677|GO:0006355 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 252 294 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 SUPERFAMILY SSF46689 200 249 5.82E-5 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 PANTHER PTHR11019 142 306 1.6E-127 T 14-09-2016 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 PANTHER PTHR11019 33 123 1.6E-127 T 14-09-2016 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 Pfam PF12833 Helix-turn-helix domain 222 299 8.9E-19 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 Gene3D G3DSA:2.60.120.10 47 103 4.2E-6 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 SUPERFAMILY SSF51182 41 114 2.57E-6 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 PANTHER PTHR11019:SF136 33 123 1.6E-127 T 14-09-2016 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 PANTHER PTHR11019:SF136 142 306 1.6E-127 T 14-09-2016 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 267 282 1.5E-5 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 282 298 1.5E-5 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS13535 6ab2af3b429044fdcab911e13403659a 310 Gene3D G3DSA:1.10.10.60 252 302 1.0E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS07665 9561d665f750148886b0605d48cdd5fa 437 TIGRFAM TIGR00784 citMHS: citrate transporter 1 432 3.2E-173 T 14-09-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 PAJ_RS07665 9561d665f750148886b0605d48cdd5fa 437 Pfam PF03600 Citrate transporter 13 195 4.0E-29 T 14-09-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 PAJ_RS07665 9561d665f750148886b0605d48cdd5fa 437 Pfam PF03600 Citrate transporter 227 380 1.7E-23 T 14-09-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 PAJ_RS07665 9561d665f750148886b0605d48cdd5fa 437 PANTHER PTHR10283:SF87 2 21 2.0E-163 T 14-09-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 PAJ_RS07665 9561d665f750148886b0605d48cdd5fa 437 PANTHER PTHR10283 49 432 2.0E-163 T 14-09-2016 PAJ_RS07665 9561d665f750148886b0605d48cdd5fa 437 PANTHER PTHR10283 2 21 2.0E-163 T 14-09-2016 PAJ_RS07665 9561d665f750148886b0605d48cdd5fa 437 PANTHER PTHR10283:SF87 49 432 2.0E-163 T 14-09-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 PAJ_RS04060 36a3b94e3d75fd3140a4c6dab95477dd 280 Gene3D G3DSA:3.90.1530.10 22 88 7.5E-5 T 14-09-2016 PAJ_RS04060 36a3b94e3d75fd3140a4c6dab95477dd 280 SUPERFAMILY SSF110849 25 89 2.62E-5 T 14-09-2016 IPR003115 ParB/Sulfiredoxin PAJ_RS04060 36a3b94e3d75fd3140a4c6dab95477dd 280 SUPERFAMILY SSF109709 121 201 6.67E-14 T 14-09-2016 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 Gene3D G3DSA:3.40.50.620 3 237 4.6E-103 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 PANTHER PTHR11766 5 423 4.0E-220 T 14-09-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 423 46.016 T 14-09-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 Gene3D G3DSA:3.10.290.10 321 423 1.7E-30 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 SUPERFAMILY SSF55174 327 423 1.7E-20 T 14-09-2016 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 SUPERFAMILY SSF52374 4 328 4.42E-108 T 14-09-2016 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 Pfam PF01479 S4 domain 359 402 1.4E-5 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 SMART SM00363 357 419 4.6E-5 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 423 3.3E-142 T 14-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 5.3E-32 T 14-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 188 210 5.3E-32 T 14-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 221 233 5.3E-32 T 14-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 167 182 5.3E-32 T 14-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 Gene3D G3DSA:1.10.240.10 238 320 2.3E-42 T 14-09-2016 PAJ_RS06170 bbf246a864f13ee45f6dc3ad1dd57f02 424 Pfam PF00579 tRNA synthetases class I (W and Y) 31 328 6.4E-91 T 14-09-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS00815 7e4ad419411b3cfa9496bee9501537a8 234 PANTHER PTHR12818:SF6 1 234 6.3E-134 T 14-09-2016 PAJ_RS00815 7e4ad419411b3cfa9496bee9501537a8 234 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 14-09-2016 IPR023368 Uncharacterised protein family UPF0066, conserved site PAJ_RS00815 7e4ad419411b3cfa9496bee9501537a8 234 Pfam PF01980 Uncharacterised protein family UPF0066 21 142 2.0E-41 T 14-09-2016 IPR023370 TsaA-like domain PAJ_RS00815 7e4ad419411b3cfa9496bee9501537a8 234 SUPERFAMILY SSF118196 2 229 1.15E-82 T 14-09-2016 IPR023370 TsaA-like domain PAJ_RS00815 7e4ad419411b3cfa9496bee9501537a8 234 PANTHER PTHR12818 1 234 6.3E-134 T 14-09-2016 PAJ_RS00815 7e4ad419411b3cfa9496bee9501537a8 234 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 1 149 2.0E-58 T 14-09-2016 IPR023370 TsaA-like domain PAJ_RS00815 7e4ad419411b3cfa9496bee9501537a8 234 Gene3D G3DSA:2.40.30.70 5 157 5.1E-52 T 14-09-2016 IPR023370 TsaA-like domain PAJ_RS17135 61ff0b1143a34b2e16bd0b64d55d9fe0 300 Gene3D G3DSA:3.30.70.1350 207 288 8.0E-32 T 14-09-2016 IPR027470 Cation efflux protein, cytoplasmic domain PAJ_RS17135 61ff0b1143a34b2e16bd0b64d55d9fe0 300 PANTHER PTHR11562:SF55 7 296 2.2E-120 T 14-09-2016 PAJ_RS17135 61ff0b1143a34b2e16bd0b64d55d9fe0 300 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 12 288 1.3E-75 T 14-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PAJ_RS17135 61ff0b1143a34b2e16bd0b64d55d9fe0 300 Gene3D G3DSA:1.20.1510.10 12 206 6.3E-43 T 14-09-2016 IPR027469 Cation efflux protein transmembrane domain PAJ_RS17135 61ff0b1143a34b2e16bd0b64d55d9fe0 300 SUPERFAMILY SSF160240 209 288 9.68E-26 T 14-09-2016 PAJ_RS17135 61ff0b1143a34b2e16bd0b64d55d9fe0 300 PANTHER PTHR11562 7 296 2.2E-120 T 14-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PAJ_RS17135 61ff0b1143a34b2e16bd0b64d55d9fe0 300 SUPERFAMILY SSF161111 9 207 3.79E-50 T 14-09-2016 PAJ_RS17135 61ff0b1143a34b2e16bd0b64d55d9fe0 300 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 287 5.2E-27 T 14-09-2016 IPR027470 Cation efflux protein, cytoplasmic domain PAJ_RS17135 61ff0b1143a34b2e16bd0b64d55d9fe0 300 Pfam PF01545 Cation efflux family 15 206 1.1E-42 T 14-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 Pfam PF08521 Two-component sensor kinase N-terminal 19 166 1.0E-40 T 14-09-2016 IPR013727 Two-component sensor kinase, N-terminal PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 SMART SM00388 243 308 1.8E-10 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 SUPERFAMILY SSF55874 298 449 3.14E-27 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 PANTHER PTHR24423:SF474 185 457 6.7E-54 T 14-09-2016 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 244 307 3.8E-9 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 PANTHER PTHR24423 185 457 6.7E-54 T 14-09-2016 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 355 457 2.6E-14 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 PANTHER PTHR24423:SF474 21 32 6.7E-54 T 14-09-2016 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 SUPERFAMILY SSF47384 226 307 6.47E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 Gene3D G3DSA:3.30.565.10 315 457 9.5E-28 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 Gene3D G3DSA:1.10.287.130 235 304 1.7E-9 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 PANTHER PTHR24423 21 32 6.7E-54 T 14-09-2016 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 Pfam PF00672 HAMP domain 177 238 9.6E-9 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 7.5E-5 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 401 7.5E-5 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 SMART SM00387 354 461 2.6E-26 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10825 b2c1aa5da2bbccf97f72c49a64ed9bae 462 SMART SM00304 191 242 3.7E-4 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 Pfam PF00970 Oxidoreductase FAD-binding domain 156 252 8.1E-9 T 14-09-2016 IPR008333 Oxidoreductase, FAD-binding domain PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 Gene3D G3DSA:3.40.50.80 259 392 1.6E-30 T 14-09-2016 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 PANTHER PTHR22924 1 394 9.6E-111 T 14-09-2016 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 Gene3D G3DSA:2.40.30.10 149 254 2.6E-32 T 14-09-2016 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 1.7E-7 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 1.7E-7 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 356 364 1.7E-7 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 1.7E-7 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 SUPERFAMILY SSF46458 1 141 3.99E-36 T 14-09-2016 IPR009050 Globin-like PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 SUPERFAMILY SSF52343 255 391 3.01E-33 T 14-09-2016 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 Gene3D G3DSA:1.10.490.10 2 140 1.1E-50 T 14-09-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 Hamap MF_01252 Flavohemoprotein [hmp]. 1 394 52.129 T 14-09-2016 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 Pfam PF00042 Globin 7 103 6.6E-12 T 14-09-2016 IPR000971 Globin GO:0019825|GO:0020037 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 Pfam PF00175 Oxidoreductase NAD-binding domain 264 370 3.5E-14 T 14-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PAJ_RS11965 88427b9f9935d83d06e0fc16d1dd7597 394 SUPERFAMILY SSF63380 148 253 1.24E-27 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PAJ_RS09870 64fd61a7cf5e803a6d98121995480706 234 Gene3D G3DSA:3.90.550.10 2 225 2.9E-13 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS09870 64fd61a7cf5e803a6d98121995480706 234 SUPERFAMILY SSF53448 2 226 6.14E-19 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS09870 64fd61a7cf5e803a6d98121995480706 234 PIRSF PIRSF028162 1 233 7.8E-82 T 14-09-2016 IPR016873 Capsular polysaccharide biosynthesis protein, BcbE, predicted PAJ_RS15345 6ada688300dda2949a657aa30e0e9db3 542 Gene3D G3DSA:1.20.140.10 281 446 2.4E-39 T 14-09-2016 PAJ_RS15345 6ada688300dda2949a657aa30e0e9db3 542 SUPERFAMILY SSF56645 85 295 1.16E-29 T 14-09-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PAJ_RS15345 6ada688300dda2949a657aa30e0e9db3 542 SUPERFAMILY SSF47203 295 446 3.22E-38 T 14-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PAJ_RS15345 6ada688300dda2949a657aa30e0e9db3 542 PANTHER PTHR10909:SF289 27 463 6.2E-214 T 14-09-2016 PAJ_RS15345 6ada688300dda2949a657aa30e0e9db3 542 PANTHER PTHR10909 27 463 6.2E-214 T 14-09-2016 PAJ_RS15345 6ada688300dda2949a657aa30e0e9db3 542 Gene3D G3DSA:2.40.110.10 181 280 2.1E-19 T 14-09-2016 PAJ_RS15345 6ada688300dda2949a657aa30e0e9db3 542 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 402 421 - T 14-09-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PAJ_RS15345 6ada688300dda2949a657aa30e0e9db3 542 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 181 279 1.8E-13 T 14-09-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PAJ_RS15345 6ada688300dda2949a657aa30e0e9db3 542 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 289 443 1.0E-28 T 14-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PAJ_RS07030 126045cc09a708af76842880e0399c8b 291 Pfam PF01522 Polysaccharide deacetylase 42 145 1.2E-18 T 14-09-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PAJ_RS07030 126045cc09a708af76842880e0399c8b 291 Gene3D G3DSA:3.20.20.370 3 290 1.8E-82 T 14-09-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PAJ_RS07030 126045cc09a708af76842880e0399c8b 291 PANTHER PTHR10587 1 288 9.4E-110 T 14-09-2016 PAJ_RS07030 126045cc09a708af76842880e0399c8b 291 SUPERFAMILY SSF88713 8 290 1.85E-60 T 14-09-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PAJ_RS07030 126045cc09a708af76842880e0399c8b 291 PANTHER PTHR10587:SF74 1 288 9.4E-110 T 14-09-2016 PAJ_RS12465 9a02b58e2249795879f611a56cc04f21 227 SUPERFAMILY SSF52540 1 222 4.79E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12465 9a02b58e2249795879f611a56cc04f21 227 PANTHER PTHR24220 3 222 4.6E-79 T 14-09-2016 PAJ_RS12465 9a02b58e2249795879f611a56cc04f21 227 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS12465 9a02b58e2249795879f611a56cc04f21 227 Gene3D G3DSA:3.40.50.300 1 222 4.3E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12465 9a02b58e2249795879f611a56cc04f21 227 Pfam PF00005 ABC transporter 22 169 3.6E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS12465 9a02b58e2249795879f611a56cc04f21 227 SMART SM00382 30 218 1.1E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS18715 d96b06f3de7c556b6709d71786ecb31e 256 PANTHER PTHR22769:SF7 85 255 6.5E-52 T 14-09-2016 PAJ_RS18715 d96b06f3de7c556b6709d71786ecb31e 256 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 93 124 4.2E-7 T 14-09-2016 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 PAJ_RS18715 d96b06f3de7c556b6709d71786ecb31e 256 SUPERFAMILY SSF55811 79 241 6.09E-37 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS18715 d96b06f3de7c556b6709d71786ecb31e 256 ProSitePatterns PS00893 Nudix box signature. 159 180 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PAJ_RS18715 d96b06f3de7c556b6709d71786ecb31e 256 Pfam PF00293 NUDIX domain 132 234 2.5E-15 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS18715 d96b06f3de7c556b6709d71786ecb31e 256 SUPERFAMILY SSF55811 4 96 2.43E-28 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS18715 d96b06f3de7c556b6709d71786ecb31e 256 Hamap MF_00297 NADH pyrophosphatase [nudC]. 1 255 42.733 T 14-09-2016 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 PAJ_RS18715 d96b06f3de7c556b6709d71786ecb31e 256 Gene3D G3DSA:3.90.79.10 93 245 2.2E-40 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS18715 d96b06f3de7c556b6709d71786ecb31e 256 PANTHER PTHR22769 85 255 6.5E-52 T 14-09-2016 PAJ_RS18900 09c94272aac2b9fd0112095ff404e178 294 PANTHER PTHR11048 9 285 4.3E-90 T 14-09-2016 PAJ_RS18900 09c94272aac2b9fd0112095ff404e178 294 Pfam PF01040 UbiA prenyltransferase family 28 270 5.6E-67 T 14-09-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 PAJ_RS18900 09c94272aac2b9fd0112095ff404e178 294 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 10 286 2.3E-110 T 14-09-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 PAJ_RS18900 09c94272aac2b9fd0112095ff404e178 294 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 5 288 30.379 T 14-09-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 UniPathway: UPA00232 PAJ_RS07680 7e452bac2b63f5f2114e6be67cf024de 213 Gene3D G3DSA:2.40.10.10 92 172 8.5E-4 T 14-09-2016 PAJ_RS07680 7e452bac2b63f5f2114e6be67cf024de 213 SUPERFAMILY SSF50494 44 205 6.99E-14 T 14-09-2016 IPR009003 Peptidase S1, PA clan PAJ_RS01835 dcff503e07732da6e72bfca33e0443d6 46 PANTHER PTHR18804 1 46 1.7E-20 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS01835 dcff503e07732da6e72bfca33e0443d6 46 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS01835 dcff503e07732da6e72bfca33e0443d6 46 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 17.06 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS01835 dcff503e07732da6e72bfca33e0443d6 46 PANTHER PTHR18804:SF11 1 46 1.7E-20 T 14-09-2016 PAJ_RS01835 dcff503e07732da6e72bfca33e0443d6 46 Pfam PF00444 Ribosomal protein L36 1 41 2.7E-17 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS01835 dcff503e07732da6e72bfca33e0443d6 46 SUPERFAMILY SSF57840 8 41 6.28E-14 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS01835 dcff503e07732da6e72bfca33e0443d6 46 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 9 41 1.0E-9 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19000 5e2748682491524a5d2441d740b59fa0 181 PIRSF PIRSF002070 2 177 2.1E-41 T 14-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PAJ_RS19000 5e2748682491524a5d2441d740b59fa0 181 Gene3D G3DSA:2.40.50.140 4 116 5.1E-57 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19000 5e2748682491524a5d2441d740b59fa0 181 Gene3D G3DSA:2.40.50.140 150 181 5.1E-57 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19000 5e2748682491524a5d2441d740b59fa0 181 SUPERFAMILY SSF50249 4 181 5.14E-62 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19000 5e2748682491524a5d2441d740b59fa0 181 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 39.654 T 14-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PAJ_RS19000 5e2748682491524a5d2441d740b59fa0 181 Pfam PF00436 Single-strand binding protein family 6 112 1.1E-42 T 14-09-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 PAJ_RS19000 5e2748682491524a5d2441d740b59fa0 181 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 181 2.7E-63 T 14-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PAJ_RS19000 5e2748682491524a5d2441d740b59fa0 181 PANTHER PTHR10302 4 181 1.3E-53 T 14-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PAJ_RS01695 15a9e7d6049b173a742f22cb11e4b79a 495 TIGRFAM TIGR00901 2A0125: AmpG-like permease 24 362 9.6E-121 T 14-09-2016 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 GO:0016020 PAJ_RS01695 15a9e7d6049b173a742f22cb11e4b79a 495 Pfam PF07690 Major Facilitator Superfamily 16 365 1.0E-34 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS01695 15a9e7d6049b173a742f22cb11e4b79a 495 PANTHER PTHR12778 2 399 3.2E-116 T 14-09-2016 PAJ_RS01695 15a9e7d6049b173a742f22cb11e4b79a 495 Gene3D G3DSA:1.20.1250.20 13 204 6.1E-19 T 14-09-2016 PAJ_RS01695 15a9e7d6049b173a742f22cb11e4b79a 495 Gene3D G3DSA:1.20.1250.20 213 402 6.5E-12 T 14-09-2016 PAJ_RS01695 15a9e7d6049b173a742f22cb11e4b79a 495 SUPERFAMILY SSF103473 9 402 1.44E-42 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS10330 b419aab1d8e156230b75ce1594640bda 239 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 224 1.2E-57 T 14-09-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 PAJ_RS10330 b419aab1d8e156230b75ce1594640bda 239 SUPERFAMILY SSF55174 1 84 1.77E-13 T 14-09-2016 PAJ_RS10330 b419aab1d8e156230b75ce1594640bda 239 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 14-09-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 PAJ_RS10330 b419aab1d8e156230b75ce1594640bda 239 Gene3D G3DSA:3.10.290.10 1 63 2.1E-21 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS10330 b419aab1d8e156230b75ce1594640bda 239 SMART SM00363 1 69 7.0E-10 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS10330 b419aab1d8e156230b75ce1594640bda 239 PANTHER PTHR21600 1 230 3.5E-75 T 14-09-2016 PAJ_RS10330 b419aab1d8e156230b75ce1594640bda 239 Pfam PF00849 RNA pseudouridylate synthase 62 192 2.1E-18 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS10330 b419aab1d8e156230b75ce1594640bda 239 SUPERFAMILY SSF55120 61 227 4.32E-47 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS10330 b419aab1d8e156230b75ce1594640bda 239 Pfam PF01479 S4 domain 1 47 4.7E-10 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS10330 b419aab1d8e156230b75ce1594640bda 239 PANTHER PTHR21600:SF19 1 230 3.5E-75 T 14-09-2016 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PRINTS PR01003 Flagellar assembly protein FliH signature 160 187 4.8E-83 T 14-09-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PRINTS PR01003 Flagellar assembly protein FliH signature 80 98 4.8E-83 T 14-09-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PRINTS PR01003 Flagellar assembly protein FliH signature 119 136 4.8E-83 T 14-09-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PRINTS PR01003 Flagellar assembly protein FliH signature 188 204 4.8E-83 T 14-09-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PRINTS PR01003 Flagellar assembly protein FliH signature 8 27 4.8E-83 T 14-09-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PRINTS PR01003 Flagellar assembly protein FliH signature 205 230 4.8E-83 T 14-09-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PRINTS PR01003 Flagellar assembly protein FliH signature 99 118 4.8E-83 T 14-09-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PRINTS PR01003 Flagellar assembly protein FliH signature 137 159 4.8E-83 T 14-09-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PRINTS PR01003 Flagellar assembly protein FliH signature 57 79 4.8E-83 T 14-09-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PANTHER PTHR34982 6 226 1.3E-53 T 14-09-2016 PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 Pfam PF02108 Flagellar assembly protein FliH 99 223 1.8E-39 T 14-09-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE PAJ_RS08885 38d4a6605be20029180bdafed7c13dd5 232 PANTHER PTHR34982:SF1 6 226 1.3E-53 T 14-09-2016 PAJ_RS11635 1258d9741b4df5ff6abf5fa5b4cf266c 115 PANTHER PTHR30041 2 115 2.2E-51 T 14-09-2016 PAJ_RS11635 1258d9741b4df5ff6abf5fa5b4cf266c 115 PANTHER PTHR30041:SF4 2 115 2.2E-51 T 14-09-2016 PAJ_RS11635 1258d9741b4df5ff6abf5fa5b4cf266c 115 Pfam PF03960 ArsC family 5 114 4.2E-19 T 14-09-2016 IPR006660 Arsenate reductase-like PAJ_RS11635 1258d9741b4df5ff6abf5fa5b4cf266c 115 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 2 115 3.9E-46 T 14-09-2016 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 PAJ_RS11635 1258d9741b4df5ff6abf5fa5b4cf266c 115 Gene3D G3DSA:3.40.30.10 1 115 1.5E-45 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS11635 1258d9741b4df5ff6abf5fa5b4cf266c 115 SUPERFAMILY SSF52833 1 115 2.43E-34 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS02720 df891050f7489b232c36928f02d74119 588 SUPERFAMILY SSF46977 453 588 4.71E-46 T 14-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 PANTHER PTHR11632 1 573 0.0 T 14-09-2016 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 3.0E-242 T 14-09-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 SUPERFAMILY SSF56425 236 356 1.03E-41 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PAJ_RS02720 df891050f7489b232c36928f02d74119 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 2.3E-35 T 14-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 PIRSF PIRSF000171 1 580 1.8E-47 T 14-09-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit PAJ_RS02720 df891050f7489b232c36928f02d74119 588 Gene3D G3DSA:3.90.700.10 243 349 1.1E-40 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PAJ_RS02720 df891050f7489b232c36928f02d74119 588 SUPERFAMILY SSF51905 359 428 1.55E-75 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 SUPERFAMILY SSF51905 5 259 1.55E-75 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 Gene3D G3DSA:1.20.58.100 446 554 9.0E-38 T 14-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 9.2E-278 T 14-09-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 PANTHER PTHR11632:SF5 1 573 0.0 T 14-09-2016 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 Gene3D G3DSA:4.10.80.40 555 588 2.0E-21 T 14-09-2016 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 Pfam PF00890 FAD binding domain 9 405 4.5E-119 T 14-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PAJ_RS02720 df891050f7489b232c36928f02d74119 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 14-09-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 Gene3D G3DSA:3.50.50.60 351 425 3.9E-119 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS02720 df891050f7489b232c36928f02d74119 588 Gene3D G3DSA:3.50.50.60 6 242 3.9E-119 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 ProSitePatterns PS00163 Fumarate lyases signature. 273 282 - T 14-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 Pfam PF00206 Lyase 10 296 8.8E-53 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 SMART SM00998 361 440 7.4E-24 T 14-09-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 TIGRFAM TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase 3 346 3.5E-120 T 14-09-2016 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase GO:0019619|GO:0047472 KEGG: 00362+5.5.1.2 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 Gene3D G3DSA:1.20.200.10 101 368 3.3E-81 T 14-09-2016 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 PANTHER PTHR11444:SF21 1 440 5.4E-163 T 14-09-2016 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 Pfam PF10397 Adenylosuccinate lyase C-terminus 362 438 8.5E-19 T 14-09-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 SUPERFAMILY SSF48557 2 441 4.71E-109 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 PRINTS PR00145 Argininosuccinate lyase family signature 228 252 3.3E-9 T 14-09-2016 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 PRINTS PR00145 Argininosuccinate lyase family signature 97 119 3.3E-9 T 14-09-2016 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 PRINTS PR00145 Argininosuccinate lyase family signature 273 289 3.3E-9 T 14-09-2016 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 PRINTS PR00145 Argininosuccinate lyase family signature 138 158 3.3E-9 T 14-09-2016 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 PANTHER PTHR11444 1 440 5.4E-163 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 Gene3D G3DSA:1.10.40.30 369 440 1.0E-26 T 14-09-2016 PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 PRINTS PR00149 Fumarate lyase superfamily signature 273 289 2.3E-22 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 PRINTS PR00149 Fumarate lyase superfamily signature 143 161 2.3E-22 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 PRINTS PR00149 Fumarate lyase superfamily signature 228 255 2.3E-22 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 PRINTS PR00149 Fumarate lyase superfamily signature 98 116 2.3E-22 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS14415 3f73a8ed982784b3bdf4c48bc20f1511 446 Gene3D G3DSA:1.10.275.10 7 100 2.8E-32 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal PAJ_RS04500 521839276d3db950debb1dfb4add8926 320 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 193 3.0E-61 T 14-09-2016 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 PAJ_RS04500 521839276d3db950debb1dfb4add8926 320 Pfam PF00700 Bacterial flagellin C-terminal helical region 240 317 7.0E-5 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS04500 521839276d3db950debb1dfb4add8926 320 PANTHER PTHR30244 1 319 5.7E-82 T 14-09-2016 PAJ_RS04500 521839276d3db950debb1dfb4add8926 320 SUPERFAMILY SSF64518 1 318 1.11E-56 T 14-09-2016 PAJ_RS04500 521839276d3db950debb1dfb4add8926 320 PANTHER PTHR30244:SF5 1 319 5.7E-82 T 14-09-2016 PAJ_RS04500 521839276d3db950debb1dfb4add8926 320 Gene3D G3DSA:1.20.1330.10 220 263 6.6E-14 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS04500 521839276d3db950debb1dfb4add8926 320 Gene3D G3DSA:1.20.1330.10 58 168 6.6E-14 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS04500 521839276d3db950debb1dfb4add8926 320 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 141 1.3E-22 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS03240 28fce35d3ffb762a3a51711e4822613c 263 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03240 28fce35d3ffb762a3a51711e4822613c 263 SUPERFAMILY SSF52540 9 252 1.61E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03240 28fce35d3ffb762a3a51711e4822613c 263 SMART SM00382 33 231 6.2E-17 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03240 28fce35d3ffb762a3a51711e4822613c 263 Pfam PF00005 ABC transporter 24 183 1.2E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03240 28fce35d3ffb762a3a51711e4822613c 263 PIRSF PIRSF039085 5 259 1.0E-114 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PAJ_RS03240 28fce35d3ffb762a3a51711e4822613c 263 Gene3D G3DSA:3.40.50.300 8 255 6.9E-79 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03240 28fce35d3ffb762a3a51711e4822613c 263 PANTHER PTHR24220:SF472 10 257 2.8E-134 T 14-09-2016 PAJ_RS03240 28fce35d3ffb762a3a51711e4822613c 263 PANTHER PTHR24220 10 257 2.8E-134 T 14-09-2016 PAJ_RS12285 260a7e5ae8c4bac3b6d7fb3a7f757c3a 310 Gene3D G3DSA:2.120.10.30 41 304 3.3E-61 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like PAJ_RS12285 260a7e5ae8c4bac3b6d7fb3a7f757c3a 310 PANTHER PTHR10907 7 307 1.2E-73 T 14-09-2016 PAJ_RS12285 260a7e5ae8c4bac3b6d7fb3a7f757c3a 310 PANTHER PTHR10907:SF47 7 307 1.2E-73 T 14-09-2016 PAJ_RS12285 260a7e5ae8c4bac3b6d7fb3a7f757c3a 310 SUPERFAMILY SSF63829 29 303 9.59E-58 T 14-09-2016 PAJ_RS12285 260a7e5ae8c4bac3b6d7fb3a7f757c3a 310 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 46 284 3.0E-40 T 14-09-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region PAJ_RS12285 260a7e5ae8c4bac3b6d7fb3a7f757c3a 310 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 163 185 1.7E-8 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS12285 260a7e5ae8c4bac3b6d7fb3a7f757c3a 310 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 224 241 1.7E-8 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS12285 260a7e5ae8c4bac3b6d7fb3a7f757c3a 310 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 267 285 1.7E-8 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 PANTHER PTHR24322 165 196 1.6E-90 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 PANTHER PTHR24322:SF337 165 196 1.6E-90 T 14-09-2016 PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 PANTHER PTHR24322 17 149 1.6E-90 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 Pfam PF00106 short chain dehydrogenase 14 210 6.5E-50 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 Gene3D G3DSA:3.40.50.720 6 246 5.3E-64 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 PANTHER PTHR24322:SF337 17 149 1.6E-90 T 14-09-2016 PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 3.9E-22 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 3.9E-22 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 3.9E-22 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 3.9E-22 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 3.9E-22 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 3.9E-22 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 SUPERFAMILY SSF51735 10 247 1.1E-61 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07655 114f1ba2827d257ce61e20a2656981bb 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 196 0.0064 T 14-09-2016 PAJ_RS18625 565e5b5873cd24d8d970635174ad3656 315 Gene3D G3DSA:3.40.50.300 9 315 1.2E-109 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18625 565e5b5873cd24d8d970635174ad3656 315 SUPERFAMILY SSF52540 9 314 3.37E-78 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18625 565e5b5873cd24d8d970635174ad3656 315 PANTHER PTHR10285 277 315 3.7E-171 T 14-09-2016 PAJ_RS18625 565e5b5873cd24d8d970635174ad3656 315 PANTHER PTHR10285 1 261 3.7E-171 T 14-09-2016 PAJ_RS18625 565e5b5873cd24d8d970635174ad3656 315 PANTHER PTHR10285:SF7 1 261 3.7E-171 T 14-09-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 PAJ_RS18625 565e5b5873cd24d8d970635174ad3656 315 PANTHER PTHR10285:SF7 277 315 3.7E-171 T 14-09-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 PAJ_RS18625 565e5b5873cd24d8d970635174ad3656 315 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 89 242 1.2E-14 T 14-09-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 PAJ_RS18625 565e5b5873cd24d8d970635174ad3656 315 Hamap MF_00215 Pantothenate kinase [coaA]. 1 315 188.048 T 14-09-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 PAJ_RS18625 565e5b5873cd24d8d970635174ad3656 315 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 9 315 3.6E-174 T 14-09-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 PAJ_RS18625 565e5b5873cd24d8d970635174ad3656 315 PIRSF PIRSF000545 1 315 7.4E-148 T 14-09-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 PAJ_RS20535 d2023e741a0e4fe719bf387c119d14e0 354 PANTHER PTHR11019:SF52 259 354 6.3E-25 T 14-09-2016 PAJ_RS20535 d2023e741a0e4fe719bf387c119d14e0 354 SUPERFAMILY SSF46689 299 348 8.6E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS20535 d2023e741a0e4fe719bf387c119d14e0 354 Pfam PF12833 Helix-turn-helix domain 270 347 9.4E-18 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS20535 d2023e741a0e4fe719bf387c119d14e0 354 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 38 220 2.6E-49 T 14-09-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PAJ_RS20535 d2023e741a0e4fe719bf387c119d14e0 354 SMART SM00342 264 346 1.3E-23 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS20535 d2023e741a0e4fe719bf387c119d14e0 354 Gene3D G3DSA:1.10.10.60 299 349 1.3E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS20535 d2023e741a0e4fe719bf387c119d14e0 354 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 315 330 1.1E-5 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS20535 d2023e741a0e4fe719bf387c119d14e0 354 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 330 346 1.1E-5 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS20535 d2023e741a0e4fe719bf387c119d14e0 354 PANTHER PTHR11019 259 354 6.3E-25 T 14-09-2016 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 PANTHER PTHR11014:SF80 6 389 2.5E-97 T 14-09-2016 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 13 381 1.0E-119 T 14-09-2016 IPR010169 Acetylornithine deacetylase (ArgE) GO:0005737|GO:0006526|GO:0008270|GO:0008777|GO:0050897 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154|UniPathway: UPA00068 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 Pfam PF01546 Peptidase family M20/M25/M40 72 381 2.8E-33 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 SUPERFAMILY SSF53187 6 179 2.86E-57 T 14-09-2016 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 SUPERFAMILY SSF53187 308 381 2.86E-57 T 14-09-2016 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 SUPERFAMILY SSF55031 180 282 5.23E-22 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 106 143 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 71 80 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 Pfam PF07687 Peptidase dimerisation domain 176 283 7.4E-21 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 Gene3D G3DSA:3.40.630.10 6 188 5.8E-63 T 14-09-2016 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 Gene3D G3DSA:3.40.630.10 327 381 5.8E-63 T 14-09-2016 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 PANTHER PTHR11014 6 389 2.5E-97 T 14-09-2016 PAJ_RS00975 a9008b931fa01ce3a7c491b5dadf1455 389 Gene3D G3DSA:3.30.70.360 189 282 6.6E-23 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS18050 b49ad915b5c74e470386f6c70da44c1a 309 PIRSF PIRSF015626 30 309 5.3E-80 T 14-09-2016 IPR003786 Protein FdhD GO:0016783 PAJ_RS18050 b49ad915b5c74e470386f6c70da44c1a 309 PANTHER PTHR30592 40 308 2.8E-123 T 14-09-2016 PAJ_RS18050 b49ad915b5c74e470386f6c70da44c1a 309 Hamap MF_00187 Protein FdhD [fdhD]. 34 309 35.915 T 14-09-2016 IPR003786 Protein FdhD GO:0016783 PAJ_RS18050 b49ad915b5c74e470386f6c70da44c1a 309 Gene3D G3DSA:3.40.140.10 174 308 1.6E-47 T 14-09-2016 PAJ_RS18050 b49ad915b5c74e470386f6c70da44c1a 309 Gene3D G3DSA:3.10.20.10 75 160 2.0E-31 T 14-09-2016 PAJ_RS18050 b49ad915b5c74e470386f6c70da44c1a 309 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 69 308 5.4E-90 T 14-09-2016 IPR003786 Protein FdhD GO:0016783 PAJ_RS18050 b49ad915b5c74e470386f6c70da44c1a 309 PANTHER PTHR30592:SF1 40 308 2.8E-123 T 14-09-2016 PAJ_RS18050 b49ad915b5c74e470386f6c70da44c1a 309 SUPERFAMILY SSF53927 56 308 5.72E-79 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 PAJ_RS18050 b49ad915b5c74e470386f6c70da44c1a 309 Pfam PF02634 FdhD/NarQ family 73 308 1.2E-70 T 14-09-2016 IPR003786 Protein FdhD GO:0016783 PAJ_RS11555 3571fe123f15bfb5d0f340d40d5c30b2 343 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 9 342 36.575 T 14-09-2016 IPR014524 Outer membrane protein assembly factor BamC PAJ_RS11555 3571fe123f15bfb5d0f340d40d5c30b2 343 PIRSF PIRSF026343 9 343 1.3E-117 T 14-09-2016 IPR014524 Outer membrane protein assembly factor BamC PAJ_RS11555 3571fe123f15bfb5d0f340d40d5c30b2 343 Pfam PF06804 NlpB/DapX lipoprotein 40 341 8.3E-111 T 14-09-2016 IPR010653 NlpB/DapX lipoprotein PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 PANTHER PTHR30582:SF10 30 230 4.6E-234 T 14-09-2016 PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 Gene3D G3DSA:1.10.101.10 303 345 1.8E-19 T 14-09-2016 IPR002477 Peptidoglycan binding-like PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 Gene3D G3DSA:1.10.101.10 211 248 1.8E-19 T 14-09-2016 IPR002477 Peptidoglycan binding-like PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 PANTHER PTHR30582:SF10 302 421 4.6E-234 T 14-09-2016 PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 SUPERFAMILY SSF47090 304 345 4.32E-9 T 14-09-2016 IPR002477 Peptidoglycan binding-like PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 PANTHER PTHR30582 302 421 4.6E-234 T 14-09-2016 PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 PANTHER PTHR30582 30 230 4.6E-234 T 14-09-2016 PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 Gene3D G3DSA:2.40.440.10 476 523 5.5E-14 T 14-09-2016 PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 Gene3D G3DSA:2.40.440.10 359 408 5.5E-14 T 14-09-2016 PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 PANTHER PTHR30582 458 603 4.6E-234 T 14-09-2016 PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 Pfam PF01471 Putative peptidoglycan binding domain 305 337 1.4E-5 T 14-09-2016 IPR002477 Peptidoglycan binding-like PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 SUPERFAMILY SSF141523 474 523 2.09E-19 T 14-09-2016 PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 SUPERFAMILY SSF141523 366 417 2.09E-19 T 14-09-2016 PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 Pfam PF03734 L,D-transpeptidase catalytic domain 365 532 8.5E-29 T 14-09-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 PAJ_RS03700 71f67c650ee0d1c7c08087e828a1a2f0 605 PANTHER PTHR30582:SF10 458 603 4.6E-234 T 14-09-2016 PAJ_RS19685 0502863d66ebec914f1122e719ae9283 142 Pfam PF00572 Ribosomal protein L13 15 138 9.9E-57 T 14-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 PAJ_RS19685 0502863d66ebec914f1122e719ae9283 142 PIRSF PIRSF002181 1 142 2.0E-51 T 14-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 PAJ_RS19685 0502863d66ebec914f1122e719ae9283 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 14-09-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 PAJ_RS19685 0502863d66ebec914f1122e719ae9283 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 2.5E-67 T 14-09-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 PAJ_RS19685 0502863d66ebec914f1122e719ae9283 142 SUPERFAMILY SSF52161 1 140 1.96E-60 T 14-09-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 PAJ_RS19685 0502863d66ebec914f1122e719ae9283 142 Gene3D G3DSA:3.90.1180.10 3 141 6.1E-65 T 14-09-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 PAJ_RS19685 0502863d66ebec914f1122e719ae9283 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.599 T 14-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 PAJ_RS19685 0502863d66ebec914f1122e719ae9283 142 PANTHER PTHR11545 1 142 3.7E-81 T 14-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 PAJ_RS05570 aa8966f509d7b2d3c105cea5fb32d719 405 PANTHER PTHR30329 198 393 5.4E-54 T 14-09-2016 PAJ_RS05570 aa8966f509d7b2d3c105cea5fb32d719 405 Gene3D G3DSA:3.30.1330.60 267 391 5.3E-19 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS05570 aa8966f509d7b2d3c105cea5fb32d719 405 PANTHER PTHR30329:SF7 198 393 5.4E-54 T 14-09-2016 PAJ_RS05570 aa8966f509d7b2d3c105cea5fb32d719 405 PANTHER PTHR30329 77 155 5.4E-54 T 14-09-2016 PAJ_RS05570 aa8966f509d7b2d3c105cea5fb32d719 405 Pfam PF09850 Type VI secretion system protein DotU 19 220 1.9E-65 T 14-09-2016 IPR017732 Type IV / VI secretion system, DotU PAJ_RS05570 aa8966f509d7b2d3c105cea5fb32d719 405 PANTHER PTHR30329:SF7 77 155 5.4E-54 T 14-09-2016 PAJ_RS05570 aa8966f509d7b2d3c105cea5fb32d719 405 Pfam PF00691 OmpA family 288 385 4.4E-6 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS05570 aa8966f509d7b2d3c105cea5fb32d719 405 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 17 226 7.4E-64 T 14-09-2016 IPR017732 Type IV / VI secretion system, DotU PAJ_RS05570 aa8966f509d7b2d3c105cea5fb32d719 405 SUPERFAMILY SSF103088 279 391 8.5E-19 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS12925 dc23cb44b46bf2ff158863c7388bbb5c 243 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 20 241 9.1E-96 T 14-09-2016 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 PAJ_RS12925 dc23cb44b46bf2ff158863c7388bbb5c 243 PANTHER PTHR23293:SF5 1 243 8.3E-97 T 14-09-2016 PAJ_RS12925 dc23cb44b46bf2ff158863c7388bbb5c 243 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 47 218 5.2E-50 T 14-09-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 PAJ_RS12925 dc23cb44b46bf2ff158863c7388bbb5c 243 Gene3D G3DSA:3.40.50.620 9 215 1.2E-63 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS12925 dc23cb44b46bf2ff158863c7388bbb5c 243 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 32 242 4.7E-89 T 14-09-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 PAJ_RS12925 dc23cb44b46bf2ff158863c7388bbb5c 243 PANTHER PTHR23293 1 243 8.3E-97 T 14-09-2016 PAJ_RS12925 dc23cb44b46bf2ff158863c7388bbb5c 243 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 8 242 39.54 T 14-09-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 PAJ_RS12925 dc23cb44b46bf2ff158863c7388bbb5c 243 PIRSF PIRSF000857 3 243 1.7E-56 T 14-09-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 PAJ_RS12925 dc23cb44b46bf2ff158863c7388bbb5c 243 SUPERFAMILY SSF52402 19 207 1.09E-53 T 14-09-2016 PAJ_RS13395 36f1757b1e864b88f78f40cfae6d0f98 359 PANTHER PTHR30559:SF0 2 359 5.1E-246 T 14-09-2016 PAJ_RS13395 36f1757b1e864b88f78f40cfae6d0f98 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 355 2.2E-89 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS13395 36f1757b1e864b88f78f40cfae6d0f98 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 358 7.4E-188 T 14-09-2016 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS13395 36f1757b1e864b88f78f40cfae6d0f98 359 PIRSF PIRSF001359 13 359 5.6E-100 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS13395 36f1757b1e864b88f78f40cfae6d0f98 359 SUPERFAMILY SSF51569 4 357 1.21E-132 T 14-09-2016 PAJ_RS13395 36f1757b1e864b88f78f40cfae6d0f98 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 357 1.9E-114 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS13395 36f1757b1e864b88f78f40cfae6d0f98 359 Gene3D G3DSA:3.20.20.70 11 356 3.2E-124 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS13395 36f1757b1e864b88f78f40cfae6d0f98 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS13395 36f1757b1e864b88f78f40cfae6d0f98 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS13395 36f1757b1e864b88f78f40cfae6d0f98 359 PANTHER PTHR30559 2 359 5.1E-246 T 14-09-2016 PAJ_RS14565 0cda630a8da1e0428d649f330da05efa 260 PIRSF PIRSF006157 1 260 1.8E-90 T 14-09-2016 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type GO:0008270|GO:0016701|GO:0055114 PAJ_RS14565 0cda630a8da1e0428d649f330da05efa 260 PANTHER PTHR30096 5 260 3.6E-98 T 14-09-2016 PAJ_RS14565 0cda630a8da1e0428d649f330da05efa 260 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 258 7.7E-28 T 14-09-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PAJ_RS14565 0cda630a8da1e0428d649f330da05efa 260 PANTHER PTHR30096:SF0 5 260 3.6E-98 T 14-09-2016 PAJ_RS14565 0cda630a8da1e0428d649f330da05efa 260 SUPERFAMILY SSF53213 5 259 1.96E-89 T 14-09-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PAJ_RS14565 0cda630a8da1e0428d649f330da05efa 260 Gene3D G3DSA:3.40.830.10 3 260 2.7E-94 T 14-09-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 SUPERFAMILY SSF52540 365 812 1.27E-100 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 Gene3D G3DSA:3.40.50.300 657 752 2.0E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 Gene3D G3DSA:3.40.50.300 368 455 2.0E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 SUPERFAMILY SSF52540 1 347 4.67E-125 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1087 0.0 T 14-09-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 PIRSF PIRSF000980 1 1125 0.0 T 14-09-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 807 1.1E-295 T 14-09-2016 PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1123 13.448 T 14-09-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 SUPERFAMILY SSF52980 819 1120 1.61E-90 T 14-09-2016 IPR011335 Restriction endonuclease type II-like PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 Gene3D G3DSA:1.10.10.160 86 183 2.0E-32 T 14-09-2016 IPR013986 DExx box DNA helicase domain PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 PANTHER PTHR30591:SF1 1 1106 0.0 T 14-09-2016 PAJ_RS13160 d5cd0a5baec5026b686733ced6b6085b 1125 PANTHER PTHR30591 1 1106 0.0 T 14-09-2016 PAJ_RS03730 e5251f664c83087860c5dff8b5e07992 401 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 8 395 2.7E-164 T 14-09-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PAJ_RS03730 e5251f664c83087860c5dff8b5e07992 401 PANTHER PTHR11098 7 397 1.7E-249 T 14-09-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PAJ_RS03730 e5251f664c83087860c5dff8b5e07992 401 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 5 396 48.643 T 14-09-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PAJ_RS03730 e5251f664c83087860c5dff8b5e07992 401 SUPERFAMILY SSF51690 120 135 6.08E-84 T 14-09-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 PAJ_RS03730 e5251f664c83087860c5dff8b5e07992 401 SUPERFAMILY SSF51690 166 393 6.08E-84 T 14-09-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 PAJ_RS03730 e5251f664c83087860c5dff8b5e07992 401 SUPERFAMILY SSF54675 4 137 1.06E-43 T 14-09-2016 PAJ_RS03730 e5251f664c83087860c5dff8b5e07992 401 PANTHER PTHR11098:SF14 7 397 1.7E-249 T 14-09-2016 PAJ_RS03730 e5251f664c83087860c5dff8b5e07992 401 PIRSF PIRSF000484 2 394 8.5E-61 T 14-09-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PAJ_RS03730 e5251f664c83087860c5dff8b5e07992 401 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 169 395 2.4E-80 T 14-09-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PAJ_RS03730 e5251f664c83087860c5dff8b5e07992 401 Gene3D G3DSA:3.20.140.10 5 395 1.1E-144 T 14-09-2016 PAJ_RS04210 13867a12e6c955a83ca4fe5cf09907d5 1068 SUPERFAMILY SSF49265 616 715 6.83E-6 T 14-09-2016 IPR003961 Fibronectin type III GO:0005515 PAJ_RS04210 13867a12e6c955a83ca4fe5cf09907d5 1068 Pfam PF09327 Domain of unknown function (DUF1983) 915 994 1.7E-22 T 14-09-2016 IPR015406 Domain of unknown function DUF1983 PAJ_RS04210 13867a12e6c955a83ca4fe5cf09907d5 1068 PANTHER PTHR36251 1 1001 0.0 T 14-09-2016 PAJ_RS04210 13867a12e6c955a83ca4fe5cf09907d5 1068 PANTHER PTHR36251:SF2 1 1001 0.0 T 14-09-2016 PAJ_RS04210 13867a12e6c955a83ca4fe5cf09907d5 1068 Pfam PF13550 Putative phage tail protein 344 510 6.2E-13 T 14-09-2016 IPR032876 Tip attachment protein J PAJ_RS04210 13867a12e6c955a83ca4fe5cf09907d5 1068 Gene3D G3DSA:2.60.40.10 664 715 6.6E-4 T 14-09-2016 IPR013783 Immunoglobulin-like fold PAJ_RS03430 3558652964f295171df87f0bd876a71a 300 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 54.169 T 14-09-2016 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK PAJ_RS03430 3558652964f295171df87f0bd876a71a 300 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 286 4.9E-89 T 14-09-2016 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 PAJ_RS03430 3558652964f295171df87f0bd876a71a 300 Gene3D G3DSA:3.30.470.20 174 277 5.8E-36 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS03430 3558652964f295171df87f0bd876a71a 300 Pfam PF08443 RimK-like ATP-grasp domain 97 286 3.6E-74 T 14-09-2016 IPR013651 ATP-grasp fold, RimK-type PAJ_RS03430 3558652964f295171df87f0bd876a71a 300 Gene3D G3DSA:3.30.1490.20 103 173 1.4E-7 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS03430 3558652964f295171df87f0bd876a71a 300 Gene3D G3DSA:3.40.50.20 8 102 1.1E-14 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS03430 3558652964f295171df87f0bd876a71a 300 PANTHER PTHR21621 1 288 4.6E-120 T 14-09-2016 PAJ_RS03430 3558652964f295171df87f0bd876a71a 300 PANTHER PTHR21621:SF0 1 288 4.6E-120 T 14-09-2016 PAJ_RS03430 3558652964f295171df87f0bd876a71a 300 SUPERFAMILY SSF56059 98 288 1.11E-49 T 14-09-2016 PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 SUPERFAMILY SSF46785 6 83 2.33E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 Gene3D G3DSA:1.20.120.530 93 229 8.5E-24 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 SUPERFAMILY SSF48008 98 220 3.66E-23 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 2.2E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 2.2E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 SMART SM00345 15 74 6.6E-18 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 Pfam PF07729 FCD domain 100 218 9.7E-22 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 SMART SM00895 100 222 1.7E-13 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 PANTHER PTHR11751 14 76 7.0E-22 T 14-09-2016 PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 PANTHER PTHR11751 93 116 7.0E-22 T 14-09-2016 PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 Gene3D G3DSA:1.10.10.10 6 77 8.5E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20620 5bc9306a7b47244c23e82767095031d0 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 74 3.6E-17 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS18390 18fc7508333ea9794afc62b51f6bff49 274 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 273 2.8E-100 T 14-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS18390 18fc7508333ea9794afc62b51f6bff49 274 Gene3D G3DSA:3.10.310.10 1 120 7.8E-50 T 14-09-2016 PAJ_RS18390 18fc7508333ea9794afc62b51f6bff49 274 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 14-09-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS18390 18fc7508333ea9794afc62b51f6bff49 274 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 274 39.889 T 14-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS18390 18fc7508333ea9794afc62b51f6bff49 274 SUPERFAMILY SSF54506 2 273 9.6E-56 T 14-09-2016 PAJ_RS18390 18fc7508333ea9794afc62b51f6bff49 274 Pfam PF01678 Diaminopimelate epimerase 3 123 3.3E-34 T 14-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS18390 18fc7508333ea9794afc62b51f6bff49 274 Pfam PF01678 Diaminopimelate epimerase 152 267 2.3E-31 T 14-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS18390 18fc7508333ea9794afc62b51f6bff49 274 PANTHER PTHR31689 1 272 1.1E-139 T 14-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS18390 18fc7508333ea9794afc62b51f6bff49 274 Gene3D G3DSA:3.10.310.10 121 262 4.7E-52 T 14-09-2016 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 Gene3D G3DSA:3.40.710.10 33 289 2.5E-108 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 PANTHER PTHR35333:SF2 11 288 3.2E-87 T 14-09-2016 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 SUPERFAMILY SSF56601 33 291 2.96E-81 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 PRINTS PR00118 Beta-lactamase class A signature 145 169 5.9E-68 T 14-09-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 PRINTS PR00118 Beta-lactamase class A signature 207 222 5.9E-68 T 14-09-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 PRINTS PR00118 Beta-lactamase class A signature 109 134 5.9E-68 T 14-09-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 PRINTS PR00118 Beta-lactamase class A signature 171 196 5.9E-68 T 14-09-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 PRINTS PR00118 Beta-lactamase class A signature 224 239 5.9E-68 T 14-09-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 PRINTS PR00118 Beta-lactamase class A signature 36 60 5.9E-68 T 14-09-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 PRINTS PR00118 Beta-lactamase class A signature 67 84 5.9E-68 T 14-09-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 Pfam PF13354 Beta-lactamase enzyme family 56 263 2.2E-43 T 14-09-2016 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 PANTHER PTHR35333 11 288 3.2E-87 T 14-09-2016 PAJ_RS06090 7244c6cf537e30b7c9f7cee814a14f2a 293 ProSitePatterns PS00146 Beta-lactamase class-A active site. 69 84 - T 14-09-2016 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 PAJ_RS05370 4b0abb6f9e77cf1817d53c07103fa897 475 SUPERFAMILY SSF50475 3 309 3.45E-82 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PAJ_RS05370 4b0abb6f9e77cf1817d53c07103fa897 475 Hamap MF_01985 Phenolic acid decarboxylase subunit C. 1 472 70.107 T 14-09-2016 IPR032902 Phenolic acid decarboxylase subunit C GO:0016831 KEGG: 00627+4.1.1.61 PAJ_RS05370 4b0abb6f9e77cf1817d53c07103fa897 475 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 441 3.4E-126 T 14-09-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 PAJ_RS05370 4b0abb6f9e77cf1817d53c07103fa897 475 Gene3D G3DSA:3.40.1670.10 326 440 1.5E-32 T 14-09-2016 PAJ_RS05370 4b0abb6f9e77cf1817d53c07103fa897 475 SUPERFAMILY SSF143968 312 467 3.27E-40 T 14-09-2016 PAJ_RS05370 4b0abb6f9e77cf1817d53c07103fa897 475 PANTHER PTHR30108:SF11 1 467 0.0 T 14-09-2016 PAJ_RS05370 4b0abb6f9e77cf1817d53c07103fa897 475 PANTHER PTHR30108 1 467 0.0 T 14-09-2016 PAJ_RS05370 4b0abb6f9e77cf1817d53c07103fa897 475 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 416 2.2E-104 T 14-09-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1043 0.0 T 14-09-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 SUPERFAMILY SSF82866 814 1037 4.97E-42 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 Gene3D G3DSA:3.30.70.1440 679 727 1.1E-15 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 Gene3D G3DSA:3.30.70.1440 824 857 1.1E-15 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 SUPERFAMILY SSF82714 185 275 1.57E-20 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 SUPERFAMILY SSF82866 299 499 1.23E-50 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 Gene3D G3DSA:3.30.2090.10 184 278 9.8E-29 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PANTHER PTHR32063:SF11 1 1041 0.0 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PANTHER PTHR32063 1 1041 0.0 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 SUPERFAMILY SSF82693 277 333 1.69E-26 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 SUPERFAMILY SSF82693 139 184 1.69E-26 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.3E-91 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 8.3E-91 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 8.3E-91 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PRINTS PR00702 Acriflavin resistance protein family signature 631 645 8.3E-91 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.3E-91 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 8.3E-91 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 8.3E-91 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 8.3E-91 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 PRINTS PR00702 Acriflavin resistance protein family signature 562 579 8.3E-91 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 Gene3D G3DSA:3.30.70.1430 41 141 9.7E-32 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 SUPERFAMILY SSF82693 41 135 2.59E-26 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 Gene3D G3DSA:1.20.1640.10 858 1040 8.2E-44 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 Gene3D G3DSA:1.10.3850.10 284 500 9.0E-62 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 SUPERFAMILY SSF82714 729 815 2.35E-20 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 Pfam PF00873 AcrB/AcrD/AcrF family 3 1034 0.0 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 SUPERFAMILY SSF82693 575 678 6.28E-21 T 14-09-2016 PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 Gene3D G3DSA:3.30.2090.10 729 814 7.3E-22 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS06480 2de853c9fba44835fc6d3986814391ac 1051 Gene3D G3DSA:3.30.70.1430 579 677 1.3E-21 T 14-09-2016 PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 PIRSF PIRSF006205 1 398 2.2E-156 T 14-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 Gene3D G3DSA:1.10.1740.10 314 394 1.9E-30 T 14-09-2016 PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 9.3E-37 T 14-09-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 SUPERFAMILY SSF51735 2 150 1.61E-47 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 Gene3D G3DSA:3.40.50.720 1 150 2.3E-57 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 392 46.598 T 14-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 PANTHER PTHR30525 1 393 9.9E-228 T 14-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 SUPERFAMILY SSF69055 302 394 4.19E-31 T 14-09-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 1.3E-41 T 14-09-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 SUPERFAMILY SSF55347 126 274 5.89E-63 T 14-09-2016 PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 391 1.5E-176 T 14-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS00710 2b2450199de656c5b00b1cd8a48ecf44 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 1.1E-46 T 14-09-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS12270 ea32bd18286deba0ad9682b002390b7e 238 PANTHER PTHR30136:SF14 3 235 2.5E-42 T 14-09-2016 PAJ_RS12270 ea32bd18286deba0ad9682b002390b7e 238 SMART SM00346 6 95 5.2E-19 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS12270 ea32bd18286deba0ad9682b002390b7e 238 Gene3D G3DSA:3.30.450.40 165 226 2.6E-11 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS12270 ea32bd18286deba0ad9682b002390b7e 238 SUPERFAMILY SSF46785 6 79 1.29E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12270 ea32bd18286deba0ad9682b002390b7e 238 Gene3D G3DSA:1.10.10.10 5 68 3.8E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12270 ea32bd18286deba0ad9682b002390b7e 238 SUPERFAMILY SSF55781 63 225 8.83E-26 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS12270 ea32bd18286deba0ad9682b002390b7e 238 Pfam PF01614 Bacterial transcriptional regulator 172 221 6.9E-5 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal PAJ_RS12270 ea32bd18286deba0ad9682b002390b7e 238 Pfam PF09339 IclR helix-turn-helix domain 8 58 1.6E-13 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS12270 ea32bd18286deba0ad9682b002390b7e 238 Gene3D G3DSA:3.30.450.40 72 151 8.2E-16 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS12270 ea32bd18286deba0ad9682b002390b7e 238 PANTHER PTHR30136 3 235 2.5E-42 T 14-09-2016 PAJ_RS20080 01f50e568c234a17acb0ac553c29cdbf 253 PANTHER PTHR42637:SF1 1 252 3.8E-96 T 14-09-2016 PAJ_RS20080 01f50e568c234a17acb0ac553c29cdbf 253 PANTHER PTHR42637 1 252 3.8E-96 T 14-09-2016 PAJ_RS20080 01f50e568c234a17acb0ac553c29cdbf 253 Gene3D G3DSA:1.20.1260.10 105 251 1.8E-85 T 14-09-2016 IPR012347 Ferritin-related PAJ_RS20080 01f50e568c234a17acb0ac553c29cdbf 253 Gene3D G3DSA:1.20.1260.10 6 57 1.8E-85 T 14-09-2016 IPR012347 Ferritin-related PAJ_RS20080 01f50e568c234a17acb0ac553c29cdbf 253 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 6 248 1.1E-107 T 14-09-2016 IPR010386 tRNA-hydroxylase MiaE KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00729 PAJ_RS20080 01f50e568c234a17acb0ac553c29cdbf 253 PIRSF PIRSF020736 1 253 2.0E-88 T 14-09-2016 IPR010386 tRNA-hydroxylase MiaE KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00729 PAJ_RS20080 01f50e568c234a17acb0ac553c29cdbf 253 SUPERFAMILY SSF47240 105 251 5.61E-71 T 14-09-2016 IPR009078 Ferritin-like superfamily PAJ_RS20080 01f50e568c234a17acb0ac553c29cdbf 253 SUPERFAMILY SSF47240 7 57 5.61E-71 T 14-09-2016 IPR009078 Ferritin-like superfamily PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 PANTHER PTHR11412:SF104 1614 1621 4.2E-233 T 14-09-2016 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 PIRSF PIRSF038980 22 1632 0.0 T 14-09-2016 IPR026284 Alpha-2-macroglobulin domain protein, bacteria PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 266 358 4.3E-18 T 14-09-2016 IPR021868 Alpha-2-macroglobulin MG1 domain PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1161 1182 3.8E-5 T 14-09-2016 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 PANTHER PTHR11412 1614 1621 4.2E-233 T 14-09-2016 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 PANTHER PTHR11412 235 628 4.2E-233 T 14-09-2016 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 Pfam PF00207 Alpha-2-macroglobulin family 957 1036 1.9E-4 T 14-09-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 PANTHER PTHR11412:SF104 644 940 4.2E-233 T 14-09-2016 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 PANTHER PTHR11412 644 940 4.2E-233 T 14-09-2016 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 736 882 6.1E-13 T 14-09-2016 IPR011625 Alpha-2-macroglobulin, N-terminal 2 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 SUPERFAMILY SSF48239 1155 1413 5.1E-42 T 14-09-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 SMART SM01360 947 1036 7.5E-16 T 14-09-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 SMART SM01359 735 883 3.6E-33 T 14-09-2016 IPR011625 Alpha-2-macroglobulin, N-terminal 2 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 Pfam PF01835 MG2 domain 365 456 2.7E-22 T 14-09-2016 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 PANTHER PTHR11412:SF104 235 628 4.2E-233 T 14-09-2016 PAJ_RS11895 019be1bda29e6e1986cc520982117f12 1632 Gene3D G3DSA:1.50.10.20 1155 1411 2.5E-32 T 14-09-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 PANTHER PTHR13847:SF148 1 63 6.0E-241 T 14-09-2016 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 PANTHER PTHR13847:SF148 107 433 6.0E-241 T 14-09-2016 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 PANTHER PTHR13847 1 63 6.0E-241 T 14-09-2016 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 PANTHER PTHR13847 107 433 6.0E-241 T 14-09-2016 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 Gene3D G3DSA:3.30.9.10 270 358 1.4E-16 T 14-09-2016 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 Gene3D G3DSA:3.30.9.10 135 189 1.4E-16 T 14-09-2016 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 Gene3D G3DSA:3.50.50.60 108 122 1.5E-47 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 Gene3D G3DSA:3.50.50.60 359 426 1.5E-47 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 Gene3D G3DSA:3.50.50.60 1 55 1.5E-47 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 Gene3D G3DSA:3.50.50.60 190 269 1.5E-47 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 Pfam PF01266 FAD dependent oxidoreductase 2 396 3.9E-70 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 SUPERFAMILY SSF54373 269 359 6.02E-17 T 14-09-2016 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 SUPERFAMILY SSF51905 107 271 6.6E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 SUPERFAMILY SSF51905 1 54 6.6E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 SUPERFAMILY SSF51905 359 421 6.6E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07990 f7bfffc67c4da53ffa873abab4670f44 433 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 51.615 T 14-09-2016 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 UniPathway: UPA00043 PAJ_RS13990 1d9531d80a65de9f2dc14f7ce2cc5de9 381 SUPERFAMILY SSF52518 184 329 2.32E-24 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS13990 1d9531d80a65de9f2dc14f7ce2cc5de9 381 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 232 304 1.1E-13 T 14-09-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PAJ_RS13990 1d9531d80a65de9f2dc14f7ce2cc5de9 381 PANTHER PTHR18968:SF81 132 370 2.0E-39 T 14-09-2016 PAJ_RS13990 1d9531d80a65de9f2dc14f7ce2cc5de9 381 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 171 1.5E-20 T 14-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PAJ_RS13990 1d9531d80a65de9f2dc14f7ce2cc5de9 381 Gene3D G3DSA:3.40.50.970 5 170 3.5E-18 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS13990 1d9531d80a65de9f2dc14f7ce2cc5de9 381 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 244 263 - T 14-09-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PAJ_RS13990 1d9531d80a65de9f2dc14f7ce2cc5de9 381 TIGRFAM TIGR03297 Ppyr-DeCO2ase: phosphonopyruvate decarboxylase 16 370 4.9E-108 T 14-09-2016 IPR017684 Phosphonopyruvate decarboxylase GO:0032923|GO:0033980 KEGG: 00440+4.1.1.82|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7510 PAJ_RS13990 1d9531d80a65de9f2dc14f7ce2cc5de9 381 Gene3D G3DSA:3.40.50.970 184 348 2.7E-23 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS13990 1d9531d80a65de9f2dc14f7ce2cc5de9 381 SUPERFAMILY SSF52518 5 171 4.36E-22 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS13990 1d9531d80a65de9f2dc14f7ce2cc5de9 381 PANTHER PTHR18968 132 370 2.0E-39 T 14-09-2016 PAJ_RS12310 ba8866312e751a4420a4ca362342361f 222 SUPERFAMILY SSF52096 38 204 4.77E-18 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS12310 ba8866312e751a4420a4ca362342361f 222 Pfam PF00574 Clp protease 40 202 4.6E-14 T 14-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PAJ_RS12310 ba8866312e751a4420a4ca362342361f 222 Gene3D G3DSA:3.90.226.10 35 204 7.3E-19 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS20855 4b776165b8377322a747cd6003b48ba2 232 SUPERFAMILY SSF52540 2 221 9.88E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20855 4b776165b8377322a747cd6003b48ba2 232 PANTHER PTHR24220 3 232 1.4E-134 T 14-09-2016 PAJ_RS20855 4b776165b8377322a747cd6003b48ba2 232 Pfam PF00005 ABC transporter 17 161 6.5E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS20855 4b776165b8377322a747cd6003b48ba2 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 1.4E-106 T 14-09-2016 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE PAJ_RS20855 4b776165b8377322a747cd6003b48ba2 232 Gene3D G3DSA:3.40.50.300 1 222 7.1E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20855 4b776165b8377322a747cd6003b48ba2 232 SMART SM00382 26 211 7.5E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS20855 4b776165b8377322a747cd6003b48ba2 232 PANTHER PTHR24220:SF404 3 232 1.4E-134 T 14-09-2016 PAJ_RS21395 5deaeba40a0d53615f6d2d2f35c61d1f 124 SUPERFAMILY SSF55846 2 124 4.84E-49 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS21395 5deaeba40a0d53615f6d2d2f35c61d1f 124 SMART SM00644 1 123 7.6E-31 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS21395 5deaeba40a0d53615f6d2d2f35c61d1f 124 PANTHER PTHR30417 5 121 1.8E-59 T 14-09-2016 PAJ_RS21395 5deaeba40a0d53615f6d2d2f35c61d1f 124 Gene3D G3DSA:3.40.80.10 3 124 1.4E-51 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS21395 5deaeba40a0d53615f6d2d2f35c61d1f 124 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 22 122 7.6E-19 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS21395 5deaeba40a0d53615f6d2d2f35c61d1f 124 PANTHER PTHR30417:SF4 5 121 1.8E-59 T 14-09-2016 PAJ_RS10535 d6c1ecf670620a08c024de03426ee3af 376 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 14-09-2016 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS10535 d6c1ecf670620a08c024de03426ee3af 376 PANTHER PTHR23409:SF23 1 173 1.3E-270 T 14-09-2016 PAJ_RS10535 d6c1ecf670620a08c024de03426ee3af 376 Gene3D G3DSA:1.10.620.20 3 340 1.7E-125 T 14-09-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 PAJ_RS10535 d6c1ecf670620a08c024de03426ee3af 376 PANTHER PTHR23409:SF23 197 376 1.3E-270 T 14-09-2016 PAJ_RS10535 d6c1ecf670620a08c024de03426ee3af 376 Pfam PF00268 Ribonucleotide reductase, small chain 32 332 2.4E-48 T 14-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 PAJ_RS10535 d6c1ecf670620a08c024de03426ee3af 376 SUPERFAMILY SSF47240 3 340 1.44E-113 T 14-09-2016 IPR009078 Ferritin-like superfamily PAJ_RS10535 d6c1ecf670620a08c024de03426ee3af 376 PANTHER PTHR23409 197 376 1.3E-270 T 14-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 PAJ_RS10535 d6c1ecf670620a08c024de03426ee3af 376 PANTHER PTHR23409 1 173 1.3E-270 T 14-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 PAJ_RS12445 b821275c80d1ab6625b16e13a1846929 524 SUPERFAMILY SSF53850 22 518 1.38E-99 T 14-09-2016 PAJ_RS12445 b821275c80d1ab6625b16e13a1846929 524 PIRSF PIRSF002741 6 522 1.1E-64 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS12445 b821275c80d1ab6625b16e13a1846929 524 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 72 439 1.4E-65 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS12445 b821275c80d1ab6625b16e13a1846929 524 Gene3D G3DSA:3.10.105.10 296 491 1.4E-38 T 14-09-2016 PAJ_RS12445 b821275c80d1ab6625b16e13a1846929 524 PANTHER PTHR30290 25 520 6.3E-86 T 14-09-2016 PAJ_RS12445 b821275c80d1ab6625b16e13a1846929 524 Gene3D G3DSA:3.40.190.10 142 295 4.2E-29 T 14-09-2016 PAJ_RS12445 b821275c80d1ab6625b16e13a1846929 524 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 77 99 - T 14-09-2016 IPR023765 Solute-binding protein family 5, conserved site PAJ_RS04130 2afc62251153560edbf2bc6ce26cc487 157 Pfam PF05119 Phage terminase, small subunit 46 143 1.7E-24 T 14-09-2016 IPR006448 Putative phage terminase, small subunit, P27 family PAJ_RS04130 2afc62251153560edbf2bc6ce26cc487 157 TIGRFAM TIGR01558 sm_term_P27: putative phage terminase, small subunit, P27 family 38 152 2.2E-34 T 14-09-2016 IPR006448 Putative phage terminase, small subunit, P27 family PAJ_RS03275 e42c5f29ee3e628eb1e9840972b23f06 248 SMART SM00079 26 245 2.1E-7 T 14-09-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 PAJ_RS03275 e42c5f29ee3e628eb1e9840972b23f06 248 SUPERFAMILY SSF53850 8 246 1.45E-73 T 14-09-2016 PAJ_RS03275 e42c5f29ee3e628eb1e9840972b23f06 248 Gene3D G3DSA:3.40.190.10 103 206 2.1E-32 T 14-09-2016 PAJ_RS03275 e42c5f29ee3e628eb1e9840972b23f06 248 Gene3D G3DSA:3.40.190.10 24 102 4.6E-46 T 14-09-2016 PAJ_RS03275 e42c5f29ee3e628eb1e9840972b23f06 248 Gene3D G3DSA:3.40.190.10 207 246 4.6E-46 T 14-09-2016 PAJ_RS03275 e42c5f29ee3e628eb1e9840972b23f06 248 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS03275 e42c5f29ee3e628eb1e9840972b23f06 248 SMART SM00062 26 246 9.1E-70 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS03275 e42c5f29ee3e628eb1e9840972b23f06 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 244 2.6E-69 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS03275 e42c5f29ee3e628eb1e9840972b23f06 248 PANTHER PTHR18966 25 248 7.9E-59 T 14-09-2016 PAJ_RS05225 dd56a3fc674481b0e9725e1619d983f1 173 SUPERFAMILY SSF49401 28 172 9.94E-33 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS05225 dd56a3fc674481b0e9725e1619d983f1 173 Pfam PF00419 Fimbrial protein 30 172 9.8E-18 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS05225 dd56a3fc674481b0e9725e1619d983f1 173 PANTHER PTHR33420 2 173 2.1E-40 T 14-09-2016 PAJ_RS05225 dd56a3fc674481b0e9725e1619d983f1 173 Gene3D G3DSA:2.60.40.1090 26 172 7.9E-36 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS14785 79042c10f2b3bd6228c2b6507fa9e800 75 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 33 64 4.0E-12 T 14-09-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 PAJ_RS14785 79042c10f2b3bd6228c2b6507fa9e800 75 PANTHER PTHR38777 1 75 6.4E-18 T 14-09-2016 PAJ_RS14785 79042c10f2b3bd6228c2b6507fa9e800 75 SUPERFAMILY SSF57716 34 69 3.85E-7 T 14-09-2016 PAJ_RS14785 79042c10f2b3bd6228c2b6507fa9e800 75 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 3 64 4.7E-20 T 14-09-2016 IPR012783 Zinc finger, C4 DksA/TraR-type PAJ_RS14785 79042c10f2b3bd6228c2b6507fa9e800 75 PANTHER PTHR38777:SF1 1 75 6.4E-18 T 14-09-2016 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 Gene3D G3DSA:3.30.460.10 77 172 2.7E-7 T 14-09-2016 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 SUPERFAMILY SSF55021 697 768 1.42E-9 T 14-09-2016 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 Gene3D G3DSA:3.30.70.260 808 868 8.4E-8 T 14-09-2016 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 Gene3D G3DSA:3.30.70.260 700 766 1.5E-4 T 14-09-2016 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 SUPERFAMILY SSF109604 436 624 1.57E-13 T 14-09-2016 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 882 344.353 T 14-09-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 Pfam PF01966 HD domain 460 593 6.9E-17 T 14-09-2016 IPR006674 HD domain PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 PANTHER PTHR13734:SF45 101 696 1.2E-156 T 14-09-2016 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 39 876 8.6E-302 T 14-09-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 PANTHER PTHR13734 101 696 1.2E-156 T 14-09-2016 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 Gene3D G3DSA:1.10.3210.10 430 622 2.4E-29 T 14-09-2016 IPR006674 HD domain PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 SUPERFAMILY SSF81301 37 180 4.64E-22 T 14-09-2016 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 SMART SM00471 456 603 1.6E-12 T 14-09-2016 IPR003607 HD/PDEase domain PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 PIRSF PIRSF006288 14 882 0.0 T 14-09-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 Pfam PF01909 Nucleotidyltransferase domain 66 114 2.5E-7 T 14-09-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 Pfam PF08335 GlnD PII-uridylyltransferase 184 323 2.0E-37 T 14-09-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 Pfam PF01842 ACT domain 701 750 6.1E-8 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 Pfam PF01842 ACT domain 808 868 2.1E-8 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 SUPERFAMILY SSF81593 204 320 8.63E-10 T 14-09-2016 PAJ_RS00680 dc974f73e308c26d2e3fe9011e411a69 882 SUPERFAMILY SSF55021 805 868 5.73E-9 T 14-09-2016 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 461 39.563 T 14-09-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 Gene3D G3DSA:1.20.120.640 306 392 3.9E-28 T 14-09-2016 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 1.1E-30 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 1.1E-30 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 1.1E-30 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 1.1E-30 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 PANTHER PTHR10890 1 460 7.9E-252 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 SUPERFAMILY SSF47323 316 460 4.84E-41 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 SUPERFAMILY SSF52374 1 313 1.54E-102 T 14-09-2016 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 460 1.0E-193 T 14-09-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 Pfam PF09190 DALR domain 341 402 3.3E-26 T 14-09-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 Gene3D G3DSA:3.40.50.620 19 304 5.3E-114 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 1.2E-142 T 14-09-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 PAJ_RS02015 1e2f1f1b88f630a3f97c0321c5198af6 461 SMART SM00840 341 402 8.5E-30 T 14-09-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 Gene3D G3DSA:1.10.274.10 274 376 9.7E-30 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 SUPERFAMILY SSF55594 157 241 9.55E-19 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 Pfam PF03610 PTS system fructose IIA component 4 120 1.3E-24 T 14-09-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 Pfam PF00381 PTS HPr component phosphorylation site 158 235 6.0E-17 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 Gene3D G3DSA:3.30.1340.10 157 241 7.2E-23 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 SUPERFAMILY SSF53062 1 128 4.19E-29 T 14-09-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 2 127 2.4E-38 T 14-09-2016 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 167 174 - T 14-09-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 Gene3D G3DSA:3.50.30.10 377 470 3.5E-18 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 157 234 1.6E-14 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 SUPERFAMILY SSF52009 357 466 5.49E-18 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 SUPERFAMILY SSF47831 274 387 2.09E-28 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 Gene3D G3DSA:3.40.50.510 1 131 1.3E-44 T 14-09-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 PANTHER PTHR22931 278 464 2.0E-37 T 14-09-2016 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 Pfam PF00391 PEP-utilising enzyme, mobile domain 398 464 8.1E-12 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 Pfam PF05524 PEP-utilising enzyme, N-terminal 260 370 1.4E-19 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PAJ_RS01260 7a79e1d7e590e531b41066a67c0b5731 473 PANTHER PTHR22931:SF28 278 464 2.0E-37 T 14-09-2016 PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 SUPERFAMILY SSF53822 59 297 3.83E-18 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 PANTHER PTHR30146 1 312 1.3E-43 T 14-09-2016 PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 SUPERFAMILY SSF47413 2 59 5.63E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.0E-5 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.0E-5 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 Gene3D G3DSA:1.10.260.40 3 54 2.3E-22 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 Gene3D G3DSA:3.40.50.2300 164 297 1.3E-16 T 14-09-2016 PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 Pfam PF13377 Periplasmic binding protein-like domain 162 296 4.9E-10 T 14-09-2016 PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.5E-17 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 Gene3D G3DSA:3.40.50.2300 55 163 3.0E-16 T 14-09-2016 PAJ_RS17845 196afa3cd9859d94022f6b9f552e262f 318 SMART SM00354 1 71 4.5E-24 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS10745 f8ecd7ca510dd60d58b0f532c2d99bd6 316 PANTHER PTHR34294:SF2 1 316 1.2E-115 T 14-09-2016 PAJ_RS10745 f8ecd7ca510dd60d58b0f532c2d99bd6 316 Gene3D G3DSA:3.40.50.1360 56 314 6.3E-70 T 14-09-2016 PAJ_RS10745 f8ecd7ca510dd60d58b0f532c2d99bd6 316 Pfam PF04198 Putative sugar-binding domain 58 314 5.9E-67 T 14-09-2016 IPR007324 Sugar-binding domain, putative GO:0030246 PAJ_RS10745 f8ecd7ca510dd60d58b0f532c2d99bd6 316 PANTHER PTHR34294 1 316 1.2E-115 T 14-09-2016 PAJ_RS10745 f8ecd7ca510dd60d58b0f532c2d99bd6 316 SUPERFAMILY SSF100950 58 314 4.52E-62 T 14-09-2016 PAJ_RS10745 f8ecd7ca510dd60d58b0f532c2d99bd6 316 Gene3D G3DSA:1.10.10.10 21 55 2.3E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10745 f8ecd7ca510dd60d58b0f532c2d99bd6 316 Pfam PF13384 Homeodomain-like domain 9 49 8.2E-6 T 14-09-2016 PAJ_RS14975 befd540e1573d416394599571ad82b2b 496 Pfam PF08666 SAF domain 11 80 3.0E-8 T 14-09-2016 IPR013974 SAF domain PAJ_RS14975 befd540e1573d416394599571ad82b2b 496 PANTHER PTHR30536 1 496 5.2E-263 T 14-09-2016 PAJ_RS14975 befd540e1573d416394599571ad82b2b 496 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 108 495 4.0E-154 T 14-09-2016 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 PAJ_RS14975 befd540e1573d416394599571ad82b2b 496 PANTHER PTHR30536:SF5 1 496 5.2E-263 T 14-09-2016 PAJ_RS14975 befd540e1573d416394599571ad82b2b 496 SMART SM00858 11 82 3.8E-11 T 14-09-2016 IPR013974 SAF domain PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 Gene3D G3DSA:3.10.580.10 201 325 4.6E-39 T 14-09-2016 PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 318 3.7E-123 T 14-09-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 Pfam PF00571 CBS domain 274 325 1.9E-6 T 14-09-2016 IPR000644 CBS domain PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 Pfam PF00571 CBS domain 206 261 4.0E-6 T 14-09-2016 IPR000644 CBS domain PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 PANTHER PTHR11911 180 325 2.8E-41 T 14-09-2016 PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 PANTHER PTHR11911:SF90 180 325 2.8E-41 T 14-09-2016 PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 SUPERFAMILY SSF53697 14 326 6.01E-70 T 14-09-2016 PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 Pfam PF01380 SIS domain 46 176 7.8E-35 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 SMART SM00116 280 327 1.0 T 14-09-2016 IPR000644 CBS domain PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 SMART SM00116 215 263 13.0 T 14-09-2016 IPR000644 CBS domain PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 Gene3D G3DSA:3.40.50.10490 17 200 7.7E-53 T 14-09-2016 PAJ_RS19770 5c6e6e7215d18e9557ce4b84f6ebd1f8 328 PIRSF PIRSF004692 1 328 2.5E-135 T 14-09-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 PAJ_RS05010 898ddd52d866cdc056392948bf2569f4 372 Gene3D G3DSA:3.20.20.70 1 370 3.4E-128 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS05010 898ddd52d866cdc056392948bf2569f4 372 PANTHER PTHR22893:SF24 1 370 1.8E-173 T 14-09-2016 PAJ_RS05010 898ddd52d866cdc056392948bf2569f4 372 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 349 1.0E-85 T 14-09-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PAJ_RS05010 898ddd52d866cdc056392948bf2569f4 372 PANTHER PTHR22893 1 370 1.8E-173 T 14-09-2016 PAJ_RS05010 898ddd52d866cdc056392948bf2569f4 372 SUPERFAMILY SSF51395 1 371 8.25E-117 T 14-09-2016 PAJ_RS11160 ca4fc850dd6d8fccbc194948ad7c4fca 342 SUPERFAMILY SSF111369 49 130 5.1E-9 T 14-09-2016 PAJ_RS11160 ca4fc850dd6d8fccbc194948ad7c4fca 342 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 289 1.1E-16 T 14-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PAJ_RS11160 ca4fc850dd6d8fccbc194948ad7c4fca 342 SUPERFAMILY SSF111369 182 281 7.72E-15 T 14-09-2016 PAJ_RS11160 ca4fc850dd6d8fccbc194948ad7c4fca 342 Pfam PF00529 HlyD membrane-fusion protein of T1SS 127 336 1.0E-11 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS11160 ca4fc850dd6d8fccbc194948ad7c4fca 342 PANTHER PTHR30386:SF7 7 342 6.2E-95 T 14-09-2016 PAJ_RS11160 ca4fc850dd6d8fccbc194948ad7c4fca 342 Gene3D G3DSA:2.40.50.100 49 79 1.5E-17 T 14-09-2016 PAJ_RS11160 ca4fc850dd6d8fccbc194948ad7c4fca 342 Gene3D G3DSA:2.40.50.100 210 243 1.5E-17 T 14-09-2016 PAJ_RS11160 ca4fc850dd6d8fccbc194948ad7c4fca 342 PANTHER PTHR30386 7 342 6.2E-95 T 14-09-2016 PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 52 166 3.9E-31 T 14-09-2016 IPR013856 Peptidase M4 domain GO:0004222 PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 PANTHER PTHR33794 46 336 9.5E-116 T 14-09-2016 PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 Gene3D G3DSA:1.10.390.10 171 336 8.8E-50 T 14-09-2016 PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 169 336 3.0E-49 T 14-09-2016 IPR001570 Peptidase M4, C-terminal GO:0004222 PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 SUPERFAMILY SSF55486 57 336 1.3E-82 T 14-09-2016 PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 Pfam PF16485 Protealysin propeptide 4 43 6.8E-18 T 14-09-2016 IPR032475 Protealysin, N-terminal propeptide PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 Gene3D G3DSA:3.10.170.10 40 170 1.1E-45 T 14-09-2016 IPR013856 Peptidase M4 domain GO:0004222 PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 157 173 1.9E-29 T 14-09-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 121 141 1.9E-29 T 14-09-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 178 189 1.9E-29 T 14-09-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 PAJ_RS11825 37d83580f25c397e4678b9d59e926618 337 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 259 275 1.9E-29 T 14-09-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 PAJ_RS14390 63631323a2799caa93008d8cba6f55d1 630 Gene3D G3DSA:3.20.20.150 1 264 5.3E-74 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS14390 63631323a2799caa93008d8cba6f55d1 630 Pfam PF01261 Xylose isomerase-like TIM barrel 18 217 9.2E-36 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS14390 63631323a2799caa93008d8cba6f55d1 630 SUPERFAMILY SSF51658 1 268 7.32E-73 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS14390 63631323a2799caa93008d8cba6f55d1 630 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 301 432 8.2E-23 T 14-09-2016 PAJ_RS14390 63631323a2799caa93008d8cba6f55d1 630 Gene3D G3DSA:3.10.180.10 295 435 1.6E-27 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS14390 63631323a2799caa93008d8cba6f55d1 630 SUPERFAMILY SSF54593 293 627 8.09E-58 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS14390 63631323a2799caa93008d8cba6f55d1 630 PANTHER PTHR12110 1 275 1.0E-77 T 14-09-2016 PAJ_RS14390 63631323a2799caa93008d8cba6f55d1 630 Gene3D G3DSA:3.10.180.10 444 629 1.6E-42 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS14390 63631323a2799caa93008d8cba6f55d1 630 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 447 587 2.2E-5 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PAJ_RS14390 63631323a2799caa93008d8cba6f55d1 630 PANTHER PTHR12110:SF14 1 275 1.0E-77 T 14-09-2016 PAJ_RS06355 93d388d76bd992829f19455f94b55a9f 348 Pfam PF01636 Phosphotransferase enzyme family 41 268 1.7E-27 T 14-09-2016 IPR002575 Aminoglycoside phosphotransferase PAJ_RS06355 93d388d76bd992829f19455f94b55a9f 348 PANTHER PTHR21064 3 338 7.9E-62 T 14-09-2016 PAJ_RS06355 93d388d76bd992829f19455f94b55a9f 348 Gene3D G3DSA:3.90.1200.10 131 322 7.8E-27 T 14-09-2016 PAJ_RS06355 93d388d76bd992829f19455f94b55a9f 348 PANTHER PTHR21064:SF1 3 338 7.9E-62 T 14-09-2016 PAJ_RS06355 93d388d76bd992829f19455f94b55a9f 348 SUPERFAMILY SSF56112 17 331 2.62E-50 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS04875 3592868533eaf4afff78aee6103d25dd 210 Pfam PF01464 Transglycosylase SLT domain 51 172 2.8E-26 T 14-09-2016 IPR008258 Transglycosylase SLT domain 1 PAJ_RS04875 3592868533eaf4afff78aee6103d25dd 210 SUPERFAMILY SSF53955 50 207 1.07E-25 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS04875 3592868533eaf4afff78aee6103d25dd 210 Gene3D G3DSA:1.10.530.10 49 207 4.8E-31 T 14-09-2016 PAJ_RS04875 3592868533eaf4afff78aee6103d25dd 210 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 66 94 - T 14-09-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 PAJ_RS04875 3592868533eaf4afff78aee6103d25dd 210 PANTHER PTHR21666 29 210 1.1E-85 T 14-09-2016 PAJ_RS04875 3592868533eaf4afff78aee6103d25dd 210 PANTHER PTHR21666:SF216 29 210 1.1E-85 T 14-09-2016 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 PANTHER PTHR30524 1 381 3.8E-206 T 14-09-2016 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 148 371 1.9E-68 T 14-09-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 150 162 - T 14-09-2016 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 123 2.7E-24 T 14-09-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 Gene3D G3DSA:3.40.50.720 2 202 1.9E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 PANTHER PTHR30524:SF0 1 381 3.8E-206 T 14-09-2016 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 SUPERFAMILY SSF51735 1 203 1.44E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 Gene3D G3DSA:1.10.1040.10 203 381 6.9E-48 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 9.8E-18 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 PRINTS PR00084 Mannitol dehydrogenase signature 114 127 9.8E-18 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 PRINTS PR00084 Mannitol dehydrogenase signature 170 185 9.8E-18 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 PRINTS PR00084 Mannitol dehydrogenase signature 150 163 9.8E-18 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 378 41.13 T 14-09-2016 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS18075 c3e12b07feaf1be39bf7ba25077cab6e 382 SUPERFAMILY SSF48179 204 381 3.74E-45 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS15900 a6542da8542e38a2c15e175559770add 95 PANTHER PTHR37526 1 95 6.5E-27 T 14-09-2016 PAJ_RS15900 a6542da8542e38a2c15e175559770add 95 SUPERFAMILY SSF75169 1 95 1.19E-25 T 14-09-2016 IPR027396 DsrEFH-like PAJ_RS15900 a6542da8542e38a2c15e175559770add 95 Hamap MF_01564 Protein TusB [tusB]. 1 95 25.418 T 14-09-2016 IPR023526 Sulphur relay, TusB GO:0002143|GO:0005737 PAJ_RS15900 a6542da8542e38a2c15e175559770add 95 Gene3D G3DSA:3.40.1260.10 1 94 6.4E-28 T 14-09-2016 IPR027396 DsrEFH-like PAJ_RS15900 a6542da8542e38a2c15e175559770add 95 Pfam PF04077 DsrH like protein 7 92 1.1E-26 T 14-09-2016 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 PAJ_RS15900 a6542da8542e38a2c15e175559770add 95 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 95 1.1E-28 T 14-09-2016 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 PAJ_RS02850 c30ce9b5bca5a7c1f44cf44c6808b07c 353 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 29 341 3.1E-121 T 14-09-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 PAJ_RS02850 c30ce9b5bca5a7c1f44cf44c6808b07c 353 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 70.287 T 14-09-2016 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 PAJ_RS02850 c30ce9b5bca5a7c1f44cf44c6808b07c 353 PANTHER PTHR30573 1 352 2.3E-165 T 14-09-2016 PAJ_RS02850 c30ce9b5bca5a7c1f44cf44c6808b07c 353 Pfam PF02445 Quinolinate synthetase A protein 31 339 1.3E-100 T 14-09-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 PAJ_RS02850 c30ce9b5bca5a7c1f44cf44c6808b07c 353 SUPERFAMILY SSF142754 29 340 6.67E-105 T 14-09-2016 PAJ_RS15090 23c93ad12ce818e273141fc48c0d2761 195 PANTHER PTHR30390 1 195 2.6E-128 T 14-09-2016 PAJ_RS15090 23c93ad12ce818e273141fc48c0d2761 195 PANTHER PTHR30390:SF5 1 195 2.6E-128 T 14-09-2016 PAJ_RS15090 23c93ad12ce818e273141fc48c0d2761 195 Hamap MF_01157 DnaA initiator-associating protein DiaA [diaA]. 1 195 58.172 T 14-09-2016 IPR023070 DnaA initiator-associating protein PAJ_RS15090 23c93ad12ce818e273141fc48c0d2761 195 SUPERFAMILY SSF53697 2 191 2.63E-51 T 14-09-2016 PAJ_RS15090 23c93ad12ce818e273141fc48c0d2761 195 Gene3D G3DSA:3.40.50.10490 2 191 2.0E-55 T 14-09-2016 PAJ_RS15090 23c93ad12ce818e273141fc48c0d2761 195 Pfam PF13580 SIS domain 9 144 5.0E-33 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS15050 75cf87aa4cb0bfa5c6accf2fa91bce06 324 Gene3D G3DSA:3.40.30.10 42 179 3.0E-20 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS15050 75cf87aa4cb0bfa5c6accf2fa91bce06 324 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 158 1.3E-22 T 14-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PAJ_RS15050 75cf87aa4cb0bfa5c6accf2fa91bce06 324 PIRSF PIRSF015753 5 324 1.7E-129 T 14-09-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 PAJ_RS15050 75cf87aa4cb0bfa5c6accf2fa91bce06 324 SUPERFAMILY SSF47616 171 323 1.28E-34 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS15050 75cf87aa4cb0bfa5c6accf2fa91bce06 324 PANTHER PTHR32419 1 323 4.9E-174 T 14-09-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 PAJ_RS15050 75cf87aa4cb0bfa5c6accf2fa91bce06 324 SUPERFAMILY SSF52833 126 162 6.27E-16 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS15050 75cf87aa4cb0bfa5c6accf2fa91bce06 324 SUPERFAMILY SSF52833 42 99 6.27E-16 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS15050 75cf87aa4cb0bfa5c6accf2fa91bce06 324 Pfam PF13410 Glutathione S-transferase, C-terminal domain 205 259 1.0E-10 T 14-09-2016 PAJ_RS15050 75cf87aa4cb0bfa5c6accf2fa91bce06 324 Gene3D G3DSA:1.20.1050.10 180 289 1.9E-27 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS01750 75d6bb9c525f56061faafba9bf2a7067 231 PIRSF PIRSF006293 1 225 2.0E-83 T 14-09-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 PAJ_RS01750 75d6bb9c525f56061faafba9bf2a7067 231 Pfam PF06508 Queuosine biosynthesis protein QueC 3 213 1.6E-82 T 14-09-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 PAJ_RS01750 75d6bb9c525f56061faafba9bf2a7067 231 PANTHER PTHR11587:SF3 1 224 2.9E-103 T 14-09-2016 PAJ_RS01750 75d6bb9c525f56061faafba9bf2a7067 231 Gene3D G3DSA:3.40.50.620 1 213 3.1E-83 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS01750 75d6bb9c525f56061faafba9bf2a7067 231 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 219 50.484 T 14-09-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 PAJ_RS01750 75d6bb9c525f56061faafba9bf2a7067 231 SUPERFAMILY SSF52402 1 215 7.5E-69 T 14-09-2016 PAJ_RS01750 75d6bb9c525f56061faafba9bf2a7067 231 PANTHER PTHR11587 1 224 2.9E-103 T 14-09-2016 PAJ_RS01750 75d6bb9c525f56061faafba9bf2a7067 231 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 206 1.5E-84 T 14-09-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 PAJ_RS04685 6dcb2c0c9cea686d3b17ae37500c796e 222 Gene3D G3DSA:1.10.10.10 133 221 4.8E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04685 6dcb2c0c9cea686d3b17ae37500c796e 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 2.8E-20 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS04685 6dcb2c0c9cea686d3b17ae37500c796e 222 SUPERFAMILY SSF52172 1 173 5.12E-39 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS04685 6dcb2c0c9cea686d3b17ae37500c796e 222 Pfam PF00072 Response regulator receiver domain 3 112 1.2E-23 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS04685 6dcb2c0c9cea686d3b17ae37500c796e 222 PANTHER PTHR26402:SF537 1 221 2.5E-147 T 14-09-2016 PAJ_RS04685 6dcb2c0c9cea686d3b17ae37500c796e 222 PANTHER PTHR26402 1 221 2.5E-147 T 14-09-2016 PAJ_RS04685 6dcb2c0c9cea686d3b17ae37500c796e 222 Gene3D G3DSA:3.40.50.2300 1 132 1.6E-36 T 14-09-2016 PAJ_RS04685 6dcb2c0c9cea686d3b17ae37500c796e 222 SMART SM00862 145 220 1.7E-20 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS04685 6dcb2c0c9cea686d3b17ae37500c796e 222 SMART SM00448 1 112 5.3E-39 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 Pfam PF05199 GMC oxidoreductase 449 573 1.4E-21 T 14-09-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 Pfam PF00732 GMC oxidoreductase 202 348 5.5E-10 T 14-09-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 SUPERFAMILY SSF54373 432 498 8.24E-10 T 14-09-2016 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 Gene3D G3DSA:3.50.50.60 515 583 9.4E-59 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 Gene3D G3DSA:3.50.50.60 457 470 9.4E-59 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 Gene3D G3DSA:3.50.50.60 7 158 9.4E-59 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 Gene3D G3DSA:3.50.50.60 246 352 9.4E-59 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 PANTHER PTHR11552 4 220 2.8E-166 T 14-09-2016 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 PANTHER PTHR11552 236 589 2.8E-166 T 14-09-2016 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 PANTHER PTHR11552:SF139 4 220 2.8E-166 T 14-09-2016 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 PANTHER PTHR11552:SF139 236 589 2.8E-166 T 14-09-2016 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 SUPERFAMILY SSF51905 524 585 2.01E-50 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19145 8ef10345db432f5daf8e63aafdab68e5 594 SUPERFAMILY SSF51905 7 336 2.01E-50 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 SUPERFAMILY SSF50814 14 173 3.05E-51 T 14-09-2016 IPR011038 Calycin-like PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 ProSitePatterns PS00213 Lipocalin signature. 32 45 - T 14-09-2016 IPR022272 Lipocalin family conserved site PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 PRINTS PR01171 Bacterial lipocalin signature 33 47 2.2E-41 T 14-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 PRINTS PR01171 Bacterial lipocalin signature 103 117 2.2E-41 T 14-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 PRINTS PR01171 Bacterial lipocalin signature 135 146 2.2E-41 T 14-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 PRINTS PR01171 Bacterial lipocalin signature 50 66 2.2E-41 T 14-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 PRINTS PR01171 Bacterial lipocalin signature 120 128 2.2E-41 T 14-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 PRINTS PR01171 Bacterial lipocalin signature 69 78 2.2E-41 T 14-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 PRINTS PR01171 Bacterial lipocalin signature 162 172 2.2E-41 T 14-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 PIRSF PIRSF036893 2 174 1.2E-50 T 14-09-2016 IPR022271 Lipocalin, ApoD type PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 Pfam PF08212 Lipocalin-like domain 34 173 1.2E-47 T 14-09-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 PANTHER PTHR10612 24 173 1.2E-48 T 14-09-2016 PAJ_RS19655 a496de5e31e8dbb1ea0940d49f5188d4 174 Gene3D G3DSA:2.40.128.20 8 173 8.8E-59 T 14-09-2016 IPR012674 Calycin PAJ_RS01070 5a069757d40b032032ef967ee3a2c006 204 SUPERFAMILY SSF53639 8 201 4.51E-42 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS01070 5a069757d40b032032ef967ee3a2c006 204 PANTHER PTHR10640 21 195 4.5E-38 T 14-09-2016 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00904 PAJ_RS01070 5a069757d40b032032ef967ee3a2c006 204 SMART SM01007 8 196 1.8E-49 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS01070 5a069757d40b032032ef967ee3a2c006 204 Gene3D G3DSA:3.40.225.10 7 200 1.1E-44 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS01070 5a069757d40b032032ef967ee3a2c006 204 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 10 199 2.2E-65 T 14-09-2016 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00904 PAJ_RS01070 5a069757d40b032032ef967ee3a2c006 204 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 194 4.6E-40 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS01070 5a069757d40b032032ef967ee3a2c006 204 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 204 117.951 T 14-09-2016 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00904 PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 Gene3D G3DSA:3.40.190.10 176 260 6.1E-13 T 14-09-2016 PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 SUPERFAMILY SSF46785 5 111 2.42E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.9E-20 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.0E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.0E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.0E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 Gene3D G3DSA:3.40.190.10 93 175 2.0E-13 T 14-09-2016 PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 Pfam PF03466 LysR substrate binding domain 90 295 7.7E-32 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 PANTHER PTHR30126 1 308 2.4E-53 T 14-09-2016 PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 SUPERFAMILY SSF53850 92 298 2.76E-33 T 14-09-2016 PAJ_RS13760 6609cf6fac7afe40b84c8739f8aa20b2 308 Gene3D G3DSA:1.10.10.10 4 85 4.5E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11665 3cfda3d2ae88fa7c86b559cdceebb374 257 PANTHER PTHR24220 12 256 2.7E-127 T 14-09-2016 PAJ_RS11665 3cfda3d2ae88fa7c86b559cdceebb374 257 Gene3D G3DSA:3.40.50.300 10 251 8.1E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11665 3cfda3d2ae88fa7c86b559cdceebb374 257 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 11 257 1.4E-117 T 14-09-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 PAJ_RS11665 3cfda3d2ae88fa7c86b559cdceebb374 257 Pfam PF00005 ABC transporter 26 182 3.0E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS11665 3cfda3d2ae88fa7c86b559cdceebb374 257 SMART SM00382 35 246 3.0E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS11665 3cfda3d2ae88fa7c86b559cdceebb374 257 PANTHER PTHR24220:SF585 12 256 2.7E-127 T 14-09-2016 PAJ_RS11665 3cfda3d2ae88fa7c86b559cdceebb374 257 SUPERFAMILY SSF52540 7 246 1.27E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18320 064e1857c8d7a11f75683726e2993c1a 416 Hamap MF_02024 Lipid III flippase [wzxE]. 1 416 39.368 T 14-09-2016 IPR032896 Lipid III flippase WzxE GO:0005886|GO:0009246 UniPathway: UPA00566 PAJ_RS18320 064e1857c8d7a11f75683726e2993c1a 416 PANTHER PTHR30250 3 416 2.4E-141 T 14-09-2016 PAJ_RS18320 064e1857c8d7a11f75683726e2993c1a 416 Pfam PF01943 Polysaccharide biosynthesis protein 4 283 3.0E-9 T 14-09-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 PAJ_RS18320 064e1857c8d7a11f75683726e2993c1a 416 PANTHER PTHR30250:SF9 3 416 2.4E-141 T 14-09-2016 PAJ_RS18220 e88d8b024e67b569ab62285876b8b8e4 502 PANTHER PTHR11851:SF136 1 455 1.1E-58 T 14-09-2016 PAJ_RS18220 e88d8b024e67b569ab62285876b8b8e4 502 SUPERFAMILY SSF63411 29 239 1.78E-22 T 14-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PAJ_RS18220 e88d8b024e67b569ab62285876b8b8e4 502 SUPERFAMILY SSF63411 340 455 1.28E-7 T 14-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PAJ_RS18220 e88d8b024e67b569ab62285876b8b8e4 502 PANTHER PTHR11851 1 455 1.1E-58 T 14-09-2016 PAJ_RS18220 e88d8b024e67b569ab62285876b8b8e4 502 Gene3D G3DSA:3.30.830.10 320 383 5.6E-4 T 14-09-2016 IPR011237 Peptidase M16 domain GO:0046872 PAJ_RS18220 e88d8b024e67b569ab62285876b8b8e4 502 Gene3D G3DSA:3.30.830.10 25 251 4.2E-18 T 14-09-2016 IPR011237 Peptidase M16 domain GO:0046872 PAJ_RS18220 e88d8b024e67b569ab62285876b8b8e4 502 Pfam PF00675 Insulinase (Peptidase family M16) 51 158 2.0E-5 T 14-09-2016 IPR011765 Peptidase M16, N-terminal PAJ_RS18220 e88d8b024e67b569ab62285876b8b8e4 502 Pfam PF05193 Peptidase M16 inactive domain 200 377 2.0E-16 T 14-09-2016 IPR007863 Peptidase M16, C-terminal PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 Gene3D G3DSA:1.10.287.950 294 498 4.1E-62 T 14-09-2016 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 339 525 4.2E-61 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 SUPERFAMILY SSF47170 39 189 8.63E-11 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 7.2E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 17 42 7.2E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 300 329 7.2E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 7.2E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 454 483 7.2E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 SUPERFAMILY SSF58104 246 533 1.44E-75 T 14-09-2016 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 304 326 - T 14-09-2016 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 PANTHER PTHR32089 53 529 7.0E-208 T 14-09-2016 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 Pfam PF02203 Tar ligand binding domain homologue 14 179 5.6E-20 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 SMART SM00283 279 526 1.1E-85 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS04430 10dae7d8b303c4ddc96963188e8e5b7a 563 PANTHER PTHR32089:SF35 53 529 7.0E-208 T 14-09-2016 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 SUPERFAMILY SSF52964 29 162 1.7E-41 T 14-09-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 Pfam PF04052 TolB amino-terminal domain 24 123 6.5E-34 T 14-09-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 PANTHER PTHR11731 161 429 3.4E-127 T 14-09-2016 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 Pfam PF07676 WD40-like Beta Propeller Repeat 238 273 1.7E-9 T 14-09-2016 IPR011659 WD40-like Beta Propeller PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 Pfam PF07676 WD40-like Beta Propeller Repeat 282 316 7.2E-10 T 14-09-2016 IPR011659 WD40-like Beta Propeller PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 Pfam PF07676 WD40-like Beta Propeller Repeat 376 399 0.027 T 14-09-2016 IPR011659 WD40-like Beta Propeller PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 Pfam PF07676 WD40-like Beta Propeller Repeat 200 224 2.0E-4 T 14-09-2016 IPR011659 WD40-like Beta Propeller PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 PANTHER PTHR11731 1 122 3.4E-127 T 14-09-2016 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 Gene3D G3DSA:2.130.10.10 154 429 7.8E-73 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 Gene3D G3DSA:3.40.50.10070 23 153 1.6E-53 T 14-09-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 Hamap MF_00671 Protein TolB [tolB]. 5 427 34.053 T 14-09-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 SUPERFAMILY SSF69304 157 429 2.75E-53 T 14-09-2016 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 PANTHER PTHR11731:SF123 1 122 3.4E-127 T 14-09-2016 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 PANTHER PTHR11731:SF123 161 429 3.4E-127 T 14-09-2016 PAJ_RS02790 cc79e95d498bc66dfeb7e7d52572403e 431 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 16 428 1.5E-155 T 14-09-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 PAJ_RS14290 42ef87631187c9c947ad6a4c13de9ee3 437 PIRSF PIRSF000337 1 437 1.9E-150 T 14-09-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PAJ_RS14290 42ef87631187c9c947ad6a4c13de9ee3 437 Pfam PF00296 Luciferase-like monooxygenase 19 378 3.3E-69 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS14290 42ef87631187c9c947ad6a4c13de9ee3 437 Gene3D G3DSA:3.20.20.30 345 430 5.7E-134 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS14290 42ef87631187c9c947ad6a4c13de9ee3 437 Gene3D G3DSA:3.20.20.30 2 304 5.7E-134 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS14290 42ef87631187c9c947ad6a4c13de9ee3 437 PANTHER PTHR30011:SF22 1 434 3.6E-222 T 14-09-2016 PAJ_RS14290 42ef87631187c9c947ad6a4c13de9ee3 437 PANTHER PTHR30011 1 434 3.6E-222 T 14-09-2016 PAJ_RS14290 42ef87631187c9c947ad6a4c13de9ee3 437 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 8 423 1.9E-169 T 14-09-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PAJ_RS14290 42ef87631187c9c947ad6a4c13de9ee3 437 SUPERFAMILY SSF51679 3 430 7.65E-133 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 SMART SM00487 265 459 7.3E-28 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 Pfam PF00270 DEAD/DEAH box helicase 293 431 2.9E-18 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 SUPERFAMILY SSF52540 205 453 1.9E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 Gene3D G3DSA:3.40.50.300 255 453 3.2E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 SMART SM00490 504 588 2.7E-21 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 Gene3D G3DSA:2.40.50.140 47 140 1.1E-29 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 PANTHER PTHR24031:SF249 299 602 2.7E-127 T 14-09-2016 PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 PANTHER PTHR24031:SF249 654 685 2.7E-127 T 14-09-2016 PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 PANTHER PTHR24031 259 282 2.7E-127 T 14-09-2016 PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 PANTHER PTHR24031 654 685 2.7E-127 T 14-09-2016 PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 Pfam PF17191 RecG wedge domain 14 172 2.6E-19 T 14-09-2016 IPR033454 RecG, wedge domain PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 SUPERFAMILY SSF52540 292 342 9.59E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 SUPERFAMILY SSF52540 507 652 9.59E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 PANTHER PTHR24031 299 602 2.7E-127 T 14-09-2016 PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 Gene3D G3DSA:1.10.150.20 5 37 2.6E-5 T 14-09-2016 PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 Gene3D G3DSA:3.40.50.300 454 637 1.6E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 Pfam PF00271 Helicase conserved C-terminal domain 473 587 1.7E-18 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 28 663 1.2E-240 T 14-09-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 PANTHER PTHR24031:SF249 259 282 2.7E-127 T 14-09-2016 PAJ_RS17410 74dfe621df270170c5ed8a8b1b388836 692 SUPERFAMILY SSF50249 9 176 4.8E-42 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 Gene3D G3DSA:1.10.8.60 500 584 2.7E-33 T 14-09-2016 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 Gene3D G3DSA:3.30.230.10 590 771 1.1E-77 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 5.9E-97 T 14-09-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 SUPERFAMILY SSF52540 313 587 2.11E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 SUPERFAMILY SSF88697 10 201 7.21E-51 T 14-09-2016 IPR015947 PUA-like domain PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 771 0.0 T 14-09-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 SMART SM00382 348 492 5.3E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 1.0E-56 T 14-09-2016 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 1.0E-56 T 14-09-2016 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 1.0E-56 T 14-09-2016 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 1.0E-56 T 14-09-2016 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 1.0E-56 T 14-09-2016 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 PANTHER PTHR10046:SF43 8 776 0.0 T 14-09-2016 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 SMART SM00464 10 202 1.2E-84 T 14-09-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 3.2E-17 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 Gene3D G3DSA:3.40.50.300 310 499 4.0E-33 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 Hamap MF_01973 Lon protease [lon]. 11 772 72.143 T 14-09-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 SUPERFAMILY SSF54211 595 770 6.45E-59 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 1.0E-42 T 14-09-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 14-09-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 PIRSF PIRSF001174 1 775 0.0 T 14-09-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 PAJ_RS01725 c340d7d955054c479b41aad6a8dd7dd2 784 PANTHER PTHR10046 8 776 0.0 T 14-09-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 PAJ_RS03355 a7afacea8ab9e18624bc4d2ca9480e4b 511 PANTHER PTHR30290 1 511 0.0 T 14-09-2016 PAJ_RS03355 a7afacea8ab9e18624bc4d2ca9480e4b 511 Gene3D G3DSA:3.40.190.10 131 279 4.0E-48 T 14-09-2016 PAJ_RS03355 a7afacea8ab9e18624bc4d2ca9480e4b 511 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 72 428 9.4E-97 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS03355 a7afacea8ab9e18624bc4d2ca9480e4b 511 Gene3D G3DSA:3.10.105.10 280 480 5.2E-61 T 14-09-2016 PAJ_RS03355 a7afacea8ab9e18624bc4d2ca9480e4b 511 PIRSF PIRSF002741 21 511 2.1E-108 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS03355 a7afacea8ab9e18624bc4d2ca9480e4b 511 PANTHER PTHR30290:SF32 1 511 0.0 T 14-09-2016 PAJ_RS03355 a7afacea8ab9e18624bc4d2ca9480e4b 511 SUPERFAMILY SSF53850 30 509 3.51E-143 T 14-09-2016 PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 Pfam PF02080 TrkA-C domain 421 483 9.6E-10 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 PANTHER PTHR32507 6 575 1.1E-279 T 14-09-2016 PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 Pfam PF03471 Transporter associated domain 493 570 4.5E-14 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 Gene3D G3DSA:3.30.465.10 497 570 2.0E-13 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 Gene3D G3DSA:3.30.70.1450 421 483 5.1E-6 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 PANTHER PTHR32507:SF7 6 575 1.1E-279 T 14-09-2016 IPR030151 K(+)/H(+) antiporter NhaP GO:0005451|GO:0006813|GO:0016021 PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 SMART SM01091 492 572 4.0E-20 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 575 48.497 T 14-09-2016 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 SUPERFAMILY SSF116726 417 483 7.06E-9 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 Pfam PF00999 Sodium/hydrogen exchanger family 15 385 9.1E-56 T 14-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PAJ_RS07965 bf672164369a7a612f7205686c33f500 575 SUPERFAMILY SSF56176 497 570 4.09E-12 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS00920 b8d719171e50d402211f2632acc7163e 240 SMART SM00895 88 211 7.2E-7 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS00920 b8d719171e50d402211f2632acc7163e 240 Pfam PF07729 FCD domain 88 210 2.5E-13 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS00920 b8d719171e50d402211f2632acc7163e 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 78 1.4E-15 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS00920 b8d719171e50d402211f2632acc7163e 240 PANTHER PTHR11751 16 108 1.5E-20 T 14-09-2016 PAJ_RS00920 b8d719171e50d402211f2632acc7163e 240 Gene3D G3DSA:1.10.10.10 16 79 1.2E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00920 b8d719171e50d402211f2632acc7163e 240 Gene3D G3DSA:1.20.120.530 83 216 3.0E-23 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS00920 b8d719171e50d402211f2632acc7163e 240 SUPERFAMILY SSF48008 83 215 1.02E-17 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS00920 b8d719171e50d402211f2632acc7163e 240 SUPERFAMILY SSF46785 18 82 3.48E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00920 b8d719171e50d402211f2632acc7163e 240 SMART SM00345 20 78 7.7E-16 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Pfam PF01131 DNA topoisomerase 157 565 1.9E-128 T 14-09-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 SUPERFAMILY SSF57783 809 864 1.0E-22 T 14-09-2016 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Gene3D G3DSA:2.70.20.10 213 332 5.1E-30 T 14-09-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Gene3D G3DSA:2.70.20.10 338 473 4.5E-36 T 14-09-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Pfam PF01751 Toprim domain 5 142 1.0E-32 T 14-09-2016 IPR006171 Toprim domain PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 708 745 2.7E-11 T 14-09-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 598 622 1.3E-5 T 14-09-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 SMART SM00493 3 132 1.4E-32 T 14-09-2016 IPR006171 Toprim domain PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 490 504 9.3E-37 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 314 323 9.3E-37 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 106 119 9.3E-37 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 390 406 9.3E-37 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 191 209 9.3E-37 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Gene3D G3DSA:3.30.65.10 597 628 6.0E-11 T 14-09-2016 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Gene3D G3DSA:3.30.65.10 707 743 1.2E-11 T 14-09-2016 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Gene3D G3DSA:3.30.65.10 745 806 7.4E-26 T 14-09-2016 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 SMART SM00437 272 527 5.8E-123 T 14-09-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 SUPERFAMILY SSF57783 744 807 4.93E-19 T 14-09-2016 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 PANTHER PTHR11390:SF27 1 37 0.0 T 14-09-2016 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 PANTHER PTHR11390:SF27 67 776 0.0 T 14-09-2016 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 309 323 - T 14-09-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Gene3D G3DSA:3.40.50.140 1 163 1.9E-58 T 14-09-2016 IPR006171 Toprim domain PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 SUPERFAMILY SSF57783 702 743 2.98E-7 T 14-09-2016 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 PANTHER PTHR11390 1 37 0.0 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 SMART SM00436 133 221 1.4E-47 T 14-09-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 634 1.2E-256 T 14-09-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 723 54.901 T 14-09-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 PANTHER PTHR11390 67 776 0.0 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 SUPERFAMILY SSF56712 3 609 7.46E-205 T 14-09-2016 IPR023405 DNA topoisomerase, type IA, core domain PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Gene3D G3DSA:2.20.25.10 808 865 1.9E-31 T 14-09-2016 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Gene3D G3DSA:1.10.460.10 474 596 2.0E-58 T 14-09-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Gene3D G3DSA:1.10.460.10 164 211 2.0E-58 T 14-09-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Pfam PF08272 Topoisomerase I zinc-ribbon-like 758 793 3.5E-12 T 14-09-2016 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 PAJ_RS07640 88dd02aa73cb928ecb2c9e3f70160205 865 Pfam PF08272 Topoisomerase I zinc-ribbon-like 824 863 1.8E-23 T 14-09-2016 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 PAJ_RS05940 c54c59d5848dc0084bbf19d07e6bdee8 301 PANTHER PTHR30126:SF18 1 301 6.5E-159 T 14-09-2016 PAJ_RS05940 c54c59d5848dc0084bbf19d07e6bdee8 301 SUPERFAMILY SSF46785 6 88 1.36E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05940 c54c59d5848dc0084bbf19d07e6bdee8 301 SUPERFAMILY SSF53850 89 291 6.52E-31 T 14-09-2016 PAJ_RS05940 c54c59d5848dc0084bbf19d07e6bdee8 301 PANTHER PTHR30126 1 301 6.5E-159 T 14-09-2016 PAJ_RS05940 c54c59d5848dc0084bbf19d07e6bdee8 301 Gene3D G3DSA:1.10.10.10 6 88 1.4E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05940 c54c59d5848dc0084bbf19d07e6bdee8 301 Gene3D G3DSA:3.40.190.10 174 261 8.6E-8 T 14-09-2016 PAJ_RS05940 c54c59d5848dc0084bbf19d07e6bdee8 301 Gene3D G3DSA:3.40.190.10 89 173 4.7E-11 T 14-09-2016 PAJ_RS05940 c54c59d5848dc0084bbf19d07e6bdee8 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.3E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS05940 c54c59d5848dc0084bbf19d07e6bdee8 301 Pfam PF03466 LysR substrate binding domain 88 290 3.7E-28 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 Pfam PF02222 ATP-grasp domain 123 295 2.3E-56 T 14-09-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 391 2.0E-189 T 14-09-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 UniPathway: UPA00074 PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 SUPERFAMILY SSF52440 3 112 8.34E-36 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 SUPERFAMILY SSF51246 319 391 1.44E-17 T 14-09-2016 IPR011054 Rudiment single hybrid motif PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 Gene3D G3DSA:3.40.50.20 5 120 1.3E-39 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 PANTHER PTHR11609:SF7 1 382 9.9E-222 T 14-09-2016 PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 SUPERFAMILY SSF56059 113 314 1.1E-55 T 14-09-2016 PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 8 391 51.68 T 14-09-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 UniPathway: UPA00074 PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 PANTHER PTHR11609 1 382 9.9E-222 T 14-09-2016 PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 Gene3D G3DSA:3.30.1490.20 123 199 2.3E-26 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS08320 d87e803c2cc737daf987f39e6892feab 392 Gene3D G3DSA:3.30.470.20 200 386 1.3E-66 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 PANTHER PTHR32089 145 514 8.6E-115 T 14-09-2016 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 SMART SM00283 266 513 1.9E-75 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 Gene3D G3DSA:1.10.287.950 281 485 5.1E-54 T 14-09-2016 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 512 1.5E-57 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 SUPERFAMILY SSF58104 241 514 9.68E-65 T 14-09-2016 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 PANTHER PTHR32089:SF48 145 514 8.6E-115 T 14-09-2016 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 1.2E-53 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 1.2E-53 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 24 1.2E-53 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 1.2E-53 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 1.2E-53 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 181 6.3E-11 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS06695 f5db950314bcfd42d2b5a67b1a6afe69 514 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 291 313 - T 14-09-2016 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site PAJ_RS04755 a72999d38284a6a4ea07bf7c8ac12c0c 180 SUPERFAMILY SSF49401 30 179 1.09E-23 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS04755 a72999d38284a6a4ea07bf7c8ac12c0c 180 PANTHER PTHR33420:SF10 6 180 6.1E-40 T 14-09-2016 PAJ_RS04755 a72999d38284a6a4ea07bf7c8ac12c0c 180 Pfam PF00419 Fimbrial protein 31 179 3.0E-12 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS04755 a72999d38284a6a4ea07bf7c8ac12c0c 180 PANTHER PTHR33420 6 180 6.1E-40 T 14-09-2016 PAJ_RS04755 a72999d38284a6a4ea07bf7c8ac12c0c 180 Gene3D G3DSA:2.60.40.1090 30 179 1.5E-24 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS09480 e3ec0ceb9c5632db7b0b123b24b44bdc 280 SUPERFAMILY SSF55729 3 260 1.06E-38 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS09480 e3ec0ceb9c5632db7b0b123b24b44bdc 280 Gene3D G3DSA:3.40.630.30 1 120 8.8E-23 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS09480 e3ec0ceb9c5632db7b0b123b24b44bdc 280 Pfam PF13508 Acetyltransferase (GNAT) domain 41 115 5.0E-11 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS09480 e3ec0ceb9c5632db7b0b123b24b44bdc 280 PANTHER PTHR21471 3 225 9.4E-25 T 14-09-2016 PAJ_RS09480 e3ec0ceb9c5632db7b0b123b24b44bdc 280 PANTHER PTHR21471:SF60 3 225 9.4E-25 T 14-09-2016 PAJ_RS01015 3a9de59df95ad571f4a1f1b46e311fd4 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 252 3.4E-50 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS01015 3a9de59df95ad571f4a1f1b46e311fd4 261 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 57 70 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS01015 3a9de59df95ad571f4a1f1b46e311fd4 261 PANTHER PTHR18966 23 250 3.2E-40 T 14-09-2016 PAJ_RS01015 3a9de59df95ad571f4a1f1b46e311fd4 261 PANTHER PTHR18966:SF191 23 250 3.2E-40 T 14-09-2016 PAJ_RS01015 3a9de59df95ad571f4a1f1b46e311fd4 261 SMART SM00062 34 254 3.0E-47 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS01015 3a9de59df95ad571f4a1f1b46e311fd4 261 Gene3D G3DSA:3.40.190.10 13 139 9.6E-38 T 14-09-2016 PAJ_RS01015 3a9de59df95ad571f4a1f1b46e311fd4 261 Gene3D G3DSA:3.40.190.10 140 203 3.2E-12 T 14-09-2016 PAJ_RS01015 3a9de59df95ad571f4a1f1b46e311fd4 261 SUPERFAMILY SSF53850 1 253 7.95E-57 T 14-09-2016 PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 14-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 SMART SM00937 63 178 1.7E-68 T 14-09-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 Gene3D G3DSA:1.20.58.410 6 93 5.2E-20 T 14-09-2016 PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.962 T 14-09-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 Pfam PF03462 PCRF domain 12 203 5.9E-75 T 14-09-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 PANTHER PTHR11075 1 356 2.4E-177 T 14-09-2016 PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 PANTHER PTHR11075:SF9 1 356 2.4E-177 T 14-09-2016 PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 SUPERFAMILY SSF75620 12 353 1.22E-136 T 14-09-2016 PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 357 9.3E-175 T 14-09-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 Gene3D G3DSA:3.30.160.20 215 288 1.6E-35 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain PAJ_RS05500 5188c04edd5edccbaa1140ea161f81ab 360 Pfam PF00472 RF-1 domain 216 321 7.1E-42 T 14-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 PAJ_RS13060 8f1f46a86559f427f3bae9f9322b5aea 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 131 2.8E-47 T 14-09-2016 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS13060 8f1f46a86559f427f3bae9f9322b5aea 281 Gene3D G3DSA:3.30.1130.10 21 138 3.0E-41 T 14-09-2016 PAJ_RS13060 8f1f46a86559f427f3bae9f9322b5aea 281 PANTHER PTHR34354 2 281 2.6E-104 T 14-09-2016 PAJ_RS13060 8f1f46a86559f427f3bae9f9322b5aea 281 Pfam PF14489 QueF-like protein 195 267 3.4E-27 T 14-09-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS13060 8f1f46a86559f427f3bae9f9322b5aea 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 161.533 T 14-09-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS13060 8f1f46a86559f427f3bae9f9322b5aea 281 Gene3D G3DSA:3.30.1130.10 146 281 1.0E-55 T 14-09-2016 PAJ_RS13060 8f1f46a86559f427f3bae9f9322b5aea 281 TIGRFAM TIGR03138 QueF: queuine synthase 10 281 1.7E-126 T 14-09-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS13060 8f1f46a86559f427f3bae9f9322b5aea 281 PANTHER PTHR34354:SF1 2 281 2.6E-104 T 14-09-2016 PAJ_RS13060 8f1f46a86559f427f3bae9f9322b5aea 281 PIRSF PIRSF004750 7 281 1.5E-124 T 14-09-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS13060 8f1f46a86559f427f3bae9f9322b5aea 281 SUPERFAMILY SSF55620 185 266 2.3E-9 T 14-09-2016 PAJ_RS18280 74c75ed5008a20eca2dfebee601d0007 362 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 4 348 27.715 T 14-09-2016 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|UniPathway: UPA00281 PAJ_RS18280 74c75ed5008a20eca2dfebee601d0007 362 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 3 345 8.5E-158 T 14-09-2016 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|UniPathway: UPA00281 PAJ_RS18280 74c75ed5008a20eca2dfebee601d0007 362 Pfam PF00953 Glycosyl transferase family 4 70 228 1.9E-28 T 14-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS18280 74c75ed5008a20eca2dfebee601d0007 362 PANTHER PTHR22926:SF3 7 353 8.1E-106 T 14-09-2016 PAJ_RS18280 74c75ed5008a20eca2dfebee601d0007 362 PANTHER PTHR22926 7 353 8.1E-106 T 14-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.7E-12 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.7E-12 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 PANTHER PTHR30363 1 252 4.5E-126 T 14-09-2016 PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 SUPERFAMILY SSF46785 3 73 4.49E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 2.2E-23 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 Pfam PF00455 DeoR C terminal sensor domain 76 232 2.6E-54 T 14-09-2016 IPR014036 DeoR C-terminal sensor domain PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 Gene3D G3DSA:3.30.750.70 72 153 4.0E-18 T 14-09-2016 PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 SUPERFAMILY SSF100950 73 234 3.12E-30 T 14-09-2016 PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 14-09-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 SMART SM01134 72 233 2.2E-72 T 14-09-2016 PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 Gene3D G3DSA:1.10.10.10 2 58 5.0E-11 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 PANTHER PTHR30363:SF1 1 252 4.5E-126 T 14-09-2016 PAJ_RS16200 fb18860b2278fdb0b3a16bed2f634007 252 SMART SM00420 6 58 1.8E-25 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS13970 49fee21519366890afc38d36dc27b2b5 376 SUPERFAMILY SSF103473 18 373 2.09E-30 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS13970 49fee21519366890afc38d36dc27b2b5 376 Pfam PF07690 Major Facilitator Superfamily 15 194 3.9E-9 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS13970 49fee21519366890afc38d36dc27b2b5 376 Gene3D G3DSA:1.20.1250.20 211 374 4.9E-11 T 14-09-2016 PAJ_RS13970 49fee21519366890afc38d36dc27b2b5 376 Gene3D G3DSA:1.20.1250.20 19 187 3.4E-19 T 14-09-2016 PAJ_RS10210 a4749613d061970123d325563e2fde66 288 Gene3D G3DSA:3.40.190.10 87 188 4.5E-28 T 14-09-2016 PAJ_RS10210 a4749613d061970123d325563e2fde66 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 5.8E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS10210 a4749613d061970123d325563e2fde66 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 5.8E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS10210 a4749613d061970123d325563e2fde66 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 5.8E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS10210 a4749613d061970123d325563e2fde66 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.2E-16 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS10210 a4749613d061970123d325563e2fde66 288 Gene3D G3DSA:3.40.190.10 189 254 5.2E-12 T 14-09-2016 PAJ_RS10210 a4749613d061970123d325563e2fde66 288 SUPERFAMILY SSF46785 2 109 1.25E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10210 a4749613d061970123d325563e2fde66 288 SUPERFAMILY SSF53850 87 288 1.9E-43 T 14-09-2016 PAJ_RS10210 a4749613d061970123d325563e2fde66 288 Gene3D G3DSA:1.10.10.10 2 82 5.6E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10210 a4749613d061970123d325563e2fde66 288 Pfam PF03466 LysR substrate binding domain 86 288 3.8E-47 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS10210 a4749613d061970123d325563e2fde66 288 PANTHER PTHR30126:SF36 2 288 1.6E-184 T 14-09-2016 PAJ_RS10210 a4749613d061970123d325563e2fde66 288 PANTHER PTHR30126 2 288 1.6E-184 T 14-09-2016 PAJ_RS09635 57ac48bb8ce37da48dbc6a90774d497d 280 Gene3D G3DSA:3.40.225.10 1 272 1.0E-97 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS09635 57ac48bb8ce37da48dbc6a90774d497d 280 PANTHER PTHR22789:SF4 68 272 1.3E-114 T 14-09-2016 PAJ_RS09635 57ac48bb8ce37da48dbc6a90774d497d 280 PANTHER PTHR22789:SF4 1 39 1.3E-114 T 14-09-2016 PAJ_RS09635 57ac48bb8ce37da48dbc6a90774d497d 280 SUPERFAMILY SSF53639 1 270 4.12E-66 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS09635 57ac48bb8ce37da48dbc6a90774d497d 280 PANTHER PTHR22789 68 272 1.3E-114 T 14-09-2016 PAJ_RS09635 57ac48bb8ce37da48dbc6a90774d497d 280 PANTHER PTHR22789 1 39 1.3E-114 T 14-09-2016 PAJ_RS09635 57ac48bb8ce37da48dbc6a90774d497d 280 TIGRFAM TIGR02624 rhamnu_1P_ald: rhamnulose-1-phosphate aldolase 1 271 3.4E-127 T 14-09-2016 IPR013447 Rhamnulose-1-phosphate aldolase GO:0008994|GO:0019301 KEGG: 00040+4.1.2.19|KEGG: 00051+4.1.2.19|UniPathway: UPA00541 PAJ_RS09635 57ac48bb8ce37da48dbc6a90774d497d 280 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 12 237 2.2E-35 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS09635 57ac48bb8ce37da48dbc6a90774d497d 280 Hamap MF_00770 Rhamnulose-1-phosphate aldolase [rhaD]. 1 272 54.733 T 14-09-2016 IPR013447 Rhamnulose-1-phosphate aldolase GO:0008994|GO:0019301 KEGG: 00040+4.1.2.19|KEGG: 00051+4.1.2.19|UniPathway: UPA00541 PAJ_RS09635 57ac48bb8ce37da48dbc6a90774d497d 280 SMART SM01007 11 239 3.9E-29 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS13270 16d1839bb94220e31ec31f2bc930b27a 172 PIRSF PIRSF038996 1 171 4.6E-55 T 14-09-2016 IPR010086 Flavodoxin, long chain GO:0010181 PAJ_RS13270 16d1839bb94220e31ec31f2bc930b27a 172 PANTHER PTHR19384:SF73 1 119 1.4E-76 T 14-09-2016 PAJ_RS13270 16d1839bb94220e31ec31f2bc930b27a 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 167 5.2E-66 T 14-09-2016 IPR010086 Flavodoxin, long chain GO:0010181 PAJ_RS13270 16d1839bb94220e31ec31f2bc930b27a 172 SUPERFAMILY SSF52218 1 167 3.47E-47 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS13270 16d1839bb94220e31ec31f2bc930b27a 172 Gene3D G3DSA:3.40.50.360 1 167 1.1E-54 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS13270 16d1839bb94220e31ec31f2bc930b27a 172 PANTHER PTHR19384 1 119 1.4E-76 T 14-09-2016 PAJ_RS13270 16d1839bb94220e31ec31f2bc930b27a 172 Pfam PF00258 Flavodoxin 5 160 3.8E-24 T 14-09-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 PAJ_RS13270 16d1839bb94220e31ec31f2bc930b27a 172 PANTHER PTHR19384:SF73 141 171 1.4E-76 T 14-09-2016 PAJ_RS13270 16d1839bb94220e31ec31f2bc930b27a 172 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 14-09-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 PAJ_RS13270 16d1839bb94220e31ec31f2bc930b27a 172 PANTHER PTHR19384 141 171 1.4E-76 T 14-09-2016 PAJ_RS03750 8cb8792e3eb68c5be416b4692d29dba2 382 Gene3D G3DSA:3.20.20.30 287 350 4.8E-104 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS03750 8cb8792e3eb68c5be416b4692d29dba2 382 Gene3D G3DSA:3.20.20.30 5 253 4.8E-104 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS03750 8cb8792e3eb68c5be416b4692d29dba2 382 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 5 349 3.6E-189 T 14-09-2016 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 PAJ_RS03750 8cb8792e3eb68c5be416b4692d29dba2 382 PANTHER PTHR30011 1 381 1.4E-206 T 14-09-2016 PAJ_RS03750 8cb8792e3eb68c5be416b4692d29dba2 382 PANTHER PTHR30011:SF1 1 381 1.4E-206 T 14-09-2016 PAJ_RS03750 8cb8792e3eb68c5be416b4692d29dba2 382 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 4 379 69.724 T 14-09-2016 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 PAJ_RS03750 8cb8792e3eb68c5be416b4692d29dba2 382 Pfam PF00296 Luciferase-like monooxygenase 5 325 9.0E-88 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS03750 8cb8792e3eb68c5be416b4692d29dba2 382 SUPERFAMILY SSF51679 5 349 1.44E-97 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS12900 e4f3576a048c521c23cf7960972fd9db 280 Gene3D G3DSA:3.40.190.10 49 130 7.5E-36 T 14-09-2016 PAJ_RS12900 e4f3576a048c521c23cf7960972fd9db 280 Gene3D G3DSA:3.40.190.10 231 271 7.5E-36 T 14-09-2016 PAJ_RS12900 e4f3576a048c521c23cf7960972fd9db 280 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 75 88 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS12900 e4f3576a048c521c23cf7960972fd9db 280 Gene3D G3DSA:3.40.190.10 131 230 6.4E-22 T 14-09-2016 PAJ_RS12900 e4f3576a048c521c23cf7960972fd9db 280 SMART SM00062 52 271 1.3E-62 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS12900 e4f3576a048c521c23cf7960972fd9db 280 PANTHER PTHR18966 39 275 4.6E-45 T 14-09-2016 PAJ_RS12900 e4f3576a048c521c23cf7960972fd9db 280 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 53 269 2.1E-60 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS12900 e4f3576a048c521c23cf7960972fd9db 280 PANTHER PTHR18966:SF191 39 275 4.6E-45 T 14-09-2016 PAJ_RS12900 e4f3576a048c521c23cf7960972fd9db 280 SMART SM00079 52 270 0.0038 T 14-09-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 PAJ_RS12900 e4f3576a048c521c23cf7960972fd9db 280 SUPERFAMILY SSF53850 42 271 1.33E-65 T 14-09-2016 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 Pfam PF00311 Phosphoenolpyruvate carboxylase 128 882 5.0E-292 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 133 144 - T 14-09-2016 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 PANTHER PTHR30523:SF3 1 882 0.0 T 14-09-2016 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 PANTHER PTHR30523 1 882 0.0 T 14-09-2016 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 SUPERFAMILY SSF51621 6 882 0.0 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 Gene3D G3DSA:1.20.1440.90 272 387 1.5E-31 T 14-09-2016 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 536 548 - T 14-09-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 882 18.271 T 14-09-2016 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 185 201 8.3E-69 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 385 405 8.3E-69 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 132 145 8.3E-69 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 534 554 8.3E-69 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 605 8.3E-69 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 244 259 8.3E-69 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS17010 015aab795afad40eacb438b9a3c347e7 882 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 708 734 8.3E-69 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PAJ_RS00545 ccefc975f62e98f053f32d4c8f098e95 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 1.8E-8 T 14-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PAJ_RS00545 ccefc975f62e98f053f32d4c8f098e95 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 1.8E-8 T 14-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PAJ_RS00545 ccefc975f62e98f053f32d4c8f098e95 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 1.8E-8 T 14-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PAJ_RS00545 ccefc975f62e98f053f32d4c8f098e95 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 139 163 1.8E-8 T 14-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PAJ_RS00545 ccefc975f62e98f053f32d4c8f098e95 256 PANTHER PTHR30413 3 255 2.1E-160 T 14-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PAJ_RS00545 ccefc975f62e98f053f32d4c8f098e95 256 Pfam PF01061 ABC-2 type transporter 9 218 1.3E-38 T 14-09-2016 IPR013525 ABC-2 type transporter GO:0016020 PAJ_RS00545 ccefc975f62e98f053f32d4c8f098e95 256 PANTHER PTHR30413:SF2 3 255 2.1E-160 T 14-09-2016 PAJ_RS00545 ccefc975f62e98f053f32d4c8f098e95 256 PIRSF PIRSF006648 7 253 9.8E-24 T 14-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PAJ_RS11960 769f432bbf70f408cd58ffe43599f3cd 417 PIRSF PIRSF000412 1 416 5.1E-173 T 14-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PAJ_RS11960 769f432bbf70f408cd58ffe43599f3cd 417 Gene3D G3DSA:3.40.640.10 37 285 2.2E-109 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS11960 769f432bbf70f408cd58ffe43599f3cd 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 2.5E-185 T 14-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PAJ_RS11960 769f432bbf70f408cd58ffe43599f3cd 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.508 T 14-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PAJ_RS11960 769f432bbf70f408cd58ffe43599f3cd 417 PANTHER PTHR11680:SF9 1 416 0.0 T 14-09-2016 PAJ_RS11960 769f432bbf70f408cd58ffe43599f3cd 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 14-09-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PAJ_RS11960 769f432bbf70f408cd58ffe43599f3cd 417 PANTHER PTHR11680 1 416 0.0 T 14-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PAJ_RS11960 769f432bbf70f408cd58ffe43599f3cd 417 SUPERFAMILY SSF53383 8 416 5.36E-183 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS11960 769f432bbf70f408cd58ffe43599f3cd 417 Gene3D G3DSA:3.90.1150.10 286 416 6.5E-56 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 385 619 4.1E-24 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 SUPERFAMILY SSF51905 512 637 2.2E-15 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 385 407 3.7E-8 T 14-09-2016 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 603 617 3.7E-8 T 14-09-2016 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 418 433 3.7E-8 T 14-09-2016 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 PANTHER PTHR22893 4 426 5.2E-206 T 14-09-2016 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 SUPERFAMILY SSF51971 341 547 1.09E-32 T 14-09-2016 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 337 1.7E-73 T 14-09-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 386 405 6.8E-16 T 14-09-2016 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 519 537 6.8E-16 T 14-09-2016 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 602 618 6.8E-16 T 14-09-2016 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 469 487 6.8E-16 T 14-09-2016 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 Gene3D G3DSA:3.50.50.60 533 620 2.5E-11 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 Gene3D G3DSA:3.20.20.70 2 376 1.1E-119 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 SUPERFAMILY SSF51395 3 366 8.74E-105 T 14-09-2016 PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 Gene3D G3DSA:3.40.50.720 381 532 9.8E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00240 5ee9d5d6121810cfb61cb1e14a69ba10 677 PANTHER PTHR22893:SF66 4 426 5.2E-206 T 14-09-2016 PAJ_RS15915 81fff23739bec22780d77d9b63e7b449 240 PANTHER PTHR35568:SF3 10 237 1.5E-171 T 14-09-2016 PAJ_RS15915 81fff23739bec22780d77d9b63e7b449 240 PANTHER PTHR35568 10 237 1.5E-171 T 14-09-2016 PAJ_RS15915 81fff23739bec22780d77d9b63e7b449 240 Pfam PF13309 HTH domain 171 228 4.4E-19 T 14-09-2016 PAJ_RS15915 81fff23739bec22780d77d9b63e7b449 240 Pfam PF08348 YheO-like PAS domain 29 137 2.1E-36 T 14-09-2016 IPR013559 YheO-like PAJ_RS15915 81fff23739bec22780d77d9b63e7b449 240 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 27 153 2.0E-63 T 14-09-2016 IPR013559 YheO-like PAJ_RS05825 9e9c801a58a02176ff50e5b7df734dbb 348 PIRSF PIRSF001361 1 348 8.2E-155 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS05825 9e9c801a58a02176ff50e5b7df734dbb 348 Pfam PF00793 DAHP synthetase I family 41 337 1.0E-101 T 14-09-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PAJ_RS05825 9e9c801a58a02176ff50e5b7df734dbb 348 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 347 2.6E-168 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS05825 9e9c801a58a02176ff50e5b7df734dbb 348 SUPERFAMILY SSF51569 7 347 9.0E-131 T 14-09-2016 PAJ_RS05825 9e9c801a58a02176ff50e5b7df734dbb 348 PANTHER PTHR21225 1 347 1.9E-243 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS05825 9e9c801a58a02176ff50e5b7df734dbb 348 Gene3D G3DSA:3.20.20.70 8 347 2.8E-143 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS05825 9e9c801a58a02176ff50e5b7df734dbb 348 PANTHER PTHR21225:SF6 1 347 1.9E-243 T 14-09-2016 PAJ_RS13575 cf894a1256ac4ec54debe36c55465bc8 327 PANTHER PTHR11695 16 325 1.2E-142 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS13575 cf894a1256ac4ec54debe36c55465bc8 327 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 3 325 1.8E-129 T 14-09-2016 IPR014188 Acrylyl-CoA reductase AcuI PAJ_RS13575 cf894a1256ac4ec54debe36c55465bc8 327 PANTHER PTHR11695:SF13 16 325 1.2E-142 T 14-09-2016 IPR014188 Acrylyl-CoA reductase AcuI PAJ_RS13575 cf894a1256ac4ec54debe36c55465bc8 327 Gene3D G3DSA:3.40.50.720 126 291 6.2E-74 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13575 cf894a1256ac4ec54debe36c55465bc8 327 SMART SM00829 15 324 2.7E-5 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS13575 cf894a1256ac4ec54debe36c55465bc8 327 Gene3D G3DSA:3.90.180.10 2 86 5.1E-6 T 14-09-2016 IPR011032 GroES-like PAJ_RS13575 cf894a1256ac4ec54debe36c55465bc8 327 Pfam PF00107 Zinc-binding dehydrogenase 159 270 6.8E-13 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS13575 cf894a1256ac4ec54debe36c55465bc8 327 SUPERFAMILY SSF51735 119 287 4.0E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13575 cf894a1256ac4ec54debe36c55465bc8 327 SUPERFAMILY SSF50129 2 145 1.89E-38 T 14-09-2016 IPR011032 GroES-like PAJ_RS14040 20b67061090d45769c926db3a0c70474 141 Gene3D G3DSA:3.40.50.620 4 138 1.9E-13 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS14040 20b67061090d45769c926db3a0c70474 141 PIRSF PIRSF006276 1 141 3.8E-19 T 14-09-2016 IPR006015 Universal stress protein A PAJ_RS14040 20b67061090d45769c926db3a0c70474 141 Pfam PF00582 Universal stress protein family 5 137 2.0E-7 T 14-09-2016 IPR006016 UspA GO:0006950 PAJ_RS14040 20b67061090d45769c926db3a0c70474 141 SUPERFAMILY SSF52402 4 138 1.42E-15 T 14-09-2016 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 4.7E-10 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 4.7E-10 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 4.7E-10 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 PANTHER PTHR24423:SF564 152 423 4.0E-120 T 14-09-2016 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 PANTHER PTHR24423:SF564 6 101 4.0E-120 T 14-09-2016 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 SMART SM00304 158 210 1.2E-4 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 SMART SM00388 211 271 3.8E-8 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 Gene3D G3DSA:1.10.287.130 201 267 7.7E-14 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 SUPERFAMILY SSF47384 195 271 6.08E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 SUPERFAMILY SSF55874 261 423 1.7E-36 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS07370 285307bc01282784b8840e3def75143e 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 316 424 1.5E-18 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS07370 285307bc01282784b8840e3def75143e 433 PANTHER PTHR24423 6 101 4.0E-120 T 14-09-2016 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 270 1.5E-7 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 PANTHER PTHR24423 152 423 4.0E-120 T 14-09-2016 PAJ_RS07370 285307bc01282784b8840e3def75143e 433 SMART SM00387 315 425 2.7E-32 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS07370 285307bc01282784b8840e3def75143e 433 Gene3D G3DSA:3.30.565.10 273 425 4.7E-35 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS02350 ef9aa02d3296b4b2abb5047f6eec7f7b 428 PANTHER PTHR35334:SF2 1 427 4.1E-269 T 14-09-2016 PAJ_RS02350 ef9aa02d3296b4b2abb5047f6eec7f7b 428 TIGRFAM TIGR00814 stp: serine transporter 20 416 3.2E-173 T 14-09-2016 IPR004694 Hydroxy amino acid transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS02350 ef9aa02d3296b4b2abb5047f6eec7f7b 428 PANTHER PTHR35334 1 427 4.1E-269 T 14-09-2016 PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.411 T 14-09-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 Gene3D G3DSA:3.40.50.300 66 253 7.4E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 Gene3D G3DSA:3.40.50.300 294 311 7.4E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 SMART SM01086 317 412 2.4E-34 T 14-09-2016 IPR019489 Clp ATPase, C-terminal PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 PANTHER PTHR11262 10 413 3.5E-256 T 14-09-2016 PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 2.0E-48 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 SUPERFAMILY SSF57716 13 48 5.84E-12 T 14-09-2016 PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 SUPERFAMILY SSF52540 64 404 3.38E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 SMART SM00994 12 51 1.0E-24 T 14-09-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 Pfam PF06689 ClpX C4-type zinc finger 13 50 3.0E-21 T 14-09-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 395 1.3E-16 T 14-09-2016 IPR019489 Clp ATPase, C-terminal PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 SMART SM00382 111 333 8.8E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 Gene3D G3DSA:1.10.8.60 316 415 7.7E-38 T 14-09-2016 PAJ_RS01720 e4990f46f61b55b354f4702d45d8e246 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 412 2.6E-214 T 14-09-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 PAJ_RS13725 dfd17b14ef48eabb6d82818d24e8b965 273 SUPERFAMILY SSF51658 3 268 1.8E-59 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS13725 dfd17b14ef48eabb6d82818d24e8b965 273 PIRSF PIRSF036778 1 273 6.3E-95 T 14-09-2016 IPR014621 Uncharacterised conserved protein UCP036778, sugar epimerase-type PAJ_RS13725 dfd17b14ef48eabb6d82818d24e8b965 273 Gene3D G3DSA:3.20.20.150 2 269 2.4E-82 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS13725 dfd17b14ef48eabb6d82818d24e8b965 273 PANTHER PTHR12110 1 272 3.5E-57 T 14-09-2016 PAJ_RS13725 dfd17b14ef48eabb6d82818d24e8b965 273 Pfam PF01261 Xylose isomerase-like TIM barrel 26 201 5.6E-13 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS13725 dfd17b14ef48eabb6d82818d24e8b965 273 PANTHER PTHR12110:SF3 1 272 3.5E-57 T 14-09-2016 PAJ_RS16230 98279e062347b7b1c402ff12cae7d412 477 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 476 9.8E-168 T 14-09-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16230 98279e062347b7b1c402ff12cae7d412 477 PANTHER PTHR12526:SF17 1 477 2.3E-146 T 14-09-2016 PAJ_RS16230 98279e062347b7b1c402ff12cae7d412 477 Pfam PF08323 Starch synthase catalytic domain 2 233 4.2E-68 T 14-09-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16230 98279e062347b7b1c402ff12cae7d412 477 SUPERFAMILY SSF53756 5 477 1.05E-116 T 14-09-2016 PAJ_RS16230 98279e062347b7b1c402ff12cae7d412 477 Hamap MF_00484 Glycogen synthase [glgA]. 1 476 45.789 T 14-09-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16230 98279e062347b7b1c402ff12cae7d412 477 Gene3D G3DSA:3.40.50.2000 251 456 2.7E-69 T 14-09-2016 PAJ_RS16230 98279e062347b7b1c402ff12cae7d412 477 PANTHER PTHR12526 1 477 2.3E-146 T 14-09-2016 PAJ_RS16230 98279e062347b7b1c402ff12cae7d412 477 Pfam PF00534 Glycosyl transferases group 1 288 438 2.5E-12 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 Pfam PF03466 LysR substrate binding domain 86 289 1.9E-41 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 SUPERFAMILY SSF53850 88 291 2.17E-38 T 14-09-2016 PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 Gene3D G3DSA:3.40.190.10 178 253 7.0E-18 T 14-09-2016 PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.0E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.0E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.0E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 PANTHER PTHR30126 1 303 4.6E-190 T 14-09-2016 PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 Gene3D G3DSA:3.40.190.10 90 177 2.7E-15 T 14-09-2016 PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 Gene3D G3DSA:1.10.10.10 1 85 3.3E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 SUPERFAMILY SSF46785 2 109 2.23E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 8.3E-17 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS18490 4eacdfd17c106135181771149dd5fd96 309 PANTHER PTHR30126:SF25 1 303 4.6E-190 T 14-09-2016 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 Gene3D G3DSA:3.40.50.620 407 638 3.6E-134 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 Gene3D G3DSA:3.40.50.620 14 200 3.6E-134 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 Gene3D G3DSA:3.90.740.10 206 390 3.9E-53 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 402 417 2.6E-33 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 562 571 2.6E-33 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 2.6E-33 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 527 540 2.6E-33 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 2.6E-33 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 SUPERFAMILY SSF52374 3 202 1.39E-135 T 14-09-2016 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 SUPERFAMILY SSF52374 404 648 1.39E-135 T 14-09-2016 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 PANTHER PTHR11946 6 259 0.0 T 14-09-2016 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 PANTHER PTHR11946 282 938 0.0 T 14-09-2016 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 Pfam PF06827 Zinc finger found in FPG and IleRS 899 927 1.2E-10 T 14-09-2016 IPR010663 Zinc finger, FPG/IleRS-type PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 Gene3D G3DSA:1.10.730.10 643 789 2.1E-42 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 SUPERFAMILY SSF50677 204 404 1.26E-50 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 Pfam PF08264 Anticodon-binding domain of tRNA 686 842 5.4E-29 T 14-09-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 642 1.5E-230 T 14-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 PANTHER PTHR11946:SF11 6 259 0.0 T 14-09-2016 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 PANTHER PTHR11946:SF11 282 938 0.0 T 14-09-2016 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 844 1.0E-294 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 SUPERFAMILY SSF47323 653 930 2.06E-80 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS00070 86f5e78087ea57dd55815d07b0a01f16 939 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 930 21.414 T 14-09-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5 PAJ_RS16270 885e4281ee850a9a62992e0b273cfff1 331 SMART SM00354 5 75 2.1E-22 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS16270 885e4281ee850a9a62992e0b273cfff1 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 2.1E-14 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS16270 885e4281ee850a9a62992e0b273cfff1 331 PANTHER PTHR30146:SF2 4 331 9.6E-169 T 14-09-2016 PAJ_RS16270 885e4281ee850a9a62992e0b273cfff1 331 Gene3D G3DSA:1.10.260.40 4 60 8.9E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS16270 885e4281ee850a9a62992e0b273cfff1 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 313 5.4E-30 T 14-09-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain PAJ_RS16270 885e4281ee850a9a62992e0b273cfff1 331 SUPERFAMILY SSF47413 5 62 9.79E-12 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS16270 885e4281ee850a9a62992e0b273cfff1 331 PANTHER PTHR30146 4 331 9.6E-169 T 14-09-2016 PAJ_RS16270 885e4281ee850a9a62992e0b273cfff1 331 Gene3D G3DSA:3.40.50.2300 62 173 2.7E-38 T 14-09-2016 PAJ_RS16270 885e4281ee850a9a62992e0b273cfff1 331 SUPERFAMILY SSF53822 63 314 1.06E-57 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS16270 885e4281ee850a9a62992e0b273cfff1 331 Gene3D G3DSA:3.40.50.2300 174 330 3.5E-44 T 14-09-2016 PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 PANTHER PTHR30537 1 298 7.6E-160 T 14-09-2016 PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 Gene3D G3DSA:3.40.190.10 92 177 2.2E-27 T 14-09-2016 PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 SUPERFAMILY SSF53850 90 297 2.71E-47 T 14-09-2016 PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 PANTHER PTHR30537:SF11 1 298 7.6E-160 T 14-09-2016 PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 SUPERFAMILY SSF46785 4 84 2.88E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 Pfam PF03466 LysR substrate binding domain 89 294 9.2E-45 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 3.1E-21 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 Gene3D G3DSA:1.10.10.10 4 81 1.8E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 Gene3D G3DSA:3.40.190.10 178 260 6.2E-5 T 14-09-2016 PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.6E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.6E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16810 a268d03d8d57bcf4695bebab89c8d774 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.6E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 62 293 7.9E-57 T 14-09-2016 PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PANTHER PTHR24322 202 234 7.6E-63 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PANTHER PTHR24322:SF564 202 234 7.6E-63 T 14-09-2016 PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 182 190 6.7E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 6.7E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 141 6.7E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PANTHER PTHR24322 57 186 7.6E-63 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 221 1.3E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 240 1.3E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 54 71 1.3E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 141 1.3E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 192 1.3E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 258 278 1.3E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 SUPERFAMILY SSF51735 52 293 2.32E-76 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 PANTHER PTHR24322:SF564 57 186 7.6E-63 T 14-09-2016 PAJ_RS07145 6ffc40325c4a3cc8213a075387709d74 297 Gene3D G3DSA:3.40.50.720 48 293 4.8E-78 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00555 e217b820207c93874014bd92c9ef7ecd 284 SUPERFAMILY SSF52374 3 281 1.69E-105 T 14-09-2016 PAJ_RS00555 e217b820207c93874014bd92c9ef7ecd 284 PANTHER PTHR21299:SF1 3 284 2.2E-135 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 PAJ_RS00555 e217b820207c93874014bd92c9ef7ecd 284 PANTHER PTHR21299 3 284 2.2E-135 T 14-09-2016 PAJ_RS00555 e217b820207c93874014bd92c9ef7ecd 284 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 24 65 1.5E-8 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PAJ_RS00555 e217b820207c93874014bd92c9ef7ecd 284 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 5.4E-102 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 PAJ_RS00555 e217b820207c93874014bd92c9ef7ecd 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 2 280 1.5E-110 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 PAJ_RS00555 e217b820207c93874014bd92c9ef7ecd 284 Gene3D G3DSA:3.30.1300.10 181 282 2.1E-29 T 14-09-2016 PAJ_RS00555 e217b820207c93874014bd92c9ef7ecd 284 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 40.187 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 PAJ_RS00555 e217b820207c93874014bd92c9ef7ecd 284 Gene3D G3DSA:3.40.50.620 3 176 1.6E-77 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS13795 6c9e7d4d9533ef6d6621914f0c2f00db 199 SUPERFAMILY SSF52141 27 197 3.78E-18 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS13795 6c9e7d4d9533ef6d6621914f0c2f00db 199 Pfam PF03167 Uracil DNA glycosylase superfamily 80 176 1.3E-12 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS13795 6c9e7d4d9533ef6d6621914f0c2f00db 199 Gene3D G3DSA:3.40.470.10 80 194 1.4E-12 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS05150 6c9e7d4d9533ef6d6621914f0c2f00db 199 SUPERFAMILY SSF52141 27 197 3.78E-18 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS05150 6c9e7d4d9533ef6d6621914f0c2f00db 199 Pfam PF03167 Uracil DNA glycosylase superfamily 80 176 1.3E-12 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS05150 6c9e7d4d9533ef6d6621914f0c2f00db 199 Gene3D G3DSA:3.40.470.10 80 194 1.4E-12 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS05140 49f3dd01d696ad430a3eff2a10ba9edd 333 Gene3D G3DSA:2.130.10.10 155 330 1.8E-40 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PAJ_RS05140 49f3dd01d696ad430a3eff2a10ba9edd 333 Gene3D G3DSA:2.130.10.10 29 154 1.3E-22 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PAJ_RS05140 49f3dd01d696ad430a3eff2a10ba9edd 333 SUPERFAMILY SSF51004 36 330 6.54E-64 T 14-09-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain PAJ_RS05140 49f3dd01d696ad430a3eff2a10ba9edd 333 Pfam PF10282 Lactonase, 7-bladed beta-propeller 80 194 6.2E-5 T 14-09-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 PAJ_RS05140 49f3dd01d696ad430a3eff2a10ba9edd 333 Pfam PF10282 Lactonase, 7-bladed beta-propeller 199 291 1.2E-5 T 14-09-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 PAJ_RS05140 49f3dd01d696ad430a3eff2a10ba9edd 333 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 256 296 7.3E-13 T 14-09-2016 IPR011964 YVTN beta-propeller repeat PAJ_RS05140 49f3dd01d696ad430a3eff2a10ba9edd 333 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 215 254 3.1E-12 T 14-09-2016 IPR011964 YVTN beta-propeller repeat PAJ_RS05140 49f3dd01d696ad430a3eff2a10ba9edd 333 PANTHER PTHR13833 80 315 5.2E-23 T 14-09-2016 PAJ_RS13785 49f3dd01d696ad430a3eff2a10ba9edd 333 Gene3D G3DSA:2.130.10.10 155 330 1.8E-40 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PAJ_RS13785 49f3dd01d696ad430a3eff2a10ba9edd 333 Gene3D G3DSA:2.130.10.10 29 154 1.3E-22 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PAJ_RS13785 49f3dd01d696ad430a3eff2a10ba9edd 333 SUPERFAMILY SSF51004 36 330 6.54E-64 T 14-09-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain PAJ_RS13785 49f3dd01d696ad430a3eff2a10ba9edd 333 Pfam PF10282 Lactonase, 7-bladed beta-propeller 80 194 6.2E-5 T 14-09-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 PAJ_RS13785 49f3dd01d696ad430a3eff2a10ba9edd 333 Pfam PF10282 Lactonase, 7-bladed beta-propeller 199 291 1.2E-5 T 14-09-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 PAJ_RS13785 49f3dd01d696ad430a3eff2a10ba9edd 333 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 256 296 7.3E-13 T 14-09-2016 IPR011964 YVTN beta-propeller repeat PAJ_RS13785 49f3dd01d696ad430a3eff2a10ba9edd 333 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 215 254 3.1E-12 T 14-09-2016 IPR011964 YVTN beta-propeller repeat PAJ_RS13785 49f3dd01d696ad430a3eff2a10ba9edd 333 PANTHER PTHR13833 80 315 5.2E-23 T 14-09-2016 PAJ_RS14955 62bc4f51d98195ef609a98cfcaa110e0 167 PANTHER PTHR30399:SF4 1 165 2.5E-101 T 14-09-2016 PAJ_RS14955 62bc4f51d98195ef609a98cfcaa110e0 167 Pfam PF01863 Protein of unknown function DUF45 93 149 1.5E-13 T 14-09-2016 IPR002725 Protein of unknown function DUF45 PAJ_RS14955 62bc4f51d98195ef609a98cfcaa110e0 167 PANTHER PTHR30399 1 165 2.5E-101 T 14-09-2016 PAJ_RS14965 e208676bf4e975263e9dc415cdce0fa8 326 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 7.2E-26 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 PAJ_RS14965 e208676bf4e975263e9dc415cdce0fa8 326 SUPERFAMILY SSF55347 126 291 7.46E-24 T 14-09-2016 PAJ_RS14965 e208676bf4e975263e9dc415cdce0fa8 326 Gene3D G3DSA:3.30.360.10 142 324 1.8E-62 T 14-09-2016 PAJ_RS14965 e208676bf4e975263e9dc415cdce0fa8 326 Gene3D G3DSA:3.40.50.720 2 141 7.7E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS14965 e208676bf4e975263e9dc415cdce0fa8 326 SUPERFAMILY SSF51735 2 134 1.64E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS14965 e208676bf4e975263e9dc415cdce0fa8 326 PANTHER PTHR22604 2 316 7.8E-139 T 14-09-2016 PAJ_RS14965 e208676bf4e975263e9dc415cdce0fa8 326 PANTHER PTHR22604:SF76 2 316 7.8E-139 T 14-09-2016 PAJ_RS06485 05e872e0578a51ec0f9a00751c4bfd42 384 PANTHER PTHR30158 1 381 8.8E-172 T 14-09-2016 PAJ_RS06485 05e872e0578a51ec0f9a00751c4bfd42 384 Gene3D G3DSA:2.40.50.100 173 205 1.2E-22 T 14-09-2016 PAJ_RS06485 05e872e0578a51ec0f9a00751c4bfd42 384 Gene3D G3DSA:2.40.50.100 64 98 1.2E-22 T 14-09-2016 PAJ_RS06485 05e872e0578a51ec0f9a00751c4bfd42 384 SUPERFAMILY SSF111369 55 296 4.32E-70 T 14-09-2016 PAJ_RS06485 05e872e0578a51ec0f9a00751c4bfd42 384 Pfam PF13437 HlyD family secretion protein 176 288 6.3E-6 T 14-09-2016 PAJ_RS06485 05e872e0578a51ec0f9a00751c4bfd42 384 Pfam PF13533 Biotin-lipoyl like 64 113 3.5E-16 T 14-09-2016 PAJ_RS06485 05e872e0578a51ec0f9a00751c4bfd42 384 PANTHER PTHR30158:SF2 1 381 8.8E-172 T 14-09-2016 PAJ_RS06485 05e872e0578a51ec0f9a00751c4bfd42 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 372 5.4E-81 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS07245 0cebd8018396e9b5668cc6ae3a9fc6eb 405 Gene3D G3DSA:3.30.420.40 83 222 2.9E-30 T 14-09-2016 PAJ_RS07245 0cebd8018396e9b5668cc6ae3a9fc6eb 405 SUPERFAMILY SSF46785 12 77 6.45E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07245 0cebd8018396e9b5668cc6ae3a9fc6eb 405 Pfam PF00480 ROK family 97 391 5.6E-49 T 14-09-2016 IPR000600 ROK family PAJ_RS07245 0cebd8018396e9b5668cc6ae3a9fc6eb 405 SUPERFAMILY SSF53067 210 401 7.45E-41 T 14-09-2016 PAJ_RS07245 0cebd8018396e9b5668cc6ae3a9fc6eb 405 Gene3D G3DSA:1.10.10.10 12 80 8.9E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07245 0cebd8018396e9b5668cc6ae3a9fc6eb 405 PANTHER PTHR18964:SF127 63 402 6.5E-172 T 14-09-2016 PAJ_RS07245 0cebd8018396e9b5668cc6ae3a9fc6eb 405 SUPERFAMILY SSF53067 83 209 5.18E-21 T 14-09-2016 PAJ_RS07245 0cebd8018396e9b5668cc6ae3a9fc6eb 405 PANTHER PTHR18964 63 402 6.5E-172 T 14-09-2016 PAJ_RS07245 0cebd8018396e9b5668cc6ae3a9fc6eb 405 Gene3D G3DSA:3.30.420.40 223 372 9.6E-43 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Pfam PF01612 3'-5' exonuclease 329 516 5.5E-40 T 14-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 SUPERFAMILY SSF56672 523 928 2.67E-155 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 8.9E-55 T 14-09-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 TIGRFAM TIGR00593 pola: DNA polymerase I 9 928 8.1E-282 T 14-09-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 ProSitePatterns PS00447 DNA polymerase family A signature. 753 772 - T 14-09-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 SUPERFAMILY SSF53098 326 517 3.89E-56 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Gene3D G3DSA:3.40.50.1010 8 186 1.7E-72 T 14-09-2016 IPR029060 PIN domain-like PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Gene3D G3DSA:3.30.70.370 817 928 6.9E-68 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Gene3D G3DSA:3.30.70.370 663 710 6.9E-68 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Gene3D G3DSA:1.10.150.20 711 816 1.6E-35 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Gene3D G3DSA:1.10.150.20 187 253 1.9E-25 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 SMART SM00279 173 208 3.1E-12 T 14-09-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 SMART SM00475 7 268 2.1E-137 T 14-09-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 SMART SM00474 329 516 1.4E-44 T 14-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 SUPERFAMILY SSF88723 7 170 3.43E-57 T 14-09-2016 IPR029060 PIN domain-like PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Gene3D G3DSA:1.20.1060.10 542 662 7.2E-36 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 699 722 6.0E-79 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 790 801 6.0E-79 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 729 742 6.0E-79 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 844 860 6.0E-79 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 812 823 6.0E-79 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 654 676 6.0E-79 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 753 778 6.0E-79 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 875 888 6.0E-79 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 677 692 6.0E-79 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 SMART SM00482 685 892 5.8E-118 T 14-09-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 SUPERFAMILY SSF47807 171 291 1.3E-30 T 14-09-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 271 3.7E-29 T 14-09-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PANTHER PTHR10133 1 288 0.0 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PANTHER PTHR10133 315 927 0.0 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PANTHER PTHR10133:SF27 1 288 0.0 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 PANTHER PTHR10133:SF27 315 927 0.0 T 14-09-2016 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Pfam PF00476 DNA polymerase family A 551 925 9.5E-154 T 14-09-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17480 e8af629eb795eb1097debc9b94653e4e 928 Gene3D G3DSA:3.30.420.10 329 541 2.3E-83 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS01645 8a877577e2f5e0a6a025a5ad769f469d 163 Gene3D G3DSA:3.30.70.990 9 97 8.5E-37 T 14-09-2016 PAJ_RS01645 8a877577e2f5e0a6a025a5ad769f469d 163 Pfam PF04461 Protein of unknown function (DUF520) 2 162 1.6E-66 T 14-09-2016 IPR007551 Protein of unknown function DUF520 PAJ_RS01645 8a877577e2f5e0a6a025a5ad769f469d 163 SUPERFAMILY SSF89963 92 163 3.66E-28 T 14-09-2016 IPR007551 Protein of unknown function DUF520 PAJ_RS01645 8a877577e2f5e0a6a025a5ad769f469d 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 163 29.945 T 14-09-2016 IPR007551 Protein of unknown function DUF520 PAJ_RS01645 8a877577e2f5e0a6a025a5ad769f469d 163 PANTHER PTHR30476 1 163 3.2E-92 T 14-09-2016 PAJ_RS01645 8a877577e2f5e0a6a025a5ad769f469d 163 Gene3D G3DSA:3.30.70.860 98 163 1.3E-33 T 14-09-2016 PAJ_RS01645 8a877577e2f5e0a6a025a5ad769f469d 163 SUPERFAMILY SSF89963 2 89 6.89E-33 T 14-09-2016 IPR007551 Protein of unknown function DUF520 PAJ_RS01645 8a877577e2f5e0a6a025a5ad769f469d 163 PANTHER PTHR30476:SF0 1 163 3.2E-92 T 14-09-2016 PAJ_RS20900 3e8be1ea543e700d629a644d88d7369d 106 Pfam PF01371 Trp repressor protein 17 102 4.1E-27 T 14-09-2016 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 PAJ_RS20900 3e8be1ea543e700d629a644d88d7369d 106 PANTHER PTHR38025 15 103 1.5E-35 T 14-09-2016 PAJ_RS20900 3e8be1ea543e700d629a644d88d7369d 106 SUPERFAMILY SSF48295 12 103 9.94E-26 T 14-09-2016 IPR010921 Trp repressor/replication initiator GO:0043565 PAJ_RS20900 3e8be1ea543e700d629a644d88d7369d 106 PANTHER PTHR38025:SF1 15 103 1.5E-35 T 14-09-2016 PAJ_RS20900 3e8be1ea543e700d629a644d88d7369d 106 Gene3D G3DSA:1.10.1270.10 13 104 1.2E-39 T 14-09-2016 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 PAJ_RS20900 3e8be1ea543e700d629a644d88d7369d 106 Hamap MF_00475 Trp operon repressor [trpR]. 14 106 20.639 T 14-09-2016 IPR013335 Trp repressor, bacterial GO:0006355 PAJ_RS20900 3e8be1ea543e700d629a644d88d7369d 106 TIGRFAM TIGR01321 TrpR: trp operon repressor 16 103 7.5E-33 T 14-09-2016 IPR013335 Trp repressor, bacterial GO:0006355 PAJ_RS20900 3e8be1ea543e700d629a644d88d7369d 106 PIRSF PIRSF003196 5 106 1.6E-36 T 14-09-2016 IPR013335 Trp repressor, bacterial GO:0006355 PAJ_RS20900 3e8be1ea543e700d629a644d88d7369d 106 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 17 100 5.0E-27 T 14-09-2016 IPR013335 Trp repressor, bacterial GO:0006355 PAJ_RS05185 d4c625b0c2688eaf14f681696338f9f7 151 Gene3D G3DSA:3.40.630.30 4 138 6.2E-20 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05185 d4c625b0c2688eaf14f681696338f9f7 151 PANTHER PTHR23091 4 150 9.5E-14 T 14-09-2016 PAJ_RS05185 d4c625b0c2688eaf14f681696338f9f7 151 SUPERFAMILY SSF55729 1 136 1.86E-20 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05185 d4c625b0c2688eaf14f681696338f9f7 151 Pfam PF00583 Acetyltransferase (GNAT) family 69 130 8.2E-10 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 19 558 3.5E-294 T 14-09-2016 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 SUPERFAMILY SSF56014 150 344 2.22E-60 T 14-09-2016 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 Gene3D G3DSA:3.30.413.10 150 340 4.1E-71 T 14-09-2016 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 Gene3D G3DSA:3.30.413.10 429 557 8.3E-34 T 14-09-2016 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 PRINTS PR00397 Sirohaem Fe-binding site signature 477 495 1.2E-8 T 14-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 PRINTS PR00397 Sirohaem Fe-binding site signature 429 447 1.2E-8 T 14-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 477 493 - T 14-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 Gene3D G3DSA:3.90.480.10 74 146 1.4E-64 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 Gene3D G3DSA:3.90.480.10 342 422 1.4E-64 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 430 557 0.0031 T 14-09-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 173 329 1.5E-45 T 14-09-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 PANTHER PTHR11493:SF47 1 557 1.9E-271 T 14-09-2016 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 SUPERFAMILY SSF55124 13 142 2.13E-27 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 SUPERFAMILY SSF55124 346 421 1.46E-21 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 10 570 58.514 T 14-09-2016 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 80 139 1.6E-12 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 352 417 1.0E-14 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 PANTHER PTHR11493 1 557 1.9E-271 T 14-09-2016 PAJ_RS12930 5c144c975961a927781a052ec10c23b0 573 SUPERFAMILY SSF56014 429 559 1.27E-33 T 14-09-2016 PAJ_RS18305 9e4e543adbd0efb0382c05711350630f 293 PANTHER PTHR22572:SF105 2 267 1.2E-168 T 14-09-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 PAJ_RS18305 9e4e543adbd0efb0382c05711350630f 293 SUPERFAMILY SSF53448 1 286 2.48E-93 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS18305 9e4e543adbd0efb0382c05711350630f 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 1.1E-156 T 14-09-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 PAJ_RS18305 9e4e543adbd0efb0382c05711350630f 293 Pfam PF00483 Nucleotidyl transferase 2 238 2.3E-71 T 14-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 PAJ_RS18305 9e4e543adbd0efb0382c05711350630f 293 Gene3D G3DSA:3.90.550.10 1 264 1.9E-66 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS18305 9e4e543adbd0efb0382c05711350630f 293 PANTHER PTHR22572 2 267 1.2E-168 T 14-09-2016 PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 SMART SM01134 91 252 1.1E-59 T 14-09-2016 PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 Gene3D G3DSA:1.10.10.10 11 101 9.4E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 PANTHER PTHR30363 19 273 2.4E-178 T 14-09-2016 PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 SUPERFAMILY SSF100950 93 251 5.98E-26 T 14-09-2016 PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 PANTHER PTHR30363:SF19 19 273 2.4E-178 T 14-09-2016 PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 57 75 1.2E-11 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 43 57 1.2E-11 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 SUPERFAMILY SSF46785 23 92 8.69E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 Gene3D G3DSA:3.30.750.70 102 172 1.8E-13 T 14-09-2016 PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 Pfam PF00455 DeoR C terminal sensor domain 93 251 2.0E-48 T 14-09-2016 IPR014036 DeoR C-terminal sensor domain PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 SMART SM00420 25 77 4.1E-20 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 ProSitePatterns PS00894 DeoR-type HTH domain signature. 25 59 - T 14-09-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 PAJ_RS15200 f22317fbdf3ccfb77c6db1fa05685238 279 Pfam PF08220 DeoR-like helix-turn-helix domain 25 80 5.6E-20 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS07805 7792608c5c5f7899d3a86a50b658afbd 538 SUPERFAMILY SSF53850 35 524 5.61E-135 T 14-09-2016 PAJ_RS07805 7792608c5c5f7899d3a86a50b658afbd 538 PANTHER PTHR30290 1 537 1.7E-182 T 14-09-2016 PAJ_RS07805 7792608c5c5f7899d3a86a50b658afbd 538 PANTHER PTHR30290:SF10 1 537 1.7E-182 T 14-09-2016 PAJ_RS07805 7792608c5c5f7899d3a86a50b658afbd 538 PIRSF PIRSF002741 4 538 3.6E-105 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS07805 7792608c5c5f7899d3a86a50b658afbd 538 Gene3D G3DSA:3.40.190.10 153 304 2.7E-49 T 14-09-2016 PAJ_RS07805 7792608c5c5f7899d3a86a50b658afbd 538 Gene3D G3DSA:3.10.105.10 305 506 2.0E-58 T 14-09-2016 PAJ_RS07805 7792608c5c5f7899d3a86a50b658afbd 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 458 1.2E-83 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS09610 84b5ab62f364fb53d254ff2f38ef0bc2 275 PANTHER PTHR11183:SF3 145 271 4.1E-74 T 14-09-2016 PAJ_RS09610 84b5ab62f364fb53d254ff2f38ef0bc2 275 PANTHER PTHR11183:SF3 3 112 4.1E-74 T 14-09-2016 PAJ_RS09610 84b5ab62f364fb53d254ff2f38ef0bc2 275 Gene3D G3DSA:3.90.550.10 164 271 8.4E-70 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS09610 84b5ab62f364fb53d254ff2f38ef0bc2 275 Gene3D G3DSA:3.90.550.10 2 131 8.4E-70 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS09610 84b5ab62f364fb53d254ff2f38ef0bc2 275 Pfam PF01501 Glycosyl transferase family 8 6 250 1.7E-23 T 14-09-2016 IPR002495 Glycosyl transferase, family 8 GO:0016757 PAJ_RS09610 84b5ab62f364fb53d254ff2f38ef0bc2 275 PANTHER PTHR11183 145 271 4.1E-74 T 14-09-2016 PAJ_RS09610 84b5ab62f364fb53d254ff2f38ef0bc2 275 SUPERFAMILY SSF53448 4 269 2.81E-44 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS09610 84b5ab62f364fb53d254ff2f38ef0bc2 275 PANTHER PTHR11183 3 112 4.1E-74 T 14-09-2016 PAJ_RS02650 c5baa7e73d9c66ee4b77b079e1078f8e 319 Pfam PF04463 Protein of unknown function (DUF523) 7 150 1.6E-39 T 14-09-2016 IPR007553 Domain of unknown function DUF523 PAJ_RS02650 c5baa7e73d9c66ee4b77b079e1078f8e 319 PANTHER PTHR30087:SF0 1 319 3.9E-135 T 14-09-2016 PAJ_RS02650 c5baa7e73d9c66ee4b77b079e1078f8e 319 PIRSF PIRSF037004 1 319 1.1E-128 T 14-09-2016 IPR017087 Uncharacterised conserved protein UCP037004 PAJ_RS02650 c5baa7e73d9c66ee4b77b079e1078f8e 319 PANTHER PTHR30087 1 319 3.9E-135 T 14-09-2016 PAJ_RS02650 c5baa7e73d9c66ee4b77b079e1078f8e 319 Pfam PF08349 Protein of unknown function (DUF1722) 193 310 2.1E-42 T 14-09-2016 IPR013560 Domain of unknown function DUF1722 PAJ_RS19560 b7632664e9c3df5d97e687d9a651b04b 331 Pfam PF00535 Glycosyl transferase family 2 8 108 1.9E-32 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS19560 b7632664e9c3df5d97e687d9a651b04b 331 SUPERFAMILY SSF53448 6 221 2.86E-47 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS19560 b7632664e9c3df5d97e687d9a651b04b 331 Gene3D G3DSA:3.90.550.10 2 197 8.5E-48 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS19560 b7632664e9c3df5d97e687d9a651b04b 331 PANTHER PTHR22916:SF24 1 330 8.3E-50 T 14-09-2016 PAJ_RS19560 b7632664e9c3df5d97e687d9a651b04b 331 PANTHER PTHR22916 1 330 8.3E-50 T 14-09-2016 PAJ_RS12345 b259a6d398c17a9461bcd3f3a883e854 387 Pfam PF01979 Amidohydrolase family 208 355 3.0E-9 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 PAJ_RS12345 b259a6d398c17a9461bcd3f3a883e854 387 SUPERFAMILY SSF51556 57 329 4.08E-49 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS12345 b259a6d398c17a9461bcd3f3a883e854 387 SUPERFAMILY SSF51338 3 57 1.09E-16 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS12345 b259a6d398c17a9461bcd3f3a883e854 387 SUPERFAMILY SSF51338 334 382 1.09E-16 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS12345 b259a6d398c17a9461bcd3f3a883e854 387 PANTHER PTHR11647:SF73 1 92 1.1E-12 T 14-09-2016 PAJ_RS12345 b259a6d398c17a9461bcd3f3a883e854 387 Gene3D G3DSA:2.30.40.10 1 65 1.6E-17 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS12345 b259a6d398c17a9461bcd3f3a883e854 387 PANTHER PTHR11647 1 92 1.1E-12 T 14-09-2016 PAJ_RS12345 b259a6d398c17a9461bcd3f3a883e854 387 Gene3D G3DSA:3.20.20.140 66 331 3.1E-90 T 14-09-2016 PAJ_RS17145 ca7425bca92f182df4ed3513fae09dba 169 Pfam PF07813 LTXXQ motif family protein 43 139 5.6E-18 T 14-09-2016 IPR012899 LTXXQ motif family protein GO:0042597 PAJ_RS17145 ca7425bca92f182df4ed3513fae09dba 169 PANTHER PTHR38102 1 162 2.4E-62 T 14-09-2016 PAJ_RS17145 ca7425bca92f182df4ed3513fae09dba 169 PANTHER PTHR38102:SF2 1 162 2.4E-62 T 14-09-2016 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 Gene3D G3DSA:1.10.287.950 372 576 2.0E-58 T 14-09-2016 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 279 299 4.6E-57 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 378 407 4.6E-57 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 484 513 4.6E-57 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 532 561 4.6E-57 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 455 482 4.6E-57 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 SUPERFAMILY SSF58104 324 603 1.11E-71 T 14-09-2016 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 Pfam PF00672 HAMP domain 285 353 7.8E-15 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 SMART SM00304 304 356 5.5E-10 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 PANTHER PTHR32089:SF35 260 606 1.8E-144 T 14-09-2016 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 417 603 1.9E-59 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 Pfam PF16591 Helical bimodular sensor domain 38 280 1.9E-11 T 14-09-2016 IPR032255 Helical bimodular sensor domain PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 SMART SM01358 36 282 1.0E-20 T 14-09-2016 IPR032255 Helical bimodular sensor domain PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 PANTHER PTHR32089 260 606 1.8E-144 T 14-09-2016 PAJ_RS10910 fb1aa72991d2916aab85612d97faa393 606 SMART SM00283 357 604 1.1E-84 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 PANTHER PTHR24031 1 440 3.6E-232 T 14-09-2016 PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 SUPERFAMILY SSF52540 72 354 6.11E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 5 458 67.619 T 14-09-2016 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 14-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 SMART SM00487 22 219 2.6E-56 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 PANTHER PTHR24031:SF180 1 440 3.6E-232 T 14-09-2016 PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 Pfam PF00270 DEAD/DEAH box helicase 27 191 1.7E-47 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 SMART SM00490 255 336 2.9E-30 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 Pfam PF03880 DbpA RNA binding domain 385 453 1.0E-22 T 14-09-2016 IPR005580 DbpA, RNA-binding domain PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 Gene3D G3DSA:3.40.50.300 214 367 7.4E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 Gene3D G3DSA:3.40.50.300 2 207 6.0E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01325 baf1abcbf8eb66307e9bb7a1f805e082 459 Pfam PF00271 Helicase conserved C-terminal domain 227 336 3.1E-27 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS16170 22494f8f23162f805b240c8d85b217a4 89 PANTHER PTHR34156 2 89 9.4E-33 T 14-09-2016 PAJ_RS16170 22494f8f23162f805b240c8d85b217a4 89 PANTHER PTHR34156:SF9 2 89 9.4E-33 T 14-09-2016 PAJ_RS16170 22494f8f23162f805b240c8d85b217a4 89 Gene3D G3DSA:3.30.1660.10 18 89 1.0E-25 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS16170 22494f8f23162f805b240c8d85b217a4 89 SUPERFAMILY SSF159871 3 89 2.88E-24 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS16170 22494f8f23162f805b240c8d85b217a4 89 Pfam PF07338 Protein of unknown function (DUF1471) 36 89 2.2E-19 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PANTHER PTHR24322 15 142 1.0E-54 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PANTHER PTHR24322 158 190 1.0E-54 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 Gene3D G3DSA:3.40.50.720 6 252 2.4E-80 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 250 3.6E-57 T 14-09-2016 PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 3.7E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 3.7E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 3.7E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 6 253 2.6E-132 T 14-09-2016 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.12+1.1.1.127|MetaCyc: PWY-5515|MetaCyc: PWY-6507|MetaCyc: PWY-7562 PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PANTHER PTHR24322:SF402 15 142 1.0E-54 T 14-09-2016 PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 SUPERFAMILY SSF51735 6 252 3.48E-75 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.2E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.2E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.2E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.2E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.2E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.2E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20565 7aab96ba017ed7eff7f694b401f3d07b 253 PANTHER PTHR24322:SF402 158 190 1.0E-54 T 14-09-2016 PAJ_RS06700 15100acf85f2c0aadd72b9cfd471b2b1 223 SUPERFAMILY SSF52172 1 129 8.6E-16 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS06700 15100acf85f2c0aadd72b9cfd471b2b1 223 PANTHER PTHR26402:SF537 1 220 1.2E-45 T 14-09-2016 PAJ_RS06700 15100acf85f2c0aadd72b9cfd471b2b1 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 219 4.1E-14 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS06700 15100acf85f2c0aadd72b9cfd471b2b1 223 SUPERFAMILY SSF46894 118 220 4.42E-19 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS06700 15100acf85f2c0aadd72b9cfd471b2b1 223 Gene3D G3DSA:1.10.10.10 124 221 4.7E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06700 15100acf85f2c0aadd72b9cfd471b2b1 223 Gene3D G3DSA:3.40.50.2300 1 123 2.9E-16 T 14-09-2016 PAJ_RS06700 15100acf85f2c0aadd72b9cfd471b2b1 223 Pfam PF00072 Response regulator receiver domain 3 111 1.2E-7 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS06700 15100acf85f2c0aadd72b9cfd471b2b1 223 SMART SM00862 145 219 1.2E-9 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS06700 15100acf85f2c0aadd72b9cfd471b2b1 223 PANTHER PTHR26402 1 220 1.2E-45 T 14-09-2016 PAJ_RS06700 15100acf85f2c0aadd72b9cfd471b2b1 223 SMART SM00448 1 112 0.0087 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS14020 c11fb954299b59162d0796ace2d9df1f 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 126 1.1E-14 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PAJ_RS14020 c11fb954299b59162d0796ace2d9df1f 133 PANTHER PTHR36437 1 132 1.3E-51 T 14-09-2016 PAJ_RS14020 c11fb954299b59162d0796ace2d9df1f 133 Gene3D G3DSA:3.10.180.10 8 131 1.2E-20 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS14020 c11fb954299b59162d0796ace2d9df1f 133 SUPERFAMILY SSF54593 8 131 4.7E-26 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS14020 c11fb954299b59162d0796ace2d9df1f 133 PANTHER PTHR36437:SF2 1 132 1.3E-51 T 14-09-2016 PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 174 229 9.4E-8 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 PANTHER PTHR30251:SF7 1 239 1.3E-77 T 14-09-2016 PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 Gene3D G3DSA:2.60.40.1070 159 233 9.3E-15 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 SUPERFAMILY SSF49354 26 152 5.76E-30 T 14-09-2016 IPR008962 PapD-like PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 PRINTS PR00969 Pili chaperone signature 134 149 1.2E-22 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 PRINTS PR00969 Pili chaperone signature 107 124 1.2E-22 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 PRINTS PR00969 Pili chaperone signature 29 38 1.2E-22 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 PRINTS PR00969 Pili chaperone signature 78 99 1.2E-22 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 PRINTS PR00969 Pili chaperone signature 169 184 1.2E-22 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 Gene3D G3DSA:2.60.40.360 29 152 6.9E-31 T 14-09-2016 IPR008962 PapD-like PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 152 9.0E-33 T 14-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 106 123 - T 14-09-2016 IPR018046 Pili assembly chaperone, conserved site PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 SUPERFAMILY SSF49584 146 233 1.09E-14 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS04735 a00edf557e216f676ac991b5d0636403 242 PANTHER PTHR30251 1 239 1.3E-77 T 14-09-2016 PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 PANTHER PTHR33164 9 131 1.7E-23 T 14-09-2016 PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 SUPERFAMILY SSF46785 5 136 4.49E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 ProSitePatterns PS01117 MarR-type HTH domain signature. 63 97 - T 14-09-2016 IPR023187 Transcriptional regulator MarR-type, conserved site PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 Gene3D G3DSA:1.10.10.10 4 136 1.8E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 Pfam PF01047 MarR family 31 87 1.9E-10 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 PANTHER PTHR33164:SF16 9 131 1.7E-23 T 14-09-2016 PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 2.1E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 2.1E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 2.1E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 2.1E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS05360 5eb4bf3648e8496234f25abfa8156265 140 SMART SM00347 25 124 7.5E-13 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS05970 e70c71f5a5e3544c7bf23a1f4697cd18 365 SUPERFAMILY SSF51395 4 363 2.02E-117 T 14-09-2016 PAJ_RS05970 e70c71f5a5e3544c7bf23a1f4697cd18 365 Gene3D G3DSA:3.20.20.70 4 364 1.3E-129 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS05970 e70c71f5a5e3544c7bf23a1f4697cd18 365 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 344 2.0E-88 T 14-09-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PAJ_RS05970 e70c71f5a5e3544c7bf23a1f4697cd18 365 PANTHER PTHR22893 1 365 3.8E-158 T 14-09-2016 PAJ_RS05970 e70c71f5a5e3544c7bf23a1f4697cd18 365 PANTHER PTHR22893:SF14 1 365 3.8E-158 T 14-09-2016 PAJ_RS17305 069418c5e6a467e0fdcfe952c66c4408 406 Pfam PF02441 Flavoprotein 7 135 4.5E-32 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 PAJ_RS17305 069418c5e6a467e0fdcfe952c66c4408 406 PANTHER PTHR14359 4 406 2.7E-196 T 14-09-2016 PAJ_RS17305 069418c5e6a467e0fdcfe952c66c4408 406 Gene3D G3DSA:3.40.50.1950 5 181 1.0E-62 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 PAJ_RS17305 069418c5e6a467e0fdcfe952c66c4408 406 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 188 371 7.2E-75 T 14-09-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 PAJ_RS17305 069418c5e6a467e0fdcfe952c66c4408 406 Gene3D G3DSA:3.40.50.10300 185 404 3.7E-88 T 14-09-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 PAJ_RS17305 069418c5e6a467e0fdcfe952c66c4408 406 SUPERFAMILY SSF52507 4 180 5.23E-58 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 PAJ_RS17305 069418c5e6a467e0fdcfe952c66c4408 406 PANTHER PTHR14359:SF20 4 406 2.7E-196 T 14-09-2016 PAJ_RS17305 069418c5e6a467e0fdcfe952c66c4408 406 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 397 5.2E-156 T 14-09-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 PAJ_RS17305 069418c5e6a467e0fdcfe952c66c4408 406 SUPERFAMILY SSF102645 185 402 3.92E-80 T 14-09-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 Gene3D G3DSA:2.70.70.10 459 610 1.0E-50 T 14-09-2016 PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 Gene3D G3DSA:3.30.1360.60 1 81 3.0E-25 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 Pfam PF02378 Phosphotransferase system, EIIC 104 384 1.7E-34 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 SUPERFAMILY SSF51261 460 603 8.55E-47 T 14-09-2016 IPR011055 Duplicated hybrid motif PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 465 585 1.7E-39 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 TIGRFAM TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component 3 609 2.7E-197 T 14-09-2016 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component GO:0005886|GO:0008982|GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 PANTHER PTHR30175 1 560 4.7E-232 T 14-09-2016 PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 Pfam PF00367 phosphotransferase system, EIIB 8 41 6.9E-13 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 SUPERFAMILY SSF55604 6 80 2.22E-21 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 464 588 5.8E-43 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS04985 ff0d196ec4114fead5207d4b14851deb 615 PANTHER PTHR30175:SF1 1 560 4.7E-232 T 14-09-2016 PAJ_RS14545 58a1efc7ffce130956ff1ccb00a9706c 211 SUPERFAMILY SSF55811 8 208 5.15E-47 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS14545 58a1efc7ffce130956ff1ccb00a9706c 211 Gene3D G3DSA:3.90.79.10 6 208 1.4E-51 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS14545 58a1efc7ffce130956ff1ccb00a9706c 211 PANTHER PTHR11839:SF5 1 210 4.7E-116 T 14-09-2016 PAJ_RS14545 58a1efc7ffce130956ff1ccb00a9706c 211 Pfam PF00293 NUDIX domain 61 176 3.6E-9 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS14545 58a1efc7ffce130956ff1ccb00a9706c 211 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 14 199 9.7E-68 T 14-09-2016 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 PAJ_RS14545 58a1efc7ffce130956ff1ccb00a9706c 211 PANTHER PTHR11839 1 210 4.7E-116 T 14-09-2016 PAJ_RS02340 fb7acaf9c7465b765f6b5e40b75a1c95 421 SMART SM00014 171 291 8.5E-8 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS02340 fb7acaf9c7465b765f6b5e40b75a1c95 421 Pfam PF01569 PAP2 superfamily 179 284 1.9E-13 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS02340 fb7acaf9c7465b765f6b5e40b75a1c95 421 SUPERFAMILY SSF48317 117 309 6.54E-30 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS02340 fb7acaf9c7465b765f6b5e40b75a1c95 421 Gene3D G3DSA:1.20.144.10 97 311 3.9E-50 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS20570 6c97130985b2d7ea3369ff4c8b9299d7 278 Pfam PF04962 KduI/IolB family 69 272 3.4E-33 T 14-09-2016 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 PAJ_RS20570 6c97130985b2d7ea3369ff4c8b9299d7 278 Gene3D G3DSA:2.60.120.520 20 133 7.1E-53 T 14-09-2016 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 PAJ_RS20570 6c97130985b2d7ea3369ff4c8b9299d7 278 Gene3D G3DSA:2.60.120.500 134 278 1.5E-75 T 14-09-2016 IPR027447 5-keto-4-deoxyuronate isomerase, C-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 PAJ_RS20570 6c97130985b2d7ea3369ff4c8b9299d7 278 SUPERFAMILY SSF51182 2 262 2.47E-103 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS20570 6c97130985b2d7ea3369ff4c8b9299d7 278 PANTHER PTHR38461 1 278 3.5E-167 T 14-09-2016 PAJ_RS20570 6c97130985b2d7ea3369ff4c8b9299d7 278 PIRSF PIRSF006625 1 278 2.7E-130 T 14-09-2016 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 PAJ_RS20570 6c97130985b2d7ea3369ff4c8b9299d7 278 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 278 55.633 T 14-09-2016 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 4 357 5.3E-103 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 Pfam PF07687 Peptidase dimerisation domain 176 271 1.4E-6 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 SUPERFAMILY SSF55031 173 286 4.45E-29 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 PANTHER PTHR11014:SF63 1 367 3.8E-141 T 14-09-2016 PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 PANTHER PTHR11014 1 367 3.8E-141 T 14-09-2016 PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 Pfam PF01546 Peptidase family M20/M25/M40 63 366 4.5E-29 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 SUPERFAMILY SSF53187 288 368 1.44E-78 T 14-09-2016 PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 SUPERFAMILY SSF53187 2 187 1.44E-78 T 14-09-2016 PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 PIRSF PIRSF005962 1 373 5.9E-121 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 Gene3D G3DSA:3.40.630.10 3 168 5.4E-91 T 14-09-2016 PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 Gene3D G3DSA:3.40.630.10 288 368 5.4E-91 T 14-09-2016 PAJ_RS09470 47b8f551d6dee3004634e65ed47233f1 377 Gene3D G3DSA:3.30.70.360 171 287 4.3E-37 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 Gene3D G3DSA:3.30.70.260 238 343 2.5E-32 T 14-09-2016 PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 SMART SM00382 30 218 1.2E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 SMART SM00930 265 340 3.0E-25 T 14-09-2016 IPR018449 NIL domain PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 PANTHER PTHR24220 3 316 7.7E-188 T 14-09-2016 PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 SUPERFAMILY SSF55021 248 343 7.67E-26 T 14-09-2016 PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 Gene3D G3DSA:3.40.50.300 1 237 4.8E-85 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 SUPERFAMILY SSF52540 1 240 2.42E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 Pfam PF00005 ABC transporter 21 169 6.5E-36 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 8.4E-196 T 14-09-2016 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 PANTHER PTHR24220:SF455 3 316 7.7E-188 T 14-09-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 PAJ_RS00835 b58c51cbc709a138fb93877c6032c68f 343 Pfam PF09383 NIL domain 268 339 3.0E-20 T 14-09-2016 IPR018449 NIL domain PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 PANTHER PTHR11835:SF52 275 416 4.2E-240 T 14-09-2016 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 PANTHER PTHR11835:SF52 188 255 4.2E-240 T 14-09-2016 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 SUPERFAMILY SSF53659 3 416 6.72E-148 T 14-09-2016 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 29 412 5.1E-116 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 PANTHER PTHR11835 275 416 4.2E-240 T 14-09-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 Gene3D G3DSA:3.40.718.10 10 416 2.1E-165 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 303 322 - T 14-09-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 PANTHER PTHR11835 188 255 4.2E-240 T 14-09-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 SMART SM01329 28 412 1.2E-175 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 PANTHER PTHR11835:SF52 1 164 4.2E-240 T 14-09-2016 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 416 2.2E-233 T 14-09-2016 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 PAJ_RS04715 0a11790e417e87455c1170baa52f4c58 416 PANTHER PTHR11835 1 164 4.2E-240 T 14-09-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 361 388 7.1E-57 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 390 419 7.1E-57 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 21 7.1E-57 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 438 467 7.1E-57 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 284 313 7.1E-57 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 SMART SM00283 263 510 5.8E-88 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 Pfam PF00672 HAMP domain 189 258 3.1E-11 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 509 2.4E-60 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 SUPERFAMILY SSF47170 66 169 1.44E-7 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 Gene3D G3DSA:1.10.287.950 278 482 2.2E-58 T 14-09-2016 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 SUPERFAMILY SSF58104 230 511 3.53E-69 T 14-09-2016 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 PANTHER PTHR32089:SF48 167 513 9.0E-141 T 14-09-2016 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 SMART SM00304 208 262 2.9E-8 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 Pfam PF02203 Tar ligand binding domain homologue 8 149 5.7E-16 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 PANTHER PTHR32089 167 513 9.0E-141 T 14-09-2016 PAJ_RS19160 e9ea3a7664841e2c4fea7d1923a28c91 514 Gene3D G3DSA:1.20.120.30 73 144 6.3E-4 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS02415 e13c7fcda5b0b9e5476595d90471b5f6 321 SUPERFAMILY SSF102114 53 316 2.09E-66 T 14-09-2016 PAJ_RS02415 e13c7fcda5b0b9e5476595d90471b5f6 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 8.5E-159 T 14-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PAJ_RS02415 e13c7fcda5b0b9e5476595d90471b5f6 321 PIRSF PIRSF005963 1 320 1.4E-131 T 14-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PAJ_RS02415 e13c7fcda5b0b9e5476595d90471b5f6 321 Gene3D G3DSA:3.20.20.70 55 313 1.1E-71 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS02415 e13c7fcda5b0b9e5476595d90471b5f6 321 PANTHER PTHR10949 4 312 4.4E-181 T 14-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PAJ_RS02415 e13c7fcda5b0b9e5476595d90471b5f6 321 SMART SM00729 84 293 7.7E-15 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PAJ_RS02415 e13c7fcda5b0b9e5476595d90471b5f6 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 156.96 T 14-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PAJ_RS02415 e13c7fcda5b0b9e5476595d90471b5f6 321 Pfam PF04055 Radical SAM superfamily 91 251 4.0E-14 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS02415 e13c7fcda5b0b9e5476595d90471b5f6 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 28 73 1.4E-6 T 14-09-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 1.4E-49 T 14-09-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 SUPERFAMILY SSF69742 1 158 5.1E-47 T 14-09-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 PIRSF PIRSF000445 1 418 5.2E-155 T 14-09-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 31.09 T 14-09-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 417 2.1E-159 T 14-09-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 172 306 2.7E-48 T 14-09-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 14-09-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 Gene3D G3DSA:3.40.50.720 184 358 2.4E-39 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 416 1.5E-23 T 14-09-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 SUPERFAMILY SSF69075 317 417 3.14E-27 T 14-09-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 PANTHER PTHR21089 272 359 1.0E-145 T 14-09-2016 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 PANTHER PTHR21089 15 256 1.0E-145 T 14-09-2016 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 PANTHER PTHR21089:SF3 272 359 1.0E-145 T 14-09-2016 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 PANTHER PTHR21089:SF3 15 256 1.0E-145 T 14-09-2016 PAJ_RS05495 8eab274d4c25dab83ba83364108bdecb 418 SUPERFAMILY SSF51735 162 315 3.71E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS14300 75a818f10b33e3030c2a2f36dcf96be4 333 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 5 327 4.2E-105 T 14-09-2016 IPR019949 Luciferase family oxidoreductase, group 1 PAJ_RS14300 75a818f10b33e3030c2a2f36dcf96be4 333 PANTHER PTHR30137:SF6 1 322 2.8E-82 T 14-09-2016 PAJ_RS14300 75a818f10b33e3030c2a2f36dcf96be4 333 SUPERFAMILY SSF51679 4 327 2.75E-64 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS14300 75a818f10b33e3030c2a2f36dcf96be4 333 PANTHER PTHR30137 1 322 2.8E-82 T 14-09-2016 PAJ_RS14300 75a818f10b33e3030c2a2f36dcf96be4 333 Gene3D G3DSA:3.20.20.30 4 328 7.4E-74 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS14300 75a818f10b33e3030c2a2f36dcf96be4 333 Pfam PF00296 Luciferase-like monooxygenase 18 297 2.6E-31 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS17930 bf80566239826c06ff4624e931fed222 138 Pfam PF00011 Hsp20/alpha crystallin family 42 136 6.2E-22 T 14-09-2016 IPR002068 Alpha crystallin/Hsp20 domain PAJ_RS17930 bf80566239826c06ff4624e931fed222 138 PANTHER PTHR11527 1 136 1.9E-46 T 14-09-2016 IPR031107 Small heat shock protein HSP20 PAJ_RS17930 bf80566239826c06ff4624e931fed222 138 SUPERFAMILY SSF49764 30 136 5.58E-21 T 14-09-2016 IPR008978 HSP20-like chaperone PAJ_RS17930 bf80566239826c06ff4624e931fed222 138 PANTHER PTHR11527:SF127 1 136 1.9E-46 T 14-09-2016 PAJ_RS17930 bf80566239826c06ff4624e931fed222 138 Gene3D G3DSA:2.60.40.790 5 136 9.1E-18 T 14-09-2016 IPR008978 HSP20-like chaperone PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 PANTHER PTHR24031 1 153 3.9E-202 T 14-09-2016 PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 SMART SM00490 263 344 9.3E-10 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 PANTHER PTHR24031 233 366 3.9E-202 T 14-09-2016 PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 PANTHER PTHR24031:SF319 442 584 3.9E-202 T 14-09-2016 PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 PANTHER PTHR24031:SF319 172 208 3.9E-202 T 14-09-2016 PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 PANTHER PTHR24031 442 584 3.9E-202 T 14-09-2016 PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 PANTHER PTHR24031 172 208 3.9E-202 T 14-09-2016 PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 Pfam PF00271 Helicase conserved C-terminal domain 241 343 5.8E-12 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 SUPERFAMILY SSF57829 424 465 6.41E-7 T 14-09-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 SMART SM00487 1 185 2.2E-19 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 SUPERFAMILY SSF52540 237 357 6.19E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 SUPERFAMILY SSF52540 50 169 6.19E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 PANTHER PTHR24031:SF319 233 366 3.9E-202 T 14-09-2016 PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 PANTHER PTHR24031:SF319 1 153 3.9E-202 T 14-09-2016 PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 Pfam PF04851 Type III restriction enzyme, res subunit 3 154 1.3E-25 T 14-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 Gene3D G3DSA:3.40.50.300 3 155 1.9E-30 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10335 b39f0293942cf06053eb5e1a8854c857 584 Gene3D G3DSA:3.40.50.300 237 355 6.6E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 Pfam PF12626 Polymerase A arginine-rich C-terminus 312 431 4.9E-40 T 14-09-2016 IPR025866 Polymerase A arginine-rich C-terminal domain PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 2 436 37.257 T 14-09-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 194 254 8.8E-19 T 14-09-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 Pfam PF01743 Poly A polymerase head domain 34 167 2.2E-39 T 14-09-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 SUPERFAMILY SSF81891 165 402 9.03E-49 T 14-09-2016 PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 3 433 4.1E-152 T 14-09-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 Gene3D G3DSA:1.10.3090.10 167 403 1.3E-48 T 14-09-2016 PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 PANTHER PTHR13734 1 301 7.9E-131 T 14-09-2016 PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 Gene3D G3DSA:3.30.460.10 16 166 4.4E-50 T 14-09-2016 PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 PANTHER PTHR13734:SF47 1 301 7.9E-131 T 14-09-2016 PAJ_RS00570 ebf6a253982172ddb5bbf448b710faf6 443 SUPERFAMILY SSF81301 6 163 1.63E-39 T 14-09-2016 PAJ_RS00135 cd66dd1c9a071b6fe400827b798c8c09 285 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 274 4.2E-149 T 14-09-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 PAJ_RS00135 cd66dd1c9a071b6fe400827b798c8c09 285 Pfam PF00149 Calcineurin-like phosphoesterase 1 127 1.2E-13 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PAJ_RS00135 cd66dd1c9a071b6fe400827b798c8c09 285 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 51.378 T 14-09-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 PAJ_RS00135 cd66dd1c9a071b6fe400827b798c8c09 285 SUPERFAMILY SSF56300 1 259 3.01E-60 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS00135 cd66dd1c9a071b6fe400827b798c8c09 285 Gene3D G3DSA:3.60.21.10 169 267 6.3E-55 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS00135 cd66dd1c9a071b6fe400827b798c8c09 285 Gene3D G3DSA:3.60.21.10 1 132 6.3E-55 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS00135 cd66dd1c9a071b6fe400827b798c8c09 285 PIRSF PIRSF000903 1 274 8.4E-123 T 14-09-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 PAJ_RS00135 cd66dd1c9a071b6fe400827b798c8c09 285 PANTHER PTHR24032:SF27 1 271 5.3E-169 T 14-09-2016 PAJ_RS00135 cd66dd1c9a071b6fe400827b798c8c09 285 PANTHER PTHR24032 1 271 5.3E-169 T 14-09-2016 PAJ_RS18785 4d66bc4f04922cbf94c20f61e49193c9 356 SUPERFAMILY SSF53807 28 351 2.55E-56 T 14-09-2016 PAJ_RS18785 4d66bc4f04922cbf94c20f61e49193c9 356 Pfam PF01497 Periplasmic binding protein 44 297 4.0E-31 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 PAJ_RS18785 4d66bc4f04922cbf94c20f61e49193c9 356 Gene3D G3DSA:3.40.50.1980 176 334 2.9E-38 T 14-09-2016 PAJ_RS18785 4d66bc4f04922cbf94c20f61e49193c9 356 Gene3D G3DSA:3.40.50.1980 24 175 7.4E-29 T 14-09-2016 PAJ_RS18785 4d66bc4f04922cbf94c20f61e49193c9 356 PANTHER PTHR30535:SF16 156 356 5.5E-113 T 14-09-2016 PAJ_RS18785 4d66bc4f04922cbf94c20f61e49193c9 356 PANTHER PTHR30535:SF16 5 139 5.5E-113 T 14-09-2016 PAJ_RS18785 4d66bc4f04922cbf94c20f61e49193c9 356 PANTHER PTHR30535 156 356 5.5E-113 T 14-09-2016 PAJ_RS18785 4d66bc4f04922cbf94c20f61e49193c9 356 PANTHER PTHR30535 5 139 5.5E-113 T 14-09-2016 PAJ_RS09030 08e7b429f452091910e5a56f3310fc14 110 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 2 108 3.2E-25 T 14-09-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 PAJ_RS09030 08e7b429f452091910e5a56f3310fc14 110 PANTHER PTHR33988 1 109 2.0E-27 T 14-09-2016 PAJ_RS09030 08e7b429f452091910e5a56f3310fc14 110 Gene3D G3DSA:2.30.30.110 1 109 3.4E-39 T 14-09-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor PAJ_RS09030 08e7b429f452091910e5a56f3310fc14 110 PIRSF PIRSF033490 1 110 1.6E-21 T 14-09-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 PAJ_RS09030 08e7b429f452091910e5a56f3310fc14 110 SUPERFAMILY SSF50118 1 109 6.98E-32 T 14-09-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 PANTHER PTHR21581:SF5 1 386 2.1E-217 T 14-09-2016 PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 SUPERFAMILY SSF56601 3 278 1.41E-76 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 PANTHER PTHR21581 1 386 2.1E-217 T 14-09-2016 PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 146 159 4.4E-18 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 119 136 4.4E-18 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 60 71 4.4E-18 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 280 371 6.7E-22 T 14-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 28 260 3.4E-92 T 14-09-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 SMART SM00936 280 371 6.9E-28 T 14-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 Gene3D G3DSA:2.60.410.10 280 371 1.4E-26 T 14-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 SUPERFAMILY SSF69189 280 373 2.75E-23 T 14-09-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS09715 1058a8893ac946e1bf0457171e81bc92 386 Gene3D G3DSA:3.40.710.10 26 279 1.5E-91 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 4.4E-18 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 Pfam PF13404 AsnC-type helix-turn-helix domain 5 42 2.5E-13 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 PANTHER PTHR30154 1 147 2.5E-46 T 14-09-2016 PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 2.1E-10 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 2.1E-10 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 2.1E-10 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 Gene3D G3DSA:1.10.10.10 5 56 6.3E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 SUPERFAMILY SSF54909 66 149 4.83E-15 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 PANTHER PTHR30154:SF0 1 147 2.5E-46 T 14-09-2016 PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 Gene3D G3DSA:3.30.70.920 57 141 6.7E-23 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 SUPERFAMILY SSF46785 3 63 1.26E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18960 67008ff05cfb5160384d364604cd02e0 163 SMART SM00344 4 113 5.3E-29 T 14-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PAJ_RS12760 6e0e44d0d2edd4d56f138ee57c893961 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 2.0E-20 T 14-09-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PAJ_RS12760 6e0e44d0d2edd4d56f138ee57c893961 61 Pfam PF02599 Global regulator protein family 1 52 2.6E-27 T 14-09-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PAJ_RS12760 6e0e44d0d2edd4d56f138ee57c893961 61 PANTHER PTHR34984 1 61 6.1E-33 T 14-09-2016 PAJ_RS12760 6e0e44d0d2edd4d56f138ee57c893961 61 Hamap MF_00167 Carbon storage regulator [csrA]. 1 61 20.432 T 14-09-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PAJ_RS12760 6e0e44d0d2edd4d56f138ee57c893961 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 58 5.1E-31 T 14-09-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PAJ_RS12760 6e0e44d0d2edd4d56f138ee57c893961 61 SUPERFAMILY SSF117130 1 54 3.66E-21 T 14-09-2016 PAJ_RS12760 6e0e44d0d2edd4d56f138ee57c893961 61 PANTHER PTHR34984:SF1 1 61 6.1E-33 T 14-09-2016 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 939 1207 6.3E-125 T 14-09-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 TIGRFAM TIGR02082 metH: methionine synthase 13 1192 0.0 T 14-09-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 Pfam PF02574 Homocysteine S-methyltransferase 17 325 6.1E-89 T 14-09-2016 IPR003726 Homocysteine-binding domain PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 PANTHER PTHR21091 1 398 3.8E-160 T 14-09-2016 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 SUPERFAMILY SSF51717 356 630 3.01E-87 T 14-09-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 SMART SM01018 657 740 1.2E-42 T 14-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 Pfam PF02310 B12 binding domain 748 841 2.2E-18 T 14-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 SUPERFAMILY SSF52242 744 894 5.1E-47 T 14-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 PIRSF PIRSF000381 1 1195 0.0 T 14-09-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 SUPERFAMILY SSF82282 7 399 2.88E-115 T 14-09-2016 IPR003726 Homocysteine-binding domain PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 Gene3D G3DSA:3.20.20.20 364 636 1.0E-112 T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 Gene3D G3DSA:3.40.50.280 745 895 3.6E-65 T 14-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 PANTHER PTHR21091:SF97 1 398 3.8E-160 T 14-09-2016 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 Gene3D G3DSA:1.10.1240.10 650 737 2.4E-38 T 14-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 Gene3D G3DSA:3.10.196.10 957 1226 4.7E-115 T 14-09-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 SUPERFAMILY SSF56507 903 1226 1.05E-132 T 14-09-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 SUPERFAMILY SSF47644 653 739 2.09E-28 T 14-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 Pfam PF00809 Pterin binding enzyme 360 598 4.1E-61 T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 Gene3D G3DSA:3.20.20.330 5 363 2.3E-124 T 14-09-2016 IPR003726 Homocysteine-binding domain PAJ_RS18840 4fc4e8f90c17a0ffd77117338712e56c 1227 Pfam PF02607 B12 binding domain 660 733 1.5E-24 T 14-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PAJ_RS20085 428707006335f3facac0791350f35820 178 PANTHER PTHR13947 8 178 1.0E-55 T 14-09-2016 PAJ_RS20085 428707006335f3facac0791350f35820 178 PANTHER PTHR13947:SF7 8 178 1.0E-55 T 14-09-2016 PAJ_RS20085 428707006335f3facac0791350f35820 178 Pfam PF00583 Acetyltransferase (GNAT) family 77 155 3.6E-11 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS20085 428707006335f3facac0791350f35820 178 Gene3D G3DSA:3.40.630.30 22 178 1.5E-31 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS20085 428707006335f3facac0791350f35820 178 SUPERFAMILY SSF55729 20 178 2.57E-29 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 Gene3D G3DSA:1.10.441.10 140 230 6.6E-25 T 14-09-2016 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 Gene3D G3DSA:1.10.441.10 273 286 6.6E-25 T 14-09-2016 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 254 279 - T 14-09-2016 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 125 133 - T 14-09-2016 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PANTHER PTHR10309 1 370 7.6E-135 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PIRSF PIRSF001480 1 391 5.6E-108 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 Gene3D G3DSA:2.60.120.10 287 372 7.9E-9 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PANTHER PTHR10309:SF0 1 370 7.6E-135 T 14-09-2016 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 Pfam PF01238 Phosphomannose isomerase type I 2 355 3.9E-103 T 14-09-2016 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 2 381 1.4E-119 T 14-09-2016 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 SUPERFAMILY SSF51182 2 373 2.7E-102 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 9.3E-72 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PRINTS PR00714 Phosphomannose isomerase type I signature 125 148 9.3E-72 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 9.3E-72 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PRINTS PR00714 Phosphomannose isomerase type I signature 219 234 9.3E-72 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PRINTS PR00714 Phosphomannose isomerase type I signature 273 292 9.3E-72 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PRINTS PR00714 Phosphomannose isomerase type I signature 254 273 9.3E-72 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PRINTS PR00714 Phosphomannose isomerase type I signature 80 101 9.3E-72 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 PRINTS PR00714 Phosphomannose isomerase type I signature 235 254 9.3E-72 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 Gene3D G3DSA:2.60.120.10 6 139 7.3E-66 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS06450 eb311f2844a2b57ff0f4c38ae6bf8175 391 Gene3D G3DSA:2.60.120.10 237 272 7.3E-66 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS03095 dbbf4ae89809b629721288fdec1b6deb 816 Gene3D G3DSA:2.30.30.60 650 698 2.6E-15 T 14-09-2016 PAJ_RS03095 dbbf4ae89809b629721288fdec1b6deb 816 PANTHER PTHR30347:SF3 229 816 1.1E-120 T 14-09-2016 PAJ_RS03095 dbbf4ae89809b629721288fdec1b6deb 816 Gene3D G3DSA:3.30.70.100 717 789 3.0E-11 T 14-09-2016 PAJ_RS03095 dbbf4ae89809b629721288fdec1b6deb 816 Pfam PF00924 Mechanosensitive ion channel 593 789 5.0E-41 T 14-09-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PAJ_RS03095 dbbf4ae89809b629721288fdec1b6deb 816 SUPERFAMILY SSF50182 635 699 4.25E-15 T 14-09-2016 IPR010920 LSM domain PAJ_RS03095 dbbf4ae89809b629721288fdec1b6deb 816 SUPERFAMILY SSF82861 550 633 1.44E-11 T 14-09-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 PAJ_RS03095 dbbf4ae89809b629721288fdec1b6deb 816 Pfam PF12607 Protein of unknown function (DUF3772) 142 203 2.4E-17 T 14-09-2016 IPR022249 Domain of unknown function DUF3772 PAJ_RS03095 dbbf4ae89809b629721288fdec1b6deb 816 PANTHER PTHR30347 229 816 1.1E-120 T 14-09-2016 PAJ_RS03095 dbbf4ae89809b629721288fdec1b6deb 816 SUPERFAMILY SSF82689 707 798 3.01E-13 T 14-09-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PAJ_RS20530 b0bf6161ef9371c38750a1190a1ab6b4 442 SUPERFAMILY SSF103473 11 438 3.01E-89 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20530 b0bf6161ef9371c38750a1190a1ab6b4 442 Pfam PF07690 Major Facilitator Superfamily 23 381 1.3E-55 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS20530 b0bf6161ef9371c38750a1190a1ab6b4 442 PIRSF PIRSF002808 4 440 7.9E-50 T 14-09-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS20530 b0bf6161ef9371c38750a1190a1ab6b4 442 Gene3D G3DSA:1.20.1250.20 13 207 8.0E-43 T 14-09-2016 PAJ_RS20530 b0bf6161ef9371c38750a1190a1ab6b4 442 PANTHER PTHR11662 15 438 1.2E-87 T 14-09-2016 PAJ_RS20530 b0bf6161ef9371c38750a1190a1ab6b4 442 Gene3D G3DSA:1.20.1250.20 252 438 6.5E-40 T 14-09-2016 PAJ_RS05300 68061d9c768a7297f5d94261d4e95f05 326 SUPERFAMILY SSF52283 2 136 1.28E-16 T 14-09-2016 PAJ_RS05300 68061d9c768a7297f5d94261d4e95f05 326 PANTHER PTHR10996:SF127 40 312 8.5E-90 T 14-09-2016 PAJ_RS05300 68061d9c768a7297f5d94261d4e95f05 326 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 42 312 1.5E-11 T 14-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PAJ_RS05300 68061d9c768a7297f5d94261d4e95f05 326 Gene3D G3DSA:3.40.50.720 122 286 2.4E-53 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05300 68061d9c768a7297f5d94261d4e95f05 326 PANTHER PTHR10996 40 312 8.5E-90 T 14-09-2016 PAJ_RS05300 68061d9c768a7297f5d94261d4e95f05 326 Gene3D G3DSA:3.40.50.720 5 121 4.9E-20 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05300 68061d9c768a7297f5d94261d4e95f05 326 SUPERFAMILY SSF51735 107 286 1.56E-49 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05300 68061d9c768a7297f5d94261d4e95f05 326 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 286 1.4E-49 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 PANTHER PTHR10229:SF0 1 426 3.0E-176 T 14-09-2016 PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 3.8E-10 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 3.8E-10 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 3.8E-10 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 PANTHER PTHR10229 1 426 3.0E-176 T 14-09-2016 IPR016496 GTPase HflX GO:0005525 PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 Pfam PF01926 50S ribosome-binding GTPase 200 318 1.5E-20 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 4.1E-153 T 14-09-2016 IPR016496 GTPase HflX GO:0005525 PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 Gene3D G3DSA:3.40.50.300 198 361 7.2E-33 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 7.1E-30 T 14-09-2016 IPR025121 GTPase HflX, N-terminal PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 Hamap MF_00900 GTPase HflX [hflX]. 27 390 45.806 T 14-09-2016 IPR016496 GTPase HflX GO:0005525 PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 SUPERFAMILY SSF52540 197 374 3.76E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 SUPERFAMILY SSF54980 365 422 1.01E-12 T 14-09-2016 IPR009022 Elongation factor G, III-V domain PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 PIRSF PIRSF006809 3 420 1.7E-146 T 14-09-2016 IPR016496 GTPase HflX GO:0005525 PAJ_RS15385 8fa893d3be69fe9ad867f7ddd017b6df 426 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 1.1E-28 T 14-09-2016 IPR032305 GTP-binding protein, middle domain PAJ_RS14175 f0ccbf7c2840427f74db94f70be221e3 259 SMART SM01133 10 246 3.9E-84 T 14-09-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 PAJ_RS14175 f0ccbf7c2840427f74db94f70be221e3 259 Gene3D G3DSA:3.20.20.70 3 253 1.2E-93 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS14175 f0ccbf7c2840427f74db94f70be221e3 259 PANTHER PTHR10889 5 257 1.6E-120 T 14-09-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 PAJ_RS14175 f0ccbf7c2840427f74db94f70be221e3 259 Pfam PF01791 DeoC/LacD family aldolase 11 243 3.9E-48 T 14-09-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 PAJ_RS14175 f0ccbf7c2840427f74db94f70be221e3 259 SUPERFAMILY SSF51569 6 247 1.15E-82 T 14-09-2016 PAJ_RS14175 f0ccbf7c2840427f74db94f70be221e3 259 PANTHER PTHR10889:SF3 5 257 1.6E-120 T 14-09-2016 PAJ_RS14175 f0ccbf7c2840427f74db94f70be221e3 259 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 232 2.6E-82 T 14-09-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 PAJ_RS14175 f0ccbf7c2840427f74db94f70be221e3 259 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 1 259 53.002 T 14-09-2016 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 PAJ_RS14175 f0ccbf7c2840427f74db94f70be221e3 259 PIRSF PIRSF001357 5 254 3.6E-78 T 14-09-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 PAJ_RS07775 2742654276ebf62e6b5920c07572d0bf 107 PIRSF PIRSF004916 1 107 2.1E-53 T 14-09-2016 IPR007376 dsDNA mimic, putative PAJ_RS07775 2742654276ebf62e6b5920c07572d0bf 107 Hamap MF_00680 UPF0263 protein YciU [yciU]. 3 107 33.252 T 14-09-2016 IPR007376 dsDNA mimic, putative PAJ_RS07775 2742654276ebf62e6b5920c07572d0bf 107 SUPERFAMILY SSF102816 1 107 7.19E-49 T 14-09-2016 IPR007376 dsDNA mimic, putative PAJ_RS07775 2742654276ebf62e6b5920c07572d0bf 107 Pfam PF04269 Protein of unknown function, DUF440 6 107 1.0E-44 T 14-09-2016 IPR007376 dsDNA mimic, putative PAJ_RS07775 2742654276ebf62e6b5920c07572d0bf 107 Gene3D G3DSA:3.10.450.140 7 107 1.3E-47 T 14-09-2016 IPR007376 dsDNA mimic, putative PAJ_RS07775 2742654276ebf62e6b5920c07572d0bf 107 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 5 107 8.0E-49 T 14-09-2016 IPR007376 dsDNA mimic, putative PAJ_RS08555 d6b5556fe757b04f2a9edd336715368c 228 PANTHER PTHR26402 1 216 6.5E-129 T 14-09-2016 PAJ_RS08555 d6b5556fe757b04f2a9edd336715368c 228 Gene3D G3DSA:1.10.10.10 124 218 1.5E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08555 d6b5556fe757b04f2a9edd336715368c 228 SMART SM00448 1 112 3.1E-37 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS08555 d6b5556fe757b04f2a9edd336715368c 228 Pfam PF00072 Response regulator receiver domain 3 113 4.4E-25 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS08555 d6b5556fe757b04f2a9edd336715368c 228 SUPERFAMILY SSF52172 1 134 2.28E-37 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS08555 d6b5556fe757b04f2a9edd336715368c 228 PANTHER PTHR26402:SF595 1 216 6.5E-129 T 14-09-2016 PAJ_RS08555 d6b5556fe757b04f2a9edd336715368c 228 SUPERFAMILY SSF46894 118 216 1.51E-25 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS08555 d6b5556fe757b04f2a9edd336715368c 228 SMART SM00862 145 216 3.0E-20 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS08555 d6b5556fe757b04f2a9edd336715368c 228 Gene3D G3DSA:3.40.50.2300 1 123 1.2E-34 T 14-09-2016 PAJ_RS08555 d6b5556fe757b04f2a9edd336715368c 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 216 1.2E-19 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS15920 e1f1b8744e8c8b33fa7e885d141fc446 278 SUPERFAMILY SSF54534 52 258 1.14E-66 T 14-09-2016 PAJ_RS15920 e1f1b8744e8c8b33fa7e885d141fc446 278 PANTHER PTHR10516 138 261 5.8E-53 T 14-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PAJ_RS15920 e1f1b8744e8c8b33fa7e885d141fc446 278 Gene3D G3DSA:3.10.50.40 144 258 9.2E-45 T 14-09-2016 PAJ_RS15920 e1f1b8744e8c8b33fa7e885d141fc446 278 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 41 161 4.7E-38 T 14-09-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 PAJ_RS15920 e1f1b8744e8c8b33fa7e885d141fc446 278 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 169 255 5.2E-28 T 14-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PAJ_RS15920 e1f1b8744e8c8b33fa7e885d141fc446 278 Gene3D G3DSA:1.10.287.460 43 143 4.1E-43 T 14-09-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Gene3D G3DSA:1.10.10.400 226 313 2.7E-25 T 14-09-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 3.2E-15 T 14-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Pfam PF03725 3' exoribonuclease family, domain 2 460 527 1.2E-5 T 14-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Gene3D G3DSA:3.30.1370.10 552 618 2.1E-25 T 14-09-2016 IPR004088 K Homology domain, type 1 GO:0003723 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Pfam PF01138 3' exoribonuclease family, domain 1 324 456 2.1E-21 T 14-09-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 3.2E-18 T 14-09-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 SUPERFAMILY SSF54211 293 488 3.14E-47 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 SMART SM00322 552 617 4.6E-12 T 14-09-2016 IPR004087 K Homology domain GO:0003676 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 SUPERFAMILY SSF55666 145 235 1.68E-30 T 14-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 SUPERFAMILY SSF54211 4 144 1.77E-49 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 PIRSF PIRSF005499 2 708 2.8E-299 T 14-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 SUPERFAMILY SSF50249 607 692 1.11E-22 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 SUPERFAMILY SSF46915 239 320 3.14E-19 T 14-09-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Gene3D G3DSA:2.40.50.140 619 694 4.8E-27 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Gene3D G3DSA:3.30.230.70 314 542 1.5E-89 T 14-09-2016 IPR027408 PNPase/RNase PH domain PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Gene3D G3DSA:3.30.230.70 4 225 2.8E-82 T 14-09-2016 IPR027408 PNPase/RNase PH domain PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 693 30.44 T 14-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Pfam PF00013 KH domain 556 613 1.1E-8 T 14-09-2016 IPR004088 K Homology domain, type 1 GO:0003723 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 691 0.0 T 14-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 SUPERFAMILY SSF55666 453 560 5.33E-28 T 14-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 320 1.6E-25 T 14-09-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 SMART SM00316 620 690 1.2E-26 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 PANTHER PTHR11252 2 691 0.0 T 14-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 Pfam PF00575 S1 RNA binding domain 619 690 8.8E-22 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS19925 9635e3abae5a07fcbd0842d4e73ea368 709 SUPERFAMILY SSF54791 554 622 2.96E-16 T 14-09-2016 IPR004088 K Homology domain, type 1 GO:0003723 PAJ_RS04910 84de3dfa1de04184d59d53bb1621e540 82 Pfam PF04226 Transglycosylase associated protein 33 81 7.6E-16 T 14-09-2016 IPR007341 Transglycosylase-associated protein GO:0016021 PAJ_RS04910 84de3dfa1de04184d59d53bb1621e540 82 PANTHER PTHR33884 1 82 1.5E-35 T 14-09-2016 PAJ_RS04910 84de3dfa1de04184d59d53bb1621e540 82 PANTHER PTHR33884:SF1 1 82 1.5E-35 T 14-09-2016 PAJ_RS18095 d0102b949485c6dfd3b8de160f9be50f 97 Gene3D G3DSA:1.10.260.40 40 89 1.3E-12 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS18095 d0102b949485c6dfd3b8de160f9be50f 97 Pfam PF01381 Helix-turn-helix 41 76 4.5E-6 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS18095 d0102b949485c6dfd3b8de160f9be50f 97 PANTHER PTHR36511 1 96 1.0E-31 T 14-09-2016 PAJ_RS18095 d0102b949485c6dfd3b8de160f9be50f 97 SUPERFAMILY SSF47413 41 88 7.04E-8 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS18095 d0102b949485c6dfd3b8de160f9be50f 97 PANTHER PTHR36511:SF1 1 96 1.0E-31 T 14-09-2016 PAJ_RS18235 d0edab3ee65aa9c8eb174fe8020b2b97 310 PANTHER PTHR10584:SF57 1 306 1.1E-157 T 14-09-2016 PAJ_RS18235 d0edab3ee65aa9c8eb174fe8020b2b97 310 PANTHER PTHR10584 1 306 1.1E-157 T 14-09-2016 PAJ_RS18235 d0edab3ee65aa9c8eb174fe8020b2b97 310 Gene3D G3DSA:3.40.1190.20 1 305 1.6E-73 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS18235 d0edab3ee65aa9c8eb174fe8020b2b97 310 SUPERFAMILY SSF53613 1 304 6.39E-72 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS18235 d0edab3ee65aa9c8eb174fe8020b2b97 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 259 272 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS18235 d0edab3ee65aa9c8eb174fe8020b2b97 310 Pfam PF00294 pfkB family carbohydrate kinase 4 306 9.6E-67 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 SUPERFAMILY SSF82714 182 271 3.01E-22 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PANTHER PTHR32063 1 1037 0.0 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1045 0.0 T 14-09-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 Gene3D G3DSA:3.30.70.1430 38 139 2.0E-34 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 SUPERFAMILY SSF82693 38 132 1.44E-25 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 Gene3D G3DSA:3.30.2090.10 723 811 1.7E-25 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 SUPERFAMILY SSF82693 135 182 3.31E-29 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 SUPERFAMILY SSF82693 274 330 3.31E-29 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 SUPERFAMILY SSF82693 810 858 1.73E-24 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 SUPERFAMILY SSF82693 673 723 1.73E-24 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 Gene3D G3DSA:3.30.2090.10 181 275 4.7E-26 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 SUPERFAMILY SSF82866 841 1029 6.67E-45 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 SUPERFAMILY SSF82866 296 497 9.02E-48 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 SUPERFAMILY SSF82693 566 670 1.26E-32 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 SUPERFAMILY SSF82714 724 811 2.62E-21 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 Gene3D G3DSA:3.30.70.1430 568 670 3.2E-39 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PANTHER PTHR32063:SF13 1 1037 0.0 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 Gene3D G3DSA:1.10.3850.10 278 498 7.5E-61 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 Gene3D G3DSA:1.10.3850.10 816 1030 3.0E-56 T 14-09-2016 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 8.0E-115 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 8.0E-115 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 8.0E-115 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 8.0E-115 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 8.0E-115 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 8.0E-115 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 8.0E-115 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 8.0E-115 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS01845 021a371fcd8e3dabde2a55a32462bacd 1049 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 8.0E-115 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS07100 a97b4c4ac210caa3bcb092e325537c78 622 Pfam PF02705 K+ potassium transporter 14 544 1.7E-199 T 14-09-2016 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 PAJ_RS07100 a97b4c4ac210caa3bcb092e325537c78 622 PANTHER PTHR30540:SF7 18 552 2.4E-220 T 14-09-2016 PAJ_RS07100 a97b4c4ac210caa3bcb092e325537c78 622 PANTHER PTHR30540 18 552 2.4E-220 T 14-09-2016 PAJ_RS07100 a97b4c4ac210caa3bcb092e325537c78 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 31.763 T 14-09-2016 IPR023051 Potassium uptake protein, low affinity, Kup PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 Gene3D G3DSA:3.30.420.10 167 383 3.5E-34 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 SUPERFAMILY SSF53098 23 408 1.1E-90 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 SMART SM00486 167 574 1.2E-71 T 14-09-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 434 447 7.5E-10 T 14-09-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 508 520 7.5E-10 T 14-09-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 560 568 7.5E-10 T 14-09-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 Gene3D G3DSA:3.90.1600.10 419 450 2.2E-10 T 14-09-2016 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 Gene3D G3DSA:3.90.1600.10 531 596 2.2E-10 T 14-09-2016 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 Pfam PF00136 DNA polymerase family B 399 760 1.7E-40 T 14-09-2016 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 Pfam PF03104 DNA polymerase family B, exonuclease domain 94 269 4.5E-9 T 14-09-2016 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 SUPERFAMILY SSF56672 404 797 1.5E-112 T 14-09-2016 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 ProSitePatterns PS00116 DNA polymerase family B signature. 562 570 - T 14-09-2016 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00180 059d86f2b9b240bfd41920607b875c88 803 PANTHER PTHR10322 89 803 2.7E-207 T 14-09-2016 PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 SMART SM00079 22 243 5.6E-7 T 14-09-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 Gene3D G3DSA:3.40.190.10 203 242 2.7E-45 T 14-09-2016 PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 Gene3D G3DSA:3.40.190.10 20 108 2.7E-45 T 14-09-2016 PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 SMART SM00062 22 243 2.1E-80 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 PANTHER PTHR18966:SF194 23 241 6.8E-101 T 14-09-2016 PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 PANTHER PTHR18966 23 241 6.8E-101 T 14-09-2016 PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 5 241 3.0E-84 T 14-09-2016 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 SUPERFAMILY SSF53850 1 242 1.23E-74 T 14-09-2016 PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 2.5E-70 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS03470 1d61163bd132e1c2987cd7e5089a3b45 243 Gene3D G3DSA:3.40.190.10 109 201 8.2E-28 T 14-09-2016 PAJ_RS20780 779fbaf5ba8049f42e55dd21ad9ed82f 840 PANTHER PTHR30451:SF7 7 542 1.7E-299 T 14-09-2016 PAJ_RS20780 779fbaf5ba8049f42e55dd21ad9ed82f 840 PANTHER PTHR30451:SF7 559 840 1.7E-299 T 14-09-2016 PAJ_RS20780 779fbaf5ba8049f42e55dd21ad9ed82f 840 SUPERFAMILY SSF141729 55 158 4.97E-19 T 14-09-2016 PAJ_RS20780 779fbaf5ba8049f42e55dd21ad9ed82f 840 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 296 306 - T 14-09-2016 IPR018030 Fimbrial membrane usher, conserved site PAJ_RS20780 779fbaf5ba8049f42e55dd21ad9ed82f 840 PANTHER PTHR30451 7 542 1.7E-299 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20780 779fbaf5ba8049f42e55dd21ad9ed82f 840 PANTHER PTHR30451 559 840 1.7E-299 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20780 779fbaf5ba8049f42e55dd21ad9ed82f 840 Pfam PF13954 PapC N-terminal domain 30 169 2.7E-29 T 14-09-2016 IPR025885 PapC, N-terminal domain GO:0005515 PAJ_RS20780 779fbaf5ba8049f42e55dd21ad9ed82f 840 Pfam PF00577 Outer membrane usher protein 185 750 1.4E-146 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20780 779fbaf5ba8049f42e55dd21ad9ed82f 840 Pfam PF13953 PapC C-terminal domain 760 824 1.5E-15 T 14-09-2016 IPR025949 PapC-like, C-terminal domain PAJ_RS18230 9107471114de28de2b2dfd5c81a3f83c 147 PANTHER PTHR36503:SF1 1 144 1.0E-58 T 14-09-2016 PAJ_RS18230 9107471114de28de2b2dfd5c81a3f83c 147 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 127 1.6E-13 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PAJ_RS18230 9107471114de28de2b2dfd5c81a3f83c 147 SUPERFAMILY SSF54593 2 135 4.16E-28 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS18230 9107471114de28de2b2dfd5c81a3f83c 147 Gene3D G3DSA:3.10.180.10 1 137 2.4E-40 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS18230 9107471114de28de2b2dfd5c81a3f83c 147 PANTHER PTHR36503 1 144 1.0E-58 T 14-09-2016 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 SMART SM00962 383 584 5.4E-124 T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 SUPERFAMILY SSF47364 284 362 1.26E-21 T 14-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 SMART SM00963 289 369 8.7E-25 T 14-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 PANTHER PTHR11564:SF16 279 587 6.1E-153 T 14-09-2016 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 SMART SM00382 382 529 3.8E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 Gene3D G3DSA:3.40.50.300 377 583 1.7E-82 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 312 583 1.1E-114 T 14-09-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 Pfam PF02881 SRP54-type protein, helical bundle domain 300 365 5.2E-12 T 14-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 Gene3D G3DSA:1.20.120.140 275 365 1.3E-34 T 14-09-2016 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 SUPERFAMILY SSF52540 376 583 6.39E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 PANTHER PTHR11564 279 587 6.1E-153 T 14-09-2016 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 312 584 64.849 T 14-09-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 Pfam PF00448 SRP54-type protein, GTPase domain 383 583 2.2E-78 T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS16370 42fec64183dabaaaa7e3abde5e0dc0e8 587 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 557 570 - T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 Pfam PF00206 Lyase 6 301 3.1E-96 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PANTHER PTHR11444 3 456 1.1E-237 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 Gene3D G3DSA:1.10.40.30 375 432 5.1E-29 T 14-09-2016 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 Gene3D G3DSA:1.10.275.10 1 107 3.8E-37 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 40.811 T 14-09-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 1.6E-208 T 14-09-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PANTHER PTHR11444:SF3 3 456 1.1E-237 T 14-09-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 SUPERFAMILY SSF48557 3 456 4.4E-141 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 Gene3D G3DSA:1.20.200.10 108 374 1.1E-101 T 14-09-2016 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 14-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 1.4E-22 T 14-09-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 6.2E-28 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 6.2E-28 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 6.2E-28 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 6.2E-28 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 8.0E-68 T 14-09-2016 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 8.0E-68 T 14-09-2016 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 8.0E-68 T 14-09-2016 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 8.0E-68 T 14-09-2016 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 8.0E-68 T 14-09-2016 PAJ_RS16985 7160ffe3a3089719d242cf29136445cc 457 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 8.0E-68 T 14-09-2016 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 SUPERFAMILY SSF55271 6 120 1.44E-43 T 14-09-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 SMART SM00534 609 796 1.0E-120 T 14-09-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 SMART SM00533 288 593 1.3E-106 T 14-09-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 Pfam PF01624 MutS domain I 13 124 2.4E-42 T 14-09-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 SUPERFAMILY SSF52540 569 799 1.65E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 Gene3D G3DSA:3.40.1170.10 7 125 1.6E-51 T 14-09-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 12 845 25.537 T 14-09-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 Gene3D G3DSA:1.10.1420.10 269 470 1.5E-53 T 14-09-2016 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 SUPERFAMILY SSF48334 272 568 1.83E-90 T 14-09-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 Pfam PF05190 MutS family domain IV 430 519 1.6E-29 T 14-09-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 Gene3D G3DSA:3.30.420.110 131 260 4.7E-44 T 14-09-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 PANTHER PTHR11361:SF86 7 852 0.0 T 14-09-2016 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 690 706 - T 14-09-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 Gene3D G3DSA:3.40.50.300 569 799 1.2E-82 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 PIRSF PIRSF037677 5 830 1.2E-155 T 14-09-2016 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 PANTHER PTHR11361 7 852 0.0 T 14-09-2016 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 SUPERFAMILY SSF53150 119 271 4.71E-43 T 14-09-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 12 850 0.0 T 14-09-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 Pfam PF00488 MutS domain V 612 799 2.6E-87 T 14-09-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 Pfam PF05192 MutS domain III 274 561 2.2E-40 T 14-09-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 PAJ_RS12800 8c098d907d90ca07b623399de140e47f 853 Pfam PF05188 MutS domain II 133 258 4.6E-33 T 14-09-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:2.40.50.150 1045 1059 2.4E-57 T 14-09-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:2.40.50.150 828 937 2.4E-57 T 14-09-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 PANTHER PTHR20856 1034 1128 0.0 T 14-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 PANTHER PTHR20856 1182 1342 0.0 T 14-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:2.40.270.10 793 820 8.9E-90 T 14-09-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:2.40.270.10 1060 1242 8.9E-90 T 14-09-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 14-09-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.307 T 14-09-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 14-09-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:2.40.50.100 715 792 7.2E-31 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 1.9E-27 T 14-09-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 PANTHER PTHR20856:SF20 5 231 0.0 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 PANTHER PTHR20856:SF20 1034 1128 0.0 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 PANTHER PTHR20856:SF20 1182 1342 0.0 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 PANTHER PTHR20856:SF20 743 930 0.0 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:3.90.1100.10 20 151 4.7E-147 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:3.90.1100.10 659 713 4.7E-147 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:3.90.1100.10 445 591 4.7E-147 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:3.90.1110.10 346 444 8.1E-65 T 14-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:3.90.1110.10 153 230 8.1E-65 T 14-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 244 3.3E-6 T 14-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 340 454 2.4E-16 T 14-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Gene3D G3DSA:2.30.150.10 592 656 7.7E-30 T 14-09-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 PANTHER PTHR20856 5 231 0.0 T 14-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 PANTHER PTHR20856 743 930 0.0 T 14-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 1.9E-57 T 14-09-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 9.4E-26 T 14-09-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 2.0E-30 T 14-09-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 1.2E-160 T 14-09-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 SUPERFAMILY SSF64484 343 939 0.0 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 SUPERFAMILY SSF64484 11 226 0.0 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 SUPERFAMILY SSF64484 1039 1341 0.0 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 PANTHER PTHR20856:SF20 340 725 0.0 T 14-09-2016 PAJ_RS18685 b2814bc0a0f0f2c93eeae4b1fcd2bf4f 1342 PANTHER PTHR20856 340 725 0.0 T 14-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS00230 68ec87d2f70e331238479c655035980a 404 Gene3D G3DSA:1.20.1250.20 8 188 6.4E-18 T 14-09-2016 PAJ_RS00230 68ec87d2f70e331238479c655035980a 404 Pfam PF07690 Major Facilitator Superfamily 13 295 2.2E-19 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS00230 68ec87d2f70e331238479c655035980a 404 Gene3D G3DSA:1.20.1250.20 202 395 1.7E-11 T 14-09-2016 PAJ_RS00230 68ec87d2f70e331238479c655035980a 404 SUPERFAMILY SSF103473 9 390 2.49E-38 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS00230 68ec87d2f70e331238479c655035980a 404 PANTHER PTHR23514:SF1 2 387 8.3E-163 T 14-09-2016 PAJ_RS00230 68ec87d2f70e331238479c655035980a 404 ProSitePatterns PS00216 Sugar transport proteins signature 1. 61 77 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS00230 68ec87d2f70e331238479c655035980a 404 PANTHER PTHR23514 2 387 8.3E-163 T 14-09-2016 PAJ_RS16410 57678296cf67c34fa1597116e75fe6a9 184 Pfam PF08786 Domain of unknown function (DUF1795) 50 180 7.1E-32 T 14-09-2016 IPR014894 Protein DcrB PAJ_RS16410 57678296cf67c34fa1597116e75fe6a9 184 SUPERFAMILY SSF55724 67 183 6.8E-5 T 14-09-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich PAJ_RS16410 57678296cf67c34fa1597116e75fe6a9 184 Gene3D G3DSA:3.40.1000.10 51 183 3.4E-8 T 14-09-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich PAJ_RS08020 08f398f96d481bde513082873aea53b7 91 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 82 2.0E-31 T 14-09-2016 IPR027354 YcgL domain PAJ_RS08020 08f398f96d481bde513082873aea53b7 91 SUPERFAMILY SSF160191 1 87 5.75E-37 T 14-09-2016 PAJ_RS08020 08f398f96d481bde513082873aea53b7 91 Pfam PF05166 YcgL domain 3 75 7.6E-32 T 14-09-2016 IPR027354 YcgL domain PAJ_RS08020 08f398f96d481bde513082873aea53b7 91 Hamap MF_01866 Protein YcgL [ycgL]. 1 88 26.272 T 14-09-2016 IPR027354 YcgL domain PAJ_RS08020 08f398f96d481bde513082873aea53b7 91 PANTHER PTHR38109 2 86 7.3E-37 T 14-09-2016 PAJ_RS18175 87a645d9af6c016c229592f1fa9c0b4c 267 Pfam PF06564 Cellulose biosynthesis protein BcsQ 1 244 2.2E-40 T 14-09-2016 IPR017746 Cellulose synthase operon protein BcsQ PAJ_RS18175 87a645d9af6c016c229592f1fa9c0b4c 267 SUPERFAMILY SSF52540 2 248 5.12E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18175 87a645d9af6c016c229592f1fa9c0b4c 267 TIGRFAM TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ 1 247 6.2E-57 T 14-09-2016 IPR017746 Cellulose synthase operon protein BcsQ PAJ_RS18175 87a645d9af6c016c229592f1fa9c0b4c 267 Gene3D G3DSA:3.40.50.300 2 249 2.4E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18175 87a645d9af6c016c229592f1fa9c0b4c 267 PANTHER PTHR13696 1 257 4.0E-29 T 14-09-2016 PAJ_RS18035 e61f0d90874699ffb592108bc2ec5886 203 Gene3D G3DSA:1.20.1050.10 88 200 2.5E-13 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS18035 e61f0d90874699ffb592108bc2ec5886 203 PANTHER PTHR11260 1 201 1.1E-79 T 14-09-2016 PAJ_RS18035 e61f0d90874699ffb592108bc2ec5886 203 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 77 8.3E-18 T 14-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PAJ_RS18035 e61f0d90874699ffb592108bc2ec5886 203 SUPERFAMILY SSF52833 1 99 2.24E-18 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS18035 e61f0d90874699ffb592108bc2ec5886 203 SUPERFAMILY SSF47616 69 201 7.39E-17 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS18035 e61f0d90874699ffb592108bc2ec5886 203 Gene3D G3DSA:3.40.30.10 1 87 2.7E-20 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS18035 e61f0d90874699ffb592108bc2ec5886 203 Pfam PF00043 Glutathione S-transferase, C-terminal domain 100 193 7.1E-6 T 14-09-2016 IPR004046 Glutathione S-transferase, C-terminal PAJ_RS18035 e61f0d90874699ffb592108bc2ec5886 203 PANTHER PTHR11260:SF256 1 201 1.1E-79 T 14-09-2016 PAJ_RS15395 fc1eb5bf2aebd54c01f412be82f81788 316 PANTHER PTHR11088 1 302 1.3E-122 T 14-09-2016 PAJ_RS15395 fc1eb5bf2aebd54c01f412be82f81788 316 Gene3D G3DSA:1.10.287.890 207 289 4.6E-33 T 14-09-2016 PAJ_RS15395 fc1eb5bf2aebd54c01f412be82f81788 316 Gene3D G3DSA:3.40.50.300 10 178 6.4E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15395 fc1eb5bf2aebd54c01f412be82f81788 316 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 12 312 29.769 T 14-09-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 PAJ_RS15395 fc1eb5bf2aebd54c01f412be82f81788 316 SUPERFAMILY SSF52540 13 155 1.08E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15395 fc1eb5bf2aebd54c01f412be82f81788 316 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 300 2.1E-118 T 14-09-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 PAJ_RS15395 fc1eb5bf2aebd54c01f412be82f81788 316 Pfam PF01715 IPP transferase 46 292 3.6E-84 T 14-09-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 PAJ_RS16425 6298667a342a33c2a6bf416462649890 336 SUPERFAMILY SSF55347 132 291 8.11E-17 T 14-09-2016 PAJ_RS16425 6298667a342a33c2a6bf416462649890 336 Gene3D G3DSA:3.40.50.720 2 151 1.1E-40 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16425 6298667a342a33c2a6bf416462649890 336 SUPERFAMILY SSF51735 3 154 6.04E-42 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16425 6298667a342a33c2a6bf416462649890 336 Gene3D G3DSA:3.30.360.10 152 263 1.7E-41 T 14-09-2016 PAJ_RS16425 6298667a342a33c2a6bf416462649890 336 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 125 5.9E-26 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 PAJ_RS16425 6298667a342a33c2a6bf416462649890 336 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 239 1.1E-8 T 14-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 PAJ_RS16425 6298667a342a33c2a6bf416462649890 336 PANTHER PTHR22604:SF103 3 336 3.4E-160 T 14-09-2016 PAJ_RS16425 6298667a342a33c2a6bf416462649890 336 PANTHER PTHR22604 3 336 3.4E-160 T 14-09-2016 PAJ_RS16425 6298667a342a33c2a6bf416462649890 336 Hamap MF_01671 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase [iolG]. 1 336 51.002 T 14-09-2016 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase GO:0019310|GO:0050112|GO:0055114 KEGG: 00521+1.1.1.18|KEGG: 00562+1.1.1.18|MetaCyc: PWY-5940|MetaCyc: PWY-7237|MetaCyc: PWY-7241 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 SMART SM00977 356 427 8.4E-20 T 14-09-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 14 195 6.7E-53 T 14-09-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 SUPERFAMILY SSF82829 226 310 2.09E-23 T 14-09-2016 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 PANTHER PTHR11807 7 435 4.8E-90 T 14-09-2016 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 SUPERFAMILY SSF56037 320 429 1.99E-27 T 14-09-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 Pfam PF01171 PP-loop family 14 191 1.3E-59 T 14-09-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 Pfam PF11734 TilS substrate C-terminal domain 358 427 1.5E-22 T 14-09-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 4 302 23.005 T 14-09-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 PANTHER PTHR11807:SF2 7 435 4.8E-90 T 14-09-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 SUPERFAMILY SSF52402 7 225 5.73E-62 T 14-09-2016 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 358 401 1.7E-11 T 14-09-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 Pfam PF09179 TilS substrate binding domain 241 307 6.1E-18 T 14-09-2016 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PAJ_RS00785 d80e540fd4028c687c5d6108a60b155a 435 Gene3D G3DSA:3.40.50.620 9 178 1.8E-8 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS12570 8b091b0e286f9c4c21c3ebbb7b711f3b 139 TIGRFAM TIGR01068 thioredoxin: thioredoxin 44 138 2.7E-34 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PAJ_RS12570 8b091b0e286f9c4c21c3ebbb7b711f3b 139 SUPERFAMILY SSF52833 24 138 1.55E-37 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS12570 8b091b0e286f9c4c21c3ebbb7b711f3b 139 PANTHER PTHR10438:SF266 25 139 2.7E-58 T 14-09-2016 PAJ_RS12570 8b091b0e286f9c4c21c3ebbb7b711f3b 139 ProSitePatterns PS00194 Thioredoxin family active site. 56 74 - T 14-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PAJ_RS12570 8b091b0e286f9c4c21c3ebbb7b711f3b 139 PANTHER PTHR10438 25 139 2.7E-58 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PAJ_RS12570 8b091b0e286f9c4c21c3ebbb7b711f3b 139 PRINTS PR00421 Thioredoxin family signature 103 114 4.2E-8 T 14-09-2016 PAJ_RS12570 8b091b0e286f9c4c21c3ebbb7b711f3b 139 PRINTS PR00421 Thioredoxin family signature 63 72 4.2E-8 T 14-09-2016 PAJ_RS12570 8b091b0e286f9c4c21c3ebbb7b711f3b 139 PRINTS PR00421 Thioredoxin family signature 55 63 4.2E-8 T 14-09-2016 PAJ_RS12570 8b091b0e286f9c4c21c3ebbb7b711f3b 139 Gene3D G3DSA:3.40.30.10 30 138 1.6E-34 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS12570 8b091b0e286f9c4c21c3ebbb7b711f3b 139 Pfam PF00085 Thioredoxin 37 137 1.0E-26 T 14-09-2016 IPR013766 Thioredoxin domain GO:0045454 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 323 1.7E-51 T 14-09-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 7 163 1.6E-50 T 14-09-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 SUPERFAMILY SSF51735 8 182 2.96E-50 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 Gene3D G3DSA:1.10.1040.10 184 330 9.5E-57 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 Gene3D G3DSA:3.40.50.720 8 182 2.9E-54 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 PANTHER PTHR11728 8 339 1.2E-143 T 14-09-2016 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 PIRSF PIRSF000114 1 336 1.0E-97 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 7.0E-44 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 7.0E-44 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 7.0E-44 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 7.0E-44 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 7.0E-44 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 7.0E-44 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 SUPERFAMILY SSF48179 184 335 2.72E-55 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS17170 a8682ce82d279b29b1f2a8f69f6f3df5 339 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 326 37.299 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PAJ_RS04145 8a8e31368b38ab3b85d023e42300b822 282 Pfam PF00574 Clp protease 72 204 7.6E-26 T 14-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PAJ_RS04145 8a8e31368b38ab3b85d023e42300b822 282 PRINTS PR00127 Clp protease catalytic subunit P signature 182 201 8.3E-11 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PAJ_RS04145 8a8e31368b38ab3b85d023e42300b822 282 PRINTS PR00127 Clp protease catalytic subunit P signature 75 95 8.3E-11 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PAJ_RS04145 8a8e31368b38ab3b85d023e42300b822 282 PRINTS PR00127 Clp protease catalytic subunit P signature 106 123 8.3E-11 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PAJ_RS04145 8a8e31368b38ab3b85d023e42300b822 282 SUPERFAMILY SSF52096 36 208 8.29E-42 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS04145 8a8e31368b38ab3b85d023e42300b822 282 Gene3D G3DSA:3.90.226.10 67 208 3.9E-38 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS04145 8a8e31368b38ab3b85d023e42300b822 282 PANTHER PTHR10381 40 209 1.6E-50 T 14-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PAJ_RS04145 8a8e31368b38ab3b85d023e42300b822 282 PANTHER PTHR10381:SF23 40 209 1.6E-50 T 14-09-2016 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 SUPERFAMILY SSF52343 445 600 2.75E-50 T 14-09-2016 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00369 Flavodoxin signature 144 154 5.7E-15 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00369 Flavodoxin signature 112 123 5.7E-15 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00369 Flavodoxin signature 64 77 5.7E-15 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00369 Flavodoxin signature 168 187 5.7E-15 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 Gene3D G3DSA:3.40.50.80 456 599 9.4E-58 T 14-09-2016 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 SUPERFAMILY SSF63380 228 447 8.88E-65 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PANTHER PTHR19384:SF76 56 600 3.7E-217 T 14-09-2016 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 Gene3D G3DSA:3.40.50.360 56 209 1.5E-45 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 Gene3D G3DSA:1.20.990.10 282 384 7.7E-39 T 14-09-2016 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 482 491 2.3E-29 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 495 506 2.3E-29 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 549 557 2.3E-29 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 387 394 2.3E-29 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 271 281 2.3E-29 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 420 429 2.3E-29 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 457 476 2.3E-29 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 526 542 2.3E-29 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 Pfam PF00175 Oxidoreductase NAD-binding domain 458 564 7.1E-20 T 14-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PANTHER PTHR19384 56 600 3.7E-217 T 14-09-2016 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 1 600 51.775 T 14-09-2016 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 9 600 6.4E-273 T 14-09-2016 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 Pfam PF00258 Flavodoxin 66 193 5.7E-30 T 14-09-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 Pfam PF00667 FAD binding domain 231 425 9.6E-27 T 14-09-2016 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 SUPERFAMILY SSF52218 62 209 2.72E-41 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 PIRSF PIRSF000207 1 600 3.3E-275 T 14-09-2016 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 Gene3D G3DSA:2.40.30.10 385 455 3.2E-40 T 14-09-2016 PAJ_RS12935 b0b92d820068e5f488d12eec9bbf4cf3 600 Gene3D G3DSA:2.40.30.10 230 281 3.2E-40 T 14-09-2016 PAJ_RS09725 a94e87f88d7a476b9c8d25a8f059ef02 451 Pfam PF02447 GntP family permease 7 447 5.9E-132 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PAJ_RS09725 a94e87f88d7a476b9c8d25a8f059ef02 451 PANTHER PTHR30354:SF2 1 451 4.4E-194 T 14-09-2016 PAJ_RS09725 a94e87f88d7a476b9c8d25a8f059ef02 451 PIRSF PIRSF002746 1 451 3.8E-143 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PAJ_RS09725 a94e87f88d7a476b9c8d25a8f059ef02 451 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 7 451 2.6E-101 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PAJ_RS09725 a94e87f88d7a476b9c8d25a8f059ef02 451 PANTHER PTHR30354 1 451 4.4E-194 T 14-09-2016 PAJ_RS08775 e6b7ab771e174bae92621c2d44f64089 367 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 190 323 4.7E-22 T 14-09-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PAJ_RS08775 e6b7ab771e174bae92621c2d44f64089 367 SUPERFAMILY SSF53335 6 364 9.98E-62 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08775 e6b7ab771e174bae92621c2d44f64089 367 Gene3D G3DSA:3.40.50.150 173 364 4.4E-53 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08775 e6b7ab771e174bae92621c2d44f64089 367 Pfam PF05050 Methyltransferase FkbM domain 192 320 1.0E-13 T 14-09-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PAJ_RS02905 563e956042a6a64c810892192078c060 490 Pfam PF00005 ABC transporter 277 429 5.6E-25 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS02905 563e956042a6a64c810892192078c060 490 Pfam PF00005 ABC transporter 23 163 7.1E-24 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS02905 563e956042a6a64c810892192078c060 490 PANTHER PTHR24220:SF557 5 384 5.2E-170 T 14-09-2016 PAJ_RS02905 563e956042a6a64c810892192078c060 490 Gene3D G3DSA:3.40.50.300 257 468 1.3E-37 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02905 563e956042a6a64c810892192078c060 490 Gene3D G3DSA:3.40.50.300 11 227 4.6E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02905 563e956042a6a64c810892192078c060 490 SUPERFAMILY SSF52540 8 226 1.1E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02905 563e956042a6a64c810892192078c060 490 SMART SM00382 28 219 1.2E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS02905 563e956042a6a64c810892192078c060 490 SMART SM00382 285 479 2.4E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS02905 563e956042a6a64c810892192078c060 490 PANTHER PTHR24220 5 384 5.2E-170 T 14-09-2016 PAJ_RS02905 563e956042a6a64c810892192078c060 490 SUPERFAMILY SSF52540 259 473 7.26E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 SUPERFAMILY SSF47323 662 859 1.79E-35 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 SUPERFAMILY SSF52374 416 668 2.82E-142 T 14-09-2016 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 SUPERFAMILY SSF52374 5 226 2.82E-142 T 14-09-2016 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PANTHER PTHR11946:SF7 615 859 0.0 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Gene3D G3DSA:1.10.730.10 648 795 2.0E-42 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PANTHER PTHR11946 240 571 0.0 T 14-09-2016 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 572 5.6E-6 T 14-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 171 1.1E-27 T 14-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 651 9.3E-7 T 14-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PANTHER PTHR11946 1 206 0.0 T 14-09-2016 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Gene3D G3DSA:3.90.740.10 223 424 1.8E-56 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 8.3E-76 T 14-09-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 7.1E-53 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 7.1E-53 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 7.1E-53 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 7.1E-53 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 7.1E-53 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 7.1E-53 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 7.1E-53 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PANTHER PTHR11946 615 859 0.0 T 14-09-2016 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 SUPERFAMILY SSF50677 226 415 8.48E-54 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 859 0.0 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 859 23.315 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PANTHER PTHR11946:SF7 240 571 0.0 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 PANTHER PTHR11946:SF7 1 206 0.0 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Pfam PF08264 Anticodon-binding domain of tRNA 702 821 3.6E-15 T 14-09-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Gene3D G3DSA:3.40.50.620 618 647 3.2E-152 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Gene3D G3DSA:3.40.50.620 4 222 3.2E-152 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 Gene3D G3DSA:3.40.50.620 425 573 3.2E-152 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS02475 2427c8ed3b93f5face4e8bf49d84c078 860 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS17180 3eea20a1b1a42b37a6587d5043176d19 84 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 14-09-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 PAJ_RS17180 3eea20a1b1a42b37a6587d5043176d19 84 Gene3D G3DSA:3.40.30.10 1 72 1.7E-31 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS17180 3eea20a1b1a42b37a6587d5043176d19 84 PRINTS PR00160 Glutaredoxin signature 4 22 1.8E-18 T 14-09-2016 IPR014025 Glutaredoxin subgroup PAJ_RS17180 3eea20a1b1a42b37a6587d5043176d19 84 PRINTS PR00160 Glutaredoxin signature 46 59 1.8E-18 T 14-09-2016 IPR014025 Glutaredoxin subgroup PAJ_RS17180 3eea20a1b1a42b37a6587d5043176d19 84 PRINTS PR00160 Glutaredoxin signature 60 73 1.8E-18 T 14-09-2016 IPR014025 Glutaredoxin subgroup PAJ_RS17180 3eea20a1b1a42b37a6587d5043176d19 84 Pfam PF00462 Glutaredoxin 4 63 1.1E-25 T 14-09-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 PAJ_RS17180 3eea20a1b1a42b37a6587d5043176d19 84 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 6.5E-36 T 14-09-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 PAJ_RS17180 3eea20a1b1a42b37a6587d5043176d19 84 SUPERFAMILY SSF52833 1 83 6.23E-30 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS17180 3eea20a1b1a42b37a6587d5043176d19 84 PANTHER PTHR10168 4 84 8.5E-33 T 14-09-2016 PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 Pfam PF04715 Anthranilate synthase component I, N terminal region 17 151 1.2E-27 T 14-09-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 PANTHER PTHR11236 26 450 1.9E-159 T 14-09-2016 PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 SUPERFAMILY SSF56322 5 449 2.09E-144 T 14-09-2016 IPR005801 ADC synthase GO:0009058 PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 PRINTS PR00095 Anthranilate synthase component I signature 302 315 2.3E-17 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 PRINTS PR00095 Anthranilate synthase component I signature 288 301 2.3E-17 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 PRINTS PR00095 Anthranilate synthase component I signature 397 411 2.3E-17 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 PRINTS PR00095 Anthranilate synthase component I signature 382 396 2.3E-17 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 104 443 1.1E-127 T 14-09-2016 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543|UniPathway: UPA00077 PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 Pfam PF00425 chorismate binding enzyme 188 440 2.0E-91 T 14-09-2016 IPR015890 Chorismate-utilising enzyme, C-terminal PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 PANTHER PTHR11236:SF18 26 450 1.9E-159 T 14-09-2016 PAJ_RS08075 b7d63457f9706f52728088bc68936cad 452 Gene3D G3DSA:3.60.120.10 5 449 4.1E-150 T 14-09-2016 IPR005801 ADC synthase GO:0009058 PAJ_RS15390 c07f216611d42e6c66222492b62809a0 104 Gene3D G3DSA:2.30.30.100 1 74 4.8E-38 T 14-09-2016 PAJ_RS15390 c07f216611d42e6c66222492b62809a0 104 PANTHER PTHR34772 1 94 2.9E-44 T 14-09-2016 PAJ_RS15390 c07f216611d42e6c66222492b62809a0 104 PANTHER PTHR34772:SF1 1 94 2.9E-44 T 14-09-2016 PAJ_RS15390 c07f216611d42e6c66222492b62809a0 104 SUPERFAMILY SSF50182 7 69 4.24E-24 T 14-09-2016 IPR010920 LSM domain PAJ_RS15390 c07f216611d42e6c66222492b62809a0 104 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.396 T 14-09-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 PAJ_RS15390 c07f216611d42e6c66222492b62809a0 104 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.1E-29 T 14-09-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 PAJ_RS15320 249e384e262604098d36022b0d452bbb 105 SUPERFAMILY SSF50249 2 104 5.48E-30 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15320 249e384e262604098d36022b0d452bbb 105 PIRSF PIRSF003135 1 102 4.2E-45 T 14-09-2016 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 PAJ_RS15320 249e384e262604098d36022b0d452bbb 105 Pfam PF00436 Single-strand binding protein family 3 94 1.2E-13 T 14-09-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 PAJ_RS15320 249e384e262604098d36022b0d452bbb 105 Gene3D G3DSA:2.40.50.140 2 104 5.1E-40 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15320 249e384e262604098d36022b0d452bbb 105 Hamap MF_00720 Primosomal replication protein n [priB]. 2 101 28.282 T 14-09-2016 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 PAJ_RS15320 249e384e262604098d36022b0d452bbb 105 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 4 100 4.6E-35 T 14-09-2016 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 SUPERFAMILY SSF53067 258 500 1.06E-85 T 14-09-2016 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 Hamap MF_00186 Glycerol kinase [glpK]. 6 500 59.359 T 14-09-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 PANTHER PTHR10196 1 503 1.6E-266 T 14-09-2016 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 PANTHER PTHR10196:SF9 1 503 1.6E-266 T 14-09-2016 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 Gene3D G3DSA:3.30.420.40 5 256 4.6E-106 T 14-09-2016 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 365 385 - T 14-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 138 150 - T 14-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 PIRSF PIRSF000538 6 503 1.4E-179 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 264 453 8.4E-62 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 7 499 2.1E-229 T 14-09-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 Gene3D G3DSA:3.30.420.40 258 501 3.1E-104 T 14-09-2016 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 SUPERFAMILY SSF53067 7 258 3.99E-96 T 14-09-2016 PAJ_RS17085 f475a72c9638f29fbbeb19f49d32d80a 503 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 8 255 1.0E-89 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 2.7E-81 T 14-09-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 Pfam PF14824 Sirohaem biosynthesis protein central 119 144 2.5E-7 T 14-09-2016 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 PIRSF PIRSF036426 1 465 6.5E-207 T 14-09-2016 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 SUPERFAMILY SSF53790 212 456 1.31E-78 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 Gene3D G3DSA:3.30.950.10 331 463 5.1E-50 T 14-09-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 3.4E-21 T 14-09-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 215 448 2.2E-90 T 14-09-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 Gene3D G3DSA:3.40.50.720 2 112 2.1E-39 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 PANTHER PTHR21091 164 426 2.4E-81 T 14-09-2016 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 Gene3D G3DSA:1.10.8.210 150 209 1.0E-23 T 14-09-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 Gene3D G3DSA:3.30.160.110 113 148 5.8E-20 T 14-09-2016 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 295 328 - T 14-09-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 217 426 4.8E-49 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 Pfam PF13241 Putative NAD(P)-binding 6 115 1.3E-29 T 14-09-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 PANTHER PTHR21091:SF16 164 426 2.4E-81 T 14-09-2016 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 Gene3D G3DSA:3.40.1010.10 214 330 5.9E-47 T 14-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 52.796 T 14-09-2016 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 SUPERFAMILY SSF51735 2 113 2.63E-27 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 220 234 - T 14-09-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS12875 ad5e9723ed4b14f126ed3469dce75910 471 SUPERFAMILY SSF75615 114 210 1.1E-28 T 14-09-2016 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 Pfam PF00551 Formyl transferase 88 264 8.0E-52 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 282 1.2E-129 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 3.2E-68 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 3.2E-68 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 3.2E-68 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 43 55 3.2E-68 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 3.2E-68 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 3.2E-68 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 PANTHER PTHR10520:SF7 15 276 1.3E-136 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 282 45.698 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 SUPERFAMILY SSF53328 88 281 3.4E-60 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 Gene3D G3DSA:3.30.70.260 5 73 2.8E-12 T 14-09-2016 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 PIRSF PIRSF036480 6 282 9.8E-113 T 14-09-2016 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 PANTHER PTHR10520 15 276 1.3E-136 T 14-09-2016 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 SUPERFAMILY SSF55021 8 58 2.91E-8 T 14-09-2016 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 Gene3D G3DSA:3.40.50.170 88 279 5.3E-56 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS07860 cf60b5c3723fea719e40d5ec034492ae 282 Pfam PF01842 ACT domain 10 70 9.7E-7 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PAJ_RS18680 2305f9ccd74990bf2a9b8cc5e303987d 120 SUPERFAMILY SSF48300 3 57 1.44E-16 T 14-09-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS18680 2305f9ccd74990bf2a9b8cc5e303987d 120 Gene3D G3DSA:1.20.5.710 2 50 4.5E-23 T 14-09-2016 PAJ_RS18680 2305f9ccd74990bf2a9b8cc5e303987d 120 Gene3D G3DSA:3.30.1390.10 51 120 2.2E-28 T 14-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PAJ_RS18680 2305f9ccd74990bf2a9b8cc5e303987d 120 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 120 3.6E-41 T 14-09-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS18680 2305f9ccd74990bf2a9b8cc5e303987d 120 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 56 102 2.0E-14 T 14-09-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 PAJ_RS18680 2305f9ccd74990bf2a9b8cc5e303987d 120 SUPERFAMILY SSF54736 50 120 2.27E-22 T 14-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PAJ_RS18680 2305f9ccd74990bf2a9b8cc5e303987d 120 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 120 1.4E-25 T 14-09-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 PAJ_RS18680 2305f9ccd74990bf2a9b8cc5e303987d 120 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 48 2.2E-17 T 14-09-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS18680 2305f9ccd74990bf2a9b8cc5e303987d 120 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 120 23.628 T 14-09-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS22300 a4c75ad166d731b464f4d0fc5b948dca 163 Gene3D G3DSA:3.40.190.10 93 163 9.4E-25 T 14-09-2016 PAJ_RS22300 a4c75ad166d731b464f4d0fc5b948dca 163 PANTHER PTHR30118:SF7 1 163 1.9E-42 T 14-09-2016 PAJ_RS22300 a4c75ad166d731b464f4d0fc5b948dca 163 Gene3D G3DSA:3.40.190.10 2 92 2.7E-23 T 14-09-2016 PAJ_RS22300 a4c75ad166d731b464f4d0fc5b948dca 163 PANTHER PTHR30118 1 163 1.9E-42 T 14-09-2016 PAJ_RS22300 a4c75ad166d731b464f4d0fc5b948dca 163 SUPERFAMILY SSF53850 2 163 3.57E-33 T 14-09-2016 PAJ_RS22300 a4c75ad166d731b464f4d0fc5b948dca 163 Pfam PF03466 LysR substrate binding domain 10 162 1.1E-24 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS06395 2ba4a6beca25246763ce1834c52d3989 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.5E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06395 2ba4a6beca25246763ce1834c52d3989 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.5E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06395 2ba4a6beca25246763ce1834c52d3989 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.5E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06395 2ba4a6beca25246763ce1834c52d3989 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.5E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06395 2ba4a6beca25246763ce1834c52d3989 240 PANTHER PTHR24322 15 194 2.0E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06395 2ba4a6beca25246763ce1834c52d3989 240 PANTHER PTHR24322:SF540 15 194 2.0E-20 T 14-09-2016 PAJ_RS06395 2ba4a6beca25246763ce1834c52d3989 240 SUPERFAMILY SSF51735 12 240 7.55E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06395 2ba4a6beca25246763ce1834c52d3989 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 200 5.5E-21 T 14-09-2016 PAJ_RS06395 2ba4a6beca25246763ce1834c52d3989 240 Gene3D G3DSA:3.40.50.720 9 236 1.5E-38 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 142 3.9E-29 T 14-09-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 SMART SM00475 3 250 4.2E-90 T 14-09-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 PANTHER PTHR10133:SF39 1 249 6.1E-140 T 14-09-2016 PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 PANTHER PTHR10133 1 249 6.1E-140 T 14-09-2016 PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 SMART SM00279 162 197 1.6E-9 T 14-09-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 160 249 5.9E-23 T 14-09-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 SUPERFAMILY SSF88723 3 159 1.72E-37 T 14-09-2016 IPR029060 PIN domain-like PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 Gene3D G3DSA:3.40.50.1010 4 175 1.3E-46 T 14-09-2016 IPR029060 PIN domain-like PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 SUPERFAMILY SSF47807 160 243 3.29E-22 T 14-09-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 251 43.751 T 14-09-2016 IPR022895 Flap endonuclease Xni GO:0048256 PAJ_RS13070 d665426545f3f356515a016c05ad23ba 252 Gene3D G3DSA:1.10.150.20 176 235 1.2E-23 T 14-09-2016 PAJ_RS15745 2cc700790d85242f6bd26c6297797b48 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 1.4E-33 T 14-09-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15745 2cc700790d85242f6bd26c6297797b48 118 PANTHER PTHR10871 2 118 4.8E-68 T 14-09-2016 PAJ_RS15745 2cc700790d85242f6bd26c6297797b48 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 25.891 T 14-09-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15745 2cc700790d85242f6bd26c6297797b48 118 Gene3D G3DSA:1.10.8.50 2 71 6.4E-28 T 14-09-2016 PAJ_RS15745 2cc700790d85242f6bd26c6297797b48 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 4.4E-53 T 14-09-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15745 2cc700790d85242f6bd26c6297797b48 118 PIRSF PIRSF002134 1 118 1.4E-41 T 14-09-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15745 2cc700790d85242f6bd26c6297797b48 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 14-09-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS15745 2cc700790d85242f6bd26c6297797b48 118 SUPERFAMILY SSF46946 2 114 8.24E-46 T 14-09-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 PAJ_RS15745 2cc700790d85242f6bd26c6297797b48 118 Gene3D G3DSA:4.10.910.10 72 118 6.5E-27 T 14-09-2016 IPR027437 30s ribosomal protein S13, C-terminal PAJ_RS12485 6a20e3552e354cab6b3f4cbf156cfd45 468 PANTHER PTHR11785 2 452 1.2E-280 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS12485 6a20e3552e354cab6b3f4cbf156cfd45 468 ProSitePatterns PS00218 Amino acid permeases signature. 45 76 - T 14-09-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PAJ_RS12485 6a20e3552e354cab6b3f4cbf156cfd45 468 PIRSF PIRSF006060 1 467 1.0E-84 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS12485 6a20e3552e354cab6b3f4cbf156cfd45 468 Pfam PF00324 Amino acid permease 20 462 4.3E-118 T 14-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PAJ_RS12485 6a20e3552e354cab6b3f4cbf156cfd45 468 PANTHER PTHR11785:SF399 2 452 1.2E-280 T 14-09-2016 PAJ_RS19390 8c76bcc875ea331a27d1c2fbb17be133 444 PANTHER PTHR23024:SF198 46 127 3.1E-33 T 14-09-2016 PAJ_RS19390 8c76bcc875ea331a27d1c2fbb17be133 444 SUPERFAMILY SSF51905 1 221 6.26E-20 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19390 8c76bcc875ea331a27d1c2fbb17be133 444 PANTHER PTHR23024 46 127 3.1E-33 T 14-09-2016 PAJ_RS19390 8c76bcc875ea331a27d1c2fbb17be133 444 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 4 333 1.6E-113 T 14-09-2016 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PAJ_RS19390 8c76bcc875ea331a27d1c2fbb17be133 444 SUPERFAMILY SSF51905 166 332 9.5E-13 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19390 8c76bcc875ea331a27d1c2fbb17be133 444 Gene3D G3DSA:3.50.50.60 277 419 2.4E-5 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19390 8c76bcc875ea331a27d1c2fbb17be133 444 Gene3D G3DSA:3.50.50.60 94 215 1.8E-14 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 PANTHER PTHR32089 128 643 4.9E-116 T 14-09-2016 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 Pfam PF00672 HAMP domain 321 386 3.6E-10 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 Gene3D G3DSA:1.10.287.950 408 612 4.4E-55 T 14-09-2016 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 SMART SM00304 340 392 9.3E-8 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 SUPERFAMILY SSF103190 119 213 2.47E-10 T 14-09-2016 IPR029151 Periplasmic sensor domain-like PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 SMART SM00283 393 640 1.1E-77 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 Pfam PF17201 Cache 3/Cache 2 fusion domain 36 312 5.2E-74 T 14-09-2016 IPR033462 Cache 3/Cache 2 fusion domain PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 Gene3D G3DSA:3.30.450.20 187 312 1.5E-13 T 14-09-2016 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 414 443 5.6E-45 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 316 336 5.6E-45 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 520 549 5.6E-45 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 568 597 5.6E-45 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 491 518 5.6E-45 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 SUPERFAMILY SSF58104 361 641 5.36E-65 T 14-09-2016 PAJ_RS15335 baaddc55cd1be22a5c521401b5c55bd3 643 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 457 639 1.3E-52 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PANTHER PTHR10906 18 443 8.8E-236 T 14-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 14-09-2016 IPR030659 SecY conserved site PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PANTHER PTHR10906:SF2 18 443 8.8E-236 T 14-09-2016 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 429 4.7E-141 T 14-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 433 29.903 T 14-09-2016 IPR026593 Protein translocase subunit SecY PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PIRSF PIRSF004557 13 441 6.1E-124 T 14-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 Pfam PF00344 SecY translocase 76 417 4.5E-120 T 14-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 Gene3D G3DSA:1.10.3370.10 17 437 8.3E-168 T 14-09-2016 IPR023201 SecY subunit domain PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 SUPERFAMILY SSF103491 16 424 4.58E-134 T 14-09-2016 IPR023201 SecY subunit domain PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 14-09-2016 IPR030659 SecY conserved site PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 4.8E-99 T 14-09-2016 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 4.8E-99 T 14-09-2016 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 4.8E-99 T 14-09-2016 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 4.8E-99 T 14-09-2016 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 4.8E-99 T 14-09-2016 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 4.8E-99 T 14-09-2016 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 4.8E-99 T 14-09-2016 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 4.8E-99 T 14-09-2016 PAJ_RS15755 a43af55401f7a8e249084d71e1728997 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 4.8E-99 T 14-09-2016 PAJ_RS03940 76ade8345a52aedc1f917d629ea2f2c9 324 PANTHER PTHR40031:SF1 2 291 1.7E-40 T 14-09-2016 PAJ_RS03940 76ade8345a52aedc1f917d629ea2f2c9 324 PANTHER PTHR40031 2 291 1.7E-40 T 14-09-2016 PAJ_RS03940 76ade8345a52aedc1f917d629ea2f2c9 324 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 178 9.4E-24 T 14-09-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 SMART SM01217 685 754 2.4E-32 T 14-09-2016 IPR026891 Fibronectin type III-like domain PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 PANTHER PTHR30620 487 759 0.0 T 14-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 PANTHER PTHR30620 35 471 0.0 T 14-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 395 648 5.0E-58 T 14-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 46 352 2.6E-95 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 Gene3D G3DSA:3.40.50.1700 383 651 6.9E-76 T 14-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 Pfam PF14310 Fibronectin type III-like domain 686 754 3.5E-23 T 14-09-2016 IPR026891 Fibronectin type III-like domain PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 SUPERFAMILY SSF52279 395 464 1.57E-56 T 14-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 SUPERFAMILY SSF52279 495 651 1.57E-56 T 14-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 Gene3D G3DSA:3.20.20.300 32 366 5.0E-106 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 PANTHER PTHR30620:SF5 487 759 0.0 T 14-09-2016 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 PANTHER PTHR30620:SF5 35 471 0.0 T 14-09-2016 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 SUPERFAMILY SSF51445 32 394 3.16E-100 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 273 290 - T 14-09-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 120 139 4.6E-21 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 273 291 4.6E-21 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 166 182 4.6E-21 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 203 219 4.6E-21 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PAJ_RS03105 934bb33de4cdc8d8fd25c65ff8d30a04 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 101 117 4.6E-21 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PAJ_RS00210 f1d6e436339588fb12ce06950186e941 392 Gene3D G3DSA:1.20.1250.20 215 386 7.4E-21 T 14-09-2016 PAJ_RS00210 f1d6e436339588fb12ce06950186e941 392 Gene3D G3DSA:1.20.1250.20 12 196 9.9E-20 T 14-09-2016 PAJ_RS00210 f1d6e436339588fb12ce06950186e941 392 PANTHER PTHR23535:SF2 2 391 1.1E-173 T 14-09-2016 PAJ_RS00210 f1d6e436339588fb12ce06950186e941 392 PANTHER PTHR23535 2 391 1.1E-173 T 14-09-2016 PAJ_RS00210 f1d6e436339588fb12ce06950186e941 392 SUPERFAMILY SSF103473 12 386 3.79E-46 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS00210 f1d6e436339588fb12ce06950186e941 392 Pfam PF07690 Major Facilitator Superfamily 19 302 4.6E-26 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 SUPERFAMILY SSF53927 221 529 3.41E-128 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 460 4.8E-118 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 Pfam PF02142 MGS-like domain 19 132 1.3E-30 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 Gene3D G3DSA:3.40.140.20 253 371 4.0E-49 T 14-09-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 Gene3D G3DSA:3.40.140.20 377 519 9.2E-60 T 14-09-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 PANTHER PTHR11692 5 529 0.0 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 SUPERFAMILY SSF52335 7 197 7.33E-72 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 529 5.8E-263 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 529 45.405 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 PIRSF PIRSF000414 1 529 2.2E-227 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 SMART SM00798 137 461 1.3E-212 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 Gene3D G3DSA:3.40.50.1380 6 190 6.1E-87 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS18750 e6449e9a4f93977c9f37d0f75ef4ff7c 529 SMART SM00851 19 132 5.0E-64 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS06830 55329d384bfa70120418bb2146a68fe0 186 Pfam PF08281 Sigma-70, region 4 119 168 7.2E-8 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS06830 55329d384bfa70120418bb2146a68fe0 186 SUPERFAMILY SSF88946 16 82 5.49E-10 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS06830 55329d384bfa70120418bb2146a68fe0 186 SUPERFAMILY SSF88659 103 177 3.36E-11 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS06830 55329d384bfa70120418bb2146a68fe0 186 Gene3D G3DSA:1.10.1740.10 5 77 5.6E-10 T 14-09-2016 PAJ_RS06830 55329d384bfa70120418bb2146a68fe0 186 Pfam PF04542 Sigma-70 region 2 20 77 1.3E-8 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS06830 55329d384bfa70120418bb2146a68fe0 186 Gene3D G3DSA:1.10.10.10 115 176 6.2E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06830 55329d384bfa70120418bb2146a68fe0 186 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 172 1.3E-20 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS06830 55329d384bfa70120418bb2146a68fe0 186 PANTHER PTHR30173 21 185 5.1E-18 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 318 1.4E-70 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 449 7.3E-36 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 Gene3D G3DSA:3.30.390.30 338 450 1.6E-45 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 Gene3D G3DSA:3.50.50.60 148 247 6.4E-31 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 450 3.3E-217 T 14-09-2016 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 SUPERFAMILY SSF55424 336 450 1.72E-36 T 14-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PANTHER PTHR22912:SF106 1 450 1.9E-257 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 6.6E-29 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 6.6E-29 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 6.6E-29 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 6.6E-29 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 6.6E-29 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 1.0E-66 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 1.0E-66 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 1.0E-66 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 1.0E-66 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 1.0E-66 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 1.0E-66 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 1.0E-66 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.0E-66 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.0E-66 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 Gene3D G3DSA:3.50.50.60 2 147 4.0E-45 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 Gene3D G3DSA:3.50.50.60 248 333 2.5E-27 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PANTHER PTHR22912 1 450 1.9E-257 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 14-09-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 PIRSF PIRSF000350 1 447 6.5E-86 T 14-09-2016 PAJ_RS16600 5f99a6a7647dc362f7bc2d0434851eec 450 SUPERFAMILY SSF51905 1 365 2.88E-57 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 PANTHER PTHR24423:SF474 169 443 3.1E-101 T 14-09-2016 PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 PANTHER PTHR24423:SF474 77 137 3.1E-101 T 14-09-2016 PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 SMART SM00388 231 297 1.9E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 Gene3D G3DSA:3.30.565.10 284 442 2.2E-30 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 296 2.2E-10 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 Gene3D G3DSA:1.20.5.1040 96 178 6.0E-27 T 14-09-2016 PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 Gene3D G3DSA:1.20.5.1040 1 79 1.6E-18 T 14-09-2016 PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 442 3.6E-17 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 Pfam PF08521 Two-component sensor kinase N-terminal 17 154 4.7E-7 T 14-09-2016 IPR013727 Two-component sensor kinase, N-terminal PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 SMART SM00387 342 443 6.6E-20 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 PANTHER PTHR24423 169 443 3.1E-101 T 14-09-2016 PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 PANTHER PTHR24423 77 137 3.1E-101 T 14-09-2016 PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 SUPERFAMILY SSF55874 286 442 1.83E-32 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 Gene3D G3DSA:1.10.287.130 223 283 1.5E-11 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17575 2e113dceeec96ad9b7933b3be74ad7f8 443 SUPERFAMILY SSF47384 214 297 9.22E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS09815 c970c21060ad8a85e6d2bf20842c750b 258 Gene3D G3DSA:3.20.20.70 4 256 2.6E-87 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS09815 c970c21060ad8a85e6d2bf20842c750b 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 44.236 T 14-09-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 PAJ_RS09815 c970c21060ad8a85e6d2bf20842c750b 258 Pfam PF00977 Histidine biosynthesis protein 5 239 7.2E-77 T 14-09-2016 IPR006062 Histidine biosynthesis GO:0000105 PAJ_RS09815 c970c21060ad8a85e6d2bf20842c750b 258 SUPERFAMILY SSF51366 1 256 5.02E-73 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PAJ_RS09815 c970c21060ad8a85e6d2bf20842c750b 258 PANTHER PTHR21235 1 258 4.4E-115 T 14-09-2016 PAJ_RS09815 c970c21060ad8a85e6d2bf20842c750b 258 PANTHER PTHR21235:SF2 1 258 4.4E-115 T 14-09-2016 PAJ_RS09815 c970c21060ad8a85e6d2bf20842c750b 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 3.6E-115 T 14-09-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 PAJ_RS19410 ca900ef65192d4097989a27c85ffe641 172 Pfam PF07274 Protein of unknown function (DUF1440) 28 157 3.5E-48 T 14-09-2016 IPR009898 Protein of unknown function DUF1440 PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.5E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.5E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.5E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 Gene3D G3DSA:3.40.190.10 96 188 6.7E-5 T 14-09-2016 PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 SUPERFAMILY SSF46785 2 87 1.36E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 PANTHER PTHR30126 6 290 8.9E-104 T 14-09-2016 PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 SUPERFAMILY SSF53850 96 286 6.15E-23 T 14-09-2016 PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 PANTHER PTHR30126:SF23 6 290 8.9E-104 T 14-09-2016 PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 6.5E-20 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 Gene3D G3DSA:3.40.190.10 189 262 1.0E-11 T 14-09-2016 PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 Pfam PF03466 LysR substrate binding domain 96 288 4.0E-22 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS04995 2dd0624bfaeec635afb25277372796bd 299 Gene3D G3DSA:1.10.10.10 6 88 7.6E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07670 494e959a9536a1fa1938510db99cf4af 294 SUPERFAMILY SSF55120 69 233 4.32E-43 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS07670 494e959a9536a1fa1938510db99cf4af 294 Pfam PF00849 RNA pseudouridylate synthase 69 199 2.6E-16 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS07670 494e959a9536a1fa1938510db99cf4af 294 Pfam PF01479 S4 domain 4 43 3.2E-10 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS07670 494e959a9536a1fa1938510db99cf4af 294 Gene3D G3DSA:3.10.290.10 3 61 1.2E-13 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS07670 494e959a9536a1fa1938510db99cf4af 294 PANTHER PTHR21600 1 281 8.0E-101 T 14-09-2016 PAJ_RS07670 494e959a9536a1fa1938510db99cf4af 294 SMART SM00363 3 74 2.6E-9 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS07670 494e959a9536a1fa1938510db99cf4af 294 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 233 1.2E-62 T 14-09-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 PAJ_RS07670 494e959a9536a1fa1938510db99cf4af 294 SUPERFAMILY SSF55174 5 98 3.24E-11 T 14-09-2016 PAJ_RS07670 494e959a9536a1fa1938510db99cf4af 294 PANTHER PTHR21600:SF2 1 281 8.0E-101 T 14-09-2016 PAJ_RS07670 494e959a9536a1fa1938510db99cf4af 294 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 107 121 - T 14-09-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 PAJ_RS12315 094db9be795fc05b799871d98d00b543 337 Pfam PF00107 Zinc-binding dehydrogenase 172 291 8.7E-33 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS12315 094db9be795fc05b799871d98d00b543 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 1.1E-7 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS12315 094db9be795fc05b799871d98d00b543 337 Gene3D G3DSA:3.90.180.10 1 167 2.5E-38 T 14-09-2016 IPR011032 GroES-like PAJ_RS12315 094db9be795fc05b799871d98d00b543 337 PANTHER PTHR11695 15 336 9.4E-111 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS12315 094db9be795fc05b799871d98d00b543 337 Gene3D G3DSA:3.40.50.720 168 284 1.5E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12315 094db9be795fc05b799871d98d00b543 337 SUPERFAMILY SSF50129 1 166 2.2E-30 T 14-09-2016 IPR011032 GroES-like PAJ_RS12315 094db9be795fc05b799871d98d00b543 337 PANTHER PTHR11695:SF525 15 336 9.4E-111 T 14-09-2016 PAJ_RS12315 094db9be795fc05b799871d98d00b543 337 SUPERFAMILY SSF51735 138 313 1.61E-47 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12315 094db9be795fc05b799871d98d00b543 337 SMART SM00829 10 335 1.4E-28 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS11660 03a94e7d64ef0150962ccd79ef93ad1e 212 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 14-09-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS11660 03a94e7d64ef0150962ccd79ef93ad1e 212 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 30.962 T 14-09-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 PAJ_RS11660 03a94e7d64ef0150962ccd79ef93ad1e 212 Pfam PF00551 Formyl transferase 2 182 9.5E-64 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS11660 03a94e7d64ef0150962ccd79ef93ad1e 212 PANTHER PTHR10520 1 194 8.2E-104 T 14-09-2016 PAJ_RS11660 03a94e7d64ef0150962ccd79ef93ad1e 212 Gene3D G3DSA:3.40.50.170 1 195 2.4E-69 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS11660 03a94e7d64ef0150962ccd79ef93ad1e 212 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 191 2.6E-78 T 14-09-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 PAJ_RS11660 03a94e7d64ef0150962ccd79ef93ad1e 212 SUPERFAMILY SSF53328 2 203 9.16E-65 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PAJ_RS12825 2ac2bd7c6dfc1370b8014d3990b0e572 208 SUPERFAMILY SSF53335 11 204 2.48E-46 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS12825 2ac2bd7c6dfc1370b8014d3990b0e572 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 38.486 T 14-09-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 PAJ_RS12825 2ac2bd7c6dfc1370b8014d3990b0e572 208 Gene3D G3DSA:3.40.50.150 12 205 1.5E-62 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS12825 2ac2bd7c6dfc1370b8014d3990b0e572 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 7 205 3.1E-73 T 14-09-2016 PAJ_RS12825 2ac2bd7c6dfc1370b8014d3990b0e572 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 14-09-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 PAJ_RS12825 2ac2bd7c6dfc1370b8014d3990b0e572 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 2 206 1.0E-85 T 14-09-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 PAJ_RS12825 2ac2bd7c6dfc1370b8014d3990b0e572 208 PANTHER PTHR11579 9 206 4.6E-88 T 14-09-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 PAJ_RS05565 d7e6f6b26cd453cdd67742949d645da6 702 Pfam PF14331 ImcF-related N-terminal domain 203 475 2.4E-90 T 14-09-2016 IPR025743 ImcF-related, N-terminal domain PAJ_RS05565 d7e6f6b26cd453cdd67742949d645da6 702 PANTHER PTHR36153 8 671 9.6E-135 T 14-09-2016 PAJ_RS05565 d7e6f6b26cd453cdd67742949d645da6 702 Gene3D G3DSA:3.40.50.300 139 280 2.4E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05565 d7e6f6b26cd453cdd67742949d645da6 702 PANTHER PTHR36153:SF1 8 671 9.6E-135 T 14-09-2016 PAJ_RS05565 d7e6f6b26cd453cdd67742949d645da6 702 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 15 669 1.1E-188 T 14-09-2016 IPR017731 Type VI secretion system, IcmF PAJ_RS05565 d7e6f6b26cd453cdd67742949d645da6 702 SUPERFAMILY SSF52540 132 281 5.95E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05565 d7e6f6b26cd453cdd67742949d645da6 702 Pfam PF06761 Intracellular multiplication and human macrophage-killing 527 669 1.1E-28 T 14-09-2016 IPR009612 ImcF-related PAJ_RS05765 28ee96dcdcfa49498d1763b758803359 183 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 91 180 1.2E-35 T 14-09-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 PAJ_RS05765 28ee96dcdcfa49498d1763b758803359 183 PANTHER PTHR10938 13 183 1.1E-67 T 14-09-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 PAJ_RS05765 28ee96dcdcfa49498d1763b758803359 183 Gene3D G3DSA:3.10.20.80 13 86 1.1E-35 T 14-09-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 PAJ_RS05765 28ee96dcdcfa49498d1763b758803359 183 Gene3D G3DSA:3.30.110.10 87 182 5.6E-38 T 14-09-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 PAJ_RS05765 28ee96dcdcfa49498d1763b758803359 183 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 15 182 1.0E-73 T 14-09-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 PAJ_RS05765 28ee96dcdcfa49498d1763b758803359 183 SUPERFAMILY SSF55200 90 182 7.46E-32 T 14-09-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 PAJ_RS05765 28ee96dcdcfa49498d1763b758803359 183 ProSitePatterns PS00938 Initiation factor 3 signature. 66 79 - T 14-09-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 PAJ_RS05765 28ee96dcdcfa49498d1763b758803359 183 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 15 84 1.1E-31 T 14-09-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 PAJ_RS05765 28ee96dcdcfa49498d1763b758803359 183 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 9 182 30.466 T 14-09-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 PAJ_RS05765 28ee96dcdcfa49498d1763b758803359 183 SUPERFAMILY SSF54364 13 86 6.93E-29 T 14-09-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 PAJ_RS04705 e4493fb9fc12f32bd35dd287f058bdac 157 PRINTS PR00502 NUDIX hydrolase family signature 31 45 9.8E-6 T 14-09-2016 IPR020476 NUDIX hydrolase PAJ_RS04705 e4493fb9fc12f32bd35dd287f058bdac 157 PRINTS PR00502 NUDIX hydrolase family signature 45 60 9.8E-6 T 14-09-2016 IPR020476 NUDIX hydrolase PAJ_RS04705 e4493fb9fc12f32bd35dd287f058bdac 157 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PAJ_RS04705 e4493fb9fc12f32bd35dd287f058bdac 157 Pfam PF00293 NUDIX domain 4 114 2.0E-16 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS04705 e4493fb9fc12f32bd35dd287f058bdac 157 SUPERFAMILY SSF55811 5 151 4.47E-29 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS04705 e4493fb9fc12f32bd35dd287f058bdac 157 PANTHER PTHR22769:SF14 1 141 7.3E-27 T 14-09-2016 PAJ_RS04705 e4493fb9fc12f32bd35dd287f058bdac 157 Gene3D G3DSA:3.90.79.10 2 138 7.2E-30 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS04705 e4493fb9fc12f32bd35dd287f058bdac 157 PANTHER PTHR22769 1 141 7.3E-27 T 14-09-2016 PAJ_RS00190 5f18ba105bf871a680576b6d10142dd1 233 SMART SM00382 24 214 9.5E-20 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS00190 5f18ba105bf871a680576b6d10142dd1 233 PANTHER PTHR24220 1 219 1.8E-95 T 14-09-2016 PAJ_RS00190 5f18ba105bf871a680576b6d10142dd1 233 PANTHER PTHR24220:SF439 1 219 1.8E-95 T 14-09-2016 PAJ_RS00190 5f18ba105bf871a680576b6d10142dd1 233 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 213 5.8E-102 T 14-09-2016 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0006810|GO:0016021|GO:0042626 PAJ_RS00190 5f18ba105bf871a680576b6d10142dd1 233 SUPERFAMILY SSF52540 1 220 4.75E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00190 5f18ba105bf871a680576b6d10142dd1 233 Pfam PF00005 ABC transporter 18 157 1.7E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS00190 5f18ba105bf871a680576b6d10142dd1 233 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS00190 5f18ba105bf871a680576b6d10142dd1 233 Gene3D G3DSA:3.40.50.300 1 221 6.0E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13420 32b308c0907cbbd14708612e43df10ca 306 ProSitePatterns PS01053 Arginase family signature. 229 250 - T 14-09-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 PAJ_RS13420 32b308c0907cbbd14708612e43df10ca 306 Gene3D G3DSA:3.40.800.10 12 303 5.4E-93 T 14-09-2016 IPR023696 Ureohydrolase domain PAJ_RS13420 32b308c0907cbbd14708612e43df10ca 306 PIRSF PIRSF036979 15 305 1.1E-93 T 14-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PAJ_RS13420 32b308c0907cbbd14708612e43df10ca 306 TIGRFAM TIGR01230 agmatinase: agmatinase 24 299 1.8E-100 T 14-09-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 PAJ_RS13420 32b308c0907cbbd14708612e43df10ca 306 Pfam PF00491 Arginase family 35 297 2.3E-82 T 14-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PAJ_RS13420 32b308c0907cbbd14708612e43df10ca 306 PANTHER PTHR11358 1 298 4.7E-99 T 14-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PAJ_RS13420 32b308c0907cbbd14708612e43df10ca 306 Hamap MF_01418 Agmatinase [speB]. 2 305 65.205 T 14-09-2016 IPR023694 Agmatinase GO:0008783|GO:0009446|GO:0030145 KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 PAJ_RS13420 32b308c0907cbbd14708612e43df10ca 306 SUPERFAMILY SSF52768 14 302 1.98E-88 T 14-09-2016 PAJ_RS13420 32b308c0907cbbd14708612e43df10ca 306 PANTHER PTHR11358:SF26 1 298 4.7E-99 T 14-09-2016 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 8.4E-116 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 SUPERFAMILY SSF53671 4 306 3.93E-99 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 2.8E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 2.8E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 2.8E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 2.8E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 Gene3D G3DSA:3.40.50.1370 145 292 4.4E-54 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 Gene3D G3DSA:3.40.50.1370 8 144 3.4E-51 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PANTHER PTHR11405:SF16 1 311 1.4E-144 T 14-09-2016 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 1.2E-27 T 14-09-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 37.651 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 3.8E-44 T 14-09-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PANTHER PTHR11405 1 311 1.4E-144 T 14-09-2016 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 9.1E-36 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 9.1E-36 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 9.1E-36 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 9.1E-36 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 9.1E-36 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS20065 25cf4a59bcc896271980c50d7834fa6d 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 9.1E-36 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 SMART SM00487 28 234 2.3E-52 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 PANTHER PTHR24031 1 427 3.5E-273 T 14-09-2016 PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 SUPERFAMILY SSF52540 84 362 2.02E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 14-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 Pfam PF00271 Helicase conserved C-terminal domain 243 351 3.1E-28 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 Pfam PF00270 DEAD/DEAH box helicase 33 206 1.0E-44 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 PANTHER PTHR24031:SF173 1 427 3.5E-273 T 14-09-2016 PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 Gene3D G3DSA:3.40.50.300 224 380 9.2E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.823 T 14-09-2016 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 Gene3D G3DSA:3.40.50.300 8 223 3.5E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18265 ff400470b5c4089e6db63cca054da8ba 430 SMART SM00490 270 351 3.1E-31 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS08350 c6ba938035f497325ed15a4f58b2029b 324 PANTHER PTHR30606:SF4 10 324 9.8E-197 T 14-09-2016 PAJ_RS08350 c6ba938035f497325ed15a4f58b2029b 324 PANTHER PTHR30606 10 324 9.8E-197 T 14-09-2016 PAJ_RS08350 c6ba938035f497325ed15a4f58b2029b 324 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 5 311 53.515 T 14-09-2016 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243|KEGG: 00600+2.3.1.24|UniPathway: UPA00030|UniPathway: UPA00360 PAJ_RS08350 c6ba938035f497325ed15a4f58b2029b 324 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 11 315 3.1E-143 T 14-09-2016 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243|KEGG: 00600+2.3.1.24|UniPathway: UPA00030|UniPathway: UPA00360 PAJ_RS08350 c6ba938035f497325ed15a4f58b2029b 324 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 14 306 8.5E-99 T 14-09-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PAJ_RS08350 c6ba938035f497325ed15a4f58b2029b 324 PIRSF PIRSF026649 10 315 1.2E-96 T 14-09-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 PANTHER PTHR30154 1 152 1.7E-55 T 14-09-2016 PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 SMART SM00344 3 112 2.2E-39 T 14-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 Pfam PF01037 Lrp/AsnC ligand binding domain 71 143 2.9E-18 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 Gene3D G3DSA:1.10.10.10 4 55 7.8E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 SUPERFAMILY SSF54909 64 151 6.44E-17 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 PANTHER PTHR30154:SF28 1 152 1.7E-55 T 14-09-2016 PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 9.0E-17 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 9.0E-17 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 9.0E-17 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 Gene3D G3DSA:3.30.70.920 56 140 7.8E-25 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 SUPERFAMILY SSF46785 3 62 6.92E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09590 ebecb81a6a74b37199b4aa1b2d100edc 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 6.2E-20 T 14-09-2016 PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 Gene3D G3DSA:1.10.260.40 1 50 6.6E-25 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 Pfam PF13377 Periplasmic binding protein-like domain 166 327 7.3E-43 T 14-09-2016 PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 PANTHER PTHR30146:SF38 1 327 8.4E-210 T 14-09-2016 PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 PANTHER PTHR30146 1 327 8.4E-210 T 14-09-2016 PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 1.4E-20 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 ProSitePatterns PS00356 LacI-type HTH domain signature. 1 19 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 SMART SM00354 1 68 2.7E-32 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 Gene3D G3DSA:3.40.50.2300 174 306 3.4E-54 T 14-09-2016 PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 SUPERFAMILY SSF53822 58 327 9.06E-90 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 SUPERFAMILY SSF47413 1 57 1.33E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS17535 f9de58bf2f70234348baeb4bfe0edad2 327 Gene3D G3DSA:3.40.50.2300 51 173 4.8E-42 T 14-09-2016 PAJ_RS13280 74a1a0a7c8519fb1f846fe9ab3c2efb2 88 PANTHER PTHR39585:SF1 1 88 5.6E-35 T 14-09-2016 PAJ_RS13280 74a1a0a7c8519fb1f846fe9ab3c2efb2 88 PANTHER PTHR39585 1 88 5.6E-35 T 14-09-2016 PAJ_RS13280 74a1a0a7c8519fb1f846fe9ab3c2efb2 88 Gene3D G3DSA:1.10.150.250 2 85 1.2E-29 T 14-09-2016 IPR005631 Flavinator of succinate dehydrogenase PAJ_RS13280 74a1a0a7c8519fb1f846fe9ab3c2efb2 88 Pfam PF03937 Flavinator of succinate dehydrogenase 7 76 3.5E-24 T 14-09-2016 IPR005631 Flavinator of succinate dehydrogenase PAJ_RS13280 74a1a0a7c8519fb1f846fe9ab3c2efb2 88 SUPERFAMILY SSF109910 1 78 1.23E-25 T 14-09-2016 IPR005631 Flavinator of succinate dehydrogenase PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 Pfam PF03330 Lytic transglycolase 77 166 1.2E-23 T 14-09-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 PANTHER PTHR34183:SF1 308 386 8.5E-97 T 14-09-2016 PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 Pfam PF05036 Sporulation related domain 313 383 1.3E-15 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 Gene3D G3DSA:2.40.40.10 116 169 7.3E-5 T 14-09-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 SUPERFAMILY SSF110997 313 383 2.22E-13 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 Gene3D G3DSA:3.30.70.1070 313 383 3.7E-13 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 SUPERFAMILY SSF50685 72 169 3.49E-10 T 14-09-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 79 177 9.6E-34 T 14-09-2016 IPR012997 Rare lipoprotein A PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 PANTHER PTHR34183:SF1 24 228 8.5E-97 T 14-09-2016 PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 PANTHER PTHR34183 308 386 8.5E-97 T 14-09-2016 PAJ_RS02435 4f04079b1e049a34c4548bccecd9c5f9 387 PANTHER PTHR34183 24 228 8.5E-97 T 14-09-2016 PAJ_RS03810 bdb4079ecb1e925731333035c587a425 194 Gene3D G3DSA:3.40.50.10610 14 186 1.9E-17 T 14-09-2016 IPR005586 ABC-type transport auxiliary lipoprotein component PAJ_RS03810 bdb4079ecb1e925731333035c587a425 194 SUPERFAMILY SSF159594 23 186 4.18E-31 T 14-09-2016 PAJ_RS03810 bdb4079ecb1e925731333035c587a425 194 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 25 181 4.0E-40 T 14-09-2016 IPR005586 ABC-type transport auxiliary lipoprotein component PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615:SF149 1 182 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615:SF149 397 481 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 Gene3D G3DSA:3.40.228.10 152 262 1.3E-67 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 Gene3D G3DSA:3.40.228.10 1 108 1.3E-67 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615 397 481 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615 1 182 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 Gene3D G3DSA:3.40.50.740 320 470 1.6E-56 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 802 0.0 T 14-09-2016 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 Pfam PF01568 Molydopterin dinucleotide binding domain 692 796 9.5E-12 T 14-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615:SF149 668 802 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615:SF149 286 380 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 Gene3D G3DSA:2.40.40.20 604 803 9.9E-44 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615 668 802 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615 286 380 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 SUPERFAMILY SSF53706 1 638 2.3E-223 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 SUPERFAMILY SSF50692 674 803 3.84E-38 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 SUPERFAMILY SSF50692 617 647 3.84E-38 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615 573 646 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615 210 247 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615:SF149 573 646 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 PANTHER PTHR11615:SF149 210 247 4.0E-261 T 14-09-2016 PAJ_RS01215 b665f2b3efa6452fe9fd5cda94607f99 803 Pfam PF00384 Molybdopterin oxidoreductase 2 377 2.4E-19 T 14-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PANTHER PTHR11405:SF42 297 335 1.8E-215 T 14-09-2016 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PANTHER PTHR11405:SF42 1 276 1.8E-215 T 14-09-2016 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PANTHER PTHR11405 1 276 1.8E-215 T 14-09-2016 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PANTHER PTHR11405 297 335 1.8E-215 T 14-09-2016 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 SUPERFAMILY SSF53671 2 334 1.83E-99 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 2.5E-31 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 2.5E-31 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 2.5E-31 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 2.5E-31 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 2.5E-31 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 Gene3D G3DSA:3.40.50.1370 3 143 7.1E-57 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 Gene3D G3DSA:3.40.50.1370 144 319 1.0E-72 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 2.1E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 2.1E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 2.1E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 2.1E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 333 82.271 T 14-09-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 7 332 8.8E-135 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 330 5.8E-55 T 14-09-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 PAJ_RS20070 804839c73fac96b589285c69df90db55 335 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 147 4.5E-47 T 14-09-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 PAJ_RS02835 115b1ea3f4c00d1ce7537c1b3566a7cb 612 Pfam PF00672 HAMP domain 283 350 2.9E-14 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS02835 115b1ea3f4c00d1ce7537c1b3566a7cb 612 SMART SM00283 355 602 2.3E-79 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS02835 115b1ea3f4c00d1ce7537c1b3566a7cb 612 Gene3D G3DSA:1.10.287.950 370 574 5.3E-58 T 14-09-2016 PAJ_RS02835 115b1ea3f4c00d1ce7537c1b3566a7cb 612 PANTHER PTHR32089 288 605 7.1E-148 T 14-09-2016 PAJ_RS02835 115b1ea3f4c00d1ce7537c1b3566a7cb 612 PANTHER PTHR32089:SF35 288 605 7.1E-148 T 14-09-2016 PAJ_RS02835 115b1ea3f4c00d1ce7537c1b3566a7cb 612 SMART SM00304 302 354 3.4E-9 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS02835 115b1ea3f4c00d1ce7537c1b3566a7cb 612 SUPERFAMILY SSF58104 322 603 1.06E-69 T 14-09-2016 PAJ_RS02835 115b1ea3f4c00d1ce7537c1b3566a7cb 612 SMART SM01358 33 280 8.7E-22 T 14-09-2016 IPR032255 Helical bimodular sensor domain PAJ_RS02835 115b1ea3f4c00d1ce7537c1b3566a7cb 612 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 408 601 4.5E-57 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS04570 6f88de88ba962cc3a4a178489726ea77 211 Pfam PF02223 Thymidylate kinase 8 196 2.9E-59 T 14-09-2016 PAJ_RS04570 6f88de88ba962cc3a4a178489726ea77 211 ProSitePatterns PS01331 Thymidylate kinase signature. 95 107 - T 14-09-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 PAJ_RS04570 6f88de88ba962cc3a4a178489726ea77 211 SUPERFAMILY SSF52540 1 205 1.61E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04570 6f88de88ba962cc3a4a178489726ea77 211 PANTHER PTHR10344 1 210 2.6E-70 T 14-09-2016 PAJ_RS04570 6f88de88ba962cc3a4a178489726ea77 211 Hamap MF_00165 Thymidylate kinase [tmk]. 4 206 28.245 T 14-09-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 PAJ_RS04570 6f88de88ba962cc3a4a178489726ea77 211 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 196 6.0E-64 T 14-09-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 PAJ_RS04570 6f88de88ba962cc3a4a178489726ea77 211 Gene3D G3DSA:3.40.50.300 4 206 2.1E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01730 db99e13fdbccfbae29d2a9df9d6ba3f3 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 14-09-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 PAJ_RS01730 db99e13fdbccfbae29d2a9df9d6ba3f3 90 SMART SM00411 1 90 3.4E-44 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS01730 db99e13fdbccfbae29d2a9df9d6ba3f3 90 SUPERFAMILY SSF47729 1 90 1.37E-33 T 14-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PAJ_RS01730 db99e13fdbccfbae29d2a9df9d6ba3f3 90 Gene3D G3DSA:4.10.520.10 1 90 5.7E-37 T 14-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PAJ_RS01730 db99e13fdbccfbae29d2a9df9d6ba3f3 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 3.6E-34 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS01730 db99e13fdbccfbae29d2a9df9d6ba3f3 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 6.1E-20 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS01730 db99e13fdbccfbae29d2a9df9d6ba3f3 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 6.1E-20 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS01730 db99e13fdbccfbae29d2a9df9d6ba3f3 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 6.1E-20 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS01730 db99e13fdbccfbae29d2a9df9d6ba3f3 90 PANTHER PTHR33175 1 90 5.2E-45 T 14-09-2016 PAJ_RS17990 82f0a56f50dd7ba24eb6b57b3099524f 196 PANTHER PTHR23026:SF110 1 196 8.2E-83 T 14-09-2016 PAJ_RS17990 82f0a56f50dd7ba24eb6b57b3099524f 196 Pfam PF00881 Nitroreductase family 18 174 2.7E-16 T 14-09-2016 IPR029479 Nitroreductase PAJ_RS17990 82f0a56f50dd7ba24eb6b57b3099524f 196 Hamap MF_01204 Probable malonic semialdehyde reductase RutE [rutE]. 2 196 43.385 T 14-09-2016 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE GO:0016491|GO:0055114 PAJ_RS17990 82f0a56f50dd7ba24eb6b57b3099524f 196 PANTHER PTHR23026 1 196 8.2E-83 T 14-09-2016 PAJ_RS17990 82f0a56f50dd7ba24eb6b57b3099524f 196 SUPERFAMILY SSF55469 11 195 4.97E-41 T 14-09-2016 IPR000415 Nitroreductase-like GO:0016491 PAJ_RS17990 82f0a56f50dd7ba24eb6b57b3099524f 196 Gene3D G3DSA:3.40.109.10 4 195 3.0E-43 T 14-09-2016 IPR000415 Nitroreductase-like GO:0016491 PAJ_RS15930 0b1d9fdd68175eaed3ce8e1116b77c57 186 Gene3D G3DSA:3.10.50.40 126 141 5.5E-17 T 14-09-2016 PAJ_RS15930 0b1d9fdd68175eaed3ce8e1116b77c57 186 Gene3D G3DSA:3.10.50.40 2 80 5.5E-17 T 14-09-2016 PAJ_RS15930 0b1d9fdd68175eaed3ce8e1116b77c57 186 PANTHER PTHR10516:SF316 129 186 6.0E-60 T 14-09-2016 PAJ_RS15930 0b1d9fdd68175eaed3ce8e1116b77c57 186 SUPERFAMILY SSF54534 2 140 2.36E-33 T 14-09-2016 PAJ_RS15930 0b1d9fdd68175eaed3ce8e1116b77c57 186 PANTHER PTHR10516 129 186 6.0E-60 T 14-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PAJ_RS15930 0b1d9fdd68175eaed3ce8e1116b77c57 186 PANTHER PTHR10516 1 83 6.0E-60 T 14-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PAJ_RS15930 0b1d9fdd68175eaed3ce8e1116b77c57 186 PANTHER PTHR10516:SF316 1 83 6.0E-60 T 14-09-2016 PAJ_RS15930 0b1d9fdd68175eaed3ce8e1116b77c57 186 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 136 4.5E-10 T 14-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PAJ_RS04870 73d089d2f01e9ae5f585d1a80507c29a 307 PIRSF PIRSF028757 1 303 1.9E-72 T 14-09-2016 IPR003507 Peptidase family S66 PAJ_RS04870 73d089d2f01e9ae5f585d1a80507c29a 307 SUPERFAMILY SSF52317 5 163 3.43E-34 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS04870 73d089d2f01e9ae5f585d1a80507c29a 307 Gene3D G3DSA:3.40.50.10740 5 163 1.8E-41 T 14-09-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain PAJ_RS04870 73d089d2f01e9ae5f585d1a80507c29a 307 PANTHER PTHR30237:SF2 6 306 1.5E-94 T 14-09-2016 PAJ_RS04870 73d089d2f01e9ae5f585d1a80507c29a 307 Gene3D G3DSA:3.50.30.60 165 295 1.5E-43 T 14-09-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain PAJ_RS04870 73d089d2f01e9ae5f585d1a80507c29a 307 SUPERFAMILY SSF141986 141 293 5.62E-44 T 14-09-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain PAJ_RS04870 73d089d2f01e9ae5f585d1a80507c29a 307 PANTHER PTHR30237 6 306 1.5E-94 T 14-09-2016 PAJ_RS04870 73d089d2f01e9ae5f585d1a80507c29a 307 Pfam PF02016 LD-carboxypeptidase 6 288 9.7E-70 T 14-09-2016 IPR003507 Peptidase family S66 PAJ_RS00160 6b5be6b2cacdcd205aa9de9a17eeff5f 793 Pfam PF03968 OstA-like protein 52 193 4.5E-28 T 14-09-2016 IPR005653 Organic solvent tolerance-like, N-terminal PAJ_RS00160 6b5be6b2cacdcd205aa9de9a17eeff5f 793 Gene3D G3DSA:2.60.450.10 46 208 1.1E-24 T 14-09-2016 PAJ_RS00160 6b5be6b2cacdcd205aa9de9a17eeff5f 793 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 8 772 20.946 T 14-09-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 PAJ_RS00160 6b5be6b2cacdcd205aa9de9a17eeff5f 793 PANTHER PTHR30189 5 790 5.8E-116 T 14-09-2016 PAJ_RS00160 6b5be6b2cacdcd205aa9de9a17eeff5f 793 Pfam PF04453 Organic solvent tolerance protein 311 708 7.6E-97 T 14-09-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 PAJ_RS07085 f1fe0ecdc8efbc69bccabb0dbb81e2d8 184 Pfam PF08281 Sigma-70, region 4 127 178 7.4E-13 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS07085 f1fe0ecdc8efbc69bccabb0dbb81e2d8 184 PANTHER PTHR30173:SF31 2 181 1.3E-41 T 14-09-2016 PAJ_RS07085 f1fe0ecdc8efbc69bccabb0dbb81e2d8 184 Gene3D G3DSA:1.10.1740.10 5 115 1.0E-22 T 14-09-2016 PAJ_RS07085 f1fe0ecdc8efbc69bccabb0dbb81e2d8 184 SUPERFAMILY SSF88659 121 182 1.48E-15 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS07085 f1fe0ecdc8efbc69bccabb0dbb81e2d8 184 SUPERFAMILY SSF88946 3 113 2.35E-24 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS07085 f1fe0ecdc8efbc69bccabb0dbb81e2d8 184 PANTHER PTHR30173 2 181 1.3E-41 T 14-09-2016 PAJ_RS07085 f1fe0ecdc8efbc69bccabb0dbb81e2d8 184 Pfam PF04542 Sigma-70 region 2 27 94 3.1E-13 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS07085 f1fe0ecdc8efbc69bccabb0dbb81e2d8 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 181 2.1E-24 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS07085 f1fe0ecdc8efbc69bccabb0dbb81e2d8 184 Gene3D G3DSA:1.10.10.10 121 182 1.4E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 Gene3D G3DSA:3.30.1340.10 286 373 3.3E-31 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 PRINTS PR00107 Phosphocarrier protein signature 296 312 5.4E-17 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 PRINTS PR00107 Phosphocarrier protein signature 324 339 5.4E-17 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 PRINTS PR00107 Phosphocarrier protein signature 339 356 5.4E-17 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 286 368 5.1E-22 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 Gene3D G3DSA:3.40.930.10 149 280 2.2E-9 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 325 340 - T 14-09-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 SUPERFAMILY SSF55594 286 374 2.22E-24 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 Gene3D G3DSA:3.40.930.10 5 140 2.6E-38 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 PANTHER PTHR30181:SF3 2 376 4.4E-171 T 14-09-2016 PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 7 138 1.1E-27 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 SUPERFAMILY SSF55804 3 139 2.09E-37 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 Pfam PF00381 PTS HPr component phosphorylation site 287 368 1.0E-23 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 296 303 - T 14-09-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 SUPERFAMILY SSF55804 148 275 4.88E-12 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS10245 c6babec2c9800049844ef8376112cf50 376 PANTHER PTHR30181 2 376 4.4E-171 T 14-09-2016 PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 169 229 4.0E-11 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 SUPERFAMILY SSF49354 26 147 6.28E-36 T 14-09-2016 IPR008962 PapD-like PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 Gene3D G3DSA:2.60.40.1070 156 242 9.4E-20 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 Gene3D G3DSA:2.60.40.360 26 143 4.2E-40 T 14-09-2016 IPR008962 PapD-like PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 PANTHER PTHR30251:SF6 1 239 3.1E-78 T 14-09-2016 PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 SUPERFAMILY SSF49584 156 243 5.89E-19 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 PANTHER PTHR30251 1 239 3.1E-78 T 14-09-2016 PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 26 143 3.1E-35 T 14-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 101 118 - T 14-09-2016 IPR018046 Pili assembly chaperone, conserved site PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 PRINTS PR00969 Pili chaperone signature 26 35 7.6E-27 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 PRINTS PR00969 Pili chaperone signature 125 140 7.6E-27 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 PRINTS PR00969 Pili chaperone signature 72 93 7.6E-27 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 PRINTS PR00969 Pili chaperone signature 164 179 7.6E-27 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS11060 5c10ac51f78d23f236d8a80521e2a839 264 PRINTS PR00969 Pili chaperone signature 102 119 7.6E-27 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS18270 73dc2c08cb3b3b3cf19681438306506e 110 SUPERFAMILY SSF52833 2 109 2.57E-42 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS18270 73dc2c08cb3b3b3cf19681438306506e 110 Gene3D G3DSA:3.40.30.10 3 109 7.9E-43 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS18270 73dc2c08cb3b3b3cf19681438306506e 110 PANTHER PTHR10438 1 110 1.4E-40 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PAJ_RS18270 73dc2c08cb3b3b3cf19681438306506e 110 TIGRFAM TIGR01068 thioredoxin: thioredoxin 10 108 1.6E-39 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PAJ_RS18270 73dc2c08cb3b3b3cf19681438306506e 110 PRINTS PR00421 Thioredoxin family signature 73 84 3.9E-10 T 14-09-2016 PAJ_RS18270 73dc2c08cb3b3b3cf19681438306506e 110 PRINTS PR00421 Thioredoxin family signature 33 42 3.9E-10 T 14-09-2016 PAJ_RS18270 73dc2c08cb3b3b3cf19681438306506e 110 PRINTS PR00421 Thioredoxin family signature 25 33 3.9E-10 T 14-09-2016 PAJ_RS18270 73dc2c08cb3b3b3cf19681438306506e 110 ProSitePatterns PS00194 Thioredoxin family active site. 26 44 - T 14-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PAJ_RS18270 73dc2c08cb3b3b3cf19681438306506e 110 Pfam PF00085 Thioredoxin 6 107 5.2E-34 T 14-09-2016 IPR013766 Thioredoxin domain GO:0045454 PAJ_RS18270 73dc2c08cb3b3b3cf19681438306506e 110 PIRSF PIRSF000077 3 109 8.4E-45 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 SUPERFAMILY SSF47413 1 59 2.52E-18 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 SUPERFAMILY SSF53822 61 331 6.67E-77 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 Gene3D G3DSA:1.10.260.40 2 57 1.6E-25 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 PANTHER PTHR30146 1 333 7.0E-188 T 14-09-2016 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 SMART SM00354 1 71 1.3E-34 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.5E-7 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.5E-7 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 Gene3D G3DSA:3.40.50.2300 58 167 6.0E-45 T 14-09-2016 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 Pfam PF13377 Periplasmic binding protein-like domain 170 329 2.3E-33 T 14-09-2016 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 PANTHER PTHR30146:SF55 1 333 7.0E-188 T 14-09-2016 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 Gene3D G3DSA:3.40.50.2300 168 305 1.1E-48 T 14-09-2016 PAJ_RS10160 2eb3c7e972003920109adcb735f51079 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 9.7E-20 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS19525 bfa97d2e2c7bf10c9500ba51b77b353c 107 Pfam PF03795 YCII-related domain 1 77 5.7E-9 T 14-09-2016 IPR005545 YCII-related PAJ_RS19525 bfa97d2e2c7bf10c9500ba51b77b353c 107 Gene3D G3DSA:3.30.70.1060 1 78 2.0E-10 T 14-09-2016 PAJ_RS19525 bfa97d2e2c7bf10c9500ba51b77b353c 107 SUPERFAMILY SSF54909 1 77 3.75E-13 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS06925 dff9f56997f4754193678009302cecec 87 PANTHER PTHR33609 1 87 1.3E-37 T 14-09-2016 PAJ_RS06925 dff9f56997f4754193678009302cecec 87 SUPERFAMILY SSF46689 1 68 7.88E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06925 dff9f56997f4754193678009302cecec 87 Pfam PF01527 Transposase 2 70 6.3E-22 T 14-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PAJ_RS06925 dff9f56997f4754193678009302cecec 87 Gene3D G3DSA:1.10.10.60 7 82 8.8E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS08540 94d9aee04655919cb6dd59c6d18eb180 116 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 1 104 28.451 T 14-09-2016 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 PAJ_RS08540 94d9aee04655919cb6dd59c6d18eb180 116 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 9 94 2.0E-38 T 14-09-2016 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 PAJ_RS08540 94d9aee04655919cb6dd59c6d18eb180 116 SUPERFAMILY SSF63592 1 98 2.88E-38 T 14-09-2016 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 PAJ_RS08540 94d9aee04655919cb6dd59c6d18eb180 116 Pfam PF05247 Flagellar transcriptional activator (FlhD) 1 100 2.2E-40 T 14-09-2016 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 Gene3D G3DSA:3.40.710.10 29 284 2.1E-98 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 PANTHER PTHR21581:SF4 13 400 6.9E-266 T 14-09-2016 PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 SUPERFAMILY SSF69189 285 378 8.83E-27 T 14-09-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 SMART SM00936 285 376 9.9E-37 T 14-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 264 2.8E-101 T 14-09-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 Gene3D G3DSA:2.60.410.10 285 376 8.6E-33 T 14-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 285 376 4.4E-26 T 14-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 151 164 3.2E-18 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 65 76 3.2E-18 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 124 141 3.2E-18 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 SUPERFAMILY SSF56601 11 285 2.2E-84 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS03395 92fd1d4848aaaa194246e34192cabf27 400 PANTHER PTHR21581 13 400 6.9E-266 T 14-09-2016 PAJ_RS10615 6be7f58fe7b87e1a3c2c3ec568a4d499 171 Gene3D G3DSA:3.40.30.10 91 169 5.9E-9 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10615 6be7f58fe7b87e1a3c2c3ec568a4d499 171 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 29 171 1.7E-50 T 14-09-2016 PAJ_RS10615 6be7f58fe7b87e1a3c2c3ec568a4d499 171 PIRSF PIRSF000216 2 171 1.0E-53 T 14-09-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 PAJ_RS10615 6be7f58fe7b87e1a3c2c3ec568a4d499 171 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 27 171 6.0E-52 T 14-09-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 PAJ_RS10615 6be7f58fe7b87e1a3c2c3ec568a4d499 171 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 128 146 - T 14-09-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 PAJ_RS10615 6be7f58fe7b87e1a3c2c3ec568a4d499 171 PANTHER PTHR10371:SF7 13 171 2.7E-115 T 14-09-2016 PAJ_RS10615 6be7f58fe7b87e1a3c2c3ec568a4d499 171 SUPERFAMILY SSF52833 21 170 1.23E-48 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10615 6be7f58fe7b87e1a3c2c3ec568a4d499 171 PANTHER PTHR10371 13 171 2.7E-115 T 14-09-2016 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 Pfam PF00691 OmpA family 233 326 7.7E-24 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 ProSitePatterns PS01068 OmpA-like domain. 268 312 - T 14-09-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PANTHER PTHR30128:SF16 1 357 1.6E-127 T 14-09-2016 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PRINTS PR01022 Outer membrane protein A signature 324 337 6.7E-68 T 14-09-2016 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PRINTS PR01022 Outer membrane protein A signature 251 270 6.7E-68 T 14-09-2016 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PRINTS PR01022 Outer membrane protein A signature 112 128 6.7E-68 T 14-09-2016 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PRINTS PR01022 Outer membrane protein A signature 175 189 6.7E-68 T 14-09-2016 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PRINTS PR01022 Outer membrane protein A signature 189 203 6.7E-68 T 14-09-2016 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PRINTS PR01022 Outer membrane protein A signature 222 237 6.7E-68 T 14-09-2016 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PRINTS PR01022 Outer membrane protein A signature 290 309 6.7E-68 T 14-09-2016 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 SUPERFAMILY SSF56925 22 204 8.89E-43 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PRINTS PR01021 OMPA domain signature 266 281 1.2E-23 T 14-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PRINTS PR01021 OMPA domain signature 234 256 1.2E-23 T 14-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PRINTS PR01021 OMPA domain signature 281 297 1.2E-23 T 14-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 Pfam PF01389 OmpA-like transmembrane domain 23 204 5.4E-73 T 14-09-2016 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 PANTHER PTHR30128 1 357 1.6E-127 T 14-09-2016 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 Gene3D G3DSA:3.30.1330.60 223 345 3.6E-41 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 Gene3D G3DSA:2.40.160.20 11 222 3.6E-80 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS03830 6c392412019012085b3c5e4050a0ba7f 357 SUPERFAMILY SSF103088 220 345 1.7E-35 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 PIRSF PIRSF003059 1 561 7.8E-196 T 14-09-2016 IPR016377 Sucrose phosphorylase GO:0005985|GO:0009018 KEGG: 00500+2.4.1.7|MetaCyc: PWY-5384 PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 Pfam PF00128 Alpha amylase, catalytic domain 83 337 3.2E-18 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 Gene3D G3DSA:3.90.400.10 133 201 2.4E-22 T 14-09-2016 PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 PANTHER PTHR10357 388 542 4.9E-151 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 SUPERFAMILY SSF51445 43 356 4.22E-79 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 SUPERFAMILY SSF51445 396 530 4.22E-79 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 PANTHER PTHR10357:SF132 78 339 4.9E-151 T 14-09-2016 PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 Gene3D G3DSA:3.20.20.80 208 480 2.2E-100 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 Gene3D G3DSA:3.20.20.80 45 132 2.2E-100 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 PANTHER PTHR10357:SF132 388 542 4.9E-151 T 14-09-2016 PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 PANTHER PTHR10357 78 339 4.9E-151 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 SMART SM00642 65 479 1.1E-6 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS16165 3e7bd11e515a33302f25167646da8513 561 Gene3D G3DSA:2.60.40.1180 496 561 3.3E-12 T 14-09-2016 IPR013780 Glycosyl hydrolase, all-beta PAJ_RS12515 c893d4de069fb8efa14be43165a7e1dc 319 SUPERFAMILY SSF47240 7 319 1.4E-100 T 14-09-2016 IPR009078 Ferritin-like superfamily PAJ_RS12515 c893d4de069fb8efa14be43165a7e1dc 319 Pfam PF00268 Ribonucleotide reductase, small chain 9 280 7.5E-83 T 14-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 PAJ_RS12515 c893d4de069fb8efa14be43165a7e1dc 319 Gene3D G3DSA:1.10.620.20 7 280 3.5E-89 T 14-09-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 PAJ_RS12515 c893d4de069fb8efa14be43165a7e1dc 319 PIRSF PIRSF000355 1 316 1.3E-76 T 14-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 PAJ_RS12515 c893d4de069fb8efa14be43165a7e1dc 319 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 7 319 7.1E-143 T 14-09-2016 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS12515 c893d4de069fb8efa14be43165a7e1dc 319 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 97 113 - T 14-09-2016 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS12515 c893d4de069fb8efa14be43165a7e1dc 319 PANTHER PTHR23409 1 319 2.5E-103 T 14-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 PAJ_RS19185 a18aa4c21ca3f268c5d31c6dcd847ed1 122 SUPERFAMILY SSF46689 57 109 2.95E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19185 a18aa4c21ca3f268c5d31c6dcd847ed1 122 Gene3D G3DSA:1.10.10.60 1 57 1.7E-23 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19185 a18aa4c21ca3f268c5d31c6dcd847ed1 122 SUPERFAMILY SSF46689 5 56 7.9E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19185 a18aa4c21ca3f268c5d31c6dcd847ed1 122 PANTHER PTHR11019 4 112 3.7E-42 T 14-09-2016 PAJ_RS19185 a18aa4c21ca3f268c5d31c6dcd847ed1 122 PANTHER PTHR11019:SF118 4 112 3.7E-42 T 14-09-2016 PAJ_RS19185 a18aa4c21ca3f268c5d31c6dcd847ed1 122 SMART SM00342 21 104 3.4E-29 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS19185 a18aa4c21ca3f268c5d31c6dcd847ed1 122 Pfam PF12833 Helix-turn-helix domain 27 106 6.6E-21 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS19185 a18aa4c21ca3f268c5d31c6dcd847ed1 122 Gene3D G3DSA:1.10.10.60 58 112 9.3E-18 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS02960 8e0ebe424ba61f2159ee160c040141ba 251 PANTHER PTHR10108:SF855 12 175 2.4E-47 T 14-09-2016 PAJ_RS02960 8e0ebe424ba61f2159ee160c040141ba 251 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 13 249 7.1E-69 T 14-09-2016 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519|UniPathway: UPA00078 PAJ_RS02960 8e0ebe424ba61f2159ee160c040141ba 251 Gene3D G3DSA:3.40.50.150 10 200 7.1E-42 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS02960 8e0ebe424ba61f2159ee160c040141ba 251 PANTHER PTHR10108 12 175 2.4E-47 T 14-09-2016 PAJ_RS02960 8e0ebe424ba61f2159ee160c040141ba 251 SUPERFAMILY SSF53335 10 242 1.21E-42 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS02960 8e0ebe424ba61f2159ee160c040141ba 251 Pfam PF08241 Methyltransferase domain 48 139 9.5E-26 T 14-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 PAJ_RS02960 8e0ebe424ba61f2159ee160c040141ba 251 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 5 251 29.131 T 14-09-2016 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519|UniPathway: UPA00078 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 467 34.458 T 14-09-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 466 2.5E-186 T 14-09-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 377 445 4.2E-32 T 14-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 166 186 1.7E-54 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 198 212 1.7E-54 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 230 244 1.7E-54 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 264 291 1.7E-54 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 426 445 1.7E-54 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 PANTHER PTHR30050:SF2 1 100 1.1E-245 T 14-09-2016 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 ProSitePatterns PS01008 DnaA protein signature. 426 445 - T 14-09-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 SMART SM00382 165 367 3.7E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 PANTHER PTHR30050 131 468 1.1E-245 T 14-09-2016 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 Gene3D G3DSA:1.10.1750.10 367 467 2.6E-42 T 14-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 PANTHER PTHR30050 1 100 1.1E-245 T 14-09-2016 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 SMART SM00760 376 445 1.3E-43 T 14-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 PANTHER PTHR30050:SF2 131 468 1.1E-245 T 14-09-2016 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 SUPERFAMILY SSF52540 136 344 8.99E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 SUPERFAMILY SSF48295 364 467 1.33E-37 T 14-09-2016 IPR010921 Trp repressor/replication initiator GO:0043565 PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 Pfam PF00308 Bacterial dnaA protein 134 350 1.5E-98 T 14-09-2016 IPR013317 Chromosomal replication initiator protein DnaA PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 Gene3D G3DSA:3.40.50.300 124 297 1.3E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 Pfam PF11638 DnaA N-terminal domain 4 64 7.0E-20 T 14-09-2016 IPR024633 DnaA N-terminal domain PAJ_RS17965 bddcd8d39f41c701bc13f928e38f9918 468 Gene3D G3DSA:1.10.8.60 299 366 5.6E-30 T 14-09-2016 PAJ_RS04400 9e80d1a01554860d030159926531aff1 347 SUPERFAMILY SSF51556 6 347 1.78E-147 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS04400 9e80d1a01554860d030159926531aff1 347 PIRSF PIRSF001237 4 347 8.0E-142 T 14-09-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS04400 9e80d1a01554860d030159926531aff1 347 ProSitePatterns PS00483 Dihydroorotase signature 2. 249 260 - T 14-09-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS04400 9e80d1a01554860d030159926531aff1 347 PANTHER PTHR11647:SF59 1 328 4.5E-152 T 14-09-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS04400 9e80d1a01554860d030159926531aff1 347 PANTHER PTHR11647 1 328 4.5E-152 T 14-09-2016 PAJ_RS04400 9e80d1a01554860d030159926531aff1 347 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 347 8.8E-148 T 14-09-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS04400 9e80d1a01554860d030159926531aff1 347 Pfam PF01979 Amidohydrolase family 15 314 3.9E-17 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 PAJ_RS04400 9e80d1a01554860d030159926531aff1 347 Hamap MF_00219 Dihydroorotase [pyrC]. 6 347 53.637 T 14-09-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS04400 9e80d1a01554860d030159926531aff1 347 Gene3D G3DSA:3.20.20.140 6 346 6.1E-133 T 14-09-2016 PAJ_RS11500 8518c3f7e808e8ec7f028ec57550831b 90 SUPERFAMILY SSF159871 6 90 2.49E-23 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS11500 8518c3f7e808e8ec7f028ec57550831b 90 PANTHER PTHR34156 2 90 3.8E-22 T 14-09-2016 PAJ_RS11500 8518c3f7e808e8ec7f028ec57550831b 90 Pfam PF07338 Protein of unknown function (DUF1471) 34 90 3.4E-20 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS11500 8518c3f7e808e8ec7f028ec57550831b 90 Gene3D G3DSA:3.30.1660.10 18 90 2.5E-20 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 SUPERFAMILY SSF57783 60 100 1.05E-12 T 14-09-2016 PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 Gene3D G3DSA:3.30.65.10 14 48 1.7E-13 T 14-09-2016 PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 Gene3D G3DSA:3.30.65.10 60 97 4.0E-13 T 14-09-2016 PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 Gene3D G3DSA:3.30.65.10 102 136 3.8E-4 T 14-09-2016 PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 PANTHER PTHR11390 10 177 3.0E-86 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 SUPERFAMILY SSF57783 13 48 3.23E-12 T 14-09-2016 PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 63 98 1.1E-16 T 14-09-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 105 141 3.6E-14 T 14-09-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 15 47 9.5E-15 T 14-09-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 145 166 0.48 T 14-09-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 PAJ_RS15675 b685b26db142e53a12ef3f80be6995d7 181 PANTHER PTHR11390:SF26 10 177 3.0E-86 T 14-09-2016 PAJ_RS19940 b94cfd0e6311ba117beeeadaa4af9040 336 PANTHER PTHR30137 1 336 6.3E-146 T 14-09-2016 PAJ_RS19940 b94cfd0e6311ba117beeeadaa4af9040 336 Gene3D G3DSA:3.20.20.30 8 329 4.5E-87 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS19940 b94cfd0e6311ba117beeeadaa4af9040 336 PANTHER PTHR30137:SF2 1 336 6.3E-146 T 14-09-2016 PAJ_RS19940 b94cfd0e6311ba117beeeadaa4af9040 336 Pfam PF00296 Luciferase-like monooxygenase 24 306 3.8E-32 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS19940 b94cfd0e6311ba117beeeadaa4af9040 336 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 331 1.3E-131 T 14-09-2016 IPR019949 Luciferase family oxidoreductase, group 1 PAJ_RS19940 b94cfd0e6311ba117beeeadaa4af9040 336 SUPERFAMILY SSF51679 8 331 1.18E-80 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS04465 c5632052bdd90f5bde08ebd71f6ef20d 415 Pfam PF00460 Flagella basal body rod protein 4 33 5.4E-10 T 14-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PAJ_RS04465 c5632052bdd90f5bde08ebd71f6ef20d 415 SUPERFAMILY SSF117143 73 376 3.27E-77 T 14-09-2016 PAJ_RS04465 c5632052bdd90f5bde08ebd71f6ef20d 415 PANTHER PTHR30435 1 117 5.5E-95 T 14-09-2016 PAJ_RS04465 c5632052bdd90f5bde08ebd71f6ef20d 415 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 14-09-2016 IPR019776 Flagellar basal body rod protein, conserved site PAJ_RS04465 c5632052bdd90f5bde08ebd71f6ef20d 415 PANTHER PTHR30435 293 415 5.5E-95 T 14-09-2016 PAJ_RS04465 c5632052bdd90f5bde08ebd71f6ef20d 415 PANTHER PTHR30435:SF1 293 415 5.5E-95 T 14-09-2016 PAJ_RS04465 c5632052bdd90f5bde08ebd71f6ef20d 415 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 337 414 6.2E-21 T 14-09-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain PAJ_RS04465 c5632052bdd90f5bde08ebd71f6ef20d 415 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 397 6.2E-94 T 14-09-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G PAJ_RS04465 c5632052bdd90f5bde08ebd71f6ef20d 415 PANTHER PTHR30435:SF1 1 117 5.5E-95 T 14-09-2016 PAJ_RS04465 c5632052bdd90f5bde08ebd71f6ef20d 415 Pfam PF07559 Flagellar basal body protein FlaE 173 296 4.9E-17 T 14-09-2016 IPR011491 Flagellar hook protein FlgE PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 Gene3D G3DSA:1.10.10.10 17 100 1.9E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 PANTHER PTHR30537 13 300 4.1E-92 T 14-09-2016 PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 Gene3D G3DSA:3.40.190.10 109 182 3.3E-13 T 14-09-2016 PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 80 6.7E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 Gene3D G3DSA:3.40.190.10 183 272 6.6E-25 T 14-09-2016 PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 47 4.7E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 57 4.7E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 57 68 4.7E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 SUPERFAMILY SSF46785 18 100 9.1E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 PANTHER PTHR30537:SF16 13 300 4.1E-92 T 14-09-2016 PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 Pfam PF03466 LysR substrate binding domain 109 300 2.3E-14 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS08235 cc6ffb1d8b02af4601dce82866d1d064 305 SUPERFAMILY SSF53850 109 302 4.16E-21 T 14-09-2016 PAJ_RS01050 d334cfdb7e54ca3ac14b1f02c7e14f61 111 PANTHER PTHR10395 1 111 1.4E-35 T 14-09-2016 PAJ_RS01050 d334cfdb7e54ca3ac14b1f02c7e14f61 111 SUPERFAMILY SSF49472 1 111 3.27E-34 T 14-09-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PAJ_RS01050 d334cfdb7e54ca3ac14b1f02c7e14f61 111 PRINTS PR00189 Transthyretin signature 35 60 1.7E-7 T 14-09-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase PAJ_RS01050 d334cfdb7e54ca3ac14b1f02c7e14f61 111 PRINTS PR00189 Transthyretin signature 89 111 1.7E-7 T 14-09-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase PAJ_RS01050 d334cfdb7e54ca3ac14b1f02c7e14f61 111 PRINTS PR00189 Transthyretin signature 3 23 1.7E-7 T 14-09-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase PAJ_RS01050 d334cfdb7e54ca3ac14b1f02c7e14f61 111 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 2 111 1.5E-33 T 14-09-2016 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394 PAJ_RS01050 d334cfdb7e54ca3ac14b1f02c7e14f61 111 PANTHER PTHR10395:SF7 1 111 1.4E-35 T 14-09-2016 PAJ_RS01050 d334cfdb7e54ca3ac14b1f02c7e14f61 111 Pfam PF00576 HIUase/Transthyretin family 4 110 1.4E-30 T 14-09-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PAJ_RS01050 d334cfdb7e54ca3ac14b1f02c7e14f61 111 Gene3D G3DSA:2.60.40.180 2 111 8.5E-35 T 14-09-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PAJ_RS19920 5ddec27c0990bed8442403661b02cf6d 89 Pfam PF00312 Ribosomal protein S15 8 88 4.9E-37 T 14-09-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19920 5ddec27c0990bed8442403661b02cf6d 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 14-09-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19920 5ddec27c0990bed8442403661b02cf6d 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 3.0E-35 T 14-09-2016 PAJ_RS19920 5ddec27c0990bed8442403661b02cf6d 89 PANTHER PTHR23321 1 89 1.7E-46 T 14-09-2016 PAJ_RS19920 5ddec27c0990bed8442403661b02cf6d 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.207 T 14-09-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 PAJ_RS19920 5ddec27c0990bed8442403661b02cf6d 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 8.3E-39 T 14-09-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 PAJ_RS19920 5ddec27c0990bed8442403661b02cf6d 89 SUPERFAMILY SSF47060 3 89 1.71E-34 T 14-09-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 PAJ_RS19920 5ddec27c0990bed8442403661b02cf6d 89 Gene3D G3DSA:1.10.287.10 3 89 1.4E-38 T 14-09-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 PAJ_RS19920 5ddec27c0990bed8442403661b02cf6d 89 SMART SM01387 8 88 1.7E-51 T 14-09-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PANTHER PTHR34501:SF4 4 359 5.1E-153 T 14-09-2016 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 Pfam PF00267 Gram-negative porin 29 359 6.0E-104 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 Gene3D G3DSA:2.40.160.10 24 359 2.3E-82 T 14-09-2016 IPR023614 Porin domain PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PANTHER PTHR34501 4 359 5.1E-153 T 14-09-2016 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 157 168 4.8E-13 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 187 199 4.8E-13 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 311 328 4.8E-13 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 100 110 4.8E-13 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 54 65 4.8E-13 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 24 40 1.3E-50 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 155 177 1.3E-50 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 53 71 1.3E-50 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 100 122 1.3E-50 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 232 249 1.3E-50 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 262 281 1.3E-50 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS16640 1fc4a721348ad858bcac3b83929d16c7 359 SUPERFAMILY SSF56935 24 359 2.78E-66 T 14-09-2016 PAJ_RS05475 eb1383b7d05c809c3daaa5414ffb7ea2 384 SUPERFAMILY SSF55073 225 374 8.63E-40 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS05475 eb1383b7d05c809c3daaa5414ffb7ea2 384 Pfam PF00990 Diguanylate cyclase, GGDEF domain 221 372 8.2E-36 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS05475 eb1383b7d05c809c3daaa5414ffb7ea2 384 PANTHER PTHR10799 127 374 1.1E-22 T 14-09-2016 PAJ_RS05475 eb1383b7d05c809c3daaa5414ffb7ea2 384 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 217 374 1.1E-37 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS05475 eb1383b7d05c809c3daaa5414ffb7ea2 384 SMART SM00267 209 376 1.2E-42 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS05475 eb1383b7d05c809c3daaa5414ffb7ea2 384 Gene3D G3DSA:3.30.70.270 222 374 2.6E-43 T 14-09-2016 PAJ_RS05475 eb1383b7d05c809c3daaa5414ffb7ea2 384 PANTHER PTHR10799:SF710 127 374 1.1E-22 T 14-09-2016 PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 Pfam PF13098 Thioredoxin-like domain 464 559 2.2E-8 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 170 375 9.4E-20 T 14-09-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 ProSitePatterns PS00194 Thioredoxin family active site. 471 489 - T 14-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 SUPERFAMILY SSF52833 449 561 1.15E-22 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 Pfam PF11412 Disulphide bond corrector protein DsbC 32 142 1.5E-32 T 14-09-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 PANTHER PTHR32234:SF0 1 564 6.4E-216 T 14-09-2016 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 5 563 38.81 T 14-09-2016 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 SUPERFAMILY SSF74863 31 144 4.84E-39 T 14-09-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 PANTHER PTHR32234 1 564 6.4E-216 T 14-09-2016 PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 Gene3D G3DSA:2.60.40.1250 28 146 1.0E-43 T 14-09-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PAJ_RS19595 0b088039e4cebef020b6c09dfd0399fa 564 Gene3D G3DSA:3.40.30.10 451 562 5.3E-30 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS20445 5a428995f844b24ac0119ba8a7d3688b 140 PANTHER PTHR31793:SF9 12 136 6.0E-32 T 14-09-2016 PAJ_RS20445 5a428995f844b24ac0119ba8a7d3688b 140 PIRSF PIRSF003230 3 136 9.4E-23 T 14-09-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 PAJ_RS20445 5a428995f844b24ac0119ba8a7d3688b 140 SUPERFAMILY SSF54637 7 136 1.96E-33 T 14-09-2016 IPR029069 HotDog domain PAJ_RS20445 5a428995f844b24ac0119ba8a7d3688b 140 PANTHER PTHR31793 12 136 6.0E-32 T 14-09-2016 PAJ_RS20445 5a428995f844b24ac0119ba8a7d3688b 140 Pfam PF13279 Thioesterase-like superfamily 17 121 8.6E-14 T 14-09-2016 PAJ_RS20445 5a428995f844b24ac0119ba8a7d3688b 140 Gene3D G3DSA:3.10.129.10 8 128 2.1E-36 T 14-09-2016 IPR029069 HotDog domain PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 PANTHER PTHR21262:SF0 3 702 0.0 T 14-09-2016 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 PANTHER PTHR21262 3 702 0.0 T 14-09-2016 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 Gene3D G3DSA:3.30.460.10 178 324 8.7E-48 T 14-09-2016 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 Pfam PF04607 Region found in RelA / SpoT proteins 235 344 4.7E-36 T 14-09-2016 IPR007685 RelA/SpoT GO:0015969 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 699 1.0E-285 T 14-09-2016 IPR004811 RelA/SpoT family GO:0015969 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 Pfam PF13328 HD domain 29 175 2.5E-52 T 14-09-2016 IPR003607 HD/PDEase domain PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 Pfam PF02824 TGS domain 388 447 5.3E-21 T 14-09-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 SUPERFAMILY SSF81271 375 447 7.19E-21 T 14-09-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 SUPERFAMILY SSF81301 180 392 9.16E-62 T 14-09-2016 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 SMART SM00954 235 345 2.8E-63 T 14-09-2016 IPR007685 RelA/SpoT GO:0015969 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 SUPERFAMILY SSF55021 626 699 4.04E-6 T 14-09-2016 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 Gene3D G3DSA:3.10.20.30 387 448 6.9E-22 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 Gene3D G3DSA:3.30.70.260 626 697 3.2E-7 T 14-09-2016 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 SMART SM00471 41 153 4.1E-12 T 14-09-2016 IPR003607 HD/PDEase domain PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 SUPERFAMILY SSF109604 3 190 7.85E-74 T 14-09-2016 PAJ_RS17400 b2a614deeae4895bd4ae0ed3042017b2 702 Pfam PF13291 ACT domain 622 699 2.0E-17 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 PANTHER PTHR11544:SF53 1 69 1.1E-48 T 14-09-2016 PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 SUPERFAMILY SSF50249 3 68 3.26E-26 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 2.9E-33 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 SMART SM00357 5 69 9.3E-31 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 14-09-2016 IPR019844 Cold-shock conserved site PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 PRINTS PR00050 Cold shock protein signature 42 60 1.1E-18 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 PRINTS PR00050 Cold shock protein signature 27 36 1.1E-18 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 PRINTS PR00050 Cold shock protein signature 6 21 1.1E-18 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 PANTHER PTHR11544 1 69 1.1E-48 T 14-09-2016 PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 Gene3D G3DSA:2.40.50.140 4 67 2.7E-32 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS08125 2438b21594d2be1ec72263acfe9ba76f 69 PIRSF PIRSF002599 1 69 7.1E-26 T 14-09-2016 IPR012156 Cold shock, CspA GO:0003676 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 SUPERFAMILY SSF55979 245 366 3.38E-37 T 14-09-2016 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 SMART SM00480 17 362 9.6E-163 T 14-09-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 1.4E-111 T 14-09-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 2.1E-43 T 14-09-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 3.4E-39 T 14-09-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 PANTHER PTHR30478 2 366 8.4E-147 T 14-09-2016 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 1.8E-39 T 14-09-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 SUPERFAMILY SSF55979 124 244 1.01E-30 T 14-09-2016 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 Gene3D G3DSA:3.10.150.10 249 366 2.9E-38 T 14-09-2016 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 Gene3D G3DSA:3.10.150.10 1 121 2.8E-31 T 14-09-2016 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 SUPERFAMILY SSF55979 1 118 2.12E-26 T 14-09-2016 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 PIRSF PIRSF000804 1 366 1.2E-116 T 14-09-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17960 ae0be088f349cf8aa74f5e6e1f1ac6f3 366 Gene3D G3DSA:3.10.150.10 122 248 1.8E-38 T 14-09-2016 PAJ_RS18810 83a9fb02d7faa7b02668ec072a3cae97 601 PIRSF PIRSF000719 2 574 4.9E-249 T 14-09-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 PAJ_RS18810 83a9fb02d7faa7b02668ec072a3cae97 601 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 8 565 1.3E-235 T 14-09-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 PAJ_RS18810 83a9fb02d7faa7b02668ec072a3cae97 601 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 8 572 0.0 T 14-09-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 PAJ_RS18810 83a9fb02d7faa7b02668ec072a3cae97 601 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 1 569 40.102 T 14-09-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 PAJ_RS18810 83a9fb02d7faa7b02668ec072a3cae97 601 PANTHER PTHR39559 1 575 1.3E-198 T 14-09-2016 PAJ_RS14135 ba75826cf97f2c1dc5ce87f58ed0f2ed 409 Gene3D G3DSA:3.10.580.10 25 134 4.3E-7 T 14-09-2016 PAJ_RS14135 ba75826cf97f2c1dc5ce87f58ed0f2ed 409 PANTHER PTHR21021 142 403 6.7E-17 T 14-09-2016 PAJ_RS14135 ba75826cf97f2c1dc5ce87f58ed0f2ed 409 SUPERFAMILY SSF81606 190 372 4.71E-6 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS14135 ba75826cf97f2c1dc5ce87f58ed0f2ed 409 PANTHER PTHR21021:SF19 142 403 6.7E-17 T 14-09-2016 PAJ_RS14135 ba75826cf97f2c1dc5ce87f58ed0f2ed 409 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 204 405 5.4E-25 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS14135 ba75826cf97f2c1dc5ce87f58ed0f2ed 409 SMART SM00331 180 408 2.7E-9 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS14135 ba75826cf97f2c1dc5ce87f58ed0f2ed 409 Pfam PF00571 CBS domain 25 66 0.0017 T 14-09-2016 IPR000644 CBS domain PAJ_RS14135 ba75826cf97f2c1dc5ce87f58ed0f2ed 409 SUPERFAMILY SSF54631 24 141 5.52E-6 T 14-09-2016 PAJ_RS06125 4685befb67b91805964a03111c97ceeb 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 34 77 2.1E-11 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS06125 4685befb67b91805964a03111c97ceeb 213 SUPERFAMILY SSF48498 100 195 3.08E-16 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS06125 4685befb67b91805964a03111c97ceeb 213 PANTHER PTHR30055 16 193 4.4E-43 T 14-09-2016 PAJ_RS06125 4685befb67b91805964a03111c97ceeb 213 SUPERFAMILY SSF46689 20 102 3.69E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06125 4685befb67b91805964a03111c97ceeb 213 Gene3D G3DSA:1.10.10.60 20 84 5.1E-19 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06125 4685befb67b91805964a03111c97ceeb 213 ProSitePatterns PS01081 TetR-type HTH domain signature. 45 75 - T 14-09-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PAJ_RS06125 4685befb67b91805964a03111c97ceeb 213 Gene3D G3DSA:1.10.357.10 90 213 2.0E-16 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS06125 4685befb67b91805964a03111c97ceeb 213 PANTHER PTHR30055:SF79 16 193 4.4E-43 T 14-09-2016 PAJ_RS13260 bcf270ff1d4d7ff6f53c86ba509a24f0 237 Pfam PF10411 Disulfide bond isomerase protein N-terminus 30 76 1.3E-13 T 14-09-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PAJ_RS13260 bcf270ff1d4d7ff6f53c86ba509a24f0 237 Gene3D G3DSA:3.10.450.70 22 82 9.7E-25 T 14-09-2016 IPR009094 Disulphide bond isomerase, DsbC, N-terminal PAJ_RS13260 bcf270ff1d4d7ff6f53c86ba509a24f0 237 SUPERFAMILY SSF54423 22 80 5.36E-16 T 14-09-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PAJ_RS13260 bcf270ff1d4d7ff6f53c86ba509a24f0 237 ProSitePatterns PS00194 Thioredoxin family active site. 111 129 - T 14-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PAJ_RS13260 bcf270ff1d4d7ff6f53c86ba509a24f0 237 PANTHER PTHR35272 5 237 9.1E-96 T 14-09-2016 PAJ_RS13260 bcf270ff1d4d7ff6f53c86ba509a24f0 237 SUPERFAMILY SSF52833 91 232 1.3E-35 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS13260 bcf270ff1d4d7ff6f53c86ba509a24f0 237 PANTHER PTHR35272:SF3 5 237 9.1E-96 T 14-09-2016 PAJ_RS13260 bcf270ff1d4d7ff6f53c86ba509a24f0 237 Pfam PF13098 Thioredoxin-like domain 105 230 4.9E-26 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS13260 bcf270ff1d4d7ff6f53c86ba509a24f0 237 Gene3D G3DSA:3.40.30.10 99 233 1.6E-43 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS17215 1fd3775daf1560d725eb78aa2efd8da1 352 PANTHER PTHR30160:SF7 1 352 1.3E-107 T 14-09-2016 PAJ_RS17215 1fd3775daf1560d725eb78aa2efd8da1 352 Gene3D G3DSA:3.40.50.2000 1 144 2.8E-57 T 14-09-2016 PAJ_RS17215 1fd3775daf1560d725eb78aa2efd8da1 352 PANTHER PTHR30160 1 352 1.3E-107 T 14-09-2016 PAJ_RS17215 1fd3775daf1560d725eb78aa2efd8da1 352 Gene3D G3DSA:3.40.50.2000 164 344 2.7E-53 T 14-09-2016 PAJ_RS17215 1fd3775daf1560d725eb78aa2efd8da1 352 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 342 4.1E-160 T 14-09-2016 IPR011910 Lipopolysaccharide heptosyltransferase II GO:0009103|GO:0016757 KEGG: 00231+2.-.-.-|UniPathway: UPA00958 PAJ_RS17215 1fd3775daf1560d725eb78aa2efd8da1 352 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 321 4.3E-81 T 14-09-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 PAJ_RS17215 1fd3775daf1560d725eb78aa2efd8da1 352 SUPERFAMILY SSF53756 1 344 1.02E-96 T 14-09-2016 PAJ_RS04830 108ededc3d7fdddb061504d5210caed6 428 SUPERFAMILY SSF103473 9 420 1.44E-62 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS04830 108ededc3d7fdddb061504d5210caed6 428 Pfam PF00083 Sugar (and other) transporter 19 228 9.0E-26 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS04830 108ededc3d7fdddb061504d5210caed6 428 Gene3D G3DSA:1.20.1250.20 236 422 1.3E-17 T 14-09-2016 PAJ_RS04830 108ededc3d7fdddb061504d5210caed6 428 Gene3D G3DSA:1.20.1250.20 12 222 2.6E-24 T 14-09-2016 PAJ_RS04830 108ededc3d7fdddb061504d5210caed6 428 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS04830 108ededc3d7fdddb061504d5210caed6 428 PANTHER PTHR23508 12 418 4.8E-114 T 14-09-2016 PAJ_RS04830 108ededc3d7fdddb061504d5210caed6 428 Pfam PF07690 Major Facilitator Superfamily 253 414 7.9E-11 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS04830 108ededc3d7fdddb061504d5210caed6 428 ProSitePatterns PS00216 Sugar transport proteins signature 1. 292 309 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 SMART SM00922 182 282 2.8E-17 T 14-09-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 SUPERFAMILY SSF51604 136 412 1.08E-82 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 TIGRFAM TIGR03247 glucar-dehydr: glucarate dehydratase 3 443 2.3E-265 T 14-09-2016 IPR017653 Glucarate dehydratase GO:0000287|GO:0008872|GO:0019394 KEGG: 00053+4.2.1.40|MetaCyc: PWY-6499|UniPathway: UPA00564 PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 Gene3D G3DSA:3.20.20.120 116 395 6.4E-102 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 SUPERFAMILY SSF54826 4 134 3.53E-29 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 PANTHER PTHR13794 4 149 1.7E-297 T 14-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 PANTHER PTHR13794 170 428 1.7E-297 T 14-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 Pfam PF13378 Enolase C-terminal domain-like 186 402 7.7E-38 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 PANTHER PTHR13794:SF47 4 149 1.7E-297 T 14-09-2016 PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 PANTHER PTHR13794:SF47 170 428 1.7E-297 T 14-09-2016 PAJ_RS13020 b8f12790cdbeda89c36658f14518e8d7 443 Gene3D G3DSA:3.30.390.10 6 115 1.3E-8 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS18880 2e69ff3aa127a11116449bc977dcc27b 541 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 67 520 6.5E-125 T 14-09-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 PAJ_RS18880 2e69ff3aa127a11116449bc977dcc27b 541 Gene3D G3DSA:1.20.58.220 327 420 7.9E-7 T 14-09-2016 PAJ_RS18880 2e69ff3aa127a11116449bc977dcc27b 541 PANTHER PTHR10010 1 446 2.1E-44 T 14-09-2016 PAJ_RS18880 2e69ff3aa127a11116449bc977dcc27b 541 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 307 2.8E-114 T 14-09-2016 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 PAJ_RS18880 2e69ff3aa127a11116449bc977dcc27b 541 PANTHER PTHR10010:SF26 1 446 2.1E-44 T 14-09-2016 PAJ_RS18880 2e69ff3aa127a11116449bc977dcc27b 541 SUPERFAMILY SSF109755 320 531 1.15E-26 T 14-09-2016 PAJ_RS18880 2e69ff3aa127a11116449bc977dcc27b 541 Pfam PF02690 Na+/Pi-cotransporter 13 147 1.7E-35 T 14-09-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 PAJ_RS18880 2e69ff3aa127a11116449bc977dcc27b 541 Pfam PF02690 Na+/Pi-cotransporter 159 251 4.1E-9 T 14-09-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 PAJ_RS18880 2e69ff3aa127a11116449bc977dcc27b 541 Pfam PF01895 PhoU domain 340 422 1.2E-6 T 14-09-2016 IPR026022 PhoU domain PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 Pfam PF00183 Hsp90 protein 214 623 2.2E-127 T 14-09-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 27 36 - T 14-09-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 PANTHER PTHR11528:SF44 7 623 0.0 T 14-09-2016 PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 SUPERFAMILY SSF54211 230 485 3.19E-101 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 PANTHER PTHR11528 7 623 0.0 T 14-09-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 184 5.8E-15 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 Hamap MF_00505 Chaperone protein HtpG [htpG]. 4 623 33.115 T 14-09-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 SMART SM00387 29 186 1.6E-10 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 SUPERFAMILY SSF110942 510 623 2.22E-36 T 14-09-2016 PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 Gene3D G3DSA:3.30.565.10 7 238 6.3E-82 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 PRINTS PR00775 90kDa heat shock protein signature 77 94 4.5E-62 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 PRINTS PR00775 90kDa heat shock protein signature 95 112 4.5E-62 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 PRINTS PR00775 90kDa heat shock protein signature 174 191 4.5E-62 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 PRINTS PR00775 90kDa heat shock protein signature 7 27 4.5E-62 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 PRINTS PR00775 90kDa heat shock protein signature 28 50 4.5E-62 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 PRINTS PR00775 90kDa heat shock protein signature 192 210 4.5E-62 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 PRINTS PR00775 90kDa heat shock protein signature 122 144 4.5E-62 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 PIRSF PIRSF002583 2 624 1.8E-218 T 14-09-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 PAJ_RS01890 e3143c3592593224ed3a7556415beba6 624 SUPERFAMILY SSF55874 6 215 7.47E-66 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS13415 e00607a3d3aec5c858fe26e42c815377 251 PANTHER PTHR22726 1 249 2.7E-142 T 14-09-2016 PAJ_RS13415 e00607a3d3aec5c858fe26e42c815377 251 Gene3D G3DSA:3.30.2010.10 64 146 1.2E-23 T 14-09-2016 PAJ_RS13415 e00607a3d3aec5c858fe26e42c815377 251 Pfam PF01435 Peptidase family M48 71 245 3.6E-27 T 14-09-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 PAJ_RS13415 e00607a3d3aec5c858fe26e42c815377 251 PANTHER PTHR22726:SF4 1 249 2.7E-142 T 14-09-2016 PAJ_RS04615 bd03afa0e2f52fd09b8c6cce04110e1b 346 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 8 337 47.973 T 14-09-2016 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|UniPathway: UPA00544 PAJ_RS04615 bd03afa0e2f52fd09b8c6cce04110e1b 346 PANTHER PTHR30480:SF7 9 327 1.7E-138 T 14-09-2016 PAJ_RS04615 bd03afa0e2f52fd09b8c6cce04110e1b 346 Gene3D G3DSA:3.20.20.300 8 331 1.9E-98 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PAJ_RS04615 bd03afa0e2f52fd09b8c6cce04110e1b 346 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 239 256 - T 14-09-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 PAJ_RS04615 bd03afa0e2f52fd09b8c6cce04110e1b 346 PANTHER PTHR30480 9 327 1.7E-138 T 14-09-2016 PAJ_RS04615 bd03afa0e2f52fd09b8c6cce04110e1b 346 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 15 302 3.9E-99 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PAJ_RS04615 bd03afa0e2f52fd09b8c6cce04110e1b 346 SUPERFAMILY SSF51445 7 323 6.42E-88 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS10830 c44e0cb32909959a704a6eb1b830dce0 223 SUPERFAMILY SSF52172 1 132 3.56E-38 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS10830 c44e0cb32909959a704a6eb1b830dce0 223 PANTHER PTHR26402:SF518 1 218 6.5E-71 T 14-09-2016 PAJ_RS10830 c44e0cb32909959a704a6eb1b830dce0 223 Pfam PF00072 Response regulator receiver domain 4 112 1.1E-27 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS10830 c44e0cb32909959a704a6eb1b830dce0 223 SMART SM00862 144 217 1.8E-15 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS10830 c44e0cb32909959a704a6eb1b830dce0 223 Gene3D G3DSA:1.10.10.10 129 218 2.4E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10830 c44e0cb32909959a704a6eb1b830dce0 223 SUPERFAMILY SSF46894 118 218 5.32E-17 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS10830 c44e0cb32909959a704a6eb1b830dce0 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 217 9.2E-17 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS10830 c44e0cb32909959a704a6eb1b830dce0 223 SMART SM00448 1 112 3.9E-40 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS10830 c44e0cb32909959a704a6eb1b830dce0 223 PANTHER PTHR26402 1 218 6.5E-71 T 14-09-2016 PAJ_RS10830 c44e0cb32909959a704a6eb1b830dce0 223 Gene3D G3DSA:3.40.50.2300 1 126 7.8E-40 T 14-09-2016 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 SUPERFAMILY SSF54211 167 251 2.66E-32 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 Gene3D G3DSA:3.30.230.40 167 253 3.1E-38 T 14-09-2016 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 Gene3D G3DSA:3.30.230.40 258 355 3.9E-31 T 14-09-2016 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 162 6.4E-78 T 14-09-2016 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15|UniPathway: UPA00031|UniPathway: UPA00031 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 SUPERFAMILY SSF54211 252 342 3.29E-31 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 14-09-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 Pfam PF13242 HAD-hyrolase-like 103 146 3.4E-7 T 14-09-2016 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 319 331 - T 14-09-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 PANTHER PTHR23133 10 97 5.4E-179 T 14-09-2016 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 PANTHER PTHR23133 163 355 5.4E-179 T 14-09-2016 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 Gene3D G3DSA:3.40.50.1000 1 160 2.8E-46 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 PANTHER PTHR23133:SF2 10 97 5.4E-179 T 14-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 SUPERFAMILY SSF56784 1 158 1.87E-40 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 355 37.474 T 14-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 337 1.5E-63 T 14-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 145 1.3E-47 T 14-09-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 147 2.1E-27 T 14-09-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 355 57.153 T 14-09-2016 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15|UniPathway: UPA00031|UniPathway: UPA00031 PAJ_RS09800 96e69f864d779e985d7b682d8a4cc29a 355 PANTHER PTHR23133:SF2 163 355 5.4E-179 T 14-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 Gene3D G3DSA:3.40.190.10 181 263 5.1E-20 T 14-09-2016 PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 3.4E-18 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 SUPERFAMILY SSF53850 91 296 2.9E-33 T 14-09-2016 PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 SUPERFAMILY SSF46785 9 91 1.36E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 PANTHER PTHR30537 1 298 2.6E-84 T 14-09-2016 PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 5.4E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 5.4E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 5.4E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 PANTHER PTHR30537:SF5 1 298 2.6E-84 T 14-09-2016 PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 Gene3D G3DSA:1.10.10.10 8 90 1.8E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 Pfam PF03466 LysR substrate binding domain 91 294 2.6E-32 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS19190 b5b70273c57233ec59b84c11e0a92c38 298 Gene3D G3DSA:3.40.190.10 95 180 4.0E-15 T 14-09-2016 PAJ_RS00340 38b3c7c0741ab52824ac85f65ba134f4 279 PANTHER PTHR35851 5 273 5.8E-75 T 14-09-2016 PAJ_RS00340 38b3c7c0741ab52824ac85f65ba134f4 279 Pfam PF03799 Cell division protein FtsQ 131 248 4.3E-24 T 14-09-2016 IPR005548 Cell division protein FtsQ/DivIB PAJ_RS00340 38b3c7c0741ab52824ac85f65ba134f4 279 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 27 256 23.598 T 14-09-2016 IPR026579 Cell division protein FtsQ GO:0000917 PAJ_RS00340 38b3c7c0741ab52824ac85f65ba134f4 279 PANTHER PTHR35851:SF1 5 273 5.8E-75 T 14-09-2016 PAJ_RS00340 38b3c7c0741ab52824ac85f65ba134f4 279 Pfam PF08478 POTRA domain, FtsQ-type 58 126 2.1E-21 T 14-09-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type PAJ_RS05640 2ec8b7f50626e3374cd977a76b42ce0f 355 PANTHER PTHR32196:SF21 2 345 1.2E-112 T 14-09-2016 PAJ_RS05640 2ec8b7f50626e3374cd977a76b42ce0f 355 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 320 8.7E-43 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS05640 2ec8b7f50626e3374cd977a76b42ce0f 355 PANTHER PTHR32196 2 345 1.2E-112 T 14-09-2016 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 906 917 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 Gene3D G3DSA:3.40.309.10 894 1086 6.1E-47 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 SUPERFAMILY SSF81935 84 257 9.68E-65 T 14-09-2016 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 SUPERFAMILY SSF51730 258 613 4.71E-122 T 14-09-2016 IPR029041 FAD-linked oxidoreductase-like PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 606 1108 1.8E-242 T 14-09-2016 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 143 255 1.0E-45 T 14-09-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 SUPERFAMILY SSF53720 640 1106 4.58E-128 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 SUPERFAMILY SSF47598 3 44 1.33E-9 T 14-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 Pfam PF00171 Aldehyde dehydrogenase family 655 1101 1.5E-115 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 PANTHER PTHR11699:SF18 623 1104 9.4E-178 T 14-09-2016 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 Pfam PF01619 Proline dehydrogenase 266 565 9.4E-98 T 14-09-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 Gene3D G3DSA:3.40.605.10 653 893 1.3E-67 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 Gene3D G3DSA:1.10.2060.10 139 256 3.1E-54 T 14-09-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 Gene3D G3DSA:3.20.20.220 257 612 1.7E-119 T 14-09-2016 IPR029041 FAD-linked oxidoreductase-like PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 PIRSF PIRSF000197 70 1314 0.0 T 14-09-2016 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 Gene3D G3DSA:1.20.5.550 83 134 6.4E-23 T 14-09-2016 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 878 885 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS08655 ef9054709e3fb7d054a0656292659437 1314 PANTHER PTHR11699 623 1104 9.4E-178 T 14-09-2016 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 PANTHER PTHR10353:SF35 7 49 7.4E-242 T 14-09-2016 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 PRINTS PR00131 Glycosyl hydrolase family 1 signature 450 462 4.2E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 PRINTS PR00131 Glycosyl hydrolase family 1 signature 383 391 4.2E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 PRINTS PR00131 Glycosyl hydrolase family 1 signature 425 442 4.2E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 PRINTS PR00131 Glycosyl hydrolase family 1 signature 316 330 4.2E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 PRINTS PR00131 Glycosyl hydrolase family 1 signature 404 415 4.2E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 11 25 - T 14-09-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 Gene3D G3DSA:3.20.20.80 6 488 4.3E-147 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 PANTHER PTHR10353 74 490 7.4E-242 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 PANTHER PTHR10353 7 49 7.4E-242 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 PANTHER PTHR10353:SF35 74 490 7.4E-242 T 14-09-2016 PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 SUPERFAMILY SSF51445 72 486 9.56E-158 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 SUPERFAMILY SSF51445 5 43 9.56E-158 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS04980 604f84e99bbe258de39b90ab7b14ce5f 490 Pfam PF00232 Glycosyl hydrolase family 1 5 485 2.9E-130 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 PANTHER PTHR19376:SF32 1177 1262 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Gene3D G3DSA:2.40.50.100 1156 1209 1.5E-5 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 1.2E-26 T 14-09-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 15 1377 10.41 T 14-09-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 2.3E-90 T 14-09-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 PANTHER PTHR19376 1303 1372 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 PANTHER PTHR19376 1177 1262 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 13 742 32.265 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 PANTHER PTHR19376 963 1157 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 PANTHER PTHR19376 4 551 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 485 3.8E-27 T 14-09-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 393 1.2E-7 T 14-09-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 1.3E-18 T 14-09-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1315 6.9E-78 T 14-09-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 PANTHER PTHR19376 570 943 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 PANTHER PTHR19376:SF32 1303 1372 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 PANTHER PTHR19376:SF32 4 551 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 PANTHER PTHR19376:SF32 963 1157 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 SMART SM00663 235 514 1.1E-184 T 14-09-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Gene3D G3DSA:2.40.40.20 417 489 2.8E-37 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 Gene3D G3DSA:2.40.40.20 349 376 2.8E-37 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 PANTHER PTHR19376:SF32 570 943 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 SUPERFAMILY SSF64484 1133 1364 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 SUPERFAMILY SSF64484 16 944 0.0 T 14-09-2016 PAJ_RS18690 88bf941ce207ced30a932ab907dad022 1407 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 14-09-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 PANTHER PTHR10799:SF750 1 11 3.5E-31 T 14-09-2016 PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 Gene3D G3DSA:3.30.450.20 143 265 7.8E-11 T 14-09-2016 PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 PANTHER PTHR10799 390 513 3.5E-31 T 14-09-2016 PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 PANTHER PTHR10799:SF750 390 513 3.5E-31 T 14-09-2016 PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 Gene3D G3DSA:3.30.70.270 364 516 2.0E-46 T 14-09-2016 PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 PANTHER PTHR10799 1 11 3.5E-31 T 14-09-2016 PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 SUPERFAMILY SSF55073 367 514 1.49E-42 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 SMART SM00267 351 514 2.0E-49 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 Pfam PF00990 Diguanylate cyclase, GGDEF domain 362 510 2.2E-40 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 359 513 4.0E-46 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 Pfam PF02743 Cache domain 39 263 8.6E-22 T 14-09-2016 IPR033479 Double Cache domain 1 PAJ_RS14900 ba9af3322a3aaef239ec28c620af47ee 525 SUPERFAMILY SSF103190 80 179 7.85E-5 T 14-09-2016 IPR029151 Periplasmic sensor domain-like PAJ_RS04800 f440b213c333d48b7b6fff5709bbf1eb 382 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 367 1.7E-83 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS04800 f440b213c333d48b7b6fff5709bbf1eb 382 Gene3D G3DSA:2.40.50.100 61 92 4.7E-27 T 14-09-2016 PAJ_RS04800 f440b213c333d48b7b6fff5709bbf1eb 382 Gene3D G3DSA:2.40.50.100 167 200 4.7E-27 T 14-09-2016 PAJ_RS04800 f440b213c333d48b7b6fff5709bbf1eb 382 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 58 285 8.1E-16 T 14-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PAJ_RS04800 f440b213c333d48b7b6fff5709bbf1eb 382 SUPERFAMILY SSF111369 46 292 1.19E-80 T 14-09-2016 PAJ_RS04800 f440b213c333d48b7b6fff5709bbf1eb 382 PANTHER PTHR30158 8 371 5.6E-146 T 14-09-2016 PAJ_RS04800 f440b213c333d48b7b6fff5709bbf1eb 382 PANTHER PTHR30158:SF3 8 371 5.6E-146 T 14-09-2016 PAJ_RS01075 5a066d85b1c114f4a6ef3ca030b436cf 227 Gene3D G3DSA:3.40.50.1000 1 219 5.0E-24 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS01075 5a066d85b1c114f4a6ef3ca030b436cf 227 TIGRFAM TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 2 221 5.0E-90 T 14-09-2016 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|UniPathway: UPA00904|UniPathway: UPA00904 PAJ_RS01075 5a066d85b1c114f4a6ef3ca030b436cf 227 PANTHER PTHR20371 2 223 1.6E-97 T 14-09-2016 PAJ_RS01075 5a066d85b1c114f4a6ef3ca030b436cf 227 SUPERFAMILY SSF56784 1 222 4.81E-60 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS01075 5a066d85b1c114f4a6ef3ca030b436cf 227 Hamap MF_01681 Enolase-phosphatase E1 [mtnC]. 1 222 41.924 T 14-09-2016 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|UniPathway: UPA00904|UniPathway: UPA00904 PAJ_RS01075 5a066d85b1c114f4a6ef3ca030b436cf 227 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 116 196 2.0E-7 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16660 fbf0b663e735468644d3bb4c3235c64e 402 PANTHER PTHR23501:SF79 15 399 4.3E-103 T 14-09-2016 PAJ_RS16660 fbf0b663e735468644d3bb4c3235c64e 402 Pfam PF07690 Major Facilitator Superfamily 25 328 8.7E-33 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS16660 fbf0b663e735468644d3bb4c3235c64e 402 SUPERFAMILY SSF103473 14 395 2.49E-51 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS16660 fbf0b663e735468644d3bb4c3235c64e 402 PANTHER PTHR23501 15 399 4.3E-103 T 14-09-2016 PAJ_RS16660 fbf0b663e735468644d3bb4c3235c64e 402 Gene3D G3DSA:1.20.1250.20 219 395 1.6E-13 T 14-09-2016 PAJ_RS16660 fbf0b663e735468644d3bb4c3235c64e 402 Gene3D G3DSA:1.20.1250.20 20 194 3.9E-19 T 14-09-2016 PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 PRINTS PR00394 RHS protein signature 1296 1315 3.3E-11 T 14-09-2016 IPR001826 RHS protein PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 PRINTS PR00394 RHS protein signature 1216 1236 3.3E-11 T 14-09-2016 IPR001826 RHS protein PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 PRINTS PR00394 RHS protein signature 1273 1293 3.3E-11 T 14-09-2016 IPR001826 RHS protein PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 SUPERFAMILY SSF69304 834 889 3.27E-5 T 14-09-2016 PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 SUPERFAMILY SSF69304 700 774 3.27E-5 T 14-09-2016 PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 PANTHER PTHR32305 179 757 1.6E-126 T 14-09-2016 PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 PANTHER PTHR32305 1067 1328 1.6E-126 T 14-09-2016 PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 PANTHER PTHR32305:SF6 179 757 1.6E-126 T 14-09-2016 PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 PANTHER PTHR32305:SF6 1067 1328 1.6E-126 T 14-09-2016 PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 Pfam PF05593 RHS Repeat 920 955 2.8E-5 T 14-09-2016 IPR031325 RHS repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 Pfam PF05593 RHS Repeat 590 626 2.9E-6 T 14-09-2016 IPR031325 RHS repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 Pfam PF05593 RHS Repeat 868 896 8.3E-5 T 14-09-2016 IPR031325 RHS repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 Pfam PF05593 RHS Repeat 696 733 1.8E-6 T 14-09-2016 IPR031325 RHS repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 835 858 3.5E-4 T 14-09-2016 IPR006530 YD repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 697 737 1.0E-5 T 14-09-2016 IPR006530 YD repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 780 809 5.8E-5 T 14-09-2016 IPR006530 YD repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 569 610 1.4E-7 T 14-09-2016 IPR006530 YD repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 595 629 2.0E-6 T 14-09-2016 IPR006530 YD repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 738 778 4.8E-4 T 14-09-2016 IPR006530 YD repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 868 895 0.0018 T 14-09-2016 IPR006530 YD repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 920 955 2.1E-4 T 14-09-2016 IPR006530 YD repeat PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 PANTHER PTHR32305:SF6 779 1048 1.6E-126 T 14-09-2016 PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 Pfam PF03527 RHS protein 1222 1258 7.9E-10 T 14-09-2016 IPR001826 RHS protein PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 Pfam PF05488 PAAR motif 177 218 5.5E-9 T 14-09-2016 IPR008727 PAAR motif PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 PANTHER PTHR32305 779 1048 1.6E-126 T 14-09-2016 PAJ_RS09135 0d5e290d24e57a55dae346236da25764 1500 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1250 1328 1.3E-25 T 14-09-2016 IPR022385 Rhs repeat-associated core GO:0097264 PAJ_RS16295 ea156d0507473e95c7e113e04a8a8216 247 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 14 240 3.7E-37 T 14-09-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 PAJ_RS16295 ea156d0507473e95c7e113e04a8a8216 247 PANTHER PTHR23344:SF20 3 242 6.0E-71 T 14-09-2016 PAJ_RS16295 ea156d0507473e95c7e113e04a8a8216 247 PANTHER PTHR23344 3 242 6.0E-71 T 14-09-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 PAJ_RS16295 ea156d0507473e95c7e113e04a8a8216 247 Gene3D G3DSA:3.20.20.190 3 241 2.7E-60 T 14-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 PAJ_RS16295 ea156d0507473e95c7e113e04a8a8216 247 SUPERFAMILY SSF51695 7 241 1.26E-59 T 14-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 PAJ_RS10355 4329f812b94ea6597cc4adeaddb152d8 584 Pfam PF00884 Sulfatase 260 498 4.5E-19 T 14-09-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PAJ_RS10355 4329f812b94ea6597cc4adeaddb152d8 584 SUPERFAMILY SSF53649 258 579 2.47E-41 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PAJ_RS10355 4329f812b94ea6597cc4adeaddb152d8 584 Pfam PF11893 Domain of unknown function (DUF3413) 6 251 2.2E-105 T 14-09-2016 IPR024588 Inner membrane protein YejM, N-terminal PAJ_RS10355 4329f812b94ea6597cc4adeaddb152d8 584 PANTHER PTHR10342:SF215 231 565 1.2E-100 T 14-09-2016 PAJ_RS10355 4329f812b94ea6597cc4adeaddb152d8 584 Gene3D G3DSA:3.40.720.10 260 518 4.1E-24 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PAJ_RS10355 4329f812b94ea6597cc4adeaddb152d8 584 PIRSF PIRSF004950 6 584 5.7E-201 T 14-09-2016 IPR012159 Inner membrane protein YejM PAJ_RS10355 4329f812b94ea6597cc4adeaddb152d8 584 PANTHER PTHR10342 231 565 1.2E-100 T 14-09-2016 PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 PANTHER PTHR11751 177 200 5.7E-13 T 14-09-2016 PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 PANTHER PTHR11751 16 81 5.7E-13 T 14-09-2016 PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 79 6.2E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 Pfam PF07729 FCD domain 184 307 1.1E-11 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 SUPERFAMILY SSF46785 15 91 1.2E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 SUPERFAMILY SSF48008 181 313 1.88E-13 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 Gene3D G3DSA:1.10.10.10 104 172 7.4E-7 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 Gene3D G3DSA:1.10.10.10 13 80 5.5E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 SMART SM00895 184 307 4.2E-8 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 SMART SM00345 21 79 4.3E-4 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 SUPERFAMILY SSF46785 123 178 4.18E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07040 3958d4a803f7e6df2ed232a131f17a6a 334 Gene3D G3DSA:1.20.120.530 177 317 3.9E-17 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 Pfam PF00204 DNA gyrase B 221 390 9.7E-59 T 14-09-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 730 791 3.0E-30 T 14-09-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 SMART SM00433 35 795 1.0E-276 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 802 0.0 T 14-09-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 14-09-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 SUPERFAMILY SSF56719 728 793 6.54E-86 T 14-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 SUPERFAMILY SSF56719 394 560 6.54E-86 T 14-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 Pfam PF01751 Toprim domain 419 531 6.1E-18 T 14-09-2016 IPR006171 Toprim domain PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 Gene3D G3DSA:3.30.230.10 220 392 4.4E-78 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 802 111.292 T 14-09-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 SUPERFAMILY SSF55874 4 220 1.18E-75 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 SMART SM00387 31 175 7.0E-30 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PANTHER PTHR10169 1 553 0.0 T 14-09-2016 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PANTHER PTHR10169 722 802 0.0 T 14-09-2016 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 SUPERFAMILY SSF54211 221 392 1.73E-61 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR00418 DNA topoisomerase II family signature 505 522 9.4E-71 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR00418 DNA topoisomerase II family signature 734 750 9.4E-71 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR00418 DNA topoisomerase II family signature 487 503 9.4E-71 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR00418 DNA topoisomerase II family signature 525 537 9.4E-71 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR00418 DNA topoisomerase II family signature 35 50 9.4E-71 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR00418 DNA topoisomerase II family signature 113 127 9.4E-71 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR00418 DNA topoisomerase II family signature 268 281 9.4E-71 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR00418 DNA topoisomerase II family signature 420 434 9.4E-71 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR00418 DNA topoisomerase II family signature 70 83 9.4E-71 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 Gene3D G3DSA:3.30.565.10 15 218 8.0E-91 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR01159 DNA gyrase subunit B signature 470 479 1.5E-79 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR01159 DNA gyrase subunit B signature 360 374 1.5E-79 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR01159 DNA gyrase subunit B signature 220 242 1.5E-79 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR01159 DNA gyrase subunit B signature 196 209 1.5E-79 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR01159 DNA gyrase subunit B signature 312 328 1.5E-79 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR01159 DNA gyrase subunit B signature 5 15 1.5E-79 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR01159 DNA gyrase subunit B signature 181 196 1.5E-79 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR01159 DNA gyrase subunit B signature 374 394 1.5E-79 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR01159 DNA gyrase subunit B signature 771 787 1.5E-79 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 PRINTS PR01159 DNA gyrase subunit B signature 755 767 1.5E-79 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 173 3.6E-24 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 Gene3D G3DSA:3.40.50.670 404 550 1.4E-101 T 14-09-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS17950 f986c20e6f2e2fd98f7a7030095651b0 802 Gene3D G3DSA:3.40.50.670 716 784 1.4E-101 T 14-09-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS03120 bf5ea716d679dd1e9d13021b27bac1ec 177 PANTHER PTHR10885 1 159 7.7E-44 T 14-09-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 PAJ_RS03120 bf5ea716d679dd1e9d13021b27bac1ec 177 PIRSF PIRSF018427 1 170 1.3E-47 T 14-09-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 PAJ_RS03120 bf5ea716d679dd1e9d13021b27bac1ec 177 SUPERFAMILY SSF55811 6 164 1.11E-41 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS03120 bf5ea716d679dd1e9d13021b27bac1ec 177 Pfam PF00293 NUDIX domain 30 159 3.0E-20 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS03120 bf5ea716d679dd1e9d13021b27bac1ec 177 Hamap MF_00202 Isopentenyl-diphosphate Delta-isomerase [idi]. 4 174 30.345 T 14-09-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 PAJ_RS03120 bf5ea716d679dd1e9d13021b27bac1ec 177 TIGRFAM TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase 6 161 1.1E-36 T 14-09-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 PAJ_RS03120 bf5ea716d679dd1e9d13021b27bac1ec 177 Gene3D G3DSA:3.90.79.10 5 163 6.5E-50 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 PRINTS PR00046 Major sigma-70 factor signature 221 232 1.0E-13 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 PRINTS PR00046 Major sigma-70 factor signature 206 221 1.0E-13 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 PRINTS PR00046 Major sigma-70 factor signature 43 56 1.0E-13 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 PRINTS PR00046 Major sigma-70 factor signature 67 75 1.0E-13 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 PRINTS PR00046 Major sigma-70 factor signature 189 201 1.0E-13 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 PANTHER PTHR30385:SF7 15 236 1.3E-67 T 14-09-2016 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 Pfam PF04545 Sigma-70, region 4 185 234 9.1E-18 T 14-09-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 236 8.2E-31 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 16 236 4.2E-84 T 14-09-2016 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 206 232 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 PANTHER PTHR30385 15 236 1.3E-67 T 14-09-2016 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 Pfam PF04542 Sigma-70 region 2 16 88 2.5E-16 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 43 56 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 239 62.824 T 14-09-2016 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 PIRSF PIRSF000770 3 240 4.5E-41 T 14-09-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 Gene3D G3DSA:1.10.10.10 174 237 4.4E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 Gene3D G3DSA:1.10.10.10 90 135 3.5E-7 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 Pfam PF04539 Sigma-70 region 3 97 166 1.6E-14 T 14-09-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 SUPERFAMILY SSF88659 161 237 2.99E-20 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 Gene3D G3DSA:1.10.601.10 11 80 1.1E-14 T 14-09-2016 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 SUPERFAMILY SSF88946 5 88 3.61E-23 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS08705 ce865d98cc3c289234f34796cacc915e 240 SUPERFAMILY SSF88659 90 156 1.26E-14 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 513 1.2E-54 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 SMART SM00283 267 514 4.3E-87 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 SMART SM00086 80 121 6.6E-4 T 14-09-2016 IPR001610 PAC motif PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 Pfam PF08447 PAS fold 31 114 1.8E-15 T 14-09-2016 IPR013655 PAS fold-3 GO:0005515 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 SUPERFAMILY SSF55785 21 114 2.09E-26 T 14-09-2016 IPR000014 PAS domain PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 PANTHER PTHR32089 188 514 1.2E-115 T 14-09-2016 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 PANTHER PTHR32089 48 168 1.2E-115 T 14-09-2016 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 17 114 4.2E-13 T 14-09-2016 IPR000014 PAS domain PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 PANTHER PTHR32089:SF64 188 514 1.2E-115 T 14-09-2016 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 PANTHER PTHR32089:SF64 48 168 1.2E-115 T 14-09-2016 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 Gene3D G3DSA:3.30.450.20 20 114 9.9E-24 T 14-09-2016 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 SUPERFAMILY SSF58104 249 514 9.81E-67 T 14-09-2016 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 Gene3D G3DSA:1.10.287.950 282 486 1.7E-55 T 14-09-2016 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 9.6E-48 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 9.6E-48 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 9.6E-48 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19115 b68cabfd5d31b9a86e92f67ee132f69a 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 9.6E-48 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19895 eac722af2bd64936509cbe0a959a41fb 150 SUPERFAMILY SSF74942 83 150 1.83E-16 T 14-09-2016 IPR028998 Ribosome maturation factor RimP, C-terminal PAJ_RS19895 eac722af2bd64936509cbe0a959a41fb 150 Pfam PF02576 Putative ribosome maturation factor RimP 12 146 1.3E-47 T 14-09-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 PAJ_RS19895 eac722af2bd64936509cbe0a959a41fb 150 Gene3D G3DSA:3.30.300.70 2 79 1.1E-32 T 14-09-2016 IPR028989 Ribosome maturation factor RimP, N-terminal PAJ_RS19895 eac722af2bd64936509cbe0a959a41fb 150 SUPERFAMILY SSF75420 3 82 6.02E-25 T 14-09-2016 IPR028989 Ribosome maturation factor RimP, N-terminal PAJ_RS19895 eac722af2bd64936509cbe0a959a41fb 150 PANTHER PTHR33867:SF1 1 150 2.9E-57 T 14-09-2016 PAJ_RS19895 eac722af2bd64936509cbe0a959a41fb 150 Gene3D G3DSA:2.30.30.180 87 147 4.5E-12 T 14-09-2016 IPR028998 Ribosome maturation factor RimP, C-terminal PAJ_RS19895 eac722af2bd64936509cbe0a959a41fb 150 PANTHER PTHR33867 1 150 2.9E-57 T 14-09-2016 PAJ_RS19895 eac722af2bd64936509cbe0a959a41fb 150 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 150 24.228 T 14-09-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 Gene3D G3DSA:1.10.579.10 287 472 2.3E-77 T 14-09-2016 PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 PRINTS PR00147 DNA photolyase signature 145 161 4.0E-29 T 14-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 PRINTS PR00147 DNA photolyase signature 384 398 4.0E-29 T 14-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 PRINTS PR00147 DNA photolyase signature 345 363 4.0E-29 T 14-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 PRINTS PR00147 DNA photolyase signature 325 341 4.0E-29 T 14-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 Gene3D G3DSA:3.40.50.620 2 149 2.5E-45 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 345 364 - T 14-09-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 SUPERFAMILY SSF48173 194 473 1.83E-108 T 14-09-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 SUPERFAMILY SSF52425 3 201 1.01E-54 T 14-09-2016 IPR006050 DNA photolyase, N-terminal PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 325 337 - T 14-09-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 PANTHER PTHR11455 1 473 5.6E-217 T 14-09-2016 PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 PANTHER PTHR11455:SF18 1 473 5.6E-217 T 14-09-2016 PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 Gene3D G3DSA:1.25.40.80 150 286 2.0E-46 T 14-09-2016 PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 Pfam PF00875 DNA photolyase 5 173 3.1E-45 T 14-09-2016 IPR006050 DNA photolyase, N-terminal PAJ_RS02655 d1e8e3691e37da472c2a53d63a76d228 475 Pfam PF03441 FAD binding domain of DNA photolyase 275 469 9.2E-83 T 14-09-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain PAJ_RS01905 17464d87133ce7a62c54b6854b7c95e7 565 Pfam PF02254 TrkA-N domain 422 535 7.2E-21 T 14-09-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 PAJ_RS01905 17464d87133ce7a62c54b6854b7c95e7 565 SUPERFAMILY SSF51735 420 548 1.53E-26 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS01905 17464d87133ce7a62c54b6854b7c95e7 565 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 4.1E-75 T 14-09-2016 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 PAJ_RS01905 17464d87133ce7a62c54b6854b7c95e7 565 Gene3D G3DSA:3.40.50.720 415 548 1.0E-34 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS01905 17464d87133ce7a62c54b6854b7c95e7 565 PANTHER PTHR16254 1 552 2.7E-300 T 14-09-2016 PAJ_RS01905 17464d87133ce7a62c54b6854b7c95e7 565 Pfam PF00999 Sodium/hydrogen exchanger family 15 384 2.0E-80 T 14-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PAJ_RS01905 17464d87133ce7a62c54b6854b7c95e7 565 PANTHER PTHR16254:SF17 1 552 2.7E-300 T 14-09-2016 PAJ_RS07440 8f1f8e55ba474f8e220195ecb592f024 539 PANTHER PTHR30290:SF23 21 539 0.0 T 14-09-2016 PAJ_RS07440 8f1f8e55ba474f8e220195ecb592f024 539 SUPERFAMILY SSF53850 30 531 8.93E-142 T 14-09-2016 PAJ_RS07440 8f1f8e55ba474f8e220195ecb592f024 539 Gene3D G3DSA:3.10.105.10 307 507 2.7E-66 T 14-09-2016 PAJ_RS07440 8f1f8e55ba474f8e220195ecb592f024 539 Gene3D G3DSA:3.40.190.10 155 306 5.5E-49 T 14-09-2016 PAJ_RS07440 8f1f8e55ba474f8e220195ecb592f024 539 PANTHER PTHR30290 21 539 0.0 T 14-09-2016 PAJ_RS07440 8f1f8e55ba474f8e220195ecb592f024 539 PIRSF PIRSF002741 1 539 1.4E-115 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS07440 8f1f8e55ba474f8e220195ecb592f024 539 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 78 457 1.7E-85 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS10990 a778f08e94e035727f0dac2dde93e0d6 310 Pfam PF01226 Formate/nitrite transporter 40 276 2.6E-39 T 14-09-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 PAJ_RS10990 a778f08e94e035727f0dac2dde93e0d6 310 Gene3D G3DSA:1.20.1080.10 57 281 1.7E-43 T 14-09-2016 IPR023271 Aquaporin-like PAJ_RS10990 a778f08e94e035727f0dac2dde93e0d6 310 PANTHER PTHR30520 19 310 5.4E-169 T 14-09-2016 PAJ_RS10990 a778f08e94e035727f0dac2dde93e0d6 310 PANTHER PTHR30520:SF2 19 310 5.4E-169 T 14-09-2016 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 Gene3D G3DSA:2.30.30.30 2 64 1.2E-25 T 14-09-2016 IPR014722 Ribosomal protein L2 domain 2 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 Gene3D G3DSA:2.40.50.140 130 187 4.8E-28 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 5.2E-25 T 14-09-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 SUPERFAMILY SSF50104 6 63 1.87E-17 T 14-09-2016 IPR008991 Translation protein SH3-like domain PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 SUPERFAMILY SSF50249 67 128 3.13E-18 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 SMART SM00841 131 186 3.2E-31 T 14-09-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 6 61 6.3E-24 T 14-09-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 PIRSF PIRSF005901 2 188 2.6E-65 T 14-09-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 PANTHER PTHR30053 1 188 5.0E-90 T 14-09-2016 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 Gene3D G3DSA:2.40.50.140 66 129 2.6E-24 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 TIGRFAM TIGR00038 efp: translation elongation factor P 6 187 1.7E-75 T 14-09-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 14-09-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 3.4E-21 T 14-09-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 SUPERFAMILY SSF50249 130 187 4.28E-18 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 48.803 T 14-09-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 PAJ_RS19640 581e0381dd0ff9a2d638b33fa325d34f 188 SMART SM01185 69 123 2.8E-23 T 14-09-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 PAJ_RS03325 fe5b27e3f62166070cb0aaf471312b9f 133 PANTHER PTHR38097 2 133 3.1E-65 T 14-09-2016 PAJ_RS03325 fe5b27e3f62166070cb0aaf471312b9f 133 SUPERFAMILY SSF81273 90 132 3.26E-11 T 14-09-2016 PAJ_RS03325 fe5b27e3f62166070cb0aaf471312b9f 133 PIRSF PIRSF002096 1 132 1.4E-54 T 14-09-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 PAJ_RS03325 fe5b27e3f62166070cb0aaf471312b9f 133 Gene3D G3DSA:1.10.287.1050 1 58 6.1E-28 T 14-09-2016 IPR027454 Histone-like protein H-NS family, oligomerisation domain GO:0046983 PAJ_RS03325 fe5b27e3f62166070cb0aaf471312b9f 133 Pfam PF00816 H-NS histone family 34 126 2.9E-20 T 14-09-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 PAJ_RS03325 fe5b27e3f62166070cb0aaf471312b9f 133 SUPERFAMILY SSF81273 2 58 1.18E-16 T 14-09-2016 PAJ_RS03325 fe5b27e3f62166070cb0aaf471312b9f 133 SMART SM00528 85 132 1.8E-23 T 14-09-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 PAJ_RS03325 fe5b27e3f62166070cb0aaf471312b9f 133 Gene3D G3DSA:4.10.430.10 89 132 2.5E-25 T 14-09-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 PAJ_RS03325 fe5b27e3f62166070cb0aaf471312b9f 133 PANTHER PTHR38097:SF1 2 133 3.1E-65 T 14-09-2016 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 52 75 - T 14-09-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 Gene3D G3DSA:3.90.190.20 288 415 9.4E-47 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 Pfam PF02875 Mur ligase family, glutamate ligase domain 287 351 4.9E-8 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 412 1.6E-105 T 14-09-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 Pfam PF08245 Mur ligase middle domain 54 229 9.1E-11 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 14-09-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 PANTHER PTHR11136:SF0 1 421 4.4E-130 T 14-09-2016 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 PIRSF PIRSF001563 6 419 1.2E-105 T 14-09-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 Gene3D G3DSA:3.40.1190.10 12 281 2.0E-87 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 SUPERFAMILY SSF53244 286 413 1.18E-35 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 PANTHER PTHR11136 1 421 4.4E-130 T 14-09-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 PAJ_RS10790 53583c5cf21133e75b5fce9020fe6702 422 SUPERFAMILY SSF53623 13 281 2.59E-84 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS06680 b83d68bfc36e6e0136658b3b40eb675a 285 PRINTS PR00990 Ribokinase signature 33 52 1.8E-19 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS06680 b83d68bfc36e6e0136658b3b40eb675a 285 PRINTS PR00990 Ribokinase signature 215 226 1.8E-19 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS06680 b83d68bfc36e6e0136658b3b40eb675a 285 PRINTS PR00990 Ribokinase signature 172 187 1.8E-19 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS06680 b83d68bfc36e6e0136658b3b40eb675a 285 PRINTS PR00990 Ribokinase signature 6 27 1.8E-19 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS06680 b83d68bfc36e6e0136658b3b40eb675a 285 PRINTS PR00990 Ribokinase signature 105 118 1.8E-19 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS06680 b83d68bfc36e6e0136658b3b40eb675a 285 Pfam PF00294 pfkB family carbohydrate kinase 1 278 1.6E-49 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS06680 b83d68bfc36e6e0136658b3b40eb675a 285 SUPERFAMILY SSF53613 1 284 1.54E-58 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS06680 b83d68bfc36e6e0136658b3b40eb675a 285 Gene3D G3DSA:3.40.1190.20 2 284 9.9E-66 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS06680 b83d68bfc36e6e0136658b3b40eb675a 285 PANTHER PTHR10584 1 284 6.5E-60 T 14-09-2016 PAJ_RS06680 b83d68bfc36e6e0136658b3b40eb675a 285 PANTHER PTHR10584:SF166 1 284 6.5E-60 T 14-09-2016 PAJ_RS13245 b0d13e726bef871941dec0e4959fb364 164 PANTHER PTHR10245 40 132 1.0E-13 T 14-09-2016 PAJ_RS13245 b0d13e726bef871941dec0e4959fb364 164 Gene3D G3DSA:2.60.120.10 35 122 4.6E-21 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS13245 b0d13e726bef871941dec0e4959fb364 164 SUPERFAMILY SSF51182 38 146 2.45E-22 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS13245 b0d13e726bef871941dec0e4959fb364 164 PANTHER PTHR10245:SF48 40 132 1.0E-13 T 14-09-2016 PAJ_RS13245 b0d13e726bef871941dec0e4959fb364 164 Pfam PF07883 Cupin domain 48 119 7.7E-18 T 14-09-2016 IPR013096 Cupin 2, conserved barrel PAJ_RS03215 a2109a238ac956e3c39db02b715f8345 405 Pfam PF01979 Amidohydrolase family 63 378 1.5E-18 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 PAJ_RS03215 a2109a238ac956e3c39db02b715f8345 405 PANTHER PTHR22642:SF1 48 403 5.8E-146 T 14-09-2016 PAJ_RS03215 a2109a238ac956e3c39db02b715f8345 405 SUPERFAMILY SSF51556 66 366 4.18E-88 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS03215 a2109a238ac956e3c39db02b715f8345 405 TIGRFAM TIGR01224 hutI: imidazolonepropionase 27 403 4.0E-150 T 14-09-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PAJ_RS03215 a2109a238ac956e3c39db02b715f8345 405 PANTHER PTHR22642 48 403 5.8E-146 T 14-09-2016 PAJ_RS03215 a2109a238ac956e3c39db02b715f8345 405 Hamap MF_00372 Imidazolonepropionase [hutI]. 8 405 41.532 T 14-09-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PAJ_RS03215 a2109a238ac956e3c39db02b715f8345 405 SUPERFAMILY SSF51338 367 403 9.6E-26 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS03215 a2109a238ac956e3c39db02b715f8345 405 SUPERFAMILY SSF51338 7 66 9.6E-26 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS03215 a2109a238ac956e3c39db02b715f8345 405 Gene3D G3DSA:3.20.20.140 78 361 1.7E-42 T 14-09-2016 PAJ_RS03215 a2109a238ac956e3c39db02b715f8345 405 Gene3D G3DSA:2.30.40.10 8 77 1.7E-9 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS04865 adb52fa680c26f813a21048bfb848702 219 SMART SM00849 24 186 2.3E-6 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS04865 adb52fa680c26f813a21048bfb848702 219 SUPERFAMILY SSF56281 25 181 1.46E-22 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS04865 adb52fa680c26f813a21048bfb848702 219 Gene3D G3DSA:3.60.15.10 22 182 4.3E-24 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS04865 adb52fa680c26f813a21048bfb848702 219 Pfam PF00753 Metallo-beta-lactamase superfamily 69 182 8.3E-6 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS02495 6873200429207547c4d2ac3e3554efcd 246 PANTHER PTHR30085 1 244 1.2E-149 T 14-09-2016 PAJ_RS02495 6873200429207547c4d2ac3e3554efcd 246 Gene3D G3DSA:1.10.3720.10 23 238 5.8E-43 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS02495 6873200429207547c4d2ac3e3554efcd 246 PANTHER PTHR30085:SF4 1 244 1.2E-149 T 14-09-2016 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ GO:0006865|GO:0016021|GO:0043190 PAJ_RS02495 6873200429207547c4d2ac3e3554efcd 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 23 132 1.9E-16 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS02495 6873200429207547c4d2ac3e3554efcd 246 SUPERFAMILY SSF161098 24 223 5.36E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS02495 6873200429207547c4d2ac3e3554efcd 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 47 238 1.2E-27 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 2.0E-14 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 Gene3D G3DSA:1.10.10.10 2 49 6.9E-11 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 PRINTS PR00990 Ribokinase signature 126 145 2.3E-30 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 PRINTS PR00990 Ribokinase signature 199 212 2.3E-30 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 PRINTS PR00990 Ribokinase signature 311 322 2.3E-30 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 PRINTS PR00990 Ribokinase signature 99 120 2.3E-30 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 PRINTS PR00990 Ribokinase signature 267 282 2.3E-30 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 PANTHER PTHR10584 78 397 4.9E-89 T 14-09-2016 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 97 391 4.4E-91 T 14-09-2016 IPR011877 Ribokinase, bacterial type GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|UniPathway: UPA00916 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 340 353 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 SMART SM00420 6 58 8.0E-13 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 PANTHER PTHR10584:SF166 78 397 4.9E-89 T 14-09-2016 PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 Gene3D G3DSA:3.40.1190.20 95 397 2.1E-85 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 SUPERFAMILY SSF46785 3 59 1.68E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 SUPERFAMILY SSF53613 96 394 2.18E-76 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS20375 88f4b6345f68f076bd17c29f75c4db1f 398 Pfam PF00294 pfkB family carbohydrate kinase 96 386 3.0E-65 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS20355 42e5393df2fbc3280573e1068bc2c8ef 208 Gene3D G3DSA:1.10.287.70 134 186 7.2E-4 T 14-09-2016 PAJ_RS20355 42e5393df2fbc3280573e1068bc2c8ef 208 Pfam PF01810 LysE type translocator 16 205 9.7E-27 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS20355 42e5393df2fbc3280573e1068bc2c8ef 208 PANTHER PTHR30086 2 207 1.5E-30 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 SUPERFAMILY SSF53850 95 280 1.32E-19 T 14-09-2016 PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 SUPERFAMILY SSF46785 3 106 9.87E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 8.1E-20 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 PANTHER PTHR30579 2 280 1.5E-75 T 14-09-2016 PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 Gene3D G3DSA:1.10.10.10 6 85 3.9E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 Gene3D G3DSA:3.40.190.10 190 238 3.4E-5 T 14-09-2016 PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 3.1E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 3.1E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 3.1E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 Gene3D G3DSA:3.40.190.10 94 189 2.7E-12 T 14-09-2016 PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 Pfam PF03466 LysR substrate binding domain 95 241 1.4E-19 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS01340 4795098326ab783cb226bf768babefbc 286 PANTHER PTHR30579:SF0 2 280 1.5E-75 T 14-09-2016 PAJ_RS05470 c79b1da427afc2f3687b6890a4003b15 92 Pfam PF10762 Protein of unknown function (DUF2583) 1 89 8.6E-41 T 14-09-2016 IPR019698 Protein of unknown function DUF2583 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 Pfam PF02954 Bacterial regulatory protein, Fis family 583 623 2.2E-12 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 Gene3D G3DSA:1.10.10.60 567 626 4.0E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 SUPERFAMILY SSF46689 525 626 8.36E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 SUPERFAMILY SSF52540 315 556 2.0E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 SMART SM00382 336 481 2.0E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 Pfam PF00158 Sigma-54 interaction domain 316 483 2.8E-60 T 14-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 589 606 8.6E-8 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 606 626 8.6E-8 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 Gene3D G3DSA:3.40.50.10660 92 164 3.2E-13 T 14-09-2016 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 Pfam PF06506 Propionate catabolism activator 26 190 1.3E-41 T 14-09-2016 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 Gene3D G3DSA:3.40.50.300 313 488 2.9E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 Gene3D G3DSA:1.10.8.60 490 556 4.0E-19 T 14-09-2016 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 PANTHER PTHR32071 301 626 1.2E-130 T 14-09-2016 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 Gene3D G3DSA:3.40.50.2300 24 91 8.9E-7 T 14-09-2016 PAJ_RS12340 efce35f841d3b93cfae9907b5f426c18 627 SUPERFAMILY SSF159800 5 186 2.09E-43 T 14-09-2016 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 351 364 - T 14-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 Gene3D G3DSA:3.40.50.300 324 496 9.9E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 SMART SM00382 347 488 7.3E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 SUPERFAMILY SSF46689 584 631 2.46E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 410 425 - T 14-09-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 Gene3D G3DSA:3.30.450.20 204 304 4.6E-7 T 14-09-2016 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 SMART SM00091 203 269 0.0028 T 14-09-2016 IPR000014 PAS domain PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 Pfam PF00989 PAS fold 205 306 2.9E-13 T 14-09-2016 IPR013767 PAS fold GO:0006355 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 SUPERFAMILY SSF52540 335 566 4.39E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 PANTHER PTHR32071:SF16 255 638 3.2E-114 T 14-09-2016 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 Gene3D G3DSA:1.10.10.60 583 627 1.1E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 Pfam PF02954 Bacterial regulatory protein, Fis family 589 628 6.8E-10 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 Gene3D G3DSA:1.10.8.60 497 573 1.5E-14 T 14-09-2016 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 Pfam PF00158 Sigma-54 interaction domain 331 490 1.1E-32 T 14-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 PANTHER PTHR32071 255 638 3.2E-114 T 14-09-2016 PAJ_RS01240 9ea7df7dead0129e555ac0daf76371bb 638 SUPERFAMILY SSF55785 202 291 5.86E-5 T 14-09-2016 IPR000014 PAS domain PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 PANTHER PTHR11575 6 644 0.0 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 Pfam PF02872 5'-nucleotidase, C-terminal domain 355 549 5.8E-24 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 SUPERFAMILY SSF56300 18 352 1.4E-82 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 PRINTS PR01607 Apyrase family signature 243 266 3.3E-32 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 PRINTS PR01607 Apyrase family signature 428 451 3.3E-32 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 PRINTS PR01607 Apyrase family signature 215 232 3.3E-32 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 PRINTS PR01607 Apyrase family signature 22 40 3.3E-32 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 PRINTS PR01607 Apyrase family signature 283 303 3.3E-32 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 PRINTS PR01607 Apyrase family signature 529 548 3.3E-32 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 Gene3D G3DSA:3.90.780.10 355 594 1.5E-45 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 Gene3D G3DSA:3.60.21.10 16 352 2.1E-92 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 22 645 0.0 T 14-09-2016 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 SUPERFAMILY SSF55816 355 595 2.75E-39 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 PANTHER PTHR11575:SF6 6 644 0.0 T 14-09-2016 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 ProSitePatterns PS00785 5'-nucleotidase signature 1. 24 36 - T 14-09-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 ProSitePatterns PS00786 5'-nucleotidase signature 2. 109 120 - T 14-09-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 PAJ_RS15290 8e1a06feff2268aa3d4049f5135b8267 646 Pfam PF00149 Calcineurin-like phosphoesterase 24 259 2.3E-11 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 SUPERFAMILY SSF48557 10 454 3.93E-105 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 1.4E-51 T 14-09-2016 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 1.9E-17 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 1.9E-17 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 1.9E-17 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 1.9E-17 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 Gene3D G3DSA:1.10.275.10 1 119 2.1E-49 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 Gene3D G3DSA:1.10.40.30 390 445 2.4E-33 T 14-09-2016 PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 5.5E-152 T 14-09-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 PANTHER PTHR11444 4 455 0.0 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 14-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 Pfam PF00206 Lyase 14 312 5.2E-77 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 Gene3D G3DSA:1.20.200.10 120 389 2.2E-88 T 14-09-2016 PAJ_RS04690 3cff48d034ed2c9b39070a4e5afa457e 456 PANTHER PTHR11444:SF17 4 455 0.0 T 14-09-2016 PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 Pfam PF00293 NUDIX domain 5 125 5.2E-20 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 Gene3D G3DSA:3.90.79.10 4 126 2.7E-33 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.2E-9 T 14-09-2016 IPR020476 NUDIX hydrolase PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.2E-9 T 14-09-2016 IPR020476 NUDIX hydrolase PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 126 2.5E-45 T 14-09-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 PANTHER PTHR22769 1 127 6.6E-55 T 14-09-2016 PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 PRINTS PR01401 Mutator MutT protein signature 2 23 3.1E-9 T 14-09-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 PRINTS PR01401 Mutator MutT protein signature 77 90 3.1E-9 T 14-09-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 PANTHER PTHR22769:SF36 1 127 6.6E-55 T 14-09-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 SUPERFAMILY SSF55811 1 126 5.15E-37 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS00370 54810a79bba6c2506c3059aa76041a2c 131 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PAJ_RS18375 d2133fe8ed7fb048cd6c101c3de4ae01 242 SUPERFAMILY SSF69618 1 242 5.49E-50 T 14-09-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18375 d2133fe8ed7fb048cd6c101c3de4ae01 242 Gene3D G3DSA:3.40.50.10090 5 113 2.6E-9 T 14-09-2016 PAJ_RS18375 d2133fe8ed7fb048cd6c101c3de4ae01 242 PANTHER PTHR38042 1 241 4.1E-74 T 14-09-2016 PAJ_RS18375 d2133fe8ed7fb048cd6c101c3de4ae01 242 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 238 4.6E-37 T 14-09-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PAJ_RS18375 d2133fe8ed7fb048cd6c101c3de4ae01 242 PANTHER PTHR38042:SF1 1 241 4.1E-74 T 14-09-2016 PAJ_RS18375 d2133fe8ed7fb048cd6c101c3de4ae01 242 Gene3D G3DSA:3.40.50.10090 119 242 4.9E-9 T 14-09-2016 PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 PANTHER PTHR24220:SF151 5 312 5.9E-147 T 14-09-2016 PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 SUPERFAMILY SSF50331 236 362 1.34E-24 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 Gene3D G3DSA:3.40.50.300 3 234 2.1E-76 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 Gene3D G3DSA:2.40.50.140 287 347 7.3E-10 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 SMART SM00382 28 211 1.7E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 Pfam PF00005 ABC transporter 20 161 4.7E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 Gene3D G3DSA:2.40.50.100 239 286 7.8E-19 T 14-09-2016 PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 Gene3D G3DSA:2.40.50.100 349 363 7.8E-19 T 14-09-2016 PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 SUPERFAMILY SSF52540 4 242 2.32E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 PANTHER PTHR24220 5 312 5.9E-147 T 14-09-2016 PAJ_RS19225 090d27df8d983cdb0426cfa5e12b0c7f 363 Pfam PF08402 TOBE domain 282 355 2.8E-12 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 PANTHER PTHR11644:SF15 18 296 3.3E-139 T 14-09-2016 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 SUPERFAMILY SSF53927 152 291 3.61E-38 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 PANTHER PTHR11644 18 296 3.3E-139 T 14-09-2016 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 Hamap MF_01558 Cytidine deaminase [cdd]. 1 292 47.584 T 14-09-2016 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 Gene3D G3DSA:3.40.140.10 188 290 1.4E-23 T 14-09-2016 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 PIRSF PIRSF006334 14 295 4.3E-100 T 14-09-2016 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 62 140 2.6E-12 T 14-09-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 276 8.4E-41 T 14-09-2016 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 14-09-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 Gene3D G3DSA:3.40.140.10 31 177 3.9E-43 T 14-09-2016 PAJ_RS10130 0a670cae06df9870961a416709b304ea 296 SUPERFAMILY SSF53927 1 145 3.18E-38 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 PAJ_RS04155 3e400cc312aac82cf548284693cd232a 108 TIGRFAM TIGR01560 put_DNA_pack: uncharacterized phage protein (possible DNA packaging) 5 104 2.9E-9 T 14-09-2016 IPR006450 Phage protein of unkonwn function PAJ_RS04155 3e400cc312aac82cf548284693cd232a 108 Pfam PF05135 Phage gp6-like head-tail connector protein 3 104 7.9E-23 T 14-09-2016 IPR021146 Phage gp6-like head-tail connector protein PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 PANTHER PTHR10000:SF20 1 266 2.9E-126 T 14-09-2016 PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 14-09-2016 IPR000150 Cof protein GO:0016787 PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 PANTHER PTHR10000 1 266 2.9E-126 T 14-09-2016 PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 SUPERFAMILY SSF56784 1 264 5.24E-68 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 ProSitePatterns PS01229 Hypothetical cof family signature 2. 212 234 - T 14-09-2016 PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 231 1.7E-30 T 14-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 Gene3D G3DSA:3.30.1240.10 83 176 1.3E-19 T 14-09-2016 PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 Gene3D G3DSA:3.40.50.1000 1 72 1.6E-56 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 Gene3D G3DSA:3.40.50.1000 177 265 1.6E-56 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 256 2.5E-59 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18470 e49443fea1244ea6c6347eda8db03eb5 266 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 257 3.2E-63 T 14-09-2016 IPR000150 Cof protein GO:0016787 PAJ_RS03620 f6f637dcc926783b45df0e5309f4443c 361 Gene3D G3DSA:3.40.640.10 17 257 1.2E-99 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS03620 f6f637dcc926783b45df0e5309f4443c 361 PANTHER PTHR21152:SF1 3 361 4.6E-183 T 14-09-2016 PAJ_RS03620 f6f637dcc926783b45df0e5309f4443c 361 Gene3D G3DSA:3.90.1150.10 259 360 5.3E-40 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS03620 f6f637dcc926783b45df0e5309f4443c 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 360 2.7E-152 T 14-09-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 PAJ_RS03620 f6f637dcc926783b45df0e5309f4443c 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 360 50.358 T 14-09-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 PAJ_RS03620 f6f637dcc926783b45df0e5309f4443c 361 PIRSF PIRSF000525 1 361 2.3E-144 T 14-09-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 PAJ_RS03620 f6f637dcc926783b45df0e5309f4443c 361 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 188 207 - T 14-09-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PAJ_RS03620 f6f637dcc926783b45df0e5309f4443c 361 PANTHER PTHR21152 3 361 4.6E-183 T 14-09-2016 PAJ_RS03620 f6f637dcc926783b45df0e5309f4443c 361 Pfam PF00266 Aminotransferase class-V 4 349 2.7E-62 T 14-09-2016 IPR000192 Aminotransferase class V domain PAJ_RS03620 f6f637dcc926783b45df0e5309f4443c 361 SUPERFAMILY SSF53383 1 359 1.35E-106 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS08415 52b3bde2f22161bea77025435b0809d2 242 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 4 242 3.0E-125 T 14-09-2016 IPR005271 tRNA (cmo5U34)-methyltransferase GO:0002098|GO:0016300 PAJ_RS08415 52b3bde2f22161bea77025435b0809d2 242 PIRSF PIRSF006325 1 242 1.5E-128 T 14-09-2016 IPR005271 tRNA (cmo5U34)-methyltransferase GO:0002098|GO:0016300 PAJ_RS08415 52b3bde2f22161bea77025435b0809d2 242 Gene3D G3DSA:3.40.50.150 19 241 2.6E-61 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08415 52b3bde2f22161bea77025435b0809d2 242 PANTHER PTHR10108 1 241 3.0E-108 T 14-09-2016 PAJ_RS08415 52b3bde2f22161bea77025435b0809d2 242 Pfam PF13649 Methyltransferase domain 60 158 1.4E-12 T 14-09-2016 PAJ_RS08415 52b3bde2f22161bea77025435b0809d2 242 PANTHER PTHR10108:SF809 1 241 3.0E-108 T 14-09-2016 PAJ_RS08415 52b3bde2f22161bea77025435b0809d2 242 Hamap MF_01589 tRNA (cmo5U34)-methyltransferase [cmoA]. 3 242 42.206 T 14-09-2016 IPR005271 tRNA (cmo5U34)-methyltransferase GO:0002098|GO:0016300 PAJ_RS08415 52b3bde2f22161bea77025435b0809d2 242 SUPERFAMILY SSF53335 20 242 2.3E-40 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS13480 846a4cf7b0c2a417828d9a889e6e8260 235 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 77 91 - T 14-09-2016 IPR011078 Uncharacterised protein family UPF0001 PAJ_RS13480 846a4cf7b0c2a417828d9a889e6e8260 235 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 227 3.9E-96 T 14-09-2016 IPR011078 Uncharacterised protein family UPF0001 PAJ_RS13480 846a4cf7b0c2a417828d9a889e6e8260 235 PIRSF PIRSF004848 1 233 1.4E-75 T 14-09-2016 IPR011078 Uncharacterised protein family UPF0001 PAJ_RS13480 846a4cf7b0c2a417828d9a889e6e8260 235 Gene3D G3DSA:3.20.20.10 1 231 4.6E-94 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS13480 846a4cf7b0c2a417828d9a889e6e8260 235 PANTHER PTHR10146 3 231 1.2E-103 T 14-09-2016 IPR011078 Uncharacterised protein family UPF0001 PAJ_RS13480 846a4cf7b0c2a417828d9a889e6e8260 235 Pfam PF01168 Alanine racemase, N-terminal domain 7 227 4.1E-31 T 14-09-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS13480 846a4cf7b0c2a417828d9a889e6e8260 235 SUPERFAMILY SSF51419 1 225 6.54E-82 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 840 0.0 T 14-09-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 845 30.338 T 14-09-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 SUPERFAMILY SSF101904 533 850 2.35E-112 T 14-09-2016 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Gene3D G3DSA:3.30.1360.40 236 333 1.3E-37 T 14-09-2016 IPR024946 Arginine repressor C-terminal-like domain PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 6.2E-156 T 14-09-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 SUPERFAMILY SSF56719 30 521 1.96E-184 T 14-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 PANTHER PTHR10169:SF48 2 414 0.0 T 14-09-2016 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 PANTHER PTHR10169:SF48 450 814 0.0 T 14-09-2016 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Gene3D G3DSA:1.10.268.10 363 497 6.9E-51 T 14-09-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 793 839 9.0E-13 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 692 737 7.9E-14 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 5.4E-11 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 2.4E-10 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 689 5.1E-9 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 744 787 1.0E-11 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 PANTHER PTHR10169 2 414 0.0 T 14-09-2016 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 PANTHER PTHR10169 450 814 0.0 T 14-09-2016 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 SMART SM00434 11 499 5.4E-303 T 14-09-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Gene3D G3DSA:3.90.199.10 34 216 1.2E-85 T 14-09-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 PAJ_RS10520 2e94d46fa78fff546d08622536b2c2cc 880 Gene3D G3DSA:2.120.10.90 531 839 6.0E-142 T 14-09-2016 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 PANTHER PTHR10909:SF334 9 299 6.9E-113 T 14-09-2016 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 Gene3D G3DSA:1.10.540.10 4 107 7.8E-19 T 14-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 Gene3D G3DSA:1.20.140.10 208 393 2.1E-40 T 14-09-2016 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 236 371 5.5E-10 T 14-09-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 PIRSF PIRSF016578 1 378 4.2E-23 T 14-09-2016 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 18 113 4.9E-5 T 14-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 Gene3D G3DSA:2.40.110.10 126 207 6.7E-18 T 14-09-2016 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 SUPERFAMILY SSF56645 16 213 6.41E-37 T 14-09-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 SUPERFAMILY SSF47203 227 370 3.14E-7 T 14-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 PANTHER PTHR10909 315 396 6.9E-113 T 14-09-2016 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 PANTHER PTHR10909 9 299 6.9E-113 T 14-09-2016 PAJ_RS08625 76b799467a3214902f3dc0c1a01c9ba1 400 PANTHER PTHR10909:SF334 315 396 6.9E-113 T 14-09-2016 PAJ_RS09265 ab7f8e97ee65bbd0dc7562274aa0bcbb 160 Gene3D G3DSA:2.30.110.20 1 159 2.1E-62 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS09265 ab7f8e97ee65bbd0dc7562274aa0bcbb 160 Pfam PF05638 Type VI secretion system effector, Hcp 6 133 1.4E-38 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS09265 ab7f8e97ee65bbd0dc7562274aa0bcbb 160 PANTHER PTHR36152 1 160 1.0E-48 T 14-09-2016 PAJ_RS09265 ab7f8e97ee65bbd0dc7562274aa0bcbb 160 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 135 1.2E-16 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS09265 ab7f8e97ee65bbd0dc7562274aa0bcbb 160 PANTHER PTHR36152:SF1 1 160 1.0E-48 T 14-09-2016 PAJ_RS09265 ab7f8e97ee65bbd0dc7562274aa0bcbb 160 SUPERFAMILY SSF141452 2 159 3.66E-49 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS08010 c1a10ece0bdfd08fe7079fda443c77fc 148 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 2 145 40.225 T 14-09-2016 IPR008228 Uncharacterised conserved protein UCP006173 PAJ_RS08010 c1a10ece0bdfd08fe7079fda443c77fc 148 Pfam PF03692 Putative zinc- or iron-chelating domain 24 92 1.5E-7 T 14-09-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein PAJ_RS08010 c1a10ece0bdfd08fe7079fda443c77fc 148 PIRSF PIRSF006173 1 145 1.0E-65 T 14-09-2016 IPR008228 Uncharacterised conserved protein UCP006173 PAJ_RS08010 c1a10ece0bdfd08fe7079fda443c77fc 148 PANTHER PTHR37421 1 148 6.0E-76 T 14-09-2016 PAJ_RS08010 c1a10ece0bdfd08fe7079fda443c77fc 148 PANTHER PTHR37421:SF1 1 148 6.0E-76 T 14-09-2016 PAJ_RS12090 90868b2ff33d619ee5387c120c1b0a45 127 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 127 41.536 T 14-09-2016 IPR011140 Autonomous glycyl radical cofactor GrcA PAJ_RS12090 90868b2ff33d619ee5387c120c1b0a45 127 Pfam PF01228 Glycine radical 13 108 3.5E-23 T 14-09-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 PAJ_RS12090 90868b2ff33d619ee5387c120c1b0a45 127 SUPERFAMILY SSF51998 65 126 8.24E-24 T 14-09-2016 PAJ_RS12090 90868b2ff33d619ee5387c120c1b0a45 127 PANTHER PTHR30191:SF5 1 127 5.5E-93 T 14-09-2016 PAJ_RS12090 90868b2ff33d619ee5387c120c1b0a45 127 Gene3D G3DSA:3.20.70.20 36 126 7.4E-34 T 14-09-2016 PAJ_RS12090 90868b2ff33d619ee5387c120c1b0a45 127 ProSitePatterns PS00850 Glycine radical domain signature. 97 105 - T 14-09-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site PAJ_RS12090 90868b2ff33d619ee5387c120c1b0a45 127 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 127 7.1E-70 T 14-09-2016 IPR011140 Autonomous glycyl radical cofactor GrcA PAJ_RS12090 90868b2ff33d619ee5387c120c1b0a45 127 PANTHER PTHR30191 1 127 5.5E-93 T 14-09-2016 PAJ_RS12090 90868b2ff33d619ee5387c120c1b0a45 127 PIRSF PIRSF000378 2 127 5.7E-54 T 14-09-2016 IPR011140 Autonomous glycyl radical cofactor GrcA PAJ_RS05540 9f0569069a7cf81bd6084b589520805c 470 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 29 52 - T 14-09-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 PAJ_RS05540 9f0569069a7cf81bd6084b589520805c 470 PANTHER PTHR24362:SF160 81 335 9.9E-41 T 14-09-2016 PAJ_RS05540 9f0569069a7cf81bd6084b589520805c 470 PANTHER PTHR24362:SF160 21 63 9.9E-41 T 14-09-2016 PAJ_RS05540 9f0569069a7cf81bd6084b589520805c 470 Pfam PF00069 Protein kinase domain 23 242 3.3E-24 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 PAJ_RS05540 9f0569069a7cf81bd6084b589520805c 470 SUPERFAMILY SSF56112 19 293 1.04E-45 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS05540 9f0569069a7cf81bd6084b589520805c 470 PANTHER PTHR24362 21 63 9.9E-41 T 14-09-2016 PAJ_RS05540 9f0569069a7cf81bd6084b589520805c 470 PANTHER PTHR24362 81 335 9.9E-41 T 14-09-2016 PAJ_RS05540 9f0569069a7cf81bd6084b589520805c 470 Gene3D G3DSA:1.10.510.10 105 288 3.9E-26 T 14-09-2016 PAJ_RS05540 9f0569069a7cf81bd6084b589520805c 470 Gene3D G3DSA:3.30.200.20 18 104 3.3E-14 T 14-09-2016 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 SUPERFAMILY SSF56796 451 864 2.22E-117 T 14-09-2016 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 632 660 - T 14-09-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 PANTHER PTHR11496 360 867 0.0 T 14-09-2016 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 PANTHER PTHR11496:SF79 360 867 0.0 T 14-09-2016 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 SUPERFAMILY SSF53720 6 453 2.49E-82 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 Gene3D G3DSA:3.40.309.10 226 273 1.7E-29 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 Gene3D G3DSA:3.40.309.10 309 404 1.7E-29 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 Gene3D G3DSA:3.40.50.1970 450 643 1.2E-63 T 14-09-2016 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 Gene3D G3DSA:3.40.605.10 4 225 1.9E-24 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 720 740 - T 14-09-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 Pfam PF00171 Aldehyde dehydrogenase family 5 270 8.0E-26 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 850 1.2E-113 T 14-09-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 Gene3D G3DSA:1.20.1090.10 644 864 7.5E-68 T 14-09-2016 PAJ_RS07815 50d96033f3e856de5f2ee7e8ea44a2de 895 PIRSF PIRSF000111 1 866 0.0 T 14-09-2016 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00592+1.1.1.1|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00650+1.2.1.10|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7085|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7180|MetaCyc: PWY-7396 PAJ_RS16415 f022929b187cba0dd40999c43868ad78 639 PANTHER PTHR10584 2 356 7.2E-188 T 14-09-2016 PAJ_RS16415 f022929b187cba0dd40999c43868ad78 639 SUPERFAMILY SSF53613 7 332 2.03E-70 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS16415 f022929b187cba0dd40999c43868ad78 639 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 327 635 6.8E-136 T 14-09-2016 IPR018659 Protein of unknown function DUF2090 PAJ_RS16415 f022929b187cba0dd40999c43868ad78 639 PANTHER PTHR10584:SF194 2 356 7.2E-188 T 14-09-2016 PAJ_RS16415 f022929b187cba0dd40999c43868ad78 639 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 8 332 1.5E-122 T 14-09-2016 IPR030830 5-dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92|UniPathway: UPA00076 PAJ_RS16415 f022929b187cba0dd40999c43868ad78 639 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 276 289 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS16415 f022929b187cba0dd40999c43868ad78 639 Pfam PF00294 pfkB family carbohydrate kinase 9 324 8.6E-41 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS16415 f022929b187cba0dd40999c43868ad78 639 Gene3D G3DSA:3.40.1190.20 3 335 3.8E-83 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 1.7E-259 T 14-09-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.063 T 14-09-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 SUPERFAMILY SSF52540 96 381 6.38E-93 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 2.1E-44 T 14-09-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 Gene3D G3DSA:1.20.150.20 383 510 8.4E-48 T 14-09-2016 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 14-09-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 PANTHER PTHR15184 1 496 1.3E-289 T 14-09-2016 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 Gene3D G3DSA:2.40.30.20 1 93 6.4E-30 T 14-09-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 SUPERFAMILY SSF50615 10 94 5.3E-26 T 14-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 Gene3D G3DSA:3.40.50.300 94 382 2.6E-111 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 SUPERFAMILY SSF47917 383 511 4.97E-45 T 14-09-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 1.4E-72 T 14-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 92 2.4E-13 T 14-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17645 16ca82c0fa09071a52621231fae6d0ba 513 PANTHER PTHR15184:SF3 1 496 1.3E-289 T 14-09-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS18580 8c1b9b042e546472d41ccc290f769233 205 Gene3D G3DSA:3.30.70.240 138 203 1.3E-22 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain PAJ_RS18580 8c1b9b042e546472d41ccc290f769233 205 Gene3D G3DSA:3.30.230.30 13 132 5.0E-42 T 14-09-2016 IPR001498 Impact, N-terminal PAJ_RS18580 8c1b9b042e546472d41ccc290f769233 205 SUPERFAMILY SSF54211 11 133 1.4E-41 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS18580 8c1b9b042e546472d41ccc290f769233 205 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 6 200 3.4E-74 T 14-09-2016 IPR015796 Impact family, bacterial/archaeal PAJ_RS18580 8c1b9b042e546472d41ccc290f769233 205 Pfam PF01205 Uncharacterized protein family UPF0029 19 124 1.8E-26 T 14-09-2016 IPR001498 Impact, N-terminal PAJ_RS18580 8c1b9b042e546472d41ccc290f769233 205 Pfam PF09186 Domain of unknown function (DUF1949) 142 196 4.9E-14 T 14-09-2016 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal PAJ_RS18580 8c1b9b042e546472d41ccc290f769233 205 PANTHER PTHR16301 15 198 8.7E-59 T 14-09-2016 IPR023582 Impact family PAJ_RS18580 8c1b9b042e546472d41ccc290f769233 205 SUPERFAMILY SSF54980 137 202 9.35E-16 T 14-09-2016 IPR009022 Elongation factor G, III-V domain PAJ_RS18580 8c1b9b042e546472d41ccc290f769233 205 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 81 110 - T 14-09-2016 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 Gene3D G3DSA:3.30.70.920 60 141 2.6E-22 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 SUPERFAMILY SSF46785 6 67 5.65E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 Gene3D G3DSA:1.10.10.10 3 58 4.7E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 PANTHER PTHR30154 1 153 9.4E-63 T 14-09-2016 PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 7.1E-13 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 7.1E-13 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 7.1E-13 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 PANTHER PTHR30154:SF2 1 153 9.4E-63 T 14-09-2016 PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 7 53 4.8E-14 T 14-09-2016 PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 14-09-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 SUPERFAMILY SSF54909 68 153 1.88E-18 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 SMART SM00344 7 114 2.5E-39 T 14-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PAJ_RS17600 abcd12df96abd36e6257f2afb77922df 153 Pfam PF01037 Lrp/AsnC ligand binding domain 80 144 2.4E-16 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS16695 48ec44f72b15dd3336ae4dff69ba2441 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 6 29 5.9E-10 T 14-09-2016 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 PAJ_RS16695 48ec44f72b15dd3336ae4dff69ba2441 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 7 29 1.8E-6 T 14-09-2016 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 139 1.6E-42 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 SUPERFAMILY SSF52788 1 142 4.19E-41 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 SMART SM00226 3 141 3.2E-60 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 PANTHER PTHR11717 1 142 3.3E-59 T 14-09-2016 PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 PANTHER PTHR11717:SF20 1 142 3.3E-59 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 41 57 1.6E-27 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 75 90 1.6E-27 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 97 110 1.6E-27 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 128 1.6E-27 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 5 22 1.6E-27 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PAJ_RS09955 950db7fd23c384a0f5b15a06b5879b75 144 Gene3D G3DSA:3.40.50.270 2 142 8.0E-44 T 14-09-2016 PAJ_RS14425 48dbb53ca30eb81643a2480471e65b52 217 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 45 53 - T 14-09-2016 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 PAJ_RS14425 48dbb53ca30eb81643a2480471e65b52 217 SUPERFAMILY SSF100950 5 213 1.12E-59 T 14-09-2016 PAJ_RS14425 48dbb53ca30eb81643a2480471e65b52 217 SMART SM00882 7 204 1.6E-61 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PAJ_RS14425 48dbb53ca30eb81643a2480471e65b52 217 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 5 209 3.2E-87 T 14-09-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 PAJ_RS14425 48dbb53ca30eb81643a2480471e65b52 217 PANTHER PTHR13707 6 186 5.3E-75 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PAJ_RS14425 48dbb53ca30eb81643a2480471e65b52 217 Gene3D G3DSA:3.40.810.20 5 209 5.5E-74 T 14-09-2016 PAJ_RS14425 48dbb53ca30eb81643a2480471e65b52 217 Pfam PF01144 Coenzyme A transferase 7 202 1.6E-35 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PAJ_RS01320 503e27bd52093347c8e6fd697fbad62f 130 Gene3D G3DSA:2.40.50.200 30 128 1.2E-24 T 14-09-2016 IPR005220 Bacterial OB-fold PAJ_RS01320 503e27bd52093347c8e6fd697fbad62f 130 PANTHER PTHR36571 1 128 2.5E-12 T 14-09-2016 PAJ_RS01320 503e27bd52093347c8e6fd697fbad62f 130 Pfam PF04076 Bacterial OB fold (BOF) protein 29 128 2.6E-19 T 14-09-2016 IPR005220 Bacterial OB-fold PAJ_RS01320 503e27bd52093347c8e6fd697fbad62f 130 SUPERFAMILY SSF101756 35 127 8.5E-20 T 14-09-2016 IPR005220 Bacterial OB-fold PAJ_RS08445 659bfd82894ec1e0c5b4e924918f4e13 380 Gene3D G3DSA:3.40.640.10 40 248 4.0E-46 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS08445 659bfd82894ec1e0c5b4e924918f4e13 380 PANTHER PTHR11751:SF21 4 377 3.2E-107 T 14-09-2016 PAJ_RS08445 659bfd82894ec1e0c5b4e924918f4e13 380 Gene3D G3DSA:3.90.1150.10 249 377 2.9E-31 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS08445 659bfd82894ec1e0c5b4e924918f4e13 380 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 376 5.5E-123 T 14-09-2016 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 PAJ_RS08445 659bfd82894ec1e0c5b4e924918f4e13 380 SUPERFAMILY SSF53383 1 377 9.87E-91 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS08445 659bfd82894ec1e0c5b4e924918f4e13 380 PANTHER PTHR11751 4 377 3.2E-107 T 14-09-2016 PAJ_RS08445 659bfd82894ec1e0c5b4e924918f4e13 380 Pfam PF00155 Aminotransferase class I and II 40 372 9.3E-27 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 Gene3D G3DSA:3.40.50.300 3 206 1.2E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 Gene3D G3DSA:2.40.50.250 483 577 2.2E-40 T 14-09-2016 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 SUPERFAMILY SSF54980 398 512 6.23E-25 T 14-09-2016 IPR009022 Elongation factor G, III-V domain PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 PRINTS PR00315 GTP-binding elongation factor signature 87 98 9.6E-15 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 PRINTS PR00315 GTP-binding elongation factor signature 123 132 9.6E-15 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 PRINTS PR00315 GTP-binding elongation factor signature 71 81 9.6E-15 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 PRINTS PR00315 GTP-binding elongation factor signature 51 59 9.6E-15 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 PRINTS PR00315 GTP-binding elongation factor signature 7 20 9.6E-15 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 1.7E-25 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 Pfam PF03144 Elongation factor Tu domain 2 219 289 4.2E-11 T 14-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 Pfam PF00679 Elongation factor G C-terminus 397 476 1.8E-20 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 PANTHER PTHR23115 3 593 2.9E-300 T 14-09-2016 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 Gene3D G3DSA:3.30.70.240 400 477 3.6E-29 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 2.0E-290 T 14-09-2016 IPR006298 GTP-binding protein TypA GO:0005525 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 SUPERFAMILY SSF54980 302 387 3.24E-15 T 14-09-2016 IPR009022 Elongation factor G, III-V domain PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 PANTHER PTHR23115:SF14 3 593 2.9E-300 T 14-09-2016 IPR006298 GTP-binding protein TypA GO:0005525 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 Pfam PF00009 Elongation factor Tu GTP binding domain 4 194 3.5E-58 T 14-09-2016 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 SUPERFAMILY SSF50447 151 299 1.02E-31 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 SUPERFAMILY SSF52540 3 207 1.49E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 Gene3D G3DSA:3.30.70.870 304 399 2.5E-36 T 14-09-2016 PAJ_RS17445 5966e734c2d89ef8038f4f8a89ee69b2 607 Gene3D G3DSA:2.40.30.10 207 303 2.6E-25 T 14-09-2016 PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 PANTHER PTHR23501:SF71 9 487 5.4E-123 T 14-09-2016 PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 Gene3D G3DSA:1.20.1250.20 11 191 2.3E-37 T 14-09-2016 PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 Gene3D G3DSA:1.20.1250.20 262 422 1.7E-16 T 14-09-2016 PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 Gene3D G3DSA:1.20.1250.20 460 486 1.7E-16 T 14-09-2016 PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 PANTHER PTHR23501 9 487 5.4E-123 T 14-09-2016 PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 SUPERFAMILY SSF103473 245 416 5.1E-72 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 SUPERFAMILY SSF103473 455 484 5.1E-72 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 SUPERFAMILY SSF103473 5 196 5.1E-72 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 Pfam PF07690 Major Facilitator Superfamily 19 406 5.9E-53 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 PRINTS PR01036 Tetracycline resistance protein TetB signature 397 416 6.3E-8 T 14-09-2016 PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 PRINTS PR01036 Tetracycline resistance protein TetB signature 76 98 6.3E-8 T 14-09-2016 PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 PRINTS PR01036 Tetracycline resistance protein TetB signature 137 161 6.3E-8 T 14-09-2016 PAJ_RS07215 d5c3fa631e82907448061480bdee9b21 487 PRINTS PR01036 Tetracycline resistance protein TetB signature 264 289 6.3E-8 T 14-09-2016 PAJ_RS11730 f0c6d8be37f2ede10e05885d2596aede 656 SUPERFAMILY SSF48452 83 227 4.17E-10 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS11730 f0c6d8be37f2ede10e05885d2596aede 656 Gene3D G3DSA:1.25.40.10 79 312 1.5E-16 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS11730 f0c6d8be37f2ede10e05885d2596aede 656 SUPERFAMILY SSF48452 196 295 1.05E-6 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS11730 f0c6d8be37f2ede10e05885d2596aede 656 PANTHER PTHR23083 87 296 7.4E-12 T 14-09-2016 PAJ_RS03385 ba33f3cf7f952bfb86b73f97868ad23e 378 SUPERFAMILY SSF50952 24 369 1.44E-46 T 14-09-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 PAJ_RS03385 ba33f3cf7f952bfb86b73f97868ad23e 378 Pfam PF07995 Glucose / Sorbosone dehydrogenase 34 366 1.0E-130 T 14-09-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 PAJ_RS03385 ba33f3cf7f952bfb86b73f97868ad23e 378 Gene3D G3DSA:2.120.10.30 14 368 1.9E-105 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like PAJ_RS03385 ba33f3cf7f952bfb86b73f97868ad23e 378 PANTHER PTHR19328 19 368 1.1E-86 T 14-09-2016 PAJ_RS19790 02b95e0a68fbe71ad1218db5ad34693a 184 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 2 153 6.1E-52 T 14-09-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 PAJ_RS19790 02b95e0a68fbe71ad1218db5ad34693a 184 Pfam PF02470 MlaD protein 40 116 3.9E-19 T 14-09-2016 IPR003399 Mce/MlaD PAJ_RS19790 02b95e0a68fbe71ad1218db5ad34693a 184 PANTHER PTHR33371 1 153 6.0E-43 T 14-09-2016 PAJ_RS14920 91723d598b70680dbf8826f797036ec8 474 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 299 460 1.7E-35 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14920 91723d598b70680dbf8826f797036ec8 474 Pfam PF00990 Diguanylate cyclase, GGDEF domain 300 459 3.9E-35 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14920 91723d598b70680dbf8826f797036ec8 474 SMART SM00267 289 463 2.1E-48 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14920 91723d598b70680dbf8826f797036ec8 474 Gene3D G3DSA:3.30.70.270 302 460 7.8E-42 T 14-09-2016 PAJ_RS14920 91723d598b70680dbf8826f797036ec8 474 PANTHER PTHR10799:SF710 176 473 1.2E-20 T 14-09-2016 PAJ_RS14920 91723d598b70680dbf8826f797036ec8 474 SUPERFAMILY SSF55073 305 460 3.92E-36 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS14920 91723d598b70680dbf8826f797036ec8 474 PANTHER PTHR10799 176 473 1.2E-20 T 14-09-2016 PAJ_RS15280 59b3c0719da0e57791a07e630f0c9060 185 Gene3D G3DSA:3.40.30.10 22 176 3.6E-6 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS15280 59b3c0719da0e57791a07e630f0c9060 185 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 7 183 6.4E-89 T 14-09-2016 IPR006513 Conserved hypothetical protein CHP01626, YtfJ PAJ_RS15280 59b3c0719da0e57791a07e630f0c9060 185 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 23 181 1.1E-77 T 14-09-2016 IPR006513 Conserved hypothetical protein CHP01626, YtfJ PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 PANTHER PTHR24423 174 449 2.6E-58 T 14-09-2016 PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 PANTHER PTHR24423 1 12 2.6E-58 T 14-09-2016 PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 2.1E-12 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 2.1E-12 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 2.1E-12 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 Gene3D G3DSA:1.10.287.130 223 288 2.0E-19 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 SMART SM00387 332 440 4.9E-32 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 SMART SM00388 233 293 1.3E-11 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 439 2.4E-20 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 Gene3D G3DSA:3.30.565.10 292 444 8.9E-37 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 Pfam PF00672 HAMP domain 162 226 2.3E-12 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 SUPERFAMILY SSF47384 217 291 5.69E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 289 2.7E-10 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 SUPERFAMILY SSF55874 292 441 7.47E-36 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS16140 641c59b9b588bac8e6b05f3f87e587b9 454 SMART SM00304 180 232 5.9E-6 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 PANTHER PTHR33175 1 93 3.4E-49 T 14-09-2016 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 SMART SM00411 1 91 5.7E-42 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 PANTHER PTHR33175:SF5 1 93 3.4E-49 T 14-09-2016 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 3.2E-51 T 14-09-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 SUPERFAMILY SSF47729 1 91 2.06E-29 T 14-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 1.8E-29 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 30.253 T 14-09-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 Gene3D G3DSA:4.10.520.10 1 91 1.4E-33 T 14-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 14-09-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 5.1E-19 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 5.1E-19 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS03640 c41d18a84303593f1b718b56a106ca04 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 5.1E-19 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS06875 439b4dcf22a64cc4d0a0eb1301163ea9 683 Pfam PF02446 4-alpha-glucanotransferase 141 660 8.0E-126 T 14-09-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 PAJ_RS06875 439b4dcf22a64cc4d0a0eb1301163ea9 683 SUPERFAMILY SSF51445 603 675 2.87E-143 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS06875 439b4dcf22a64cc4d0a0eb1301163ea9 683 SUPERFAMILY SSF51445 135 565 2.87E-143 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS06875 439b4dcf22a64cc4d0a0eb1301163ea9 683 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 94 680 1.9E-221 T 14-09-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 PAJ_RS06875 439b4dcf22a64cc4d0a0eb1301163ea9 683 Gene3D G3DSA:3.20.20.80 134 568 2.5E-156 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS06875 439b4dcf22a64cc4d0a0eb1301163ea9 683 Gene3D G3DSA:3.20.20.80 607 681 2.5E-156 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS06875 439b4dcf22a64cc4d0a0eb1301163ea9 683 PANTHER PTHR32438:SF5 575 681 4.7E-201 T 14-09-2016 PAJ_RS06875 439b4dcf22a64cc4d0a0eb1301163ea9 683 PANTHER PTHR32438:SF5 72 556 4.7E-201 T 14-09-2016 PAJ_RS06875 439b4dcf22a64cc4d0a0eb1301163ea9 683 PANTHER PTHR32438 575 681 4.7E-201 T 14-09-2016 PAJ_RS06875 439b4dcf22a64cc4d0a0eb1301163ea9 683 PANTHER PTHR32438 72 556 4.7E-201 T 14-09-2016 PAJ_RS16565 1726f6dba34b91664ab3ce84bdf8614c 111 Pfam PF10625 Universal stress protein B (UspB) 1 106 1.8E-54 T 14-09-2016 IPR019598 Universal stress protein B PAJ_RS16565 1726f6dba34b91664ab3ce84bdf8614c 111 Hamap MF_01088 Universal stress protein B [uspB]. 1 107 37.189 T 14-09-2016 IPR019598 Universal stress protein B PAJ_RS13640 b3cadcf892638bda09fe9a81d9f53805 168 PANTHER PTHR23091 3 163 2.5E-17 T 14-09-2016 PAJ_RS13640 b3cadcf892638bda09fe9a81d9f53805 168 Pfam PF00583 Acetyltransferase (GNAT) family 62 139 4.2E-13 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS13640 b3cadcf892638bda09fe9a81d9f53805 168 SUPERFAMILY SSF55729 4 162 1.66E-26 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS13640 b3cadcf892638bda09fe9a81d9f53805 168 Gene3D G3DSA:3.40.630.30 3 163 2.8E-29 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 3 192 5.2E-82 T 14-09-2016 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 SUPERFAMILY SSF56655 2 326 2.54E-111 T 14-09-2016 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 Gene3D G3DSA:3.30.540.10 2 192 2.6E-78 T 14-09-2016 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 PANTHER PTHR11556 1 329 6.6E-181 T 14-09-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 268 280 - T 14-09-2016 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 27 54 6.1E-69 T 14-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 64 90 6.1E-69 T 14-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 203 230 6.1E-69 T 14-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 146 169 6.1E-69 T 14-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 177 200 6.1E-69 T 14-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 302 327 6.1E-69 T 14-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 PIRSF PIRSF500210 1 330 3.0E-123 T 14-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 PIRSF PIRSF000904 1 331 3.9E-119 T 14-09-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 Gene3D G3DSA:3.40.190.80 194 327 1.7E-54 T 14-09-2016 PAJ_RS15225 090fa82c57051a3c89edd1287aa6ea30 335 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 2 328 41.54 T 14-09-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 Gene3D G3DSA:3.40.640.10 164 379 1.3E-51 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 PANTHER PTHR11751 102 489 9.0E-124 T 14-09-2016 PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 84 8.3E-14 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 Pfam PF00155 Aminotransferase class I and II 158 461 1.8E-23 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 PANTHER PTHR11751:SF10 102 489 9.0E-124 T 14-09-2016 PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 SUPERFAMILY SSF53383 79 484 5.21E-85 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 SMART SM00345 25 84 3.3E-13 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 SUPERFAMILY SSF46785 17 87 8.68E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 2.3E-6 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 2.3E-6 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS10680 02bb5c8f135a35fa9c4835c652d188ac 497 Gene3D G3DSA:1.10.10.10 19 85 2.7E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00825 c68bef3bf75dd5764fb0d2cf1a6d5ee4 271 SUPERFAMILY SSF53850 33 271 1.41E-83 T 14-09-2016 PAJ_RS00825 c68bef3bf75dd5764fb0d2cf1a6d5ee4 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 271 9.0E-148 T 14-09-2016 IPR004872 Lipoprotein NlpA family PAJ_RS00825 c68bef3bf75dd5764fb0d2cf1a6d5ee4 271 PANTHER PTHR30429 3 271 3.9E-156 T 14-09-2016 IPR004872 Lipoprotein NlpA family PAJ_RS00825 c68bef3bf75dd5764fb0d2cf1a6d5ee4 271 PIRSF PIRSF002854 1 271 3.0E-107 T 14-09-2016 IPR004872 Lipoprotein NlpA family PAJ_RS00825 c68bef3bf75dd5764fb0d2cf1a6d5ee4 271 Gene3D G3DSA:3.40.190.10 30 162 1.4E-60 T 14-09-2016 PAJ_RS00825 c68bef3bf75dd5764fb0d2cf1a6d5ee4 271 PANTHER PTHR30429:SF1 3 271 3.9E-156 T 14-09-2016 PAJ_RS00825 c68bef3bf75dd5764fb0d2cf1a6d5ee4 271 Pfam PF03180 NLPA lipoprotein 33 271 1.6E-100 T 14-09-2016 IPR004872 Lipoprotein NlpA family PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 TIGRFAM TIGR00754 bfr: bacterioferritin 1 157 4.6E-80 T 14-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 Pfam PF00210 Ferritin-like domain 8 144 7.9E-39 T 14-09-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 SUPERFAMILY SSF47240 1 156 9.17E-53 T 14-09-2016 IPR009078 Ferritin-like superfamily PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 Gene3D G3DSA:1.20.1260.10 1 156 6.7E-65 T 14-09-2016 IPR012347 Ferritin-related PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 PIRSF PIRSF002560 1 157 2.8E-70 T 14-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 PANTHER PTHR30295:SF9 1 154 1.3E-51 T 14-09-2016 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 PANTHER PTHR30295 1 154 1.3E-51 T 14-09-2016 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 14-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 PRINTS PR00601 Bacterioferritin signature 44 64 1.2E-75 T 14-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 PRINTS PR00601 Bacterioferritin signature 3 22 1.2E-75 T 14-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 PRINTS PR00601 Bacterioferritin signature 107 127 1.2E-75 T 14-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 PRINTS PR00601 Bacterioferritin signature 86 106 1.2E-75 T 14-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 PRINTS PR00601 Bacterioferritin signature 23 43 1.2E-75 T 14-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 PRINTS PR00601 Bacterioferritin signature 65 85 1.2E-75 T 14-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS15870 c9d6b43c47e71581072b63ab210359f2 157 PRINTS PR00601 Bacterioferritin signature 128 149 1.2E-75 T 14-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS03755 e294dc18e8fcf82d60f8518b69519c21 317 PANTHER PTHR30024:SF11 1 310 5.8E-139 T 14-09-2016 PAJ_RS03755 e294dc18e8fcf82d60f8518b69519c21 317 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 30 309 6.1E-84 T 14-09-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 PAJ_RS03755 e294dc18e8fcf82d60f8518b69519c21 317 Gene3D G3DSA:3.40.190.10 111 233 4.0E-33 T 14-09-2016 PAJ_RS03755 e294dc18e8fcf82d60f8518b69519c21 317 PANTHER PTHR30024 1 310 5.8E-139 T 14-09-2016 PAJ_RS03755 e294dc18e8fcf82d60f8518b69519c21 317 SUPERFAMILY SSF53850 27 253 8.43E-50 T 14-09-2016 PAJ_RS03755 e294dc18e8fcf82d60f8518b69519c21 317 Pfam PF09084 NMT1/THI5 like 68 237 4.1E-15 T 14-09-2016 IPR015168 SsuA/THI5-like PAJ_RS03755 e294dc18e8fcf82d60f8518b69519c21 317 SMART SM00062 29 250 1.9E-29 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS16750 f60dd6b2b7862d764730b6fdfa5db043 449 PANTHER PTHR11662 29 445 2.1E-157 T 14-09-2016 PAJ_RS16750 f60dd6b2b7862d764730b6fdfa5db043 449 Gene3D G3DSA:1.20.1250.20 247 443 3.8E-25 T 14-09-2016 PAJ_RS16750 f60dd6b2b7862d764730b6fdfa5db043 449 SUPERFAMILY SSF103473 27 444 1.23E-80 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS16750 f60dd6b2b7862d764730b6fdfa5db043 449 Gene3D G3DSA:1.20.1250.20 35 227 7.9E-48 T 14-09-2016 PAJ_RS16750 f60dd6b2b7862d764730b6fdfa5db043 449 PANTHER PTHR11662:SF277 29 445 2.1E-157 T 14-09-2016 PAJ_RS16750 f60dd6b2b7862d764730b6fdfa5db043 449 PIRSF PIRSF002808 23 448 1.1E-33 T 14-09-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS16750 f60dd6b2b7862d764730b6fdfa5db043 449 Pfam PF07690 Major Facilitator Superfamily 45 406 8.5E-55 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 9 26 - T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 Gene3D G3DSA:3.50.50.60 3 291 7.5E-38 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 381 482 3.7E-13 T 14-09-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 Pfam PF01266 FAD dependent oxidoreductase 5 323 2.7E-44 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 6.8E-28 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 17 27 6.8E-28 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 4 16 6.8E-28 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 33 45 6.8E-28 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 78 90 6.8E-28 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 313 319 6.8E-28 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 PANTHER PTHR11985 5 490 1.3E-200 T 14-09-2016 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 SUPERFAMILY SSF51905 312 373 6.48E-35 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 SUPERFAMILY SSF51905 3 260 6.48E-35 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 PANTHER PTHR11985:SF1 5 490 1.3E-200 T 14-09-2016 PAJ_RS16215 f2b45e3701c91cf64cce108a02a104e9 501 SUPERFAMILY SSF54373 226 319 3.53E-7 T 14-09-2016 PAJ_RS04700 f640131539069e61472ee6a9af9d84cb 370 PANTHER PTHR11933 1 366 2.1E-219 T 14-09-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 PAJ_RS04700 f640131539069e61472ee6a9af9d84cb 370 SUPERFAMILY SSF52402 6 296 2.21E-57 T 14-09-2016 PAJ_RS04700 f640131539069e61472ee6a9af9d84cb 370 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 361 2.5E-157 T 14-09-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 PAJ_RS04700 f640131539069e61472ee6a9af9d84cb 370 Gene3D G3DSA:2.30.30.280 214 281 2.9E-33 T 14-09-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 PAJ_RS04700 f640131539069e61472ee6a9af9d84cb 370 PANTHER PTHR11933:SF10 1 366 2.1E-219 T 14-09-2016 PAJ_RS04700 f640131539069e61472ee6a9af9d84cb 370 Pfam PF03054 tRNA methyl transferase 7 361 1.1E-143 T 14-09-2016 PAJ_RS04700 f640131539069e61472ee6a9af9d84cb 370 Gene3D G3DSA:3.40.50.620 5 212 1.6E-98 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS04700 f640131539069e61472ee6a9af9d84cb 370 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 362 40.736 T 14-09-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 PAJ_RS04700 f640131539069e61472ee6a9af9d84cb 370 Gene3D G3DSA:2.40.30.10 283 364 1.9E-32 T 14-09-2016 PAJ_RS15195 084e9a2f1d61870a59212267d4da2593 298 Gene3D G3DSA:3.40.1190.20 2 294 3.5E-78 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS15195 084e9a2f1d61870a59212267d4da2593 298 Pfam PF00294 pfkB family carbohydrate kinase 1 285 1.3E-59 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS15195 084e9a2f1d61870a59212267d4da2593 298 SUPERFAMILY SSF53613 1 293 7.33E-65 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS15195 084e9a2f1d61870a59212267d4da2593 298 PANTHER PTHR10584 1 296 3.7E-130 T 14-09-2016 PAJ_RS15195 084e9a2f1d61870a59212267d4da2593 298 PANTHER PTHR10584:SF157 1 296 3.7E-130 T 14-09-2016 PAJ_RS15195 084e9a2f1d61870a59212267d4da2593 298 PRINTS PR00990 Ribokinase signature 209 220 1.2E-5 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS15195 084e9a2f1d61870a59212267d4da2593 298 PRINTS PR00990 Ribokinase signature 6 27 1.2E-5 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS15195 084e9a2f1d61870a59212267d4da2593 298 PRINTS PR00990 Ribokinase signature 33 52 1.2E-5 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS15195 084e9a2f1d61870a59212267d4da2593 298 Hamap MF_00999 Sulfofructose kinase. 1 298 58.749 T 14-09-2016 IPR030877 Sulfofructose kinase GO:0061594 MetaCyc: PWY-7446 PAJ_RS15195 084e9a2f1d61870a59212267d4da2593 298 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 238 251 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS06060 330344676ec3eaee10f60c12d06a4e68 58 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 34 53 3.9E-10 T 14-09-2016 IPR019626 Stress-induced protein, KGG, repeat PAJ_RS06060 330344676ec3eaee10f60c12d06a4e68 58 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 12 32 8.5E-8 T 14-09-2016 IPR019626 Stress-induced protein, KGG, repeat PAJ_RS06060 330344676ec3eaee10f60c12d06a4e68 58 PANTHER PTHR36569 7 53 2.9E-18 T 14-09-2016 PAJ_RS18145 b6af0b603db7c9aee3a92df1abef5ded 339 PANTHER PTHR30465:SF0 1 169 2.4E-150 T 14-09-2016 PAJ_RS18145 b6af0b603db7c9aee3a92df1abef5ded 339 PANTHER PTHR30465:SF0 194 337 2.4E-150 T 14-09-2016 PAJ_RS18145 b6af0b603db7c9aee3a92df1abef5ded 339 PANTHER PTHR30465 1 169 2.4E-150 T 14-09-2016 PAJ_RS18145 b6af0b603db7c9aee3a92df1abef5ded 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 336 9.1E-47 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS18145 b6af0b603db7c9aee3a92df1abef5ded 339 SUPERFAMILY SSF161098 90 160 1.41E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS18145 b6af0b603db7c9aee3a92df1abef5ded 339 SUPERFAMILY SSF161098 200 323 1.41E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS18145 b6af0b603db7c9aee3a92df1abef5ded 339 PANTHER PTHR30465 194 337 2.4E-150 T 14-09-2016 PAJ_RS18145 b6af0b603db7c9aee3a92df1abef5ded 339 Gene3D G3DSA:1.10.3720.10 203 332 1.8E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS18145 b6af0b603db7c9aee3a92df1abef5ded 339 Gene3D G3DSA:1.10.3720.10 88 163 1.8E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS06815 afecb990ff0524c4191e43a94f92c1e0 102 Pfam PF07338 Protein of unknown function (DUF1471) 35 92 7.0E-15 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS06815 afecb990ff0524c4191e43a94f92c1e0 102 SUPERFAMILY SSF159871 26 93 2.09E-11 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS06815 afecb990ff0524c4191e43a94f92c1e0 102 Gene3D G3DSA:3.30.1660.10 26 92 7.8E-10 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS14510 9f96585937ebe85937545d9988c65ace 270 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 267 1.9E-39 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS14510 9f96585937ebe85937545d9988c65ace 270 SMART SM00062 45 269 1.0E-30 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS14510 9f96585937ebe85937545d9988c65ace 270 Gene3D G3DSA:3.40.190.10 43 131 4.5E-28 T 14-09-2016 PAJ_RS14510 9f96585937ebe85937545d9988c65ace 270 Gene3D G3DSA:3.40.190.10 228 267 4.5E-28 T 14-09-2016 PAJ_RS14510 9f96585937ebe85937545d9988c65ace 270 PANTHER PTHR18966:SF243 32 267 5.1E-98 T 14-09-2016 PAJ_RS14510 9f96585937ebe85937545d9988c65ace 270 PANTHER PTHR18966 32 267 5.1E-98 T 14-09-2016 PAJ_RS14510 9f96585937ebe85937545d9988c65ace 270 Gene3D G3DSA:3.40.190.10 140 215 2.8E-5 T 14-09-2016 PAJ_RS14510 9f96585937ebe85937545d9988c65ace 270 SUPERFAMILY SSF53850 18 267 3.7E-49 T 14-09-2016 PAJ_RS04070 2de65d15a7dc6773608b8cb9695560cd 243 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 22 104 1.1E-12 T 14-09-2016 IPR014054 Bacteriophage regulatory protein, Rha family PAJ_RS04070 2de65d15a7dc6773608b8cb9695560cd 243 Pfam PF03374 Phage antirepressor protein KilAC domain 136 234 6.1E-27 T 14-09-2016 IPR005039 Antirepressor protein, C-terminal GO:0003677 PAJ_RS06405 a6861b457b3507a1ac59e279e994abe6 496 PANTHER PTHR38464:SF1 1 496 6.2E-215 T 14-09-2016 PAJ_RS06405 a6861b457b3507a1ac59e279e994abe6 496 SUPERFAMILY SSF50443 325 494 9.42E-69 T 14-09-2016 IPR004216 L-fucose/L-arabinose isomerase, C-terminal PAJ_RS06405 a6861b457b3507a1ac59e279e994abe6 496 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 2 299 4.0E-130 T 14-09-2016 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4|UniPathway: UPA00145 PAJ_RS06405 a6861b457b3507a1ac59e279e994abe6 496 PANTHER PTHR38464 1 496 6.2E-215 T 14-09-2016 PAJ_RS06405 a6861b457b3507a1ac59e279e994abe6 496 PIRSF PIRSF001478 1 496 3.2E-242 T 14-09-2016 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4|UniPathway: UPA00145 PAJ_RS06405 a6861b457b3507a1ac59e279e994abe6 496 Pfam PF11762 L-arabinose isomerase C-terminal domain 359 472 5.5E-45 T 14-09-2016 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4|UniPathway: UPA00145 PAJ_RS06405 a6861b457b3507a1ac59e279e994abe6 496 Pfam PF02610 L-arabinose isomerase 2 355 1.2E-170 T 14-09-2016 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4|UniPathway: UPA00145 PAJ_RS06405 a6861b457b3507a1ac59e279e994abe6 496 SUPERFAMILY SSF53743 2 322 5.49E-116 T 14-09-2016 IPR009015 L-fucose isomerase, N-terminal/central domain GO:0005737|GO:0005996|GO:0016861 PAJ_RS06405 a6861b457b3507a1ac59e279e994abe6 496 Hamap MF_00519 L-arabinose isomerase [araA]. 1 473 61.99 T 14-09-2016 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4|UniPathway: UPA00145 PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 Pfam PF03473 MOSC domain 139 263 1.9E-28 T 14-09-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 SUPERFAMILY SSF54292 287 369 1.3E-20 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 298 362 7.6E-12 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 SUPERFAMILY SSF141673 4 131 6.67E-29 T 14-09-2016 PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 Pfam PF03476 MOSC N-terminal beta barrel domain 1 115 3.2E-27 T 14-09-2016 IPR005303 MOSC, N-terminal beta barrel PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 SUPERFAMILY SSF50800 147 265 7.32E-17 T 14-09-2016 IPR011037 Pyruvate kinase-like, insert domain PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 SUPERFAMILY SSF50800 3 50 7.32E-17 T 14-09-2016 IPR011037 Pyruvate kinase-like, insert domain PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 PANTHER PTHR14237:SF3 3 268 6.9E-82 T 14-09-2016 PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 PANTHER PTHR14237 3 268 6.9E-82 T 14-09-2016 PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 324 332 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PAJ_RS03785 85fea6376b52db0678032ec17b7469f5 369 Gene3D G3DSA:3.10.20.30 282 368 4.6E-22 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 258 420 2.3E-40 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 SMART SM00052 432 678 1.5E-116 T 14-09-2016 IPR001633 EAL domain PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 Pfam PF03707 Bacterial signalling protein N terminal repeat 115 165 3.1E-15 T 14-09-2016 IPR005330 MHYT domain PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 Pfam PF03707 Bacterial signalling protein N terminal repeat 183 244 1.1E-9 T 14-09-2016 IPR005330 MHYT domain PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 Pfam PF03707 Bacterial signalling protein N terminal repeat 52 110 9.0E-18 T 14-09-2016 IPR005330 MHYT domain PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 Gene3D G3DSA:3.30.70.270 264 427 1.6E-55 T 14-09-2016 PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 Pfam PF00990 Diguanylate cyclase, GGDEF domain 262 417 8.6E-46 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 PANTHER PTHR10799 118 242 3.1E-78 T 14-09-2016 PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 PANTHER PTHR10799 295 532 3.1E-78 T 14-09-2016 PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 PANTHER PTHR10799:SF710 118 242 3.1E-78 T 14-09-2016 PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 PANTHER PTHR10799:SF710 295 532 3.1E-78 T 14-09-2016 PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 SMART SM00267 251 422 1.6E-58 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 SUPERFAMILY SSF141868 438 681 3.27E-89 T 14-09-2016 IPR001633 EAL domain PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 Gene3D G3DSA:3.20.20.450 435 682 2.2E-99 T 14-09-2016 IPR001633 EAL domain PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 SUPERFAMILY SSF55073 267 424 1.1E-47 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS14325 c2966b34d270bcc8d2863b4cd0d52b6c 698 Pfam PF00563 EAL domain 439 673 1.3E-73 T 14-09-2016 IPR001633 EAL domain PAJ_RS07715 3f9929d33a710abbbccc587fb748553d 396 PIRSF PIRSF001413 1 396 2.1E-173 T 14-09-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PAJ_RS07715 3f9929d33a710abbbccc587fb748553d 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 7 388 1.5E-191 T 14-09-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PAJ_RS07715 3f9929d33a710abbbccc587fb748553d 396 PANTHER PTHR10314 6 388 8.6E-228 T 14-09-2016 PAJ_RS07715 3f9929d33a710abbbccc587fb748553d 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 377 5.6E-54 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS07715 3f9929d33a710abbbccc587fb748553d 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.659 T 14-09-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PAJ_RS07715 3f9929d33a710abbbccc587fb748553d 396 Gene3D G3DSA:3.40.50.1100 96 175 3.2E-22 T 14-09-2016 PAJ_RS07715 3f9929d33a710abbbccc587fb748553d 396 SUPERFAMILY SSF53686 4 389 5.89E-146 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS07715 3f9929d33a710abbbccc587fb748553d 396 PANTHER PTHR10314:SF3 6 388 8.6E-228 T 14-09-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PAJ_RS07715 3f9929d33a710abbbccc587fb748553d 396 Gene3D G3DSA:3.40.50.1100 176 391 4.9E-95 T 14-09-2016 PAJ_RS07715 3f9929d33a710abbbccc587fb748553d 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 14-09-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 Pfam PF00535 Glycosyl transferase family 2 130 301 1.8E-36 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 Pfam PF03552 Cellulose synthase 302 516 6.1E-9 T 14-09-2016 IPR005150 Cellulose synthase GO:0016020|GO:0016760|GO:0030244 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 Gene3D G3DSA:3.90.550.10 127 362 6.9E-23 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 SUPERFAMILY SSF141371 552 644 3.14E-5 T 14-09-2016 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 TIGRFAM TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming) 7 674 4.2E-265 T 14-09-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PANTHER PTHR10587 33 568 3.6E-84 T 14-09-2016 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PANTHER PTHR10587:SF94 33 568 3.6E-84 T 14-09-2016 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 SUPERFAMILY SSF53448 126 409 2.25E-48 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PRINTS PR01439 Cellulose synthase subunit A signature 407 426 1.3E-60 T 14-09-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PRINTS PR01439 Cellulose synthase subunit A signature 217 241 1.3E-60 T 14-09-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PRINTS PR01439 Cellulose synthase subunit A signature 447 466 1.3E-60 T 14-09-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PRINTS PR01439 Cellulose synthase subunit A signature 523 544 1.3E-60 T 14-09-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PRINTS PR01439 Cellulose synthase subunit A signature 378 404 1.3E-60 T 14-09-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PRINTS PR01439 Cellulose synthase subunit A signature 136 155 1.3E-60 T 14-09-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PRINTS PR01439 Cellulose synthase subunit A signature 487 511 1.3E-60 T 14-09-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PRINTS PR01439 Cellulose synthase subunit A signature 53 73 1.3E-60 T 14-09-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PAJ_RS18180 7d0bfd8a4e9de64ace3c73f3b21af2da 701 PRINTS PR01439 Cellulose synthase subunit A signature 81 106 1.3E-60 T 14-09-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 PANTHER PTHR18968:SF12 1 573 0.0 T 14-09-2016 PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 Gene3D G3DSA:3.40.50.970 1 173 1.3E-49 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 319 3.3E-29 T 14-09-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 SUPERFAMILY SSF52518 2 178 2.32E-41 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 SUPERFAMILY SSF52518 357 559 1.79E-63 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 PANTHER PTHR18968 1 573 0.0 T 14-09-2016 PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 2.6E-40 T 14-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 Gene3D G3DSA:3.40.50.1220 186 342 6.9E-41 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 SUPERFAMILY SSF52467 182 351 1.51E-41 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 526 4.9E-41 T 14-09-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PAJ_RS03515 d4d2f7f60fa1ac68f52ea3689c0a5218 573 Gene3D G3DSA:3.40.50.970 353 553 1.1E-64 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS03000 a63ffc12b2ee80f238941f104599bd8e 81 Pfam PF02597 ThiS family 4 81 1.4E-19 T 14-09-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 PAJ_RS03000 a63ffc12b2ee80f238941f104599bd8e 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 1.0E-22 T 14-09-2016 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 UniPathway: UPA00344 PAJ_RS03000 a63ffc12b2ee80f238941f104599bd8e 81 PANTHER PTHR33359 1 81 1.1E-25 T 14-09-2016 PAJ_RS03000 a63ffc12b2ee80f238941f104599bd8e 81 Gene3D G3DSA:3.10.20.30 1 81 3.9E-25 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS03000 a63ffc12b2ee80f238941f104599bd8e 81 SUPERFAMILY SSF54285 1 81 1.38E-22 T 14-09-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp PAJ_RS12845 f303d972ca02e44f22080ce25ffcba68 238 Gene3D G3DSA:3.90.550.10 9 235 8.4E-71 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS12845 f303d972ca02e44f22080ce25ffcba68 238 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 9 232 29.964 T 14-09-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS12845 f303d972ca02e44f22080ce25ffcba68 238 PANTHER PTHR32125:SF4 10 238 1.9E-75 T 14-09-2016 PAJ_RS12845 f303d972ca02e44f22080ce25ffcba68 238 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 104 111 - T 14-09-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS12845 f303d972ca02e44f22080ce25ffcba68 238 PANTHER PTHR32125 10 238 1.9E-75 T 14-09-2016 PAJ_RS12845 f303d972ca02e44f22080ce25ffcba68 238 SUPERFAMILY SSF53448 10 230 6.53E-60 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS12845 f303d972ca02e44f22080ce25ffcba68 238 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 230 6.7E-83 T 14-09-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS12845 f303d972ca02e44f22080ce25ffcba68 238 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 228 4.9E-73 T 14-09-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS19085 ddaeee7bf7c8994987a5cb1d53dd1fa9 550 TIGRFAM TIGR02711 symport_actP: cation/acetate symporter ActP 4 550 0.0 T 14-09-2016 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 PAJ_RS19085 ddaeee7bf7c8994987a5cb1d53dd1fa9 550 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 178 203 - T 14-09-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 PAJ_RS19085 ddaeee7bf7c8994987a5cb1d53dd1fa9 550 PANTHER PTHR11819:SF13 32 539 4.6E-287 T 14-09-2016 PAJ_RS19085 ddaeee7bf7c8994987a5cb1d53dd1fa9 550 Pfam PF00474 Sodium:solute symporter family 63 469 4.0E-132 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS19085 ddaeee7bf7c8994987a5cb1d53dd1fa9 550 PANTHER PTHR11819 32 539 4.6E-287 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS19085 ddaeee7bf7c8994987a5cb1d53dd1fa9 550 Hamap MF_01426 Cation/acetate symporter ActP [actP]. 1 550 53.421 T 14-09-2016 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 PAJ_RS19085 ddaeee7bf7c8994987a5cb1d53dd1fa9 550 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 63 468 3.1E-62 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS19085 ddaeee7bf7c8994987a5cb1d53dd1fa9 550 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 451 471 - T 14-09-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 PAJ_RS07955 0e18ca77216328d16be055730d1fdf87 644 Pfam PF08298 PrkA AAA domain 20 380 3.8E-177 T 14-09-2016 IPR013153 PrkA AAA domain PAJ_RS07955 0e18ca77216328d16be055730d1fdf87 644 SUPERFAMILY SSF52540 75 145 6.21E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07955 0e18ca77216328d16be055730d1fdf87 644 SUPERFAMILY SSF52540 246 368 6.21E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07955 0e18ca77216328d16be055730d1fdf87 644 PANTHER PTHR30267:SF2 1 644 7.4E-304 T 14-09-2016 PAJ_RS07955 0e18ca77216328d16be055730d1fdf87 644 Gene3D G3DSA:3.40.50.300 75 170 4.3E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07955 0e18ca77216328d16be055730d1fdf87 644 Gene3D G3DSA:3.40.50.300 243 329 4.3E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07955 0e18ca77216328d16be055730d1fdf87 644 PANTHER PTHR30267 1 644 7.4E-304 T 14-09-2016 PAJ_RS07955 0e18ca77216328d16be055730d1fdf87 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 9.2E-75 T 14-09-2016 IPR010650 PrkA C-terminal domain PAJ_RS07955 0e18ca77216328d16be055730d1fdf87 644 SMART SM00763 19 380 2.2E-214 T 14-09-2016 IPR013153 PrkA AAA domain PAJ_RS07955 0e18ca77216328d16be055730d1fdf87 644 PIRSF PIRSF000549 1 644 6.2E-290 T 14-09-2016 IPR016230 Serine-protein kinase, PrkA GO:0004672 PAJ_RS10415 a6f183dd9561e96acdcee41f964c213a 275 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 197 273 3.5E-18 T 14-09-2016 IPR006260 TonB, C-terminal GO:0006810 PAJ_RS10415 a6f183dd9561e96acdcee41f964c213a 275 PRINTS PR01374 Gram-negative bacterial tonB protein signature 191 212 1.6E-7 T 14-09-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 PAJ_RS10415 a6f183dd9561e96acdcee41f964c213a 275 PRINTS PR01374 Gram-negative bacterial tonB protein signature 127 137 1.6E-7 T 14-09-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 PAJ_RS10415 a6f183dd9561e96acdcee41f964c213a 275 PRINTS PR01374 Gram-negative bacterial tonB protein signature 212 230 1.6E-7 T 14-09-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 PAJ_RS10415 a6f183dd9561e96acdcee41f964c213a 275 PANTHER PTHR33446 39 274 3.1E-14 T 14-09-2016 PAJ_RS10415 a6f183dd9561e96acdcee41f964c213a 275 SUPERFAMILY SSF74653 195 271 4.05E-22 T 14-09-2016 PAJ_RS10415 a6f183dd9561e96acdcee41f964c213a 275 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 195 273 7.8E-22 T 14-09-2016 IPR006260 TonB, C-terminal GO:0006810 PAJ_RS10415 a6f183dd9561e96acdcee41f964c213a 275 Gene3D G3DSA:3.30.1150.10 192 274 2.4E-16 T 14-09-2016 PAJ_RS05030 9d7b70ea95c42e2418fae4e3999ef719 200 SUPERFAMILY SSF56349 15 197 4.71E-33 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PAJ_RS05030 9d7b70ea95c42e2418fae4e3999ef719 200 Pfam PF00589 Phage integrase family 34 184 1.3E-15 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS05030 9d7b70ea95c42e2418fae4e3999ef719 200 PANTHER PTHR30349 37 194 1.4E-13 T 14-09-2016 PAJ_RS05030 9d7b70ea95c42e2418fae4e3999ef719 200 Gene3D G3DSA:1.10.443.10 14 184 5.1E-25 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS05710 dc93d47bd12b2f1b1ec06cfdf699c5f3 400 Gene3D G3DSA:1.20.1250.20 213 393 1.0E-6 T 14-09-2016 PAJ_RS05710 dc93d47bd12b2f1b1ec06cfdf699c5f3 400 Gene3D G3DSA:1.20.1250.20 15 181 1.3E-25 T 14-09-2016 PAJ_RS05710 dc93d47bd12b2f1b1ec06cfdf699c5f3 400 PANTHER PTHR23502 8 357 1.3E-105 T 14-09-2016 PAJ_RS05710 dc93d47bd12b2f1b1ec06cfdf699c5f3 400 Pfam PF07690 Major Facilitator Superfamily 17 359 1.4E-39 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS05710 dc93d47bd12b2f1b1ec06cfdf699c5f3 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 9 388 2.1E-86 T 14-09-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 PAJ_RS05710 dc93d47bd12b2f1b1ec06cfdf699c5f3 400 PANTHER PTHR23502:SF19 8 357 1.3E-105 T 14-09-2016 PAJ_RS05710 dc93d47bd12b2f1b1ec06cfdf699c5f3 400 SUPERFAMILY SSF103473 3 387 2.62E-57 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.395 T 14-09-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 14-09-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Gene3D G3DSA:1.10.1030.10 400 538 1.6E-51 T 14-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Pfam PF02142 MGS-like domain 957 1041 1.7E-18 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 SUPERFAMILY SSF52440 1 127 2.73E-50 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 SMART SM00851 956 1042 3.1E-31 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 SUPERFAMILY SSF48108 396 554 7.72E-53 T 14-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 4.6E-40 T 14-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 PANTHER PTHR11405:SF5 1 1071 0.0 T 14-09-2016 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 SMART SM01096 424 547 7.7E-75 T 14-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Gene3D G3DSA:3.40.50.1380 938 1072 1.4E-39 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Gene3D G3DSA:3.30.1490.20 687 745 7.8E-25 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 SUPERFAMILY SSF52440 557 676 2.3E-49 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 4.4E-65 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 4.4E-65 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 4.4E-65 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 4.4E-65 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 4.4E-65 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 4.4E-65 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 4.4E-65 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1063 13.221 T 14-09-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Gene3D G3DSA:3.30.470.20 746 934 3.1E-82 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Gene3D G3DSA:3.30.470.20 200 399 1.4E-76 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Gene3D G3DSA:3.40.50.20 3 108 1.4E-46 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 PANTHER PTHR11405 1 1071 0.0 T 14-09-2016 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 876 4.3E-38 T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 5.4E-76 T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 SUPERFAMILY SSF56059 674 934 4.6E-105 T 14-09-2016 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 SUPERFAMILY SSF52335 938 1071 5.63E-35 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Gene3D G3DSA:3.40.50.20 539 663 7.7E-62 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 Gene3D G3DSA:3.30.1490.20 141 199 2.8E-28 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 839 846 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS00100 62a21ec171f4da43a95510c8b73cd84c 1076 SUPERFAMILY SSF56059 128 401 6.19E-110 T 14-09-2016 PAJ_RS18955 0dc0792db4c7badc513c48d0811585a7 468 SUPERFAMILY SSF48024 22 133 2.09E-38 T 14-09-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 PAJ_RS18955 0dc0792db4c7badc513c48d0811585a7 468 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 461 1.1E-173 T 14-09-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 PAJ_RS18955 0dc0792db4c7badc513c48d0811585a7 468 Pfam PF03796 DnaB-like helicase C terminal domain 203 459 9.1E-113 T 14-09-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 PAJ_RS18955 0dc0792db4c7badc513c48d0811585a7 468 Pfam PF00772 DnaB-like helicase N terminal domain 24 125 2.0E-35 T 14-09-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 PAJ_RS18955 0dc0792db4c7badc513c48d0811585a7 468 PANTHER PTHR30153 8 468 3.8E-222 T 14-09-2016 PAJ_RS18955 0dc0792db4c7badc513c48d0811585a7 468 Gene3D G3DSA:1.10.860.10 24 126 6.6E-40 T 14-09-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal PAJ_RS18955 0dc0792db4c7badc513c48d0811585a7 468 Gene3D G3DSA:3.40.50.300 189 461 4.7E-103 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18955 0dc0792db4c7badc513c48d0811585a7 468 SMART SM00382 220 426 2.8E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS18955 0dc0792db4c7badc513c48d0811585a7 468 SUPERFAMILY SSF52540 201 272 3.6E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18955 0dc0792db4c7badc513c48d0811585a7 468 SUPERFAMILY SSF52540 299 453 3.6E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12645 a67f6fff2085cbc4ba825c4958740886 243 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 243 46.961 T 14-09-2016 IPR017689 Outer membrane protein assembly factor BamD PAJ_RS12645 a67f6fff2085cbc4ba825c4958740886 243 PANTHER PTHR37423 1 243 6.0E-112 T 14-09-2016 PAJ_RS12645 a67f6fff2085cbc4ba825c4958740886 243 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 241 1.6E-84 T 14-09-2016 IPR017689 Outer membrane protein assembly factor BamD PAJ_RS12645 a67f6fff2085cbc4ba825c4958740886 243 SUPERFAMILY SSF48452 26 105 6.4E-8 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS12645 a67f6fff2085cbc4ba825c4958740886 243 Pfam PF13525 Outer membrane lipoprotein 28 236 5.3E-80 T 14-09-2016 PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 Pfam PF07687 Peptidase dimerisation domain 217 316 5.7E-5 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 PIRSF PIRSF001235 7 417 8.0E-130 T 14-09-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 Gene3D G3DSA:3.40.630.10 6 230 7.5E-102 T 14-09-2016 PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 Gene3D G3DSA:3.40.630.10 356 415 7.5E-102 T 14-09-2016 PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 PANTHER PTHR32494 2 416 5.8E-165 T 14-09-2016 PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 SUPERFAMILY SSF53187 341 414 7.43E-77 T 14-09-2016 PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 SUPERFAMILY SSF53187 9 228 7.43E-77 T 14-09-2016 PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 20 412 2.2E-113 T 14-09-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 SUPERFAMILY SSF55031 218 333 5.83E-27 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 Pfam PF01546 Peptidase family M20/M25/M40 82 410 4.2E-26 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 Gene3D G3DSA:3.30.70.360 231 328 8.1E-35 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS01040 7c21677771c10ca6dc15ced9e0e093d0 417 PANTHER PTHR32494:SF5 2 416 5.8E-165 T 14-09-2016 PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 1.4E-52 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 SUPERFAMILY SSF52283 2 135 1.34E-45 T 14-09-2016 PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 SUPERFAMILY SSF51735 102 298 1.21E-53 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 PANTHER PTHR10996 1 328 1.6E-171 T 14-09-2016 PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 14-09-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 PANTHER PTHR10996:SF161 1 328 1.6E-171 T 14-09-2016 PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 Gene3D G3DSA:3.40.50.720 1 137 1.8E-51 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 328 2.4E-33 T 14-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PAJ_RS07415 7993d9cc2ccb2531d111545af4fceb73 330 Gene3D G3DSA:3.40.50.720 138 305 2.4E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS11670 d8d5bd8d0c1fe1eb3faec1f483a8717b 544 PANTHER PTHR30425:SF7 184 542 4.4E-195 T 14-09-2016 PAJ_RS11670 d8d5bd8d0c1fe1eb3faec1f483a8717b 544 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 312 540 2.6E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11670 d8d5bd8d0c1fe1eb3faec1f483a8717b 544 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 273 536 3.2E-73 T 14-09-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 PAJ_RS11670 d8d5bd8d0c1fe1eb3faec1f483a8717b 544 SUPERFAMILY SSF161098 274 530 7.06E-37 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11670 d8d5bd8d0c1fe1eb3faec1f483a8717b 544 PANTHER PTHR30425 184 542 4.4E-195 T 14-09-2016 PAJ_RS11670 d8d5bd8d0c1fe1eb3faec1f483a8717b 544 Gene3D G3DSA:1.10.3720.10 19 42 4.8E-53 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11670 d8d5bd8d0c1fe1eb3faec1f483a8717b 544 Gene3D G3DSA:1.10.3720.10 271 540 4.8E-53 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07285 38476d9acdf95b3449e0b3c95c5d60a9 531 PANTHER PTHR30290:SF14 1 531 3.0E-202 T 14-09-2016 PAJ_RS07285 38476d9acdf95b3449e0b3c95c5d60a9 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 68 448 1.1E-101 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS07285 38476d9acdf95b3449e0b3c95c5d60a9 531 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 74 96 - T 14-09-2016 IPR023765 Solute-binding protein family 5, conserved site PAJ_RS07285 38476d9acdf95b3449e0b3c95c5d60a9 531 PIRSF PIRSF002741 20 531 2.0E-118 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS07285 38476d9acdf95b3449e0b3c95c5d60a9 531 PANTHER PTHR30290 1 531 3.0E-202 T 14-09-2016 PAJ_RS07285 38476d9acdf95b3449e0b3c95c5d60a9 531 SUPERFAMILY SSF53850 24 529 5.52E-153 T 14-09-2016 PAJ_RS07285 38476d9acdf95b3449e0b3c95c5d60a9 531 Gene3D G3DSA:3.90.76.10 34 214 4.0E-45 T 14-09-2016 PAJ_RS07285 38476d9acdf95b3449e0b3c95c5d60a9 531 Gene3D G3DSA:3.10.105.10 287 500 3.3E-69 T 14-09-2016 PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 Pfam PF08241 Methyltransferase domain 497 621 4.2E-12 T 14-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 Pfam PF03781 Sulfatase-modifying factor enzyme 1 188 441 1.2E-28 T 14-09-2016 IPR005532 Sulfatase-modifying factor enzyme PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 SUPERFAMILY SSF56436 187 443 1.95E-55 T 14-09-2016 IPR016187 C-type lectin fold PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 PANTHER PTHR23150:SF24 1 484 1.3E-181 T 14-09-2016 PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 TIGRFAM TIGR04344 ovoA_Nterm: 5-histidylcysteine sulfoxide synthase 2 441 4.8E-211 T 14-09-2016 IPR027577 5-histidylcysteine sulfoxide synthase PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 PANTHER PTHR23150 1 484 1.3E-181 T 14-09-2016 PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 Gene3D G3DSA:3.90.1580.10 186 446 4.4E-53 T 14-09-2016 IPR005532 Sulfatase-modifying factor enzyme PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 TIGRFAM TIGR04345 ovoA_Cterm: putative 4-mercaptohistidine N1-methyltranferase 454 694 1.1E-96 T 14-09-2016 IPR027625 Putative 4-mercaptohistidine N1-methyltranferase, OvoA C-terminal domain PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 Gene3D G3DSA:3.40.50.150 460 532 1.0E-31 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 Gene3D G3DSA:3.40.50.150 566 665 1.0E-31 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 Pfam PF12867 DinB superfamily 18 153 2.8E-9 T 14-09-2016 IPR024775 DinB-like domain PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 SUPERFAMILY SSF53335 566 644 1.04E-26 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS17595 75fa3a2a51117a3bf08bb928741cd3a3 695 SUPERFAMILY SSF53335 452 535 1.04E-26 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 SUPERFAMILY SSF52540 331 580 4.54E-95 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 SUPERFAMILY SSF90123 14 325 7.19E-74 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 PANTHER PTHR24221:SF188 3 582 0.0 T 14-09-2016 PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 581 8.3E-264 T 14-09-2016 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 Gene3D G3DSA:1.20.1560.10 13 325 1.4E-69 T 14-09-2016 PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 Pfam PF00664 ABC transporter transmembrane region 28 297 1.1E-58 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 SMART SM00382 368 555 1.5E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 PANTHER PTHR24221 3 582 0.0 T 14-09-2016 PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 Gene3D G3DSA:3.40.50.300 342 574 7.7E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03650 f48faa669ae6957972c55629aaa934a1 582 Pfam PF00005 ABC transporter 359 509 1.0E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06605 944194ce64340dc84ce02024f0de9ff4 280 PIRSF PIRSF001359 1 280 4.2E-88 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS06605 944194ce64340dc84ce02024f0de9ff4 280 Gene3D G3DSA:3.20.20.70 1 279 4.2E-92 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS06605 944194ce64340dc84ce02024f0de9ff4 280 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 279 5.9E-89 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS06605 944194ce64340dc84ce02024f0de9ff4 280 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 279 8.2E-81 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS06605 944194ce64340dc84ce02024f0de9ff4 280 SUPERFAMILY SSF51569 3 279 8.97E-86 T 14-09-2016 PAJ_RS06605 944194ce64340dc84ce02024f0de9ff4 280 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 132 143 - T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS06605 944194ce64340dc84ce02024f0de9ff4 280 PANTHER PTHR30304 1 280 9.1E-75 T 14-09-2016 PAJ_RS10820 af8a88b7ba104e90ce0b40c510227776 299 PANTHER PTHR12715:SF12 4 299 2.0E-95 T 14-09-2016 PAJ_RS10820 af8a88b7ba104e90ce0b40c510227776 299 SUPERFAMILY SSF103481 186 284 1.7E-17 T 14-09-2016 PAJ_RS10820 af8a88b7ba104e90ce0b40c510227776 299 SUPERFAMILY SSF103481 41 138 9.29E-11 T 14-09-2016 PAJ_RS10820 af8a88b7ba104e90ce0b40c510227776 299 PANTHER PTHR12715 4 299 2.0E-95 T 14-09-2016 PAJ_RS10820 af8a88b7ba104e90ce0b40c510227776 299 Pfam PF00892 EamA-like transporter family 151 280 3.7E-21 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS10820 af8a88b7ba104e90ce0b40c510227776 299 Pfam PF00892 EamA-like transporter family 6 135 3.5E-18 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 PANTHER PTHR11573 7 681 9.3E-246 T 14-09-2016 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 SUPERFAMILY SSF51998 154 677 3.36E-182 T 14-09-2016 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 79 150 8.1E-11 T 14-09-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 83 675 6.6E-155 T 14-09-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 545 567 - T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 405 428 5.2E-35 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 444 466 5.2E-35 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 556 583 5.2E-35 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 230 249 5.2E-35 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 472 495 5.2E-35 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 361 372 5.2E-35 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 1 693 0.0 T 14-09-2016 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 Pfam PF02867 Ribonucleotide reductase, barrel domain 155 672 1.1E-138 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 Pfam PF08343 Ribonucleotide reductase N-terminal 1 76 2.1E-25 T 14-09-2016 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 SUPERFAMILY SSF48168 1 153 1.83E-53 T 14-09-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 Gene3D G3DSA:3.20.70.20 329 492 1.3E-54 T 14-09-2016 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 Gene3D G3DSA:3.20.70.20 121 276 1.3E-54 T 14-09-2016 PAJ_RS12510 3461da1cfc804f049c06029583650166 693 Gene3D G3DSA:3.20.70.20 556 670 1.3E-54 T 14-09-2016 PAJ_RS19380 86d631deaf9cdcf7a28cf5a985d96c7f 315 PANTHER PTHR31438:SF5 4 312 8.3E-145 T 14-09-2016 PAJ_RS19380 86d631deaf9cdcf7a28cf5a985d96c7f 315 SUPERFAMILY SSF55729 116 306 3.64E-59 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS19380 86d631deaf9cdcf7a28cf5a985d96c7f 315 Gene3D G3DSA:3.40.630.30 123 313 9.7E-70 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS19380 86d631deaf9cdcf7a28cf5a985d96c7f 315 SMART SM01006 146 193 2.2E-16 T 14-09-2016 IPR019432 Siderophore biosynthesis protein, conserved domain PAJ_RS19380 86d631deaf9cdcf7a28cf5a985d96c7f 315 PANTHER PTHR31438 4 312 8.3E-145 T 14-09-2016 PAJ_RS19380 86d631deaf9cdcf7a28cf5a985d96c7f 315 Pfam PF13523 Acetyltransferase (GNAT) domain 149 294 2.0E-51 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 52 66 5.1E-6 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 11 25 5.1E-6 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 82 98 5.1E-6 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 Pfam PF00117 Glutamine amidotransferase class-I 13 201 1.8E-40 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PRINTS PR00097 Anthranilate synthase component II signature 55 64 1.4E-6 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PRINTS PR00097 Anthranilate synthase component II signature 178 191 1.4E-6 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PRINTS PR00097 Anthranilate synthase component II signature 82 93 1.4E-6 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PANTHER PTHR11922:SF2 1 523 1.5E-290 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 55 64 1.2E-7 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 82 93 1.2E-7 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 178 191 1.2E-7 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 Gene3D G3DSA:3.30.300.10 402 526 1.4E-53 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 Gene3D G3DSA:3.40.50.620 224 400 7.2E-56 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 SUPERFAMILY SSF54810 406 526 1.83E-51 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 213 526 3.9E-154 T 14-09-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 11 206 3.4E-82 T 14-09-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 SUPERFAMILY SSF52317 6 205 2.02E-57 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 Pfam PF00958 GMP synthase C terminal domain 434 525 7.0E-44 T 14-09-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 Pfam PF02540 NAD synthase 224 255 1.2E-6 T 14-09-2016 IPR022310 NAD/GMP synthase PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 PANTHER PTHR11922 1 523 1.5E-290 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 8 526 56.124 T 14-09-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 SUPERFAMILY SSF52402 198 421 1.01E-57 T 14-09-2016 PAJ_RS11810 d703ba539693cb231bf81f97c5499e27 526 Gene3D G3DSA:3.40.50.880 3 223 5.8E-60 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 SUPERFAMILY SSF46785 1 85 2.38E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 SUPERFAMILY SSF53850 89 289 2.35E-27 T 14-09-2016 PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 Pfam PF03466 LysR substrate binding domain 89 286 3.7E-30 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 PANTHER PTHR30126 1 290 9.0E-54 T 14-09-2016 PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.1E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.1E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.1E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 Gene3D G3DSA:3.40.190.10 191 247 2.5E-6 T 14-09-2016 PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 Gene3D G3DSA:3.40.190.10 89 190 9.5E-16 T 14-09-2016 PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.0E-22 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS20340 2a061c03065b3b90c8f33ab40aac8f48 292 Gene3D G3DSA:1.10.10.10 1 86 1.7E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07340 b89aa3fda5775991ad37bfd4c98cef16 462 PIRSF PIRSF000204 1 462 5.5E-235 T 14-09-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 PAJ_RS07340 b89aa3fda5775991ad37bfd4c98cef16 462 Gene3D G3DSA:3.40.50.1220 287 462 1.8E-92 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS07340 b89aa3fda5775991ad37bfd4c98cef16 462 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 9.0E-200 T 14-09-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 PAJ_RS07340 b89aa3fda5775991ad37bfd4c98cef16 462 SUPERFAMILY SSF52467 289 462 9.81E-78 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS07340 b89aa3fda5775991ad37bfd4c98cef16 462 PANTHER PTHR10160 4 462 5.0E-252 T 14-09-2016 PAJ_RS12855 55af5b2591f69b8e3ed43c645e64e3a8 106 Pfam PF12084 Protein of unknown function (DUF3561) 1 104 2.0E-45 T 14-09-2016 IPR022721 Protein of unknown function DUF3561 PAJ_RS12855 55af5b2591f69b8e3ed43c645e64e3a8 106 ProDom PD070788 MEMBRANE OXIDASE SUBUNIT CYTOCHROME YGBE INNER STY3057 TRANSMEMBRANE 1 106 6.0E-24 T 14-09-2016 IPR022721 Protein of unknown function DUF3561 PAJ_RS16430 8173247f3bda6c8031ce0b1ef4004409 298 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 5 294 3.0E-116 T 14-09-2016 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 PAJ_RS16430 8173247f3bda6c8031ce0b1ef4004409 298 PANTHER PTHR12110 9 294 2.5E-95 T 14-09-2016 PAJ_RS16430 8173247f3bda6c8031ce0b1ef4004409 298 Pfam PF01261 Xylose isomerase-like TIM barrel 37 249 4.7E-24 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS16430 8173247f3bda6c8031ce0b1ef4004409 298 PANTHER PTHR12110:SF4 9 294 2.5E-95 T 14-09-2016 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 PAJ_RS16430 8173247f3bda6c8031ce0b1ef4004409 298 Gene3D G3DSA:3.20.20.150 3 295 1.5E-82 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS16430 8173247f3bda6c8031ce0b1ef4004409 298 SUPERFAMILY SSF51658 7 294 1.44E-58 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS16430 8173247f3bda6c8031ce0b1ef4004409 298 Hamap MF_01672 Inosose dehydratase [iolE]. 1 298 54.378 T 14-09-2016 IPR023952 Inosose dehydratase GO:0019310|GO:0030145|GO:0050114 KEGG: 00562+4.2.1.44 PAJ_RS19540 15349e5a1001c40c9d71bddb53ebf9ed 74 SMART SM00899 1 72 2.5E-13 T 14-09-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 PAJ_RS19540 15349e5a1001c40c9d71bddb53ebf9ed 74 SUPERFAMILY SSF50037 2 73 1.58E-17 T 14-09-2016 IPR008988 Transcriptional repressor, C-terminal PAJ_RS19540 15349e5a1001c40c9d71bddb53ebf9ed 74 Pfam PF04023 FeoA domain 2 70 4.4E-11 T 14-09-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 PAJ_RS19540 15349e5a1001c40c9d71bddb53ebf9ed 74 PANTHER PTHR33238 2 73 9.2E-19 T 14-09-2016 PAJ_RS15410 5066ebf4757789bc1d988d11131cc51c 158 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 131 3.1E-40 T 14-09-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 PAJ_RS15410 5066ebf4757789bc1d988d11131cc51c 158 Gene3D G3DSA:3.40.50.300 4 151 6.4E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15410 5066ebf4757789bc1d988d11131cc51c 158 PANTHER PTHR33540:SF2 1 153 1.7E-51 T 14-09-2016 PAJ_RS15410 5066ebf4757789bc1d988d11131cc51c 158 PANTHER PTHR33540 1 153 1.7E-51 T 14-09-2016 PAJ_RS15410 5066ebf4757789bc1d988d11131cc51c 158 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 139 2.5E-50 T 14-09-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 PAJ_RS15410 5066ebf4757789bc1d988d11131cc51c 158 SUPERFAMILY SSF52540 30 140 1.84E-22 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01590 ae13a275f45ff26a17a41c81b544187f 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 32.07 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS01590 ae13a275f45ff26a17a41c81b544187f 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 1.9E-60 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS01590 ae13a275f45ff26a17a41c81b544187f 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 1.3E-56 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS01590 ae13a275f45ff26a17a41c81b544187f 156 SUPERFAMILY SSF52121 6 154 2.35E-60 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS01590 ae13a275f45ff26a17a41c81b544187f 156 Gene3D G3DSA:3.40.50.960 2 152 4.2E-65 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS01590 ae13a275f45ff26a17a41c81b544187f 156 PANTHER PTHR21058 1 156 2.2E-76 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 Gene3D G3DSA:3.40.710.10 381 797 5.0E-107 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 Pfam PF00905 Penicillin binding protein transpeptidase domain 472 720 2.9E-25 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 67 795 0.0 T 14-09-2016 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 Pfam PF00912 Transglycosylase 208 379 2.0E-55 T 14-09-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 PIRSF PIRSF002799 40 832 0.0 T 14-09-2016 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 Gene3D G3DSA:1.10.3810.10 204 380 4.6E-64 T 14-09-2016 PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 SUPERFAMILY SSF56601 411 786 1.44E-108 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 SUPERFAMILY SSF56601 361 383 1.44E-108 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 Pfam PF14814 Bifunctional transglycosylase second domain 112 196 2.1E-28 T 14-09-2016 IPR028166 Bifunctional transglycosylase second domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 Gene3D G3DSA:1.20.5.100 55 95 2.3E-22 T 14-09-2016 PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 SUPERFAMILY SSF52540 104 183 1.95E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 Pfam PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal 1 78 7.9E-29 T 14-09-2016 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 Gene3D G3DSA:3.30.2060.10 110 199 4.0E-32 T 14-09-2016 PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 PANTHER PTHR32282:SF11 181 830 1.1E-302 T 14-09-2016 PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 SUPERFAMILY SSF53955 196 402 1.6E-66 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS00600 06d80d067001f32992ee37d4fba4d348 842 PANTHER PTHR32282 181 830 1.1E-302 T 14-09-2016 PAJ_RS05705 2fc013ccd003723db3bd0ffada2a0915 274 Pfam PF02540 NAD synthase 23 265 1.8E-72 T 14-09-2016 IPR022310 NAD/GMP synthase PAJ_RS05705 2fc013ccd003723db3bd0ffada2a0915 274 Gene3D G3DSA:3.40.50.620 4 269 4.3E-66 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS05705 2fc013ccd003723db3bd0ffada2a0915 274 PANTHER PTHR23090:SF7 1 274 6.7E-160 T 14-09-2016 PAJ_RS05705 2fc013ccd003723db3bd0ffada2a0915 274 PANTHER PTHR23090 1 274 6.7E-160 T 14-09-2016 PAJ_RS05705 2fc013ccd003723db3bd0ffada2a0915 274 SUPERFAMILY SSF52402 3 273 7.39E-85 T 14-09-2016 PAJ_RS05705 2fc013ccd003723db3bd0ffada2a0915 274 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 17 268 30.879 T 14-09-2016 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 PAJ_RS05705 2fc013ccd003723db3bd0ffada2a0915 274 TIGRFAM TIGR00552 nadE: NAD+ synthetase 18 274 1.6E-78 T 14-09-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 PANTHER PTHR32071 1 444 1.0E-242 T 14-09-2016 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 Gene3D G3DSA:3.40.50.300 140 307 1.7E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 SMART SM00448 6 117 1.4E-33 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 SUPERFAMILY SSF52172 7 180 2.99E-42 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 222 237 - T 14-09-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 Pfam PF00158 Sigma-54 interaction domain 136 302 2.7E-72 T 14-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 Gene3D G3DSA:3.40.50.2300 6 139 2.7E-36 T 14-09-2016 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 160 173 - T 14-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 PANTHER PTHR32071:SF5 1 444 1.0E-242 T 14-09-2016 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 SUPERFAMILY SSF52540 136 380 8.31E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 Gene3D G3DSA:1.10.10.60 389 437 1.9E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 Gene3D G3DSA:1.10.8.60 309 385 7.0E-23 T 14-09-2016 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 349 358 - T 14-09-2016 IPR025944 Sigma-54 interaction domain, conserved site PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 SMART SM00382 156 299 1.6E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 SUPERFAMILY SSF46689 387 437 1.91E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS11975 b5ebf1b049d56d824c8010aeea684437 444 Pfam PF00072 Response regulator receiver domain 9 117 1.8E-29 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS09390 bd934f542d540fb55aaf0171173ee44b 276 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 24 269 1.3E-88 T 14-09-2016 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 PAJ_RS09390 bd934f542d540fb55aaf0171173ee44b 276 Pfam PF00005 ABC transporter 40 201 4.2E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09390 bd934f542d540fb55aaf0171173ee44b 276 ProSitePatterns PS00211 ABC transporters family signature. 173 187 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS09390 bd934f542d540fb55aaf0171173ee44b 276 SUPERFAMILY SSF52540 24 262 2.72E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09390 bd934f542d540fb55aaf0171173ee44b 276 Gene3D G3DSA:3.40.50.300 23 263 2.0E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09390 bd934f542d540fb55aaf0171173ee44b 276 SMART SM00382 49 270 2.0E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09390 bd934f542d540fb55aaf0171173ee44b 276 PANTHER PTHR24220 26 271 2.2E-109 T 14-09-2016 PAJ_RS09390 bd934f542d540fb55aaf0171173ee44b 276 PANTHER PTHR24220:SF408 26 271 2.2E-109 T 14-09-2016 PAJ_RS14450 e2cf2e98fdbc5b32e59a783a3b79b0ad 302 Gene3D G3DSA:1.10.10.60 191 244 7.7E-17 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS14450 e2cf2e98fdbc5b32e59a783a3b79b0ad 302 Gene3D G3DSA:1.10.10.60 245 288 3.3E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS14450 e2cf2e98fdbc5b32e59a783a3b79b0ad 302 SUPERFAMILY SSF46689 243 294 5.82E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS14450 e2cf2e98fdbc5b32e59a783a3b79b0ad 302 SUPERFAMILY SSF46689 191 241 4.38E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS14450 e2cf2e98fdbc5b32e59a783a3b79b0ad 302 PANTHER PTHR11019:SF134 28 298 1.2E-143 T 14-09-2016 PAJ_RS14450 e2cf2e98fdbc5b32e59a783a3b79b0ad 302 Pfam PF12833 Helix-turn-helix domain 213 289 1.5E-21 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS14450 e2cf2e98fdbc5b32e59a783a3b79b0ad 302 PANTHER PTHR11019 28 298 1.2E-143 T 14-09-2016 PAJ_RS14450 e2cf2e98fdbc5b32e59a783a3b79b0ad 302 Pfam PF06719 AraC-type transcriptional regulator N-terminus 28 178 6.4E-40 T 14-09-2016 IPR009594 Transcription regulator HTH, AraC, N-terminal PAJ_RS14450 e2cf2e98fdbc5b32e59a783a3b79b0ad 302 SMART SM00342 207 290 7.0E-28 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS14890 57670543963461116eb86903c04ef3f6 487 SMART SM00283 203 450 2.8E-70 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS14890 57670543963461116eb86903c04ef3f6 487 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 257 449 9.9E-52 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS14890 57670543963461116eb86903c04ef3f6 487 Gene3D G3DSA:1.10.287.950 218 422 1.9E-54 T 14-09-2016 PAJ_RS14890 57670543963461116eb86903c04ef3f6 487 SUPERFAMILY SSF58104 170 452 9.68E-66 T 14-09-2016 PAJ_RS14890 57670543963461116eb86903c04ef3f6 487 PANTHER PTHR32089:SF48 129 453 1.4E-126 T 14-09-2016 PAJ_RS14890 57670543963461116eb86903c04ef3f6 487 SMART SM00304 150 202 0.0045 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS14890 57670543963461116eb86903c04ef3f6 487 PANTHER PTHR32089 129 453 1.4E-126 T 14-09-2016 PAJ_RS20835 ed8d98b634279f407bee6071bc73820e 430 PANTHER PTHR23024:SF215 47 129 1.6E-43 T 14-09-2016 PAJ_RS20835 ed8d98b634279f407bee6071bc73820e 430 PANTHER PTHR23024 47 129 1.6E-43 T 14-09-2016 PAJ_RS20835 ed8d98b634279f407bee6071bc73820e 430 SUPERFAMILY SSF51905 3 231 5.49E-14 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS20835 ed8d98b634279f407bee6071bc73820e 430 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 4 340 1.7E-122 T 14-09-2016 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PAJ_RS20835 ed8d98b634279f407bee6071bc73820e 430 Gene3D G3DSA:3.50.50.60 92 226 3.5E-8 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19430 de097d58b3e0c9923a2fcea7f6a1cff7 493 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 249 7.5E-80 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 PAJ_RS19430 de097d58b3e0c9923a2fcea7f6a1cff7 493 SUPERFAMILY SSF53067 4 251 2.94E-62 T 14-09-2016 PAJ_RS19430 de097d58b3e0c9923a2fcea7f6a1cff7 493 PIRSF PIRSF000538 1 491 3.1E-100 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS19430 de097d58b3e0c9923a2fcea7f6a1cff7 493 Gene3D G3DSA:3.30.420.40 3 246 2.2E-59 T 14-09-2016 PAJ_RS19430 de097d58b3e0c9923a2fcea7f6a1cff7 493 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 438 3.9E-23 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 PAJ_RS19430 de097d58b3e0c9923a2fcea7f6a1cff7 493 PANTHER PTHR10196 1 485 6.2E-268 T 14-09-2016 PAJ_RS19430 de097d58b3e0c9923a2fcea7f6a1cff7 493 Gene3D G3DSA:3.30.420.40 255 484 1.8E-46 T 14-09-2016 PAJ_RS19430 de097d58b3e0c9923a2fcea7f6a1cff7 493 PANTHER PTHR10196:SF73 1 485 6.2E-268 T 14-09-2016 PAJ_RS19430 de097d58b3e0c9923a2fcea7f6a1cff7 493 SUPERFAMILY SSF53067 255 487 2.95E-53 T 14-09-2016 PAJ_RS19430 de097d58b3e0c9923a2fcea7f6a1cff7 493 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 353 373 - T 14-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS07895 8cd7457af19f9e3b5f37a0213246e88f 98 Pfam PF07383 Protein of unknown function (DUF1496) 42 98 2.0E-25 T 14-09-2016 IPR009971 Protein of unknown function DUF1496 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 SUPERFAMILY SSF52374 176 387 7.59E-104 T 14-09-2016 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 SUPERFAMILY SSF52374 6 141 7.59E-104 T 14-09-2016 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 SUPERFAMILY SSF50249 570 676 1.81E-27 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 Gene3D G3DSA:2.20.28.20 145 176 5.0E-19 T 14-09-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 Gene3D G3DSA:3.40.50.620 183 379 2.1E-89 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 Gene3D G3DSA:3.40.50.620 6 144 2.1E-89 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 545 41.093 T 14-09-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 SUPERFAMILY SSF57770 142 176 1.96E-12 T 14-09-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 SUPERFAMILY SSF47323 390 546 7.85E-44 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 535 3.1E-201 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 542 677 3.3E-45 T 14-09-2016 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 Pfam PF09334 tRNA synthetases class I (M) 8 396 8.7E-163 T 14-09-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 PANTHER PTHR11946 6 632 5.2E-249 T 14-09-2016 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 Gene3D G3DSA:1.10.730.10 380 533 2.3E-40 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 2.4E-25 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 2.4E-25 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 2.4E-25 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 384 395 2.4E-25 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 2.4E-25 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 2.4E-25 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 PANTHER PTHR11946:SF86 6 632 5.2E-249 T 14-09-2016 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 Pfam PF01588 Putative tRNA binding domain 581 674 4.4E-22 T 14-09-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 PAJ_RS10115 973d4c0da175171cbba5d2994896590d 677 Gene3D G3DSA:2.40.50.140 569 676 5.5E-37 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS18555 f0e415d4b3de558a30d701b5362fc45e 494 PANTHER PTHR30108:SF1 1 494 1.6E-282 T 14-09-2016 PAJ_RS18555 f0e415d4b3de558a30d701b5362fc45e 494 SUPERFAMILY SSF143968 323 487 1.14E-64 T 14-09-2016 PAJ_RS18555 f0e415d4b3de558a30d701b5362fc45e 494 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 487 73.933 T 14-09-2016 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 PAJ_RS18555 f0e415d4b3de558a30d701b5362fc45e 494 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 5.1E-186 T 14-09-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 PAJ_RS18555 f0e415d4b3de558a30d701b5362fc45e 494 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 431 7.1E-171 T 14-09-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 PAJ_RS18555 f0e415d4b3de558a30d701b5362fc45e 494 SUPERFAMILY SSF50475 3 322 5.49E-129 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PAJ_RS18555 f0e415d4b3de558a30d701b5362fc45e 494 PANTHER PTHR30108 1 494 1.6E-282 T 14-09-2016 PAJ_RS18555 f0e415d4b3de558a30d701b5362fc45e 494 Gene3D G3DSA:3.40.1670.10 338 454 9.0E-54 T 14-09-2016 PAJ_RS18555 f0e415d4b3de558a30d701b5362fc45e 494 Gene3D G3DSA:1.20.5.570 455 490 2.9E-21 T 14-09-2016 PAJ_RS15475 13207fb4b2bc7c550567831920fbb722 90 Gene3D G3DSA:3.30.1660.10 18 90 3.0E-20 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS15475 13207fb4b2bc7c550567831920fbb722 90 PANTHER PTHR34156 2 90 7.2E-31 T 14-09-2016 PAJ_RS15475 13207fb4b2bc7c550567831920fbb722 90 PANTHER PTHR34156:SF5 2 90 7.2E-31 T 14-09-2016 PAJ_RS15475 13207fb4b2bc7c550567831920fbb722 90 Pfam PF07338 Protein of unknown function (DUF1471) 42 90 2.3E-15 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS15475 13207fb4b2bc7c550567831920fbb722 90 SUPERFAMILY SSF159871 4 90 5.75E-22 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 Pfam PF13932 GidA associated domain 403 616 1.1E-71 T 14-09-2016 IPR026904 GidA associated domain 3 PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 Pfam PF01134 Glucose inhibited division protein A 8 398 4.9E-169 T 14-09-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 PANTHER PTHR11806:SF0 1 629 0.0 T 14-09-2016 PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 Gene3D G3DSA:3.50.50.60 7 232 1.4E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 SUPERFAMILY SSF51905 97 261 9.23E-52 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 SUPERFAMILY SSF51905 7 66 9.23E-52 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 3.2E-298 T 14-09-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.775 T 14-09-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 PANTHER PTHR11806 1 629 0.0 T 14-09-2016 PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 14-09-2016 IPR020595 MnmG-related, conserved site PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 14-09-2016 IPR020595 MnmG-related, conserved site PAJ_RS17610 8750280d9741da39cffe611e68d204d9 629 SMART SM01228 546 617 5.4E-44 T 14-09-2016 PAJ_RS02150 c97fc7e3875e51dc86310d828181f330 88 Pfam PF01527 Transposase 2 71 4.6E-16 T 14-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PAJ_RS02150 c97fc7e3875e51dc86310d828181f330 88 SUPERFAMILY SSF46689 1 73 8.96E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS02150 c97fc7e3875e51dc86310d828181f330 88 Gene3D G3DSA:1.10.10.60 8 85 1.3E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS02150 c97fc7e3875e51dc86310d828181f330 88 PANTHER PTHR33609 2 88 3.7E-26 T 14-09-2016 PAJ_RS18125 72e942af362dadaa30acaf60e333c529 563 SUPERFAMILY SSF53649 250 543 3.92E-19 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PAJ_RS18125 72e942af362dadaa30acaf60e333c529 563 PANTHER PTHR30443:SF3 1 555 0.0 T 14-09-2016 PAJ_RS18125 72e942af362dadaa30acaf60e333c529 563 Pfam PF00884 Sulfatase 250 538 2.8E-43 T 14-09-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PAJ_RS18125 72e942af362dadaa30acaf60e333c529 563 Gene3D G3DSA:3.40.720.10 250 543 2.1E-14 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PAJ_RS18125 72e942af362dadaa30acaf60e333c529 563 Pfam PF08019 Domain of unknown function (DUF1705) 56 196 6.2E-20 T 14-09-2016 IPR012549 Domain of unknown function DUF1705 GO:0016021 PAJ_RS18125 72e942af362dadaa30acaf60e333c529 563 PANTHER PTHR30443 1 555 0.0 T 14-09-2016 PAJ_RS10300 1df3d72fe2bbde2a6074d36f0358086b 604 PIRSF PIRSF002741 4 595 1.2E-128 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS10300 1df3d72fe2bbde2a6074d36f0358086b 604 PANTHER PTHR30290:SF2 382 602 8.1E-208 T 14-09-2016 PAJ_RS10300 1df3d72fe2bbde2a6074d36f0358086b 604 PANTHER PTHR30290 1 357 8.1E-208 T 14-09-2016 PAJ_RS10300 1df3d72fe2bbde2a6074d36f0358086b 604 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 101 505 1.5E-68 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS10300 1df3d72fe2bbde2a6074d36f0358086b 604 PANTHER PTHR30290:SF2 1 357 8.1E-208 T 14-09-2016 PAJ_RS10300 1df3d72fe2bbde2a6074d36f0358086b 604 SUPERFAMILY SSF53850 50 593 1.28E-107 T 14-09-2016 PAJ_RS10300 1df3d72fe2bbde2a6074d36f0358086b 604 Gene3D G3DSA:3.40.190.10 175 321 8.9E-29 T 14-09-2016 PAJ_RS10300 1df3d72fe2bbde2a6074d36f0358086b 604 PANTHER PTHR30290 382 602 8.1E-208 T 14-09-2016 PAJ_RS10300 1df3d72fe2bbde2a6074d36f0358086b 604 Gene3D G3DSA:3.90.76.10 95 174 2.5E-13 T 14-09-2016 PAJ_RS10300 1df3d72fe2bbde2a6074d36f0358086b 604 Gene3D G3DSA:3.10.105.10 322 562 6.7E-47 T 14-09-2016 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.439 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 PANTHER PTHR11880 1 92 3.5E-57 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.6E-45 T 14-09-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 Pfam PF00203 Ribosomal protein S19 3 83 6.0E-36 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 Gene3D G3DSA:3.30.860.10 1 91 2.8E-40 T 14-09-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 PIRSF PIRSF002144 1 92 2.8E-31 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 14-09-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.1E-24 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.1E-24 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.1E-24 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15835 707f49a5e41dfbeb219aeb4bac8402d7 92 SUPERFAMILY SSF54570 3 84 6.02E-35 T 14-09-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 PAJ_RS11170 565c4b761d0562dcac39379cff54081f 174 SUPERFAMILY SSF55729 3 169 9.7E-37 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS11170 565c4b761d0562dcac39379cff54081f 174 Gene3D G3DSA:3.40.630.30 2 167 2.6E-35 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS11170 565c4b761d0562dcac39379cff54081f 174 PANTHER PTHR13256:SF10 1 161 2.6E-26 T 14-09-2016 PAJ_RS11170 565c4b761d0562dcac39379cff54081f 174 PANTHER PTHR13256 1 161 2.6E-26 T 14-09-2016 PAJ_RS11170 565c4b761d0562dcac39379cff54081f 174 Pfam PF13302 Acetyltransferase (GNAT) domain 7 146 2.5E-23 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS10645 ea3a58830ae4827bd74f4f6fae6893fe 199 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 3 195 44.914 T 14-09-2016 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 PAJ_RS10645 ea3a58830ae4827bd74f4f6fae6893fe 199 PANTHER PTHR11845 3 190 9.9E-48 T 14-09-2016 PAJ_RS10645 ea3a58830ae4827bd74f4f6fae6893fe 199 SMART SM00471 26 151 5.9E-8 T 14-09-2016 IPR003607 HD/PDEase domain PAJ_RS10645 ea3a58830ae4827bd74f4f6fae6893fe 199 Pfam PF13023 HD domain 11 158 1.0E-19 T 14-09-2016 IPR006674 HD domain PAJ_RS10645 ea3a58830ae4827bd74f4f6fae6893fe 199 SUPERFAMILY SSF109604 3 185 4.71E-45 T 14-09-2016 PAJ_RS10645 ea3a58830ae4827bd74f4f6fae6893fe 199 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 80 176 1.0E-37 T 14-09-2016 PAJ_RS10645 ea3a58830ae4827bd74f4f6fae6893fe 199 Gene3D G3DSA:1.10.3210.10 3 194 9.8E-52 T 14-09-2016 IPR006674 HD domain PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 Gene3D G3DSA:3.30.750.44 200 250 4.3E-4 T 14-09-2016 PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 534 666 5.0E-41 T 14-09-2016 IPR020992 Tail specific protease, C-terminal PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 SMART SM00245 325 530 9.4E-76 T 14-09-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 Pfam PF03572 Peptidase family S41 355 527 9.1E-52 T 14-09-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 PANTHER PTHR32060 2 603 0.0 T 14-09-2016 PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 193 550 6.2E-124 T 14-09-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 SUPERFAMILY SSF52096 168 263 3.48E-69 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 SUPERFAMILY SSF52096 349 534 3.48E-69 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 SUPERFAMILY SSF50156 215 346 6.28E-16 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 SMART SM00228 245 322 6.0E-8 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 Gene3D G3DSA:2.30.42.10 251 334 2.8E-22 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 Gene3D G3DSA:3.90.226.10 645 671 9.9E-66 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 Gene3D G3DSA:3.90.226.10 335 532 9.9E-66 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 239 319 4.7E-14 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS08160 a99841d98ed71f1e45f3fb88bf2296a3 681 PANTHER PTHR32060:SF11 2 603 0.0 T 14-09-2016 PAJ_RS02525 66228022a024876396e084a99a2988f4 474 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 74.094 T 14-09-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 PAJ_RS02525 66228022a024876396e084a99a2988f4 474 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 4.1E-154 T 14-09-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 PAJ_RS02525 66228022a024876396e084a99a2988f4 474 Gene3D G3DSA:3.80.30.20 146 379 2.0E-78 T 14-09-2016 IPR023404 Radical SAM, alpha/beta horseshoe PAJ_RS02525 66228022a024876396e084a99a2988f4 474 PANTHER PTHR11918:SF43 1 474 3.2E-233 T 14-09-2016 PAJ_RS02525 66228022a024876396e084a99a2988f4 474 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 14-09-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 PAJ_RS02525 66228022a024876396e084a99a2988f4 474 Pfam PF04055 Radical SAM superfamily 151 325 5.5E-27 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS02525 66228022a024876396e084a99a2988f4 474 SUPERFAMILY SSF102114 127 372 1.7E-62 T 14-09-2016 PAJ_RS02525 66228022a024876396e084a99a2988f4 474 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 440 3.1E-212 T 14-09-2016 PAJ_RS02525 66228022a024876396e084a99a2988f4 474 PANTHER PTHR11918 1 474 3.2E-233 T 14-09-2016 IPR023970 Methylthiotransferase/radical SAM-type protein PAJ_RS02525 66228022a024876396e084a99a2988f4 474 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 4.2E-30 T 14-09-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 PAJ_RS02525 66228022a024876396e084a99a2988f4 474 Pfam PF01938 TRAM domain 378 440 1.2E-17 T 14-09-2016 IPR002792 TRAM domain PAJ_RS02525 66228022a024876396e084a99a2988f4 474 SMART SM00729 147 367 2.7E-61 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PAJ_RS03550 ac55baae0e9876df16c3684a0ccc065e 230 PANTHER PTHR30098 1 230 1.5E-87 T 14-09-2016 PAJ_RS03550 ac55baae0e9876df16c3684a0ccc065e 230 PANTHER PTHR30098:SF2 1 230 1.5E-87 T 14-09-2016 PAJ_RS03550 ac55baae0e9876df16c3684a0ccc065e 230 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 35 203 3.2E-70 T 14-09-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 PAJ_RS03550 ac55baae0e9876df16c3684a0ccc065e 230 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 230 95.695 T 14-09-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 PAJ_RS03550 ac55baae0e9876df16c3684a0ccc065e 230 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 32 214 5.5E-81 T 14-09-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 PAJ_RS03550 ac55baae0e9876df16c3684a0ccc065e 230 SUPERFAMILY SSF55729 2 228 1.91E-91 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 Pfam PF03466 LysR substrate binding domain 89 285 4.7E-36 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 PANTHER PTHR30537:SF26 6 286 1.2E-87 T 14-09-2016 PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 SUPERFAMILY SSF53850 90 288 1.99E-36 T 14-09-2016 PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.0E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.0E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.0E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 Gene3D G3DSA:3.40.190.10 177 254 6.2E-17 T 14-09-2016 PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 Gene3D G3DSA:1.10.10.10 4 85 1.4E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 PANTHER PTHR30537 6 286 1.2E-87 T 14-09-2016 PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 Gene3D G3DSA:3.40.190.10 94 176 3.8E-27 T 14-09-2016 PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.2E-16 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS06095 318b2ae4fd97e04765c0754b0b32214f 291 SUPERFAMILY SSF46785 5 86 2.14E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08490 7eacc46c6eba9da5e376c794f95c6de7 129 SMART SM00448 6 120 1.1E-34 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS08490 7eacc46c6eba9da5e376c794f95c6de7 129 PANTHER PTHR26402 6 126 2.4E-41 T 14-09-2016 PAJ_RS08490 7eacc46c6eba9da5e376c794f95c6de7 129 Pfam PF00072 Response regulator receiver domain 9 120 6.2E-32 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS08490 7eacc46c6eba9da5e376c794f95c6de7 129 SUPERFAMILY SSF52172 4 125 1.02E-35 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS08490 7eacc46c6eba9da5e376c794f95c6de7 129 Gene3D G3DSA:3.40.50.2300 4 125 1.8E-38 T 14-09-2016 PAJ_RS17090 4b71d9001d1cb7bc1aac3307906d92a5 336 SUPERFAMILY SSF56655 1 325 1.4E-109 T 14-09-2016 PAJ_RS17090 4b71d9001d1cb7bc1aac3307906d92a5 336 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 322 1.4E-129 T 14-09-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 PAJ_RS17090 4b71d9001d1cb7bc1aac3307906d92a5 336 PANTHER PTHR30447:SF0 1 336 4.1E-178 T 14-09-2016 PAJ_RS17090 4b71d9001d1cb7bc1aac3307906d92a5 336 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 329 1.3E-174 T 14-09-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 PAJ_RS17090 4b71d9001d1cb7bc1aac3307906d92a5 336 PANTHER PTHR30447 1 336 4.1E-178 T 14-09-2016 PAJ_RS17090 4b71d9001d1cb7bc1aac3307906d92a5 336 PIRSF PIRSF004532 1 332 1.3E-136 T 14-09-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 PAJ_RS17090 4b71d9001d1cb7bc1aac3307906d92a5 336 Gene3D G3DSA:3.30.540.10 172 328 1.1E-43 T 14-09-2016 PAJ_RS17090 4b71d9001d1cb7bc1aac3307906d92a5 336 Gene3D G3DSA:3.30.540.10 1 171 1.5E-68 T 14-09-2016 PAJ_RS10260 8309322b1f1e05972fe2a965db078fdd 343 SMART SM00354 15 86 6.1E-19 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS10260 8309322b1f1e05972fe2a965db078fdd 343 PANTHER PTHR30146 16 341 1.1E-93 T 14-09-2016 PAJ_RS10260 8309322b1f1e05972fe2a965db078fdd 343 Gene3D G3DSA:1.10.260.40 16 68 1.5E-18 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS10260 8309322b1f1e05972fe2a965db078fdd 343 Gene3D G3DSA:3.40.50.2300 186 339 1.9E-49 T 14-09-2016 PAJ_RS10260 8309322b1f1e05972fe2a965db078fdd 343 SUPERFAMILY SSF47413 15 74 2.22E-13 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS10260 8309322b1f1e05972fe2a965db078fdd 343 SUPERFAMILY SSF53822 76 341 2.55E-68 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS10260 8309322b1f1e05972fe2a965db078fdd 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 18 36 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS10260 8309322b1f1e05972fe2a965db078fdd 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 17 62 1.5E-13 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS10260 8309322b1f1e05972fe2a965db078fdd 343 Pfam PF13377 Periplasmic binding protein-like domain 181 338 9.6E-35 T 14-09-2016 PAJ_RS10260 8309322b1f1e05972fe2a965db078fdd 343 Gene3D G3DSA:3.40.50.2300 69 185 8.4E-37 T 14-09-2016 PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 PANTHER PTHR30146:SF4 4 337 4.7E-85 T 14-09-2016 PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 Gene3D G3DSA:3.40.50.2300 75 169 6.3E-12 T 14-09-2016 PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 Pfam PF13377 Periplasmic binding protein-like domain 171 335 1.4E-30 T 14-09-2016 PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 47 5.6E-12 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 PANTHER PTHR30146 4 337 4.7E-85 T 14-09-2016 PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 Gene3D G3DSA:3.40.50.2300 170 336 4.8E-40 T 14-09-2016 PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 SMART SM00354 4 64 1.5E-5 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 SUPERFAMILY SSF47413 6 58 4.83E-10 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 SUPERFAMILY SSF53822 75 335 1.3E-41 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS14220 a4b1dd8eb830a2ee8a63560ef2c6b0ed 354 Gene3D G3DSA:1.10.260.40 6 47 6.5E-13 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 SUPERFAMILY SSF46785 3 46 2.72E-6 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 Gene3D G3DSA:1.10.10.10 1 46 3.5E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 Gene3D G3DSA:1.10.10.10 92 137 5.5E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 SUPERFAMILY SSF63520 318 418 1.18E-17 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 PANTHER PTHR30185 4 504 2.2E-85 T 14-09-2016 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 PANTHER PTHR30185:SF5 4 504 2.2E-85 T 14-09-2016 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 Gene3D G3DSA:1.10.1790.10 320 418 1.9E-18 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 Gene3D G3DSA:1.10.1790.10 199 295 1.4E-19 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 SUPERFAMILY SSF63520 191 295 3.27E-22 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 Pfam PF00874 PRD domain 324 414 4.6E-16 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 Pfam PF00874 PRD domain 209 295 1.3E-15 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 SUPERFAMILY SSF52794 421 502 1.36E-10 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 Pfam PF05043 Mga helix-turn-helix domain 96 167 9.9E-7 T 14-09-2016 IPR007737 Mga helix-turn-helix domain PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 Pfam PF08279 HTH domain 7 62 1.1E-7 T 14-09-2016 IPR013196 Helix-turn-helix, type 11 PAJ_RS14480 8958a8fe04c1f8f745daec0090b623c0 520 Gene3D G3DSA:3.40.50.270 422 502 6.3E-8 T 14-09-2016 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 SUPERFAMILY SSF57716 224 261 3.06E-10 T 14-09-2016 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 PANTHER PTHR22993 1 261 8.5E-132 T 14-09-2016 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 ProSitePatterns PS01242 Zinc finger FPG-type signature. 237 261 - T 14-09-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 126 214 3.8E-13 T 14-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 Gene3D G3DSA:1.10.8.50 126 261 5.3E-33 T 14-09-2016 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 SMART SM00898 2 110 1.9E-16 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 PANTHER PTHR22993:SF14 1 261 8.5E-132 T 14-09-2016 IPR023713 Endonuclease VIII GO:0003684|GO:0004519|GO:0006284|GO:0008270 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 Gene3D G3DSA:3.20.190.10 2 105 1.6E-17 T 14-09-2016 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 SMART SM01232 126 220 2.4E-16 T 14-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 SUPERFAMILY SSF46946 125 215 4.19E-19 T 14-09-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 Pfam PF06827 Zinc finger found in FPG and IleRS 234 261 2.7E-6 T 14-09-2016 IPR010663 Zinc finger, FPG/IleRS-type PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 104 9.6E-11 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 PAJ_RS02695 0d18e5f3af5f7439168f331c7207a1aa 262 SUPERFAMILY SSF81624 2 127 3.53E-25 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 PANTHER PTHR24423:SF538 10 54 1.2E-123 T 14-09-2016 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 Gene3D G3DSA:3.30.565.10 215 352 8.3E-28 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 SMART SM00387 248 355 3.4E-21 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 Pfam PF00512 His Kinase A (phospho-acceptor) domain 144 200 5.0E-10 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 PANTHER PTHR24423:SF538 83 350 1.2E-123 T 14-09-2016 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 SUPERFAMILY SSF55874 192 343 4.85E-28 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 SUPERFAMILY SSF47384 126 198 9.22E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 PANTHER PTHR24423 10 54 1.2E-123 T 14-09-2016 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 Gene3D G3DSA:1.10.287.130 134 198 3.0E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 Pfam PF00672 HAMP domain 73 137 2.6E-7 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 PANTHER PTHR24423 83 350 1.2E-123 T 14-09-2016 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 315 333 2.9E-9 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 284 298 2.9E-9 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 248 351 8.4E-18 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS08560 ab4ab8289bd34d6ce9d1a18e68449138 355 SMART SM00388 142 202 8.7E-11 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10015 6c6361a13b0ccd93a079f8f145d09428 410 Hamap MF_01422 Multidrug resistance protein MdtA [mdtA]. 1 408 54.814 T 14-09-2016 IPR022824 Multidrug resistance protein MdtA PAJ_RS10015 6c6361a13b0ccd93a079f8f145d09428 410 Gene3D G3DSA:2.40.50.100 193 228 9.7E-25 T 14-09-2016 PAJ_RS10015 6c6361a13b0ccd93a079f8f145d09428 410 Gene3D G3DSA:2.40.50.100 84 118 9.7E-25 T 14-09-2016 PAJ_RS10015 6c6361a13b0ccd93a079f8f145d09428 410 Pfam PF13533 Biotin-lipoyl like 85 133 7.3E-16 T 14-09-2016 PAJ_RS10015 6c6361a13b0ccd93a079f8f145d09428 410 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 60 388 1.4E-80 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS10015 6c6361a13b0ccd93a079f8f145d09428 410 PANTHER PTHR30469 55 399 9.2E-186 T 14-09-2016 PAJ_RS10015 6c6361a13b0ccd93a079f8f145d09428 410 Pfam PF13437 HlyD family secretion protein 196 299 2.8E-9 T 14-09-2016 PAJ_RS10015 6c6361a13b0ccd93a079f8f145d09428 410 SUPERFAMILY SSF111369 76 312 2.22E-57 T 14-09-2016 PAJ_RS10015 6c6361a13b0ccd93a079f8f145d09428 410 PANTHER PTHR30469:SF12 55 399 9.2E-186 T 14-09-2016 IPR022824 Multidrug resistance protein MdtA PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 Gene3D G3DSA:3.30.300.30 617 714 1.2E-9 T 14-09-2016 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 Gene3D G3DSA:3.40.50.980 232 375 1.7E-18 T 14-09-2016 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 SMART SM00563 30 140 1.1E-23 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 PANTHER PTHR24096 124 714 0.0 T 14-09-2016 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 SUPERFAMILY SSF69593 4 171 1.11E-18 T 14-09-2016 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 Gene3D G3DSA:2.30.38.10 534 613 1.7E-12 T 14-09-2016 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 Gene3D G3DSA:3.40.50.980 376 533 3.2E-38 T 14-09-2016 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 Pfam PF01553 Acyltransferase 27 137 4.4E-14 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 SUPERFAMILY SSF56801 205 714 8.63E-95 T 14-09-2016 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 ProSitePatterns PS00455 Putative AMP-binding domain signature. 370 381 - T 14-09-2016 IPR020845 AMP-binding, conserved site PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 PANTHER PTHR24096:SF177 124 714 0.0 T 14-09-2016 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 Hamap MF_01162 Bifunctional protein Aas [aas]. 1 716 49.808 T 14-09-2016 IPR023775 Bifunctional protein Aas GO:0006631|GO:0008654|GO:0008779|GO:0008922 KEGG: 00071+6.2.1.20|KEGG: 00564+2.3.1.40|MetaCyc: PWY-6622|MetaCyc: PWY-7032 PAJ_RS20040 5e5eb0d32f4c23338eaf7e3707f16355 716 Pfam PF00501 AMP-binding enzyme 233 619 1.5E-63 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 Gene3D G3DSA:2.40.50.140 67 131 1.5E-14 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 125 2.2E-14 T 14-09-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 PANTHER PTHR30053 1 190 1.0E-122 T 14-09-2016 PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 SMART SM01185 69 125 5.1E-16 T 14-09-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 Gene3D G3DSA:2.40.50.140 132 189 5.1E-20 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 SUPERFAMILY SSF50104 1 64 3.13E-11 T 14-09-2016 IPR008991 Translation protein SH3-like domain PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 189 1.0E-93 T 14-09-2016 IPR011897 Translation elongation factor P-like, YeiP PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 SUPERFAMILY SSF50249 132 189 9.94E-13 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 189 45.707 T 14-09-2016 IPR011897 Translation elongation factor P-like, YeiP PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 Pfam PF09285 Elongation factor P, C-terminal 133 188 3.1E-16 T 14-09-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 PANTHER PTHR30053:SF5 1 190 1.0E-122 T 14-09-2016 PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 Gene3D G3DSA:2.30.30.30 1 64 4.7E-15 T 14-09-2016 IPR014722 Ribosomal protein L2 domain 2 PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 SUPERFAMILY SSF50249 67 130 3.73E-11 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 ProSitePatterns PS01275 Elongation factor P signature. 154 173 - T 14-09-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 PIRSF PIRSF005901 1 190 1.5E-59 T 14-09-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 SMART SM00841 133 188 5.6E-22 T 14-09-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 PAJ_RS10275 d11cb6cbdbbee4e5ff757ad7eceeb032 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 61 1.2E-16 T 14-09-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 SUPERFAMILY SSF50249 224 642 3.71E-142 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 SMART SM00316 643 726 2.8E-13 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 SUPERFAMILY SSF50249 645 725 5.54E-22 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 SMART SM00357 86 145 6.4E-13 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 PANTHER PTHR23355:SF9 1 807 0.0 T 14-09-2016 PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 Pfam PF08206 Ribonuclease B OB domain 87 144 3.3E-21 T 14-09-2016 IPR013223 Ribonuclease B, N-terminal OB domain PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 Pfam PF00773 RNB domain 260 587 5.0E-109 T 14-09-2016 PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 ProSitePatterns PS01175 Ribonuclease II family signature. 555 579 - T 14-09-2016 IPR022966 Ribonuclease II/R, conserved site PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 Pfam PF00575 S1 RNA binding domain 642 724 7.1E-17 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 Pfam PF08461 Ribonuclease R winged-helix domain 23 85 1.0E-15 T 14-09-2016 IPR013668 Ribonuclease R winged-helix domain PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 SUPERFAMILY SSF50249 138 237 8.38E-14 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 Gene3D G3DSA:2.40.50.140 645 730 4.1E-21 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 PANTHER PTHR23355 1 807 0.0 T 14-09-2016 PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 SUPERFAMILY SSF50249 67 146 1.94E-15 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 TIGRFAM TIGR02063 RNase_R: ribonuclease R 19 726 1.7E-278 T 14-09-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 Hamap MF_01895 Ribonuclease R [rnr]. 38 726 57.992 T 14-09-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 SMART SM00955 260 588 8.2E-186 T 14-09-2016 PAJ_RS15355 0be6c8e0883a0a96373d46323e70a678 811 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 67 726 2.2E-271 T 14-09-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 PAJ_RS07705 87cbc5c65b751c627aace7e1801a560b 332 Pfam PF02885 Glycosyl transferase family, helical bundle domain 3 62 4.0E-15 T 14-09-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain PAJ_RS07705 87cbc5c65b751c627aace7e1801a560b 332 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 331 39.234 T 14-09-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 PAJ_RS07705 87cbc5c65b751c627aace7e1801a560b 332 Pfam PF00591 Glycosyl transferase family, a/b domain 73 322 6.7E-99 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PAJ_RS07705 87cbc5c65b751c627aace7e1801a560b 332 Gene3D G3DSA:3.40.1030.10 71 328 2.2E-99 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PAJ_RS07705 87cbc5c65b751c627aace7e1801a560b 332 PANTHER PTHR11922:SF25 67 328 5.8E-123 T 14-09-2016 PAJ_RS07705 87cbc5c65b751c627aace7e1801a560b 332 PANTHER PTHR11922 67 328 5.8E-123 T 14-09-2016 PAJ_RS07705 87cbc5c65b751c627aace7e1801a560b 332 Gene3D G3DSA:1.20.970.10 3 68 4.3E-26 T 14-09-2016 PAJ_RS07705 87cbc5c65b751c627aace7e1801a560b 332 SUPERFAMILY SSF52418 70 327 9.29E-94 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PAJ_RS07705 87cbc5c65b751c627aace7e1801a560b 332 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 5 328 9.4E-128 T 14-09-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 PAJ_RS07705 87cbc5c65b751c627aace7e1801a560b 332 SUPERFAMILY SSF47648 1 67 3.01E-17 T 14-09-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PANTHER PTHR11206 217 442 4.0E-104 T 14-09-2016 PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PANTHER PTHR11206 469 487 4.0E-104 T 14-09-2016 PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PANTHER PTHR11206 70 82 4.0E-104 T 14-09-2016 PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PIRSF PIRSF002869 1 511 6.4E-177 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 503 1.3E-165 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PANTHER PTHR11206:SF90 217 442 4.0E-104 T 14-09-2016 PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PANTHER PTHR11206:SF90 469 487 4.0E-104 T 14-09-2016 PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PANTHER PTHR11206:SF90 70 82 4.0E-104 T 14-09-2016 PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 Pfam PF03023 MviN-like protein 28 478 7.8E-152 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PRINTS PR01806 Virulence factor MviN signature 357 376 7.9E-87 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PRINTS PR01806 Virulence factor MviN signature 409 426 7.9E-87 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PRINTS PR01806 Virulence factor MviN signature 52 68 7.9E-87 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PRINTS PR01806 Virulence factor MviN signature 133 157 7.9E-87 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PRINTS PR01806 Virulence factor MviN signature 33 52 7.9E-87 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PRINTS PR01806 Virulence factor MviN signature 259 285 7.9E-87 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PAJ_RS04425 ac3bb0db9bbbb139c73b9bf7f90a4fa1 512 PRINTS PR01806 Virulence factor MviN signature 157 178 7.9E-87 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PAJ_RS05995 ea539d09748f47448fe2589c9f8b7fb4 666 PANTHER PTHR30509 10 258 4.6E-122 T 14-09-2016 PAJ_RS05995 ea539d09748f47448fe2589c9f8b7fb4 666 PANTHER PTHR30509 309 644 4.6E-122 T 14-09-2016 PAJ_RS05995 ea539d09748f47448fe2589c9f8b7fb4 666 PANTHER PTHR30509:SF1 10 258 4.6E-122 T 14-09-2016 PAJ_RS05995 ea539d09748f47448fe2589c9f8b7fb4 666 PANTHER PTHR30509:SF1 309 644 4.6E-122 T 14-09-2016 PAJ_RS05995 ea539d09748f47448fe2589c9f8b7fb4 666 Pfam PF04632 Fusaric acid resistance protein family 20 663 6.1E-164 T 14-09-2016 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 PAJ_RS17375 8847d38f8b643939554204d5b431a7a0 220 Pfam PF13440 Polysaccharide biosynthesis protein 36 210 6.6E-19 T 14-09-2016 PAJ_RS17375 8847d38f8b643939554204d5b431a7a0 220 PANTHER PTHR30250:SF3 1 210 1.3E-22 T 14-09-2016 PAJ_RS17375 8847d38f8b643939554204d5b431a7a0 220 PANTHER PTHR30250 1 210 1.3E-22 T 14-09-2016 PAJ_RS05780 93f977a721dcdbeeecabecf6b80496b4 327 SUPERFAMILY SSF55681 92 327 1.07E-81 T 14-09-2016 PAJ_RS05780 93f977a721dcdbeeecabecf6b80496b4 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 6.1E-25 T 14-09-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 PAJ_RS05780 93f977a721dcdbeeecabecf6b80496b4 327 Gene3D G3DSA:3.30.930.10 9 327 1.1E-132 T 14-09-2016 PAJ_RS05780 93f977a721dcdbeeecabecf6b80496b4 327 PANTHER PTHR11538 4 15 4.7E-119 T 14-09-2016 PAJ_RS05780 93f977a721dcdbeeecabecf6b80496b4 327 PANTHER PTHR11538 90 327 4.7E-119 T 14-09-2016 PAJ_RS05780 93f977a721dcdbeeecabecf6b80496b4 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.135 T 14-09-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 PAJ_RS05780 93f977a721dcdbeeecabecf6b80496b4 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 2.6E-107 T 14-09-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 PAJ_RS05780 93f977a721dcdbeeecabecf6b80496b4 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 327 1.7E-117 T 14-09-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 PAJ_RS05780 93f977a721dcdbeeecabecf6b80496b4 327 SUPERFAMILY SSF46589 14 99 9.94E-21 T 14-09-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 PAJ_RS09455 ff8ae68ac61c4bd2fea6295befe59f87 641 SUPERFAMILY SSF48317 218 338 2.49E-22 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS09455 ff8ae68ac61c4bd2fea6295befe59f87 641 Pfam PF01569 PAP2 superfamily 232 338 1.6E-10 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS09455 ff8ae68ac61c4bd2fea6295befe59f87 641 Pfam PF12951 Passenger-associated-transport-repeat 496 524 8.3E-9 T 14-09-2016 IPR013425 Autotransporter-associated beta strand repeat PAJ_RS09455 ff8ae68ac61c4bd2fea6295befe59f87 641 Gene3D G3DSA:1.20.144.10 211 351 7.9E-47 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS09455 ff8ae68ac61c4bd2fea6295befe59f87 641 Gene3D G3DSA:1.20.144.10 122 178 7.9E-47 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS09455 ff8ae68ac61c4bd2fea6295befe59f87 641 SMART SM00014 217 335 0.0064 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS09455 ff8ae68ac61c4bd2fea6295befe59f87 641 Gene3D G3DSA:2.160.20.20 461 538 3.4E-6 T 14-09-2016 IPR012332 P22 tailspike C-terminal domain-like PAJ_RS09455 ff8ae68ac61c4bd2fea6295befe59f87 641 SUPERFAMILY SSF51126 459 591 3.45E-10 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS09455 ff8ae68ac61c4bd2fea6295befe59f87 641 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 496 526 1.4E-9 T 14-09-2016 IPR013425 Autotransporter-associated beta strand repeat PAJ_RS17310 5e0e987ce917f8e27aef97808e126444 152 SUPERFAMILY SSF51283 1 151 6.8E-56 T 14-09-2016 IPR029054 dUTPase-like PAJ_RS17310 5e0e987ce917f8e27aef97808e126444 152 Pfam PF00692 dUTPase 18 150 5.0E-42 T 14-09-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 PAJ_RS17310 5e0e987ce917f8e27aef97808e126444 152 PANTHER PTHR11241 1 151 7.6E-57 T 14-09-2016 PAJ_RS17310 5e0e987ce917f8e27aef97808e126444 152 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 7 151 34.044 T 14-09-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 PAJ_RS17310 5e0e987ce917f8e27aef97808e126444 152 TIGRFAM TIGR00576 dut: dUTP diphosphatase 10 151 3.0E-49 T 14-09-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 PAJ_RS17310 5e0e987ce917f8e27aef97808e126444 152 Gene3D G3DSA:2.70.40.10 5 151 2.2E-53 T 14-09-2016 IPR029054 dUTPase-like PAJ_RS04445 0267216dfe70acd05c1d6dbae08f249b 219 SMART SM00858 95 157 4.2E-9 T 14-09-2016 IPR013974 SAF domain PAJ_RS04445 0267216dfe70acd05c1d6dbae08f249b 219 Pfam PF13144 Chaperone for flagella basal body P-ring formation 27 216 2.7E-43 T 14-09-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal PAJ_RS04445 0267216dfe70acd05c1d6dbae08f249b 219 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 84 217 3.3E-37 T 14-09-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal PAJ_RS04445 0267216dfe70acd05c1d6dbae08f249b 219 PANTHER PTHR36307 43 217 2.0E-30 T 14-09-2016 PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 SMART SM00869 1213 1479 7.7E-14 T 14-09-2016 IPR005546 Autotransporter beta-domain PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 93 126 1.7E-5 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 620 643 1.1E-5 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 367 399 7.5E-8 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 169 200 6.9E-7 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 515 551 1.7E-8 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 845 881 9.5E-11 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 808 843 1.7E-9 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 256 292 3.9E-6 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 329 364 7.3E-8 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 127 164 1.1E-8 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 478 514 6.1E-11 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 441 477 4.6E-6 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 773 807 1.1E-7 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 883 919 1.3E-8 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 404 438 1.1E-6 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 648 679 8.4E-5 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 182 218 3.6E-10 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 146 177 3.9E-6 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Gene3D G3DSA:2.160.20.20 59 351 7.8E-8 T 14-09-2016 IPR012332 P22 tailspike C-terminal domain-like PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Gene3D G3DSA:2.160.20.20 644 1159 2.4E-46 T 14-09-2016 IPR012332 P22 tailspike C-terminal domain-like PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 SUPERFAMILY SSF103515 1186 1492 9.15E-23 T 14-09-2016 IPR005546 Autotransporter beta-domain PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 PANTHER PTHR12338:SF7 87 1159 1.1E-31 T 14-09-2016 PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 21 3.9E-8 T 14-09-2016 IPR024973 ESPR domain PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 SUPERFAMILY SSF51126 769 1159 1.38E-38 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 SUPERFAMILY SSF51126 656 742 1.38E-38 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 PANTHER PTHR12338 87 1159 1.1E-31 T 14-09-2016 PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 PANTHER PTHR12338 1179 1493 1.1E-31 T 14-09-2016 PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 PANTHER PTHR12338:SF7 1179 1493 1.1E-31 T 14-09-2016 PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Gene3D G3DSA:2.40.128.130 1178 1491 3.2E-37 T 14-09-2016 IPR005546 Autotransporter beta-domain PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Pfam PF16168 Adhesin of bacterial autotransporter system, probable stalk 180 229 3.0E-6 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Pfam PF16168 Adhesin of bacterial autotransporter system, probable stalk 739 799 5.1E-18 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Pfam PF16168 Adhesin of bacterial autotransporter system, probable stalk 660 709 2.3E-6 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Pfam PF16168 Adhesin of bacterial autotransporter system, probable stalk 824 873 1.5E-7 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Pfam PF16168 Adhesin of bacterial autotransporter system, probable stalk 402 451 2.6E-7 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Pfam PF16168 Adhesin of bacterial autotransporter system, probable stalk 327 377 7.4E-8 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05250 e648a70a54035b4bdfe35357144b4349 1493 Pfam PF16168 Adhesin of bacterial autotransporter system, probable stalk 455 506 2.7E-7 T 14-09-2016 IPR030930 Adhesin of bacterial autotransporter system PAJ_RS05445 eb2e2af18fac64a102c2e6670e76c7b7 864 Gene3D G3DSA:3.40.50.300 431 432 2.0E-16 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05445 eb2e2af18fac64a102c2e6670e76c7b7 864 Gene3D G3DSA:3.40.50.300 93 154 2.0E-16 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05445 eb2e2af18fac64a102c2e6670e76c7b7 864 Gene3D G3DSA:3.40.50.300 231 345 2.0E-16 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05445 eb2e2af18fac64a102c2e6670e76c7b7 864 Gene3D G3DSA:3.40.50.300 615 696 2.0E-16 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05445 eb2e2af18fac64a102c2e6670e76c7b7 864 SUPERFAMILY SSF52540 616 696 9.25E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05445 eb2e2af18fac64a102c2e6670e76c7b7 864 SUPERFAMILY SSF52540 96 200 9.25E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05445 eb2e2af18fac64a102c2e6670e76c7b7 864 Pfam PF13166 AAA domain 627 705 2.2E-11 T 14-09-2016 IPR026866 P-loop containing protein CR006/PrrC PAJ_RS20840 1666c1c23a8bf4a2b4a664988ad8d76e 783 SMART SM01006 19 66 4.0E-13 T 14-09-2016 IPR019432 Siderophore biosynthesis protein, conserved domain PAJ_RS20840 1666c1c23a8bf4a2b4a664988ad8d76e 783 Pfam PF06276 Ferric iron reductase FhuF-like transporter 602 759 2.3E-43 T 14-09-2016 IPR022770 Ferric iron reductase FhuF domain PAJ_RS20840 1666c1c23a8bf4a2b4a664988ad8d76e 783 Pfam PF04183 IucA / IucC family 331 581 5.5E-80 T 14-09-2016 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 PAJ_RS20840 1666c1c23a8bf4a2b4a664988ad8d76e 783 SUPERFAMILY SSF55729 14 178 1.15E-45 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS20840 1666c1c23a8bf4a2b4a664988ad8d76e 783 PANTHER PTHR34384:SF5 201 783 1.2E-261 T 14-09-2016 PAJ_RS20840 1666c1c23a8bf4a2b4a664988ad8d76e 783 PANTHER PTHR34384 201 783 1.2E-261 T 14-09-2016 PAJ_RS20840 1666c1c23a8bf4a2b4a664988ad8d76e 783 Pfam PF13523 Acetyltransferase (GNAT) domain 24 165 4.3E-51 T 14-09-2016 PAJ_RS20840 1666c1c23a8bf4a2b4a664988ad8d76e 783 Gene3D G3DSA:3.40.630.30 14 183 1.0E-56 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 SUPERFAMILY SSF81624 2 138 1.7E-43 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 4.2E-32 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 SUPERFAMILY SSF46946 130 222 2.21E-28 T 14-09-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 14-09-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 SMART SM00898 2 115 5.2E-55 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 Pfam PF06827 Zinc finger found in FPG and IleRS 241 269 3.8E-10 T 14-09-2016 IPR010663 Zinc finger, FPG/IleRS-type PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 PANTHER PTHR22993 1 268 9.3E-136 T 14-09-2016 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 Gene3D G3DSA:3.20.190.10 2 129 1.8E-37 T 14-09-2016 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 Gene3D G3DSA:1.10.8.50 130 269 3.5E-51 T 14-09-2016 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 43.535 T 14-09-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 2.1E-26 T 14-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 SUPERFAMILY SSF57716 217 268 3.06E-18 T 14-09-2016 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 SMART SM01232 129 221 1.9E-45 T 14-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 PANTHER PTHR22993:SF15 1 268 9.3E-136 T 14-09-2016 PAJ_RS17285 7a59024405301723e52d90636ad7d918 269 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 3.7E-101 T 14-09-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 PANTHER PTHR11963:SF20 45 427 2.1E-247 T 14-09-2016 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 PRINTS PR00481 Cytosol aminopeptidase signature 250 271 1.7E-44 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 PRINTS PR00481 Cytosol aminopeptidase signature 191 208 1.7E-44 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 PRINTS PR00481 Cytosol aminopeptidase signature 272 292 1.7E-44 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 PRINTS PR00481 Cytosol aminopeptidase signature 213 234 1.7E-44 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 PRINTS PR00481 Cytosol aminopeptidase signature 300 315 1.7E-44 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 276 283 - T 14-09-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 SUPERFAMILY SSF53187 108 427 1.0E-103 T 14-09-2016 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 111 422 2.8E-99 T 14-09-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 PIRSF PIRSF036388 2 428 3.4E-225 T 14-09-2016 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 Hamap MF_00504 Peptidase B [pepB]. 4 428 64.342 T 14-09-2016 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 PANTHER PTHR11963 45 427 2.1E-247 T 14-09-2016 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 Gene3D G3DSA:3.40.630.10 108 427 2.1E-114 T 14-09-2016 PAJ_RS11910 3379232324856da398b1c1131dcdeed0 428 Pfam PF12404 Peptidase 6 82 2.0E-36 T 14-09-2016 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 3.4E-8 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 3.4E-8 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 3.4E-8 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 Gene3D G3DSA:1.10.1160.10 263 338 2.5E-37 T 14-09-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 PANTHER PTHR11451 7 247 2.6E-240 T 14-09-2016 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 SUPERFAMILY SSF52374 10 337 1.63E-101 T 14-09-2016 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 550 54.162 T 14-09-2016 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 PANTHER PTHR11451 267 552 2.6E-240 T 14-09-2016 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 552 1.8E-298 T 14-09-2016 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 2.1E-126 T 14-09-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 Gene3D G3DSA:2.40.240.10 463 548 9.3E-35 T 14-09-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 Gene3D G3DSA:3.90.800.10 101 209 3.1E-49 T 14-09-2016 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 529 5.2E-62 T 14-09-2016 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: REACT_71 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 SUPERFAMILY SSF50715 340 548 2.72E-79 T 14-09-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 Gene3D G3DSA:3.40.50.620 28 96 5.1E-43 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 Gene3D G3DSA:3.40.50.620 212 262 5.1E-43 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 PANTHER PTHR11451:SF29 7 247 2.6E-240 T 14-09-2016 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 PANTHER PTHR11451:SF29 267 552 2.6E-240 T 14-09-2016 PAJ_RS02600 68aa3a2b598725daa70c423efe9c0df4 555 Gene3D G3DSA:2.40.240.10 348 462 1.2E-48 T 14-09-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 PAJ_RS19300 6391a7e3d9d6d1da2fd0ed34be0b2a19 456 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 153 437 2.6E-94 T 14-09-2016 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 PAJ_RS19300 6391a7e3d9d6d1da2fd0ed34be0b2a19 456 Gene3D G3DSA:3.30.1360.60 4 81 8.3E-24 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS19300 6391a7e3d9d6d1da2fd0ed34be0b2a19 456 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS19300 6391a7e3d9d6d1da2fd0ed34be0b2a19 456 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 28 111 1.1E-21 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS19300 6391a7e3d9d6d1da2fd0ed34be0b2a19 456 PANTHER PTHR30175 1 456 1.4E-191 T 14-09-2016 PAJ_RS19300 6391a7e3d9d6d1da2fd0ed34be0b2a19 456 Pfam PF00367 phosphotransferase system, EIIB 9 41 1.5E-13 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS19300 6391a7e3d9d6d1da2fd0ed34be0b2a19 456 SUPERFAMILY SSF55604 7 79 3.27E-19 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS19300 6391a7e3d9d6d1da2fd0ed34be0b2a19 456 PANTHER PTHR30175:SF7 1 456 1.4E-191 T 14-09-2016 PAJ_RS19300 6391a7e3d9d6d1da2fd0ed34be0b2a19 456 Pfam PF02378 Phosphotransferase system, EIIC 110 395 1.8E-49 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS19300 6391a7e3d9d6d1da2fd0ed34be0b2a19 456 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 4 448 3.9E-195 T 14-09-2016 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 Pfam PF13188 PAS domain 213 261 1.3E-4 T 14-09-2016 IPR000014 PAS domain PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 SMART SM00387 418 529 1.3E-20 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 SUPERFAMILY SSF55890 322 373 2.48E-8 T 14-09-2016 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 473 6.1E-9 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 489 507 6.1E-9 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 526 6.1E-9 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 487 6.1E-9 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 SUPERFAMILY SSF55874 393 527 1.01E-25 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 SUPERFAMILY SSF55785 210 311 2.27E-6 T 14-09-2016 IPR000014 PAS domain PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 PANTHER PTHR24423:SF375 69 155 4.7E-72 T 14-09-2016 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 422 526 9.2E-16 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 Gene3D G3DSA:3.30.450.20 28 163 1.3E-37 T 14-09-2016 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 Pfam PF17203 Single cache domain 3 34 157 5.0E-17 T 14-09-2016 IPR033463 Single cache domain 3 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 SMART SM00091 210 280 1.0E-5 T 14-09-2016 IPR000014 PAS domain PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 SUPERFAMILY SSF103190 34 165 2.98E-28 T 14-09-2016 IPR029151 Periplasmic sensor domain-like PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 Gene3D G3DSA:3.30.450.20 211 309 6.2E-9 T 14-09-2016 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 320 370 6.5E-8 T 14-09-2016 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 Gene3D G3DSA:3.30.565.10 392 531 2.0E-26 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 PANTHER PTHR24423 69 155 4.7E-72 T 14-09-2016 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 PANTHER PTHR24423 188 526 4.7E-72 T 14-09-2016 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 PANTHER PTHR24423:SF375 188 526 4.7E-72 T 14-09-2016 PAJ_RS11425 84b0ef3462d8715b17489de1bb040f52 545 Gene3D G3DSA:1.10.287.130 310 376 8.3E-17 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17695 cbb37273805606d9f53e25951ec3300f 235 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS17695 cbb37273805606d9f53e25951ec3300f 235 PANTHER PTHR24220:SF560 12 230 2.1E-164 T 14-09-2016 PAJ_RS17695 cbb37273805606d9f53e25951ec3300f 235 SMART SM00382 35 215 9.4E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17695 cbb37273805606d9f53e25951ec3300f 235 Gene3D G3DSA:3.40.50.300 6 183 4.9E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17695 cbb37273805606d9f53e25951ec3300f 235 SUPERFAMILY SSF52540 11 221 6.02E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17695 cbb37273805606d9f53e25951ec3300f 235 Gene3D G3DSA:3.40.50.300 185 229 4.3E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17695 cbb37273805606d9f53e25951ec3300f 235 Pfam PF00005 ABC transporter 26 181 1.1E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS17695 cbb37273805606d9f53e25951ec3300f 235 PANTHER PTHR24220 12 230 2.1E-164 T 14-09-2016 PAJ_RS06595 adb3f4896638b12b3c0e83650c6e9ad0 104 PANTHER PTHR33843 1 97 2.2E-17 T 14-09-2016 PAJ_RS06595 adb3f4896638b12b3c0e83650c6e9ad0 104 SUPERFAMILY SSF52794 1 94 1.01E-17 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS06595 adb3f4896638b12b3c0e83650c6e9ad0 104 PANTHER PTHR33843:SF2 1 97 2.2E-17 T 14-09-2016 PAJ_RS06595 adb3f4896638b12b3c0e83650c6e9ad0 104 Gene3D G3DSA:3.40.50.270 1 94 2.5E-10 T 14-09-2016 PAJ_RS06595 adb3f4896638b12b3c0e83650c6e9ad0 104 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 83 1.6E-9 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS04450 cfef122519d51dcae1fa0dfdccca0837 137 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 14-09-2016 IPR019776 Flagellar basal body rod protein, conserved site PAJ_RS04450 cfef122519d51dcae1fa0dfdccca0837 137 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 135 6.6E-45 T 14-09-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 PAJ_RS04450 cfef122519d51dcae1fa0dfdccca0837 137 PANTHER PTHR30435:SF12 2 137 6.2E-51 T 14-09-2016 PAJ_RS04450 cfef122519d51dcae1fa0dfdccca0837 137 Pfam PF00460 Flagella basal body rod protein 10 39 1.1E-11 T 14-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PAJ_RS04450 cfef122519d51dcae1fa0dfdccca0837 137 PANTHER PTHR30435 2 137 6.2E-51 T 14-09-2016 PAJ_RS04450 cfef122519d51dcae1fa0dfdccca0837 137 PIRSF PIRSF002889 1 137 2.2E-43 T 14-09-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 PAJ_RS02570 75e74f4e33bc405315033bdf3991393e 555 Pfam PF13537 Glutamine amidotransferase domain 48 166 3.1E-41 T 14-09-2016 IPR017932 Glutamine amidotransferase type 2 domain PAJ_RS02570 75e74f4e33bc405315033bdf3991393e 555 Gene3D G3DSA:3.60.20.10 1 192 3.3E-68 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS02570 75e74f4e33bc405315033bdf3991393e 555 PANTHER PTHR11772 2 539 3.0E-301 T 14-09-2016 PAJ_RS02570 75e74f4e33bc405315033bdf3991393e 555 Pfam PF00733 Asparagine synthase 211 367 2.2E-58 T 14-09-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 PAJ_RS02570 75e74f4e33bc405315033bdf3991393e 555 SUPERFAMILY SSF52402 210 484 2.71E-75 T 14-09-2016 PAJ_RS02570 75e74f4e33bc405315033bdf3991393e 555 Gene3D G3DSA:3.40.50.620 193 511 2.4E-119 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS02570 75e74f4e33bc405315033bdf3991393e 555 SUPERFAMILY SSF56235 1 196 2.06E-58 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS02570 75e74f4e33bc405315033bdf3991393e 555 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 372 6.2E-122 T 14-09-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 PAJ_RS02570 75e74f4e33bc405315033bdf3991393e 555 PANTHER PTHR11772:SF11 2 539 3.0E-301 T 14-09-2016 PAJ_RS01140 ce1da372a216599aad3748f5c2e39789 323 PANTHER PTHR10314 7 320 4.9E-115 T 14-09-2016 PAJ_RS01140 ce1da372a216599aad3748f5c2e39789 323 SUPERFAMILY SSF53686 7 313 2.23E-92 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS01140 ce1da372a216599aad3748f5c2e39789 323 Gene3D G3DSA:3.40.50.1100 74 320 7.3E-72 T 14-09-2016 PAJ_RS01140 ce1da372a216599aad3748f5c2e39789 323 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 46 59 - T 14-09-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 PAJ_RS01140 ce1da372a216599aad3748f5c2e39789 323 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 308 1.2E-82 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS01140 ce1da372a216599aad3748f5c2e39789 323 PANTHER PTHR10314:SF17 7 320 4.9E-115 T 14-09-2016 PAJ_RS06350 0959425accb431412ecf5924cc0ac987 455 Gene3D G3DSA:3.90.1150.10 327 443 4.1E-36 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS06350 0959425accb431412ecf5924cc0ac987 455 SUPERFAMILY SSF53383 39 443 3.64E-105 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS06350 0959425accb431412ecf5924cc0ac987 455 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 254 292 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS06350 0959425accb431412ecf5924cc0ac987 455 Pfam PF00202 Aminotransferase class-III 46 439 1.3E-76 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS06350 0959425accb431412ecf5924cc0ac987 455 PANTHER PTHR11986:SF23 24 449 5.9E-143 T 14-09-2016 PAJ_RS06350 0959425accb431412ecf5924cc0ac987 455 PANTHER PTHR11986 24 449 5.9E-143 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS06350 0959425accb431412ecf5924cc0ac987 455 Gene3D G3DSA:3.40.640.10 79 326 3.8E-63 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS17900 d34e2a90a96ca10eadc259e47cbf1ae4 426 PANTHER PTHR11662:SF3 9 418 4.0E-119 T 14-09-2016 PAJ_RS17900 d34e2a90a96ca10eadc259e47cbf1ae4 426 PIRSF PIRSF002808 3 424 1.5E-35 T 14-09-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS17900 d34e2a90a96ca10eadc259e47cbf1ae4 426 PANTHER PTHR11662 9 418 4.0E-119 T 14-09-2016 PAJ_RS17900 d34e2a90a96ca10eadc259e47cbf1ae4 426 Gene3D G3DSA:1.20.1250.20 225 412 1.0E-30 T 14-09-2016 PAJ_RS17900 d34e2a90a96ca10eadc259e47cbf1ae4 426 SUPERFAMILY SSF103473 6 413 1.7E-87 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS17900 d34e2a90a96ca10eadc259e47cbf1ae4 426 Pfam PF07690 Major Facilitator Superfamily 18 375 1.4E-55 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS17900 d34e2a90a96ca10eadc259e47cbf1ae4 426 Gene3D G3DSA:1.20.1250.20 10 204 6.1E-41 T 14-09-2016 PAJ_RS08590 9c9f327411bb6e44b3ca686ce129aca5 130 PIRSF PIRSF018634 3 129 5.2E-29 T 14-09-2016 IPR009387 Toxin HigB-2 PAJ_RS08590 9c9f327411bb6e44b3ca686ce129aca5 130 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 6 125 2.4E-26 T 14-09-2016 IPR009387 Toxin HigB-2 PAJ_RS19815 268848a22bba9194941c5e0ddc225236 93 Gene3D G3DSA:1.10.260.40 3 23 5.1E-7 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS19815 268848a22bba9194941c5e0ddc225236 93 Pfam PF13693 Winged helix-turn-helix DNA-binding 7 23 2.1E-6 T 14-09-2016 PAJ_RS14625 e0f63aa874b218a4c9d359851efe3e90 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.1E-24 T 14-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PAJ_RS14625 e0f63aa874b218a4c9d359851efe3e90 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 1.0E-15 T 14-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PAJ_RS14625 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 2.8E-17 T 14-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PAJ_RS14625 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 2.8E-17 T 14-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PAJ_RS14625 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 2.8E-17 T 14-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PAJ_RS14625 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 2.8E-17 T 14-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PAJ_RS14625 e0f63aa874b218a4c9d359851efe3e90 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 14-09-2016 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS14625 e0f63aa874b218a4c9d359851efe3e90 71 PANTHER PTHR21109 1 71 2.6E-27 T 14-09-2016 PAJ_RS14625 e0f63aa874b218a4c9d359851efe3e90 71 Pfam PF01165 Ribosomal protein S21 4 56 5.1E-22 T 14-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PAJ_RS14625 e0f63aa874b218a4c9d359851efe3e90 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.283 T 14-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PAJ_RS11770 653572b24bc37b834d69a3fd0783e5b7 264 SUPERFAMILY SSF101082 67 232 3.14E-6 T 14-09-2016 IPR023220 Type IV secretion system, VirB5-domain PAJ_RS11770 653572b24bc37b834d69a3fd0783e5b7 264 TIGRFAM TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ 17 260 5.1E-75 T 14-09-2016 IPR014147 Type IV conjugative transfer protein TrbJ PAJ_RS00720 f951684acd736e9e792a2434d60da569 285 Pfam PF01148 Cytidylyltransferase family 3 278 1.1E-69 T 14-09-2016 PAJ_RS00720 f951684acd736e9e792a2434d60da569 285 PANTHER PTHR13773 2 279 3.4E-87 T 14-09-2016 PAJ_RS00720 f951684acd736e9e792a2434d60da569 285 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 239 265 - T 14-09-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 Gene3D G3DSA:2.60.40.180 26 138 2.5E-39 T 14-09-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 PANTHER PTHR10395:SF7 18 138 1.6E-38 T 14-09-2016 PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 Pfam PF00576 HIUase/Transthyretin family 30 138 7.3E-36 T 14-09-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 28 138 1.9E-41 T 14-09-2016 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394 PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 PANTHER PTHR10395 18 138 1.6E-38 T 14-09-2016 PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 SUPERFAMILY SSF49472 23 139 1.06E-39 T 14-09-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 PRINTS PR00189 Transthyretin signature 29 49 9.6E-13 T 14-09-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 PRINTS PR00189 Transthyretin signature 117 139 9.6E-13 T 14-09-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 PRINTS PR00189 Transthyretin signature 61 86 9.6E-13 T 14-09-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 SMART SM00095 25 139 1.8E-4 T 14-09-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PAJ_RS06155 0b339829ed6d42e7f4d0451d1eac8779 139 ProSitePatterns PS00769 Transthyretin signature 2. 122 134 - T 14-09-2016 IPR023419 Transthyretin, conserved site PAJ_RS11605 5cd503bb28da7785ae70606ace6e2155 328 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS11605 5cd503bb28da7785ae70606ace6e2155 328 SUPERFAMILY SSF50331 249 318 1.02E-6 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS11605 5cd503bb28da7785ae70606ace6e2155 328 PANTHER PTHR24220:SF151 9 240 4.6E-116 T 14-09-2016 PAJ_RS11605 5cd503bb28da7785ae70606ace6e2155 328 SMART SM00382 32 216 1.2E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS11605 5cd503bb28da7785ae70606ace6e2155 328 Pfam PF08402 TOBE domain 258 320 5.8E-5 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PAJ_RS11605 5cd503bb28da7785ae70606ace6e2155 328 PANTHER PTHR24220 9 240 4.6E-116 T 14-09-2016 PAJ_RS11605 5cd503bb28da7785ae70606ace6e2155 328 Pfam PF00005 ABC transporter 23 166 7.7E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS11605 5cd503bb28da7785ae70606ace6e2155 328 SUPERFAMILY SSF52540 9 245 2.37E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11605 5cd503bb28da7785ae70606ace6e2155 328 Gene3D G3DSA:3.40.50.300 6 243 1.4E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04625 aa075060f808901b2a15dd8e31151d49 415 Gene3D G3DSA:3.50.50.60 101 327 3.2E-35 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04625 aa075060f808901b2a15dd8e31151d49 415 SUPERFAMILY SSF51905 13 205 6.8E-22 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04625 aa075060f808901b2a15dd8e31151d49 415 SUPERFAMILY SSF51905 151 333 2.49E-26 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04625 aa075060f808901b2a15dd8e31151d49 415 PANTHER PTHR22912 189 299 4.6E-25 T 14-09-2016 PAJ_RS04625 aa075060f808901b2a15dd8e31151d49 415 PANTHER PTHR22912 51 173 4.6E-25 T 14-09-2016 PAJ_RS04625 aa075060f808901b2a15dd8e31151d49 415 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 96 114 8.4E-9 T 14-09-2016 PAJ_RS04625 aa075060f808901b2a15dd8e31151d49 415 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 276 298 8.4E-9 T 14-09-2016 PAJ_RS04625 aa075060f808901b2a15dd8e31151d49 415 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 8.4E-9 T 14-09-2016 PAJ_RS04625 aa075060f808901b2a15dd8e31151d49 415 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 319 4.0E-59 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04625 aa075060f808901b2a15dd8e31151d49 415 Gene3D G3DSA:3.50.50.60 11 100 4.7E-12 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00415 04634071dc42666e8cd3e8bf95a2598a 183 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 57 167 7.8E-21 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS00415 04634071dc42666e8cd3e8bf95a2598a 183 PANTHER PTHR30417 1 178 3.7E-88 T 14-09-2016 PAJ_RS00415 04634071dc42666e8cd3e8bf95a2598a 183 PANTHER PTHR30417:SF4 1 178 3.7E-88 T 14-09-2016 PAJ_RS00415 04634071dc42666e8cd3e8bf95a2598a 183 Gene3D G3DSA:3.40.80.10 3 178 2.4E-72 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS00415 04634071dc42666e8cd3e8bf95a2598a 183 SUPERFAMILY SSF55846 3 178 5.76E-69 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS00415 04634071dc42666e8cd3e8bf95a2598a 183 SMART SM00644 16 166 4.9E-55 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS05050 122027867dc9fbe863e646967de1f8af 424 Gene3D G3DSA:1.20.1250.20 29 221 2.3E-30 T 14-09-2016 PAJ_RS05050 122027867dc9fbe863e646967de1f8af 424 Gene3D G3DSA:1.20.1250.20 240 419 2.2E-23 T 14-09-2016 PAJ_RS05050 122027867dc9fbe863e646967de1f8af 424 SUPERFAMILY SSF103473 17 423 6.15E-74 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS05050 122027867dc9fbe863e646967de1f8af 424 Pfam PF07690 Major Facilitator Superfamily 42 295 9.5E-35 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS05050 122027867dc9fbe863e646967de1f8af 424 PANTHER PTHR23508 6 421 1.1E-65 T 14-09-2016 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 PANTHER PTHR30034 2 335 3.0E-150 T 14-09-2016 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 321 2.9E-114 T 14-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 7.8E-32 T 14-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 7.8E-32 T 14-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 213 231 7.8E-32 T 14-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 7.8E-32 T 14-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 Gene3D G3DSA:2.30.330.10 243 323 3.0E-6 T 14-09-2016 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 253 321 7.3E-16 T 14-09-2016 IPR001543 Surface presentation of antigen (SpoA) PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 PANTHER PTHR30034:SF0 2 335 3.0E-150 T 14-09-2016 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 SUPERFAMILY SSF103039 49 231 2.59E-19 T 14-09-2016 IPR028976 CheC-like domain PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 Pfam PF02154 Flagellar motor switch protein FliM 38 231 9.7E-78 T 14-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 PIRSF PIRSF002888 2 331 5.1E-97 T 14-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PAJ_RS08910 6dcce0e4186b7fc9f1083ad79957596f 335 SUPERFAMILY SSF101801 249 323 2.88E-12 T 14-09-2016 IPR001543 Surface presentation of antigen (SpoA) PAJ_RS03685 06bce243085318250b5de40ff2f7d0f4 440 SUPERFAMILY SSF140570 119 281 2.35E-75 T 14-09-2016 IPR033440 Chromosome partition protein MukF, middle domain PAJ_RS03685 06bce243085318250b5de40ff2f7d0f4 440 PIRSF PIRSF018282 1 440 9.9E-245 T 14-09-2016 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 PAJ_RS03685 06bce243085318250b5de40ff2f7d0f4 440 Pfam PF17193 MukF C-terminal domain 283 440 5.5E-78 T 14-09-2016 IPR033441 Chromosome partition protein MukF, C-terminal domain PAJ_RS03685 06bce243085318250b5de40ff2f7d0f4 440 Pfam PF17192 MukF middle domain 121 281 1.2E-83 T 14-09-2016 IPR033440 Chromosome partition protein MukF, middle domain PAJ_RS03685 06bce243085318250b5de40ff2f7d0f4 440 Pfam PF03882 MukF winged-helix domain 3 117 2.3E-58 T 14-09-2016 IPR033439 Chromosome partition protein MukF, winged-helix domain PAJ_RS03685 06bce243085318250b5de40ff2f7d0f4 440 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 1 440 55.632 T 14-09-2016 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 PAJ_RS03685 06bce243085318250b5de40ff2f7d0f4 440 SUPERFAMILY SSF46785 8 118 1.81E-48 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS03685 06bce243085318250b5de40ff2f7d0f4 440 Gene3D G3DSA:1.10.10.10 24 118 2.5E-49 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 SUPERFAMILY SSF52467 181 342 9.64E-56 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 167 2.2E-57 T 14-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 8.1E-47 T 14-09-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 14-09-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 PANTHER PTHR18968 1 545 6.7E-262 T 14-09-2016 PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 Gene3D G3DSA:3.40.50.970 1 171 9.7E-74 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 188 321 1.5E-39 T 14-09-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 Gene3D G3DSA:3.40.50.970 335 537 2.4E-71 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 546 2.5E-215 T 14-09-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 Gene3D G3DSA:3.40.50.1220 184 334 4.1E-55 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 SUPERFAMILY SSF52518 1 174 1.51E-63 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 PANTHER PTHR18968:SF116 1 545 6.7E-262 T 14-09-2016 PAJ_RS16890 d3da693d961f770c36ca6725e2dcaae3 548 SUPERFAMILY SSF52518 357 545 1.47E-63 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS12880 60ed889feaf85bbe03f7dde7409a438f 336 Pfam PF04389 Peptidase family M28 97 313 2.9E-21 T 14-09-2016 IPR007484 Peptidase M28 PAJ_RS12880 60ed889feaf85bbe03f7dde7409a438f 336 Gene3D G3DSA:3.40.630.10 30 332 2.6E-38 T 14-09-2016 PAJ_RS12880 60ed889feaf85bbe03f7dde7409a438f 336 PANTHER PTHR12147 291 306 5.2E-19 T 14-09-2016 PAJ_RS12880 60ed889feaf85bbe03f7dde7409a438f 336 PANTHER PTHR12147 15 272 5.2E-19 T 14-09-2016 PAJ_RS12880 60ed889feaf85bbe03f7dde7409a438f 336 SUPERFAMILY SSF53187 38 306 5.71E-31 T 14-09-2016 PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.7E-6 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.7E-6 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 Gene3D G3DSA:1.10.10.10 5 57 7.9E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 SUPERFAMILY SSF46785 5 68 6.0E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 SUPERFAMILY SSF100950 75 233 2.93E-28 T 14-09-2016 PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 SMART SM00420 6 58 1.3E-24 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.8E-18 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 Pfam PF00455 DeoR C terminal sensor domain 77 231 1.5E-50 T 14-09-2016 IPR014036 DeoR C-terminal sensor domain PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 14-09-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 PANTHER PTHR30363 1 252 6.8E-143 T 14-09-2016 PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 PANTHER PTHR30363:SF5 1 252 6.8E-143 T 14-09-2016 PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 SMART SM01134 73 233 2.2E-68 T 14-09-2016 PAJ_RS09750 b8b1cf97f17ed8fe55a21a28a8a2553b 256 Gene3D G3DSA:3.40.50.1360 76 223 5.4E-11 T 14-09-2016 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 387 1.1E-8 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 8.7E-260 T 14-09-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 Gene3D G3DSA:3.40.1190.10 92 312 1.5E-82 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 SUPERFAMILY SSF51984 1 90 3.01E-24 T 14-09-2016 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 SUPERFAMILY SSF53623 95 308 2.52E-47 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 59.607 T 14-09-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 Gene3D G3DSA:3.90.190.20 313 449 1.9E-35 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 SUPERFAMILY SSF53244 312 449 1.05E-35 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 Pfam PF08245 Mur ligase middle domain 108 291 1.3E-16 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 PANTHER PTHR23135 1 449 1.2E-304 T 14-09-2016 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 PANTHER PTHR23135:SF17 1 449 1.2E-304 T 14-09-2016 PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 Gene3D G3DSA:3.40.50.720 1 90 4.6E-40 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15220 6887d555d90a4d591b070e34bc6f4631 451 Pfam PF01225 Mur ligase family, catalytic domain 2 101 4.1E-19 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS08355 8af3874d846756c150383709a801df7b 443 Gene3D G3DSA:2.70.70.10 270 412 4.5E-50 T 14-09-2016 PAJ_RS08355 8af3874d846756c150383709a801df7b 443 SMART SM00257 100 145 6.5E-4 T 14-09-2016 IPR018392 LysM domain PAJ_RS08355 8af3874d846756c150383709a801df7b 443 Pfam PF04225 Opacity-associated protein A LysM-like domain 99 177 2.0E-8 T 14-09-2016 IPR007340 Opacity-associated protein A PAJ_RS08355 8af3874d846756c150383709a801df7b 443 PANTHER PTHR21666:SF207 1 433 1.2E-229 T 14-09-2016 PAJ_RS08355 8af3874d846756c150383709a801df7b 443 PANTHER PTHR21666 1 433 1.2E-229 T 14-09-2016 PAJ_RS08355 8af3874d846756c150383709a801df7b 443 Pfam PF08525 Opacity-associated protein A N-terminal motif 12 39 2.0E-9 T 14-09-2016 IPR013731 Opacity-associated protein A, N-terminal PAJ_RS08355 8af3874d846756c150383709a801df7b 443 SUPERFAMILY SSF51261 167 411 4.13E-70 T 14-09-2016 IPR011055 Duplicated hybrid motif PAJ_RS08355 8af3874d846756c150383709a801df7b 443 Pfam PF01551 Peptidase family M23 316 410 4.6E-34 T 14-09-2016 IPR016047 Peptidase M23 PAJ_RS08355 8af3874d846756c150383709a801df7b 443 Gene3D G3DSA:3.10.350.10 100 142 1.9E-5 T 14-09-2016 IPR018392 LysM domain PAJ_RS16125 1d10fa5819bb3492b35a95087c92e259 133 Gene3D G3DSA:3.10.290.10 8 103 1.2E-37 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS16125 1d10fa5819bb3492b35a95087c92e259 133 PANTHER PTHR11079:SF70 1 62 1.2E-29 T 14-09-2016 PAJ_RS16125 1d10fa5819bb3492b35a95087c92e259 133 PANTHER PTHR11079 109 115 1.2E-29 T 14-09-2016 PAJ_RS16125 1d10fa5819bb3492b35a95087c92e259 133 PANTHER PTHR11079 1 62 1.2E-29 T 14-09-2016 PAJ_RS16125 1d10fa5819bb3492b35a95087c92e259 133 PANTHER PTHR11079:SF70 109 115 1.2E-29 T 14-09-2016 PAJ_RS16125 1d10fa5819bb3492b35a95087c92e259 133 SMART SM00363 9 72 1.2E-11 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS16125 1d10fa5819bb3492b35a95087c92e259 133 SUPERFAMILY SSF55174 9 103 4.58E-30 T 14-09-2016 PAJ_RS16125 1d10fa5819bb3492b35a95087c92e259 133 PIRSF PIRSF016821 6 133 5.9E-41 T 14-09-2016 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 PAJ_RS16125 1d10fa5819bb3492b35a95087c92e259 133 Pfam PF01479 S4 domain 9 53 1.9E-13 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 SUPERFAMILY SSF46785 5 75 7.3E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 PANTHER PTHR30363:SF11 1 262 9.3E-75 T 14-09-2016 PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 Pfam PF00455 DeoR C terminal sensor domain 87 244 1.6E-45 T 14-09-2016 IPR014036 DeoR C-terminal sensor domain PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.9E-10 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.9E-10 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 SMART SM00420 6 58 1.2E-16 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 SMART SM01134 85 245 1.5E-55 T 14-09-2016 PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 PANTHER PTHR30363 1 262 9.3E-75 T 14-09-2016 PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 14-09-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 Gene3D G3DSA:3.40.50.1360 89 224 2.4E-7 T 14-09-2016 PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 Gene3D G3DSA:1.10.10.10 5 85 3.2E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 SUPERFAMILY SSF100950 87 245 1.36E-28 T 14-09-2016 PAJ_RS11450 edc4a7e857f8739e773c4c5b72398cc6 276 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 3.5E-17 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS00755 0218826a64ba667abd374fed7b00de5e 382 PANTHER PTHR30372:SF0 4 382 2.8E-141 T 14-09-2016 PAJ_RS00755 0218826a64ba667abd374fed7b00de5e 382 SUPERFAMILY SSF53756 8 376 4.4E-28 T 14-09-2016 PAJ_RS00755 0218826a64ba667abd374fed7b00de5e 382 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 5 381 43.132 T 14-09-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 PAJ_RS00755 0218826a64ba667abd374fed7b00de5e 382 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 379 1.5E-171 T 14-09-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 PAJ_RS00755 0218826a64ba667abd374fed7b00de5e 382 Pfam PF02684 Lipid-A-disaccharide synthetase 8 376 5.7E-144 T 14-09-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 PAJ_RS00755 0218826a64ba667abd374fed7b00de5e 382 PANTHER PTHR30372 4 382 2.8E-141 T 14-09-2016 PAJ_RS00755 0218826a64ba667abd374fed7b00de5e 382 Gene3D G3DSA:3.40.50.2000 171 352 6.3E-4 T 14-09-2016 PAJ_RS04410 85f4451727b987f702d0036bd5ddb698 196 Gene3D G3DSA:3.40.630.30 11 186 1.6E-41 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS04410 85f4451727b987f702d0036bd5ddb698 196 Pfam PF13302 Acetyltransferase (GNAT) domain 17 162 4.5E-16 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS04410 85f4451727b987f702d0036bd5ddb698 196 PANTHER PTHR13256 9 190 2.2E-80 T 14-09-2016 PAJ_RS04410 85f4451727b987f702d0036bd5ddb698 196 SUPERFAMILY SSF55729 12 185 1.04E-39 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS04410 85f4451727b987f702d0036bd5ddb698 196 PANTHER PTHR13256:SF24 9 190 2.2E-80 T 14-09-2016 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 SMART SM01240 7 473 0.0 T 14-09-2016 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 Gene3D G3DSA:3.20.20.70 2 485 1.7E-192 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 4.0E-196 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 5.1E-160 T 14-09-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 14-09-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 PANTHER PTHR11911 1 281 2.4E-246 T 14-09-2016 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 PIRSF PIRSF000130 1 488 4.3E-195 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 PANTHER PTHR11911 299 486 2.4E-246 T 14-09-2016 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 SUPERFAMILY SSF51412 217 477 9.81E-125 T 14-09-2016 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 SUPERFAMILY SSF51412 1 90 9.81E-125 T 14-09-2016 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 SMART SM00116 158 206 2.5E-5 T 14-09-2016 IPR000644 CBS domain PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 SMART SM00116 96 144 3.7E-11 T 14-09-2016 IPR000644 CBS domain PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 SUPERFAMILY SSF54631 95 203 2.02E-24 T 14-09-2016 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 83.852 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 PANTHER PTHR11911:SF6 1 281 2.4E-246 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 PANTHER PTHR11911:SF6 299 486 2.4E-246 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 Pfam PF00571 CBS domain 95 140 2.8E-8 T 14-09-2016 IPR000644 CBS domain PAJ_RS11815 4c2a9306068e79a65f8fac510ad4fcbe 488 Pfam PF00571 CBS domain 149 202 2.0E-4 T 14-09-2016 IPR000644 CBS domain PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 PANTHER PTHR30173:SF1 1 186 1.0E-53 T 14-09-2016 PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 Gene3D G3DSA:1.10.1740.10 3 109 1.3E-36 T 14-09-2016 PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 189 3.5E-99 T 14-09-2016 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 Pfam PF04542 Sigma-70 region 2 25 91 5.5E-17 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 Pfam PF08281 Sigma-70, region 4 130 180 1.9E-18 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 SUPERFAMILY SSF88946 2 104 1.51E-30 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 183 2.6E-29 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 Gene3D G3DSA:1.10.10.10 122 187 5.7E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 PANTHER PTHR30173 1 186 1.0E-53 T 14-09-2016 PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 SUPERFAMILY SSF88659 122 183 6.92E-18 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS12070 5ab8a5020a542f5dc54e6f5fa7f2fa22 192 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 14-09-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS17340 597b7ffaa417675a15424d505a4aed38 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 8.4E-132 T 14-09-2016 IPR005229 Conserved hypothetical protein CHP00255 PAJ_RS17340 597b7ffaa417675a15424d505a4aed38 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 6.1E-44 T 14-09-2016 IPR013527 YicC-like, N-terminal PAJ_RS17340 597b7ffaa417675a15424d505a4aed38 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 1.6E-34 T 14-09-2016 IPR013551 Domain of unknown function DUF1732 PAJ_RS17340 597b7ffaa417675a15424d505a4aed38 287 PANTHER PTHR30636 1 287 3.0E-112 T 14-09-2016 PAJ_RS18465 9e09a24722c4bc57b95ab6778006917d 330 Gene3D G3DSA:3.40.50.1820 28 329 4.9E-34 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS18465 9e09a24722c4bc57b95ab6778006917d 330 PANTHER PTHR11614:SF100 5 329 5.5E-144 T 14-09-2016 PAJ_RS18465 9e09a24722c4bc57b95ab6778006917d 330 Pfam PF12146 Serine aminopeptidase, S33 52 312 1.7E-54 T 14-09-2016 IPR022742 Serine aminopeptidase, S33 PAJ_RS18465 9e09a24722c4bc57b95ab6778006917d 330 PANTHER PTHR11614 5 329 5.5E-144 T 14-09-2016 PAJ_RS18465 9e09a24722c4bc57b95ab6778006917d 330 SUPERFAMILY SSF53474 8 329 3.24E-35 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS12835 b4ca62732665c96ee7e7d1f03f37678c 346 PANTHER PTHR13326 3 343 4.5E-73 T 14-09-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS12835 b4ca62732665c96ee7e7d1f03f37678c 346 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 2 338 3.0E-76 T 14-09-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS12835 b4ca62732665c96ee7e7d1f03f37678c 346 SUPERFAMILY SSF55120 2 336 3.16E-97 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS12835 b4ca62732665c96ee7e7d1f03f37678c 346 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 187 334 1.5E-16 T 14-09-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS12835 b4ca62732665c96ee7e7d1f03f37678c 346 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 4 178 4.9E-43 T 14-09-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS12835 b4ca62732665c96ee7e7d1f03f37678c 346 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 1 339 27.956 T 14-09-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS12835 b4ca62732665c96ee7e7d1f03f37678c 346 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 73 86 - T 14-09-2016 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 SMART SM01097 3 133 2.0E-91 T 14-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 Pfam PF00117 Glutamine amidotransferase class-I 198 372 5.3E-49 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 2.2E-39 T 14-09-2016 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 2.2E-39 T 14-09-2016 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 2.2E-39 T 14-09-2016 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 2.2E-39 T 14-09-2016 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 2.2E-39 T 14-09-2016 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 SUPERFAMILY SSF52021 3 143 8.76E-57 T 14-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 SUPERFAMILY SSF52317 153 375 5.96E-64 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 Gene3D G3DSA:3.40.50.880 154 376 7.1E-84 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 1.1E-10 T 14-09-2016 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 1.1E-10 T 14-09-2016 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 1.1E-10 T 14-09-2016 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 8.6E-150 T 14-09-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 1.1E-52 T 14-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 Gene3D G3DSA:3.50.30.20 4 147 4.4E-63 T 14-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 PANTHER PTHR11405 190 378 2.5E-253 T 14-09-2016 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 PANTHER PTHR11405 3 173 2.5E-253 T 14-09-2016 PAJ_RS00095 010710f73561b85c51ddb4181b38a591 382 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 48.189 T 14-09-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 PANTHER PTHR12128 1 291 1.6E-143 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 PANTHER PTHR12128:SF34 1 291 1.6E-143 T 14-09-2016 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 1.4E-33 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 1.4E-33 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 1.4E-33 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 1.4E-33 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 SMART SM01130 1 290 5.3E-141 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 SUPERFAMILY SSF51569 1 290 5.34E-97 T 14-09-2016 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 287 6.3E-119 T 14-09-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 14-09-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 14-09-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 Gene3D G3DSA:3.20.20.70 1 291 4.2E-116 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 Pfam PF00701 Dihydrodipicolinate synthetase family 2 287 1.1E-113 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 PIRSF PIRSF001365 1 292 3.2E-95 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS11560 576d602dbf1ef757e03ea0e6c2d7675f 292 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 288 65.201 T 14-09-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS17220 b4ddd2cbb73462b31b8ede2716c9fb43 322 Gene3D G3DSA:3.40.50.2000 170 321 3.3E-38 T 14-09-2016 PAJ_RS17220 b4ddd2cbb73462b31b8ede2716c9fb43 322 PANTHER PTHR30160 1 298 2.1E-152 T 14-09-2016 PAJ_RS17220 b4ddd2cbb73462b31b8ede2716c9fb43 322 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 75 304 6.8E-75 T 14-09-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 PAJ_RS17220 b4ddd2cbb73462b31b8ede2716c9fb43 322 Gene3D G3DSA:3.40.50.2000 1 158 1.1E-30 T 14-09-2016 PAJ_RS17220 b4ddd2cbb73462b31b8ede2716c9fb43 322 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 3 319 3.2E-126 T 14-09-2016 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 KEGG: 00231+2.-.-.-|UniPathway: UPA00958 PAJ_RS17220 b4ddd2cbb73462b31b8ede2716c9fb43 322 SUPERFAMILY SSF53756 1 321 4.39E-75 T 14-09-2016 PAJ_RS17220 b4ddd2cbb73462b31b8ede2716c9fb43 322 PANTHER PTHR30160:SF8 1 298 2.1E-152 T 14-09-2016 PAJ_RS10305 0e9c816ff6c8321761e6a45900da9e95 364 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 152 359 3.0E-37 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10305 0e9c816ff6c8321761e6a45900da9e95 364 PANTHER PTHR30465 1 45 1.3E-215 T 14-09-2016 PAJ_RS10305 0e9c816ff6c8321761e6a45900da9e95 364 PANTHER PTHR30465:SF66 70 361 1.3E-215 T 14-09-2016 PAJ_RS10305 0e9c816ff6c8321761e6a45900da9e95 364 PANTHER PTHR30465:SF66 1 45 1.3E-215 T 14-09-2016 PAJ_RS10305 0e9c816ff6c8321761e6a45900da9e95 364 SUPERFAMILY SSF161098 129 346 1.31E-15 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10305 0e9c816ff6c8321761e6a45900da9e95 364 PANTHER PTHR30465 70 361 1.3E-215 T 14-09-2016 PAJ_RS10305 0e9c816ff6c8321761e6a45900da9e95 364 Gene3D G3DSA:1.10.3720.10 127 351 3.9E-14 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07395 bc63c6960b33aad2c0183d0d77d2394f 199 SUPERFAMILY SSF52218 1 197 1.03E-58 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS07395 bc63c6960b33aad2c0183d0d77d2394f 199 PANTHER PTHR10204:SF16 1 199 7.2E-106 T 14-09-2016 PAJ_RS07395 bc63c6960b33aad2c0183d0d77d2394f 199 Gene3D G3DSA:3.40.50.360 1 197 4.1E-64 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS07395 bc63c6960b33aad2c0183d0d77d2394f 199 Pfam PF02525 Flavodoxin-like fold 3 195 1.1E-46 T 14-09-2016 IPR003680 Flavodoxin-like fold PAJ_RS07395 bc63c6960b33aad2c0183d0d77d2394f 199 PANTHER PTHR10204 1 199 7.2E-106 T 14-09-2016 PAJ_RS07395 bc63c6960b33aad2c0183d0d77d2394f 199 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 197 31.451 T 14-09-2016 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 Gene3D G3DSA:3.40.1410.10 67 239 8.0E-35 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 Pfam PF07702 UTRA domain 96 231 6.9E-23 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 6.6E-11 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 SMART SM00866 95 236 1.6E-18 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 SMART SM00345 12 71 6.9E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 PANTHER PTHR11751 124 148 1.3E-13 T 14-09-2016 PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 SUPERFAMILY SSF46785 9 80 1.09E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 Gene3D G3DSA:1.10.10.10 8 66 7.1E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 SUPERFAMILY SSF64288 86 237 4.4E-29 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 PANTHER PTHR11751:SF333 124 148 1.3E-13 T 14-09-2016 PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 PANTHER PTHR11751:SF333 14 73 1.3E-13 T 14-09-2016 PAJ_RS13500 c49fc894ab9b0bd10c1272895943a195 244 PANTHER PTHR11751 14 73 1.3E-13 T 14-09-2016 PAJ_RS17750 40539b93ce373c7dfbb576e3e4a30246 336 Gene3D G3DSA:3.40.50.2300 153 285 1.8E-26 T 14-09-2016 PAJ_RS17750 40539b93ce373c7dfbb576e3e4a30246 336 Pfam PF13407 Periplasmic binding protein domain 39 291 4.5E-46 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS17750 40539b93ce373c7dfbb576e3e4a30246 336 Gene3D G3DSA:3.40.50.2300 30 152 1.9E-26 T 14-09-2016 PAJ_RS17750 40539b93ce373c7dfbb576e3e4a30246 336 SUPERFAMILY SSF53822 33 330 2.08E-57 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS17750 40539b93ce373c7dfbb576e3e4a30246 336 PANTHER PTHR32196:SF36 1 327 1.0E-92 T 14-09-2016 PAJ_RS17750 40539b93ce373c7dfbb576e3e4a30246 336 PANTHER PTHR32196 1 327 1.0E-92 T 14-09-2016 PAJ_RS03740 0c066b14ebcbc31db801991273d9cc24 262 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03740 0c066b14ebcbc31db801991273d9cc24 262 PANTHER PTHR24220 17 249 8.5E-141 T 14-09-2016 PAJ_RS03740 0c066b14ebcbc31db801991273d9cc24 262 SUPERFAMILY SSF52540 17 217 5.33E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03740 0c066b14ebcbc31db801991273d9cc24 262 Pfam PF00005 ABC transporter 31 165 7.7E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03740 0c066b14ebcbc31db801991273d9cc24 262 Gene3D G3DSA:3.40.50.300 15 216 3.0E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03740 0c066b14ebcbc31db801991273d9cc24 262 PANTHER PTHR24220:SF365 17 249 8.5E-141 T 14-09-2016 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB GO:0005215|GO:0005524|GO:0005886|GO:0006810 PAJ_RS03740 0c066b14ebcbc31db801991273d9cc24 262 SMART SM00382 40 228 2.5E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS05610 d133f99dd915c8d5a388778eeeec3d1a 273 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 22 232 1.8E-47 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PAJ_RS05610 d133f99dd915c8d5a388778eeeec3d1a 273 SUPERFAMILY SSF53790 19 257 3.53E-78 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PAJ_RS05610 d133f99dd915c8d5a388778eeeec3d1a 273 PANTHER PTHR21091:SF16 18 264 1.0E-77 T 14-09-2016 PAJ_RS05610 d133f99dd915c8d5a388778eeeec3d1a 273 Gene3D G3DSA:3.40.1010.10 20 136 3.8E-43 T 14-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PAJ_RS05610 d133f99dd915c8d5a388778eeeec3d1a 273 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 26 40 - T 14-09-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS05610 d133f99dd915c8d5a388778eeeec3d1a 273 Gene3D G3DSA:3.30.950.10 137 257 9.2E-45 T 14-09-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 PAJ_RS05610 d133f99dd915c8d5a388778eeeec3d1a 273 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 101 134 - T 14-09-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS05610 d133f99dd915c8d5a388778eeeec3d1a 273 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 21 255 2.3E-89 T 14-09-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PAJ_RS05610 d133f99dd915c8d5a388778eeeec3d1a 273 PANTHER PTHR21091 18 264 1.0E-77 T 14-09-2016 PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 Pfam PF13404 AsnC-type helix-turn-helix domain 8 49 1.2E-11 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 PANTHER PTHR30154:SF28 1 157 2.3E-46 T 14-09-2016 PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 SUPERFAMILY SSF54909 68 157 4.56E-21 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 SMART SM00344 8 117 2.8E-30 T 14-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 1.1E-10 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 1.1E-10 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 1.1E-10 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 Gene3D G3DSA:1.10.10.10 9 60 9.3E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 Gene3D G3DSA:3.30.70.920 61 156 4.5E-26 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 Pfam PF01037 Lrp/AsnC ligand binding domain 78 148 2.8E-21 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 SUPERFAMILY SSF46785 7 68 1.99E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12600 29cff5c7893b88a7014861458504a605 157 PANTHER PTHR30154 1 157 2.3E-46 T 14-09-2016 PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 Gene3D G3DSA:3.40.50.300 5 218 7.3E-11 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 Gene3D G3DSA:3.40.1390.20 220 360 2.4E-31 T 14-09-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 Gene3D G3DSA:3.40.50.10750 519 677 1.1E-67 T 14-09-2016 PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 PANTHER PTHR23406:SF3 173 708 1.9E-57 T 14-09-2016 PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 PANTHER PTHR23406 173 708 1.9E-57 T 14-09-2016 PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 SUPERFAMILY SSF75138 224 348 6.02E-26 T 14-09-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 401 701 2.0E-136 T 14-09-2016 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 SUPERFAMILY SSF52540 1 235 6.37E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 SUPERFAMILY SSF53659 387 704 4.52E-95 T 14-09-2016 PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 Pfam PF01515 Phosphate acetyl/butaryl transferase 386 701 1.8E-128 T 14-09-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 Pfam PF07085 DRTGG domain 228 339 4.4E-30 T 14-09-2016 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 Pfam PF13500 AAA domain 1 224 1.2E-45 T 14-09-2016 PAJ_RS10670 6b2da5d8b1400b638d259349f680767b 709 PIRSF PIRSF006107 1 709 0.0 T 14-09-2016 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 Gene3D G3DSA:2.40.50.140 16 154 3.4E-48 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 SUPERFAMILY SSF50249 13 155 1.44E-46 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 PANTHER PTHR22594:SF4 1 503 1.9E-284 T 14-09-2016 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 14 503 5.0E-234 T 14-09-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 PANTHER PTHR22594 1 503 1.9E-284 T 14-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 SUPERFAMILY SSF55681 162 502 6.05E-124 T 14-09-2016 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 Pfam PF01336 OB-fold nucleic acid binding domain 68 146 2.9E-15 T 14-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 2.6E-38 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 2.6E-38 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 2.6E-38 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 2.6E-38 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 2.6E-38 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 Gene3D G3DSA:3.30.930.10 157 500 2.6E-123 T 14-09-2016 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 506 45.351 T 14-09-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 PIRSF PIRSF039101 1 506 9.8E-204 T 14-09-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 PAJ_RS13250 53c105f8b4354afd68b3e0ff0650d2c7 506 Pfam PF00152 tRNA synthetases class II (D, K and N) 162 501 2.5E-82 T 14-09-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS16560 67443bf9516344d7879941522e5aa7f4 509 PANTHER PTHR11101:SF59 11 509 0.0 T 14-09-2016 PAJ_RS16560 67443bf9516344d7879941522e5aa7f4 509 PANTHER PTHR11101 11 509 0.0 T 14-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 PAJ_RS16560 67443bf9516344d7879941522e5aa7f4 509 Pfam PF01384 Phosphate transporter family 39 498 1.9E-85 T 14-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 PAJ_RS14005 4d4b4801c480a6feffa39c6970c98ba0 44 Pfam PF00817 impB/mucB/samB family 5 43 1.1E-7 T 14-09-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS14005 4d4b4801c480a6feffa39c6970c98ba0 44 PANTHER PTHR11076 1 43 1.9E-22 T 14-09-2016 PAJ_RS14005 4d4b4801c480a6feffa39c6970c98ba0 44 SUPERFAMILY SSF56672 1 43 4.09E-12 T 14-09-2016 PAJ_RS14005 4d4b4801c480a6feffa39c6970c98ba0 44 PANTHER PTHR11076:SF40 1 43 1.9E-22 T 14-09-2016 PAJ_RS03130 bb104b13eea1a967cc64c93331e8b238 393 Gene3D G3DSA:1.10.3720.10 145 373 3.2E-25 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03130 bb104b13eea1a967cc64c93331e8b238 393 SUPERFAMILY SSF161098 181 379 1.83E-30 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03130 bb104b13eea1a967cc64c93331e8b238 393 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 203 389 9.1E-19 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03130 bb104b13eea1a967cc64c93331e8b238 393 PANTHER PTHR30177:SF8 96 386 4.2E-135 T 14-09-2016 PAJ_RS03130 bb104b13eea1a967cc64c93331e8b238 393 PANTHER PTHR30177 96 386 4.2E-135 T 14-09-2016 PAJ_RS05040 3550183ceb7a8d3ade21e37a668432c9 155 Pfam PF13673 Acetyltransferase (GNAT) domain 42 138 6.8E-11 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS05040 3550183ceb7a8d3ade21e37a668432c9 155 SUPERFAMILY SSF55729 11 135 1.21E-14 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05040 3550183ceb7a8d3ade21e37a668432c9 155 Gene3D G3DSA:3.40.630.30 16 137 2.0E-13 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS08905 4144ad5f20b97c5938054f567f1f757d 161 Pfam PF03748 Flagellar basal body-associated protein FliL 59 159 1.1E-22 T 14-09-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 PAJ_RS08905 4144ad5f20b97c5938054f567f1f757d 161 PANTHER PTHR35091 1 161 2.2E-51 T 14-09-2016 PAJ_RS08905 4144ad5f20b97c5938054f567f1f757d 161 PANTHER PTHR35091:SF1 1 161 2.2E-51 T 14-09-2016 PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 5.8E-80 T 14-09-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 SUPERFAMILY SSF52440 2 122 4.32E-46 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 Gene3D G3DSA:3.40.50.20 2 129 5.0E-56 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 Hamap MF_00162 Glutathione synthetase [gshB]. 1 314 181.971 T 14-09-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 PANTHER PTHR21621 1 313 1.6E-166 T 14-09-2016 PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 PANTHER PTHR21621:SF4 1 313 1.6E-166 T 14-09-2016 PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 7.0E-47 T 14-09-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 312 7.8E-142 T 14-09-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 Gene3D G3DSA:3.30.1490.20 137 191 1.1E-31 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 Gene3D G3DSA:3.30.470.20 192 298 1.4E-49 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS13460 a3c2e44e7cc799e3d5081f9efcedbca3 314 SUPERFAMILY SSF56059 123 312 1.01E-60 T 14-09-2016 PAJ_RS08335 93541be98f8b92e3caa298ef012d9517 287 PANTHER PTHR30514 1 269 2.1E-145 T 14-09-2016 PAJ_RS08335 93541be98f8b92e3caa298ef012d9517 287 Pfam PF01380 SIS domain 123 250 1.0E-19 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS08335 93541be98f8b92e3caa298ef012d9517 287 PANTHER PTHR30514:SF7 1 269 2.1E-145 T 14-09-2016 PAJ_RS08335 93541be98f8b92e3caa298ef012d9517 287 Gene3D G3DSA:1.10.10.10 1 74 3.0E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08335 93541be98f8b92e3caa298ef012d9517 287 SUPERFAMILY SSF53697 90 278 1.26E-38 T 14-09-2016 PAJ_RS08335 93541be98f8b92e3caa298ef012d9517 287 SUPERFAMILY SSF46689 2 75 3.58E-20 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS08335 93541be98f8b92e3caa298ef012d9517 287 Gene3D G3DSA:3.40.50.10490 94 268 2.8E-35 T 14-09-2016 PAJ_RS08335 93541be98f8b92e3caa298ef012d9517 287 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 73 8.1E-26 T 14-09-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PAJ_RS03090 df3fa23a55fa99ab01aed5e5c92009c9 315 PANTHER PTHR21581 20 310 4.3E-161 T 14-09-2016 PAJ_RS03090 df3fa23a55fa99ab01aed5e5c92009c9 315 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 70 81 5.7E-14 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS03090 df3fa23a55fa99ab01aed5e5c92009c9 315 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 147 160 5.7E-14 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS03090 df3fa23a55fa99ab01aed5e5c92009c9 315 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 120 137 5.7E-14 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS03090 df3fa23a55fa99ab01aed5e5c92009c9 315 PANTHER PTHR21581:SF8 20 310 4.3E-161 T 14-09-2016 PAJ_RS03090 df3fa23a55fa99ab01aed5e5c92009c9 315 SUPERFAMILY SSF56601 5 281 1.2E-60 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS03090 df3fa23a55fa99ab01aed5e5c92009c9 315 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 38 265 3.7E-77 T 14-09-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 PAJ_RS03090 df3fa23a55fa99ab01aed5e5c92009c9 315 Gene3D G3DSA:3.40.710.10 39 281 3.8E-65 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS09860 e7515fe3ba11c79dd9887d86ef5ee427 124 SUPERFAMILY SSF56784 1 108 8.25E-17 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS09860 e7515fe3ba11c79dd9887d86ef5ee427 124 Gene3D G3DSA:3.40.50.1000 1 122 3.4E-33 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS09860 e7515fe3ba11c79dd9887d86ef5ee427 124 TIGRFAM TIGR01689 EcbF-BcbF: capsule biosynthesis phosphatase 1 124 6.6E-52 T 14-09-2016 IPR010039 Capsule biosynthesis phosphatase PAJ_RS12950 8404f363b73c764bc61d42863a992fde 199 Gene3D G3DSA:3.90.80.10 32 197 1.2E-50 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS12950 8404f363b73c764bc61d42863a992fde 199 SUPERFAMILY SSF50324 30 196 1.96E-53 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS12950 8404f363b73c764bc61d42863a992fde 199 Pfam PF00719 Inorganic pyrophosphatase 40 196 2.8E-45 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS12950 8404f363b73c764bc61d42863a992fde 199 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 36 196 30.031 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS12950 8404f363b73c764bc61d42863a992fde 199 PANTHER PTHR10286 34 197 2.7E-51 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS12950 8404f363b73c764bc61d42863a992fde 199 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 87 93 - T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 PANTHER PTHR30146 1 334 2.1E-212 T 14-09-2016 PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 328 3.1E-145 T 14-09-2016 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 Gene3D G3DSA:3.40.50.2300 63 152 2.9E-28 T 14-09-2016 PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 Gene3D G3DSA:3.40.50.2300 156 329 5.7E-35 T 14-09-2016 PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 Gene3D G3DSA:1.10.260.40 1 62 1.1E-24 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 50 6.6E-19 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 PANTHER PTHR30146:SF25 1 334 2.1E-212 T 14-09-2016 PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 SUPERFAMILY SSF47413 2 58 9.0E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 SUPERFAMILY SSF53822 60 314 3.73E-41 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 SMART SM00354 1 73 1.4E-31 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 273 1.4E-13 T 14-09-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain PAJ_RS00275 33efa3c2475d1402fce4e648fb8e3835 336 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 Gene3D G3DSA:1.10.357.10 1 194 5.4E-48 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 197 102.002 T 14-09-2016 IPR017757 Transcriptional repressor BetI UniPathway: UPA00529 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 SUPERFAMILY SSF48498 84 193 2.33E-19 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 PANTHER PTHR30055 1 193 4.2E-103 T 14-09-2016 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 1.2E-12 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 SUPERFAMILY SSF46689 5 80 4.77E-17 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.0E-5 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.0E-5 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 Pfam PF13977 Bacterial transcriptional repressor 86 192 2.8E-31 T 14-09-2016 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 PANTHER PTHR30055:SF61 1 193 4.2E-103 T 14-09-2016 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 2 192 4.8E-77 T 14-09-2016 IPR017757 Transcriptional repressor BetI UniPathway: UPA00529 PAJ_RS08205 82237a9b5208cee5256f5857cde79c66 197 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 14-09-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PAJ_RS20195 3a345fa218f2dd8df5d4813e7073d27f 522 Gene3D G3DSA:3.40.190.10 139 291 4.6E-25 T 14-09-2016 PAJ_RS20195 3a345fa218f2dd8df5d4813e7073d27f 522 Gene3D G3DSA:3.10.105.10 292 492 3.0E-40 T 14-09-2016 PAJ_RS20195 3a345fa218f2dd8df5d4813e7073d27f 522 PIRSF PIRSF002741 5 520 5.2E-51 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS20195 3a345fa218f2dd8df5d4813e7073d27f 522 SUPERFAMILY SSF53850 20 507 2.64E-88 T 14-09-2016 PAJ_RS20195 3a345fa218f2dd8df5d4813e7073d27f 522 PANTHER PTHR30290 5 503 4.1E-78 T 14-09-2016 PAJ_RS20195 3a345fa218f2dd8df5d4813e7073d27f 522 Gene3D G3DSA:3.90.76.10 58 125 1.5E-9 T 14-09-2016 PAJ_RS20195 3a345fa218f2dd8df5d4813e7073d27f 522 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 438 3.2E-62 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS06760 230fb1df33409ca328f401466bebaa85 142 SUPERFAMILY SSF52833 3 135 1.42E-38 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS06760 230fb1df33409ca328f401466bebaa85 142 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 2.4E-40 T 14-09-2016 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 PAJ_RS06760 230fb1df33409ca328f401466bebaa85 142 Gene3D G3DSA:3.40.30.10 1 139 8.2E-60 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS06760 230fb1df33409ca328f401466bebaa85 142 Pfam PF03960 ArsC family 7 113 2.1E-18 T 14-09-2016 IPR006660 Arsenate reductase-like PAJ_RS06760 230fb1df33409ca328f401466bebaa85 142 PANTHER PTHR30041 1 136 6.6E-53 T 14-09-2016 PAJ_RS06760 230fb1df33409ca328f401466bebaa85 142 PANTHER PTHR30041:SF0 1 136 6.6E-53 T 14-09-2016 PAJ_RS07825 1bca5af73dde02b80c6302774ea11fbe 135 SUPERFAMILY SSF81273 2 58 6.67E-18 T 14-09-2016 PAJ_RS07825 1bca5af73dde02b80c6302774ea11fbe 135 SMART SM00528 87 135 9.0E-24 T 14-09-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 PAJ_RS07825 1bca5af73dde02b80c6302774ea11fbe 135 Pfam PF00816 H-NS histone family 33 127 1.5E-19 T 14-09-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 PAJ_RS07825 1bca5af73dde02b80c6302774ea11fbe 135 Gene3D G3DSA:4.10.430.10 92 135 1.5E-24 T 14-09-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 PAJ_RS07825 1bca5af73dde02b80c6302774ea11fbe 135 PANTHER PTHR38097 2 135 2.0E-89 T 14-09-2016 PAJ_RS07825 1bca5af73dde02b80c6302774ea11fbe 135 Gene3D G3DSA:1.10.287.1050 1 58 2.5E-30 T 14-09-2016 IPR027454 Histone-like protein H-NS family, oligomerisation domain GO:0046983 PAJ_RS07825 1bca5af73dde02b80c6302774ea11fbe 135 PANTHER PTHR38097:SF1 2 135 2.0E-89 T 14-09-2016 PAJ_RS07825 1bca5af73dde02b80c6302774ea11fbe 135 PIRSF PIRSF002096 1 135 6.7E-55 T 14-09-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 PAJ_RS07825 1bca5af73dde02b80c6302774ea11fbe 135 SUPERFAMILY SSF81273 93 135 4.71E-11 T 14-09-2016 PAJ_RS01315 183be452fd97caa88c77a71e0dcf6a31 320 PANTHER PTHR22617:SF37 1 177 1.8E-62 T 14-09-2016 PAJ_RS01315 183be452fd97caa88c77a71e0dcf6a31 320 SMART SM00260 17 161 1.6E-12 T 14-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PAJ_RS01315 183be452fd97caa88c77a71e0dcf6a31 320 Gene3D G3DSA:3.40.50.2300 190 317 2.9E-28 T 14-09-2016 PAJ_RS01315 183be452fd97caa88c77a71e0dcf6a31 320 SUPERFAMILY SSF52172 190 317 9.39E-24 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS01315 183be452fd97caa88c77a71e0dcf6a31 320 SUPERFAMILY SSF50341 19 165 1.44E-23 T 14-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PAJ_RS01315 183be452fd97caa88c77a71e0dcf6a31 320 PIRSF PIRSF002867 1 320 8.2E-100 T 14-09-2016 IPR024181 Chemotaxis response regulator CheV PAJ_RS01315 183be452fd97caa88c77a71e0dcf6a31 320 Pfam PF01584 CheW-like domain 21 163 8.7E-29 T 14-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PAJ_RS01315 183be452fd97caa88c77a71e0dcf6a31 320 PANTHER PTHR22617 1 177 1.8E-62 T 14-09-2016 PAJ_RS01315 183be452fd97caa88c77a71e0dcf6a31 320 SMART SM00448 187 312 4.7E-16 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS01315 183be452fd97caa88c77a71e0dcf6a31 320 Pfam PF00072 Response regulator receiver domain 190 309 5.0E-16 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 462 468 - T 14-09-2016 IPR018303 P-type ATPase, phosphorylation site PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 PANTHER PTHR24093 60 731 7.2E-209 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 232 732 2.5E-74 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 209 756 4.8E-174 T 14-09-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 SUPERFAMILY SSF81653 262 359 8.63E-20 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 Gene3D G3DSA:3.40.50.1000 433 473 4.4E-46 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 Gene3D G3DSA:3.40.50.1000 584 722 4.4E-46 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 PANTHER PTHR24093:SF126 60 731 7.2E-209 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 SUPERFAMILY SSF55008 76 138 4.32E-13 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 SUPERFAMILY SSF56784 517 754 5.82E-51 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 SUPERFAMILY SSF56784 458 478 5.82E-51 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 Gene3D G3DSA:3.40.1110.10 474 583 3.2E-16 T 14-09-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 ProSitePatterns PS01047 Heavy-metal-associated domain. 81 111 - T 14-09-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 603 613 6.0E-28 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 677 689 6.0E-28 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 460 474 6.0E-28 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 654 673 6.0E-28 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 309 323 6.0E-28 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 581 592 6.0E-28 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 Pfam PF00403 Heavy-metal-associated domain 81 136 2.4E-7 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 SUPERFAMILY SSF81665 360 454 2.75E-11 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 SUPERFAMILY SSF81665 212 263 2.75E-11 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 SUPERFAMILY SSF81665 703 729 2.75E-11 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 Pfam PF00702 haloacid dehalogenase-like hydrolase 456 667 4.5E-37 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 ProSitePatterns PS01229 Hypothetical cof family signature 2. 654 676 - T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 Gene3D G3DSA:3.30.70.100 76 140 1.4E-16 T 14-09-2016 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 Pfam PF00122 E1-E2 ATPase 230 451 2.6E-56 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PAJ_RS16395 cc73a2a3483b543420f272ae59bce869 761 Gene3D G3DSA:2.70.150.10 212 360 3.8E-20 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PAJ_RS19425 70f9245bf9f4e75b7d6769b8c8fa17e1 218 PANTHER PTHR35039 1 216 1.9E-91 T 14-09-2016 PAJ_RS19425 70f9245bf9f4e75b7d6769b8c8fa17e1 218 Gene3D G3DSA:3.20.20.70 2 215 2.5E-72 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS19425 70f9245bf9f4e75b7d6769b8c8fa17e1 218 SUPERFAMILY SSF51366 4 213 9.13E-34 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PAJ_RS19425 70f9245bf9f4e75b7d6769b8c8fa17e1 218 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 195 4.5E-24 T 14-09-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS19425 70f9245bf9f4e75b7d6769b8c8fa17e1 218 PANTHER PTHR35039:SF2 1 216 1.9E-91 T 14-09-2016 PAJ_RS19425 70f9245bf9f4e75b7d6769b8c8fa17e1 218 SMART SM00934 5 207 9.4E-24 T 14-09-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 PANTHER PTHR22648:SF0 1 448 6.7E-188 T 14-09-2016 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Pfam PF00575 S1 RNA binding domain 133 195 1.2E-4 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 SMART SM00316 133 200 8.8E-9 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 410 29.102 T 14-09-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Gene3D G3DSA:2.40.50.140 128 197 2.0E-24 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Gene3D G3DSA:3.30.300.20 278 346 4.3E-26 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 PANTHER PTHR22648 1 448 6.7E-188 T 14-09-2016 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Pfam PF13184 NusA-like KH domain 230 297 1.1E-27 T 14-09-2016 IPR025249 KH domain, NusA-like GO:0003723 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 342 1.1E-129 T 14-09-2016 IPR010213 Transcription termination factor NusA GO:0003723 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 SUPERFAMILY SSF54814 201 278 7.85E-29 T 14-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 SUPERFAMILY SSF47794 429 492 2.2E-17 T 14-09-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 440 489 1.1E-18 T 14-09-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 365 414 1.1E-21 T 14-09-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 SMART SM00322 230 293 17.0 T 14-09-2016 IPR004087 K Homology domain GO:0003676 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 SMART SM00322 301 364 0.081 T 14-09-2016 IPR004087 K Homology domain GO:0003676 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Gene3D G3DSA:1.10.150.20 357 414 6.2E-23 T 14-09-2016 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 SUPERFAMILY SSF50249 132 199 4.25E-17 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Gene3D G3DSA:1.10.150.20 429 493 4.4E-24 T 14-09-2016 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Gene3D G3DSA:3.30.1480.10 1 124 6.1E-46 T 14-09-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 SUPERFAMILY SSF47794 355 415 4.24E-17 T 14-09-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Gene3D G3DSA:3.30.300.20 199 277 5.5E-34 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Pfam PF14520 Helix-hairpin-helix domain 432 486 7.3E-11 T 14-09-2016 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 Pfam PF08529 NusA N-terminal domain 4 123 1.7E-36 T 14-09-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 SUPERFAMILY SSF54814 279 343 2.27E-15 T 14-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 PAJ_RS19900 ed88137b5e1ddfe462d59255e30997d8 495 SUPERFAMILY SSF69705 1 126 2.09E-40 T 14-09-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 PAJ_RS14395 8a90ed1c06bd3f054a7c4c1ad013bea7 246 PANTHER PTHR33711:SF1 7 243 5.7E-118 T 14-09-2016 PAJ_RS14395 8a90ed1c06bd3f054a7c4c1ad013bea7 246 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 82 110 - T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PAJ_RS14395 8a90ed1c06bd3f054a7c4c1ad013bea7 246 PANTHER PTHR33711 7 243 5.7E-118 T 14-09-2016 PAJ_RS14395 8a90ed1c06bd3f054a7c4c1ad013bea7 246 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 18 239 3.6E-108 T 14-09-2016 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 PAJ_RS14395 8a90ed1c06bd3f054a7c4c1ad013bea7 246 SUPERFAMILY SSF49482 10 240 5.49E-76 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PAJ_RS14395 8a90ed1c06bd3f054a7c4c1ad013bea7 246 Pfam PF00775 Dioxygenase 48 231 8.2E-56 T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PAJ_RS14395 8a90ed1c06bd3f054a7c4c1ad013bea7 246 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 12 44 6.8E-13 T 14-09-2016 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 PAJ_RS14395 8a90ed1c06bd3f054a7c4c1ad013bea7 246 Gene3D G3DSA:2.60.130.10 11 239 9.3E-77 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PAJ_RS02185 bdeef6964f188167b44dff7fa1b9f736 542 PIRSF PIRSF002741 5 542 4.4E-109 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS02185 bdeef6964f188167b44dff7fa1b9f736 542 SUPERFAMILY SSF53850 41 540 9.29E-138 T 14-09-2016 PAJ_RS02185 bdeef6964f188167b44dff7fa1b9f736 542 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 464 1.2E-88 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS02185 bdeef6964f188167b44dff7fa1b9f736 542 Gene3D G3DSA:3.10.105.10 299 511 3.7E-58 T 14-09-2016 PAJ_RS02185 bdeef6964f188167b44dff7fa1b9f736 542 Gene3D G3DSA:3.90.76.10 50 224 8.9E-52 T 14-09-2016 PAJ_RS02185 bdeef6964f188167b44dff7fa1b9f736 542 PANTHER PTHR30290 1 542 1.3E-163 T 14-09-2016 PAJ_RS02185 bdeef6964f188167b44dff7fa1b9f736 542 PANTHER PTHR30290:SF10 1 542 1.3E-163 T 14-09-2016 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.7E-14 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 Gene3D G3DSA:1.10.10.60 27 98 1.7E-28 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 PANTHER PTHR32071 5 98 4.2E-34 T 14-09-2016 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 PIRSF PIRSF002097 1 98 4.0E-46 T 14-09-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 1.7E-34 T 14-09-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 1.7E-34 T 14-09-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 1.7E-34 T 14-09-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 1.7E-34 T 14-09-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 33.655 T 14-09-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-13 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-13 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS15605 5bbf7c517085efd4aae176630c5bb402 98 SUPERFAMILY SSF46689 4 98 6.87E-27 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS03145 2a05a3ad5b664b1c084f02b0d0c879e6 244 Pfam PF13411 MerR HTH family regulatory protein 4 71 2.8E-18 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS03145 2a05a3ad5b664b1c084f02b0d0c879e6 244 PANTHER PTHR30204:SF19 1 238 1.1E-69 T 14-09-2016 PAJ_RS03145 2a05a3ad5b664b1c084f02b0d0c879e6 244 SUPERFAMILY SSF46955 4 91 1.33E-20 T 14-09-2016 IPR009061 Putative DNA-binding domain PAJ_RS03145 2a05a3ad5b664b1c084f02b0d0c879e6 244 Gene3D G3DSA:1.10.1660.10 4 96 6.6E-22 T 14-09-2016 PAJ_RS03145 2a05a3ad5b664b1c084f02b0d0c879e6 244 PANTHER PTHR30204 1 238 1.1E-69 T 14-09-2016 PAJ_RS03145 2a05a3ad5b664b1c084f02b0d0c879e6 244 ProSitePatterns PS00552 MerR-type HTH domain signature. 7 30 - T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS03145 2a05a3ad5b664b1c084f02b0d0c879e6 244 SMART SM00422 4 73 2.3E-27 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 3 576 6.3E-203 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 576 28.281 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 1.5E-25 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 1.5E-25 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 303 324 1.5E-25 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 1.5E-25 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 SUPERFAMILY SSF52374 110 453 1.69E-96 T 14-09-2016 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 SUPERFAMILY SSF47323 454 576 1.83E-34 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 PANTHER PTHR11956:SF1 1 576 4.7E-261 T 14-09-2016 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 SUPERFAMILY SSF55190 2 96 5.62E-21 T 14-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 Gene3D G3DSA:3.30.1360.70 2 105 6.5E-33 T 14-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 3 87 2.0E-21 T 14-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 Pfam PF00750 tRNA synthetases class I (R) 98 446 1.5E-165 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 Gene3D G3DSA:3.40.50.620 111 453 2.4E-116 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 SMART SM01016 1 87 2.5E-29 T 14-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 Gene3D G3DSA:1.10.730.10 454 576 2.2E-34 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 SMART SM00836 460 576 1.3E-35 T 14-09-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 Pfam PF05746 DALR anticodon binding domain 460 576 1.3E-33 T 14-09-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 PAJ_RS08455 c4a5308994bad93ca9ea09cafb0766a5 576 PANTHER PTHR11956 1 576 4.7E-261 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 SUPERFAMILY SSF55103 257 543 1.96E-53 T 14-09-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 Gene3D G3DSA:1.10.1060.10 516 619 7.3E-15 T 14-09-2016 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 Gene3D G3DSA:1.10.1060.10 656 705 7.3E-15 T 14-09-2016 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 PANTHER PTHR11748:SF35 18 198 3.5E-182 T 14-09-2016 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 SUPERFAMILY SSF56176 19 282 9.81E-52 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 673 684 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 Pfam PF13183 4Fe-4S dicluster domain 576 687 2.1E-12 T 14-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 PANTHER PTHR11748 249 587 3.5E-182 T 14-09-2016 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 PANTHER PTHR11748 18 198 3.5E-182 T 14-09-2016 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 Pfam PF02913 FAD linked oxidases, C-terminal domain 281 539 2.5E-63 T 14-09-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 SUPERFAMILY SSF46548 517 622 3.31E-8 T 14-09-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 SUPERFAMILY SSF46548 655 690 3.31E-8 T 14-09-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 Gene3D G3DSA:3.30.43.10 2 109 4.0E-28 T 14-09-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 PANTHER PTHR11748:SF35 249 587 3.5E-182 T 14-09-2016 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 Gene3D G3DSA:3.30.465.10 110 282 2.1E-41 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS05850 9f15ab421d60bb1d9d6fea9d31bc6e8c 1017 Pfam PF01565 FAD binding domain 52 192 5.3E-36 T 14-09-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 PAJ_RS13340 32b296f007631b2527222823e4ea13ea 192 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 6 190 36.113 T 14-09-2016 IPR011978 Uncharacterised protein family UPF0149 PAJ_RS13340 32b296f007631b2527222823e4ea13ea 192 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 13 166 1.6E-12 T 14-09-2016 IPR011978 Uncharacterised protein family UPF0149 PAJ_RS13340 32b296f007631b2527222823e4ea13ea 192 Pfam PF03695 Uncharacterised protein family (UPF0149) 12 177 2.5E-39 T 14-09-2016 IPR011978 Uncharacterised protein family UPF0149 PAJ_RS13340 32b296f007631b2527222823e4ea13ea 192 PANTHER PTHR37528 2 192 1.1E-60 T 14-09-2016 PAJ_RS13340 32b296f007631b2527222823e4ea13ea 192 SUPERFAMILY SSF101327 8 176 3.01E-52 T 14-09-2016 IPR011978 Uncharacterised protein family UPF0149 PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 SUPERFAMILY SSF53822 259 286 2.78E-71 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 SUPERFAMILY SSF53822 352 482 2.78E-71 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 SUPERFAMILY SSF53822 522 675 2.78E-71 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 Gene3D G3DSA:3.40.50.2300 256 286 7.8E-72 T 14-09-2016 PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 Gene3D G3DSA:3.40.50.2300 602 664 7.8E-72 T 14-09-2016 PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 Gene3D G3DSA:3.40.50.2300 352 422 7.8E-72 T 14-09-2016 PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 Gene3D G3DSA:3.40.50.2300 423 483 2.2E-54 T 14-09-2016 PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 Gene3D G3DSA:3.40.50.2300 524 601 2.2E-54 T 14-09-2016 PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 PANTHER PTHR38038:SF1 314 677 6.1E-184 T 14-09-2016 PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 PANTHER PTHR38038:SF1 2 287 6.1E-184 T 14-09-2016 PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 6 671 36.969 T 14-09-2016 IPR007443 Penicillin-binding protein activator LpoA PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 Pfam PF04348 LppC putative lipoprotein 45 290 3.4E-44 T 14-09-2016 IPR007443 Penicillin-binding protein activator LpoA PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 Pfam PF04348 LppC putative lipoprotein 328 671 2.5E-92 T 14-09-2016 IPR007443 Penicillin-binding protein activator LpoA PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 PANTHER PTHR38038 314 677 6.1E-184 T 14-09-2016 PAJ_RS15080 30b693b2b07cc53eac4993c736303e60 677 PANTHER PTHR38038 2 287 6.1E-184 T 14-09-2016 PAJ_RS19280 55764ba40ecaa4672f59bd4412f9d26e 305 Pfam PF00294 pfkB family carbohydrate kinase 4 298 2.6E-66 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS19280 55764ba40ecaa4672f59bd4412f9d26e 305 Gene3D G3DSA:3.40.1190.20 2 304 3.3E-86 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS19280 55764ba40ecaa4672f59bd4412f9d26e 305 PANTHER PTHR10584:SF161 1 304 7.9E-100 T 14-09-2016 PAJ_RS19280 55764ba40ecaa4672f59bd4412f9d26e 305 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 245 258 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS19280 55764ba40ecaa4672f59bd4412f9d26e 305 PANTHER PTHR10584 1 304 7.9E-100 T 14-09-2016 PAJ_RS19280 55764ba40ecaa4672f59bd4412f9d26e 305 SUPERFAMILY SSF53613 2 304 3.43E-79 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS06255 0d2e243e2211c0af35d40594b6345a08 328 PANTHER PTHR32196:SF23 1 328 1.4E-199 T 14-09-2016 PAJ_RS06255 0d2e243e2211c0af35d40594b6345a08 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 304 1.7E-41 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS06255 0d2e243e2211c0af35d40594b6345a08 328 PANTHER PTHR32196 1 328 1.4E-199 T 14-09-2016 PAJ_RS17040 c5d34b599c8c66b19bb02672c4da5185 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.8E-22 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17040 c5d34b599c8c66b19bb02672c4da5185 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 2.8E-22 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17040 c5d34b599c8c66b19bb02672c4da5185 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 2.8E-22 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17040 c5d34b599c8c66b19bb02672c4da5185 71 SUPERFAMILY SSF143800 1 66 1.22E-27 T 14-09-2016 PAJ_RS17040 c5d34b599c8c66b19bb02672c4da5185 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 1.7E-33 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17040 c5d34b599c8c66b19bb02672c4da5185 71 PANTHER PTHR33280 1 66 1.6E-36 T 14-09-2016 PAJ_RS17040 c5d34b599c8c66b19bb02672c4da5185 71 Pfam PF01197 Ribosomal protein L31 1 64 7.8E-31 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17040 c5d34b599c8c66b19bb02672c4da5185 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17040 c5d34b599c8c66b19bb02672c4da5185 71 PANTHER PTHR33280:SF2 1 66 1.6E-36 T 14-09-2016 PAJ_RS17040 c5d34b599c8c66b19bb02672c4da5185 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 29.927 T 14-09-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12785 31639195732bfac301c6d789e06a98dc 258 Gene3D G3DSA:1.10.150.290 182 237 3.2E-29 T 14-09-2016 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 PAJ_RS12785 31639195732bfac301c6d789e06a98dc 258 PANTHER PTHR10108:SF890 3 235 5.0E-80 T 14-09-2016 PAJ_RS12785 31639195732bfac301c6d789e06a98dc 258 PANTHER PTHR10108 3 235 5.0E-80 T 14-09-2016 PAJ_RS12785 31639195732bfac301c6d789e06a98dc 258 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 2 257 43.001 T 14-09-2016 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 PAJ_RS12785 31639195732bfac301c6d789e06a98dc 258 Pfam PF13649 Methyltransferase domain 35 124 4.2E-13 T 14-09-2016 PAJ_RS12785 31639195732bfac301c6d789e06a98dc 258 SUPERFAMILY SSF53335 8 210 3.19E-30 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS12785 31639195732bfac301c6d789e06a98dc 258 Gene3D G3DSA:3.40.50.150 3 181 4.5E-31 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS02860 4a670ffe9fbaf536b3432523decab011 318 PANTHER PTHR11562:SF17 1 295 2.6E-114 T 14-09-2016 PAJ_RS02860 4a670ffe9fbaf536b3432523decab011 318 Pfam PF01545 Cation efflux family 17 209 9.0E-52 T 14-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PAJ_RS02860 4a670ffe9fbaf536b3432523decab011 318 SUPERFAMILY SSF161111 11 210 3.4E-61 T 14-09-2016 PAJ_RS02860 4a670ffe9fbaf536b3432523decab011 318 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 13 288 6.7E-96 T 14-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PAJ_RS02860 4a670ffe9fbaf536b3432523decab011 318 SUPERFAMILY SSF160240 213 287 3.14E-7 T 14-09-2016 PAJ_RS02860 4a670ffe9fbaf536b3432523decab011 318 PANTHER PTHR11562 1 295 2.6E-114 T 14-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PAJ_RS02860 4a670ffe9fbaf536b3432523decab011 318 Gene3D G3DSA:1.20.1510.10 13 209 2.1E-66 T 14-09-2016 IPR027469 Cation efflux protein transmembrane domain PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 SUPERFAMILY SSF52540 4 243 2.24E-83 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 Gene3D G3DSA:2.40.50.140 283 341 7.5E-19 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 PANTHER PTHR24220 5 292 5.8E-162 T 14-09-2016 PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 SMART SM00382 29 213 6.8E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 Gene3D G3DSA:3.40.50.300 4 235 7.8E-74 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 SUPERFAMILY SSF50331 237 356 7.78E-26 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 Pfam PF08402 TOBE domain 278 348 9.2E-11 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 PANTHER PTHR24220:SF151 5 292 5.8E-162 T 14-09-2016 PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 Pfam PF00005 ABC transporter 21 162 5.1E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 Gene3D G3DSA:2.40.50.100 240 282 5.4E-8 T 14-09-2016 PAJ_RS16300 f2c086986b072ab797987e130df700a4 357 Gene3D G3DSA:2.40.50.100 342 356 5.4E-8 T 14-09-2016 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 PANTHER PTHR21403:SF0 3 299 3.5E-132 T 14-09-2016 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 14-09-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 PANTHER PTHR21403 3 299 3.5E-132 T 14-09-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 6 299 35.798 T 14-09-2016 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 197 2.2E-56 T 14-09-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 204 297 4.7E-30 T 14-09-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 Pfam PF08029 HisG, C-terminal domain 223 296 4.4E-23 T 14-09-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 SUPERFAMILY SSF53850 6 224 1.28E-70 T 14-09-2016 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 Gene3D G3DSA:3.40.190.10 3 139 7.1E-53 T 14-09-2016 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 Gene3D G3DSA:3.30.70.120 226 298 2.3E-29 T 14-09-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 Pfam PF01634 ATP phosphoribosyltransferase 54 219 2.1E-48 T 14-09-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PAJ_RS09785 c44a4b7bd4a0ddd8f883295bb0b46b52 299 SUPERFAMILY SSF54913 226 298 2.22E-20 T 14-09-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 SUPERFAMILY SSF54680 341 439 1.2E-30 T 14-09-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 351 423 9.7E-24 T 14-09-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 Hamap MF_01628 Thymidine phosphorylase [deoA]. 1 439 53.055 T 14-09-2016 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|UniPathway: UPA00578 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 Gene3D G3DSA:1.20.970.10 3 68 8.0E-29 T 14-09-2016 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 Gene3D G3DSA:3.40.1030.10 75 337 4.9E-112 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 PANTHER PTHR10515 4 442 2.9E-220 T 14-09-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 Gene3D G3DSA:3.90.1170.30 339 433 7.4E-35 T 14-09-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 SMART SM00941 350 424 6.5E-29 T 14-09-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 3 438 4.8E-227 T 14-09-2016 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|UniPathway: UPA00578 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 14-09-2016 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 Pfam PF00591 Glycosyl transferase family, a/b domain 79 309 2.4E-51 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 5.1E-167 T 14-09-2016 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|UniPathway: UPA00578 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 PANTHER PTHR10515:SF0 4 442 2.9E-220 T 14-09-2016 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 SUPERFAMILY SSF47648 4 70 7.2E-21 T 14-09-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 5.6E-18 T 14-09-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 PIRSF PIRSF000478 2 439 7.0E-155 T 14-09-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 PAJ_RS14170 b340b8254570ea2fe73f06fd37b22690 442 SUPERFAMILY SSF52418 75 334 2.49E-89 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PAJ_RS17810 8630ed19b54f52d52a4007dacf6f32de 268 Pfam PF13531 Bacterial extracellular solute-binding protein 26 251 9.7E-37 T 14-09-2016 PAJ_RS17810 8630ed19b54f52d52a4007dacf6f32de 268 PANTHER PTHR30632:SF5 3 252 2.3E-59 T 14-09-2016 PAJ_RS17810 8630ed19b54f52d52a4007dacf6f32de 268 SUPERFAMILY SSF53850 25 251 2.53E-41 T 14-09-2016 PAJ_RS17810 8630ed19b54f52d52a4007dacf6f32de 268 Gene3D G3DSA:3.40.190.10 5 122 5.2E-13 T 14-09-2016 PAJ_RS17810 8630ed19b54f52d52a4007dacf6f32de 268 Gene3D G3DSA:3.40.190.10 216 256 5.2E-13 T 14-09-2016 PAJ_RS17810 8630ed19b54f52d52a4007dacf6f32de 268 PANTHER PTHR30632 3 252 2.3E-59 T 14-09-2016 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 24 1.4E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 1.4E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 1.4E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 1.4E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 1.4E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 512 3.3E-56 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 Gene3D G3DSA:1.10.287.950 280 485 4.8E-53 T 14-09-2016 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 PANTHER PTHR32089:SF63 154 514 1.9E-102 T 14-09-2016 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 PANTHER PTHR32089 154 514 1.9E-102 T 14-09-2016 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 SUPERFAMILY SSF58104 242 514 2.88E-62 T 14-09-2016 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 182 1.4E-9 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 SMART SM00283 266 513 4.3E-73 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS09560 ac23498cf9b957383ccbcec5bf49efac 514 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 291 313 - T 14-09-2016 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site PAJ_RS17685 a6c3e0a9882d081e472a8545ebd9ba1f 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 308 4.5E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS17685 a6c3e0a9882d081e472a8545ebd9ba1f 320 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 17 311 6.1E-95 T 14-09-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 PAJ_RS17685 a6c3e0a9882d081e472a8545ebd9ba1f 320 PANTHER PTHR30425:SF1 13 319 1.0E-157 T 14-09-2016 PAJ_RS17685 a6c3e0a9882d081e472a8545ebd9ba1f 320 PANTHER PTHR30425 13 319 1.0E-157 T 14-09-2016 PAJ_RS17685 a6c3e0a9882d081e472a8545ebd9ba1f 320 Gene3D G3DSA:1.10.3720.10 27 315 1.6E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS17685 a6c3e0a9882d081e472a8545ebd9ba1f 320 SUPERFAMILY SSF161098 29 304 1.21E-34 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11535 072a0fdc11b33b207ec0b009121a4f56 226 PANTHER PTHR10655 6 200 1.2E-18 T 14-09-2016 PAJ_RS11535 072a0fdc11b33b207ec0b009121a4f56 226 PANTHER PTHR10655:SF17 6 200 1.2E-18 T 14-09-2016 PAJ_RS11535 072a0fdc11b33b207ec0b009121a4f56 226 SUPERFAMILY SSF53474 2 199 1.29E-29 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS11535 072a0fdc11b33b207ec0b009121a4f56 226 Pfam PF02230 Phospholipase/Carboxylesterase 6 202 1.1E-34 T 14-09-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 PAJ_RS11535 072a0fdc11b33b207ec0b009121a4f56 226 Gene3D G3DSA:3.40.50.1820 3 197 1.5E-30 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 SUPERFAMILY SSF50249 16 102 3.64E-18 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 Gene3D G3DSA:3.30.930.10 109 462 1.6E-111 T 14-09-2016 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 SUPERFAMILY SSF55681 97 464 6.77E-96 T 14-09-2016 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 46.182 T 14-09-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 Gene3D G3DSA:2.40.50.140 16 104 3.4E-17 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 PANTHER PTHR22594 6 180 4.7E-249 T 14-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 PANTHER PTHR22594 199 464 4.7E-249 T 14-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 3.7E-208 T 14-09-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 1.5E-12 T 14-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 4.5E-81 T 14-09-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 3.8E-14 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 3.8E-14 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 3.8E-14 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 3.8E-14 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 PANTHER PTHR22594:SF6 6 180 4.7E-249 T 14-09-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 PAJ_RS03725 85f5b74e5a529c53fbee53498c4505bf 466 PANTHER PTHR22594:SF6 199 464 4.7E-249 T 14-09-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 PAJ_RS21120 965fb55db655a7bf6383fc35acadf027 157 SUPERFAMILY SSF158682 3 124 6.8E-21 T 14-09-2016 IPR029024 TerB-like PAJ_RS21120 965fb55db655a7bf6383fc35acadf027 157 Gene3D G3DSA:1.10.3680.10 3 148 1.5E-21 T 14-09-2016 IPR029024 TerB-like PAJ_RS21120 965fb55db655a7bf6383fc35acadf027 157 Pfam PF05099 Tellurite resistance protein TerB 7 116 2.5E-9 T 14-09-2016 IPR007791 Co-chaperone DjlA, N-terminal PAJ_RS20230 b3dd5e3902f6bed43f04711056b7c4d8 404 PANTHER PTHR38733 45 404 3.7E-49 T 14-09-2016 PAJ_RS20230 b3dd5e3902f6bed43f04711056b7c4d8 404 PANTHER PTHR38733:SF1 45 404 3.7E-49 T 14-09-2016 PAJ_RS20230 b3dd5e3902f6bed43f04711056b7c4d8 404 Pfam PF10117 McrBC 5-methylcytosine restriction system component 54 373 4.7E-81 T 14-09-2016 IPR019292 5-methylcytosine restriction system component PAJ_RS03380 4b8b92d127e79e081518ede6c4b5798b 211 SUPERFAMILY SSF53056 1 203 1.16E-62 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS03380 4b8b92d127e79e081518ede6c4b5798b 211 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 14-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS03380 4b8b92d127e79e081518ede6c4b5798b 211 Pfam PF00484 Carbonic anhydrase 34 188 7.4E-49 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS03380 4b8b92d127e79e081518ede6c4b5798b 211 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 14-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS03380 4b8b92d127e79e081518ede6c4b5798b 211 PANTHER PTHR11002:SF13 1 208 1.3E-79 T 14-09-2016 PAJ_RS03380 4b8b92d127e79e081518ede6c4b5798b 211 PANTHER PTHR11002 1 208 1.3E-79 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS03380 4b8b92d127e79e081518ede6c4b5798b 211 Gene3D G3DSA:3.40.1050.10 1 204 1.2E-67 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS03380 4b8b92d127e79e081518ede6c4b5798b 211 SMART SM00947 27 193 4.6E-62 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS08100 3c4ec89d56efd37a85fb689923458065 324 SUPERFAMILY SSF52728 163 322 6.02E-55 T 14-09-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 PAJ_RS08100 3c4ec89d56efd37a85fb689923458065 324 PANTHER PTHR33799 3 324 1.2E-213 T 14-09-2016 PAJ_RS08100 3c4ec89d56efd37a85fb689923458065 324 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 164 312 1.8E-57 T 14-09-2016 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 PAJ_RS08100 3c4ec89d56efd37a85fb689923458065 324 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 2 116 5.4E-49 T 14-09-2016 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS08100 3c4ec89d56efd37a85fb689923458065 324 Pfam PF03830 PTS system sorbose subfamily IIB component 165 311 7.3E-55 T 14-09-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 PAJ_RS08100 3c4ec89d56efd37a85fb689923458065 324 SUPERFAMILY SSF53062 3 128 4.19E-37 T 14-09-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 PAJ_RS08100 3c4ec89d56efd37a85fb689923458065 324 Gene3D G3DSA:3.40.35.10 163 322 2.0E-66 T 14-09-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 PAJ_RS08100 3c4ec89d56efd37a85fb689923458065 324 Pfam PF03610 PTS system fructose IIA component 5 117 3.7E-34 T 14-09-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 PAJ_RS08100 3c4ec89d56efd37a85fb689923458065 324 PANTHER PTHR33799:SF3 3 324 1.2E-213 T 14-09-2016 PAJ_RS08100 3c4ec89d56efd37a85fb689923458065 324 Gene3D G3DSA:3.40.50.510 3 135 2.7E-48 T 14-09-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 PAJ_RS15660 c68ae10a26457e94a1afa0d27aecb9c9 188 PANTHER PTHR13061 13 177 1.1E-66 T 14-09-2016 PAJ_RS15660 c68ae10a26457e94a1afa0d27aecb9c9 188 Gene3D G3DSA:2.160.10.10 6 175 9.2E-43 T 14-09-2016 PAJ_RS15660 c68ae10a26457e94a1afa0d27aecb9c9 188 SUPERFAMILY SSF51161 3 175 2.08E-42 T 14-09-2016 IPR011004 Trimeric LpxA-like PAJ_RS15660 c68ae10a26457e94a1afa0d27aecb9c9 188 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 1.7E-7 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 Hamap MF_01533 HTH-type transcriptional activator RhaR [rhaR]. 1 279 47.221 T 14-09-2016 IPR023699 Transcription activator HTH, RhaR GO:0003700|GO:0005737|GO:0019299|GO:0045893 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 SUPERFAMILY SSF51215 11 157 1.7E-10 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 SUPERFAMILY SSF46689 227 277 5.38E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 256 2.5E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 272 2.5E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 Gene3D G3DSA:1.10.10.60 226 275 9.0E-16 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 PANTHER PTHR11019 1 280 1.9E-124 T 14-09-2016 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 SUPERFAMILY SSF46689 174 224 3.67E-5 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 Gene3D G3DSA:2.60.120.10 6 75 5.5E-9 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 226 268 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 SMART SM00342 189 272 2.7E-28 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 Pfam PF02311 AraC-like ligand binding domain 22 144 2.0E-15 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 Pfam PF12833 Helix-turn-helix domain 196 274 1.5E-21 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 Gene3D G3DSA:1.10.10.60 179 225 1.2E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS09655 19028fe13922d6ee7af7d4611e88d5f3 288 PANTHER PTHR11019:SF107 1 280 1.9E-124 T 14-09-2016 PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 SMART SM00345 11 68 0.0037 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 SMART SM00345 91 149 0.26 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 Gene3D G3DSA:1.20.120.530 153 298 5.9E-14 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.6E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.6E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 SUPERFAMILY SSF46785 3 72 1.6E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 SUPERFAMILY SSF48008 157 294 1.8E-13 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 60 2.5E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 Gene3D G3DSA:1.10.10.10 87 145 5.4E-6 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 SUPERFAMILY SSF46785 89 151 1.05E-6 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 Pfam PF07729 FCD domain 160 286 4.9E-11 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 SMART SM00895 159 287 1.7E-9 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 Gene3D G3DSA:1.10.10.10 2 76 2.3E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 PANTHER PTHR11751 11 75 3.6E-13 T 14-09-2016 PAJ_RS16745 6ff9d543f3fd1992e3fcf47bbe19da1f 300 PANTHER PTHR11751 157 175 3.6E-13 T 14-09-2016 PAJ_RS18400 bddf7370a54eceec0d8bf8c7da203cc5 301 Gene3D G3DSA:1.10.443.10 116 288 1.5E-52 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS18400 bddf7370a54eceec0d8bf8c7da203cc5 301 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 5 295 35.953 T 14-09-2016 IPR023009 Tyrosine recombinase XerC/XerD PAJ_RS18400 bddf7370a54eceec0d8bf8c7da203cc5 301 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 4.2E-23 T 14-09-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 PAJ_RS18400 bddf7370a54eceec0d8bf8c7da203cc5 301 PANTHER PTHR30349 1 297 2.5E-156 T 14-09-2016 PAJ_RS18400 bddf7370a54eceec0d8bf8c7da203cc5 301 SUPERFAMILY SSF56349 110 293 2.88E-54 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PAJ_RS18400 bddf7370a54eceec0d8bf8c7da203cc5 301 PANTHER PTHR30349:SF17 1 297 2.5E-156 T 14-09-2016 PAJ_RS18400 bddf7370a54eceec0d8bf8c7da203cc5 301 SUPERFAMILY SSF47823 7 100 3.73E-9 T 14-09-2016 IPR010998 Integrase, Lambda-type, N-terminal PAJ_RS18400 bddf7370a54eceec0d8bf8c7da203cc5 301 Gene3D G3DSA:1.10.150.130 6 101 4.1E-23 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal PAJ_RS18400 bddf7370a54eceec0d8bf8c7da203cc5 301 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 11 297 1.0E-104 T 14-09-2016 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 PAJ_RS18400 bddf7370a54eceec0d8bf8c7da203cc5 301 Pfam PF00589 Phage integrase family 114 281 1.4E-52 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS06615 0314faa6fc68aa6d2f91c948f34523f3 145 SUPERFAMILY SSF55804 10 145 1.57E-29 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS06615 0314faa6fc68aa6d2f91c948f34523f3 145 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 9 145 6.5E-26 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS06615 0314faa6fc68aa6d2f91c948f34523f3 145 Gene3D G3DSA:3.40.930.10 2 145 7.2E-43 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS06615 0314faa6fc68aa6d2f91c948f34523f3 145 PANTHER PTHR36203 1 145 3.8E-37 T 14-09-2016 PAJ_RS13190 13293f04c3b03998f0d2d7774f249e53 293 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 284 20.895 T 14-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 PAJ_RS13190 13293f04c3b03998f0d2d7774f249e53 293 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 287 1.8E-106 T 14-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 PAJ_RS13190 13293f04c3b03998f0d2d7774f249e53 293 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 14-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 PAJ_RS13190 13293f04c3b03998f0d2d7774f249e53 293 PANTHER PTHR30589 2 288 1.6E-133 T 14-09-2016 PAJ_RS13190 13293f04c3b03998f0d2d7774f249e53 293 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 279 2.9E-79 T 14-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 PAJ_RS13190 13293f04c3b03998f0d2d7774f249e53 293 PANTHER PTHR30589:SF0 2 288 1.6E-133 T 14-09-2016 PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 Pfam PF08447 PAS fold 55 142 1.0E-18 T 14-09-2016 IPR013655 PAS fold-3 GO:0005515 PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 SUPERFAMILY SSF55785 36 150 8.86E-17 T 14-09-2016 IPR000014 PAS domain PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 Pfam PF00990 Diguanylate cyclase, GGDEF domain 159 308 1.5E-31 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 SMART SM00267 148 314 5.4E-40 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 Gene3D G3DSA:3.30.70.270 169 313 1.2E-40 T 14-09-2016 PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 PANTHER PTHR10799 188 308 1.2E-20 T 14-09-2016 PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 155 312 3.4E-32 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 PANTHER PTHR10799:SF710 188 308 1.2E-20 T 14-09-2016 PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 SUPERFAMILY SSF55073 164 312 2.67E-35 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 Gene3D G3DSA:3.30.450.20 8 168 1.5E-28 T 14-09-2016 PAJ_RS13675 a8aeb6adb7be95dc6039a4f222abedaf 319 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 49 155 1.4E-9 T 14-09-2016 IPR000014 PAS domain PAJ_RS07230 ef226f27b5cb3b92644f603325cc9edc 215 PANTHER PTHR30177:SF4 2 215 5.4E-86 T 14-09-2016 PAJ_RS07230 ef226f27b5cb3b92644f603325cc9edc 215 Gene3D G3DSA:1.10.3720.10 9 203 6.1E-36 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07230 ef226f27b5cb3b92644f603325cc9edc 215 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 205 8.0E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07230 ef226f27b5cb3b92644f603325cc9edc 215 SUPERFAMILY SSF161098 11 204 1.03E-40 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07230 ef226f27b5cb3b92644f603325cc9edc 215 PANTHER PTHR30177 2 215 5.4E-86 T 14-09-2016 PAJ_RS17890 37092d8107de271d8be3be1c9807b63f 249 Gene3D G3DSA:3.20.20.150 1 248 1.5E-76 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS17890 37092d8107de271d8be3be1c9807b63f 249 SUPERFAMILY SSF51658 3 248 1.9E-55 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 SUPERFAMILY SSF52096 25 282 2.49E-90 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 PANTHER PTHR22855:SF17 1 286 2.6E-184 T 14-09-2016 PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 38.79 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 4.7E-39 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 4.7E-39 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 4.7E-39 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 4.7E-39 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 4.7E-39 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 Gene3D G3DSA:3.90.226.10 19 281 1.6E-80 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 PANTHER PTHR22855 1 286 2.6E-184 T 14-09-2016 PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 Pfam PF01039 Carboxyl transferase domain 97 239 1.6E-17 T 14-09-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS10795 791c0e62b14ced83f4f9e96b994a85ff 304 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 283 8.4E-151 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS15285 0f0f9b61fe456fd230577d85bb35c424 247 Pfam PF00459 Inositol monophosphatase family 5 234 2.1E-48 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS15285 0f0f9b61fe456fd230577d85bb35c424 247 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 14-09-2016 IPR020583 Inositol monophosphatase, metal-binding site PAJ_RS15285 0f0f9b61fe456fd230577d85bb35c424 247 Gene3D G3DSA:3.30.540.10 2 148 8.4E-46 T 14-09-2016 PAJ_RS15285 0f0f9b61fe456fd230577d85bb35c424 247 PANTHER PTHR20854 1 244 2.9E-85 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS15285 0f0f9b61fe456fd230577d85bb35c424 247 SUPERFAMILY SSF56655 1 243 1.83E-73 T 14-09-2016 PAJ_RS15285 0f0f9b61fe456fd230577d85bb35c424 247 Gene3D G3DSA:3.40.190.80 149 244 7.9E-38 T 14-09-2016 PAJ_RS15285 0f0f9b61fe456fd230577d85bb35c424 247 PANTHER PTHR20854:SF5 1 244 2.9E-85 T 14-09-2016 PAJ_RS15285 0f0f9b61fe456fd230577d85bb35c424 247 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 1 245 8.3E-105 T 14-09-2016 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 PAJ_RS06415 0a0f292da9bc098cf88147833c30621b 327 SUPERFAMILY SSF53822 26 324 7.54E-70 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS06415 0a0f292da9bc098cf88147833c30621b 327 PANTHER PTHR30036 1 326 1.6E-126 T 14-09-2016 PAJ_RS06415 0a0f292da9bc098cf88147833c30621b 327 Gene3D G3DSA:3.40.50.2300 149 297 2.4E-54 T 14-09-2016 PAJ_RS06415 0a0f292da9bc098cf88147833c30621b 327 PANTHER PTHR30036:SF1 1 326 1.6E-126 T 14-09-2016 PAJ_RS06415 0a0f292da9bc098cf88147833c30621b 327 PIRSF PIRSF002816 1 326 2.4E-151 T 14-09-2016 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 PAJ_RS06415 0a0f292da9bc098cf88147833c30621b 327 Gene3D G3DSA:3.40.50.2300 25 148 1.1E-44 T 14-09-2016 PAJ_RS06415 0a0f292da9bc098cf88147833c30621b 327 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 26 319 8.3E-91 T 14-09-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain PAJ_RS03010 4d214ddaa7198949d39362d4dcbfe99e 364 Pfam PF07759 Protein of unknown function (DUF1615) 49 363 1.5E-143 T 14-09-2016 IPR011673 Protein of unknown function DUF1615 PAJ_RS03010 4d214ddaa7198949d39362d4dcbfe99e 364 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 13 363 3.0E-140 T 14-09-2016 IPR011673 Protein of unknown function DUF1615 PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 SUPERFAMILY SSF55781 26 159 5.89E-23 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 Pfam PF01590 GAF domain 26 153 3.4E-9 T 14-09-2016 IPR003018 GAF domain GO:0005515 PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 SMART SM00065 25 167 1.8E-7 T 14-09-2016 IPR003018 GAF domain GO:0005515 PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 PANTHER PTHR33121:SF13 302 586 9.2E-74 T 14-09-2016 PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 PANTHER PTHR33121 302 586 9.2E-74 T 14-09-2016 PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 SUPERFAMILY SSF141868 341 586 2.09E-70 T 14-09-2016 IPR001633 EAL domain PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 Gene3D G3DSA:3.30.450.40 24 159 1.0E-11 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 Gene3D G3DSA:3.20.20.450 338 586 3.0E-76 T 14-09-2016 IPR001633 EAL domain PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 Gene3D G3DSA:3.30.70.270 166 326 1.2E-6 T 14-09-2016 PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 SMART SM00052 334 580 1.8E-69 T 14-09-2016 IPR001633 EAL domain PAJ_RS14895 51fff96d16dee13359d9571cd6b34fae 593 Pfam PF00563 EAL domain 340 575 5.4E-62 T 14-09-2016 IPR001633 EAL domain PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PANTHER PTHR30009:SF0 470 651 0.0 T 14-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PANTHER PTHR30009:SF0 1 418 0.0 T 14-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 Pfam PF01578 Cytochrome C assembly protein 89 296 7.3E-54 T 14-09-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.7E-94 T 14-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 1.7E-94 T 14-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 1.7E-94 T 14-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 1.7E-94 T 14-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 1.7E-94 T 14-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 1.7E-94 T 14-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.7E-94 T 14-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 1.7E-94 T 14-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 9.4E-61 T 14-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 9.4E-61 T 14-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 9.4E-61 T 14-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 9.4E-61 T 14-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 9.4E-61 T 14-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 9.4E-61 T 14-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 9.4E-61 T 14-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 641 2.1E-282 T 14-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PANTHER PTHR30009 1 418 0.0 T 14-09-2016 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 PANTHER PTHR30009 470 651 0.0 T 14-09-2016 PAJ_RS10960 ea30755a205ca3ad354e85201863f9a8 652 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 637 1.8E-130 T 14-09-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal PAJ_RS13805 995d0512637368c2ccc46384d5add4c1 104 Pfam PF07377 Protein of unknown function (DUF1493) 20 103 1.4E-14 T 14-09-2016 IPR010862 Protein of unknown function DUF1493 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 7.8E-34 T 14-09-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 Gene3D G3DSA:2.40.50.140 1 114 1.1E-50 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 Gene3D G3DSA:2.30.30.30 119 195 1.5E-33 T 14-09-2016 IPR014722 Ribosomal protein L2 domain 2 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 SMART SM01383 42 118 1.4E-48 T 14-09-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.121 T 14-09-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 6.6E-55 T 14-09-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 Gene3D G3DSA:4.10.950.10 196 272 2.6E-34 T 14-09-2016 IPR014726 Ribosomal protein L2, domain 3 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 272 1.4E-131 T 14-09-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 SMART SM01382 124 251 2.3E-88 T 14-09-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 PIRSF PIRSF002158 12 273 2.5E-99 T 14-09-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 SUPERFAMILY SSF50104 127 269 3.49E-59 T 14-09-2016 IPR008991 Translation protein SH3-like domain PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 SUPERFAMILY SSF50249 3 125 6.85E-50 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 14-09-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 PAJ_RS15840 8e07d5d4350eaefaee5889f792af48ad 273 PANTHER PTHR13691 1 273 1.0E-145 T 14-09-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS18695 38e4b66bf53a6f1907f66d6d88a1cdf2 507 PANTHER PTHR11751:SF275 86 469 1.1E-185 T 14-09-2016 PAJ_RS18695 38e4b66bf53a6f1907f66d6d88a1cdf2 507 Gene3D G3DSA:3.40.640.10 133 351 7.8E-69 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS18695 38e4b66bf53a6f1907f66d6d88a1cdf2 507 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 7.5E-14 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS18695 38e4b66bf53a6f1907f66d6d88a1cdf2 507 Pfam PF00155 Aminotransferase class I and II 105 458 2.3E-37 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS18695 38e4b66bf53a6f1907f66d6d88a1cdf2 507 PANTHER PTHR11751 86 469 1.1E-185 T 14-09-2016 PAJ_RS18695 38e4b66bf53a6f1907f66d6d88a1cdf2 507 Gene3D G3DSA:1.10.10.10 1 69 1.4E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18695 38e4b66bf53a6f1907f66d6d88a1cdf2 507 Gene3D G3DSA:3.90.1150.10 352 458 1.9E-8 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS18695 38e4b66bf53a6f1907f66d6d88a1cdf2 507 SUPERFAMILY SSF53383 81 466 1.65E-94 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS18695 38e4b66bf53a6f1907f66d6d88a1cdf2 507 SMART SM00345 7 66 1.2E-17 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS18695 38e4b66bf53a6f1907f66d6d88a1cdf2 507 SUPERFAMILY SSF46785 1 70 3.63E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09920 647da1ed3af1b688552bda4c54d65975 420 Pfam PF04230 Polysaccharide pyruvyl transferase 13 353 1.2E-34 T 14-09-2016 IPR007345 Polysaccharide pyruvyl transferase PAJ_RS09920 647da1ed3af1b688552bda4c54d65975 420 PANTHER PTHR36836 1 82 5.9E-112 T 14-09-2016 PAJ_RS09920 647da1ed3af1b688552bda4c54d65975 420 PANTHER PTHR36836 102 420 5.9E-112 T 14-09-2016 PAJ_RS09920 647da1ed3af1b688552bda4c54d65975 420 PANTHER PTHR36836:SF1 1 82 5.9E-112 T 14-09-2016 PAJ_RS09920 647da1ed3af1b688552bda4c54d65975 420 PANTHER PTHR36836:SF1 102 420 5.9E-112 T 14-09-2016 PAJ_RS20675 8b33405796134f27dcdcaf25a5a52083 351 PANTHER PTHR30146 8 336 7.7E-99 T 14-09-2016 PAJ_RS20675 8b33405796134f27dcdcaf25a5a52083 351 Gene3D G3DSA:1.10.260.40 9 61 3.5E-23 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS20675 8b33405796134f27dcdcaf25a5a52083 351 SUPERFAMILY SSF53822 68 336 3.03E-67 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS20675 8b33405796134f27dcdcaf25a5a52083 351 SMART SM00354 8 79 1.6E-25 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS20675 8b33405796134f27dcdcaf25a5a52083 351 SUPERFAMILY SSF47413 8 67 8.91E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS20675 8b33405796134f27dcdcaf25a5a52083 351 Pfam PF13377 Periplasmic binding protein-like domain 176 314 2.0E-33 T 14-09-2016 PAJ_RS20675 8b33405796134f27dcdcaf25a5a52083 351 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 56 5.9E-14 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS20675 8b33405796134f27dcdcaf25a5a52083 351 Gene3D G3DSA:3.40.50.2300 62 181 1.1E-37 T 14-09-2016 PAJ_RS20675 8b33405796134f27dcdcaf25a5a52083 351 Gene3D G3DSA:3.40.50.2300 182 311 2.3E-46 T 14-09-2016 PAJ_RS00870 0631e274c289976762b2352e8917062b 312 PANTHER PTHR30126 3 307 4.6E-122 T 14-09-2016 PAJ_RS00870 0631e274c289976762b2352e8917062b 312 Pfam PF03466 LysR substrate binding domain 90 292 6.4E-39 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS00870 0631e274c289976762b2352e8917062b 312 SUPERFAMILY SSF53850 91 295 7.29E-41 T 14-09-2016 PAJ_RS00870 0631e274c289976762b2352e8917062b 312 Gene3D G3DSA:1.10.10.10 5 84 1.4E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00870 0631e274c289976762b2352e8917062b 312 SUPERFAMILY SSF46785 6 113 2.57E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00870 0631e274c289976762b2352e8917062b 312 Gene3D G3DSA:3.40.190.10 179 258 1.4E-18 T 14-09-2016 PAJ_RS00870 0631e274c289976762b2352e8917062b 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.8E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00870 0631e274c289976762b2352e8917062b 312 PANTHER PTHR30126:SF15 3 307 4.6E-122 T 14-09-2016 PAJ_RS00870 0631e274c289976762b2352e8917062b 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.5E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00870 0631e274c289976762b2352e8917062b 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.5E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00870 0631e274c289976762b2352e8917062b 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.5E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00870 0631e274c289976762b2352e8917062b 312 Gene3D G3DSA:3.40.190.10 93 178 2.3E-23 T 14-09-2016 PAJ_RS12490 8e87fcdd366498bdb13b58cea7d7f8fd 111 Pfam PF09400 Protein of unknown function (DUF2002) 1 110 2.4E-61 T 14-09-2016 IPR018994 Protein of unknown function DUF2002 PAJ_RS12490 8e87fcdd366498bdb13b58cea7d7f8fd 111 SUPERFAMILY SSF159894 1 111 9.15E-59 T 14-09-2016 PAJ_RS15890 ae87f1bba4b34d11a166f0b663be87e1 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.297 T 14-09-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 PAJ_RS15890 ae87f1bba4b34d11a166f0b663be87e1 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 14-09-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 PAJ_RS15890 ae87f1bba4b34d11a166f0b663be87e1 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.1E-65 T 14-09-2016 IPR023798 Ribosomal protein S7 domain PAJ_RS15890 ae87f1bba4b34d11a166f0b663be87e1 156 SUPERFAMILY SSF47973 6 149 1.83E-60 T 14-09-2016 IPR023798 Ribosomal protein S7 domain PAJ_RS15890 ae87f1bba4b34d11a166f0b663be87e1 156 Gene3D G3DSA:1.10.455.10 8 156 2.6E-67 T 14-09-2016 IPR023798 Ribosomal protein S7 domain PAJ_RS15890 ae87f1bba4b34d11a166f0b663be87e1 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.7E-71 T 14-09-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 PAJ_RS15890 ae87f1bba4b34d11a166f0b663be87e1 156 PANTHER PTHR11205 1 156 5.4E-96 T 14-09-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 PAJ_RS15890 ae87f1bba4b34d11a166f0b663be87e1 156 PIRSF PIRSF002122 3 156 3.4E-63 T 14-09-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 PAJ_RS04640 fb2772efa76e64c51398978214c1e677 155 Gene3D G3DSA:1.20.1290.10 16 151 1.5E-44 T 14-09-2016 IPR029032 AhpD-like PAJ_RS04640 fb2772efa76e64c51398978214c1e677 155 SUPERFAMILY SSF69118 16 151 5.21E-39 T 14-09-2016 IPR029032 AhpD-like PAJ_RS04640 fb2772efa76e64c51398978214c1e677 155 PANTHER PTHR34846:SF2 19 148 4.2E-14 T 14-09-2016 PAJ_RS04640 fb2772efa76e64c51398978214c1e677 155 PANTHER PTHR34846 19 148 4.2E-14 T 14-09-2016 PAJ_RS04640 fb2772efa76e64c51398978214c1e677 155 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 36 84 2.0E-14 T 14-09-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PAJ_RS04640 fb2772efa76e64c51398978214c1e677 155 Pfam PF02627 Carboxymuconolactone decarboxylase family 20 101 1.5E-17 T 14-09-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PAJ_RS08900 71d1641f099e5d331a97a09cee969d4d 422 Pfam PF02120 Flagellar hook-length control protein FliK 289 371 1.5E-21 T 14-09-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal PAJ_RS08900 71d1641f099e5d331a97a09cee969d4d 422 PANTHER PTHR37533 102 422 1.3E-49 T 14-09-2016 PAJ_RS08900 71d1641f099e5d331a97a09cee969d4d 422 PRINTS PR01007 Flagellar hook-length control protein signature 279 301 9.6E-38 T 14-09-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 PAJ_RS08900 71d1641f099e5d331a97a09cee969d4d 422 PRINTS PR01007 Flagellar hook-length control protein signature 304 322 9.6E-38 T 14-09-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 PAJ_RS08900 71d1641f099e5d331a97a09cee969d4d 422 PRINTS PR01007 Flagellar hook-length control protein signature 337 360 9.6E-38 T 14-09-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 PAJ_RS08900 71d1641f099e5d331a97a09cee969d4d 422 PRINTS PR01007 Flagellar hook-length control protein signature 27 44 9.6E-38 T 14-09-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 PAJ_RS08900 71d1641f099e5d331a97a09cee969d4d 422 PRINTS PR01007 Flagellar hook-length control protein signature 9 22 9.6E-38 T 14-09-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 PAJ_RS08900 71d1641f099e5d331a97a09cee969d4d 422 PRINTS PR01007 Flagellar hook-length control protein signature 322 337 9.6E-38 T 14-09-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 PAJ_RS08900 71d1641f099e5d331a97a09cee969d4d 422 PRINTS PR01007 Flagellar hook-length control protein signature 256 278 9.6E-38 T 14-09-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 PAJ_RS08900 71d1641f099e5d331a97a09cee969d4d 422 PANTHER PTHR37533:SF2 102 422 1.3E-49 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 14-09-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 124 8.3E-15 T 14-09-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Gene3D G3DSA:2.20.25.90 228 274 1.7E-14 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 SUPERFAMILY SSF53706 219 686 1.81E-80 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 PANTHER PTHR11615:SF134 739 904 0.0 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 PANTHER PTHR11615:SF134 364 430 0.0 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Gene3D G3DSA:3.10.20.30 3 73 8.9E-7 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Gene3D G3DSA:3.30.70.20 198 227 4.7E-5 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Gene3D G3DSA:3.30.70.20 147 157 4.7E-5 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Pfam PF00384 Molybdopterin oxidoreductase 546 638 1.2E-8 T 14-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 SUPERFAMILY SSF54292 1 77 2.17E-18 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Gene3D G3DSA:2.40.40.20 814 888 1.8E-10 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 SUPERFAMILY SSF50692 814 890 5.2E-13 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 3.4E-10 T 14-09-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 14-09-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 655 6.1E-202 T 14-09-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 SUPERFAMILY SSF54862 82 213 2.09E-34 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 PANTHER PTHR11615 496 680 0.0 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 PANTHER PTHR11615 3 320 0.0 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 PANTHER PTHR11615:SF134 496 680 0.0 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 PANTHER PTHR11615:SF134 3 320 0.0 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 14-09-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 SMART SM00929 88 128 1.9E-19 T 14-09-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Gene3D G3DSA:3.40.50.740 504 687 1.3E-36 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Gene3D G3DSA:3.40.50.740 292 340 1.3E-36 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Pfam PF01568 Molydopterin dinucleotide binding domain 822 889 7.1E-7 T 14-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 PANTHER PTHR11615 739 904 0.0 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 PANTHER PTHR11615 364 430 0.0 T 14-09-2016 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 SMART SM00926 221 275 3.5E-10 T 14-09-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PAJ_RS10605 0f74a9ab3f93a4dd9c47023384ee98bd 907 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 8.1E-11 T 14-09-2016 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 24 184 3.9E-43 T 14-09-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 PANTHER PTHR30562:SF7 13 481 2.8E-207 T 14-09-2016 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 SUPERFAMILY SSF48179 279 482 4.42E-64 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 212 457 6.8E-87 T 14-09-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 Gene3D G3DSA:1.10.1040.10 278 483 3.2E-73 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 PRINTS PR00084 Mannitol dehydrogenase signature 175 188 1.0E-20 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 PRINTS PR00084 Mannitol dehydrogenase signature 244 259 1.0E-20 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 PRINTS PR00084 Mannitol dehydrogenase signature 25 35 1.0E-20 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 PRINTS PR00084 Mannitol dehydrogenase signature 214 227 1.0E-20 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 Gene3D G3DSA:3.40.50.720 5 277 2.6E-106 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 PANTHER PTHR30562 13 481 2.8E-207 T 14-09-2016 PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 SUPERFAMILY SSF51735 4 277 1.22E-93 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10055 d45638f9f87cc77a97b4229f5c7aba76 488 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 214 226 - T 14-09-2016 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 SUPERFAMILY SSF53850 92 292 4.03E-32 T 14-09-2016 PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.4E-17 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 PANTHER PTHR30346 1 290 6.8E-51 T 14-09-2016 PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 Gene3D G3DSA:3.40.190.10 170 261 5.9E-11 T 14-09-2016 PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 Pfam PF03466 LysR substrate binding domain 90 288 4.8E-31 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 Gene3D G3DSA:3.40.190.10 92 169 1.4E-16 T 14-09-2016 PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 Gene3D G3DSA:1.10.10.10 1 84 4.0E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 SUPERFAMILY SSF46785 1 111 2.88E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS05255 e02dfc89db86ffa329982064be520f23 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 5.6E-69 T 14-09-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 38.522 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 SUPERFAMILY SSF53223 3 122 8.92E-41 T 14-09-2016 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 PANTHER PTHR10025 1 287 2.4E-177 T 14-09-2016 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 6.1E-89 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 6.1E-89 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 6.1E-89 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 6.1E-89 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 6.1E-89 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 6.1E-89 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 6.1E-89 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 14-09-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 Gene3D G3DSA:3.40.50.720 140 264 1.8E-52 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 1.0E-39 T 14-09-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 SUPERFAMILY SSF51735 123 282 3.95E-52 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 Gene3D G3DSA:3.40.192.10 7 139 1.8E-51 T 14-09-2016 PAJ_RS02030 b5eb87760fd49546a2f037efa6057422 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 14-09-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PAJ_RS14320 ac150308b906440a93ca6591e5486bff 467 SUPERFAMILY SSF46785 3 76 3.54E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14320 ac150308b906440a93ca6591e5486bff 467 Pfam PF00155 Aminotransferase class I and II 142 443 1.4E-33 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS14320 ac150308b906440a93ca6591e5486bff 467 SUPERFAMILY SSF53383 90 463 7.75E-93 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS14320 ac150308b906440a93ca6591e5486bff 467 Gene3D G3DSA:1.10.10.10 2 67 5.2E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14320 ac150308b906440a93ca6591e5486bff 467 PANTHER PTHR11751:SF314 81 463 1.6E-178 T 14-09-2016 PAJ_RS14320 ac150308b906440a93ca6591e5486bff 467 Gene3D G3DSA:3.40.640.10 141 352 8.9E-70 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS14320 ac150308b906440a93ca6591e5486bff 467 PANTHER PTHR11751 81 463 1.6E-178 T 14-09-2016 PAJ_RS14320 ac150308b906440a93ca6591e5486bff 467 SMART SM00345 7 66 9.1E-14 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS14320 ac150308b906440a93ca6591e5486bff 467 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 2.9E-13 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS15125 19196e56fb81d465fdd0fd29f36ec171 377 Gene3D G3DSA:2.30.40.10 303 346 2.1E-6 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS15125 19196e56fb81d465fdd0fd29f36ec171 377 PIRSF PIRSF039004 1 376 3.4E-130 T 14-09-2016 IPR020043 Amidohydrolase EF0837/AHA3915, putative KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- PAJ_RS15125 19196e56fb81d465fdd0fd29f36ec171 377 Gene3D G3DSA:2.30.40.10 17 56 9.7E-6 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS15125 19196e56fb81d465fdd0fd29f36ec171 377 TIGRFAM TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family 2 363 6.7E-165 T 14-09-2016 IPR020043 Amidohydrolase EF0837/AHA3915, putative KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- PAJ_RS15125 19196e56fb81d465fdd0fd29f36ec171 377 SUPERFAMILY SSF51556 51 316 1.33E-70 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS15125 19196e56fb81d465fdd0fd29f36ec171 377 Gene3D G3DSA:3.20.20.140 57 302 2.3E-115 T 14-09-2016 PAJ_RS15125 19196e56fb81d465fdd0fd29f36ec171 377 SUPERFAMILY SSF51338 317 365 1.18E-14 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS15125 19196e56fb81d465fdd0fd29f36ec171 377 SUPERFAMILY SSF51338 1 51 1.18E-14 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS03185 d2c9ac99f06f8d49ddd0ed0c1baa67a2 437 SUPERFAMILY SSF103473 6 426 2.62E-78 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS03185 d2c9ac99f06f8d49ddd0ed0c1baa67a2 437 Gene3D G3DSA:1.20.1250.20 7 206 2.0E-49 T 14-09-2016 PAJ_RS03185 d2c9ac99f06f8d49ddd0ed0c1baa67a2 437 PANTHER PTHR11662 6 429 2.7E-210 T 14-09-2016 PAJ_RS03185 d2c9ac99f06f8d49ddd0ed0c1baa67a2 437 PANTHER PTHR11662:SF18 6 429 2.7E-210 T 14-09-2016 PAJ_RS03185 d2c9ac99f06f8d49ddd0ed0c1baa67a2 437 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 20 423 1.6E-127 T 14-09-2016 IPR004744 D-galactonate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS03185 d2c9ac99f06f8d49ddd0ed0c1baa67a2 437 PIRSF PIRSF002808 2 427 1.2E-41 T 14-09-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS03185 d2c9ac99f06f8d49ddd0ed0c1baa67a2 437 Pfam PF07690 Major Facilitator Superfamily 18 304 1.0E-52 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS03185 d2c9ac99f06f8d49ddd0ed0c1baa67a2 437 Gene3D G3DSA:1.20.1250.20 232 423 3.8E-30 T 14-09-2016 PAJ_RS08825 1fe3dbdba17a4a19acb07cd851ed0fab 136 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 125 4.8E-43 T 14-09-2016 IPR003713 Flagellar protein FliS GO:0044780 PAJ_RS08825 1fe3dbdba17a4a19acb07cd851ed0fab 136 Gene3D G3DSA:1.20.120.340 8 132 4.3E-47 T 14-09-2016 IPR003713 Flagellar protein FliS GO:0044780 PAJ_RS08825 1fe3dbdba17a4a19acb07cd851ed0fab 136 SUPERFAMILY SSF101116 8 130 6.41E-42 T 14-09-2016 IPR003713 Flagellar protein FliS GO:0044780 PAJ_RS08825 1fe3dbdba17a4a19acb07cd851ed0fab 136 PANTHER PTHR34773 1 134 2.8E-49 T 14-09-2016 PAJ_RS08825 1fe3dbdba17a4a19acb07cd851ed0fab 136 PIRSF PIRSF039090 1 135 4.5E-45 T 14-09-2016 IPR003713 Flagellar protein FliS GO:0044780 PAJ_RS08825 1fe3dbdba17a4a19acb07cd851ed0fab 136 Pfam PF02561 Flagellar protein FliS 8 125 4.1E-41 T 14-09-2016 IPR003713 Flagellar protein FliS GO:0044780 PAJ_RS19055 2f883015cf1920f95996f9e032f17a81 449 Pfam PF00860 Permease family 26 409 1.6E-77 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS19055 2f883015cf1920f95996f9e032f17a81 449 PANTHER PTHR11119:SF43 7 444 3.2E-263 T 14-09-2016 PAJ_RS19055 2f883015cf1920f95996f9e032f17a81 449 PANTHER PTHR11119 7 444 3.2E-263 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 PANTHER PTHR33705:SF1 1 84 8.1E-41 T 14-09-2016 PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 14-09-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 4.5E-20 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 4.5E-20 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 4.5E-20 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 7.0E-28 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 SUPERFAMILY SSF55594 1 82 1.96E-27 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 Gene3D G3DSA:3.30.1340.10 1 83 1.8E-33 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 PANTHER PTHR33705 1 84 8.1E-41 T 14-09-2016 PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 14-09-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site PAJ_RS11325 7a5f56329730eec8eb4124f353a02094 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 4.4E-31 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS15120 086a117945260bfd3ca02624d21a9f02 371 Gene3D G3DSA:3.40.640.10 29 242 4.9E-25 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS15120 086a117945260bfd3ca02624d21a9f02 371 PANTHER PTHR32328 1 85 9.6E-174 T 14-09-2016 PAJ_RS15120 086a117945260bfd3ca02624d21a9f02 371 PANTHER PTHR32328 103 371 9.6E-174 T 14-09-2016 PAJ_RS15120 086a117945260bfd3ca02624d21a9f02 371 PANTHER PTHR32328:SF1 1 85 9.6E-174 T 14-09-2016 PAJ_RS15120 086a117945260bfd3ca02624d21a9f02 371 PANTHER PTHR32328:SF1 103 371 9.6E-174 T 14-09-2016 PAJ_RS15120 086a117945260bfd3ca02624d21a9f02 371 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 4 366 1.0E-173 T 14-09-2016 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 PAJ_RS15120 086a117945260bfd3ca02624d21a9f02 371 SUPERFAMILY SSF53383 8 366 1.34E-30 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS15120 086a117945260bfd3ca02624d21a9f02 371 Pfam PF03841 L-seryl-tRNA selenium transferase 100 264 6.9E-11 T 14-09-2016 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 PAJ_RS19750 b5d3228376f64175fdc5dd7626614d8c 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS19750 b5d3228376f64175fdc5dd7626614d8c 241 PANTHER PTHR24220:SF497 5 238 5.9E-149 T 14-09-2016 PAJ_RS19750 b5d3228376f64175fdc5dd7626614d8c 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 8.2E-122 T 14-09-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 PAJ_RS19750 b5d3228376f64175fdc5dd7626614d8c 241 SUPERFAMILY SSF52540 4 236 3.24E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19750 b5d3228376f64175fdc5dd7626614d8c 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 7.1E-8 T 14-09-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PAJ_RS19750 b5d3228376f64175fdc5dd7626614d8c 241 SMART SM00382 28 213 7.9E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS19750 b5d3228376f64175fdc5dd7626614d8c 241 Gene3D G3DSA:3.40.50.300 5 234 2.7E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19750 b5d3228376f64175fdc5dd7626614d8c 241 PANTHER PTHR24220 5 238 5.9E-149 T 14-09-2016 PAJ_RS19750 b5d3228376f64175fdc5dd7626614d8c 241 Pfam PF00005 ABC transporter 20 166 4.4E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06390 fbdfdfc54a89498b8fabeb988c26dd07 311 SUPERFAMILY SSF53850 101 302 1.05E-37 T 14-09-2016 PAJ_RS06390 fbdfdfc54a89498b8fabeb988c26dd07 311 Pfam PF03466 LysR substrate binding domain 102 303 3.2E-25 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS06390 fbdfdfc54a89498b8fabeb988c26dd07 311 Gene3D G3DSA:3.40.190.10 99 182 3.7E-14 T 14-09-2016 PAJ_RS06390 fbdfdfc54a89498b8fabeb988c26dd07 311 Gene3D G3DSA:3.40.190.10 183 274 7.3E-25 T 14-09-2016 PAJ_RS06390 fbdfdfc54a89498b8fabeb988c26dd07 311 SUPERFAMILY SSF46785 7 81 1.13E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06390 fbdfdfc54a89498b8fabeb988c26dd07 311 PANTHER PTHR30118 1 311 2.2E-86 T 14-09-2016 PAJ_RS06390 fbdfdfc54a89498b8fabeb988c26dd07 311 PANTHER PTHR30118:SF5 1 311 2.2E-86 T 14-09-2016 PAJ_RS06390 fbdfdfc54a89498b8fabeb988c26dd07 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 5.2E-14 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS06390 fbdfdfc54a89498b8fabeb988c26dd07 311 Gene3D G3DSA:1.10.10.10 7 85 2.5E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01255 f44a421565c1e4399bb1a943b9432a66 210 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 9 205 1.5E-78 T 14-09-2016 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00563+2.7.-.- PAJ_RS01255 f44a421565c1e4399bb1a943b9432a66 210 Pfam PF02734 DAK2 domain 32 205 2.3E-54 T 14-09-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 PAJ_RS01255 f44a421565c1e4399bb1a943b9432a66 210 SMART SM01120 32 206 4.5E-78 T 14-09-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 PAJ_RS01255 f44a421565c1e4399bb1a943b9432a66 210 SUPERFAMILY SSF101473 2 205 1.44E-56 T 14-09-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 PAJ_RS01255 f44a421565c1e4399bb1a943b9432a66 210 PANTHER PTHR28629 1 210 5.3E-82 T 14-09-2016 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 SUPERFAMILY SSF53067 249 468 1.34E-32 T 14-09-2016 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 243 2.7E-33 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 Hamap MF_01535 Rhamnulokinase [rhaB]. 6 482 50.801 T 14-09-2016 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5|UniPathway: UPA00541 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 PANTHER PTHR10196 1 477 1.4E-205 T 14-09-2016 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 Gene3D G3DSA:3.30.420.40 1 242 5.8E-31 T 14-09-2016 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 PANTHER PTHR10196:SF6 1 477 1.4E-205 T 14-09-2016 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 TIGRFAM TIGR02627 rhamnulo_kin: rhamnulokinase 7 458 2.3E-214 T 14-09-2016 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5|UniPathway: UPA00541 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 Gene3D G3DSA:3.30.420.40 250 482 1.7E-17 T 14-09-2016 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 253 439 1.6E-24 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 SUPERFAMILY SSF53067 6 245 5.11E-48 T 14-09-2016 PAJ_RS09645 9b627b420b7f1cee87defc862488c26b 493 PIRSF PIRSF000538 3 493 1.1E-42 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS19475 8fb6fe42dd5fd08f5b2e97711945759c 270 Gene3D G3DSA:3.30.450.40 88 268 2.4E-53 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS19475 8fb6fe42dd5fd08f5b2e97711945759c 270 Gene3D G3DSA:1.10.10.10 13 87 1.1E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19475 8fb6fe42dd5fd08f5b2e97711945759c 270 SUPERFAMILY SSF46785 20 93 5.22E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19475 8fb6fe42dd5fd08f5b2e97711945759c 270 Pfam PF09339 IclR helix-turn-helix domain 21 71 8.8E-15 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS19475 8fb6fe42dd5fd08f5b2e97711945759c 270 PANTHER PTHR30136:SF19 14 268 2.1E-157 T 14-09-2016 PAJ_RS19475 8fb6fe42dd5fd08f5b2e97711945759c 270 SUPERFAMILY SSF55781 86 268 2.16E-43 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS19475 8fb6fe42dd5fd08f5b2e97711945759c 270 PANTHER PTHR30136 14 268 2.1E-157 T 14-09-2016 PAJ_RS19475 8fb6fe42dd5fd08f5b2e97711945759c 270 Pfam PF01614 Bacterial transcriptional regulator 139 264 5.6E-40 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal PAJ_RS19475 8fb6fe42dd5fd08f5b2e97711945759c 270 SMART SM00346 19 109 4.8E-39 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS14590 b0e44e7608f386da49d640ce4889daba 436 Gene3D G3DSA:2.40.320.10 1 207 1.1E-37 T 14-09-2016 IPR023577 CYTH domain PAJ_RS14590 b0e44e7608f386da49d640ce4889daba 436 SUPERFAMILY SSF55154 1 217 7.36E-50 T 14-09-2016 IPR033469 CYTH-like domain PAJ_RS14590 b0e44e7608f386da49d640ce4889daba 436 PANTHER PTHR39569 2 433 2.9E-111 T 14-09-2016 PAJ_RS14590 b0e44e7608f386da49d640ce4889daba 436 SMART SM01118 2 202 2.9E-35 T 14-09-2016 IPR023577 CYTH domain PAJ_RS14590 b0e44e7608f386da49d640ce4889daba 436 Pfam PF01928 CYTH domain 3 196 1.2E-30 T 14-09-2016 IPR023577 CYTH domain PAJ_RS14590 b0e44e7608f386da49d640ce4889daba 436 PANTHER PTHR39569:SF1 2 433 2.9E-111 T 14-09-2016 PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 SUPERFAMILY SSF52540 528 704 5.61E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 PANTHER PTHR32309:SF17 492 724 1.3E-278 T 14-09-2016 PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 510 714 6.2E-44 T 14-09-2016 IPR005702 Exopolysaccharide synthesis protein GO:0045226 PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 531 706 1.6E-11 T 14-09-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 PANTHER PTHR32309:SF17 184 475 1.3E-278 T 14-09-2016 PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 PANTHER PTHR32309 184 475 1.3E-278 T 14-09-2016 PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 Pfam PF02706 Chain length determinant protein 19 251 3.6E-44 T 14-09-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 PANTHER PTHR32309 1 121 1.3E-278 T 14-09-2016 PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 Pfam PF13807 G-rich domain on putative tyrosine kinase 366 446 2.6E-34 T 14-09-2016 IPR032807 Tyrosine kinase, G-rich domain PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 Gene3D G3DSA:3.40.50.300 529 705 1.4E-33 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 PANTHER PTHR32309:SF17 1 121 1.3E-278 T 14-09-2016 PAJ_RS09950 90720bd02f8957b61cdaeb00779c9997 725 PANTHER PTHR32309 492 724 1.3E-278 T 14-09-2016 PAJ_RS18475 cf1c2890b54f034e24e9e4a6c1598703 446 Gene3D G3DSA:1.20.1250.20 23 222 3.0E-51 T 14-09-2016 PAJ_RS18475 cf1c2890b54f034e24e9e4a6c1598703 446 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 2.6E-163 T 14-09-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS18475 cf1c2890b54f034e24e9e4a6c1598703 446 Gene3D G3DSA:1.20.1250.20 246 441 2.3E-46 T 14-09-2016 PAJ_RS18475 cf1c2890b54f034e24e9e4a6c1598703 446 Pfam PF07690 Major Facilitator Superfamily 34 400 2.8E-43 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS18475 cf1c2890b54f034e24e9e4a6c1598703 446 PANTHER PTHR11662:SF141 1 444 1.2E-236 T 14-09-2016 PAJ_RS18475 cf1c2890b54f034e24e9e4a6c1598703 446 PIRSF PIRSF002808 5 446 5.7E-172 T 14-09-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS18475 cf1c2890b54f034e24e9e4a6c1598703 446 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 14-09-2016 IPR021159 Glycerate/sugar phosphate transporter, conserved site GO:0005215|GO:0006810|GO:0016021 PAJ_RS18475 cf1c2890b54f034e24e9e4a6c1598703 446 SUPERFAMILY SSF103473 10 441 1.01E-84 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS18475 cf1c2890b54f034e24e9e4a6c1598703 446 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 440 4.2E-257 T 14-09-2016 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 PAJ_RS18475 cf1c2890b54f034e24e9e4a6c1598703 446 PANTHER PTHR11662 1 444 1.2E-236 T 14-09-2016 PAJ_RS00080 ba92fa4ce23dad08ea8dafdb33e0c426 156 PANTHER PTHR10516 1 77 1.0E-19 T 14-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PAJ_RS00080 ba92fa4ce23dad08ea8dafdb33e0c426 156 PANTHER PTHR10516 133 145 1.0E-19 T 14-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PAJ_RS00080 ba92fa4ce23dad08ea8dafdb33e0c426 156 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 6 140 8.2E-13 T 14-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PAJ_RS00080 ba92fa4ce23dad08ea8dafdb33e0c426 156 SUPERFAMILY SSF54534 5 143 1.37E-34 T 14-09-2016 PAJ_RS00080 ba92fa4ce23dad08ea8dafdb33e0c426 156 Gene3D G3DSA:3.10.50.40 3 80 8.0E-19 T 14-09-2016 PAJ_RS00080 ba92fa4ce23dad08ea8dafdb33e0c426 156 Gene3D G3DSA:3.10.50.40 130 146 8.0E-19 T 14-09-2016 PAJ_RS00080 ba92fa4ce23dad08ea8dafdb33e0c426 156 PANTHER PTHR10516:SF329 1 77 1.0E-19 T 14-09-2016 PAJ_RS00080 ba92fa4ce23dad08ea8dafdb33e0c426 156 PANTHER PTHR10516:SF329 133 145 1.0E-19 T 14-09-2016 PAJ_RS06145 9e5f54515c91d4320dc51713ca2c6fd9 75 SUPERFAMILY SSF50182 24 73 6.54E-12 T 14-09-2016 IPR010920 LSM domain PAJ_RS06145 9e5f54515c91d4320dc51713ca2c6fd9 75 PANTHER PTHR37011:SF2 1 75 6.7E-19 T 14-09-2016 PAJ_RS06145 9e5f54515c91d4320dc51713ca2c6fd9 75 PANTHER PTHR37011 1 75 6.7E-19 T 14-09-2016 PAJ_RS06145 9e5f54515c91d4320dc51713ca2c6fd9 75 Gene3D G3DSA:2.30.30.100 20 75 3.4E-21 T 14-09-2016 PAJ_RS06145 9e5f54515c91d4320dc51713ca2c6fd9 75 Pfam PF06004 Bacterial protein of unknown function (DUF903) 26 72 8.3E-18 T 14-09-2016 IPR010305 Protein of unknown function DUF903 PAJ_RS07575 c399fe1a53781e8d648db81dad76dee5 288 Gene3D G3DSA:3.90.226.10 20 221 2.5E-32 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07575 c399fe1a53781e8d648db81dad76dee5 288 PANTHER PTHR11941 246 257 4.2E-20 T 14-09-2016 PAJ_RS07575 c399fe1a53781e8d648db81dad76dee5 288 PANTHER PTHR11941 7 209 4.2E-20 T 14-09-2016 PAJ_RS07575 c399fe1a53781e8d648db81dad76dee5 288 Pfam PF00378 Enoyl-CoA hydratase/isomerase 70 236 1.7E-18 T 14-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PAJ_RS07575 c399fe1a53781e8d648db81dad76dee5 288 SUPERFAMILY SSF52096 27 261 6.64E-34 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07575 c399fe1a53781e8d648db81dad76dee5 288 PANTHER PTHR11941:SF54 246 257 4.2E-20 T 14-09-2016 PAJ_RS07575 c399fe1a53781e8d648db81dad76dee5 288 PANTHER PTHR11941:SF54 7 209 4.2E-20 T 14-09-2016 PAJ_RS05310 45a4dc9fda42f1765496146b2f303197 527 PANTHER PTHR11785:SF358 475 494 1.1E-134 T 14-09-2016 PAJ_RS05310 45a4dc9fda42f1765496146b2f303197 527 PIRSF PIRSF006060 1 454 3.1E-81 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS05310 45a4dc9fda42f1765496146b2f303197 527 PANTHER PTHR11785 475 494 1.1E-134 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS05310 45a4dc9fda42f1765496146b2f303197 527 PANTHER PTHR11785:SF358 6 455 1.1E-134 T 14-09-2016 PAJ_RS05310 45a4dc9fda42f1765496146b2f303197 527 Pfam PF13520 Amino acid permease 10 437 4.9E-41 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS05310 45a4dc9fda42f1765496146b2f303197 527 PANTHER PTHR11785 6 455 1.1E-134 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 Gene3D G3DSA:3.30.365.10 290 365 5.0E-26 T 14-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 Gene3D G3DSA:3.30.365.10 148 180 5.0E-26 T 14-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 Gene3D G3DSA:3.90.1170.50 25 146 1.1E-36 T 14-09-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 Gene3D G3DSA:3.30.365.10 181 288 4.9E-35 T 14-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 166 709 1.0E-208 T 14-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 39 146 1.4E-22 T 14-09-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 PANTHER PTHR11908 18 559 0.0 T 14-09-2016 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 PANTHER PTHR11908 585 784 0.0 T 14-09-2016 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 SUPERFAMILY SSF54665 23 147 6.54E-37 T 14-09-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 PANTHER PTHR11908:SF66 18 559 0.0 T 14-09-2016 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 PANTHER PTHR11908:SF66 585 784 0.0 T 14-09-2016 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 25 780 0.0 T 14-09-2016 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 SUPERFAMILY SSF56003 146 779 3.53E-204 T 14-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 Gene3D G3DSA:3.30.365.10 458 614 6.2E-50 T 14-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 Gene3D G3DSA:3.30.365.10 366 457 4.9E-85 T 14-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 Gene3D G3DSA:3.30.365.10 624 778 4.9E-85 T 14-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PAJ_RS07180 731010cdc3d0eafad1acade9ec7964e9 788 SMART SM01008 39 146 4.3E-39 T 14-09-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PAJ_RS16145 d8521a76d5088ea0467c0daab9e28465 239 PANTHER PTHR26402:SF292 5 235 1.0E-115 T 14-09-2016 PAJ_RS16145 d8521a76d5088ea0467c0daab9e28465 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 1.7E-22 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS16145 d8521a76d5088ea0467c0daab9e28465 239 Gene3D G3DSA:1.10.10.10 132 235 1.3E-32 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16145 d8521a76d5088ea0467c0daab9e28465 239 SMART SM00448 5 116 8.6E-45 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS16145 d8521a76d5088ea0467c0daab9e28465 239 SUPERFAMILY SSF52172 3 126 8.4E-42 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS16145 d8521a76d5088ea0467c0daab9e28465 239 Gene3D G3DSA:3.40.50.2300 4 127 1.4E-42 T 14-09-2016 PAJ_RS16145 d8521a76d5088ea0467c0daab9e28465 239 PANTHER PTHR26402 5 235 1.0E-115 T 14-09-2016 PAJ_RS16145 d8521a76d5088ea0467c0daab9e28465 239 SUPERFAMILY SSF46894 132 234 2.07E-26 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS16145 d8521a76d5088ea0467c0daab9e28465 239 SMART SM00862 156 232 1.7E-23 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS16145 d8521a76d5088ea0467c0daab9e28465 239 Pfam PF00072 Response regulator receiver domain 7 117 1.3E-29 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 SUPERFAMILY SSF50615 2 75 1.94E-24 T 14-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 135 347 5.6E-64 T 14-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 PANTHER PTHR15184:SF44 1 465 0.0 T 14-09-2016 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 72 9.2E-20 T 14-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 Gene3D G3DSA:1.10.1140.10 350 465 2.0E-56 T 14-09-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 465 56.728 T 14-09-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 PANTHER PTHR15184 1 465 0.0 T 14-09-2016 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 SUPERFAMILY SSF47917 350 464 1.99E-54 T 14-09-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 Gene3D G3DSA:3.40.50.300 76 348 2.6E-106 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 SUPERFAMILY SSF52540 77 353 1.6E-87 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 Gene3D G3DSA:2.40.10.170 2 75 2.2E-30 T 14-09-2016 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 338 347 - T 14-09-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 SMART SM00382 147 410 1.3E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17655 c7b4505c577298c55e812e3037abfcc7 465 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 465 1.6E-257 T 14-09-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS20200 9be365c0575c1be2d2c8758bbc066e49 222 PANTHER PTHR33508 1 222 5.9E-120 T 14-09-2016 PAJ_RS20200 9be365c0575c1be2d2c8758bbc066e49 222 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 13 214 6.3E-36 T 14-09-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PAJ_RS20200 9be365c0575c1be2d2c8758bbc066e49 222 Pfam PF01914 MarC family integral membrane protein 6 217 2.9E-64 T 14-09-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PAJ_RS20200 9be365c0575c1be2d2c8758bbc066e49 222 PANTHER PTHR33508:SF2 1 222 5.9E-120 T 14-09-2016 PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PANTHER PTHR24321:SF6 4 240 4.6E-44 T 14-09-2016 PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 239 3.5E-51 T 14-09-2016 PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PANTHER PTHR24321 4 240 4.6E-44 T 14-09-2016 PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.9E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.9E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.9E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 1.9E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 1.9E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.9E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 2.0E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 2.0E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 2.0E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 Gene3D G3DSA:3.40.50.720 8 240 3.3E-66 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16845 494d6208a9644c34981cc0fc0457f375 244 SUPERFAMILY SSF51735 8 240 1.26E-64 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 14-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 SUPERFAMILY SSF51735 148 312 8.31E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 Pfam PF00107 Zinc-binding dehydrogenase 185 307 6.0E-25 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 PANTHER PTHR11695:SF582 15 347 5.1E-152 T 14-09-2016 PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 178 206 - T 14-09-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 PANTHER PTHR11695 15 347 5.1E-152 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 SMART SM00829 10 342 6.3E-7 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 143 1.0E-27 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 SUPERFAMILY SSF50129 5 173 8.07E-50 T 14-09-2016 IPR011032 GroES-like PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 Gene3D G3DSA:3.90.180.10 1 179 1.2E-64 T 14-09-2016 IPR011032 GroES-like PAJ_RS12555 26224b226f882daf94bf309707a0fe60 350 Gene3D G3DSA:3.40.50.720 180 292 5.9E-26 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05680 6078613fca25e6ec8d203b1c05b5f01c 331 PIRSF PIRSF017020 1 328 1.0E-115 T 14-09-2016 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96|UniPathway: UPA00185 PAJ_RS05680 6078613fca25e6ec8d203b1c05b5f01c 331 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 331 143.516 T 14-09-2016 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96|UniPathway: UPA00185 PAJ_RS05680 6078613fca25e6ec8d203b1c05b5f01c 331 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 3 320 9.8E-129 T 14-09-2016 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96|UniPathway: UPA00185 PAJ_RS05680 6078613fca25e6ec8d203b1c05b5f01c 331 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 45 321 5.1E-67 T 14-09-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 PAJ_RS05680 6078613fca25e6ec8d203b1c05b5f01c 331 SUPERFAMILY SSF53187 1 320 1.79E-84 T 14-09-2016 PAJ_RS05680 6078613fca25e6ec8d203b1c05b5f01c 331 Gene3D G3DSA:3.40.630.10 42 236 1.8E-15 T 14-09-2016 PAJ_RS05680 6078613fca25e6ec8d203b1c05b5f01c 331 PANTHER PTHR15162 1 324 1.2E-75 T 14-09-2016 PAJ_RS10290 c8dfc650c3d11472bacd9668ec3aee9b 189 Pfam PF00877 NlpC/P60 family 78 182 4.0E-32 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS10290 c8dfc650c3d11472bacd9668ec3aee9b 189 SUPERFAMILY SSF54001 67 184 7.52E-40 T 14-09-2016 PAJ_RS10290 c8dfc650c3d11472bacd9668ec3aee9b 189 PANTHER PTHR21666:SF210 7 37 4.0E-85 T 14-09-2016 PAJ_RS10290 c8dfc650c3d11472bacd9668ec3aee9b 189 PANTHER PTHR21666:SF210 69 187 4.0E-85 T 14-09-2016 PAJ_RS10290 c8dfc650c3d11472bacd9668ec3aee9b 189 PANTHER PTHR21666 7 37 4.0E-85 T 14-09-2016 PAJ_RS10290 c8dfc650c3d11472bacd9668ec3aee9b 189 PANTHER PTHR21666 69 187 4.0E-85 T 14-09-2016 PAJ_RS10290 c8dfc650c3d11472bacd9668ec3aee9b 189 Gene3D G3DSA:3.90.1720.10 67 185 1.5E-43 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS17660 624902c9a5130ca77eebf67a2d98fe3f 139 SUPERFAMILY SSF46604 89 137 1.46E-15 T 14-09-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain PAJ_RS17660 624902c9a5130ca77eebf67a2d98fe3f 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 3.7E-45 T 14-09-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17660 624902c9a5130ca77eebf67a2d98fe3f 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 84 1.5E-28 T 14-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17660 624902c9a5130ca77eebf67a2d98fe3f 139 Gene3D G3DSA:1.20.5.440 92 134 9.2E-25 T 14-09-2016 PAJ_RS17660 624902c9a5130ca77eebf67a2d98fe3f 139 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 133 7.4E-14 T 14-09-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain PAJ_RS17660 624902c9a5130ca77eebf67a2d98fe3f 139 Gene3D G3DSA:2.60.15.10 3 91 4.3E-29 T 14-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17660 624902c9a5130ca77eebf67a2d98fe3f 139 SUPERFAMILY SSF51344 3 86 6.41E-24 T 14-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17660 624902c9a5130ca77eebf67a2d98fe3f 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 2.0E-36 T 14-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17660 624902c9a5130ca77eebf67a2d98fe3f 139 PANTHER PTHR13822 1 139 3.1E-48 T 14-09-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17660 624902c9a5130ca77eebf67a2d98fe3f 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 21.244 T 14-09-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS07795 097029bf50ed674d1cfe5e4bded70013 306 PANTHER PTHR30465 1 306 9.1E-158 T 14-09-2016 PAJ_RS07795 097029bf50ed674d1cfe5e4bded70013 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 8.8E-39 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07795 097029bf50ed674d1cfe5e4bded70013 306 PANTHER PTHR30465:SF74 1 306 9.1E-158 T 14-09-2016 PAJ_RS07795 097029bf50ed674d1cfe5e4bded70013 306 Gene3D G3DSA:1.10.3720.10 89 302 3.0E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07795 097029bf50ed674d1cfe5e4bded70013 306 SUPERFAMILY SSF161098 90 291 2.83E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS17880 dc675ca84101bf008be6ca975a1ffb47 327 SUPERFAMILY SSF47413 2 57 9.38E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS17880 dc675ca84101bf008be6ca975a1ffb47 327 Gene3D G3DSA:3.40.50.2300 174 309 3.2E-20 T 14-09-2016 PAJ_RS17880 dc675ca84101bf008be6ca975a1ffb47 327 PANTHER PTHR30146 1 310 2.9E-58 T 14-09-2016 PAJ_RS17880 dc675ca84101bf008be6ca975a1ffb47 327 Gene3D G3DSA:3.40.50.2300 53 173 1.1E-27 T 14-09-2016 PAJ_RS17880 dc675ca84101bf008be6ca975a1ffb47 327 SUPERFAMILY SSF53822 67 321 4.93E-34 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS17880 dc675ca84101bf008be6ca975a1ffb47 327 Gene3D G3DSA:1.10.260.40 1 52 1.8E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS17880 dc675ca84101bf008be6ca975a1ffb47 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 9.9E-10 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS17880 dc675ca84101bf008be6ca975a1ffb47 327 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 59 305 2.3E-31 T 14-09-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain PAJ_RS17880 dc675ca84101bf008be6ca975a1ffb47 327 SMART SM00354 1 70 1.1E-19 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS09765 e7255ca14193ed52bd1e496e73e3a934 253 Pfam PF07722 Peptidase C26 8 224 9.1E-63 T 14-09-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 PAJ_RS09765 e7255ca14193ed52bd1e496e73e3a934 253 Gene3D G3DSA:3.40.50.880 6 252 3.9E-50 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS09765 e7255ca14193ed52bd1e496e73e3a934 253 PANTHER PTHR11922 27 253 4.8E-49 T 14-09-2016 PAJ_RS09765 e7255ca14193ed52bd1e496e73e3a934 253 SUPERFAMILY SSF52317 27 250 1.68E-39 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS09765 e7255ca14193ed52bd1e496e73e3a934 253 PANTHER PTHR11922:SF18 27 253 4.8E-49 T 14-09-2016 PAJ_RS08030 fc3a8b27be57785ac2ca707b48080153 270 Gene3D G3DSA:3.40.50.300 1 248 1.8E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08030 fc3a8b27be57785ac2ca707b48080153 270 SUPERFAMILY SSF52540 1 268 4.8E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08030 fc3a8b27be57785ac2ca707b48080153 270 PANTHER PTHR13696 1 258 1.6E-94 T 14-09-2016 PAJ_RS08030 fc3a8b27be57785ac2ca707b48080153 270 PANTHER PTHR13696:SF1 1 258 1.6E-94 T 14-09-2016 PAJ_RS08030 fc3a8b27be57785ac2ca707b48080153 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 3.5E-110 T 14-09-2016 IPR010223 ATP binding protein MinD, bacterial-type GO:0000918|GO:0016887 PAJ_RS08030 fc3a8b27be57785ac2ca707b48080153 270 PIRSF PIRSF003092 1 270 7.9E-99 T 14-09-2016 IPR025501 ATP binding protein MinD PAJ_RS08030 fc3a8b27be57785ac2ca707b48080153 270 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 217 3.0E-29 T 14-09-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain PAJ_RS19005 7089c7073451924af937c0e30620c2e3 197 PANTHER PTHR35332:SF2 6 196 5.1E-53 T 14-09-2016 PAJ_RS19005 7089c7073451924af937c0e30620c2e3 197 PANTHER PTHR35332 6 196 5.1E-53 T 14-09-2016 PAJ_RS19005 7089c7073451924af937c0e30620c2e3 197 Gene3D G3DSA:2.60.120.200 11 185 5.0E-23 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain PAJ_RS19005 7089c7073451924af937c0e30620c2e3 197 SUPERFAMILY SSF49899 10 185 4.12E-34 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain PAJ_RS19005 7089c7073451924af937c0e30620c2e3 197 Pfam PF07081 Protein of unknown function (DUF1349) 14 187 3.3E-66 T 14-09-2016 IPR009784 Protein of unknown function DUF1349 PAJ_RS19005 7089c7073451924af937c0e30620c2e3 197 PIRSF PIRSF022704 2 197 1.9E-69 T 14-09-2016 IPR015987 Uncharacterised conserved protein UCP022704 PAJ_RS19810 efdcf7b3e0bdc88b91dc410331bbaadd 419 Gene3D G3DSA:3.65.10.10 21 219 7.4E-68 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PAJ_RS19810 efdcf7b3e0bdc88b91dc410331bbaadd 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 5.5E-184 T 14-09-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS19810 efdcf7b3e0bdc88b91dc410331bbaadd 419 PANTHER PTHR21090 1 419 3.2E-223 T 14-09-2016 PAJ_RS19810 efdcf7b3e0bdc88b91dc410331bbaadd 419 Gene3D G3DSA:3.65.10.10 220 416 2.6E-64 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PAJ_RS19810 efdcf7b3e0bdc88b91dc410331bbaadd 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 46.873 T 14-09-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS19810 efdcf7b3e0bdc88b91dc410331bbaadd 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 406 1.9E-128 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PAJ_RS19810 efdcf7b3e0bdc88b91dc410331bbaadd 419 SUPERFAMILY SSF55205 1 418 3.92E-148 T 14-09-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 Pfam PF01494 FAD binding domain 2 337 1.7E-24 T 14-09-2016 IPR002938 FAD-binding domain GO:0071949 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3 388 1.1E-143 T 14-09-2016 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 KEGG: 00130+1.14.13.-|KEGG: 00140+1.14.13.-|KEGG: 00232+1.14.13.-|KEGG: 00261+1.14.13.-|KEGG: 00340+1.14.13.-|KEGG: 00360+1.14.13.-|KEGG: 00361+1.14.13.-|KEGG: 00362+1.14.13.-|KEGG: 00363+1.14.13.-|KEGG: 00380+1.14.13.-|KEGG: 00403+1.14.13.-|KEGG: 00590+1.14.13.-|KEGG: 00591+1.14.13.-|KEGG: 00622+1.14.13.-|KEGG: 00623+1.14.13.-|KEGG: 00624+1.14.13.-|KEGG: 00625+1.14.13.-|KEGG: 00626+1.14.13.-|KEGG: 00627+1.14.13.-|KEGG: 00640+1.14.13.-|KEGG: 00643+1.14.13.-|KEGG: 00830+1.14.13.-|KEGG: 00903+1.14.13.-|KEGG: 00904+1.14.13.-|KEGG: 00905+1.14.13.-|KEGG: 00906+1.14.13.-|KEGG: 00930+1.14.13.-|KEGG: 00940+1.14.13.-|KEGG: 00941+1.14.13.-|KEGG: 00943+1.14.13.-|KEGG: 00945+1.14.13.-|KEGG: 00950+1.14.13.-|KEGG: 00966+1.14.13.-|KEGG: 00980+1.14.13.-|KEGG: 00982+1.14.13.-|KEGG: 00983+1.14.13.-|UniPathway: UPA00232 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 5.7E-13 T 14-09-2016 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 5.7E-13 T 14-09-2016 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 5.7E-13 T 14-09-2016 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 5.7E-13 T 14-09-2016 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 292 305 - T 14-09-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 Gene3D G3DSA:3.50.50.60 2 180 3.4E-38 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 Gene3D G3DSA:3.50.50.60 266 355 3.4E-38 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 SUPERFAMILY SSF51905 265 382 9.26E-57 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 SUPERFAMILY SSF51905 2 175 9.26E-57 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 PANTHER PTHR13789:SF214 1 392 3.1E-186 T 14-09-2016 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 PANTHER PTHR13789 1 392 3.1E-186 T 14-09-2016 PAJ_RS13330 d0b35394428264aacb99863e29473605 392 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 3 387 3.3E-133 T 14-09-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 Pfam PF13377 Periplasmic binding protein-like domain 170 326 1.5E-37 T 14-09-2016 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 Gene3D G3DSA:1.10.260.40 6 66 1.0E-26 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 Gene3D G3DSA:3.40.50.2300 67 173 1.7E-28 T 14-09-2016 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 PANTHER PTHR30146:SF34 4 352 1.3E-128 T 14-09-2016 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 PANTHER PTHR30146 4 352 1.3E-128 T 14-09-2016 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 Gene3D G3DSA:3.40.50.2300 174 327 3.5E-53 T 14-09-2016 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 SUPERFAMILY SSF53822 63 316 4.04E-56 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 5.1E-22 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 2.2E-5 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 2.2E-5 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 SUPERFAMILY SSF47413 5 63 7.64E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS09700 6877943d17cd5cecb1f2a961afe08f3e 352 SMART SM00354 5 75 4.9E-33 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS03985 d1394d685030404f4b6d8b887e375eef 182 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 179 9.1E-60 T 14-09-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PAJ_RS03985 d1394d685030404f4b6d8b887e375eef 182 PANTHER PTHR14269:SF13 2 179 1.9E-99 T 14-09-2016 PAJ_RS03985 d1394d685030404f4b6d8b887e375eef 182 PIRSF PIRSF000847 1 178 3.4E-41 T 14-09-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PAJ_RS03985 d1394d685030404f4b6d8b887e375eef 182 Hamap MF_01437 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [pgsA]. 1 182 33.691 T 14-09-2016 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PAJ_RS03985 d1394d685030404f4b6d8b887e375eef 182 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 14-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 PAJ_RS03985 d1394d685030404f4b6d8b887e375eef 182 PANTHER PTHR14269 2 179 1.9E-99 T 14-09-2016 PAJ_RS03985 d1394d685030404f4b6d8b887e375eef 182 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 3.5E-17 T 14-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 PANTHER PTHR21071:SF6 6 340 5.3E-170 T 14-09-2016 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 Gene3D G3DSA:3.90.78.10 233 344 1.7E-44 T 14-09-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 Gene3D G3DSA:3.30.43.10 6 70 2.7E-20 T 14-09-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 PANTHER PTHR21071 6 340 5.3E-170 T 14-09-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 345 84.371 T 14-09-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 12 332 8.4E-107 T 14-09-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 209 332 4.1E-34 T 14-09-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 Gene3D G3DSA:3.30.465.10 78 232 3.0E-53 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 SUPERFAMILY SSF56176 8 200 7.94E-45 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 SUPERFAMILY SSF56194 206 342 4.97E-50 T 14-09-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS18615 112ecb248e946a60f12ba39c3f64c746 345 Pfam PF01565 FAD binding domain 24 152 2.4E-22 T 14-09-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 PAJ_RS15665 0063f18f2d88f915a1c2b0230e388b9b 272 PANTHER PTHR21089 1 270 1.1E-137 T 14-09-2016 PAJ_RS15665 0063f18f2d88f915a1c2b0230e388b9b 272 PANTHER PTHR21089:SF2 1 270 1.1E-137 T 14-09-2016 PAJ_RS15665 0063f18f2d88f915a1c2b0230e388b9b 272 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 120 190 4.5E-7 T 14-09-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PAJ_RS15665 0063f18f2d88f915a1c2b0230e388b9b 272 Gene3D G3DSA:3.40.50.720 108 244 2.1E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15665 0063f18f2d88f915a1c2b0230e388b9b 272 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 269 32.209 T 14-09-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS15665 0063f18f2d88f915a1c2b0230e388b9b 272 Gene3D G3DSA:3.40.192.10 2 107 2.4E-39 T 14-09-2016 PAJ_RS15665 0063f18f2d88f915a1c2b0230e388b9b 272 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 270 2.0E-93 T 14-09-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS15665 0063f18f2d88f915a1c2b0230e388b9b 272 SUPERFAMILY SSF53223 2 101 2.01E-31 T 14-09-2016 PAJ_RS15665 0063f18f2d88f915a1c2b0230e388b9b 272 SUPERFAMILY SSF51735 102 264 4.16E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15665 0063f18f2d88f915a1c2b0230e388b9b 272 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 88 3.9E-26 T 14-09-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS15520 4126dd7c337064b428b69472fcd94345 481 PANTHER PTHR30624 9 481 5.1E-252 T 14-09-2016 PAJ_RS15520 4126dd7c337064b428b69472fcd94345 481 SUPERFAMILY SSF111283 19 480 9.29E-128 T 14-09-2016 PAJ_RS15520 4126dd7c337064b428b69472fcd94345 481 PANTHER PTHR30624:SF4 9 481 5.1E-252 T 14-09-2016 PAJ_RS15520 4126dd7c337064b428b69472fcd94345 481 PIRSF PIRSF004919 14 481 4.3E-145 T 14-09-2016 IPR025502 TldD KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS15520 4126dd7c337064b428b69472fcd94345 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 2.3E-63 T 14-09-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 SUPERFAMILY SSF52016 136 344 1.79E-70 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 ProSitePatterns PS01244 Aconitase family signature 2. 735 748 - T 14-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 PANTHER PTHR11670:SF39 279 834 0.0 T 14-09-2016 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 ProSitePatterns PS00450 Aconitase family signature 1. 676 693 - T 14-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 PANTHER PTHR11670 279 834 0.0 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 Gene3D G3DSA:3.30.499.10 658 833 6.8E-55 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 Pfam PF11791 Aconitate B N-terminal domain 2 130 4.4E-55 T 14-09-2016 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 Gene3D G3DSA:3.40.1060.10 494 656 8.8E-88 T 14-09-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 Gene3D G3DSA:3.20.19.10 136 334 8.3E-94 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 PIRSF PIRSF036687 1 833 0.0 T 14-09-2016 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 SUPERFAMILY SSF74778 2 134 7.19E-56 T 14-09-2016 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 SUPERFAMILY SSF53732 354 833 4.32E-150 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 Pfam PF06434 Aconitate hydratase 2 N-terminus 142 356 9.0E-96 T 14-09-2016 IPR015929 Aconitase B, N-terminal GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 828 0.0 T 14-09-2016 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 Gene3D G3DSA:3.30.499.10 377 493 3.4E-64 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00470 e798d67e6de6a135d020a64e10c9bcdf 839 Pfam PF00330 Aconitase family (aconitate hydratase) 446 792 6.6E-39 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 SMART SM00564 732 765 8.8E-5 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 SMART SM00564 423 473 54.0 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 SMART SM00564 354 395 9.9 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 SMART SM00564 496 528 860.0 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 SMART SM00564 665 704 280.0 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 SMART SM00564 225 256 0.32 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 PANTHER PTHR32303:SF4 134 523 5.8E-145 T 14-09-2016 PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 Gene3D G3DSA:2.140.10.10 160 549 3.2E-140 T 14-09-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 Gene3D G3DSA:2.140.10.10 585 811 3.2E-140 T 14-09-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 PANTHER PTHR32303 593 811 5.8E-145 T 14-09-2016 PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 419 440 - T 14-09-2016 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 SUPERFAMILY SSF50998 574 796 8.9E-146 T 14-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 SUPERFAMILY SSF50998 167 537 8.9E-146 T 14-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 18 810 0.0 T 14-09-2016 IPR017511 PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related GO:0016021|GO:0016614|GO:0048038|GO:0055114 PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 PANTHER PTHR32303:SF4 593 811 5.8E-145 T 14-09-2016 PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 Pfam PF01011 PQQ enzyme repeat 230 259 8.0E-5 T 14-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 Pfam PF01011 PQQ enzyme repeat 455 483 5.0E-8 T 14-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 Pfam PF01011 PQQ enzyme repeat 738 775 8.4E-7 T 14-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat PAJ_RS11835 f3e4669a89f2b873b12eaa5373136dd2 813 PANTHER PTHR32303 134 523 5.8E-145 T 14-09-2016 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 PRINTS PR00412 Epoxide hydrolase signature 247 269 8.8E-9 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 PRINTS PR00412 Epoxide hydrolase signature 27 45 8.8E-9 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 PRINTS PR00412 Epoxide hydrolase signature 106 119 8.8E-9 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 PRINTS PR00412 Epoxide hydrolase signature 47 62 8.8E-9 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 PRINTS PR00412 Epoxide hydrolase signature 213 229 8.8E-9 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 1.8E-11 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 215 229 1.8E-11 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 1.8E-11 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 Pfam PF00561 alpha/beta hydrolase fold 22 252 1.6E-29 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 PANTHER PTHR10992 5 272 1.0E-103 T 14-09-2016 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 SUPERFAMILY SSF53474 5 271 2.3E-66 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 PANTHER PTHR10992:SF859 5 272 1.0E-103 T 14-09-2016 PAJ_RS13670 12acba66e01d49bac9e5a3986e9ad71f 272 Gene3D G3DSA:3.40.50.1820 4 271 3.8E-71 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS14430 446cbecc731acffea09e1324558d0865 229 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 14-09-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 PAJ_RS14430 446cbecc731acffea09e1324558d0865 229 SMART SM00882 6 219 5.7E-80 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PAJ_RS14430 446cbecc731acffea09e1324558d0865 229 Gene3D G3DSA:3.40.1080.10 4 217 1.6E-85 T 14-09-2016 PAJ_RS14430 446cbecc731acffea09e1324558d0865 229 PANTHER PTHR13707 1 221 4.9E-92 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PAJ_RS14430 446cbecc731acffea09e1324558d0865 229 SUPERFAMILY SSF100950 2 223 1.33E-77 T 14-09-2016 PAJ_RS14430 446cbecc731acffea09e1324558d0865 229 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 221 1.1E-114 T 14-09-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 PAJ_RS14430 446cbecc731acffea09e1324558d0865 229 Pfam PF01144 Coenzyme A transferase 7 218 4.1E-68 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 Pfam PF00270 DEAD/DEAH box helicase 25 197 2.8E-51 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 PANTHER PTHR24031 1 425 4.2E-193 T 14-09-2016 PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 Gene3D G3DSA:3.40.50.300 1 212 2.4E-82 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 PANTHER PTHR24031:SF0 1 425 4.2E-193 T 14-09-2016 PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 SMART SM00490 259 340 4.3E-30 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 Pfam PF00271 Helicase conserved C-terminal domain 234 339 8.1E-25 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 Gene3D G3DSA:3.40.50.300 213 370 1.4E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 446 51.573 T 14-09-2016 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 SMART SM00487 20 223 2.3E-60 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 14-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PAJ_RS03040 edc334450230134631b8d5e17c11c181 449 SUPERFAMILY SSF52540 75 361 3.28E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08370 bd8350156f1146c814d7f0c275bbee39 261 PANTHER PTHR30477:SF0 9 259 5.3E-88 T 14-09-2016 PAJ_RS08370 bd8350156f1146c814d7f0c275bbee39 261 SUPERFAMILY SSF81345 3 257 7.59E-42 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS08370 bd8350156f1146c814d7f0c275bbee39 261 PANTHER PTHR30477 9 259 5.3E-88 T 14-09-2016 PAJ_RS08370 bd8350156f1146c814d7f0c275bbee39 261 Gene3D G3DSA:1.10.3470.10 59 258 3.2E-13 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS08370 bd8350156f1146c814d7f0c275bbee39 261 Pfam PF00950 ABC 3 transport family 2 257 1.7E-85 T 14-09-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 PAJ_RS20150 46066b0fc6f9ea994765ca11c71440e7 340 Pfam PF13377 Periplasmic binding protein-like domain 177 336 3.3E-38 T 14-09-2016 PAJ_RS20150 46066b0fc6f9ea994765ca11c71440e7 340 SUPERFAMILY SSF53822 69 338 4.71E-77 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS20150 46066b0fc6f9ea994765ca11c71440e7 340 Gene3D G3DSA:3.40.50.2300 182 318 7.5E-51 T 14-09-2016 PAJ_RS20150 46066b0fc6f9ea994765ca11c71440e7 340 Gene3D G3DSA:3.40.50.2300 62 181 7.3E-42 T 14-09-2016 PAJ_RS20150 46066b0fc6f9ea994765ca11c71440e7 340 SUPERFAMILY SSF47413 9 67 8.89E-13 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS20150 46066b0fc6f9ea994765ca11c71440e7 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 56 6.6E-12 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS20150 46066b0fc6f9ea994765ca11c71440e7 340 Gene3D G3DSA:1.10.260.40 12 61 3.3E-17 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS20150 46066b0fc6f9ea994765ca11c71440e7 340 PANTHER PTHR30146 9 339 7.3E-108 T 14-09-2016 PAJ_RS20150 46066b0fc6f9ea994765ca11c71440e7 340 SMART SM00354 9 79 1.2E-20 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS08270 1232789f3c63bfed6ef029a3941bb168 540 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 60 358 7.8E-88 T 14-09-2016 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 PAJ_RS08270 1232789f3c63bfed6ef029a3941bb168 540 Gene3D G3DSA:3.30.1360.60 449 525 3.6E-23 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS08270 1232789f3c63bfed6ef029a3941bb168 540 PANTHER PTHR30009:SF12 2 535 9.9E-264 T 14-09-2016 PAJ_RS08270 1232789f3c63bfed6ef029a3941bb168 540 PANTHER PTHR30009 2 535 9.9E-264 T 14-09-2016 PAJ_RS08270 1232789f3c63bfed6ef029a3941bb168 540 TIGRFAM TIGR02005 PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component 2 523 3.9E-258 T 14-09-2016 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component GO:0008982|GO:0009401 PAJ_RS08270 1232789f3c63bfed6ef029a3941bb168 540 Pfam PF02378 Phosphotransferase system, EIIC 10 346 3.2E-69 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS08270 1232789f3c63bfed6ef029a3941bb168 540 SUPERFAMILY SSF55604 450 524 8.76E-18 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS08270 1232789f3c63bfed6ef029a3941bb168 540 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 409 510 2.6E-22 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS08270 1232789f3c63bfed6ef029a3941bb168 540 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 463 480 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS08270 1232789f3c63bfed6ef029a3941bb168 540 Pfam PF00367 phosphotransferase system, EIIB 455 483 2.6E-11 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS20665 29474e60a289a9f47af8c72502381035 184 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 165 6.4E-9 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PAJ_RS20665 29474e60a289a9f47af8c72502381035 184 Gene3D G3DSA:3.40.50.1240 1 168 5.4E-12 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS20665 29474e60a289a9f47af8c72502381035 184 SUPERFAMILY SSF53254 1 166 4.5E-16 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS06115 2da6f6b64752fd04f443dfa47837d353 420 PANTHER PTHR11076:SF40 1 379 2.3E-184 T 14-09-2016 PAJ_RS06115 2da6f6b64752fd04f443dfa47837d353 420 Gene3D G3DSA:1.10.150.20 168 238 1.0E-20 T 14-09-2016 PAJ_RS06115 2da6f6b64752fd04f443dfa47837d353 420 PANTHER PTHR11076 1 379 2.3E-184 T 14-09-2016 PAJ_RS06115 2da6f6b64752fd04f443dfa47837d353 420 Pfam PF00817 impB/mucB/samB family 5 150 7.6E-38 T 14-09-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS06115 2da6f6b64752fd04f443dfa47837d353 420 SUPERFAMILY SSF100879 246 338 4.91E-7 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS06115 2da6f6b64752fd04f443dfa47837d353 420 SUPERFAMILY SSF56672 1 236 3.47E-71 T 14-09-2016 PAJ_RS06115 2da6f6b64752fd04f443dfa47837d353 420 Gene3D G3DSA:3.30.70.270 67 157 3.4E-25 T 14-09-2016 PAJ_RS06115 2da6f6b64752fd04f443dfa47837d353 420 Pfam PF13438 Domain of unknown function (DUF4113) 371 419 2.1E-19 T 14-09-2016 IPR025188 Domain of unknown function DUF4113 PAJ_RS06115 2da6f6b64752fd04f443dfa47837d353 420 Gene3D G3DSA:3.30.1490.100 246 351 1.1E-6 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS06115 2da6f6b64752fd04f443dfa47837d353 420 Pfam PF11799 impB/mucB/samB family C-terminal domain 241 351 1.2E-12 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS07065 41fe80ed2b913ede56044ff15ad99a94 376 SUPERFAMILY SSF51419 18 236 1.02E-33 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS07065 41fe80ed2b913ede56044ff15ad99a94 376 Pfam PF14031 Putative serine dehydratase domain 255 359 1.2E-20 T 14-09-2016 IPR026956 D-serine dehydratase-like domain PAJ_RS07065 41fe80ed2b913ede56044ff15ad99a94 376 PANTHER PTHR28004:SF2 6 376 7.9E-81 T 14-09-2016 PAJ_RS07065 41fe80ed2b913ede56044ff15ad99a94 376 PANTHER PTHR28004 6 376 7.9E-81 T 14-09-2016 PAJ_RS07065 41fe80ed2b913ede56044ff15ad99a94 376 Pfam PF01168 Alanine racemase, N-terminal domain 15 237 7.0E-32 T 14-09-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07065 41fe80ed2b913ede56044ff15ad99a94 376 SMART SM01119 255 361 2.9E-36 T 14-09-2016 IPR026956 D-serine dehydratase-like domain PAJ_RS07065 41fe80ed2b913ede56044ff15ad99a94 376 Gene3D G3DSA:3.20.20.10 19 235 4.6E-23 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS19255 0f7428cb0e874a06e383408408e9ba6d 356 SMART SM01329 7 352 4.6E-184 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS19255 0f7428cb0e874a06e383408408e9ba6d 356 PANTHER PTHR11835:SF37 1 356 1.8E-221 T 14-09-2016 PAJ_RS19255 0f7428cb0e874a06e383408408e9ba6d 356 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 4 356 7.8E-172 T 14-09-2016 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 PAJ_RS19255 0f7428cb0e874a06e383408408e9ba6d 356 SUPERFAMILY SSF53659 4 356 1.92E-119 T 14-09-2016 PAJ_RS19255 0f7428cb0e874a06e383408408e9ba6d 356 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 245 264 - T 14-09-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PAJ_RS19255 0f7428cb0e874a06e383408408e9ba6d 356 PANTHER PTHR11835 1 356 1.8E-221 T 14-09-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PAJ_RS19255 0f7428cb0e874a06e383408408e9ba6d 356 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 8 351 3.1E-88 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS19255 0f7428cb0e874a06e383408408e9ba6d 356 Gene3D G3DSA:3.40.718.10 6 346 4.2E-120 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS02715 adffd1c6389b796a41c5712e431ff90d 115 PANTHER PTHR38689:SF1 2 115 1.1E-56 T 14-09-2016 PAJ_RS02715 adffd1c6389b796a41c5712e431ff90d 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 3.1E-35 T 14-09-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 PAJ_RS02715 adffd1c6389b796a41c5712e431ff90d 115 PIRSF PIRSF000169 1 115 7.8E-41 T 14-09-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 PAJ_RS02715 adffd1c6389b796a41c5712e431ff90d 115 SUPERFAMILY SSF81343 5 115 1.37E-28 T 14-09-2016 PAJ_RS02715 adffd1c6389b796a41c5712e431ff90d 115 Gene3D G3DSA:1.20.1300.10 1 115 3.3E-39 T 14-09-2016 PAJ_RS02715 adffd1c6389b796a41c5712e431ff90d 115 PANTHER PTHR38689 2 115 1.1E-56 T 14-09-2016 PAJ_RS05895 481a9cb3277ae02fbc2bec2164857636 78 SUPERFAMILY SSF58042 24 73 8.63E-23 T 14-09-2016 PAJ_RS05895 481a9cb3277ae02fbc2bec2164857636 78 Gene3D G3DSA:1.20.5.190 22 73 1.6E-24 T 14-09-2016 PAJ_RS05895 481a9cb3277ae02fbc2bec2164857636 78 PIRSF PIRSF002855 1 78 3.4E-30 T 14-09-2016 IPR016367 Murein-lipoprotein PAJ_RS05895 481a9cb3277ae02fbc2bec2164857636 78 Pfam PF04728 Lipoprotein leucine-zipper 26 78 2.1E-25 T 14-09-2016 IPR006817 Lipoprotein leucine-zipper GO:0019867 PAJ_RS05895 481a9cb3277ae02fbc2bec2164857636 78 PANTHER PTHR38763 1 78 4.5E-29 T 14-09-2016 PAJ_RS16765 3f14375bf25861aaf119e79ce763434e 278 SUPERFAMILY SSF56529 63 277 4.45E-65 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PAJ_RS16765 3f14375bf25861aaf119e79ce763434e 278 PANTHER PTHR11820:SF6 1 277 1.9E-89 T 14-09-2016 PAJ_RS16765 3f14375bf25861aaf119e79ce763434e 278 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 76 278 4.3E-56 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PAJ_RS16765 3f14375bf25861aaf119e79ce763434e 278 PANTHER PTHR11820 1 277 1.9E-89 T 14-09-2016 PAJ_RS16765 3f14375bf25861aaf119e79ce763434e 278 Gene3D G3DSA:3.90.850.10 63 277 3.0E-66 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PRINTS PR01836 Magnesium-transporting ATPase signature 406 419 7.6E-84 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PRINTS PR01836 Magnesium-transporting ATPase signature 302 321 7.6E-84 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PRINTS PR01836 Magnesium-transporting ATPase signature 716 727 7.6E-84 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PRINTS PR01836 Magnesium-transporting ATPase signature 853 874 7.6E-84 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PRINTS PR01836 Magnesium-transporting ATPase signature 698 713 7.6E-84 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PRINTS PR01836 Magnesium-transporting ATPase signature 748 761 7.6E-84 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PRINTS PR01836 Magnesium-transporting ATPase signature 768 784 7.6E-84 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PRINTS PR01836 Magnesium-transporting ATPase signature 285 301 7.6E-84 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PRINTS PR01836 Magnesium-transporting ATPase signature 803 824 7.6E-84 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 Pfam PF00690 Cation transporter/ATPase, N-terminus 37 98 1.2E-14 T 14-09-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 Gene3D G3DSA:3.40.1110.10 364 547 6.0E-30 T 14-09-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 SUPERFAMILY SSF56784 370 390 4.53E-38 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 SUPERFAMILY SSF56784 497 740 4.53E-38 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PANTHER PTHR24093:SF128 28 899 0.0 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 374 380 - T 14-09-2016 IPR018303 P-type ATPase, phosphorylation site PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 Gene3D G3DSA:2.70.150.10 48 82 4.4E-36 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 Gene3D G3DSA:2.70.150.10 147 273 4.4E-36 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 PANTHER PTHR24093 28 899 0.0 T 14-09-2016 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 Pfam PF00689 Cation transporting ATPase, C-terminus 723 891 8.3E-16 T 14-09-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 Pfam PF00122 E1-E2 ATPase 120 363 1.2E-56 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 610 729 5.6E-29 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 269 398 2.4E-20 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 Gene3D G3DSA:1.20.1110.10 83 146 1.5E-68 T 14-09-2016 IPR023298 P-type ATPase, transmembrane domain PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 Gene3D G3DSA:1.20.1110.10 609 892 1.5E-68 T 14-09-2016 IPR023298 P-type ATPase, transmembrane domain PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 Pfam PF00702 haloacid dehalogenase-like hydrolase 368 654 3.5E-21 T 14-09-2016 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 SUPERFAMILY SSF81665 273 366 3.14E-99 T 14-09-2016 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 SUPERFAMILY SSF81665 689 897 3.14E-99 T 14-09-2016 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 SUPERFAMILY SSF81665 37 152 3.14E-99 T 14-09-2016 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 SUPERFAMILY SSF81653 168 271 1.7E-23 T 14-09-2016 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 31 899 0.0 T 14-09-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PAJ_RS12440 024c1366daa78b4d131a756ea3d08a1e 900 SMART SM00831 30 103 1.0E-17 T 14-09-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal PAJ_RS20020 84c2583304fb29c5b4745a1e0be6a0c3 407 SUPERFAMILY SSF111369 81 317 6.8E-55 T 14-09-2016 PAJ_RS20020 84c2583304fb29c5b4745a1e0be6a0c3 407 PANTHER PTHR30469 69 405 2.5E-134 T 14-09-2016 PAJ_RS20020 84c2583304fb29c5b4745a1e0be6a0c3 407 Gene3D G3DSA:2.40.50.100 198 233 4.7E-24 T 14-09-2016 PAJ_RS20020 84c2583304fb29c5b4745a1e0be6a0c3 407 Gene3D G3DSA:2.40.50.100 90 123 4.7E-24 T 14-09-2016 PAJ_RS20020 84c2583304fb29c5b4745a1e0be6a0c3 407 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 90 312 4.3E-15 T 14-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PAJ_RS20020 84c2583304fb29c5b4745a1e0be6a0c3 407 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 69 394 4.2E-73 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS20020 84c2583304fb29c5b4745a1e0be6a0c3 407 PANTHER PTHR30469:SF12 69 405 2.5E-134 T 14-09-2016 IPR022824 Multidrug resistance protein MdtA PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 30 147 6.4E-35 T 14-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 Gene3D G3DSA:2.60.40.1070 156 240 1.7E-21 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 SUPERFAMILY SSF49354 30 147 1.48E-37 T 14-09-2016 IPR008962 PapD-like PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 PRINTS PR00969 Pili chaperone signature 30 39 1.1E-31 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 PRINTS PR00969 Pili chaperone signature 76 97 1.1E-31 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 PRINTS PR00969 Pili chaperone signature 106 123 1.1E-31 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 PRINTS PR00969 Pili chaperone signature 165 180 1.1E-31 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 PRINTS PR00969 Pili chaperone signature 129 144 1.1E-31 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 SUPERFAMILY SSF49584 157 241 1.03E-18 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 PANTHER PTHR30251:SF6 1 237 1.2E-84 T 14-09-2016 PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 Gene3D G3DSA:2.60.40.360 30 147 1.0E-41 T 14-09-2016 IPR008962 PapD-like PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 PANTHER PTHR30251 1 237 1.2E-84 T 14-09-2016 PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 170 227 7.8E-12 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS11085 1bd2c49f44b43575b8bd752b53e25f17 249 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 105 122 - T 14-09-2016 IPR018046 Pili assembly chaperone, conserved site PAJ_RS13005 d6791487a3f3a65cdd91de348c8b233a 379 PANTHER PTHR21599 1 375 3.7E-242 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 PAJ_RS13005 d6791487a3f3a65cdd91de348c8b233a 379 Gene3D G3DSA:3.90.1510.10 42 275 2.3E-100 T 14-09-2016 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 PAJ_RS13005 d6791487a3f3a65cdd91de348c8b233a 379 Pfam PF02595 Glycerate kinase family 3 373 2.5E-152 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 PAJ_RS13005 d6791487a3f3a65cdd91de348c8b233a 379 PANTHER PTHR21599:SF4 1 375 3.7E-242 T 14-09-2016 PAJ_RS13005 d6791487a3f3a65cdd91de348c8b233a 379 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 4.0E-168 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 PAJ_RS13005 d6791487a3f3a65cdd91de348c8b233a 379 PIRSF PIRSF006078 1 377 1.4E-139 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 PAJ_RS13005 d6791487a3f3a65cdd91de348c8b233a 379 SUPERFAMILY SSF110738 1 375 6.54E-144 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 PAJ_RS09615 49d8f27e9245ee5149988413be8590c4 373 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 130 8.1E-24 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 PAJ_RS09615 49d8f27e9245ee5149988413be8590c4 373 Gene3D G3DSA:3.30.360.10 325 373 2.1E-45 T 14-09-2016 PAJ_RS09615 49d8f27e9245ee5149988413be8590c4 373 Gene3D G3DSA:3.30.360.10 150 277 2.1E-45 T 14-09-2016 PAJ_RS09615 49d8f27e9245ee5149988413be8590c4 373 SUPERFAMILY SSF55347 135 308 1.8E-36 T 14-09-2016 PAJ_RS09615 49d8f27e9245ee5149988413be8590c4 373 PANTHER PTHR22604:SF123 1 373 1.1E-90 T 14-09-2016 PAJ_RS09615 49d8f27e9245ee5149988413be8590c4 373 Gene3D G3DSA:3.40.50.720 1 149 1.1E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09615 49d8f27e9245ee5149988413be8590c4 373 PANTHER PTHR22604 1 373 1.1E-90 T 14-09-2016 PAJ_RS09615 49d8f27e9245ee5149988413be8590c4 373 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 263 3.7E-9 T 14-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 PAJ_RS09615 49d8f27e9245ee5149988413be8590c4 373 SUPERFAMILY SSF51735 3 158 5.27E-47 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PANTHER PTHR24322 153 185 5.8E-48 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PANTHER PTHR24322 7 137 5.8E-48 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 TIGRFAM TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase 5 243 1.2E-138 T 14-09-2016 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PANTHER PTHR24322:SF635 7 137 5.8E-48 T 14-09-2016 PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 Gene3D G3DSA:3.40.50.720 3 242 8.3E-72 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 5.0E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 5.0E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 5.0E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 5.0E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.0E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 5.0E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.5E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.5E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.5E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 SUPERFAMILY SSF51735 3 242 8.36E-72 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 242 4.2E-56 T 14-09-2016 PAJ_RS20475 8a8c77742162d3b23579636c01fd914f 243 PANTHER PTHR24322:SF635 153 185 5.8E-48 T 14-09-2016 PAJ_RS10810 717dbd5b5ce1ff286cf4b85862c130a6 336 Gene3D G3DSA:3.30.360.10 145 313 8.4E-47 T 14-09-2016 PAJ_RS10810 717dbd5b5ce1ff286cf4b85862c130a6 336 PANTHER PTHR10174 45 336 1.2E-48 T 14-09-2016 PAJ_RS10810 717dbd5b5ce1ff286cf4b85862c130a6 336 Gene3D G3DSA:3.40.50.720 1 144 8.3E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10810 717dbd5b5ce1ff286cf4b85862c130a6 336 PIRSF PIRSF000148 4 336 2.1E-86 T 14-09-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS10810 717dbd5b5ce1ff286cf4b85862c130a6 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 316 1.8E-30 T 14-09-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS10810 717dbd5b5ce1ff286cf4b85862c130a6 336 SUPERFAMILY SSF55347 134 318 1.27E-45 T 14-09-2016 PAJ_RS10810 717dbd5b5ce1ff286cf4b85862c130a6 336 PANTHER PTHR10174:SF2 45 336 1.2E-48 T 14-09-2016 PAJ_RS10810 717dbd5b5ce1ff286cf4b85862c130a6 336 SUPERFAMILY SSF51735 5 157 1.87E-38 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10810 717dbd5b5ce1ff286cf4b85862c130a6 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 119 1.3E-21 T 14-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PAJ_RS10810 717dbd5b5ce1ff286cf4b85862c130a6 336 SMART SM00859 6 121 9.2E-25 T 14-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 Gene3D G3DSA:3.90.226.10 4 203 4.4E-61 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 488 513 - T 14-09-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 SUPERFAMILY SSF48179 611 703 3.57E-25 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 203 1.6E-38 T 14-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 310 488 2.1E-58 T 14-09-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 PANTHER PTHR23309:SF6 6 704 0.0 T 14-09-2016 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 SUPERFAMILY SSF48179 490 590 1.36E-29 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 Gene3D G3DSA:1.10.1040.10 621 703 5.3E-22 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 5 703 0.0 T 14-09-2016 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 SUPERFAMILY SSF52096 1 300 1.06E-66 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 PANTHER PTHR23309 6 704 0.0 T 14-09-2016 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 SUPERFAMILY SSF51735 307 490 1.06E-50 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 Gene3D G3DSA:1.10.1040.10 493 584 1.5E-28 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 491 584 8.1E-26 T 14-09-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 615 698 2.0E-4 T 14-09-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS10920 800840b6006b834e74aa3c7d3c2638ab 706 Gene3D G3DSA:3.40.50.720 303 492 1.5E-55 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 Pfam PF00571 CBS domain 349 392 8.3E-6 T 14-09-2016 IPR000644 CBS domain PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 Gene3D G3DSA:3.10.580.10 273 394 1.2E-19 T 14-09-2016 PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 SMART SM00382 53 242 7.0E-19 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 SUPERFAMILY SSF52540 43 271 2.66E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 Pfam PF00005 ABC transporter 44 192 7.6E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 PANTHER PTHR24220 6 16 9.3E-165 T 14-09-2016 PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 PANTHER PTHR24220 41 292 9.3E-165 T 14-09-2016 PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 PANTHER PTHR24220:SF374 6 16 9.3E-165 T 14-09-2016 PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 PANTHER PTHR24220:SF374 41 292 9.3E-165 T 14-09-2016 PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 Gene3D G3DSA:3.40.50.300 5 264 8.1E-78 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 SUPERFAMILY SSF54631 292 393 6.06E-11 T 14-09-2016 PAJ_RS12520 1ec070d87729004e86e991e20dc37e3f 399 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 36 393 1.3E-172 T 14-09-2016 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 142 2.6E-65 T 14-09-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.435 T 14-09-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 SUPERFAMILY SSF46906 68 141 1.83E-26 T 14-09-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 SUPERFAMILY SSF54747 3 73 1.57E-29 T 14-09-2016 IPR020784 Ribosomal protein L11, N-terminal PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 PANTHER PTHR11661 1 142 1.5E-74 T 14-09-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 1.0E-28 T 14-09-2016 IPR020784 Ribosomal protein L11, N-terminal PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 6.0E-25 T 14-09-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-16 T 14-09-2016 PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 Gene3D G3DSA:3.30.1550.10 2 72 3.7E-37 T 14-09-2016 IPR020784 Ribosomal protein L11, N-terminal PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 Gene3D G3DSA:1.10.10.250 73 141 1.6E-31 T 14-09-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 SMART SM00649 9 141 3.6E-84 T 14-09-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 PAJ_RS18665 30ed65b9b6e448b3a56aae04533e0b81 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 14-09-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 Gene3D G3DSA:3.90.800.10 69 180 8.8E-40 T 14-09-2016 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 3 461 34.119 T 14-09-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 PANTHER PTHR11451 2 314 1.0E-101 T 14-09-2016 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 Gene3D G3DSA:3.40.50.620 181 230 6.5E-53 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 Gene3D G3DSA:3.40.50.620 2 68 6.5E-53 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 2.7E-118 T 14-09-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 SUPERFAMILY SSF52374 3 298 5.9E-113 T 14-09-2016 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 SUPERFAMILY SSF48163 299 461 4.19E-45 T 14-09-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 1.7E-27 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.7E-27 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.7E-27 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.7E-27 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 1.7E-27 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 Gene3D G3DSA:1.10.1160.10 233 314 9.4E-36 T 14-09-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 PANTHER PTHR11451:SF41 2 314 1.0E-101 T 14-09-2016 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 463 1.2E-203 T 14-09-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 Gene3D G3DSA:1.10.10.350 363 462 7.5E-32 T 14-09-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 PAJ_RS11255 f695f76537f52915ba4083cc2680e7d6 472 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS03370 a20e56621b2b146298f78bc2d197ea79 149 Pfam PF14328 Domain of unknown function (DUF4385) 5 147 2.8E-67 T 14-09-2016 IPR025494 Protein of unknown function DUF4385 PAJ_RS16190 e9f2b46145fd74346c9f8698f5208384 690 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 98 683 8.3E-226 T 14-09-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 PAJ_RS16190 e9f2b46145fd74346c9f8698f5208384 690 SUPERFAMILY SSF51445 140 570 2.11E-144 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS16190 e9f2b46145fd74346c9f8698f5208384 690 SUPERFAMILY SSF51445 608 680 2.11E-144 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS16190 e9f2b46145fd74346c9f8698f5208384 690 PANTHER PTHR32438:SF5 580 689 1.4E-214 T 14-09-2016 PAJ_RS16190 e9f2b46145fd74346c9f8698f5208384 690 PANTHER PTHR32438:SF5 62 561 1.4E-214 T 14-09-2016 PAJ_RS16190 e9f2b46145fd74346c9f8698f5208384 690 PANTHER PTHR32438 580 689 1.4E-214 T 14-09-2016 PAJ_RS16190 e9f2b46145fd74346c9f8698f5208384 690 PANTHER PTHR32438 62 561 1.4E-214 T 14-09-2016 PAJ_RS16190 e9f2b46145fd74346c9f8698f5208384 690 Gene3D G3DSA:3.20.20.80 612 686 5.6E-161 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS16190 e9f2b46145fd74346c9f8698f5208384 690 Gene3D G3DSA:3.20.20.80 139 573 5.6E-161 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS16190 e9f2b46145fd74346c9f8698f5208384 690 Pfam PF02446 4-alpha-glucanotransferase 146 664 1.7E-131 T 14-09-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 PAJ_RS20615 dd7a0a10465fb7a3bfb486968343c766 465 PANTHER PTHR23508 10 454 1.4E-267 T 14-09-2016 PAJ_RS20615 dd7a0a10465fb7a3bfb486968343c766 465 Gene3D G3DSA:1.20.1250.20 246 433 1.1E-14 T 14-09-2016 PAJ_RS20615 dd7a0a10465fb7a3bfb486968343c766 465 Gene3D G3DSA:1.20.1250.20 24 222 3.4E-22 T 14-09-2016 PAJ_RS20615 dd7a0a10465fb7a3bfb486968343c766 465 Pfam PF07690 Major Facilitator Superfamily 57 362 1.4E-26 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS20615 dd7a0a10465fb7a3bfb486968343c766 465 SUPERFAMILY SSF103473 16 438 8.89E-55 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20615 dd7a0a10465fb7a3bfb486968343c766 465 PANTHER PTHR23508:SF6 10 454 1.4E-267 T 14-09-2016 PAJ_RS20615 dd7a0a10465fb7a3bfb486968343c766 465 ProSitePatterns PS00216 Sugar transport proteins signature 1. 303 320 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS03630 8ece0cf0b1e59d7a3e59636dee2f8711 226 SUPERFAMILY SSF52540 6 223 4.19E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03630 8ece0cf0b1e59d7a3e59636dee2f8711 226 Pfam PF02224 Cytidylate kinase 8 221 4.9E-83 T 14-09-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 PAJ_RS03630 8ece0cf0b1e59d7a3e59636dee2f8711 226 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 3.7E-94 T 14-09-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 PAJ_RS03630 8ece0cf0b1e59d7a3e59636dee2f8711 226 Gene3D G3DSA:3.40.50.300 6 221 8.0E-78 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03630 8ece0cf0b1e59d7a3e59636dee2f8711 226 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 34.478 T 14-09-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 PAJ_RS03630 8ece0cf0b1e59d7a3e59636dee2f8711 226 PANTHER PTHR21299 3 222 3.2E-87 T 14-09-2016 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 SUPERFAMILY SSF55681 8 292 8.7E-135 T 14-09-2016 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 PANTHER PTHR30075 1 300 2.9E-280 T 14-09-2016 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 Gene3D G3DSA:3.30.930.10 4 213 7.5E-107 T 14-09-2016 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 Gene3D G3DSA:1.20.58.180 215 298 5.3E-37 T 14-09-2016 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 300 2.3E-177 T 14-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 3.9E-71 T 14-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 3.9E-71 T 14-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 3.9E-71 T 14-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 3.9E-71 T 14-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 3.9E-71 T 14-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 3.9E-71 T 14-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 291 2.3E-150 T 14-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18015 52d36f0620957d13e5776c9d452145a0 303 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.926 T 14-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS03520 cad0392618d122380591cbd9a84473fc 299 Pfam PF03956 Membrane protein of unknown function (DUF340) 113 297 8.4E-57 T 14-09-2016 IPR005642 Lysine exporter LysO PAJ_RS03520 cad0392618d122380591cbd9a84473fc 299 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 135 295 4.0E-53 T 14-09-2016 IPR005642 Lysine exporter LysO PAJ_RS03520 cad0392618d122380591cbd9a84473fc 299 PANTHER PTHR35804 2 298 3.3E-91 T 14-09-2016 PAJ_RS03520 cad0392618d122380591cbd9a84473fc 299 PANTHER PTHR35804:SF1 2 298 3.3E-91 T 14-09-2016 PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 SUPERFAMILY SSF53383 114 471 9.47E-87 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 Pfam PF00155 Aminotransferase class I and II 144 418 1.4E-22 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 80 1.8E-16 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 SUPERFAMILY SSF46785 13 81 1.74E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 2.0E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 2.0E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 PANTHER PTHR11751 119 470 7.0E-104 T 14-09-2016 PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 Gene3D G3DSA:1.10.10.10 17 81 2.2E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 PANTHER PTHR11751:SF10 119 470 7.0E-104 T 14-09-2016 PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 Gene3D G3DSA:3.40.640.10 153 364 1.1E-54 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS10860 2a6e22de66ea815d6f43c28557384a12 479 SMART SM00345 21 80 8.5E-16 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS03910 97be948d34085d24634b28372f396dc8 551 ProSitePatterns PS00778 Histidine acid phosphatases active site signature. 312 328 - T 14-09-2016 IPR033379 Histidine acid phosphatase active site PAJ_RS03910 97be948d34085d24634b28372f396dc8 551 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 40 369 3.6E-17 T 14-09-2016 IPR000560 Histidine phosphatase superfamily, clade-2 GO:0003993 PAJ_RS03910 97be948d34085d24634b28372f396dc8 551 SUPERFAMILY SSF53254 33 418 1.05E-78 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS03910 97be948d34085d24634b28372f396dc8 551 Gene3D G3DSA:3.40.50.1240 33 147 4.0E-82 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS03910 97be948d34085d24634b28372f396dc8 551 Gene3D G3DSA:3.40.50.1240 282 420 4.0E-82 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS03910 97be948d34085d24634b28372f396dc8 551 PANTHER PTHR11567:SF135 28 447 5.7E-166 T 14-09-2016 PAJ_RS03910 97be948d34085d24634b28372f396dc8 551 PANTHER PTHR11567 28 447 5.7E-166 T 14-09-2016 PAJ_RS03910 97be948d34085d24634b28372f396dc8 551 Gene3D G3DSA:3.40.50.1240 148 280 6.2E-61 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS00940 1491073a39d2b648a44e604959fb0208 271 PANTHER PTHR18966:SF191 25 253 1.4E-18 T 14-09-2016 PAJ_RS00940 1491073a39d2b648a44e604959fb0208 271 Gene3D G3DSA:3.40.190.10 133 208 1.8E-6 T 14-09-2016 PAJ_RS00940 1491073a39d2b648a44e604959fb0208 271 PANTHER PTHR18966 25 253 1.4E-18 T 14-09-2016 PAJ_RS00940 1491073a39d2b648a44e604959fb0208 271 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 51 64 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS00940 1491073a39d2b648a44e604959fb0208 271 Gene3D G3DSA:3.40.190.10 18 132 4.9E-24 T 14-09-2016 PAJ_RS00940 1491073a39d2b648a44e604959fb0208 271 SUPERFAMILY SSF53850 2 255 4.93E-40 T 14-09-2016 PAJ_RS00940 1491073a39d2b648a44e604959fb0208 271 SMART SM00062 29 258 4.1E-30 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS00940 1491073a39d2b648a44e604959fb0208 271 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 254 2.0E-38 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS11360 e7130ae730146ae7a74c89f3bb4076b6 291 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 277 1.2E-111 T 14-09-2016 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 PAJ_RS11360 e7130ae730146ae7a74c89f3bb4076b6 291 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 8 275 6.2E-106 T 14-09-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 PAJ_RS11360 e7130ae730146ae7a74c89f3bb4076b6 291 PANTHER PTHR30406 1 283 6.4E-153 T 14-09-2016 PAJ_RS11360 e7130ae730146ae7a74c89f3bb4076b6 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 273 4.6E-13 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11360 e7130ae730146ae7a74c89f3bb4076b6 291 SUPERFAMILY SSF161098 16 268 4.58E-52 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11360 e7130ae730146ae7a74c89f3bb4076b6 291 PANTHER PTHR30406:SF1 1 283 6.4E-153 T 14-09-2016 PAJ_RS11360 e7130ae730146ae7a74c89f3bb4076b6 291 Gene3D G3DSA:1.10.3720.10 19 278 9.3E-48 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS18315 6ffcaa93837b4017a1f1e293435cc9a9 376 PANTHER PTHR30244 1 376 1.3E-272 T 14-09-2016 PAJ_RS18315 6ffcaa93837b4017a1f1e293435cc9a9 376 Gene3D G3DSA:3.40.640.10 1 248 6.2E-77 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS18315 6ffcaa93837b4017a1f1e293435cc9a9 376 PIRSF PIRSF000390 1 376 9.2E-119 T 14-09-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PAJ_RS18315 6ffcaa93837b4017a1f1e293435cc9a9 376 SUPERFAMILY SSF53383 2 375 3.2E-102 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS18315 6ffcaa93837b4017a1f1e293435cc9a9 376 Gene3D G3DSA:3.90.1150.10 251 375 3.2E-25 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS18315 6ffcaa93837b4017a1f1e293435cc9a9 376 PANTHER PTHR30244:SF14 1 376 1.3E-272 T 14-09-2016 PAJ_RS18315 6ffcaa93837b4017a1f1e293435cc9a9 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 375 2.4E-214 T 14-09-2016 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315|UniPathway: UPA00566 PAJ_RS18315 6ffcaa93837b4017a1f1e293435cc9a9 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 371 2.9E-88 T 14-09-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PAJ_RS18315 6ffcaa93837b4017a1f1e293435cc9a9 376 Hamap MF_02026 dTDP-4-amino-4,6-dideoxygalactose transaminase [wecE]. 1 376 78.03 T 14-09-2016 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE GO:0009246|GO:0019180 MetaCyc: PWY-7315|UniPathway: UPA00566 PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 Pfam PF05593 RHS Repeat 864 897 2.3E-6 T 14-09-2016 IPR031325 RHS repeat PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 Pfam PF05593 RHS Repeat 636 671 1.1E-8 T 14-09-2016 IPR031325 RHS repeat PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 Pfam PF05593 RHS Repeat 720 755 1.9E-6 T 14-09-2016 IPR031325 RHS repeat PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1192 1277 2.7E-27 T 14-09-2016 IPR022385 Rhs repeat-associated core GO:0097264 PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 PANTHER PTHR32305:SF6 38 992 3.7E-160 T 14-09-2016 PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 PANTHER PTHR32305:SF6 1012 1191 3.7E-160 T 14-09-2016 PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 657 697 3.1E-7 T 14-09-2016 IPR006530 YD repeat PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 636 675 1.7E-6 T 14-09-2016 IPR006530 YD repeat PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 741 776 9.4E-6 T 14-09-2016 IPR006530 YD repeat PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 699 740 2.3E-5 T 14-09-2016 IPR006530 YD repeat PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 678 719 6.6E-6 T 14-09-2016 IPR006530 YD repeat PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 PANTHER PTHR32305 38 992 3.7E-160 T 14-09-2016 PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 Pfam PF03527 RHS protein 1165 1201 1.5E-14 T 14-09-2016 IPR001826 RHS protein PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 PANTHER PTHR32305 1012 1191 3.7E-160 T 14-09-2016 PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 PANTHER PTHR32305:SF6 1210 1277 3.7E-160 T 14-09-2016 PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 PANTHER PTHR32305 1210 1277 3.7E-160 T 14-09-2016 PAJ_RS02170 d6dcb5030b0f66c892ffa24fdf28d644 1277 Pfam PF05488 PAAR motif 88 153 1.1E-17 T 14-09-2016 IPR008727 PAAR motif PAJ_RS19975 250d1851662d341eac9a4b855c52dbba 173 PANTHER PTHR11019 1 173 3.1E-70 T 14-09-2016 PAJ_RS19975 250d1851662d341eac9a4b855c52dbba 173 SUPERFAMILY SSF52317 4 169 2.5E-46 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS19975 250d1851662d341eac9a4b855c52dbba 173 Gene3D G3DSA:3.40.50.880 1 171 7.0E-52 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS19975 250d1851662d341eac9a4b855c52dbba 173 PANTHER PTHR11019:SF115 1 173 3.1E-70 T 14-09-2016 PAJ_RS19975 250d1851662d341eac9a4b855c52dbba 173 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 5 171 8.9E-61 T 14-09-2016 IPR006286 Peptidase C56, PfpI GO:0016798 PAJ_RS19975 250d1851662d341eac9a4b855c52dbba 173 Pfam PF01965 DJ-1/PfpI family 4 167 7.6E-54 T 14-09-2016 IPR002818 DJ-1/PfpI PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 SUPERFAMILY SSF63520 172 273 2.22E-22 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 Pfam PF00874 PRD domain 185 272 1.3E-13 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 Pfam PF00874 PRD domain 76 163 9.4E-17 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 Gene3D G3DSA:1.10.1790.10 65 163 1.4E-25 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 Gene3D G3DSA:1.10.1790.10 171 276 3.4E-27 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 PANTHER PTHR30185:SF2 1 276 8.6E-98 T 14-09-2016 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 SUPERFAMILY SSF63520 59 163 6.02E-25 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 SMART SM01061 1 59 3.5E-20 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 PANTHER PTHR30185 1 276 8.6E-98 T 14-09-2016 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 Pfam PF03123 CAT RNA binding domain 1 53 1.3E-18 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 SUPERFAMILY SSF50151 1 52 2.88E-14 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 PAJ_RS04990 4a00077addc89b265f8b7c7c507ae7ab 284 Gene3D G3DSA:2.30.24.10 1 53 1.6E-18 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 Pfam PF12848 ABC transporter 224 309 2.9E-21 T 14-09-2016 IPR032781 ABC-transporter extension domain PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 SMART SM00382 26 228 6.0E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 SMART SM00382 344 521 1.3E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 PANTHER PTHR19211 2 527 0.0 T 14-09-2016 PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 PANTHER PTHR19211:SF38 2 527 0.0 T 14-09-2016 PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 Gene3D G3DSA:3.40.50.300 5 100 4.5E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 Gene3D G3DSA:3.40.50.300 132 280 4.5E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 Gene3D G3DSA:3.40.50.300 318 528 2.2E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 Pfam PF00005 ABC transporter 336 467 9.1E-24 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 Pfam PF00005 ABC transporter 18 184 3.4E-18 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 SUPERFAMILY SSF52540 297 523 1.45E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03330 83307650f7a4135ea122d792343a5ff5 530 SUPERFAMILY SSF52540 6 238 9.55E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 SUPERFAMILY SSF58104 236 517 2.49E-70 T 14-09-2016 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 Pfam PF00672 HAMP domain 196 264 3.1E-9 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 Gene3D G3DSA:1.20.120.30 38 181 6.4E-34 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 515 1.2E-58 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 SMART SM00319 44 182 3.2E-23 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 SMART SM00283 269 516 6.7E-88 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 PANTHER PTHR32089:SF48 119 519 9.1E-152 T 14-09-2016 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 SMART SM00304 216 268 8.9E-7 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 PANTHER PTHR32089 119 519 9.1E-152 T 14-09-2016 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 6.1E-78 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 6.1E-78 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 6.1E-78 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 6.1E-78 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 6.1E-78 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 6.1E-78 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 6.1E-78 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 Pfam PF02203 Tar ligand binding domain homologue 1 172 3.3E-39 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 SUPERFAMILY SSF47170 25 180 2.62E-30 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19530 4bf6d7ac2aaa158d66800b0291ec642d 553 Gene3D G3DSA:1.10.287.950 285 488 1.3E-57 T 14-09-2016 PAJ_RS19660 7e643b4cdaaff517df4170052ea3c415 325 SUPERFAMILY SSF55681 13 323 2.79E-81 T 14-09-2016 PAJ_RS19660 7e643b4cdaaff517df4170052ea3c415 325 PANTHER PTHR22594 12 324 8.6E-150 T 14-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS19660 7e643b4cdaaff517df4170052ea3c415 325 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 17 320 3.2E-131 T 14-09-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 PAJ_RS19660 7e643b4cdaaff517df4170052ea3c415 325 Gene3D G3DSA:3.30.930.10 14 321 3.4E-72 T 14-09-2016 PAJ_RS19660 7e643b4cdaaff517df4170052ea3c415 325 PANTHER PTHR22594:SF7 12 324 8.6E-150 T 14-09-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 PAJ_RS19660 7e643b4cdaaff517df4170052ea3c415 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 99 116 1.8E-5 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PAJ_RS19660 7e643b4cdaaff517df4170052ea3c415 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 31 41 1.8E-5 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PAJ_RS19660 7e643b4cdaaff517df4170052ea3c415 325 Pfam PF00152 tRNA synthetases class II (D, K and N) 15 322 1.1E-46 T 14-09-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS19660 7e643b4cdaaff517df4170052ea3c415 325 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 2 325 56.258 T 14-09-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 PAJ_RS13110 ddea22edbad04111170a05c4849562ae 382 PANTHER PTHR30124:SF0 1 358 4.5E-130 T 14-09-2016 PAJ_RS13110 ddea22edbad04111170a05c4849562ae 382 Pfam PF03562 MltA specific insert domain 90 259 5.8E-42 T 14-09-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 PAJ_RS13110 ddea22edbad04111170a05c4849562ae 382 PANTHER PTHR30124 1 358 4.5E-130 T 14-09-2016 PAJ_RS13110 ddea22edbad04111170a05c4849562ae 382 SUPERFAMILY SSF50685 26 355 1.64E-108 T 14-09-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PAJ_RS13110 ddea22edbad04111170a05c4849562ae 382 SMART SM00925 125 259 1.1E-68 T 14-09-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 PAJ_RS13110 ddea22edbad04111170a05c4849562ae 382 PIRSF PIRSF019422 1 367 2.6E-84 T 14-09-2016 IPR026044 Membrane-bound lytic murein transglycosylase A PAJ_RS13110 ddea22edbad04111170a05c4849562ae 382 Gene3D G3DSA:2.40.40.10 79 165 5.1E-12 T 14-09-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PAJ_RS13110 ddea22edbad04111170a05c4849562ae 382 Gene3D G3DSA:2.40.40.10 168 355 3.3E-46 T 14-09-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PAJ_RS13110 ddea22edbad04111170a05c4849562ae 382 Pfam PF06725 3D domain 279 356 7.5E-24 T 14-09-2016 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 PAJ_RS17465 353eaf4032702e25259666e6b2a5577e 457 PANTHER PTHR13932:SF6 1 451 9.2E-251 T 14-09-2016 PAJ_RS17465 353eaf4032702e25259666e6b2a5577e 457 Gene3D G3DSA:3.80.30.20 53 283 3.1E-29 T 14-09-2016 IPR023404 Radical SAM, alpha/beta horseshoe PAJ_RS17465 353eaf4032702e25259666e6b2a5577e 457 Pfam PF06969 HemN C-terminal domain 363 431 6.7E-10 T 14-09-2016 IPR010723 HemN, C-terminal PAJ_RS17465 353eaf4032702e25259666e6b2a5577e 457 PIRSF PIRSF000167 3 454 1.3E-171 T 14-09-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 PAJ_RS17465 353eaf4032702e25259666e6b2a5577e 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 7 457 3.5E-212 T 14-09-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 PAJ_RS17465 353eaf4032702e25259666e6b2a5577e 457 Pfam PF04055 Radical SAM superfamily 57 228 2.0E-17 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS17465 353eaf4032702e25259666e6b2a5577e 457 SUPERFAMILY SSF102114 6 444 2.35E-141 T 14-09-2016 PAJ_RS17465 353eaf4032702e25259666e6b2a5577e 457 SMART SM00729 52 272 2.1E-51 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PAJ_RS17465 353eaf4032702e25259666e6b2a5577e 457 PANTHER PTHR13932 1 451 9.2E-251 T 14-09-2016 PAJ_RS15215 fa9cfd00c86dbfc1d67561ffe898fe00 181 Gene3D G3DSA:1.10.60.30 110 179 4.6E-31 T 14-09-2016 IPR023153 PSPTO4464-like domain PAJ_RS15215 fa9cfd00c86dbfc1d67561ffe898fe00 181 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 15 179 23.901 T 14-09-2016 IPR006839 Ribosome-associated, YjgA PAJ_RS15215 fa9cfd00c86dbfc1d67561ffe898fe00 181 Gene3D G3DSA:1.10.60.30 35 109 5.6E-30 T 14-09-2016 IPR023153 PSPTO4464-like domain PAJ_RS15215 fa9cfd00c86dbfc1d67561ffe898fe00 181 PANTHER PTHR38101 4 180 8.2E-84 T 14-09-2016 PAJ_RS15215 fa9cfd00c86dbfc1d67561ffe898fe00 181 Pfam PF04751 Protein of unknown function (DUF615) 25 175 2.0E-55 T 14-09-2016 IPR006839 Ribosome-associated, YjgA PAJ_RS15215 fa9cfd00c86dbfc1d67561ffe898fe00 181 SUPERFAMILY SSF158710 36 178 5.1E-52 T 14-09-2016 PAJ_RS15215 fa9cfd00c86dbfc1d67561ffe898fe00 181 PIRSF PIRSF016183 9 181 1.1E-71 T 14-09-2016 IPR006839 Ribosome-associated, YjgA PAJ_RS15215 fa9cfd00c86dbfc1d67561ffe898fe00 181 PANTHER PTHR38101:SF1 4 180 8.2E-84 T 14-09-2016 PAJ_RS02450 06c7c54a1e4129f40aec59bc32934fe4 156 Gene3D G3DSA:3.40.1280.10 2 155 2.1E-53 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PAJ_RS02450 06c7c54a1e4129f40aec59bc32934fe4 156 PIRSF PIRSF004505 1 155 1.1E-40 T 14-09-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS02450 06c7c54a1e4129f40aec59bc32934fe4 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 156 3.9E-82 T 14-09-2016 IPR016051 Ribosomal RNA large subunit methyltransferase H GO:0005737|GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS02450 06c7c54a1e4129f40aec59bc32934fe4 156 PANTHER PTHR33603:SF1 1 155 7.7E-70 T 14-09-2016 PAJ_RS02450 06c7c54a1e4129f40aec59bc32934fe4 156 PANTHER PTHR33603 1 155 7.7E-70 T 14-09-2016 PAJ_RS02450 06c7c54a1e4129f40aec59bc32934fe4 156 Pfam PF02590 Predicted SPOUT methyltransferase 2 154 1.1E-46 T 14-09-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS02450 06c7c54a1e4129f40aec59bc32934fe4 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 26.636 T 14-09-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS02450 06c7c54a1e4129f40aec59bc32934fe4 156 SUPERFAMILY SSF75217 2 154 2.04E-48 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases PAJ_RS14705 ec0b13118fd72d4e471d4d1cdcee5023 389 Pfam PF04984 Phage tail sheath protein 1 95 7.7E-16 T 14-09-2016 IPR007067 Tail sheath protein PAJ_RS14705 ec0b13118fd72d4e471d4d1cdcee5023 389 Pfam PF04984 Phage tail sheath protein 91 376 7.4E-56 T 14-09-2016 IPR007067 Tail sheath protein PAJ_RS14705 ec0b13118fd72d4e471d4d1cdcee5023 389 PANTHER PTHR35861 1 388 1.6E-126 T 14-09-2016 PAJ_RS14705 ec0b13118fd72d4e471d4d1cdcee5023 389 PANTHER PTHR35861:SF1 1 388 1.6E-126 T 14-09-2016 PAJ_RS05245 df5f09016a46dd6f6137fef8e3913891 376 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 195 320 1.3E-9 T 14-09-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 PAJ_RS05245 df5f09016a46dd6f6137fef8e3913891 376 TIGRFAM TIGR04414 hepto_Aah_TibC: autotransporter strand-loop-strand O-heptosyltransferase 2 367 7.1E-179 T 14-09-2016 IPR030929 Glycosyltransferase Aah/TibC GO:0016757 KEGG: 00540+2.4.-.- PAJ_RS05245 df5f09016a46dd6f6137fef8e3913891 376 SUPERFAMILY SSF53756 91 369 8.47E-18 T 14-09-2016 PAJ_RS05245 df5f09016a46dd6f6137fef8e3913891 376 Gene3D G3DSA:3.40.50.2000 184 370 1.5E-22 T 14-09-2016 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 Pfam PF00633 Helix-hairpin-helix motif 100 127 2.2E-7 T 14-09-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 SUPERFAMILY SSF48150 3 207 9.89E-73 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 PANTHER PTHR10359 1 210 3.6E-88 T 14-09-2016 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 Hamap MF_00942 Endonuclease III [nth]. 1 209 36.981 T 14-09-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 PANTHER PTHR10359:SF18 1 210 3.6E-88 T 14-09-2016 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 Gene3D G3DSA:1.10.1670.10 123 207 7.2E-36 T 14-09-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 14-09-2016 IPR004035 Endonuclease III, iron-sulphur binding site PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 SMART SM00525 186 206 3.4E-4 T 14-09-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 PIRSF PIRSF001435 1 210 2.6E-49 T 14-09-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 SMART SM00478 38 185 2.7E-52 T 14-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 14-09-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 Gene3D G3DSA:1.10.340.30 22 122 6.4E-33 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 14-09-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 2.7E-19 T 14-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PAJ_RS06195 7e1928fed0d2b7afaa1e4d19a96b8888 210 TIGRFAM TIGR01083 nth: endonuclease III 4 194 1.1E-88 T 14-09-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 PAJ_RS10570 a40da38f4fd7c992a80053ea1b5c84b8 485 PANTHER PTHR22773:SF41 1 485 7.1E-196 T 14-09-2016 PAJ_RS10570 a40da38f4fd7c992a80053ea1b5c84b8 485 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 475 17.86 T 14-09-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 PAJ_RS10570 a40da38f4fd7c992a80053ea1b5c84b8 485 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 475 6.2E-137 T 14-09-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 PAJ_RS10570 a40da38f4fd7c992a80053ea1b5c84b8 485 Pfam PF00361 Proton-conducting membrane transporter 122 420 1.3E-83 T 14-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 PAJ_RS10570 a40da38f4fd7c992a80053ea1b5c84b8 485 PANTHER PTHR22773 1 485 7.1E-196 T 14-09-2016 PAJ_RS01865 514d58eb2111ff7b6dea096de9bd59f8 129 PANTHER PTHR35813 1 125 1.7E-45 T 14-09-2016 PAJ_RS01865 514d58eb2111ff7b6dea096de9bd59f8 129 PIRSF PIRSF016789 2 123 1.4E-45 T 14-09-2016 IPR007401 Protein of unknown function DUF454 PAJ_RS01865 514d58eb2111ff7b6dea096de9bd59f8 129 PANTHER PTHR35813:SF1 1 125 1.7E-45 T 14-09-2016 PAJ_RS01865 514d58eb2111ff7b6dea096de9bd59f8 129 Pfam PF04304 Protein of unknown function (DUF454) 3 116 8.7E-40 T 14-09-2016 IPR007401 Protein of unknown function DUF454 PAJ_RS13620 edd5d12316f67b13ef038725b37273be 285 PANTHER PTHR14194 2 285 3.1E-110 T 14-09-2016 PAJ_RS13620 edd5d12316f67b13ef038725b37273be 285 SUPERFAMILY SSF51735 2 255 1.9E-57 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13620 edd5d12316f67b13ef038725b37273be 285 Pfam PF13460 NAD(P)H-binding 6 182 4.8E-20 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13620 edd5d12316f67b13ef038725b37273be 285 PANTHER PTHR14194:SF73 2 285 3.1E-110 T 14-09-2016 PAJ_RS13620 edd5d12316f67b13ef038725b37273be 285 Gene3D G3DSA:3.40.50.720 2 217 2.1E-40 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 Gene3D G3DSA:3.40.50.300 9 264 1.1E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 Gene3D G3DSA:3.40.50.300 284 516 2.5E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 Pfam PF00005 ABC transporter 33 190 3.8E-24 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 Pfam PF00005 ABC transporter 309 461 4.0E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 SUPERFAMILY SSF52540 10 267 1.2E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 SMART SM00382 318 510 2.7E-17 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 SMART SM00382 41 240 4.7E-17 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 SUPERFAMILY SSF52540 284 517 1.21E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 PANTHER PTHR24220:SF574 13 418 3.4E-102 T 14-09-2016 PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 PANTHER PTHR24220 13 418 3.4E-102 T 14-09-2016 PAJ_RS09490 daed911dbf01095f8069c7b92cfb3179 554 ProSitePatterns PS00211 ABC transporters family signature. 433 447 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS02455 5b8ef9eaec5e4f813db8da1e71bd4e30 105 PANTHER PTHR21043 1 105 3.1E-47 T 14-09-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS PAJ_RS02455 5b8ef9eaec5e4f813db8da1e71bd4e30 105 Gene3D G3DSA:3.30.460.10 4 105 1.0E-38 T 14-09-2016 PAJ_RS02455 5b8ef9eaec5e4f813db8da1e71bd4e30 105 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 7.4E-29 T 14-09-2016 PAJ_RS02455 5b8ef9eaec5e4f813db8da1e71bd4e30 105 SUPERFAMILY SSF81301 4 105 7.03E-37 T 14-09-2016 PAJ_RS02455 5b8ef9eaec5e4f813db8da1e71bd4e30 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.776 T 14-09-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS PAJ_RS02455 5b8ef9eaec5e4f813db8da1e71bd4e30 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 3.6E-39 T 14-09-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 Gene3D G3DSA:1.20.1250.20 8 187 5.0E-34 T 14-09-2016 PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 SUPERFAMILY SSF103473 242 453 8.24E-64 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 SUPERFAMILY SSF103473 6 192 8.24E-64 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 Gene3D G3DSA:1.20.1250.20 253 460 8.2E-17 T 14-09-2016 PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 Hamap MF_01577 Putative multidrug resistance protein MdtD [mdtD]. 1 462 42.191 T 14-09-2016 IPR023721 Multidrug resistance protein MdtD, putative PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 PANTHER PTHR23501 7 464 2.9E-289 T 14-09-2016 PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 Pfam PF07690 Major Facilitator Superfamily 13 403 2.6E-47 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 410 2.1E-72 T 14-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 PANTHER PTHR23501:SF36 7 464 2.9E-289 T 14-09-2016 PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 12 36 2.4E-8 T 14-09-2016 PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 103 123 2.4E-8 T 14-09-2016 PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 197 215 2.4E-8 T 14-09-2016 PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 133 157 2.4E-8 T 14-09-2016 PAJ_RS10030 58fcdedd99a97f2e507731067db3976c 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 394 413 2.4E-8 T 14-09-2016 PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 14 641 49.982 T 14-09-2016 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 KEGG: 00650+2.3.1.19 PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 Pfam PF05127 Helicase 190 331 7.8E-40 T 14-09-2016 IPR007807 Helicase domain PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 Pfam PF08351 Domain of unknown function (DUF1726) 64 146 3.1E-7 T 14-09-2016 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 SUPERFAMILY SSF55729 346 408 4.33E-11 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 SUPERFAMILY SSF55729 444 502 4.33E-11 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 Pfam PF13718 GNAT acetyltransferase 2 361 467 2.7E-14 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 PANTHER PTHR10925:SF6 10 591 2.6E-207 T 14-09-2016 PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 Pfam PF17176 tRNA-binding domain 527 641 2.7E-28 T 14-09-2016 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain KEGG: 00650+2.3.1.19 PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 Gene3D G3DSA:3.40.50.300 155 280 2.7E-4 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 SUPERFAMILY SSF52540 173 282 1.45E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 PANTHER PTHR10925 10 591 2.6E-207 T 14-09-2016 IPR032672 TmcA/NAT10/Kre33 GO:0008080 PAJ_RS11540 3032a2529d6f907e00218830a36da99f 655 Gene3D G3DSA:3.40.630.30 346 502 5.8E-10 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS08640 c248ebdfc05ab13daca83d677c75e3f9 373 PANTHER PTHR39192 7 373 9.0E-150 T 14-09-2016 PAJ_RS08640 c248ebdfc05ab13daca83d677c75e3f9 373 Pfam PF09375 Imelysin 134 365 9.5E-46 T 14-09-2016 PAJ_RS08640 c248ebdfc05ab13daca83d677c75e3f9 373 Pfam PF13473 Cupredoxin-like domain 9 112 4.4E-23 T 14-09-2016 IPR028096 EfeO-type cupredoxin-like domain PAJ_RS08640 c248ebdfc05ab13daca83d677c75e3f9 373 Gene3D G3DSA:2.60.40.420 15 113 2.8E-5 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS05190 e367f91ba8227fb461b3489748961a32 192 SUPERFAMILY SSF47413 12 79 2.95E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS05190 e367f91ba8227fb461b3489748961a32 192 PANTHER PTHR10245 10 191 3.4E-36 T 14-09-2016 PAJ_RS05190 e367f91ba8227fb461b3489748961a32 192 Gene3D G3DSA:1.10.260.40 9 82 5.2E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS05190 e367f91ba8227fb461b3489748961a32 192 SMART SM00530 19 74 1.5E-12 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS05190 e367f91ba8227fb461b3489748961a32 192 Pfam PF01381 Helix-turn-helix 23 73 2.7E-11 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS05190 e367f91ba8227fb461b3489748961a32 192 Gene3D G3DSA:2.60.120.10 87 190 9.1E-9 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS05190 e367f91ba8227fb461b3489748961a32 192 SUPERFAMILY SSF51182 67 191 1.87E-13 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS05190 e367f91ba8227fb461b3489748961a32 192 PANTHER PTHR10245:SF21 10 191 3.4E-36 T 14-09-2016 PAJ_RS20695 bf3408b6d3354f85b03f2c647d407d92 365 Pfam PF00990 Diguanylate cyclase, GGDEF domain 192 346 4.1E-45 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS20695 bf3408b6d3354f85b03f2c647d407d92 365 Gene3D G3DSA:3.30.70.270 193 351 2.2E-46 T 14-09-2016 PAJ_RS20695 bf3408b6d3354f85b03f2c647d407d92 365 PANTHER PTHR10799:SF750 221 347 1.0E-22 T 14-09-2016 PAJ_RS20695 bf3408b6d3354f85b03f2c647d407d92 365 PANTHER PTHR10799:SF750 44 174 1.0E-22 T 14-09-2016 PAJ_RS20695 bf3408b6d3354f85b03f2c647d407d92 365 SMART SM00267 180 350 1.8E-54 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS20695 bf3408b6d3354f85b03f2c647d407d92 365 SUPERFAMILY SSF55073 196 350 1.02E-42 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS20695 bf3408b6d3354f85b03f2c647d407d92 365 PANTHER PTHR10799 221 347 1.0E-22 T 14-09-2016 PAJ_RS20695 bf3408b6d3354f85b03f2c647d407d92 365 PANTHER PTHR10799 44 174 1.0E-22 T 14-09-2016 PAJ_RS20695 bf3408b6d3354f85b03f2c647d407d92 365 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 190 348 5.8E-45 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS20585 8115c1b29c3d330e69ab558730c8761e 578 PANTHER PTHR30151 369 575 1.2E-161 T 14-09-2016 PAJ_RS20585 8115c1b29c3d330e69ab558730c8761e 578 SUPERFAMILY SSF161098 61 255 2.49E-19 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS20585 8115c1b29c3d330e69ab558730c8761e 578 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 252 9.6E-12 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS20585 8115c1b29c3d330e69ab558730c8761e 578 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 392 560 3.1E-14 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS20585 8115c1b29c3d330e69ab558730c8761e 578 PANTHER PTHR30151 66 224 1.2E-161 T 14-09-2016 PAJ_RS20585 8115c1b29c3d330e69ab558730c8761e 578 Gene3D G3DSA:1.10.3720.10 374 564 1.4E-14 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS20585 8115c1b29c3d330e69ab558730c8761e 578 Gene3D G3DSA:1.10.3720.10 24 251 1.6E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS20585 8115c1b29c3d330e69ab558730c8761e 578 SUPERFAMILY SSF161098 372 563 1.03E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS20585 8115c1b29c3d330e69ab558730c8761e 578 PANTHER PTHR30151:SF10 369 575 1.2E-161 T 14-09-2016 PAJ_RS20585 8115c1b29c3d330e69ab558730c8761e 578 PANTHER PTHR30151:SF10 66 224 1.2E-161 T 14-09-2016 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 SUPERFAMILY SSF52172 2 126 6.26E-26 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 SUPERFAMILY SSF46894 124 189 2.89E-19 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 135 149 6.7E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 177 6.7E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 165 6.7E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 PANTHER PTHR26402 2 186 4.1E-46 T 14-09-2016 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 SMART SM00448 2 114 8.7E-22 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 Pfam PF00072 Response regulator receiver domain 5 114 3.1E-18 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 Pfam PF00196 Bacterial regulatory proteins, luxR family 134 188 1.6E-19 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 Gene3D G3DSA:1.10.10.10 141 189 5.0E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 ProSitePatterns PS00622 LuxR-type HTH domain signature. 149 176 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 Gene3D G3DSA:3.40.50.2300 2 140 4.7E-27 T 14-09-2016 PAJ_RS02870 ad4403b3d617c94d2fe92818617c5376 193 SMART SM00421 132 189 4.6E-22 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS19690 5fb8eac43db8e7f7faa0880ab23cf0eb 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 1.4E-47 T 14-09-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 PAJ_RS19690 5fb8eac43db8e7f7faa0880ab23cf0eb 130 Gene3D G3DSA:3.30.230.10 5 130 4.3E-50 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS19690 5fb8eac43db8e7f7faa0880ab23cf0eb 130 SUPERFAMILY SSF54211 6 130 1.06E-48 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS19690 5fb8eac43db8e7f7faa0880ab23cf0eb 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.434 T 14-09-2016 IPR023035 Ribosomal protein S9, bacterial/plastid PAJ_RS19690 5fb8eac43db8e7f7faa0880ab23cf0eb 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 14-09-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 PAJ_RS19690 5fb8eac43db8e7f7faa0880ab23cf0eb 130 PANTHER PTHR21569 1 130 3.7E-75 T 14-09-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 PAJ_RS06165 0757e5fc3af76cc1de160163124752a3 218 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 16 218 38.418 T 14-09-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PAJ_RS06165 0757e5fc3af76cc1de160163124752a3 218 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 6 218 2.6E-97 T 14-09-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PAJ_RS06165 0757e5fc3af76cc1de160163124752a3 218 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 188 201 - T 14-09-2016 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PAJ_RS06165 0757e5fc3af76cc1de160163124752a3 218 SUPERFAMILY SSF50475 21 218 8.39E-68 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PAJ_RS06165 0757e5fc3af76cc1de160163124752a3 218 Gene3D G3DSA:2.30.110.10 22 218 7.7E-83 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PAJ_RS06165 0757e5fc3af76cc1de160163124752a3 218 PANTHER PTHR10851:SF0 1 218 1.6E-112 T 14-09-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PAJ_RS06165 0757e5fc3af76cc1de160163124752a3 218 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 178 218 2.2E-19 T 14-09-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PAJ_RS06165 0757e5fc3af76cc1de160163124752a3 218 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 40 123 1.9E-22 T 14-09-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PAJ_RS06165 0757e5fc3af76cc1de160163124752a3 218 PIRSF PIRSF000190 1 218 2.4E-83 T 14-09-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PAJ_RS06165 0757e5fc3af76cc1de160163124752a3 218 PANTHER PTHR10851 1 218 1.6E-112 T 14-09-2016 PAJ_RS08515 19d9ec9ab12af99d71a3c3689b8252f9 165 PANTHER PTHR22617 3 165 8.1E-59 T 14-09-2016 PAJ_RS08515 19d9ec9ab12af99d71a3c3689b8252f9 165 Gene3D G3DSA:2.40.50.180 56 92 9.1E-10 T 14-09-2016 PAJ_RS08515 19d9ec9ab12af99d71a3c3689b8252f9 165 Gene3D G3DSA:2.30.30.40 93 144 2.5E-9 T 14-09-2016 PAJ_RS08515 19d9ec9ab12af99d71a3c3689b8252f9 165 Pfam PF01584 CheW-like domain 18 154 2.1E-37 T 14-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PAJ_RS08515 19d9ec9ab12af99d71a3c3689b8252f9 165 SMART SM00260 14 151 3.5E-45 T 14-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PAJ_RS08515 19d9ec9ab12af99d71a3c3689b8252f9 165 SUPERFAMILY SSF50341 17 156 1.44E-39 T 14-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PAJ_RS16795 0e652eea61b85c880f612b5faa04d9ff 207 Gene3D G3DSA:1.20.1050.10 88 198 2.1E-32 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS16795 0e652eea61b85c880f612b5faa04d9ff 207 SUPERFAMILY SSF52833 1 85 5.95E-22 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS16795 0e652eea61b85c880f612b5faa04d9ff 207 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 79 6.5E-13 T 14-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PAJ_RS16795 0e652eea61b85c880f612b5faa04d9ff 207 SUPERFAMILY SSF47616 79 198 5.15E-25 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS16795 0e652eea61b85c880f612b5faa04d9ff 207 PANTHER PTHR11260:SF253 2 198 8.7E-67 T 14-09-2016 PAJ_RS16795 0e652eea61b85c880f612b5faa04d9ff 207 PANTHER PTHR11260 2 198 8.7E-67 T 14-09-2016 PAJ_RS16795 0e652eea61b85c880f612b5faa04d9ff 207 Gene3D G3DSA:3.40.30.10 6 87 1.3E-21 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS08610 e628aa42bc7633b190d37c7f9c272fe1 470 SUPERFAMILY SSF51905 303 454 2.66E-6 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS08610 e628aa42bc7633b190d37c7f9c272fe1 470 SUPERFAMILY SSF51905 192 258 2.66E-6 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS08610 e628aa42bc7633b190d37c7f9c272fe1 470 SUPERFAMILY SSF51905 2 230 8.55E-25 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS08610 e628aa42bc7633b190d37c7f9c272fe1 470 Pfam PF13454 FAD-NAD(P)-binding 7 156 1.4E-29 T 14-09-2016 PAJ_RS08610 e628aa42bc7633b190d37c7f9c272fe1 470 PANTHER PTHR40254:SF1 3 453 2.1E-64 T 14-09-2016 PAJ_RS08610 e628aa42bc7633b190d37c7f9c272fe1 470 PANTHER PTHR40254 3 453 2.1E-64 T 14-09-2016 PAJ_RS08610 e628aa42bc7633b190d37c7f9c272fe1 470 Gene3D G3DSA:3.50.50.60 2 164 8.2E-13 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS08610 e628aa42bc7633b190d37c7f9c272fe1 470 Gene3D G3DSA:3.50.50.60 323 454 1.5E-6 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS08610 e628aa42bc7633b190d37c7f9c272fe1 470 Gene3D G3DSA:3.50.50.60 190 261 1.5E-6 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 PANTHER PTHR11544:SF54 1 70 1.2E-44 T 14-09-2016 PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 SUPERFAMILY SSF50249 2 69 1.79E-25 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 SMART SM00357 6 70 2.3E-30 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 PIRSF PIRSF002599 1 70 4.1E-25 T 14-09-2016 IPR012156 Cold shock, CspA GO:0003676 PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 PANTHER PTHR11544 1 70 1.2E-44 T 14-09-2016 PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 PRINTS PR00050 Cold shock protein signature 43 61 2.2E-18 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 PRINTS PR00050 Cold shock protein signature 28 37 2.2E-18 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 PRINTS PR00050 Cold shock protein signature 7 22 2.2E-18 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 Gene3D G3DSA:2.40.50.140 5 68 2.7E-31 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 14-09-2016 IPR019844 Cold-shock conserved site PAJ_RS19535 e6109018659339d9c16a7917c41f3b1f 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.0E-32 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS02725 0bde1ac88c0f55281af9a87c762645fe 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS02725 0bde1ac88c0f55281af9a87c762645fe 238 Gene3D G3DSA:3.10.20.30 1 106 2.6E-37 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS02725 0bde1ac88c0f55281af9a87c762645fe 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 1.1E-9 T 14-09-2016 PAJ_RS02725 0bde1ac88c0f55281af9a87c762645fe 238 SUPERFAMILY SSF54292 1 106 2.01E-30 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PAJ_RS02725 0bde1ac88c0f55281af9a87c762645fe 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 230 2.1E-88 T 14-09-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 PAJ_RS02725 0bde1ac88c0f55281af9a87c762645fe 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 111 1.1E-31 T 14-09-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 PAJ_RS02725 0bde1ac88c0f55281af9a87c762645fe 238 PANTHER PTHR11921:SF29 4 236 1.3E-132 T 14-09-2016 PAJ_RS02725 0bde1ac88c0f55281af9a87c762645fe 238 SUPERFAMILY SSF46548 107 236 3.31E-39 T 14-09-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PAJ_RS02725 0bde1ac88c0f55281af9a87c762645fe 238 PANTHER PTHR11921 4 236 1.3E-132 T 14-09-2016 PAJ_RS02725 0bde1ac88c0f55281af9a87c762645fe 238 Gene3D G3DSA:1.10.1060.10 108 236 2.7E-45 T 14-09-2016 PAJ_RS08800 c80c313333232a0e47dc1714f4b3bc42 301 SUPERFAMILY SSF64518 1 301 3.4E-93 T 14-09-2016 PAJ_RS08800 c80c313333232a0e47dc1714f4b3bc42 301 PRINTS PR00207 Flagellin signature 75 94 2.5E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08800 c80c313333232a0e47dc1714f4b3bc42 301 PRINTS PR00207 Flagellin signature 110 133 2.5E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08800 c80c313333232a0e47dc1714f4b3bc42 301 PRINTS PR00207 Flagellin signature 36 53 2.5E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08800 c80c313333232a0e47dc1714f4b3bc42 301 Pfam PF00700 Bacterial flagellin C-terminal helical region 216 300 7.7E-30 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08800 c80c313333232a0e47dc1714f4b3bc42 301 Gene3D G3DSA:1.20.1330.10 54 257 6.0E-54 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08800 c80c313333232a0e47dc1714f4b3bc42 301 PANTHER PTHR30244:SF1 2 301 4.7E-118 T 14-09-2016 PAJ_RS08800 c80c313333232a0e47dc1714f4b3bc42 301 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 138 2.8E-42 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08800 c80c313333232a0e47dc1714f4b3bc42 301 PANTHER PTHR30244 2 301 4.7E-118 T 14-09-2016 PAJ_RS10915 fafc5897e3c59369d2d4e165947a19dc 160 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 70 1.6E-6 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PAJ_RS10915 fafc5897e3c59369d2d4e165947a19dc 160 SUPERFAMILY SSF53254 2 143 5.41E-17 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS10915 fafc5897e3c59369d2d4e165947a19dc 160 PANTHER PTHR23029 1 77 5.0E-13 T 14-09-2016 PAJ_RS10915 fafc5897e3c59369d2d4e165947a19dc 160 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 153 5.1E-51 T 14-09-2016 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0008969 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- PAJ_RS10915 fafc5897e3c59369d2d4e165947a19dc 160 Gene3D G3DSA:3.40.50.1240 1 157 2.5E-41 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 PANTHER PTHR30061 1 394 6.2E-128 T 14-09-2016 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 PANTHER PTHR30061:SF21 1 394 6.2E-128 T 14-09-2016 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 Gene3D G3DSA:3.40.190.10 29 150 7.8E-24 T 14-09-2016 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 Gene3D G3DSA:3.40.190.10 151 320 4.7E-55 T 14-09-2016 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 SUPERFAMILY SSF53850 27 392 1.55E-91 T 14-09-2016 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 Pfam PF13416 Bacterial extracellular solute-binding protein 48 333 1.7E-39 T 14-09-2016 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 PRINTS PR00181 Maltose binding protein signature 68 86 7.0E-92 T 14-09-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 PRINTS PR00181 Maltose binding protein signature 34 52 7.0E-92 T 14-09-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 PRINTS PR00181 Maltose binding protein signature 149 168 7.0E-92 T 14-09-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 PRINTS PR00181 Maltose binding protein signature 355 374 7.0E-92 T 14-09-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 PRINTS PR00181 Maltose binding protein signature 128 147 7.0E-92 T 14-09-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 PRINTS PR00181 Maltose binding protein signature 231 250 7.0E-92 T 14-09-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 PRINTS PR00181 Maltose binding protein signature 169 188 7.0E-92 T 14-09-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 PAJ_RS06845 611915a1831aec0264d9b513a090ae9f 394 PRINTS PR00181 Maltose binding protein signature 297 318 7.0E-92 T 14-09-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 Pfam PF07729 FCD domain 89 208 2.4E-22 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 PANTHER PTHR11751:SF362 12 101 1.4E-35 T 14-09-2016 PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 SUPERFAMILY SSF46785 8 79 1.69E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 8.4E-6 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 8.4E-6 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 SMART SM00345 17 75 9.2E-22 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 SUPERFAMILY SSF48008 82 210 1.02E-23 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 Gene3D G3DSA:1.20.120.530 80 212 7.0E-25 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 Gene3D G3DSA:1.10.10.10 7 76 2.6E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 PANTHER PTHR11751 12 101 1.4E-35 T 14-09-2016 PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 SMART SM00895 85 209 1.9E-14 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS10060 0de05ab62421a442100a21883e4a7715 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 8.3E-18 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS13285 202693cc4dbd4e6f36a684b4109ac0af 328 SUPERFAMILY SSF101790 244 326 3.73E-26 T 14-09-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain PAJ_RS13285 202693cc4dbd4e6f36a684b4109ac0af 328 PANTHER PTHR22602 7 318 1.3E-72 T 14-09-2016 PAJ_RS13285 202693cc4dbd4e6f36a684b4109ac0af 328 SUPERFAMILY SSF103025 4 242 1.11E-65 T 14-09-2016 PAJ_RS13285 202693cc4dbd4e6f36a684b4109ac0af 328 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 188 252 1.3E-27 T 14-09-2016 IPR017703 YgfZ/GcvT conserved site PAJ_RS13285 202693cc4dbd4e6f36a684b4109ac0af 328 PANTHER PTHR22602:SF0 7 318 1.3E-72 T 14-09-2016 PAJ_RS13285 202693cc4dbd4e6f36a684b4109ac0af 328 Gene3D G3DSA:3.30.70.1400 27 112 3.4E-31 T 14-09-2016 PAJ_RS13285 202693cc4dbd4e6f36a684b4109ac0af 328 Pfam PF01571 Aminomethyltransferase folate-binding domain 31 134 6.3E-7 T 14-09-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal PAJ_RS13285 202693cc4dbd4e6f36a684b4109ac0af 328 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 322 48.002 T 14-09-2016 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 PAJ_RS16720 1078aaa73b00f601daddf719edca5102 201 SUPERFAMILY SSF53474 3 199 9.28E-36 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS16720 1078aaa73b00f601daddf719edca5102 201 PANTHER PTHR10655 2 184 1.5E-30 T 14-09-2016 PAJ_RS16720 1078aaa73b00f601daddf719edca5102 201 Pfam PF02230 Phospholipase/Carboxylesterase 2 198 4.8E-29 T 14-09-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 PAJ_RS16720 1078aaa73b00f601daddf719edca5102 201 Gene3D G3DSA:3.40.50.1820 3 200 2.5E-39 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS12640 afcdee004110eae5893ed261e6b5ad6b 326 SMART SM00363 18 83 3.1E-12 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS12640 afcdee004110eae5893ed261e6b5ad6b 326 SUPERFAMILY SSF55174 17 69 2.69E-11 T 14-09-2016 PAJ_RS12640 afcdee004110eae5893ed261e6b5ad6b 326 Gene3D G3DSA:3.10.290.10 18 69 2.0E-12 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS12640 afcdee004110eae5893ed261e6b5ad6b 326 PANTHER PTHR11079 6 323 5.0E-158 T 14-09-2016 PAJ_RS12640 afcdee004110eae5893ed261e6b5ad6b 326 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 14-09-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS12640 afcdee004110eae5893ed261e6b5ad6b 326 Pfam PF00849 RNA pseudouridylate synthase 92 242 5.2E-32 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS12640 afcdee004110eae5893ed261e6b5ad6b 326 SUPERFAMILY SSF55120 77 322 7.2E-79 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS12640 afcdee004110eae5893ed261e6b5ad6b 326 PANTHER PTHR11079:SF73 6 323 5.0E-158 T 14-09-2016 PAJ_RS12640 afcdee004110eae5893ed261e6b5ad6b 326 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 312 1.6E-109 T 14-09-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS12640 afcdee004110eae5893ed261e6b5ad6b 326 Pfam PF01479 S4 domain 18 65 1.3E-10 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS10640 080183694155390be14fdb41e16b98d8 405 Pfam PF00155 Aminotransferase class I and II 36 389 4.4E-47 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS10640 080183694155390be14fdb41e16b98d8 405 PANTHER PTHR11751:SF303 10 401 3.0E-199 T 14-09-2016 PAJ_RS10640 080183694155390be14fdb41e16b98d8 405 SUPERFAMILY SSF53383 9 403 3.63E-94 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS10640 080183694155390be14fdb41e16b98d8 405 Gene3D G3DSA:3.90.1150.10 281 404 2.6E-39 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS10640 080183694155390be14fdb41e16b98d8 405 Gene3D G3DSA:3.40.640.10 56 280 3.0E-68 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS10640 080183694155390be14fdb41e16b98d8 405 PANTHER PTHR11751 10 401 3.0E-199 T 14-09-2016 PAJ_RS12370 62c6763339646ca4b27fc6bd2d70d87a 142 PANTHER PTHR33337:SF7 17 136 3.5E-56 T 14-09-2016 PAJ_RS12370 62c6763339646ca4b27fc6bd2d70d87a 142 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 115 2.2E-11 T 14-09-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 PAJ_RS12370 62c6763339646ca4b27fc6bd2d70d87a 142 PANTHER PTHR33337 17 136 3.5E-56 T 14-09-2016 PAJ_RS12370 62c6763339646ca4b27fc6bd2d70d87a 142 SUPERFAMILY SSF51316 2 132 9.63E-27 T 14-09-2016 IPR011057 Mss4-like PAJ_RS12370 62c6763339646ca4b27fc6bd2d70d87a 142 Gene3D G3DSA:3.90.1590.10 3 136 5.7E-26 T 14-09-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 SUPERFAMILY SSF47170 26 179 7.06E-9 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 Pfam PF00672 HAMP domain 196 264 4.2E-10 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 PANTHER PTHR32089:SF48 10 518 2.4E-140 T 14-09-2016 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 SMART SM00304 215 267 9.2E-8 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 514 1.2E-60 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 Gene3D G3DSA:1.10.287.950 284 487 6.8E-60 T 14-09-2016 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 395 424 6.1E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 366 393 6.1E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 289 318 6.1E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 6.1E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 53 68 6.1E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 190 210 6.1E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 443 472 6.1E-58 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 SUPERFAMILY SSF58104 235 516 4.32E-72 T 14-09-2016 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 Pfam PF02203 Tar ligand binding domain homologue 2 168 1.2E-17 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 PANTHER PTHR32089 10 518 2.4E-140 T 14-09-2016 PAJ_RS15230 81a315d02e28116cc022df2aed3d8d2f 519 SMART SM00283 268 515 6.9E-85 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS04350 0ce6c75c20070d8cd5af131338b9064b 202 PANTHER PTHR30055:SF30 1 186 8.2E-33 T 14-09-2016 PAJ_RS04350 0ce6c75c20070d8cd5af131338b9064b 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 55 1.2E-10 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS04350 0ce6c75c20070d8cd5af131338b9064b 202 SUPERFAMILY SSF48498 79 187 6.5E-13 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS04350 0ce6c75c20070d8cd5af131338b9064b 202 Gene3D G3DSA:1.10.357.10 6 186 1.7E-27 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS04350 0ce6c75c20070d8cd5af131338b9064b 202 PANTHER PTHR30055 1 186 8.2E-33 T 14-09-2016 PAJ_RS04350 0ce6c75c20070d8cd5af131338b9064b 202 SUPERFAMILY SSF46689 5 69 1.85E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS15165 1f40510e8e9b5e153e1c65ba9c44ef96 297 PANTHER PTHR30269 14 259 6.6E-23 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PAJ_RS15165 1f40510e8e9b5e153e1c65ba9c44ef96 297 Pfam PF01925 Sulfite exporter TauE/SafE 23 248 1.4E-30 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 SMART SM00853 435 570 4.1E-16 T 14-09-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 SUPERFAMILY SSF54211 191 330 3.15E-38 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 Gene3D G3DSA:3.30.565.10 2 204 2.0E-76 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 SMART SM01340 212 330 6.3E-58 T 14-09-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 SUPERFAMILY SSF55874 1 203 1.7E-55 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 14-09-2016 IPR014762 DNA mismatch repair, conserved site PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 8.1E-104 T 14-09-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 PANTHER PTHR10073 3 357 3.9E-158 T 14-09-2016 PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 SUPERFAMILY SSF118116 430 610 4.45E-42 T 14-09-2016 PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 120 4.0E-13 T 14-09-2016 PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 214 329 2.7E-39 T 14-09-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 Pfam PF08676 MutL C terminal dimerisation domain 432 563 7.5E-26 T 14-09-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 Gene3D G3DSA:3.30.230.10 217 328 3.7E-39 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS15400 f990df0528ddc52d367d943330dfc7bc 612 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 609 25.891 T 14-09-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 PAJ_RS15515 5fca57f519719154bfa4e313595bb188 305 Gene3D G3DSA:1.10.10.10 4 87 3.4E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15515 5fca57f519719154bfa4e313595bb188 305 PANTHER PTHR30126 1 305 2.5E-154 T 14-09-2016 PAJ_RS15515 5fca57f519719154bfa4e313595bb188 305 Gene3D G3DSA:3.40.190.10 166 259 1.3E-16 T 14-09-2016 PAJ_RS15515 5fca57f519719154bfa4e313595bb188 305 Gene3D G3DSA:3.40.190.10 92 165 2.0E-7 T 14-09-2016 PAJ_RS15515 5fca57f519719154bfa4e313595bb188 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 3.2E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS15515 5fca57f519719154bfa4e313595bb188 305 SUPERFAMILY SSF46785 4 108 3.0E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15515 5fca57f519719154bfa4e313595bb188 305 PANTHER PTHR30126:SF26 1 305 2.5E-154 T 14-09-2016 PAJ_RS15515 5fca57f519719154bfa4e313595bb188 305 Pfam PF03466 LysR substrate binding domain 90 291 8.9E-36 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS15515 5fca57f519719154bfa4e313595bb188 305 SUPERFAMILY SSF53850 90 296 6.05E-40 T 14-09-2016 PAJ_RS17770 f3cc1ea8c456e7cadac82e9f6743a6de 299 SUPERFAMILY SSF53697 113 279 7.23E-43 T 14-09-2016 PAJ_RS17770 f3cc1ea8c456e7cadac82e9f6743a6de 299 PANTHER PTHR30514 11 284 2.2E-68 T 14-09-2016 PAJ_RS17770 f3cc1ea8c456e7cadac82e9f6743a6de 299 SUPERFAMILY SSF46689 26 92 8.78E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS17770 f3cc1ea8c456e7cadac82e9f6743a6de 299 Gene3D G3DSA:1.10.10.10 26 81 1.7E-11 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS17770 f3cc1ea8c456e7cadac82e9f6743a6de 299 Gene3D G3DSA:3.40.50.10490 82 93 7.7E-42 T 14-09-2016 PAJ_RS17770 f3cc1ea8c456e7cadac82e9f6743a6de 299 Gene3D G3DSA:3.40.50.10490 125 280 7.7E-42 T 14-09-2016 PAJ_RS17770 f3cc1ea8c456e7cadac82e9f6743a6de 299 Pfam PF01418 Helix-turn-helix domain, rpiR family 28 90 4.3E-12 T 14-09-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PAJ_RS17770 f3cc1ea8c456e7cadac82e9f6743a6de 299 PANTHER PTHR30514:SF1 11 284 2.2E-68 T 14-09-2016 PAJ_RS17770 f3cc1ea8c456e7cadac82e9f6743a6de 299 Pfam PF01380 SIS domain 144 273 1.7E-23 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS01675 2cb1b65696ceaaa038ab86fd8402dc83 109 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 12 107 6.3E-38 T 14-09-2016 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 PAJ_RS01675 2cb1b65696ceaaa038ab86fd8402dc83 109 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 19 92 9.8E-19 T 14-09-2016 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 PAJ_RS01675 2cb1b65696ceaaa038ab86fd8402dc83 109 PANTHER PTHR36835 1 109 1.7E-40 T 14-09-2016 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 PRINTS PR00171 Sugar transporter signature 110 129 3.0E-22 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 PRINTS PR00171 Sugar transporter signature 353 374 3.0E-22 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 PRINTS PR00171 Sugar transporter signature 27 37 3.0E-22 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 PRINTS PR00171 Sugar transporter signature 263 273 3.0E-22 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 PRINTS PR00171 Sugar transporter signature 376 388 3.0E-22 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 PANTHER PTHR23500 15 461 5.7E-235 T 14-09-2016 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 ProSitePatterns PS00216 Sugar transport proteins signature 1. 308 324 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 PANTHER PTHR23500:SF119 15 461 5.7E-235 T 14-09-2016 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 Pfam PF00083 Sugar (and other) transporter 19 451 5.0E-137 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 8 448 1.5E-146 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 ProSitePatterns PS00217 Sugar transport proteins signature 2. 115 140 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 Gene3D G3DSA:1.20.1250.20 250 449 1.8E-23 T 14-09-2016 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 Gene3D G3DSA:1.20.1250.20 21 202 2.7E-33 T 14-09-2016 PAJ_RS13435 0bfbaef4d615becdb61aef36fca96dcc 463 SUPERFAMILY SSF103473 12 449 1.15E-78 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS09250 23fdb59c7d376ac111695da8cc95c32e 631 Pfam PF00498 FHA domain 27 93 3.9E-7 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 PAJ_RS09250 23fdb59c7d376ac111695da8cc95c32e 631 SUPERFAMILY SSF49879 16 107 4.35E-13 T 14-09-2016 IPR008984 SMAD/FHA domain GO:0005515 PAJ_RS09250 23fdb59c7d376ac111695da8cc95c32e 631 Gene3D G3DSA:2.60.200.20 15 112 5.1E-9 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 PAJ_RS09250 23fdb59c7d376ac111695da8cc95c32e 631 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 279 618 1.4E-44 T 14-09-2016 IPR017735 Type VI secretion system, FHA domain-containing protein PAJ_RS05110 31cd143e042430e89f1b0d9b1258b7bb 194 PANTHER PTHR10245 8 188 4.9E-33 T 14-09-2016 PAJ_RS05110 31cd143e042430e89f1b0d9b1258b7bb 194 Pfam PF01381 Helix-turn-helix 20 72 5.5E-15 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS05110 31cd143e042430e89f1b0d9b1258b7bb 194 PANTHER PTHR10245:SF21 8 188 4.9E-33 T 14-09-2016 PAJ_RS05110 31cd143e042430e89f1b0d9b1258b7bb 194 SUPERFAMILY SSF47413 12 76 7.78E-17 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS05110 31cd143e042430e89f1b0d9b1258b7bb 194 Gene3D G3DSA:1.10.260.40 9 77 1.4E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS05110 31cd143e042430e89f1b0d9b1258b7bb 194 SUPERFAMILY SSF51182 58 190 2.51E-13 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS05110 31cd143e042430e89f1b0d9b1258b7bb 194 Gene3D G3DSA:2.60.120.10 89 190 4.6E-9 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS05110 31cd143e042430e89f1b0d9b1258b7bb 194 SMART SM00530 17 72 5.4E-15 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS20875 7d59c324f7bdebf1818b35846fd6ae46 422 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 31 404 6.7E-179 T 14-09-2016 IPR017777 ABC transporter, urea, substrate-binding, UrtA PAJ_RS20875 7d59c324f7bdebf1818b35846fd6ae46 422 SUPERFAMILY SSF53822 30 409 9.64E-93 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS20875 7d59c324f7bdebf1818b35846fd6ae46 422 PANTHER PTHR30483 1 420 1.3E-226 T 14-09-2016 PAJ_RS20875 7d59c324f7bdebf1818b35846fd6ae46 422 PANTHER PTHR30483:SF8 1 420 1.3E-226 T 14-09-2016 PAJ_RS20875 7d59c324f7bdebf1818b35846fd6ae46 422 Gene3D G3DSA:3.40.50.2300 146 345 5.4E-74 T 14-09-2016 PAJ_RS20875 7d59c324f7bdebf1818b35846fd6ae46 422 Pfam PF13433 Periplasmic binding protein domain 31 407 1.0E-173 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00943 Copper-transporting ATPase signature 444 458 9.1E-11 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00943 Copper-transporting ATPase signature 506 521 9.1E-11 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00943 Copper-transporting ATPase signature 754 768 9.1E-11 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00943 Copper-transporting ATPase signature 793 807 9.1E-11 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00943 Copper-transporting ATPase signature 239 258 9.1E-11 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00943 Copper-transporting ATPase signature 117 131 9.1E-11 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00943 Copper-transporting ATPase signature 697 714 9.1E-11 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 ProSitePatterns PS01047 Heavy-metal-associated domain. 107 136 - T 14-09-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 254 829 2.6E-183 T 14-09-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 525 531 - T 14-09-2016 IPR018303 P-type ATPase, phosphorylation site PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 SUPERFAMILY SSF56784 521 541 8.71E-62 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 SUPERFAMILY SSF56784 578 826 8.71E-62 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 Pfam PF00122 E1-E2 ATPase 292 513 1.6E-62 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 Gene3D G3DSA:3.30.70.100 4 64 2.1E-15 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 SUPERFAMILY SSF81653 324 421 4.45E-25 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 SUPERFAMILY SSF81665 422 517 4.58E-9 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 SUPERFAMILY SSF81665 290 325 4.58E-9 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 SUPERFAMILY SSF55008 98 169 9.42E-19 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 Pfam PF00702 haloacid dehalogenase-like hydrolase 519 734 1.5E-50 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 Gene3D G3DSA:3.40.1110.10 538 647 5.0E-20 T 14-09-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PANTHER PTHR24093 105 831 0.0 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 236 829 5.2E-186 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 Gene3D G3DSA:3.30.70.100 104 168 4.4E-23 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 293 798 5.8E-94 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 Pfam PF00403 Heavy-metal-associated domain 7 62 8.2E-9 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 Pfam PF00403 Heavy-metal-associated domain 105 161 1.7E-13 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 SUPERFAMILY SSF55008 3 67 1.57E-12 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 289 830 2.0E-115 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PANTHER PTHR24093:SF319 105 831 0.0 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 Gene3D G3DSA:2.70.150.10 275 422 3.7E-28 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 Gene3D G3DSA:3.40.50.1000 648 788 3.6E-59 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 Gene3D G3DSA:3.40.50.1000 496 537 3.6E-59 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 743 755 2.3E-27 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 645 656 2.3E-27 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 720 739 2.3E-27 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 371 385 2.3E-27 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 667 677 2.3E-27 T 14-09-2016 PAJ_RS01935 8951cb8228471c1485a090340f5e81ad 836 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 523 537 2.3E-27 T 14-09-2016 PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 PANTHER PTHR30346:SF7 1 295 5.7E-110 T 14-09-2016 PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 Pfam PF03466 LysR substrate binding domain 89 294 3.9E-47 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 Gene3D G3DSA:3.40.190.10 178 269 2.5E-28 T 14-09-2016 PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.8E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.8E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.8E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.6E-23 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 SUPERFAMILY SSF53850 90 294 6.22E-43 T 14-09-2016 PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 PANTHER PTHR30346 1 295 5.7E-110 T 14-09-2016 PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 Gene3D G3DSA:3.40.190.10 90 177 5.3E-29 T 14-09-2016 PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 Gene3D G3DSA:1.10.10.10 1 83 1.2E-31 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07250 240cf1b1092455908e4c206c3a540003 295 SUPERFAMILY SSF46785 4 88 5.69E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 Pfam PF01795 MraW methylase family 5 310 2.9E-119 T 14-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 PANTHER PTHR11265:SF0 1 313 1.0E-154 T 14-09-2016 PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 Gene3D G3DSA:3.40.50.150 7 110 6.2E-50 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 Gene3D G3DSA:3.40.50.150 216 312 6.2E-50 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 SUPERFAMILY SSF81799 114 213 4.45E-35 T 14-09-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 SUPERFAMILY SSF53335 7 113 6.53E-44 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 SUPERFAMILY SSF53335 213 310 6.53E-44 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 1 310 4.2E-131 T 14-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 311 38.755 T 14-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 Gene3D G3DSA:1.10.150.170 112 215 6.9E-38 T 14-09-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 PIRSF PIRSF004486 1 312 1.1E-100 T 14-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS00285 62bd69ebf2599a371dde6a8891a030d2 313 PANTHER PTHR11265 1 313 1.0E-154 T 14-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 Gene3D G3DSA:2.40.30.10 244 344 4.4E-19 T 14-09-2016 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 Pfam PF00009 Elongation factor Tu GTP binding domain 27 232 1.6E-44 T 14-09-2016 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 SUPERFAMILY SSF52540 21 236 2.1E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 PANTHER PTHR23115 32 54 4.6E-74 T 14-09-2016 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 PANTHER PTHR23115 74 360 4.6E-74 T 14-09-2016 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 Gene3D G3DSA:2.40.30.10 345 435 6.5E-4 T 14-09-2016 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 SUPERFAMILY SSF50447 243 328 4.86E-24 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 SUPERFAMILY SSF50465 335 435 1.63E-28 T 14-09-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 83 98 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 PRINTS PR00315 GTP-binding elongation factor signature 163 172 7.0E-14 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 PRINTS PR00315 GTP-binding elongation factor signature 126 137 7.0E-14 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 PRINTS PR00315 GTP-binding elongation factor signature 110 120 7.0E-14 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 PRINTS PR00315 GTP-binding elongation factor signature 29 42 7.0E-14 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 PRINTS PR00315 GTP-binding elongation factor signature 90 98 7.0E-14 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 19 475 53.294 T 14-09-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 Gene3D G3DSA:3.40.50.300 22 237 7.7E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 34 213 3.9E-14 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS12865 f2a8d46baa0c628d709f557ff93d0470 475 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 28 434 1.9E-207 T 14-09-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 PAJ_RS12695 d039e2fdf063dff80e4b2fda9fde997c 82 PANTHER PTHR12919 1 78 5.8E-41 T 14-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12695 d039e2fdf063dff80e4b2fda9fde997c 82 Pfam PF00886 Ribosomal protein S16 8 68 1.5E-24 T 14-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12695 d039e2fdf063dff80e4b2fda9fde997c 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.144 T 14-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12695 d039e2fdf063dff80e4b2fda9fde997c 82 SUPERFAMILY SSF54565 1 79 1.83E-28 T 14-09-2016 IPR023803 Ribosomal protein S16 domain PAJ_RS12695 d039e2fdf063dff80e4b2fda9fde997c 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.0E-28 T 14-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12695 d039e2fdf063dff80e4b2fda9fde997c 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 14-09-2016 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12695 d039e2fdf063dff80e4b2fda9fde997c 82 Gene3D G3DSA:3.30.1320.10 1 79 4.8E-33 T 14-09-2016 IPR023803 Ribosomal protein S16 domain PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 SUPERFAMILY SSF52540 11 247 4.53E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 Pfam PF09084 NMT1/THI5 like 428 565 9.4E-13 T 14-09-2016 IPR015168 SsuA/THI5-like PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 SUPERFAMILY SSF46689 219 322 8.96E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 219 228 - T 14-09-2016 IPR025944 Sigma-54 interaction domain, conserved site PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 346 627 1.0E-54 T 14-09-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 303 323 1.5E-6 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 286 303 1.5E-6 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 SMART SM00062 345 561 0.0033 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 Gene3D G3DSA:3.40.50.300 14 178 1.2E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 92 107 - T 14-09-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 30 43 - T 14-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 Gene3D G3DSA:1.10.8.60 179 249 8.4E-25 T 14-09-2016 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 Gene3D G3DSA:3.40.190.10 426 550 3.0E-21 T 14-09-2016 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 Gene3D G3DSA:1.10.10.60 262 322 8.7E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 SMART SM00382 26 169 1.7E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 SUPERFAMILY SSF53850 344 579 1.21E-37 T 14-09-2016 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 PANTHER PTHR32071 10 333 4.3E-147 T 14-09-2016 PAJ_RS08600 18468f4e7306714e9414787b394aaf9f 628 Pfam PF00158 Sigma-54 interaction domain 17 172 1.7E-67 T 14-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PAJ_RS02005 2c537fbfc465644fb36e623871bea47c 238 Pfam PF00149 Calcineurin-like phosphoesterase 3 197 2.7E-11 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PAJ_RS02005 2c537fbfc465644fb36e623871bea47c 238 Gene3D G3DSA:3.60.21.10 171 216 1.3E-23 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS02005 2c537fbfc465644fb36e623871bea47c 238 Gene3D G3DSA:3.60.21.10 3 123 1.3E-23 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS02005 2c537fbfc465644fb36e623871bea47c 238 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 4 230 4.8E-104 T 14-09-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 PAJ_RS02005 2c537fbfc465644fb36e623871bea47c 238 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 238 124.931 T 14-09-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 PAJ_RS02005 2c537fbfc465644fb36e623871bea47c 238 SUPERFAMILY SSF56300 3 229 3.99E-31 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS02005 2c537fbfc465644fb36e623871bea47c 238 PANTHER PTHR34990 1 238 1.9E-118 T 14-09-2016 PAJ_RS02005 2c537fbfc465644fb36e623871bea47c 238 PANTHER PTHR34990:SF1 1 238 1.9E-118 T 14-09-2016 PAJ_RS17885 4c30e03e152c7fc79f38539f0b8aa70c 341 Gene3D G3DSA:3.40.50.2300 61 180 4.0E-44 T 14-09-2016 PAJ_RS17885 4c30e03e152c7fc79f38539f0b8aa70c 341 PANTHER PTHR30146 7 337 1.9E-106 T 14-09-2016 PAJ_RS17885 4c30e03e152c7fc79f38539f0b8aa70c 341 Gene3D G3DSA:1.10.260.40 8 60 5.5E-18 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS17885 4c30e03e152c7fc79f38539f0b8aa70c 341 SMART SM00354 7 78 6.0E-24 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS17885 4c30e03e152c7fc79f38539f0b8aa70c 341 SUPERFAMILY SSF47413 7 66 3.13E-11 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS17885 4c30e03e152c7fc79f38539f0b8aa70c 341 PANTHER PTHR30146:SF27 7 337 1.9E-106 T 14-09-2016 PAJ_RS17885 4c30e03e152c7fc79f38539f0b8aa70c 341 Gene3D G3DSA:3.40.50.2300 181 318 1.1E-24 T 14-09-2016 PAJ_RS17885 4c30e03e152c7fc79f38539f0b8aa70c 341 SUPERFAMILY SSF53822 65 323 5.3E-55 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS17885 4c30e03e152c7fc79f38539f0b8aa70c 341 Pfam PF13377 Periplasmic binding protein-like domain 176 337 1.7E-20 T 14-09-2016 PAJ_RS17885 4c30e03e152c7fc79f38539f0b8aa70c 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 55 4.7E-10 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS00895 7657c994be5ec0174fddb5408b5cc95e 155 PANTHER PTHR10642 1 152 8.6E-62 T 14-09-2016 PAJ_RS00895 7657c994be5ec0174fddb5408b5cc95e 155 Pfam PF00075 RNase H 3 141 1.4E-53 T 14-09-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 PAJ_RS00895 7657c994be5ec0174fddb5408b5cc95e 155 Hamap MF_00042 Ribonuclease H [rnhA]. 2 149 38.529 T 14-09-2016 IPR022892 Ribonuclease H GO:0004523 PAJ_RS00895 7657c994be5ec0174fddb5408b5cc95e 155 SUPERFAMILY SSF53098 3 143 9.61E-58 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS00895 7657c994be5ec0174fddb5408b5cc95e 155 Gene3D G3DSA:3.30.420.10 2 148 3.5E-60 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS01390 903dcfcd0b4ad757c69e4e8bdb884da9 104 PANTHER PTHR34382 1 104 4.7E-34 T 14-09-2016 PAJ_RS01390 903dcfcd0b4ad757c69e4e8bdb884da9 104 PIRSF PIRSF000699 1 104 5.7E-31 T 14-09-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS01390 903dcfcd0b4ad757c69e4e8bdb884da9 104 SUPERFAMILY SSF46973 5 99 6.02E-33 T 14-09-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS01390 903dcfcd0b4ad757c69e4e8bdb884da9 104 Gene3D G3DSA:1.20.58.80 4 101 1.5E-36 T 14-09-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS01390 903dcfcd0b4ad757c69e4e8bdb884da9 104 PANTHER PTHR34382:SF2 1 104 4.7E-34 T 14-09-2016 PAJ_RS01390 903dcfcd0b4ad757c69e4e8bdb884da9 104 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 7 98 9.9E-33 T 14-09-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS03580 33ac2e88b75e87cbb2637f2a7bad30d0 203 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 8 201 33.06 T 14-09-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 PAJ_RS03580 33ac2e88b75e87cbb2637f2a7bad30d0 203 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 1 203 8.6E-101 T 14-09-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 PAJ_RS03580 33ac2e88b75e87cbb2637f2a7bad30d0 203 PANTHER PTHR35869 1 203 1.5E-63 T 14-09-2016 PAJ_RS03580 33ac2e88b75e87cbb2637f2a7bad30d0 203 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 33 191 2.0E-58 T 14-09-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like PAJ_RS03580 33ac2e88b75e87cbb2637f2a7bad30d0 203 Gene3D G3DSA:2.50.20.10 23 203 4.6E-61 T 14-09-2016 PAJ_RS03580 33ac2e88b75e87cbb2637f2a7bad30d0 203 SUPERFAMILY SSF89392 23 202 1.33E-55 T 14-09-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX PAJ_RS04365 39155c3c6925044502368b82fc9c63f2 191 Pfam PF04264 YceI-like domain 26 187 9.0E-42 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS04365 39155c3c6925044502368b82fc9c63f2 191 SUPERFAMILY SSF101874 23 191 8.37E-56 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS04365 39155c3c6925044502368b82fc9c63f2 191 Hamap MF_00780 Protein YceI [yceI]. 2 191 43.353 T 14-09-2016 IPR023480 Uncharacterised protein family UPF0312/YceI PAJ_RS04365 39155c3c6925044502368b82fc9c63f2 191 Gene3D G3DSA:2.40.128.110 23 191 1.9E-61 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS04365 39155c3c6925044502368b82fc9c63f2 191 SMART SM00867 25 189 1.4E-71 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS04365 39155c3c6925044502368b82fc9c63f2 191 PANTHER PTHR34406:SF1 1 191 5.4E-64 T 14-09-2016 PAJ_RS04365 39155c3c6925044502368b82fc9c63f2 191 PANTHER PTHR34406 1 191 5.4E-64 T 14-09-2016 PAJ_RS04810 680f54d854fdd7a47632504b3d6a8db8 424 PANTHER PTHR23522 5 419 2.5E-214 T 14-09-2016 PAJ_RS04810 680f54d854fdd7a47632504b3d6a8db8 424 PANTHER PTHR23522:SF1 5 419 2.5E-214 T 14-09-2016 PAJ_RS04810 680f54d854fdd7a47632504b3d6a8db8 424 Gene3D G3DSA:1.20.1250.20 7 188 6.9E-12 T 14-09-2016 PAJ_RS04810 680f54d854fdd7a47632504b3d6a8db8 424 SUPERFAMILY SSF103473 6 409 1.44E-36 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS04810 680f54d854fdd7a47632504b3d6a8db8 424 TIGRFAM TIGR00889 2A0110: nucleoside transporter 5 407 2.3E-158 T 14-09-2016 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 PAJ_RS04810 680f54d854fdd7a47632504b3d6a8db8 424 Gene3D G3DSA:1.20.1250.20 202 410 9.8E-22 T 14-09-2016 PAJ_RS04810 680f54d854fdd7a47632504b3d6a8db8 424 Pfam PF03825 Nucleoside H+ symporter 5 404 4.8E-153 T 14-09-2016 PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 71 99 - T 14-09-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 PANTHER PTHR33910:SF1 1 126 5.3E-36 T 14-09-2016 PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 122 8.6E-21 T 14-09-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 Gene3D G3DSA:1.20.5.1030 64 123 8.5E-26 T 14-09-2016 PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 PANTHER PTHR33910 1 126 5.3E-36 T 14-09-2016 PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 Hamap MF_00422 Protein translocase subunit SecE [secE]. 67 121 13.404 T 14-09-2016 IPR022943 Preprotein translocase subunit SecE PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 123 7.5E-18 T 14-09-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 PRINTS PR01650 Bacterial translocase SecE signature 109 125 1.9E-41 T 14-09-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 PRINTS PR01650 Bacterial translocase SecE signature 89 109 1.9E-41 T 14-09-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 PRINTS PR01650 Bacterial translocase SecE signature 44 65 1.9E-41 T 14-09-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 PAJ_RS18655 1d734cfca8aeba86d4ceabe04840cbe5 127 PRINTS PR01650 Bacterial translocase SecE signature 65 85 1.9E-41 T 14-09-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 PAJ_RS16315 184c5552b0373013b4ada2255bad67a6 438 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 141 158 - T 14-09-2016 IPR006061 Solute-binding family 1, conserved site GO:0005215|GO:0006810 PAJ_RS16315 184c5552b0373013b4ada2255bad67a6 438 SUPERFAMILY SSF53850 27 426 1.68E-78 T 14-09-2016 PAJ_RS16315 184c5552b0373013b4ada2255bad67a6 438 Pfam PF13416 Bacterial extracellular solute-binding protein 46 368 1.2E-43 T 14-09-2016 PAJ_RS16315 184c5552b0373013b4ada2255bad67a6 438 Gene3D G3DSA:3.40.190.10 163 350 2.0E-39 T 14-09-2016 PAJ_RS16315 184c5552b0373013b4ada2255bad67a6 438 PANTHER PTHR30061 6 438 1.4E-171 T 14-09-2016 PAJ_RS16315 184c5552b0373013b4ada2255bad67a6 438 PANTHER PTHR30061:SF7 6 438 1.4E-171 T 14-09-2016 PAJ_RS16315 184c5552b0373013b4ada2255bad67a6 438 Gene3D G3DSA:3.40.190.10 39 162 2.1E-4 T 14-09-2016 PAJ_RS10845 90bbaf75ac104c0f15379dbd1376b985 500 PANTHER PTHR35342:SF4 2 494 3.4E-280 T 14-09-2016 PAJ_RS10845 90bbaf75ac104c0f15379dbd1376b985 500 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 439 2.8E-141 T 14-09-2016 IPR002823 Protein of unknown function DUF112, transmembrane PAJ_RS10845 90bbaf75ac104c0f15379dbd1376b985 500 PANTHER PTHR35342 2 494 3.4E-280 T 14-09-2016 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 PANTHER PTHR32089:SF63 153 514 1.2E-114 T 14-09-2016 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 SUPERFAMILY SSF58104 231 513 1.31E-68 T 14-09-2016 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 Pfam PF00672 HAMP domain 191 258 7.1E-7 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 SMART SM00304 210 263 5.2E-4 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 Gene3D G3DSA:1.10.287.950 278 483 2.9E-57 T 14-09-2016 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 285 314 3.3E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 439 468 3.3E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 362 389 3.3E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 391 420 3.3E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 321 510 1.4E-57 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 SMART SM00283 264 511 4.7E-83 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS05700 8de45d65b9fc9eb4af8f3d97736c31f6 551 PANTHER PTHR32089 153 514 1.2E-114 T 14-09-2016 PAJ_RS06795 5f62b1b4617bd5b3faaed6e0a638baf5 198 PANTHER PTHR13256 3 192 4.0E-31 T 14-09-2016 PAJ_RS06795 5f62b1b4617bd5b3faaed6e0a638baf5 198 Pfam PF13302 Acetyltransferase (GNAT) domain 7 148 1.7E-26 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS06795 5f62b1b4617bd5b3faaed6e0a638baf5 198 Gene3D G3DSA:3.40.630.30 2 175 1.3E-37 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS06795 5f62b1b4617bd5b3faaed6e0a638baf5 198 SUPERFAMILY SSF55729 2 155 9.87E-32 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS06795 5f62b1b4617bd5b3faaed6e0a638baf5 198 PANTHER PTHR13256:SF19 3 192 4.0E-31 T 14-09-2016 PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 Gene3D G3DSA:3.60.20.10 2 239 4.4E-80 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 Pfam PF01380 SIS domain 462 591 2.9E-27 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 Pfam PF01380 SIS domain 289 418 2.6E-32 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 1.4E-264 T 14-09-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 Gene3D G3DSA:3.40.50.10490 245 444 5.5E-65 T 14-09-2016 PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 40.99 T 14-09-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 Pfam PF13522 Glutamine amidotransferase domain 67 184 2.3E-22 T 14-09-2016 PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 SUPERFAMILY SSF56235 2 233 1.72E-74 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 SUPERFAMILY SSF53697 245 609 5.29E-113 T 14-09-2016 PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 PANTHER PTHR10937 1 609 0.0 T 14-09-2016 PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 Gene3D G3DSA:3.40.50.10490 445 609 2.2E-67 T 14-09-2016 PAJ_RS17670 2ed0ee93efad829b9f5b9b4678376ddc 609 PANTHER PTHR10937:SF0 1 609 0.0 T 14-09-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 PAJ_RS17975 e45a1a6ee6fe01d4419b6de3f764dbd9 119 PANTHER PTHR33992 2 116 4.6E-43 T 14-09-2016 PAJ_RS17975 e45a1a6ee6fe01d4419b6de3f764dbd9 119 SUPERFAMILY SSF54211 5 115 3.29E-31 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS17975 e45a1a6ee6fe01d4419b6de3f764dbd9 119 Gene3D G3DSA:3.30.230.10 5 116 1.1E-33 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS17975 e45a1a6ee6fe01d4419b6de3f764dbd9 119 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 115 7.2E-36 T 14-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 PAJ_RS17975 e45a1a6ee6fe01d4419b6de3f764dbd9 119 Pfam PF00825 Ribonuclease P 6 111 1.3E-32 T 14-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 PAJ_RS17975 e45a1a6ee6fe01d4419b6de3f764dbd9 119 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 56 70 - T 14-09-2016 IPR020539 Ribonuclease P, conserved site GO:0004526 PAJ_RS17975 e45a1a6ee6fe01d4419b6de3f764dbd9 119 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 105 8.0E-43 T 14-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 PAJ_RS17975 e45a1a6ee6fe01d4419b6de3f764dbd9 119 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 115 17.671 T 14-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 PAJ_RS17250 c62ba11c11af25f1048db2a03e79ba48 340 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 78 325 2.2E-20 T 14-09-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 PAJ_RS17250 c62ba11c11af25f1048db2a03e79ba48 340 Gene3D G3DSA:3.40.50.2000 2 154 9.3E-24 T 14-09-2016 PAJ_RS17250 c62ba11c11af25f1048db2a03e79ba48 340 SUPERFAMILY SSF53756 2 336 1.29E-55 T 14-09-2016 PAJ_RS17250 c62ba11c11af25f1048db2a03e79ba48 340 Gene3D G3DSA:3.40.50.2000 171 336 4.5E-28 T 14-09-2016 PAJ_RS17250 c62ba11c11af25f1048db2a03e79ba48 340 PANTHER PTHR30160:SF1 1 318 8.4E-35 T 14-09-2016 PAJ_RS17250 c62ba11c11af25f1048db2a03e79ba48 340 PANTHER PTHR30160 1 318 8.4E-35 T 14-09-2016 PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.4E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.4E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.4E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 Gene3D G3DSA:3.40.190.10 81 198 2.9E-24 T 14-09-2016 PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 Gene3D G3DSA:1.10.10.10 1 80 5.5E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.1E-20 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 Pfam PF03466 LysR substrate binding domain 89 293 1.5E-36 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 PANTHER PTHR30126 1 293 4.1E-174 T 14-09-2016 PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 SUPERFAMILY SSF53850 89 293 2.0E-32 T 14-09-2016 PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 SUPERFAMILY SSF46785 1 111 1.21E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 PANTHER PTHR30126:SF14 1 293 4.1E-174 T 14-09-2016 PAJ_RS16865 b1a04ecccd95bcce11ccfa18fd67255c 293 Gene3D G3DSA:3.40.190.10 199 263 6.3E-11 T 14-09-2016 PAJ_RS12420 c7cd7bd4b5e95c16db21b01b93a69e51 253 Pfam PF00005 ABC transporter 19 167 1.1E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS12420 c7cd7bd4b5e95c16db21b01b93a69e51 253 SMART SM00382 27 212 7.1E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS12420 c7cd7bd4b5e95c16db21b01b93a69e51 253 PANTHER PTHR24220:SF309 4 246 6.5E-83 T 14-09-2016 PAJ_RS12420 c7cd7bd4b5e95c16db21b01b93a69e51 253 Gene3D G3DSA:3.40.50.300 4 237 3.7E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12420 c7cd7bd4b5e95c16db21b01b93a69e51 253 PANTHER PTHR24220 4 246 6.5E-83 T 14-09-2016 PAJ_RS12420 c7cd7bd4b5e95c16db21b01b93a69e51 253 SUPERFAMILY SSF52540 3 225 4.79E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PANTHER PTHR24322:SF343 9 128 1.1E-32 T 14-09-2016 PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PANTHER PTHR24322:SF343 148 180 1.1E-32 T 14-09-2016 PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 Pfam PF00106 short chain dehydrogenase 7 187 1.2E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 2.4E-16 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 2.4E-16 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 2.4E-16 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 2.4E-16 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.4E-16 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PANTHER PTHR24322 9 128 1.1E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PANTHER PTHR24322 148 180 1.1E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 Gene3D G3DSA:3.40.50.720 7 226 5.8E-50 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 SUPERFAMILY SSF51735 6 226 5.22E-55 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 3.7E-5 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16500 1170d1cf7db937af0010a6742b9ac08e 226 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 3.7E-5 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03320 5a6cb8e55d47e872a4247ceb79ea0ff6 508 PANTHER PTHR30203 11 505 1.4E-132 T 14-09-2016 PAJ_RS03320 5a6cb8e55d47e872a4247ceb79ea0ff6 508 Pfam PF02321 Outer membrane efflux protein 306 484 1.9E-31 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS03320 5a6cb8e55d47e872a4247ceb79ea0ff6 508 Pfam PF02321 Outer membrane efflux protein 69 274 1.1E-32 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS03320 5a6cb8e55d47e872a4247ceb79ea0ff6 508 Gene3D G3DSA:1.20.1600.10 59 489 9.8E-122 T 14-09-2016 PAJ_RS03320 5a6cb8e55d47e872a4247ceb79ea0ff6 508 PANTHER PTHR30203:SF3 11 505 1.4E-132 T 14-09-2016 PAJ_RS03320 5a6cb8e55d47e872a4247ceb79ea0ff6 508 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 15 486 1.3E-127 T 14-09-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PAJ_RS03320 5a6cb8e55d47e872a4247ceb79ea0ff6 508 SUPERFAMILY SSF56954 3 489 3.79E-118 T 14-09-2016 PAJ_RS17320 512bc0d499f11d41444105628b07a387 213 Gene3D G3DSA:3.40.50.2020 7 212 3.4E-81 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS17320 512bc0d499f11d41444105628b07a387 213 SUPERFAMILY SSF53271 2 211 4.26E-47 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS17320 512bc0d499f11d41444105628b07a387 213 PANTHER PTHR19278:SF36 1 213 6.5E-141 T 14-09-2016 PAJ_RS17320 512bc0d499f11d41444105628b07a387 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 34.538 T 14-09-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS17320 512bc0d499f11d41444105628b07a387 213 Pfam PF00156 Phosphoribosyl transferase domain 47 160 2.0E-11 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PAJ_RS17320 512bc0d499f11d41444105628b07a387 213 PANTHER PTHR19278 1 213 6.5E-141 T 14-09-2016 PAJ_RS17320 512bc0d499f11d41444105628b07a387 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 8.1E-67 T 14-09-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS09100 51ecff8b415072636bfd1e015079ab0b 107 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 87 4.7E-25 T 14-09-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 PAJ_RS09100 51ecff8b415072636bfd1e015079ab0b 107 PANTHER PTHR30505:SF0 1 99 3.5E-30 T 14-09-2016 PAJ_RS09100 51ecff8b415072636bfd1e015079ab0b 107 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 3.6E-15 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS09100 51ecff8b415072636bfd1e015079ab0b 107 PANTHER PTHR30505 1 99 3.5E-30 T 14-09-2016 PAJ_RS09100 51ecff8b415072636bfd1e015079ab0b 107 SUPERFAMILY SSF52794 2 99 3.14E-30 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS09100 51ecff8b415072636bfd1e015079ab0b 107 Gene3D G3DSA:3.40.50.2300 1 99 1.3E-35 T 14-09-2016 PAJ_RS10785 0b793835c87336a0ab411953d8cd2f14 263 SUPERFAMILY SSF110997 184 257 6.8E-14 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS10785 0b793835c87336a0ab411953d8cd2f14 263 Hamap MF_02022 Cell division protein DedD [dedD]. 10 262 27.129 T 14-09-2016 IPR032898 Cell division protein DedD GO:0030428|GO:0032506 PAJ_RS10785 0b793835c87336a0ab411953d8cd2f14 263 Gene3D G3DSA:3.30.70.1070 181 257 1.4E-15 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS10785 0b793835c87336a0ab411953d8cd2f14 263 PANTHER PTHR38687 2 260 2.4E-57 T 14-09-2016 PAJ_RS10785 0b793835c87336a0ab411953d8cd2f14 263 Pfam PF05036 Sporulation related domain 184 257 2.6E-12 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS10785 0b793835c87336a0ab411953d8cd2f14 263 PANTHER PTHR38687:SF1 2 260 2.4E-57 T 14-09-2016 PAJ_RS06995 4379adbd396d652d29c27e4044b1a9d5 153 PRINTS PR00502 NUDIX hydrolase family signature 50 65 1.4E-8 T 14-09-2016 IPR020476 NUDIX hydrolase PAJ_RS06995 4379adbd396d652d29c27e4044b1a9d5 153 PRINTS PR00502 NUDIX hydrolase family signature 36 50 1.4E-8 T 14-09-2016 IPR020476 NUDIX hydrolase PAJ_RS06995 4379adbd396d652d29c27e4044b1a9d5 153 Gene3D G3DSA:3.90.79.10 1 146 7.9E-22 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS06995 4379adbd396d652d29c27e4044b1a9d5 153 ProSitePatterns PS00893 Nudix box signature. 41 62 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PAJ_RS06995 4379adbd396d652d29c27e4044b1a9d5 153 SUPERFAMILY SSF55811 1 129 1.49E-19 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS06995 4379adbd396d652d29c27e4044b1a9d5 153 Pfam PF00293 NUDIX domain 3 128 2.1E-16 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 PANTHER PTHR30537:SF5 2 301 9.9E-85 T 14-09-2016 PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 Gene3D G3DSA:3.40.190.10 184 266 4.7E-8 T 14-09-2016 PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 Gene3D G3DSA:1.10.10.10 10 91 7.3E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 PANTHER PTHR30537 2 301 9.9E-85 T 14-09-2016 PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 SUPERFAMILY SSF53850 95 302 2.35E-36 T 14-09-2016 PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 1.2E-18 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 Gene3D G3DSA:3.40.190.10 100 183 3.6E-20 T 14-09-2016 PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 4.6E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 4.6E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 4.6E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 Pfam PF03466 LysR substrate binding domain 95 299 5.7E-34 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS16665 7157f5a194fc66167c36ba61362576fb 310 SUPERFAMILY SSF46785 10 115 1.93E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05075 278696ed9da63dad61ef6870daed3160 282 Pfam PF12833 Helix-turn-helix domain 184 260 1.2E-18 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS05075 278696ed9da63dad61ef6870daed3160 282 Gene3D G3DSA:2.60.120.10 30 96 5.7E-13 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS05075 278696ed9da63dad61ef6870daed3160 282 Gene3D G3DSA:1.10.10.60 224 259 1.6E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS05075 278696ed9da63dad61ef6870daed3160 282 Gene3D G3DSA:1.10.10.60 157 214 1.2E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS05075 278696ed9da63dad61ef6870daed3160 282 SUPERFAMILY SSF46689 221 259 1.16E-5 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS05075 278696ed9da63dad61ef6870daed3160 282 SUPERFAMILY SSF51182 21 213 2.08E-19 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS05075 278696ed9da63dad61ef6870daed3160 282 PANTHER PTHR11019 14 268 3.7E-89 T 14-09-2016 PAJ_RS05075 278696ed9da63dad61ef6870daed3160 282 PANTHER PTHR11019:SF66 14 268 3.7E-89 T 14-09-2016 PAJ_RS05075 278696ed9da63dad61ef6870daed3160 282 Pfam PF02311 AraC-like ligand binding domain 32 116 1.0E-7 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS05075 278696ed9da63dad61ef6870daed3160 282 SMART SM00342 178 260 8.1E-17 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS19030 f1c28b9a1c175051c410d961c6ebd8ac 316 Pfam PF14305 TupA-like ATPgrasp 57 290 2.6E-40 T 14-09-2016 IPR029465 TupA-like ATPgrasp protein PAJ_RS13590 f50bf7002277b103ed2464677c1c74c9 265 SUPERFAMILY SSF63380 5 139 5.91E-14 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PAJ_RS13590 f50bf7002277b103ed2464677c1c74c9 265 Pfam PF08021 Siderophore-interacting FAD-binding domain 24 135 1.3E-30 T 14-09-2016 IPR013113 FAD-binding 9, siderophore-interacting PAJ_RS13590 f50bf7002277b103ed2464677c1c74c9 265 PANTHER PTHR30157:SF1 4 262 6.3E-72 T 14-09-2016 PAJ_RS13590 f50bf7002277b103ed2464677c1c74c9 265 Gene3D G3DSA:3.40.50.80 138 259 5.4E-17 T 14-09-2016 PAJ_RS13590 f50bf7002277b103ed2464677c1c74c9 265 Gene3D G3DSA:2.40.30.10 13 134 4.8E-32 T 14-09-2016 PAJ_RS13590 f50bf7002277b103ed2464677c1c74c9 265 Pfam PF04954 Siderophore-interacting protein 144 259 1.8E-16 T 14-09-2016 IPR007037 Siderophore-interacting protein PAJ_RS13590 f50bf7002277b103ed2464677c1c74c9 265 PANTHER PTHR30157 4 262 6.3E-72 T 14-09-2016 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 Pfam PF01306 LacY proton/sugar symporter 2 412 2.7E-208 T 14-09-2016 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 PANTHER PTHR23522:SF3 1 412 2.3E-111 T 14-09-2016 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 ProSitePatterns PS00897 LacY family proton/sugar symporters signature 2. 280 294 - T 14-09-2016 IPR018457 LacY/RafB permease family, conserved site GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 6 401 1.4E-207 T 14-09-2016 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 PANTHER PTHR23522 1 412 2.3E-111 T 14-09-2016 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 SUPERFAMILY SSF103473 6 401 4.27E-45 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 ProSitePatterns PS00896 LacY family proton/sugar symporters signature 1. 64 78 - T 14-09-2016 IPR018457 LacY/RafB permease family, conserved site GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 PRINTS PR00174 LacY proton/sugar symporter family signature 68 97 1.9E-109 T 14-09-2016 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 PRINTS PR00174 LacY proton/sugar symporter family signature 346 366 1.9E-109 T 14-09-2016 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 PRINTS PR00174 LacY proton/sugar symporter family signature 145 163 1.9E-109 T 14-09-2016 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 PRINTS PR00174 LacY proton/sugar symporter family signature 103 125 1.9E-109 T 14-09-2016 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 PRINTS PR00174 LacY proton/sugar symporter family signature 214 242 1.9E-109 T 14-09-2016 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 PRINTS PR00174 LacY proton/sugar symporter family signature 260 281 1.9E-109 T 14-09-2016 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 PRINTS PR00174 LacY proton/sugar symporter family signature 315 334 1.9E-109 T 14-09-2016 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 PRINTS PR00174 LacY proton/sugar symporter family signature 284 310 1.9E-109 T 14-09-2016 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 Gene3D G3DSA:1.20.1250.20 209 403 1.5E-41 T 14-09-2016 PAJ_RS19290 56c11e1ec6e1ba5e090e52e1657b721b 414 Gene3D G3DSA:1.20.1250.20 4 189 4.9E-37 T 14-09-2016 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 SUPERFAMILY SSF118215 7 400 8.76E-120 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 34 49 - T 14-09-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 294 317 - T 14-09-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 PANTHER PTHR11958:SF49 5 424 9.3E-266 T 14-09-2016 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 PRINTS PR00173 Glutamate-aspartate symporter signature 190 209 8.2E-30 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 PRINTS PR00173 Glutamate-aspartate symporter signature 143 165 8.2E-30 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 PRINTS PR00173 Glutamate-aspartate symporter signature 326 345 8.2E-30 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 PRINTS PR00173 Glutamate-aspartate symporter signature 72 97 8.2E-30 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 PRINTS PR00173 Glutamate-aspartate symporter signature 5 25 8.2E-30 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 PRINTS PR00173 Glutamate-aspartate symporter signature 291 317 8.2E-30 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 1 427 37.945 T 14-09-2016 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 PANTHER PTHR11958 5 424 9.3E-266 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 Pfam PF00375 Sodium:dicarboxylate symporter family 7 400 2.9E-115 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS18210 4befde55a55cf71916e11e3ede71c172 427 Gene3D G3DSA:1.10.3860.10 5 406 7.9E-118 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS06660 c8d34c631ea554d3380aaecdf38292cd 346 Gene3D G3DSA:3.40.50.2300 54 174 6.5E-30 T 14-09-2016 PAJ_RS06660 c8d34c631ea554d3380aaecdf38292cd 346 Pfam PF13407 Periplasmic binding protein domain 58 311 4.5E-57 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS06660 c8d34c631ea554d3380aaecdf38292cd 346 Gene3D G3DSA:3.40.50.2300 175 331 1.2E-49 T 14-09-2016 PAJ_RS06660 c8d34c631ea554d3380aaecdf38292cd 346 PANTHER PTHR32196:SF9 52 336 1.8E-51 T 14-09-2016 PAJ_RS06660 c8d34c631ea554d3380aaecdf38292cd 346 PANTHER PTHR32196 52 336 1.8E-51 T 14-09-2016 PAJ_RS06660 c8d34c631ea554d3380aaecdf38292cd 346 SUPERFAMILY SSF53822 52 331 2.0E-72 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 SUPERFAMILY SSF50249 318 400 4.11E-29 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 SMART SM00278 480 499 6.0 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 SMART SM00278 446 465 11.0 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 SMART SM00278 512 531 170.0 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 SMART SM00278 544 563 1200.0 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 597 669 2.1E-14 T 14-09-2016 IPR001357 BRCT domain PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 666 7.6E-273 T 14-09-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 PIRSF PIRSF001604 1 672 3.3E-255 T 14-09-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 SUPERFAMILY SSF52113 597 670 1.96E-19 T 14-09-2016 IPR001357 BRCT domain PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Gene3D G3DSA:1.10.150.20 435 502 3.6E-29 T 14-09-2016 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 14-09-2016 IPR018239 NAD-dependent DNA ligase, active site PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 PANTHER PTHR23389 1 533 6.3E-215 T 14-09-2016 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Hamap MF_01588 DNA ligase [ligA]. 2 670 54.669 T 14-09-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Gene3D G3DSA:2.40.50.140 319 391 5.4E-35 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 407 434 2.8E-11 T 14-09-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 3 318 2.2E-139 T 14-09-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 SMART SM00292 596 671 1.8E-13 T 14-09-2016 IPR001357 BRCT domain PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 PANTHER PTHR23389:SF9 1 533 6.3E-215 T 14-09-2016 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Pfam PF14520 Helix-hairpin-helix domain 446 502 8.1E-7 T 14-09-2016 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Pfam PF12826 Helix-hairpin-helix motif 510 573 4.2E-21 T 14-09-2016 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Gene3D G3DSA:1.10.150.20 504 585 2.3E-29 T 14-09-2016 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 14-09-2016 IPR033136 NAD-dependent DNA ligase, conserved site PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Gene3D G3DSA:3.40.50.10190 595 670 5.8E-27 T 14-09-2016 IPR001357 BRCT domain PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Gene3D G3DSA:1.10.287.610 2 67 4.3E-30 T 14-09-2016 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 SUPERFAMILY SSF56091 2 315 9.28E-122 T 14-09-2016 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 SUPERFAMILY SSF47781 404 578 2.89E-59 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Gene3D G3DSA:3.30.470.30 119 252 2.2E-51 T 14-09-2016 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 SMART SM00532 3 448 5.1E-288 T 14-09-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 PAJ_RS11305 fda15a9fe7ae4c796a11f720cfaab778 672 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 322 398 5.2E-36 T 14-09-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 Pfam PF07687 Peptidase dimerisation domain 178 288 2.2E-26 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 377 2.2E-156 T 14-09-2016 IPR010169 Acetylornithine deacetylase (ArgE) GO:0005737|GO:0006526|GO:0008270|GO:0008777|GO:0050897 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154|UniPathway: UPA00068 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 Gene3D G3DSA:3.30.70.360 190 291 6.0E-26 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 Pfam PF01546 Peptidase family M20/M25/M40 76 378 5.5E-32 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 PANTHER PTHR11014:SF75 7 381 1.8E-222 T 14-09-2016 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 PANTHER PTHR11014 7 381 1.8E-222 T 14-09-2016 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 SUPERFAMILY SSF53187 4 180 4.29E-57 T 14-09-2016 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 SUPERFAMILY SSF53187 305 381 4.29E-57 T 14-09-2016 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 75 84 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 Hamap MF_01108 Acetylornithine deacetylase [argE]. 3 382 66.361 T 14-09-2016 IPR010169 Acetylornithine deacetylase (ArgE) GO:0005737|GO:0006526|GO:0008270|GO:0008777|GO:0050897 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154|UniPathway: UPA00068 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 SUPERFAMILY SSF55031 181 296 2.54E-21 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 110 147 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 Gene3D G3DSA:3.40.630.10 323 381 5.2E-61 T 14-09-2016 PAJ_RS17005 c0f6dd69caaca385d1c233b58aed61ae 382 Gene3D G3DSA:3.40.630.10 6 189 5.2E-61 T 14-09-2016 PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 Gene3D G3DSA:3.40.50.970 4 181 1.2E-75 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 Gene3D G3DSA:3.40.50.1220 191 339 1.7E-41 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 14-09-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 SUPERFAMILY SSF52467 166 338 2.29E-26 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 526 1.5E-17 T 14-09-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 PANTHER PTHR18968 1 548 7.3E-224 T 14-09-2016 PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 SUPERFAMILY SSF52518 356 539 1.77E-43 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 PIRSF PIRSF036565 1 550 6.7E-203 T 14-09-2016 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 SUPERFAMILY SSF52518 4 178 9.82E-42 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 PANTHER PTHR18968:SF4 1 548 7.3E-224 T 14-09-2016 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 178 3.4E-33 T 14-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 200 316 3.2E-15 T 14-09-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PAJ_RS11190 06108009e1fa94f36645f2b8ae038b9f 550 Gene3D G3DSA:3.40.50.970 351 538 2.3E-54 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS18795 07f6acc636d33be06a16ac0b83a62f13 309 Hamap MF_00295 Homoserine O-succinyltransferase [metA]. 1 301 51.991 T 14-09-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 PAJ_RS18795 07f6acc636d33be06a16ac0b83a62f13 309 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 1.0E-157 T 14-09-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 PAJ_RS18795 07f6acc636d33be06a16ac0b83a62f13 309 Gene3D G3DSA:3.40.50.880 34 301 2.8E-119 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS18795 07f6acc636d33be06a16ac0b83a62f13 309 PANTHER PTHR20919 2 309 4.7E-158 T 14-09-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 PAJ_RS18795 07f6acc636d33be06a16ac0b83a62f13 309 PANTHER PTHR20919:SF0 2 309 4.7E-158 T 14-09-2016 PAJ_RS18795 07f6acc636d33be06a16ac0b83a62f13 309 SUPERFAMILY SSF52317 17 297 6.75E-100 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS18795 07f6acc636d33be06a16ac0b83a62f13 309 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 9.0E-129 T 14-09-2016 PAJ_RS18795 07f6acc636d33be06a16ac0b83a62f13 309 Pfam PF04204 Homoserine O-succinyltransferase 2 299 1.8E-130 T 14-09-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 PAJ_RS18795 07f6acc636d33be06a16ac0b83a62f13 309 PIRSF PIRSF000450 1 308 2.8E-144 T 14-09-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 PAJ_RS02880 b931090e16229c9f1b0ce905b3216803 350 PANTHER PTHR21225 1 350 9.2E-263 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS02880 b931090e16229c9f1b0ce905b3216803 350 PIRSF PIRSF001361 1 350 4.5E-164 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS02880 b931090e16229c9f1b0ce905b3216803 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 2.3E-175 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS02880 b931090e16229c9f1b0ce905b3216803 350 SUPERFAMILY SSF51569 7 348 5.76E-139 T 14-09-2016 PAJ_RS02880 b931090e16229c9f1b0ce905b3216803 350 PANTHER PTHR21225:SF7 1 350 9.2E-263 T 14-09-2016 PAJ_RS02880 b931090e16229c9f1b0ce905b3216803 350 Pfam PF00793 DAHP synthetase I family 39 338 5.7E-108 T 14-09-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PAJ_RS02880 b931090e16229c9f1b0ce905b3216803 350 Gene3D G3DSA:3.20.20.70 9 349 2.7E-160 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 Gene3D G3DSA:3.20.20.70 2 342 6.5E-110 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 PANTHER PTHR11911:SF97 181 346 3.1E-207 T 14-09-2016 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 PIRSF PIRSF000235 1 346 1.8E-194 T 14-09-2016 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: REACT_1698 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 14-09-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 1.3E-195 T 14-09-2016 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: REACT_1698 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 PANTHER PTHR11911 181 346 3.1E-207 T 14-09-2016 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 PANTHER PTHR11911:SF97 1 163 3.1E-207 T 14-09-2016 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 Hamap MF_00596 GMP reductase [guaC]. 1 345 55.088 T 14-09-2016 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: REACT_1698 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 PANTHER PTHR11911 1 163 3.1E-207 T 14-09-2016 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 SMART SM01240 7 344 1.6E-134 T 14-09-2016 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 1.4E-77 T 14-09-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 PAJ_RS00390 11375cac4c7492e04f191ef5ffbb3b1d 346 SUPERFAMILY SSF51412 6 335 1.13E-98 T 14-09-2016 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 SMART SM00382 59 230 1.8E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 PRINTS PR00142 RecA protein signature 299 316 5.1E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 PRINTS PR00142 RecA protein signature 212 240 5.1E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 PRINTS PR00142 RecA protein signature 167 196 5.1E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 PRINTS PR00142 RecA protein signature 129 158 5.1E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 PRINTS PR00142 RecA protein signature 95 124 5.1E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 PRINTS PR00142 RecA protein signature 245 274 5.1E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 PANTHER PTHR22942:SF1 1 337 1.9E-202 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 PANTHER PTHR22942 1 337 1.9E-202 T 14-09-2016 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 Hamap MF_00268 Protein RecA [recA]. 7 331 50.449 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 ProSitePatterns PS00321 recA signature. 215 223 - T 14-09-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 SUPERFAMILY SSF52540 6 269 1.29E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 Gene3D G3DSA:3.40.50.300 28 269 1.4E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 2.6E-169 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 SUPERFAMILY SSF54752 271 327 6.15E-19 T 14-09-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 Gene3D G3DSA:3.30.250.10 273 328 2.2E-25 T 14-09-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal PAJ_RS12775 1ae2f86c893d4fc306aa0a98005ba10b 356 Pfam PF00154 recA bacterial DNA recombination protein 9 270 4.5E-142 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 SUPERFAMILY SSF50249 3 123 1.03E-51 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.5 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 PANTHER PTHR11652 1 116 6.7E-75 T 14-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 Pfam PF00164 Ribosomal protein S12/S23 9 123 5.8E-43 T 14-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 14-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 2.5E-70 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.1E-60 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.1E-60 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.1E-60 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.1E-60 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.1E-60 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.1E-60 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 PIRSF PIRSF002133 1 124 4.6E-54 T 14-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15895 bcb47a9494a34c5137f33f416c3eb263 124 Gene3D G3DSA:2.40.50.140 1 123 7.2E-65 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 SMART SM00278 556 575 0.31 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 SMART SM00278 588 607 220.0 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 385 542 1.0E-44 T 14-09-2016 IPR001162 UvrC family homology region PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 Pfam PF02151 UvrB/uvrC motif 205 237 2.6E-8 T 14-09-2016 IPR001943 UVR domain GO:0005515 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 SUPERFAMILY SSF47781 523 608 1.37E-17 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 607 29.733 T 14-09-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 SUPERFAMILY SSF82771 18 100 1.96E-24 T 14-09-2016 IPR000305 GIY-YIG nuclease superfamily PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 Pfam PF01541 GIY-YIG catalytic domain 18 93 1.2E-11 T 14-09-2016 IPR000305 GIY-YIG nuclease superfamily PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 Gene3D G3DSA:3.40.1440.10 17 97 1.4E-11 T 14-09-2016 IPR027299 GIY-YIG domain PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 Gene3D G3DSA:4.10.860.10 183 243 3.0E-19 T 14-09-2016 IPR001943 UVR domain GO:0005515 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 SMART SM00465 17 98 2.2E-24 T 14-09-2016 IPR000305 GIY-YIG nuclease superfamily PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 SUPERFAMILY SSF46600 191 243 6.67E-12 T 14-09-2016 IPR001943 UVR domain GO:0005515 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 Gene3D G3DSA:1.10.150.20 555 609 2.5E-22 T 14-09-2016 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 PANTHER PTHR30562 6 608 1.2E-297 T 14-09-2016 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 11 589 1.3E-226 T 14-09-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 Pfam PF14520 Helix-hairpin-helix domain 558 609 3.8E-8 T 14-09-2016 PAJ_RS03980 426d16b782e2c51b12e40173b172acc9 610 PANTHER PTHR30562:SF1 6 608 1.2E-297 T 14-09-2016 PAJ_RS04835 a8026255fb8f9928f98e51c8250cb454 82 Gene3D G3DSA:1.10.1470.10 4 59 6.1E-10 T 14-09-2016 IPR008462 CsbD-like PAJ_RS04835 a8026255fb8f9928f98e51c8250cb454 82 Pfam PF05957 Bacterial protein of unknown function (DUF883) 8 82 8.0E-12 T 14-09-2016 IPR010279 Protein of unknown function DUF883, ElaB PAJ_RS04835 a8026255fb8f9928f98e51c8250cb454 82 SUPERFAMILY SSF69047 4 58 1.7E-6 T 14-09-2016 IPR008462 CsbD-like PAJ_RS19515 96a14b1cb87fe9bf0811d568dfb1c06e 259 SUPERFAMILY SSF53474 35 251 4.61E-28 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS19515 96a14b1cb87fe9bf0811d568dfb1c06e 259 Pfam PF12697 Alpha/beta hydrolase family 36 247 4.5E-19 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS19515 96a14b1cb87fe9bf0811d568dfb1c06e 259 PANTHER PTHR10992:SF832 33 255 3.0E-27 T 14-09-2016 PAJ_RS19515 96a14b1cb87fe9bf0811d568dfb1c06e 259 PANTHER PTHR10992 33 255 3.0E-27 T 14-09-2016 PAJ_RS19515 96a14b1cb87fe9bf0811d568dfb1c06e 259 Gene3D G3DSA:3.40.50.1820 35 254 3.8E-37 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS06560 985478cdc7cdf8642d31770b63a9c95f 305 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 3 303 1.4E-121 T 14-09-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 PAJ_RS06560 985478cdc7cdf8642d31770b63a9c95f 305 SUPERFAMILY SSF56281 1 303 1.87E-62 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS06560 985478cdc7cdf8642d31770b63a9c95f 305 Gene3D G3DSA:3.60.15.10 1 304 9.4E-121 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS06560 985478cdc7cdf8642d31770b63a9c95f 305 Pfam PF12706 Beta-lactamase superfamily domain 51 270 3.6E-41 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS06560 985478cdc7cdf8642d31770b63a9c95f 305 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 305 159.511 T 14-09-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 Gene3D G3DSA:1.10.10.10 1 81 3.2E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.4E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.4E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.4E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 1.9E-15 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 Pfam PF03466 LysR substrate binding domain 92 292 1.3E-41 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 Gene3D G3DSA:3.40.190.10 185 261 8.2E-31 T 14-09-2016 PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 PANTHER PTHR30126:SF6 1 309 1.3E-222 T 14-09-2016 PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 SUPERFAMILY SSF53850 91 322 6.39E-45 T 14-09-2016 PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 Gene3D G3DSA:3.40.190.10 92 184 4.1E-20 T 14-09-2016 PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 SUPERFAMILY SSF46785 1 85 1.56E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07635 54ba029e39ab6820cecda404f8f9483b 324 PANTHER PTHR30126 1 309 1.3E-222 T 14-09-2016 PAJ_RS01035 8f2bec7c266b460ae818521d04242c5a 411 Gene3D G3DSA:3.90.1150.10 285 393 4.0E-34 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS01035 8f2bec7c266b460ae818521d04242c5a 411 PIRSF PIRSF000524 8 410 1.0E-104 T 14-09-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 PAJ_RS01035 8f2bec7c266b460ae818521d04242c5a 411 Gene3D G3DSA:3.40.640.10 25 284 3.6E-59 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS01035 8f2bec7c266b460ae818521d04242c5a 411 PANTHER PTHR21152 243 409 3.4E-88 T 14-09-2016 PAJ_RS01035 8f2bec7c266b460ae818521d04242c5a 411 PANTHER PTHR21152 9 227 3.4E-88 T 14-09-2016 PAJ_RS01035 8f2bec7c266b460ae818521d04242c5a 411 SUPERFAMILY SSF53383 8 392 1.41E-88 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS01035 8f2bec7c266b460ae818521d04242c5a 411 Pfam PF00266 Aminotransferase class-V 16 359 2.8E-26 T 14-09-2016 IPR000192 Aminotransferase class V domain PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 PIRSF PIRSF037420 1 359 9.7E-134 T 14-09-2016 IPR017200 Coenzyme PQQ synthesis protein E UniPathway: UPA00539 PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 PANTHER PTHR11228 8 347 1.2E-112 T 14-09-2016 PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 253 337 3.2E-7 T 14-09-2016 IPR023885 4Fe4S-binding SPASM domain PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 18 29 - T 14-09-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 Pfam PF13394 4Fe-4S single cluster domain 21 83 3.6E-6 T 14-09-2016 PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 Pfam PF13186 Iron-sulfur cluster-binding domain 245 310 4.2E-7 T 14-09-2016 IPR023885 4Fe4S-binding SPASM domain PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 Pfam PF04055 Radical SAM superfamily 18 173 2.7E-23 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 SMART SM00729 12 213 3.1E-4 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 PANTHER PTHR11228:SF32 8 347 1.2E-112 T 14-09-2016 PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 Gene3D G3DSA:3.20.20.70 10 328 7.9E-72 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 378 194.437 T 14-09-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 SUPERFAMILY SSF102114 9 319 6.28E-78 T 14-09-2016 PAJ_RS06575 56ccb9b9786956f26fafb2ac0520e16a 380 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 7 367 3.1E-188 T 14-09-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 PAJ_RS00515 ab0e89156860370ad3d1c87367644dc7 115 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 24 106 1.0E-10 T 14-09-2016 IPR019114 Chaperone lipoprotein, PulS/OutS-like PAJ_RS00515 ab0e89156860370ad3d1c87367644dc7 115 ProDom PD074041 YACC EXPORTED PRECURSOR SIGNAL PERIPLASMIC Y0776 SIMILAR ECS0126 STY0189 ESCHERICHIA 1 115 1.0E-42 T 14-09-2016 PAJ_RS18040 c6a64ee5b3ebce3e4b3c515b2a959918 307 Hamap MF_00611 Protein FdhE [fdhE]. 3 306 47.802 T 14-09-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 PAJ_RS18040 c6a64ee5b3ebce3e4b3c515b2a959918 307 SUPERFAMILY SSF144020 24 306 2.35E-94 T 14-09-2016 IPR024064 FdhE-like PAJ_RS18040 c6a64ee5b3ebce3e4b3c515b2a959918 307 PANTHER PTHR37689 4 307 5.3E-104 T 14-09-2016 PAJ_RS18040 c6a64ee5b3ebce3e4b3c515b2a959918 307 PANTHER PTHR37689:SF1 4 307 5.3E-104 T 14-09-2016 PAJ_RS18040 c6a64ee5b3ebce3e4b3c515b2a959918 307 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 305 6.6E-131 T 14-09-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 PAJ_RS18040 c6a64ee5b3ebce3e4b3c515b2a959918 307 PIRSF PIRSF018296 1 307 3.2E-129 T 14-09-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 PAJ_RS18040 c6a64ee5b3ebce3e4b3c515b2a959918 307 Gene3D G3DSA:3.90.1670.10 24 306 2.2E-103 T 14-09-2016 IPR024064 FdhE-like PAJ_RS18040 c6a64ee5b3ebce3e4b3c515b2a959918 307 Pfam PF04216 Protein involved in formate dehydrogenase formation 21 304 8.9E-113 T 14-09-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 PAJ_RS12290 02d5bceab02919a94ff12b2d6e5dcba7 450 PANTHER PTHR11662:SF3 22 437 2.5E-138 T 14-09-2016 PAJ_RS12290 02d5bceab02919a94ff12b2d6e5dcba7 450 Gene3D G3DSA:1.20.1250.20 41 238 7.1E-42 T 14-09-2016 PAJ_RS12290 02d5bceab02919a94ff12b2d6e5dcba7 450 Pfam PF07690 Major Facilitator Superfamily 47 381 2.8E-36 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS12290 02d5bceab02919a94ff12b2d6e5dcba7 450 PANTHER PTHR11662 22 437 2.5E-138 T 14-09-2016 PAJ_RS12290 02d5bceab02919a94ff12b2d6e5dcba7 450 SUPERFAMILY SSF103473 30 446 1.29E-76 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS12290 02d5bceab02919a94ff12b2d6e5dcba7 450 Gene3D G3DSA:1.20.1250.20 260 442 1.6E-17 T 14-09-2016 PAJ_RS18855 67e179408c0c12b23cc30a14f2b05adf 215 Pfam PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF 13 210 9.0E-69 T 14-09-2016 IPR021308 Group 4 capsule polysaccharide formation lipoprotein GfcB PAJ_RS18855 67e179408c0c12b23cc30a14f2b05adf 215 SUPERFAMILY SSF159270 19 213 1.44E-61 T 14-09-2016 IPR023373 YmcC-like domain PAJ_RS18855 67e179408c0c12b23cc30a14f2b05adf 215 Gene3D G3DSA:2.40.360.10 16 214 1.0E-80 T 14-09-2016 IPR023373 YmcC-like domain PAJ_RS12670 aab53269e7e500a9768aed912cc4fdcb 176 SUPERFAMILY SSF55729 2 170 1.72E-32 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS12670 aab53269e7e500a9768aed912cc4fdcb 176 Gene3D G3DSA:3.40.630.30 4 169 4.1E-33 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS12670 aab53269e7e500a9768aed912cc4fdcb 176 PANTHER PTHR13256 5 147 1.4E-21 T 14-09-2016 PAJ_RS12670 aab53269e7e500a9768aed912cc4fdcb 176 Pfam PF13302 Acetyltransferase (GNAT) domain 8 147 2.6E-20 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS09045 bb971172154d655c062f691424bead9c 412 Gene3D G3DSA:1.20.1250.20 230 405 2.0E-9 T 14-09-2016 PAJ_RS09045 bb971172154d655c062f691424bead9c 412 Gene3D G3DSA:1.20.1250.20 15 202 1.4E-22 T 14-09-2016 PAJ_RS09045 bb971172154d655c062f691424bead9c 412 SUPERFAMILY SSF103473 15 406 4.05E-43 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS09045 bb971172154d655c062f691424bead9c 412 Pfam PF05977 Transmembrane secretion effector 12 406 6.5E-46 T 14-09-2016 IPR010290 Transmembrane secretion effector PAJ_RS09045 bb971172154d655c062f691424bead9c 412 PANTHER PTHR23513 12 409 9.0E-121 T 14-09-2016 PAJ_RS09045 bb971172154d655c062f691424bead9c 412 PANTHER PTHR23513:SF9 12 409 9.0E-121 T 14-09-2016 PAJ_RS09665 c2ca7a84a1a8fe19b25c5489167837f8 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 248 255 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS09665 c2ca7a84a1a8fe19b25c5489167837f8 477 Gene3D G3DSA:3.40.605.10 3 262 5.8E-88 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS09665 c2ca7a84a1a8fe19b25c5489167837f8 477 PANTHER PTHR11699 4 470 2.6E-195 T 14-09-2016 PAJ_RS09665 c2ca7a84a1a8fe19b25c5489167837f8 477 Pfam PF00171 Aldehyde dehydrogenase family 14 473 7.5E-162 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS09665 c2ca7a84a1a8fe19b25c5489167837f8 477 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 276 287 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS09665 c2ca7a84a1a8fe19b25c5489167837f8 477 SUPERFAMILY SSF53720 2 476 2.23E-156 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS09665 c2ca7a84a1a8fe19b25c5489167837f8 477 Gene3D G3DSA:3.40.309.10 263 437 2.0E-67 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS00620 e1c5eb664d66de7c24aea0b2184957de 659 PANTHER PTHR30472 243 659 2.0E-162 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS00620 e1c5eb664d66de7c24aea0b2184957de 659 Gene3D G3DSA:1.10.3470.10 4 326 2.3E-79 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS00620 e1c5eb664d66de7c24aea0b2184957de 659 PANTHER PTHR30472:SF16 243 659 2.0E-162 T 14-09-2016 PAJ_RS00620 e1c5eb664d66de7c24aea0b2184957de 659 SUPERFAMILY SSF81345 5 324 1.96E-63 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS00620 e1c5eb664d66de7c24aea0b2184957de 659 SUPERFAMILY SSF81345 344 657 2.35E-68 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS00620 e1c5eb664d66de7c24aea0b2184957de 659 Gene3D G3DSA:1.10.3470.10 344 658 4.3E-76 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS00620 e1c5eb664d66de7c24aea0b2184957de 659 Pfam PF01032 FecCD transport family 384 657 7.3E-70 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS00620 e1c5eb664d66de7c24aea0b2184957de 659 Pfam PF01032 FecCD transport family 16 322 1.5E-69 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS04455 8f5fff158b392a5cb509fadd6a6b37dc 134 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 134 1.1E-50 T 14-09-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 PAJ_RS04455 8f5fff158b392a5cb509fadd6a6b37dc 134 PANTHER PTHR30435 1 134 7.5E-65 T 14-09-2016 PAJ_RS04455 8f5fff158b392a5cb509fadd6a6b37dc 134 Pfam PF00460 Flagella basal body rod protein 7 37 6.9E-10 T 14-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PAJ_RS04455 8f5fff158b392a5cb509fadd6a6b37dc 134 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 131 4.7E-10 T 14-09-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain PAJ_RS04455 8f5fff158b392a5cb509fadd6a6b37dc 134 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 14-09-2016 IPR019776 Flagellar basal body rod protein, conserved site PAJ_RS04455 8f5fff158b392a5cb509fadd6a6b37dc 134 PANTHER PTHR30435:SF2 1 134 7.5E-65 T 14-09-2016 PAJ_RS03595 149bde70274b1de16a4d9f4d7dfdfc89 384 Gene3D G3DSA:1.20.1250.20 200 373 1.2E-18 T 14-09-2016 PAJ_RS03595 149bde70274b1de16a4d9f4d7dfdfc89 384 Gene3D G3DSA:1.20.1250.20 6 176 5.5E-15 T 14-09-2016 PAJ_RS03595 149bde70274b1de16a4d9f4d7dfdfc89 384 PANTHER PTHR23521 2 383 1.1E-191 T 14-09-2016 PAJ_RS03595 149bde70274b1de16a4d9f4d7dfdfc89 384 Pfam PF07690 Major Facilitator Superfamily 11 285 1.2E-18 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS03595 149bde70274b1de16a4d9f4d7dfdfc89 384 SUPERFAMILY SSF103473 6 373 2.49E-40 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS03595 149bde70274b1de16a4d9f4d7dfdfc89 384 PANTHER PTHR23521:SF1 2 383 1.1E-191 T 14-09-2016 PAJ_RS03855 4bc964b621049529006e24679dac50f9 684 Gene3D G3DSA:3.40.50.300 589 675 8.6E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03855 4bc964b621049529006e24679dac50f9 684 Pfam PF13361 UvrD-like helicase C-terminal domain 572 661 3.4E-12 T 14-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 PAJ_RS03855 4bc964b621049529006e24679dac50f9 684 PANTHER PTHR11070:SF26 99 677 2.3E-289 T 14-09-2016 PAJ_RS03855 4bc964b621049529006e24679dac50f9 684 Pfam PF00580 UvrD/REP helicase N-terminal domain 197 488 1.0E-38 T 14-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 PAJ_RS03855 4bc964b621049529006e24679dac50f9 684 Gene3D G3DSA:3.40.50.300 395 492 9.4E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03855 4bc964b621049529006e24679dac50f9 684 Gene3D G3DSA:3.40.50.300 196 329 9.4E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03855 4bc964b621049529006e24679dac50f9 684 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 2 164 2.1E-65 T 14-09-2016 IPR022161 DNA helicase IV, N-terminal domain PAJ_RS03855 4bc964b621049529006e24679dac50f9 684 PANTHER PTHR11070 99 677 2.3E-289 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PAJ_RS03855 4bc964b621049529006e24679dac50f9 684 SUPERFAMILY SSF52540 195 348 3.3E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03855 4bc964b621049529006e24679dac50f9 684 SUPERFAMILY SSF52540 385 675 3.3E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19305 53754882c9dd674a8f28064c85ca2abb 469 SUPERFAMILY SSF49899 337 467 1.58E-19 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain PAJ_RS19305 53754882c9dd674a8f28064c85ca2abb 469 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 15 443 8.9E-158 T 14-09-2016 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26|UniPathway: UPA00238 PAJ_RS19305 53754882c9dd674a8f28064c85ca2abb 469 Gene3D G3DSA:2.60.120.560 334 467 7.1E-19 T 14-09-2016 IPR013189 Glycosyl hydrolase family 32, C-terminal PAJ_RS19305 53754882c9dd674a8f28064c85ca2abb 469 SMART SM00640 31 432 4.4E-127 T 14-09-2016 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 PAJ_RS19305 53754882c9dd674a8f28064c85ca2abb 469 PANTHER PTHR30175 21 443 3.5E-88 T 14-09-2016 PAJ_RS19305 53754882c9dd674a8f28064c85ca2abb 469 SUPERFAMILY SSF75005 23 337 1.21E-98 T 14-09-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain PAJ_RS19305 53754882c9dd674a8f28064c85ca2abb 469 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 31 336 2.2E-92 T 14-09-2016 IPR013148 Glycosyl hydrolase family 32, N-terminal PAJ_RS19305 53754882c9dd674a8f28064c85ca2abb 469 Gene3D G3DSA:2.115.10.20 36 333 2.0E-20 T 14-09-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain PAJ_RS19305 53754882c9dd674a8f28064c85ca2abb 469 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 31 44 - T 14-09-2016 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 PAJ_RS19305 53754882c9dd674a8f28064c85ca2abb 469 PANTHER PTHR30175:SF8 21 443 3.5E-88 T 14-09-2016 PAJ_RS15855 813ef58911a24bf091d9d7124eac55d5 209 PANTHER PTHR11229 1 208 6.8E-121 T 14-09-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15855 813ef58911a24bf091d9d7124eac55d5 209 Gene3D G3DSA:4.10.960.10 77 157 3.2E-34 T 14-09-2016 PAJ_RS15855 813ef58911a24bf091d9d7124eac55d5 209 SUPERFAMILY SSF50447 1 208 2.03E-80 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS15855 813ef58911a24bf091d9d7124eac55d5 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 40.875 T 14-09-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15855 813ef58911a24bf091d9d7124eac55d5 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 6.0E-92 T 14-09-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15855 813ef58911a24bf091d9d7124eac55d5 209 Pfam PF00297 Ribosomal protein L3 98 182 3.0E-14 T 14-09-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15855 813ef58911a24bf091d9d7124eac55d5 209 Gene3D G3DSA:2.40.30.10 3 32 5.8E-8 T 14-09-2016 PAJ_RS15855 813ef58911a24bf091d9d7124eac55d5 209 Gene3D G3DSA:2.40.30.10 158 207 5.8E-8 T 14-09-2016 PAJ_RS15855 813ef58911a24bf091d9d7124eac55d5 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 14-09-2016 IPR019926 Ribosomal protein L3, conserved site PAJ_RS08940 a33aa9f0b399ec1ca68fca5de9091dd1 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 195 4.3E-17 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS08940 a33aa9f0b399ec1ca68fca5de9091dd1 211 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS08940 a33aa9f0b399ec1ca68fca5de9091dd1 211 SUPERFAMILY SSF46894 130 190 4.42E-10 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS08940 a33aa9f0b399ec1ca68fca5de9091dd1 211 Hamap MF_00982 Transcriptional regulatory protein RcsA [rcsA]. 1 211 51.548 T 14-09-2016 IPR030866 Transcriptional regulatory protein RcsA GO:0006355 PAJ_RS08940 a33aa9f0b399ec1ca68fca5de9091dd1 211 Gene3D G3DSA:1.10.10.10 138 192 1.2E-9 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08940 a33aa9f0b399ec1ca68fca5de9091dd1 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 1.6E-7 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS08940 a33aa9f0b399ec1ca68fca5de9091dd1 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 1.6E-7 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS08940 a33aa9f0b399ec1ca68fca5de9091dd1 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 1.6E-7 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS08940 a33aa9f0b399ec1ca68fca5de9091dd1 211 SMART SM00421 139 196 2.9E-10 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS18185 1fb4dd4ef61f0b304b5f77b0735760f4 935 Pfam PF03170 Bacterial cellulose synthase subunit 221 828 3.2E-199 T 14-09-2016 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18185 1fb4dd4ef61f0b304b5f77b0735760f4 935 PANTHER PTHR39083:SF1 180 929 9.8E-54 T 14-09-2016 PAJ_RS18185 1fb4dd4ef61f0b304b5f77b0735760f4 935 PANTHER PTHR39083 180 929 9.8E-54 T 14-09-2016 PAJ_RS18185 1fb4dd4ef61f0b304b5f77b0735760f4 935 PRINTS PR01440 Cellulose synthase subunit B signature 540 561 2.0E-30 T 14-09-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18185 1fb4dd4ef61f0b304b5f77b0735760f4 935 PRINTS PR01440 Cellulose synthase subunit B signature 869 889 2.0E-30 T 14-09-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18185 1fb4dd4ef61f0b304b5f77b0735760f4 935 PRINTS PR01440 Cellulose synthase subunit B signature 669 688 2.0E-30 T 14-09-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18185 1fb4dd4ef61f0b304b5f77b0735760f4 935 PRINTS PR01440 Cellulose synthase subunit B signature 621 640 2.0E-30 T 14-09-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18185 1fb4dd4ef61f0b304b5f77b0735760f4 935 PRINTS PR01440 Cellulose synthase subunit B signature 247 268 2.0E-30 T 14-09-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18185 1fb4dd4ef61f0b304b5f77b0735760f4 935 PRINTS PR01440 Cellulose synthase subunit B signature 378 401 2.0E-30 T 14-09-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18185 1fb4dd4ef61f0b304b5f77b0735760f4 935 PRINTS PR01440 Cellulose synthase subunit B signature 458 479 2.0E-30 T 14-09-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 489 7.7E-201 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 489 90.799 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 PIRSF PIRSF000110 1 491 1.2E-181 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 188 488 3.8E-116 T 14-09-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 PANTHER PTHR23429 1 489 8.2E-224 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 218 235 1.3E-46 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 166 194 1.3E-46 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 236 252 1.3E-46 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 142 155 1.3E-46 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 327 353 1.3E-46 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 SUPERFAMILY SSF55347 176 488 1.18E-112 T 14-09-2016 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 PANTHER PTHR23429:SF0 1 489 8.2E-224 T 14-09-2016 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 Gene3D G3DSA:3.40.50.720 7 185 3.6E-61 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 SUPERFAMILY SSF51735 4 189 6.3E-57 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 176 182 - T 14-09-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 186 1.7E-58 T 14-09-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PAJ_RS08330 adceddf705ca3a74ea8d30e8ef171ddc 491 Gene3D G3DSA:3.30.360.10 186 487 3.1E-120 T 14-09-2016 PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PANTHER PTHR24322 26 154 2.0E-47 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PANTHER PTHR24322:SF328 170 206 2.0E-47 T 14-09-2016 PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 SUPERFAMILY SSF51735 21 263 2.49E-77 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 31 262 4.9E-63 T 14-09-2016 PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PANTHER PTHR24322:SF328 26 154 2.0E-47 T 14-09-2016 PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 157 185 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 Gene3D G3DSA:3.40.50.720 16 264 5.3E-79 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 23 40 1.5E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 225 245 1.5E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 189 1.5E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 1.5E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 96 107 1.5E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 160 1.5E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PANTHER PTHR24322 170 206 2.0E-47 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 4.6E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 4.6E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05620 fc3b65c24b32ec404452084432a06b2d 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 4.6E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 Gene3D G3DSA:3.40.50.720 169 290 1.0E-31 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 Pfam PF00107 Zinc-binding dehydrogenase 177 306 1.1E-23 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 SUPERFAMILY SSF51735 141 312 1.12E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 PANTHER PTHR11695:SF429 12 343 8.8E-98 T 14-09-2016 PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 SMART SM00829 10 343 1.4E-4 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 Gene3D G3DSA:3.90.180.10 1 168 1.8E-50 T 14-09-2016 IPR011032 GroES-like PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 126 9.1E-32 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 PANTHER PTHR11695 12 343 8.8E-98 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 SUPERFAMILY SSF50129 1 145 2.28E-46 T 14-09-2016 IPR011032 GroES-like PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 SUPERFAMILY SSF50129 316 343 2.28E-46 T 14-09-2016 IPR011032 GroES-like PAJ_RS20520 dd64bfc1d06fe2b7a40e90264e0ea93e 346 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 14-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PAJ_RS17545 34bd44f2b729fd6ee36bca03aec5826d 291 Gene3D G3DSA:3.40.50.2300 141 291 1.1E-54 T 14-09-2016 PAJ_RS17545 34bd44f2b729fd6ee36bca03aec5826d 291 PANTHER PTHR32196:SF9 5 291 1.5E-109 T 14-09-2016 PAJ_RS17545 34bd44f2b729fd6ee36bca03aec5826d 291 Gene3D G3DSA:3.40.50.2300 23 140 1.2E-43 T 14-09-2016 PAJ_RS17545 34bd44f2b729fd6ee36bca03aec5826d 291 SUPERFAMILY SSF53822 5 291 1.13E-87 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS17545 34bd44f2b729fd6ee36bca03aec5826d 291 Pfam PF13407 Periplasmic binding protein domain 25 277 5.4E-60 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS17545 34bd44f2b729fd6ee36bca03aec5826d 291 PANTHER PTHR32196 5 291 1.5E-109 T 14-09-2016 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 SMART SM00283 266 513 4.1E-80 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 1.8E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 26 1.8E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 1.8E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 1.8E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 1.8E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 182 3.0E-13 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 Gene3D G3DSA:1.10.287.950 280 485 8.3E-57 T 14-09-2016 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 512 1.1E-59 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 PANTHER PTHR32089:SF48 135 514 3.9E-113 T 14-09-2016 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 PANTHER PTHR32089 135 514 3.9E-113 T 14-09-2016 PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 291 313 - T 14-09-2016 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site PAJ_RS08280 66bed70135f6018b6140a1723f63aa61 514 SUPERFAMILY SSF58104 244 514 4.8E-67 T 14-09-2016 PAJ_RS07505 296ce3a2e2358498092d08386bee45f8 542 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 455 4.4E-87 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS07505 296ce3a2e2358498092d08386bee45f8 542 PANTHER PTHR30290:SF28 28 541 0.0 T 14-09-2016 PAJ_RS07505 296ce3a2e2358498092d08386bee45f8 542 PIRSF PIRSF002741 2 540 4.2E-96 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS07505 296ce3a2e2358498092d08386bee45f8 542 PANTHER PTHR30290 28 541 0.0 T 14-09-2016 PAJ_RS07505 296ce3a2e2358498092d08386bee45f8 542 Gene3D G3DSA:3.90.76.10 42 221 1.5E-43 T 14-09-2016 PAJ_RS07505 296ce3a2e2358498092d08386bee45f8 542 Gene3D G3DSA:3.10.105.10 291 506 3.9E-53 T 14-09-2016 PAJ_RS07505 296ce3a2e2358498092d08386bee45f8 542 SUPERFAMILY SSF53850 34 535 7.96E-134 T 14-09-2016 PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 SUPERFAMILY SSF49354 25 153 5.01E-37 T 14-09-2016 IPR008962 PapD-like PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 PANTHER PTHR30251:SF8 1 253 2.2E-88 T 14-09-2016 PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 180 243 2.4E-13 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 PRINTS PR00969 Pili chaperone signature 109 126 8.6E-29 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 PRINTS PR00969 Pili chaperone signature 30 39 8.6E-29 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 PRINTS PR00969 Pili chaperone signature 175 190 8.6E-29 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 PRINTS PR00969 Pili chaperone signature 136 151 8.6E-29 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 PRINTS PR00969 Pili chaperone signature 80 101 8.6E-29 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 Gene3D G3DSA:2.60.40.1070 156 245 3.4E-12 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 30 153 3.6E-41 T 14-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 Gene3D G3DSA:2.60.40.360 30 153 5.7E-41 T 14-09-2016 IPR008962 PapD-like PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 SUPERFAMILY SSF49584 160 250 2.62E-11 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS04750 6e4bf396cdecb3bea08bc26f1af87b4d 253 PANTHER PTHR30251 1 253 2.2E-88 T 14-09-2016 PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 Gene3D G3DSA:3.40.50.300 5 232 8.3E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 SMART SM00382 34 222 3.2E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 SMART SM00382 285 479 0.28 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 PANTHER PTHR24220 11 385 9.1E-232 T 14-09-2016 PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 PANTHER PTHR24220:SF440 11 385 9.1E-232 T 14-09-2016 PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 Gene3D G3DSA:3.40.50.300 270 490 4.5E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 Pfam PF00005 ABC transporter 25 174 4.5E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 Pfam PF00005 ABC transporter 278 430 1.2E-18 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 SUPERFAMILY SSF52540 270 489 3.35E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS06245 a7846fa34128602e2af9ab7b7aaa0334 506 SUPERFAMILY SSF52540 8 232 7.43E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00380 65393f30920db0f04ddc0bdd54cd5161 247 Gene3D G3DSA:1.10.3900.10 13 173 4.1E-63 T 14-09-2016 PAJ_RS00380 65393f30920db0f04ddc0bdd54cd5161 247 SUPERFAMILY SSF160950 3 247 1.96E-89 T 14-09-2016 PAJ_RS00380 65393f30920db0f04ddc0bdd54cd5161 247 PANTHER PTHR39455:SF1 1 247 1.1E-109 T 14-09-2016 PAJ_RS00380 65393f30920db0f04ddc0bdd54cd5161 247 PANTHER PTHR39455 1 247 1.1E-109 T 14-09-2016 PAJ_RS00380 65393f30920db0f04ddc0bdd54cd5161 247 Gene3D G3DSA:2.60.440.10 174 247 1.3E-33 T 14-09-2016 IPR027462 Z ring-associated protein D, C-terminal domain PAJ_RS00380 65393f30920db0f04ddc0bdd54cd5161 247 Pfam PF07072 Protein of unknown function (DUF1342) 19 225 2.8E-78 T 14-09-2016 IPR009777 Cell division protein ZapD PAJ_RS00380 65393f30920db0f04ddc0bdd54cd5161 247 Hamap MF_01092 Cell division protein ZapD [zapD]. 4 247 32.626 T 14-09-2016 IPR009777 Cell division protein ZapD PAJ_RS13525 32ffa3f7de367165d83c51cd06e0df43 108 PANTHER PTHR38778 2 108 4.2E-50 T 14-09-2016 PAJ_RS13525 32ffa3f7de367165d83c51cd06e0df43 108 Pfam PF04320 Protein with unknown function (DUF469) 7 107 5.5E-43 T 14-09-2016 IPR007416 Protein of unknown function DUF469 PAJ_RS13525 32ffa3f7de367165d83c51cd06e0df43 108 PANTHER PTHR38778:SF1 2 108 4.2E-50 T 14-09-2016 PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 SUPERFAMILY SSF52540 246 474 1.65E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 SUPERFAMILY SSF52540 4 229 7.78E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 PANTHER PTHR24220 6 378 6.4E-167 T 14-09-2016 PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 Gene3D G3DSA:3.40.50.300 255 475 1.4E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 Gene3D G3DSA:3.40.50.300 4 232 2.3E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 SMART SM00382 29 218 7.6E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 SMART SM00382 278 473 1.2E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 Pfam PF00005 ABC transporter 270 424 6.7E-23 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 Pfam PF00005 ABC transporter 20 170 5.8E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS17755 348e757d0d5a322a16c6e66e179e217b 494 PANTHER PTHR24220:SF538 6 378 6.4E-167 T 14-09-2016 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 SUPERFAMILY SSF52738 156 342 1.96E-73 T 14-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 PANTHER PTHR24421 3 349 6.1E-179 T 14-09-2016 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 Gene3D G3DSA:3.40.50.180 155 341 7.6E-84 T 14-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 Pfam PF01339 CheB methylesterase 159 336 1.2E-61 T 14-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 Gene3D G3DSA:3.40.50.2300 2 108 2.2E-26 T 14-09-2016 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 SMART SM00448 4 119 8.8E-21 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 Pfam PF00072 Response regulator receiver domain 6 109 1.3E-23 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 342 40.627 T 14-09-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 PIRSF PIRSF000876 1 346 1.5E-135 T 14-09-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 PANTHER PTHR24421:SF21 3 349 6.1E-179 T 14-09-2016 PAJ_RS08495 1e548f3b37a2957874936773b05746fc 349 SUPERFAMILY SSF52172 1 108 5.12E-27 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS09820 868710640355c64fa2acc6facab01deb 203 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 112 198 18.648 T 14-09-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 PAJ_RS09820 868710640355c64fa2acc6facab01deb 203 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 203 37.423 T 14-09-2016 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19|UniPathway: UPA00031|UniPathway: UPA00031 PAJ_RS09820 868710640355c64fa2acc6facab01deb 203 PANTHER PTHR21256:SF16 1 203 5.2E-113 T 14-09-2016 PAJ_RS09820 868710640355c64fa2acc6facab01deb 203 SUPERFAMILY SSF141734 5 122 6.28E-45 T 14-09-2016 PAJ_RS09820 868710640355c64fa2acc6facab01deb 203 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 116 201 3.9E-16 T 14-09-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 PAJ_RS09820 868710640355c64fa2acc6facab01deb 203 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 115 198 2.6E-30 T 14-09-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 PAJ_RS09820 868710640355c64fa2acc6facab01deb 203 PANTHER PTHR21256 1 203 5.2E-113 T 14-09-2016 PAJ_RS09820 868710640355c64fa2acc6facab01deb 203 SUPERFAMILY SSF101386 114 202 1.72E-23 T 14-09-2016 PAJ_RS09820 868710640355c64fa2acc6facab01deb 203 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 105 1.1E-30 T 14-09-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 PAJ_RS09820 868710640355c64fa2acc6facab01deb 203 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 105 3.0E-22 T 14-09-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 PAJ_RS15740 34f0cf7fbc2b98205bd0afb3f8ff1052 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 7 129 32.594 T 14-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15740 34f0cf7fbc2b98205bd0afb3f8ff1052 129 SUPERFAMILY SSF53137 14 129 9.81E-48 T 14-09-2016 PAJ_RS15740 34f0cf7fbc2b98205bd0afb3f8ff1052 129 Pfam PF00411 Ribosomal protein S11 19 128 1.8E-54 T 14-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15740 34f0cf7fbc2b98205bd0afb3f8ff1052 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 3.4E-55 T 14-09-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15740 34f0cf7fbc2b98205bd0afb3f8ff1052 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 14-09-2016 IPR018102 Ribosomal S11, conserved site PAJ_RS15740 34f0cf7fbc2b98205bd0afb3f8ff1052 129 PANTHER PTHR11759 11 129 2.2E-73 T 14-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15740 34f0cf7fbc2b98205bd0afb3f8ff1052 129 PIRSF PIRSF002131 1 129 1.5E-52 T 14-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15740 34f0cf7fbc2b98205bd0afb3f8ff1052 129 Gene3D G3DSA:3.30.420.80 9 129 3.0E-54 T 14-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 PANTHER PTHR11695 18 111 7.0E-222 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 Pfam PF00107 Zinc-binding dehydrogenase 200 324 2.3E-24 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 Gene3D G3DSA:3.40.50.720 193 312 2.5E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 SUPERFAMILY SSF50129 321 372 1.6E-12 T 14-09-2016 IPR011032 GroES-like PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 Gene3D G3DSA:3.90.180.10 3 192 4.3E-70 T 14-09-2016 IPR011032 GroES-like PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 SUPERFAMILY SSF50129 3 188 7.76E-75 T 14-09-2016 IPR011032 GroES-like PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 PANTHER PTHR11695 131 374 7.0E-222 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 157 9.1E-26 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 SMART SM00829 15 370 0.0011 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 14-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 PANTHER PTHR11695:SF560 18 111 7.0E-222 T 14-09-2016 PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 PANTHER PTHR11695:SF560 131 374 7.0E-222 T 14-09-2016 PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 5 372 5.3E-228 T 14-09-2016 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00040+1.1.1.-|KEGG: 00051+1.1.1.-|KEGG: 00071+1.1.1.1|KEGG: 00140+1.1.1.-|KEGG: 00240+1.1.1.-|KEGG: 00253+1.1.1.-|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00362+1.1.1.-|KEGG: 00363+1.1.1.-|KEGG: 00365+1.1.1.-|KEGG: 00400+1.1.1.-|KEGG: 00520+1.1.1.-|KEGG: 00523+1.1.1.-|KEGG: 00591+1.1.1.-|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00622+1.1.1.-|KEGG: 00625+1.1.1.1+1.1.1.-|KEGG: 00626+1.1.1.1|KEGG: 00633+1.1.1.-|KEGG: 00640+1.1.1.-|KEGG: 00650+1.1.1.-|KEGG: 00680+1.1.1.284+1.1.1.-|KEGG: 00720+1.1.1.-|KEGG: 00750+1.1.1.-|KEGG: 00830+1.1.1.1+1.1.1.-|KEGG: 00950+1.1.1.-|KEGG: 00966+1.1.1.-|KEGG: 00980+1.1.1.1|KEGG: 00981+1.1.1.-|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 PAJ_RS10185 87e6e0bcf602f565b5d1494dc47d2c90 374 SUPERFAMILY SSF51735 163 337 9.38E-48 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18070 2161fda68a8d012bd36fec843d3bf675 177 Gene3D G3DSA:1.20.120.330 1 167 7.9E-77 T 14-09-2016 PAJ_RS18070 2161fda68a8d012bd36fec843d3bf675 177 SUPERFAMILY SSF158668 5 166 1.18E-57 T 14-09-2016 PAJ_RS18070 2161fda68a8d012bd36fec843d3bf675 177 Pfam PF05068 Mannitol repressor 8 166 2.7E-61 T 14-09-2016 IPR007761 Mannitol repressor PAJ_RS18070 2161fda68a8d012bd36fec843d3bf675 177 PANTHER PTHR37941 1 173 2.7E-49 T 14-09-2016 PAJ_RS04895 ff1256b036e7d3d271bda9c569990d46 495 PANTHER PTHR10196 1 489 1.0E-145 T 14-09-2016 PAJ_RS04895 ff1256b036e7d3d271bda9c569990d46 495 Gene3D G3DSA:3.30.420.40 259 491 9.2E-62 T 14-09-2016 PAJ_RS04895 ff1256b036e7d3d271bda9c569990d46 495 SUPERFAMILY SSF53067 258 487 3.88E-51 T 14-09-2016 PAJ_RS04895 ff1256b036e7d3d271bda9c569990d46 495 SUPERFAMILY SSF53067 6 253 2.22E-68 T 14-09-2016 PAJ_RS04895 ff1256b036e7d3d271bda9c569990d46 495 Gene3D G3DSA:3.30.420.40 1 251 1.9E-73 T 14-09-2016 PAJ_RS04895 ff1256b036e7d3d271bda9c569990d46 495 PIRSF PIRSF000538 3 493 1.6E-118 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS04895 ff1256b036e7d3d271bda9c569990d46 495 PANTHER PTHR10196:SF9 1 489 1.0E-145 T 14-09-2016 PAJ_RS04895 ff1256b036e7d3d271bda9c569990d46 495 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 250 1.1E-54 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 PAJ_RS04895 ff1256b036e7d3d271bda9c569990d46 495 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 446 1.2E-39 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 PAJ_RS01870 cc4b71cfcb1606bc85544a5b03be043e 183 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 11 179 2.2E-70 T 14-09-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 PAJ_RS01870 cc4b71cfcb1606bc85544a5b03be043e 183 PANTHER PTHR11776:SF0 1 183 4.8E-84 T 14-09-2016 PAJ_RS01870 cc4b71cfcb1606bc85544a5b03be043e 183 SUPERFAMILY SSF53271 14 180 1.32E-51 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS01870 cc4b71cfcb1606bc85544a5b03be043e 183 PANTHER PTHR11776 1 183 4.8E-84 T 14-09-2016 PAJ_RS01870 cc4b71cfcb1606bc85544a5b03be043e 183 Gene3D G3DSA:3.40.50.2020 7 180 2.5E-69 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS01870 cc4b71cfcb1606bc85544a5b03be043e 183 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 11 180 38.177 T 14-09-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 PAJ_RS01870 cc4b71cfcb1606bc85544a5b03be043e 183 Pfam PF00156 Phosphoribosyl transferase domain 31 153 4.0E-14 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PAJ_RS05400 810ac11d784828cb4ba48b1327fd73f4 392 PANTHER PTHR22604 6 390 8.2E-62 T 14-09-2016 PAJ_RS05400 810ac11d784828cb4ba48b1327fd73f4 392 SUPERFAMILY SSF51735 7 173 3.94E-39 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05400 810ac11d784828cb4ba48b1327fd73f4 392 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 12 142 3.1E-26 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 PAJ_RS05400 810ac11d784828cb4ba48b1327fd73f4 392 Gene3D G3DSA:3.30.360.10 163 286 2.3E-21 T 14-09-2016 PAJ_RS05400 810ac11d784828cb4ba48b1327fd73f4 392 Gene3D G3DSA:3.30.360.10 332 382 2.3E-21 T 14-09-2016 PAJ_RS05400 810ac11d784828cb4ba48b1327fd73f4 392 PANTHER PTHR22604:SF123 6 390 8.2E-62 T 14-09-2016 PAJ_RS05400 810ac11d784828cb4ba48b1327fd73f4 392 Gene3D G3DSA:3.40.50.720 9 162 1.9E-37 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05400 810ac11d784828cb4ba48b1327fd73f4 392 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 154 277 3.3E-9 T 14-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 PAJ_RS05400 810ac11d784828cb4ba48b1327fd73f4 392 SUPERFAMILY SSF55347 150 327 8.5E-30 T 14-09-2016 PAJ_RS04630 f0a9c2805ba6a26a47eb5fc0a1a5d91d 180 PANTHER PTHR35603 1 176 3.0E-92 T 14-09-2016 PAJ_RS04630 f0a9c2805ba6a26a47eb5fc0a1a5d91d 180 Pfam PF05433 Glycine zipper 2TM domain 73 113 1.9E-11 T 14-09-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 PAJ_RS04630 f0a9c2805ba6a26a47eb5fc0a1a5d91d 180 PANTHER PTHR35603:SF2 1 176 3.0E-92 T 14-09-2016 PAJ_RS16980 c6b58415f59d70754765749091f71681 305 PANTHER PTHR30346 1 305 3.9E-151 T 14-09-2016 PAJ_RS16980 c6b58415f59d70754765749091f71681 305 Gene3D G3DSA:1.10.10.10 1 84 1.3E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16980 c6b58415f59d70754765749091f71681 305 PANTHER PTHR30346:SF15 1 305 3.9E-151 T 14-09-2016 PAJ_RS16980 c6b58415f59d70754765749091f71681 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.4E-20 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16980 c6b58415f59d70754765749091f71681 305 Gene3D G3DSA:3.40.190.10 176 267 1.2E-34 T 14-09-2016 PAJ_RS16980 c6b58415f59d70754765749091f71681 305 SUPERFAMILY SSF46785 1 85 2.81E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16980 c6b58415f59d70754765749091f71681 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.1E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16980 c6b58415f59d70754765749091f71681 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.1E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16980 c6b58415f59d70754765749091f71681 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.1E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16980 c6b58415f59d70754765749091f71681 305 Gene3D G3DSA:3.40.190.10 90 175 2.4E-19 T 14-09-2016 PAJ_RS16980 c6b58415f59d70754765749091f71681 305 Pfam PF03466 LysR substrate binding domain 88 293 1.3E-51 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS16980 c6b58415f59d70754765749091f71681 305 SUPERFAMILY SSF53850 89 296 8.22E-46 T 14-09-2016 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 SUPERFAMILY SSF53738 209 317 1.77E-9 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 SUPERFAMILY SSF53738 26 235 3.53E-52 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 14-09-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 440 2.8E-30 T 14-09-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 180 1.3E-37 T 14-09-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 SUPERFAMILY SSF53738 305 446 2.35E-32 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 Gene3D G3DSA:3.30.310.50 466 545 9.9E-30 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 PANTHER PTHR22573:SF52 18 546 2.4E-291 T 14-09-2016 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 Gene3D G3DSA:3.40.120.10 30 225 6.7E-63 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 SUPERFAMILY SSF55957 433 544 5.49E-19 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 Gene3D G3DSA:3.40.120.10 318 441 2.3E-35 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 Gene3D G3DSA:3.40.120.10 226 316 4.8E-45 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 317 1.3E-18 T 14-09-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 PANTHER PTHR22573 18 546 2.4E-291 T 14-09-2016 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 481 538 2.0E-8 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PAJ_RS02635 c8cc80de4676e23aa5ef990590cdffb7 546 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 544 0.0 T 14-09-2016 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|MetaCyc: PWY-7343 PAJ_RS01550 7161765a2538c173bd64f5376f19ac78 356 SUPERFAMILY SSF111337 1 343 5.36E-135 T 14-09-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS01550 7161765a2538c173bd64f5376f19ac78 356 PANTHER PTHR30307:SF0 2 350 3.9E-186 T 14-09-2016 PAJ_RS01550 7161765a2538c173bd64f5376f19ac78 356 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 344 46.523 T 14-09-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS01550 7161765a2538c173bd64f5376f19ac78 356 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 343 5.0E-160 T 14-09-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS01550 7161765a2538c173bd64f5376f19ac78 356 Pfam PF02547 Queuosine biosynthesis protein 4 343 1.1E-130 T 14-09-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS01550 7161765a2538c173bd64f5376f19ac78 356 Gene3D G3DSA:3.40.1780.10 179 343 2.2E-99 T 14-09-2016 PAJ_RS01550 7161765a2538c173bd64f5376f19ac78 356 Gene3D G3DSA:3.40.1780.10 1 62 2.2E-99 T 14-09-2016 PAJ_RS01550 7161765a2538c173bd64f5376f19ac78 356 PANTHER PTHR30307 2 350 3.9E-186 T 14-09-2016 PAJ_RS01550 7161765a2538c173bd64f5376f19ac78 356 Gene3D G3DSA:2.40.10.240 64 142 1.1E-17 T 14-09-2016 PAJ_RS07365 4f28b5c3dc2c99da4c136819e80698c1 241 SMART SM00862 155 231 4.1E-20 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS07365 4f28b5c3dc2c99da4c136819e80698c1 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 2.8E-21 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS07365 4f28b5c3dc2c99da4c136819e80698c1 241 PANTHER PTHR26402:SF548 2 241 2.7E-145 T 14-09-2016 PAJ_RS07365 4f28b5c3dc2c99da4c136819e80698c1 241 Gene3D G3DSA:1.10.10.10 132 234 1.2E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07365 4f28b5c3dc2c99da4c136819e80698c1 241 Gene3D G3DSA:3.40.50.2300 1 129 1.1E-28 T 14-09-2016 PAJ_RS07365 4f28b5c3dc2c99da4c136819e80698c1 241 PANTHER PTHR26402 2 241 2.7E-145 T 14-09-2016 PAJ_RS07365 4f28b5c3dc2c99da4c136819e80698c1 241 SUPERFAMILY SSF52172 1 188 5.6E-30 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS07365 4f28b5c3dc2c99da4c136819e80698c1 241 SMART SM00448 2 112 6.4E-29 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS07365 4f28b5c3dc2c99da4c136819e80698c1 241 Pfam PF00072 Response regulator receiver domain 4 112 2.1E-19 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS11685 23498659e51fee75cc44f47dbdd65473 507 SUPERFAMILY SSF109604 314 505 4.87E-52 T 14-09-2016 PAJ_RS11685 23498659e51fee75cc44f47dbdd65473 507 Gene3D G3DSA:3.30.420.40 5 132 5.2E-44 T 14-09-2016 PAJ_RS11685 23498659e51fee75cc44f47dbdd65473 507 PANTHER PTHR30005 1 506 4.9E-243 T 14-09-2016 PAJ_RS11685 23498659e51fee75cc44f47dbdd65473 507 Gene3D G3DSA:3.30.420.150 133 311 1.0E-52 T 14-09-2016 PAJ_RS11685 23498659e51fee75cc44f47dbdd65473 507 SUPERFAMILY SSF53067 138 311 1.5E-46 T 14-09-2016 PAJ_RS11685 23498659e51fee75cc44f47dbdd65473 507 Pfam PF02541 Ppx/GppA phosphatase family 27 309 4.4E-97 T 14-09-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 PAJ_RS11685 23498659e51fee75cc44f47dbdd65473 507 PIRSF PIRSF001267 4 506 3.1E-199 T 14-09-2016 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40|UniPathway: UPA00908 PAJ_RS11685 23498659e51fee75cc44f47dbdd65473 507 PANTHER PTHR30005:SF4 1 506 4.9E-243 T 14-09-2016 PAJ_RS11685 23498659e51fee75cc44f47dbdd65473 507 SUPERFAMILY SSF53067 14 134 1.3E-36 T 14-09-2016 PAJ_RS11685 23498659e51fee75cc44f47dbdd65473 507 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 14 307 1.1E-98 T 14-09-2016 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 SUPERFAMILY SSF51126 496 659 4.71E-17 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 SUPERFAMILY SSF51126 81 447 4.71E-17 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 SUPERFAMILY SSF103515 670 985 4.84E-50 T 14-09-2016 IPR005546 Autotransporter beta-domain PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 Pfam PF03212 Pertactin 570 658 5.3E-8 T 14-09-2016 IPR004899 Pertactin, central region PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 560 985 1.1E-110 T 14-09-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 PANTHER PTHR12338 530 985 1.2E-146 T 14-09-2016 PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 PANTHER PTHR12338:SF5 530 985 1.2E-146 T 14-09-2016 PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 Gene3D G3DSA:2.40.128.130 661 985 2.2E-85 T 14-09-2016 IPR005546 Autotransporter beta-domain PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 Gene3D G3DSA:2.160.20.20 254 659 1.2E-34 T 14-09-2016 IPR012332 P22 tailspike C-terminal domain-like PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 SMART SM00869 704 974 5.2E-43 T 14-09-2016 IPR005546 Autotransporter beta-domain PAJ_RS02230 6ba621b893177bda39f1aad027fd9723 985 Pfam PF03797 Autotransporter beta-domain 705 971 6.6E-46 T 14-09-2016 IPR005546 Autotransporter beta-domain PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 SUPERFAMILY SSF63520 249 349 8.76E-13 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 PANTHER PTHR30185 67 557 1.1E-78 T 14-09-2016 PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 Gene3D G3DSA:1.10.10.10 150 195 2.8E-4 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 SUPERFAMILY SSF52794 472 546 2.56E-9 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 Pfam PF08279 HTH domain 71 127 5.0E-5 T 14-09-2016 IPR013196 Helix-turn-helix, type 11 PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 Pfam PF05043 Mga helix-turn-helix domain 169 221 4.0E-6 T 14-09-2016 IPR007737 Mga helix-turn-helix domain PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 Gene3D G3DSA:3.40.50.270 473 544 2.0E-7 T 14-09-2016 PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 PANTHER PTHR30185:SF5 67 557 1.1E-78 T 14-09-2016 PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 Pfam PF00874 PRD domain 265 349 3.9E-9 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 Pfam PF00874 PRD domain 376 465 7.1E-17 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 Gene3D G3DSA:1.10.10.10 68 131 3.2E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 Gene3D G3DSA:1.10.1790.10 366 468 7.9E-19 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 Gene3D G3DSA:1.10.1790.10 257 350 2.3E-11 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS14820 e688b0f93f9762eaa3b1c0477d33d50a 567 SUPERFAMILY SSF63520 366 466 2.88E-19 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 Gene3D G3DSA:3.30.450.40 1 161 1.2E-48 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 Pfam PF01590 GAF domain 18 152 3.4E-16 T 14-09-2016 IPR003018 GAF domain GO:0005515 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 173 294 1.8E-23 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 613 631 - T 14-09-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 Gene3D G3DSA:3.20.20.60 428 737 4.1E-99 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 PANTHER PTHR22931 1 716 0.0 T 14-09-2016 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 174 731 1.2E-126 T 14-09-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 SUPERFAMILY SSF47831 203 309 3.01E-24 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 427 707 2.5E-102 T 14-09-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 14-09-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 SUPERFAMILY SSF55781 2 159 1.9E-31 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 SUPERFAMILY SSF52009 293 411 1.57E-24 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 Gene3D G3DSA:1.10.274.10 199 300 4.1E-32 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 320 391 3.7E-16 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 SMART SM00065 17 164 2.4E-28 T 14-09-2016 IPR003018 GAF domain GO:0005515 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 Gene3D G3DSA:3.50.30.10 301 415 8.8E-29 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 SUPERFAMILY SSF51621 424 714 8.38E-95 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 630 645 2.1E-24 T 14-09-2016 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 2.1E-24 T 14-09-2016 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 613 628 2.1E-24 T 14-09-2016 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 666 678 2.1E-24 T 14-09-2016 PAJ_RS13195 68e8ac00ba71233bf2661e0e32629444 748 PANTHER PTHR22931:SF23 1 716 0.0 T 14-09-2016 PAJ_RS18980 c5ad979256259e8d394d8d4ee0804824 107 SUPERFAMILY SSF142906 1 103 4.05E-29 T 14-09-2016 PAJ_RS18980 c5ad979256259e8d394d8d4ee0804824 107 Pfam PF04237 YjbR 12 101 2.4E-15 T 14-09-2016 IPR007351 Uncharacterised protein YjbR PAJ_RS18980 c5ad979256259e8d394d8d4ee0804824 107 PANTHER PTHR35145 1 103 2.4E-28 T 14-09-2016 PAJ_RS12055 4c3f768b347fffea768eefdbde518909 154 PANTHER PTHR35867 2 153 6.3E-41 T 14-09-2016 PAJ_RS12055 4c3f768b347fffea768eefdbde518909 154 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 139 2.4E-35 T 14-09-2016 IPR007359 Positive regulator of sigma(E), RseC/MucC PAJ_RS12055 4c3f768b347fffea768eefdbde518909 154 PIRSF PIRSF004923 1 151 1.3E-41 T 14-09-2016 IPR026268 Protein RseC PAJ_RS12055 4c3f768b347fffea768eefdbde518909 154 PANTHER PTHR35867:SF1 2 153 6.3E-41 T 14-09-2016 PAJ_RS06250 d5aa5b8eaa054881f2774fb87675befd 338 PANTHER PTHR32196:SF19 1 336 4.9E-177 T 14-09-2016 PAJ_RS06250 d5aa5b8eaa054881f2774fb87675befd 338 PANTHER PTHR32196 1 336 4.9E-177 T 14-09-2016 PAJ_RS06250 d5aa5b8eaa054881f2774fb87675befd 338 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 321 4.2E-46 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.3E-18 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.3E-18 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.3E-18 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.3E-18 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 PANTHER PTHR13479 2 74 1.6E-34 T 14-09-2016 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 SUPERFAMILY SSF46911 3 74 7.06E-29 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 Gene3D G3DSA:4.10.640.10 8 74 1.1E-32 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 8.1E-38 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.313 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 3.0E-22 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 14-09-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15315 4d776f2becc435db4210658806b3f9df 75 Pfam PF01084 Ribosomal protein S18 19 68 7.8E-25 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS11435 28ad48a018ed3f79bcee28c22ce7c487 389 Gene3D G3DSA:3.40.710.10 33 374 1.5E-69 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS11435 28ad48a018ed3f79bcee28c22ce7c487 389 PANTHER PTHR22935 3 356 5.3E-70 T 14-09-2016 PAJ_RS11435 28ad48a018ed3f79bcee28c22ce7c487 389 SUPERFAMILY SSF56601 33 361 1.14E-67 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS11435 28ad48a018ed3f79bcee28c22ce7c487 389 Pfam PF00144 Beta-lactamase 45 357 1.2E-64 T 14-09-2016 IPR001466 Beta-lactamase-related PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 PANTHER PTHR24220:SF402 6 283 3.9E-187 T 14-09-2016 PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 PANTHER PTHR24220 6 283 3.9E-187 T 14-09-2016 PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 Gene3D G3DSA:3.40.50.300 4 236 1.2E-79 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 PANTHER PTHR24220 300 358 3.9E-187 T 14-09-2016 PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 SUPERFAMILY SSF52540 5 243 1.36E-86 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 SUPERFAMILY SSF50331 238 356 1.36E-13 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 Pfam PF00005 ABC transporter 22 163 2.0E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 SMART SM00382 30 213 3.4E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 Pfam PF08402 TOBE domain 280 356 1.2E-16 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 36 353 1.9E-114 T 14-09-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 PAJ_RS10675 6344c8f15aa84fb5a3694757f2e08dad 361 PANTHER PTHR24220:SF402 300 358 3.9E-187 T 14-09-2016 PAJ_RS15995 a596a85bdf17a9f79e55a3ccd9ce9d0b 238 Gene3D G3DSA:3.40.50.300 1 237 3.9E-99 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15995 a596a85bdf17a9f79e55a3ccd9ce9d0b 238 SUPERFAMILY SSF52540 11 235 6.64E-32 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15995 a596a85bdf17a9f79e55a3ccd9ce9d0b 238 PANTHER PTHR10285:SF72 2 238 1.1E-115 T 14-09-2016 PAJ_RS15995 a596a85bdf17a9f79e55a3ccd9ce9d0b 238 ProSitePatterns PS00567 Phosphoribulokinase signature. 113 126 - T 14-09-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 PAJ_RS15995 a596a85bdf17a9f79e55a3ccd9ce9d0b 238 PANTHER PTHR10285 2 238 1.1E-115 T 14-09-2016 PAJ_RS15995 a596a85bdf17a9f79e55a3ccd9ce9d0b 238 PRINTS PR00478 Phosphoribulokinase family signature 113 130 6.9E-21 T 14-09-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 PAJ_RS15995 a596a85bdf17a9f79e55a3ccd9ce9d0b 238 PRINTS PR00478 Phosphoribulokinase family signature 75 93 6.9E-21 T 14-09-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 PAJ_RS15995 a596a85bdf17a9f79e55a3ccd9ce9d0b 238 PRINTS PR00478 Phosphoribulokinase family signature 131 154 6.9E-21 T 14-09-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 PAJ_RS15995 a596a85bdf17a9f79e55a3ccd9ce9d0b 238 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 1 163 7.5E-55 T 14-09-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 PAJ_RS16380 e5bc2b44ed6bd53e45ae4e13006c97c2 89 PANTHER PTHR38775 1 86 2.6E-25 T 14-09-2016 PAJ_RS16380 e5bc2b44ed6bd53e45ae4e13006c97c2 89 Pfam PF06611 Protein of unknown function (DUF1145) 1 58 2.3E-26 T 14-09-2016 IPR009525 Protein of unknown function DUF1145 PAJ_RS16380 e5bc2b44ed6bd53e45ae4e13006c97c2 89 PANTHER PTHR38775:SF1 1 86 2.6E-25 T 14-09-2016 PAJ_RS13175 3a200950e6b739d7854a38299f555dc3 177 PIRSF PIRSF004525 1 173 1.0E-46 T 14-09-2016 IPR016419 Prepilin peptidase-dependent protein B, predicted PAJ_RS13175 3a200950e6b739d7854a38299f555dc3 177 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 27 2.9E-6 T 14-09-2016 IPR012902 Prokaryotic N-terminal methylation site PAJ_RS13175 3a200950e6b739d7854a38299f555dc3 177 SUPERFAMILY SSF54523 8 112 2.9E-5 T 14-09-2016 PAJ_RS13175 3a200950e6b739d7854a38299f555dc3 177 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 3 27 1.6E-7 T 14-09-2016 IPR012902 Prokaryotic N-terminal methylation site PAJ_RS13175 3a200950e6b739d7854a38299f555dc3 177 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 14-09-2016 IPR012902 Prokaryotic N-terminal methylation site PAJ_RS16265 9378d497451359d8b3d331e7e0f76bc8 178 Gene3D G3DSA:3.40.50.300 3 172 5.8E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16265 9378d497451359d8b3d331e7e0f76bc8 178 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 11 171 2.3E-66 T 14-09-2016 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530|UniPathway: UPA00792 PAJ_RS16265 9378d497451359d8b3d331e7e0f76bc8 178 PANTHER PTHR11603 1 176 5.3E-106 T 14-09-2016 PAJ_RS16265 9378d497451359d8b3d331e7e0f76bc8 178 Pfam PF01202 Shikimate kinase 17 170 4.0E-11 T 14-09-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS16265 9378d497451359d8b3d331e7e0f76bc8 178 PANTHER PTHR11603:SF154 1 176 5.3E-106 T 14-09-2016 PAJ_RS16265 9378d497451359d8b3d331e7e0f76bc8 178 SUPERFAMILY SSF52540 6 172 5.06E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01380 350441bc38e1cb7cb64c4c0453aab286 102 Gene3D G3DSA:3.40.50.270 1 100 8.3E-39 T 14-09-2016 PAJ_RS01380 350441bc38e1cb7cb64c4c0453aab286 102 PANTHER PTHR34581 3 100 1.6E-41 T 14-09-2016 PAJ_RS01380 350441bc38e1cb7cb64c4c0453aab286 102 SUPERFAMILY SSF52794 1 101 1.12E-35 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS01380 350441bc38e1cb7cb64c4c0453aab286 102 PANTHER PTHR34581:SF2 3 100 1.6E-41 T 14-09-2016 PAJ_RS01380 350441bc38e1cb7cb64c4c0453aab286 102 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 94 1.7E-25 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Pfam PF02824 TGS domain 4 61 2.3E-12 T 14-09-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 PANTHER PTHR11451:SF31 1 642 0.0 T 14-09-2016 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 528 1.1E-50 T 14-09-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 SUPERFAMILY SSF81271 3 61 1.37E-16 T 14-09-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 PANTHER PTHR11451 1 642 0.0 T 14-09-2016 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 SUPERFAMILY SSF52954 530 636 6.95E-32 T 14-09-2016 IPR004154 Anticodon-binding PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Gene3D G3DSA:3.30.980.10 188 224 1.4E-40 T 14-09-2016 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Gene3D G3DSA:3.30.980.10 66 129 1.4E-40 T 14-09-2016 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 33.923 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Gene3D G3DSA:3.10.20.30 1 64 8.2E-24 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 SMART SM00863 170 219 3.0E-19 T 14-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 5.8E-245 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 SUPERFAMILY SSF55681 243 525 8.16E-98 T 14-09-2016 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Gene3D G3DSA:3.40.50.800 532 640 6.9E-37 T 14-09-2016 IPR004154 Anticodon-binding PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Gene3D G3DSA:3.30.930.10 242 529 5.1E-124 T 14-09-2016 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Gene3D G3DSA:3.30.54.20 131 187 8.3E-20 T 14-09-2016 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 3.1E-54 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 3.1E-54 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 3.1E-54 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 3.1E-54 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 3.1E-54 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 SUPERFAMILY SSF55186 64 241 6.54E-64 T 14-09-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Pfam PF03129 Anticodon binding domain 541 630 1.1E-21 T 14-09-2016 IPR004154 Anticodon-binding PAJ_RS05760 2921676efbae78bf1bbf2d502373c0d6 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 7.2E-14 T 14-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 PANTHER PTHR11645 1 270 1.4E-118 T 14-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 100 5.1E-22 T 14-09-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 267 27.07 T 14-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 267 1.9E-39 T 14-09-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 Gene3D G3DSA:3.40.50.720 3 161 1.5E-48 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 SUPERFAMILY SSF48179 162 268 3.74E-37 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 PIRSF PIRSF000193 3 270 9.1E-92 T 14-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 SUPERFAMILY SSF51735 4 161 2.13E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 PANTHER PTHR11645:SF0 1 270 1.4E-118 T 14-09-2016 PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 223 245 - T 14-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 Gene3D G3DSA:1.10.3730.10 163 266 8.3E-44 T 14-09-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PAJ_RS01445 d862d9bed68959fa5853611b618202a7 270 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 267 5.9E-90 T 14-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PAJ_RS12965 afd4bafd015a23ddb706a85f07d4462b 199 Pfam PF01546 Peptidase family M20/M25/M40 67 197 2.5E-10 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS12965 afd4bafd015a23ddb706a85f07d4462b 199 SUPERFAMILY SSF55031 4 113 5.1E-23 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS12965 afd4bafd015a23ddb706a85f07d4462b 199 Gene3D G3DSA:3.30.70.360 4 107 1.7E-27 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS12965 afd4bafd015a23ddb706a85f07d4462b 199 PANTHER PTHR11014:SF64 2 199 4.0E-46 T 14-09-2016 PAJ_RS12965 afd4bafd015a23ddb706a85f07d4462b 199 PANTHER PTHR11014 2 199 4.0E-46 T 14-09-2016 PAJ_RS12965 afd4bafd015a23ddb706a85f07d4462b 199 Pfam PF07687 Peptidase dimerisation domain 2 100 2.2E-20 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS12965 afd4bafd015a23ddb706a85f07d4462b 199 SUPERFAMILY SSF53187 113 199 4.09E-16 T 14-09-2016 PAJ_RS12965 afd4bafd015a23ddb706a85f07d4462b 199 SUPERFAMILY SSF53187 12 30 4.09E-16 T 14-09-2016 PAJ_RS12965 afd4bafd015a23ddb706a85f07d4462b 199 Gene3D G3DSA:3.40.630.10 108 198 2.5E-16 T 14-09-2016 PAJ_RS18800 f430e6dafb76a9c6803b3b7e43ff61f1 532 PANTHER PTHR21631 1 531 2.0E-265 T 14-09-2016 PAJ_RS18800 f430e6dafb76a9c6803b3b7e43ff61f1 532 Pfam PF01274 Malate synthase 12 531 1.3E-196 T 14-09-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PAJ_RS18800 f430e6dafb76a9c6803b3b7e43ff61f1 532 SUPERFAMILY SSF51645 5 531 5.23E-182 T 14-09-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PAJ_RS18800 f430e6dafb76a9c6803b3b7e43ff61f1 532 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 24 531 1.6E-236 T 14-09-2016 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PAJ_RS18800 f430e6dafb76a9c6803b3b7e43ff61f1 532 PIRSF PIRSF001363 2 532 4.4E-239 T 14-09-2016 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PAJ_RS18800 f430e6dafb76a9c6803b3b7e43ff61f1 532 ProSitePatterns PS00510 Malate synthase signature. 265 280 - T 14-09-2016 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PAJ_RS18800 f430e6dafb76a9c6803b3b7e43ff61f1 532 Gene3D G3DSA:1.20.1220.12 414 525 3.1E-34 T 14-09-2016 PAJ_RS18800 f430e6dafb76a9c6803b3b7e43ff61f1 532 Gene3D G3DSA:3.20.20.360 72 413 1.8E-120 T 14-09-2016 PAJ_RS18800 f430e6dafb76a9c6803b3b7e43ff61f1 532 PANTHER PTHR21631:SF1 1 531 2.0E-265 T 14-09-2016 PAJ_RS16035 5e021a2897e7d6439e9c73eeac6be91a 392 PANTHER PTHR23514:SF3 1 387 5.5E-90 T 14-09-2016 PAJ_RS16035 5e021a2897e7d6439e9c73eeac6be91a 392 PANTHER PTHR23514 1 387 5.5E-90 T 14-09-2016 PAJ_RS16035 5e021a2897e7d6439e9c73eeac6be91a 392 Gene3D G3DSA:1.20.1250.20 206 384 2.3E-12 T 14-09-2016 PAJ_RS16035 5e021a2897e7d6439e9c73eeac6be91a 392 Gene3D G3DSA:1.20.1250.20 8 185 1.2E-15 T 14-09-2016 PAJ_RS16035 5e021a2897e7d6439e9c73eeac6be91a 392 Hamap MF_01044 Protein TsgA [tsgA]. 1 388 28.147 T 14-09-2016 IPR023528 Major facilitator superfamily transporter, TsgA PAJ_RS16035 5e021a2897e7d6439e9c73eeac6be91a 392 Pfam PF07690 Major Facilitator Superfamily 14 319 1.0E-24 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS16035 5e021a2897e7d6439e9c73eeac6be91a 392 SUPERFAMILY SSF103473 3 387 8.63E-39 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS06655 9824f211e53d611664c408ead530bb73 326 SUPERFAMILY SSF51658 4 323 6.81E-76 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS06655 9824f211e53d611664c408ead530bb73 326 PANTHER PTHR12110 55 228 1.2E-13 T 14-09-2016 PAJ_RS06655 9824f211e53d611664c408ead530bb73 326 Pfam PF01261 Xylose isomerase-like TIM barrel 48 231 2.0E-14 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS06655 9824f211e53d611664c408ead530bb73 326 PANTHER PTHR12110:SF21 55 228 1.2E-13 T 14-09-2016 PAJ_RS06655 9824f211e53d611664c408ead530bb73 326 Gene3D G3DSA:3.20.20.150 39 323 1.3E-72 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS04250 4851111b9596789d5f236862c784851a 89 Pfam PF14145 YrhK-like protein 19 72 6.9E-17 T 14-09-2016 IPR025424 YrhK domain PAJ_RS04250 4851111b9596789d5f236862c784851a 89 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 14 76 4.0E-19 T 14-09-2016 PAJ_RS11880 f4bd482702c69804028bff3ae73384df 389 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 19 374 2.5E-170 T 14-09-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS11880 f4bd482702c69804028bff3ae73384df 389 Pfam PF04055 Radical SAM superfamily 125 296 6.9E-17 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS11880 f4bd482702c69804028bff3ae73384df 389 SUPERFAMILY SSF102114 121 331 1.57E-14 T 14-09-2016 PAJ_RS11880 f4bd482702c69804028bff3ae73384df 389 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 22 369 75.149 T 14-09-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS11880 f4bd482702c69804028bff3ae73384df 389 PANTHER PTHR30544:SF5 11 389 3.2E-209 T 14-09-2016 PAJ_RS11880 f4bd482702c69804028bff3ae73384df 389 PIRSF PIRSF006004 16 383 1.7E-146 T 14-09-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS11880 f4bd482702c69804028bff3ae73384df 389 PANTHER PTHR30544 11 389 3.2E-209 T 14-09-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS11880 f4bd482702c69804028bff3ae73384df 389 Gene3D G3DSA:3.20.20.70 122 327 2.0E-16 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 Pfam PF03466 LysR substrate binding domain 86 269 7.2E-16 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.7E-20 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 SUPERFAMILY SSF53850 85 269 2.17E-15 T 14-09-2016 PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 PANTHER PTHR30579:SF0 1 268 8.0E-89 T 14-09-2016 PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 SUPERFAMILY SSF46785 2 86 2.43E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.8E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.8E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.8E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 Gene3D G3DSA:3.40.190.10 86 159 4.2E-7 T 14-09-2016 PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 PANTHER PTHR30579 1 268 8.0E-89 T 14-09-2016 PAJ_RS16905 cf481590e6712b1df14920da00950bf4 274 Gene3D G3DSA:1.10.10.10 2 85 7.9E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13825 4c44f94abdf45f2597c07eaac0f8ebe2 119 TIGRFAM TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family 19 119 5.6E-27 T 14-09-2016 IPR021356 Integrating conjugative element protein PFL4702 PAJ_RS13825 4c44f94abdf45f2597c07eaac0f8ebe2 119 Pfam PF11190 Protein of unknown function (DUF2976) 32 118 1.0E-23 T 14-09-2016 IPR021356 Integrating conjugative element protein PFL4702 PAJ_RS02800 3d36f8b6236d871352745d891b364daf 268 Gene3D G3DSA:1.25.40.10 150 258 1.4E-14 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS02800 3d36f8b6236d871352745d891b364daf 268 Pfam PF13174 Tetratricopeptide repeat 223 255 4.6E-7 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS02800 3d36f8b6236d871352745d891b364daf 268 PANTHER PTHR26312 159 265 1.2E-36 T 14-09-2016 PAJ_RS02800 3d36f8b6236d871352745d891b364daf 268 SUPERFAMILY SSF48452 146 261 3.42E-15 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS02800 3d36f8b6236d871352745d891b364daf 268 Pfam PF13432 Tetratricopeptide repeat 159 219 1.2E-8 T 14-09-2016 PAJ_RS02800 3d36f8b6236d871352745d891b364daf 268 SMART SM00028 222 255 5.5 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS02800 3d36f8b6236d871352745d891b364daf 268 SMART SM00028 185 218 28.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS02800 3d36f8b6236d871352745d891b364daf 268 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 148 265 8.0E-42 T 14-09-2016 IPR014162 Tol-Pal system, YbgF PAJ_RS02800 3d36f8b6236d871352745d891b364daf 268 PANTHER PTHR26312:SF74 159 265 1.2E-36 T 14-09-2016 PAJ_RS02800 3d36f8b6236d871352745d891b364daf 268 Pfam PF16331 TolA binding protein trimerisation 37 109 1.1E-23 T 14-09-2016 IPR032519 YbgF, trimerisation domain GO:0070206 PAJ_RS01820 228a8e7df16441b0099cc97d0e56c523 222 SMART SM00382 26 206 1.9E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01820 228a8e7df16441b0099cc97d0e56c523 222 Gene3D G3DSA:3.40.50.300 2 206 3.5E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01820 228a8e7df16441b0099cc97d0e56c523 222 PANTHER PTHR24220:SF581 3 200 5.4E-59 T 14-09-2016 PAJ_RS01820 228a8e7df16441b0099cc97d0e56c523 222 Pfam PF00005 ABC transporter 21 158 1.6E-25 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS01820 228a8e7df16441b0099cc97d0e56c523 222 PANTHER PTHR24220 3 200 5.4E-59 T 14-09-2016 PAJ_RS01820 228a8e7df16441b0099cc97d0e56c523 222 SUPERFAMILY SSF52540 2 206 1.89E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01820 228a8e7df16441b0099cc97d0e56c523 222 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 Pfam PF00813 FliP family 46 237 2.1E-77 T 14-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 45 241 8.7E-94 T 14-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PANTHER PTHR30587 4 243 5.0E-125 T 14-09-2016 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 62 82 9.8E-68 T 14-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 215 240 9.8E-68 T 14-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 43 62 9.8E-68 T 14-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 191 212 9.8E-68 T 14-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 82 101 9.8E-68 T 14-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 170 190 9.8E-68 T 14-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PANTHER PTHR30587:SF0 4 243 5.0E-125 T 14-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 218 230 - T 14-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 170 185 - T 14-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 141 153 6.2E-33 T 14-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 231 241 6.2E-33 T 14-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 101 113 6.2E-33 T 14-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 113 127 6.2E-33 T 14-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 41 50 6.2E-33 T 14-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PAJ_RS08925 8d56aa03ec1aeeca53a333e6677d489b 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 163 175 6.2E-33 T 14-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PAJ_RS07070 639dabeab7ff4bd4c3d4850324cf57c0 302 SUPERFAMILY SSF46785 2 112 9.37E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07070 639dabeab7ff4bd4c3d4850324cf57c0 302 PANTHER PTHR30537 1 298 6.4E-77 T 14-09-2016 PAJ_RS07070 639dabeab7ff4bd4c3d4850324cf57c0 302 Pfam PF03466 LysR substrate binding domain 88 293 1.4E-35 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS07070 639dabeab7ff4bd4c3d4850324cf57c0 302 PANTHER PTHR30537:SF5 1 298 6.4E-77 T 14-09-2016 PAJ_RS07070 639dabeab7ff4bd4c3d4850324cf57c0 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.0E-13 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07070 639dabeab7ff4bd4c3d4850324cf57c0 302 Gene3D G3DSA:1.10.10.10 2 87 2.1E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07070 639dabeab7ff4bd4c3d4850324cf57c0 302 SUPERFAMILY SSF53850 90 298 4.89E-35 T 14-09-2016 PAJ_RS07070 639dabeab7ff4bd4c3d4850324cf57c0 302 Gene3D G3DSA:3.40.190.10 92 176 2.5E-20 T 14-09-2016 PAJ_RS07070 639dabeab7ff4bd4c3d4850324cf57c0 302 Gene3D G3DSA:3.40.190.10 177 259 3.2E-19 T 14-09-2016 PAJ_RS06300 ea00664039ccce984d3ee9f47faecf15 297 SUPERFAMILY SSF55846 40 210 3.27E-54 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS06300 ea00664039ccce984d3ee9f47faecf15 297 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 56 194 3.6E-22 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS06300 ea00664039ccce984d3ee9f47faecf15 297 SUPERFAMILY SSF47090 214 293 1.24E-19 T 14-09-2016 IPR002477 Peptidoglycan binding-like PAJ_RS06300 ea00664039ccce984d3ee9f47faecf15 297 SMART SM00644 47 194 6.3E-26 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS06300 ea00664039ccce984d3ee9f47faecf15 297 PANTHER PTHR30417 56 295 2.8E-79 T 14-09-2016 PAJ_RS06300 ea00664039ccce984d3ee9f47faecf15 297 Pfam PF01471 Putative peptidoglycan binding domain 230 282 7.2E-9 T 14-09-2016 IPR002477 Peptidoglycan binding-like PAJ_RS06300 ea00664039ccce984d3ee9f47faecf15 297 Gene3D G3DSA:3.40.80.10 43 212 2.6E-58 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS19980 352befda3900242e27e6735390438f7c 211 PANTHER PTHR14097 3 206 2.4E-60 T 14-09-2016 PAJ_RS19980 352befda3900242e27e6735390438f7c 211 SUPERFAMILY SSF51735 2 197 2.88E-39 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS19980 352befda3900242e27e6735390438f7c 211 PANTHER PTHR14097:SF7 3 206 2.4E-60 T 14-09-2016 PAJ_RS19980 352befda3900242e27e6735390438f7c 211 Gene3D G3DSA:3.40.50.720 1 193 5.9E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS19980 352befda3900242e27e6735390438f7c 211 Pfam PF13460 NAD(P)H-binding 8 188 7.6E-8 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS11750 61d2c6a7298e3ab558e9c3f1c7a8093c 884 Gene3D G3DSA:3.40.50.300 272 446 3.3E-23 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11750 61d2c6a7298e3ab558e9c3f1c7a8093c 884 Gene3D G3DSA:3.40.50.300 626 649 3.3E-23 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11750 61d2c6a7298e3ab558e9c3f1c7a8093c 884 Gene3D G3DSA:3.40.50.300 747 827 3.3E-23 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11750 61d2c6a7298e3ab558e9c3f1c7a8093c 884 SUPERFAMILY SSF89550 40 153 9.22E-9 T 14-09-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 PAJ_RS11750 61d2c6a7298e3ab558e9c3f1c7a8093c 884 Gene3D G3DSA:3.20.20.140 40 150 8.9E-6 T 14-09-2016 PAJ_RS11750 61d2c6a7298e3ab558e9c3f1c7a8093c 884 SUPERFAMILY SSF52540 751 828 3.16E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11750 61d2c6a7298e3ab558e9c3f1c7a8093c 884 SUPERFAMILY SSF52540 273 448 3.16E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11750 61d2c6a7298e3ab558e9c3f1c7a8093c 884 SUPERFAMILY SSF52540 587 670 3.16E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13980 910f4b97e2f6d5d4cc6ac65773df3e5a 89 Gene3D G3DSA:1.10.1200.10 8 82 2.8E-13 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS13980 910f4b97e2f6d5d4cc6ac65773df3e5a 89 Pfam PF00550 Phosphopantetheine attachment site 28 79 2.0E-12 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS13980 910f4b97e2f6d5d4cc6ac65773df3e5a 89 SUPERFAMILY SSF47336 25 85 5.37E-13 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS08820 36222450cd61448c469a469f1d4decc3 465 PANTHER PTHR30288:SF0 2 462 1.1E-80 T 14-09-2016 PAJ_RS08820 36222450cd61448c469a469f1d4decc3 465 PANTHER PTHR30288 2 462 1.1E-80 T 14-09-2016 PAJ_RS08820 36222450cd61448c469a469f1d4decc3 465 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 12 106 4.4E-19 T 14-09-2016 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 PAJ_RS08820 36222450cd61448c469a469f1d4decc3 465 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 223 452 1.3E-58 T 14-09-2016 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 PAJ_RS15725 b9ce67685fa2e85359b7be18af9f96c9 128 Gene3D G3DSA:3.90.1030.10 1 117 2.5E-51 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15725 b9ce67685fa2e85359b7be18af9f96c9 128 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 6.9E-51 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15725 b9ce67685fa2e85359b7be18af9f96c9 128 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15725 b9ce67685fa2e85359b7be18af9f96c9 128 Pfam PF01196 Ribosomal protein L17 20 116 1.2E-34 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15725 b9ce67685fa2e85359b7be18af9f96c9 128 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.022 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15725 b9ce67685fa2e85359b7be18af9f96c9 128 PANTHER PTHR14413 1 119 6.5E-69 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15725 b9ce67685fa2e85359b7be18af9f96c9 128 SUPERFAMILY SSF64263 1 119 1.96E-51 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS10955 925050c313e1dbc5a4ffb3ef90f7c976 184 PANTHER PTHR10681:SF107 1 178 2.4E-77 T 14-09-2016 PAJ_RS10955 925050c313e1dbc5a4ffb3ef90f7c976 184 PANTHER PTHR10681 1 178 2.4E-77 T 14-09-2016 PAJ_RS10955 925050c313e1dbc5a4ffb3ef90f7c976 184 SUPERFAMILY SSF52833 51 177 3.5E-38 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10955 925050c313e1dbc5a4ffb3ef90f7c976 184 Pfam PF08534 Redoxin 41 164 2.2E-24 T 14-09-2016 IPR013740 Redoxin GO:0016491 PAJ_RS10955 925050c313e1dbc5a4ffb3ef90f7c976 184 ProSitePatterns PS00194 Thioredoxin family active site. 71 89 - T 14-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PAJ_RS10955 925050c313e1dbc5a4ffb3ef90f7c976 184 Gene3D G3DSA:3.40.30.10 11 177 1.8E-40 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10955 925050c313e1dbc5a4ffb3ef90f7c976 184 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 5 177 4.5E-76 T 14-09-2016 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 PAJ_RS19805 5111f5ead90978d01dca6748157eea9c 85 PIRSF PIRSF003113 1 84 4.3E-20 T 14-09-2016 IPR002634 BolA protein PAJ_RS19805 5111f5ead90978d01dca6748157eea9c 85 SUPERFAMILY SSF82657 2 83 4.45E-26 T 14-09-2016 IPR002634 BolA protein PAJ_RS19805 5111f5ead90978d01dca6748157eea9c 85 Pfam PF01722 BolA-like protein 20 75 1.8E-12 T 14-09-2016 IPR002634 BolA protein PAJ_RS19805 5111f5ead90978d01dca6748157eea9c 85 Gene3D G3DSA:3.30.300.90 1 81 1.5E-24 T 14-09-2016 IPR002634 BolA protein PAJ_RS19805 5111f5ead90978d01dca6748157eea9c 85 PANTHER PTHR12735:SF24 1 85 5.4E-28 T 14-09-2016 PAJ_RS19805 5111f5ead90978d01dca6748157eea9c 85 PANTHER PTHR12735 1 85 5.4E-28 T 14-09-2016 PAJ_RS07455 2d131572331844f7557dd8436336a7a0 167 ProSitePatterns PS01265 Tpx family signature. 84 95 - T 14-09-2016 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 PAJ_RS07455 2d131572331844f7557dd8436336a7a0 167 Hamap MF_00269 Probable thiol peroxidase [tpx]. 4 167 38.386 T 14-09-2016 IPR002065 Putative thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 PAJ_RS07455 2d131572331844f7557dd8436336a7a0 167 SUPERFAMILY SSF52833 4 164 5.85E-42 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS07455 2d131572331844f7557dd8436336a7a0 167 PANTHER PTHR10681:SF81 1 167 1.2E-49 T 14-09-2016 PAJ_RS07455 2d131572331844f7557dd8436336a7a0 167 Gene3D G3DSA:3.40.30.10 4 167 3.4E-44 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS07455 2d131572331844f7557dd8436336a7a0 167 Pfam PF08534 Redoxin 20 163 6.1E-28 T 14-09-2016 IPR013740 Redoxin GO:0016491 PAJ_RS07455 2d131572331844f7557dd8436336a7a0 167 PANTHER PTHR10681 1 167 1.2E-49 T 14-09-2016 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 805 32.04 T 14-09-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 SMART SM00563 302 429 1.3E-27 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 PIRSF PIRSF000437 19 808 1.5E-302 T 14-09-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 PANTHER PTHR12563 146 805 0.0 T 14-09-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 PANTHER PTHR12563:SF14 1 117 0.0 T 14-09-2016 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 PANTHER PTHR12563 1 117 0.0 T 14-09-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 Pfam PF01553 Acyltransferase 284 426 1.5E-24 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 PIRSF PIRSF500064 3 808 0.0 T 14-09-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 PANTHER PTHR12563:SF14 146 805 0.0 T 14-09-2016 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 801 0.0 T 14-09-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PAJ_RS18905 ec2a8af7e0539b0e20d827834099bf7a 808 SUPERFAMILY SSF69593 248 490 7.19E-24 T 14-09-2016 PAJ_RS05095 e922f2c4b774dca5f8a192c3bd1133ac 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 1.8E-6 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS05095 e922f2c4b774dca5f8a192c3bd1133ac 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 1.8E-6 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS05095 e922f2c4b774dca5f8a192c3bd1133ac 190 Gene3D G3DSA:1.10.357.10 4 177 1.8E-29 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS05095 e922f2c4b774dca5f8a192c3bd1133ac 190 SUPERFAMILY SSF46689 3 77 1.65E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS05095 e922f2c4b774dca5f8a192c3bd1133ac 190 PANTHER PTHR30055:SF68 6 177 5.1E-64 T 14-09-2016 PAJ_RS05095 e922f2c4b774dca5f8a192c3bd1133ac 190 PANTHER PTHR30055 6 177 5.1E-64 T 14-09-2016 PAJ_RS05095 e922f2c4b774dca5f8a192c3bd1133ac 190 SUPERFAMILY SSF48498 75 179 6.67E-18 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS05095 e922f2c4b774dca5f8a192c3bd1133ac 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 54 1.2E-11 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 SUPERFAMILY SSF51658 1 278 7.46E-98 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 PANTHER PTHR21445:SF0 1 280 1.3E-147 T 14-09-2016 PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 14-09-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 2 276 7.3E-107 T 14-09-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 Gene3D G3DSA:3.20.20.150 1 277 1.3E-115 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 SMART SM00518 3 279 2.1E-123 T 14-09-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 14-09-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 PANTHER PTHR21445 1 280 1.3E-147 T 14-09-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 43.091 T 14-09-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 14-09-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 PAJ_RS10230 54d403594e4f8a62435a8413194b4bfd 280 Pfam PF01261 Xylose isomerase-like TIM barrel 20 239 3.1E-39 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS16780 9c793786393d10f504933f7f54b1b525 537 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 27 514 1.5E-234 T 14-09-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PAJ_RS16780 9c793786393d10f504933f7f54b1b525 537 Gene3D G3DSA:3.50.50.60 26 94 3.6E-22 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16780 9c793786393d10f504933f7f54b1b525 537 Gene3D G3DSA:3.50.50.60 169 350 3.6E-22 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16780 9c793786393d10f504933f7f54b1b525 537 SUPERFAMILY SSF51905 23 346 1.25E-24 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16780 9c793786393d10f504933f7f54b1b525 537 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 24 514 52.532 T 14-09-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PAJ_RS16780 9c793786393d10f504933f7f54b1b525 537 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 28 512 2.2E-208 T 14-09-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PAJ_RS16780 9c793786393d10f504933f7f54b1b525 537 PANTHER PTHR13847 23 537 1.0E-199 T 14-09-2016 PAJ_RS16780 9c793786393d10f504933f7f54b1b525 537 PANTHER PTHR13847:SF214 23 537 1.0E-199 T 14-09-2016 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 SUPERFAMILY SSF81338 10 258 1.7E-77 T 14-09-2016 IPR023271 Aquaporin-like PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 Pfam PF00230 Major intrinsic protein 5 252 4.1E-69 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 PANTHER PTHR19139 11 261 3.0E-96 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 ProSitePatterns PS00221 MIP family signature. 67 75 - T 14-09-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 Gene3D G3DSA:1.20.1080.10 5 259 5.4E-86 T 14-09-2016 IPR023271 Aquaporin-like PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 TIGRFAM TIGR00861 MIP: MIP family channel proteins 14 252 1.8E-69 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 PRINTS PR00783 Major intrinsic protein family signature 49 73 8.4E-52 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 PRINTS PR00783 Major intrinsic protein family signature 152 170 8.4E-52 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 PRINTS PR00783 Major intrinsic protein family signature 86 105 8.4E-52 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 PRINTS PR00783 Major intrinsic protein family signature 235 255 8.4E-52 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 PRINTS PR00783 Major intrinsic protein family signature 10 29 8.4E-52 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 PRINTS PR00783 Major intrinsic protein family signature 185 207 8.4E-52 T 14-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS17080 bbcd0e17adccf1f6d8116ae88dcdebf4 282 PANTHER PTHR19139:SF100 11 261 3.0E-96 T 14-09-2016 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 Gene3D G3DSA:1.10.10.60 2 57 3.7E-20 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 PANTHER PTHR11019 2 112 5.5E-52 T 14-09-2016 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 Pfam PF12833 Helix-turn-helix domain 27 105 8.1E-23 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 SMART SM00342 21 104 1.4E-33 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 PANTHER PTHR11019:SF133 2 112 5.5E-52 T 14-09-2016 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 1.4E-7 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 1.4E-7 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 SUPERFAMILY SSF46689 57 109 7.62E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 Gene3D G3DSA:1.10.10.60 58 110 2.3E-22 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 100 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS19040 1b183eac2e1242c4d2f8c35b1ce476f2 141 SUPERFAMILY SSF46689 5 55 3.87E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 14-09-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 Gene3D G3DSA:2.30.33.40 1 96 1.6E-31 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 PRINTS PR00297 10kDa chaperonin signature 25 46 6.7E-27 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 PRINTS PR00297 10kDa chaperonin signature 82 95 6.7E-27 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 PRINTS PR00297 10kDa chaperonin signature 3 18 6.7E-27 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 PRINTS PR00297 10kDa chaperonin signature 60 72 6.7E-27 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 1.1E-29 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 SMART SM00883 2 95 8.2E-47 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 23.458 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 SUPERFAMILY SSF50129 1 96 3.18E-30 T 14-09-2016 IPR011032 GroES-like PAJ_RS19620 392ca9af86de2507c43027864bddc2d5 97 PANTHER PTHR10772 1 96 9.7E-38 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PAJ_RS15060 46be4cfeaba33e7cbbff9e833660e8e6 329 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 49 62 - T 14-09-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 PAJ_RS15060 46be4cfeaba33e7cbbff9e833660e8e6 329 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 25 312 8.1E-76 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS15060 46be4cfeaba33e7cbbff9e833660e8e6 329 PANTHER PTHR10314 9 323 2.1E-144 T 14-09-2016 PAJ_RS15060 46be4cfeaba33e7cbbff9e833660e8e6 329 Gene3D G3DSA:3.40.50.1100 77 323 8.7E-73 T 14-09-2016 PAJ_RS15060 46be4cfeaba33e7cbbff9e833660e8e6 329 PANTHER PTHR10314:SF17 9 323 2.1E-144 T 14-09-2016 PAJ_RS15060 46be4cfeaba33e7cbbff9e833660e8e6 329 SUPERFAMILY SSF53686 10 321 3.93E-91 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS11690 e0020eb3c58044f39bd2a6571ad0eef9 199 Pfam PF03848 Tellurite resistance protein TehB 2 193 3.4E-82 T 14-09-2016 IPR015985 Tellurite resistance methyltransferase TehB-like domain PAJ_RS11690 e0020eb3c58044f39bd2a6571ad0eef9 199 PANTHER PTHR10108:SF927 4 185 2.7E-59 T 14-09-2016 PAJ_RS11690 e0020eb3c58044f39bd2a6571ad0eef9 199 Gene3D G3DSA:3.40.50.150 17 196 4.4E-29 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS11690 e0020eb3c58044f39bd2a6571ad0eef9 199 SUPERFAMILY SSF53335 12 178 4.22E-27 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS11690 e0020eb3c58044f39bd2a6571ad0eef9 199 PANTHER PTHR10108 4 185 2.7E-59 T 14-09-2016 PAJ_RS11690 e0020eb3c58044f39bd2a6571ad0eef9 199 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 1 196 5.0E-78 T 14-09-2016 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 PAJ_RS04890 559d02cc5271316f0d6b38764b9d62e7 314 Gene3D G3DSA:3.40.50.920 182 310 1.1E-31 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS04890 559d02cc5271316f0d6b38764b9d62e7 314 Gene3D G3DSA:3.40.50.970 6 181 3.8E-39 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS04890 559d02cc5271316f0d6b38764b9d62e7 314 Pfam PF02780 Transketolase, C-terminal domain 182 301 1.4E-26 T 14-09-2016 IPR033248 Transketolase, C-terminal domain PAJ_RS04890 559d02cc5271316f0d6b38764b9d62e7 314 PANTHER PTHR11624:SF2 9 310 1.3E-73 T 14-09-2016 PAJ_RS04890 559d02cc5271316f0d6b38764b9d62e7 314 SUPERFAMILY SSF52922 175 311 7.85E-30 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS04890 559d02cc5271316f0d6b38764b9d62e7 314 PANTHER PTHR11624 9 310 1.3E-73 T 14-09-2016 IPR033247 Transketolase family PAJ_RS04890 559d02cc5271316f0d6b38764b9d62e7 314 Pfam PF02779 Transketolase, pyrimidine binding domain 8 168 5.3E-18 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS04890 559d02cc5271316f0d6b38764b9d62e7 314 SUPERFAMILY SSF52518 5 180 7.62E-37 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS04890 559d02cc5271316f0d6b38764b9d62e7 314 SMART SM00861 5 170 3.4E-29 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 Pfam PF13091 PLD-like domain 284 428 6.3E-25 T 14-09-2016 IPR025202 Phospholipase D-like domain PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 Pfam PF13091 PLD-like domain 50 197 1.0E-15 T 14-09-2016 IPR025202 Phospholipase D-like domain PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 PANTHER PTHR21248:SF12 377 471 1.1E-191 T 14-09-2016 PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 SUPERFAMILY SSF56024 249 449 6.95E-33 T 14-09-2016 PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 SMART SM00155 138 165 0.1 T 14-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 SMART SM00155 376 403 6.5E-6 T 14-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 PANTHER PTHR21248 377 471 1.1E-191 T 14-09-2016 PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 PANTHER PTHR21248 4 360 1.1E-191 T 14-09-2016 PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 Gene3D G3DSA:3.30.870.10 20 201 1.7E-40 T 14-09-2016 PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 Gene3D G3DSA:3.30.870.10 227 449 1.1E-50 T 14-09-2016 PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 SUPERFAMILY SSF56024 11 207 2.92E-40 T 14-09-2016 PAJ_RS04310 5857c8c07da88f7c23aca3f0c1d6e4d7 486 PANTHER PTHR21248:SF12 4 360 1.1E-191 T 14-09-2016 PAJ_RS03820 a0a24e02cce281b2836d9b768e85b1bb 608 PANTHER PTHR10046:SF49 13 567 2.7E-144 T 14-09-2016 PAJ_RS03820 a0a24e02cce281b2836d9b768e85b1bb 608 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 456 532 1.7E-8 T 14-09-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 PAJ_RS03820 a0a24e02cce281b2836d9b768e85b1bb 608 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 483 502 2.4E-11 T 14-09-2016 PAJ_RS03820 a0a24e02cce281b2836d9b768e85b1bb 608 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 453 472 2.4E-11 T 14-09-2016 PAJ_RS03820 a0a24e02cce281b2836d9b768e85b1bb 608 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 370 386 2.4E-11 T 14-09-2016 PAJ_RS03820 a0a24e02cce281b2836d9b768e85b1bb 608 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 513 531 2.4E-11 T 14-09-2016 PAJ_RS03820 a0a24e02cce281b2836d9b768e85b1bb 608 Gene3D G3DSA:3.30.230.10 362 562 3.2E-33 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS03820 a0a24e02cce281b2836d9b768e85b1bb 608 PANTHER PTHR10046 13 567 2.7E-144 T 14-09-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 PAJ_RS03820 a0a24e02cce281b2836d9b768e85b1bb 608 Pfam PF13654 AAA domain 146 334 1.7E-19 T 14-09-2016 PAJ_RS03820 a0a24e02cce281b2836d9b768e85b1bb 608 SUPERFAMILY SSF54211 370 561 9.1E-35 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS00405 09923d723380cdee15b55a03186fda53 151 SUPERFAMILY SSF54523 7 113 2.04E-22 T 14-09-2016 PAJ_RS00405 09923d723380cdee15b55a03186fda53 151 Pfam PF00114 Pilin (bacterial filament) 36 129 2.6E-6 T 14-09-2016 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 PAJ_RS00405 09923d723380cdee15b55a03186fda53 151 Pfam PF13633 Prokaryotic N-terminal methylation site 4 30 6.7E-10 T 14-09-2016 IPR012902 Prokaryotic N-terminal methylation site PAJ_RS00405 09923d723380cdee15b55a03186fda53 151 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 14-09-2016 IPR012902 Prokaryotic N-terminal methylation site PAJ_RS00405 09923d723380cdee15b55a03186fda53 151 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.7E-8 T 14-09-2016 IPR012902 Prokaryotic N-terminal methylation site PAJ_RS00405 09923d723380cdee15b55a03186fda53 151 Gene3D G3DSA:3.30.700.10 7 138 6.2E-33 T 14-09-2016 PAJ_RS00405 09923d723380cdee15b55a03186fda53 151 PANTHER PTHR30093 1 61 3.7E-19 T 14-09-2016 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 SUPERFAMILY SSF46565 1 108 2.36E-35 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 Gene3D G3DSA:2.60.260.20 213 256 3.4E-22 T 14-09-2016 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 Gene3D G3DSA:2.60.260.20 109 142 3.4E-22 T 14-09-2016 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 14-09-2016 IPR018253 DnaJ domain, conserved site PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 352 9.2E-141 T 14-09-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 SUPERFAMILY SSF49493 261 346 1.14E-20 T 14-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 375 42.444 T 14-09-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 PANTHER PTHR24078 1 361 3.5E-169 T 14-09-2016 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 PANTHER PTHR24078:SF231 1 361 3.5E-169 T 14-09-2016 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 Pfam PF00684 DnaJ central domain 149 209 5.8E-15 T 14-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 Gene3D G3DSA:1.10.287.110 1 108 1.2E-36 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 Gene3D G3DSA:2.10.230.10 143 212 1.2E-25 T 14-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 Pfam PF01556 DnaJ C terminal domain 123 335 1.9E-44 T 14-09-2016 IPR002939 Chaperone DnaJ, C-terminal PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 SUPERFAMILY SSF49493 188 269 2.09E-22 T 14-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 SUPERFAMILY SSF49493 116 140 2.09E-22 T 14-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 PRINTS PR00625 DnaJ domain signature 42 62 1.5E-32 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 PRINTS PR00625 DnaJ domain signature 7 25 1.5E-32 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 PRINTS PR00625 DnaJ domain signature 25 40 1.5E-32 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 PRINTS PR00625 DnaJ domain signature 62 81 1.5E-32 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 SUPERFAMILY SSF57938 136 213 1.44E-23 T 14-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 Pfam PF00226 DnaJ domain 5 67 3.6E-27 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 Gene3D G3DSA:2.60.260.20 258 335 1.5E-21 T 14-09-2016 PAJ_RS00050 e776a40ac6539db1e89de924b283db1e 381 SMART SM00271 4 62 9.5E-30 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS09885 ced748c1512b559a954e90c65d98c282 278 SUPERFAMILY SSF53448 13 276 3.94E-26 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS09885 ced748c1512b559a954e90c65d98c282 278 PANTHER PTHR22916:SF27 13 275 4.5E-21 T 14-09-2016 PAJ_RS09885 ced748c1512b559a954e90c65d98c282 278 PANTHER PTHR22916 13 275 4.5E-21 T 14-09-2016 PAJ_RS09885 ced748c1512b559a954e90c65d98c282 278 Pfam PF00535 Glycosyl transferase family 2 23 133 3.7E-7 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS09885 ced748c1512b559a954e90c65d98c282 278 Gene3D G3DSA:3.90.550.10 13 242 2.0E-22 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS14435 dba5a440af5f6790cb0671961e16e526 268 Gene3D G3DSA:1.10.10.10 14 81 3.2E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14435 dba5a440af5f6790cb0671961e16e526 268 Gene3D G3DSA:3.30.450.40 90 266 1.2E-54 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS14435 dba5a440af5f6790cb0671961e16e526 268 SMART SM00346 22 111 1.7E-23 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS14435 dba5a440af5f6790cb0671961e16e526 268 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 19 264 8.0E-93 T 14-09-2016 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 PAJ_RS14435 dba5a440af5f6790cb0671961e16e526 268 PANTHER PTHR30136:SF10 1 267 1.4E-86 T 14-09-2016 PAJ_RS14435 dba5a440af5f6790cb0671961e16e526 268 SUPERFAMILY SSF55781 88 266 4.71E-48 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS14435 dba5a440af5f6790cb0671961e16e526 268 Pfam PF09339 IclR helix-turn-helix domain 24 72 5.0E-15 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS14435 dba5a440af5f6790cb0671961e16e526 268 Pfam PF01614 Bacterial transcriptional regulator 138 263 3.7E-31 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal PAJ_RS14435 dba5a440af5f6790cb0671961e16e526 268 PANTHER PTHR30136 1 267 1.4E-86 T 14-09-2016 PAJ_RS14435 dba5a440af5f6790cb0671961e16e526 268 SUPERFAMILY SSF46785 23 93 6.36E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 8.0E-34 T 14-09-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 SUPERFAMILY SSF50465 298 393 4.03E-36 T 14-09-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PANTHER PTHR23115:SF151 1 393 2.4E-293 T 14-09-2016 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Gene3D G3DSA:2.40.30.10 210 298 9.2E-36 T 14-09-2016 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Gene3D G3DSA:3.40.50.300 3 209 3.6E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.895 T 14-09-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PANTHER PTHR23115 1 393 2.4E-293 T 14-09-2016 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 146 1.3E-14 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 7.2E-19 T 14-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Gene3D G3DSA:2.40.30.10 300 393 7.0E-47 T 14-09-2016 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Pfam PF00009 Elongation factor Tu GTP binding domain 11 201 2.8E-58 T 14-09-2016 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.4E-25 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.4E-25 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.4E-25 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.4E-25 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.4E-25 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 SUPERFAMILY SSF52540 9 226 3.11E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 7.6E-236 T 14-09-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 PAJ_RS18650 c98718fe0185c3a8fa60cf3ffa27f3eb 394 SUPERFAMILY SSF50447 205 301 1.63E-30 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 8.0E-34 T 14-09-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 SUPERFAMILY SSF50465 298 393 4.03E-36 T 14-09-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PANTHER PTHR23115:SF151 1 393 2.4E-293 T 14-09-2016 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Gene3D G3DSA:2.40.30.10 210 298 9.2E-36 T 14-09-2016 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Gene3D G3DSA:3.40.50.300 3 209 3.6E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.895 T 14-09-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PANTHER PTHR23115 1 393 2.4E-293 T 14-09-2016 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 146 1.3E-14 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 7.2E-19 T 14-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Gene3D G3DSA:2.40.30.10 300 393 7.0E-47 T 14-09-2016 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 Pfam PF00009 Elongation factor Tu GTP binding domain 11 201 2.8E-58 T 14-09-2016 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.4E-25 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.4E-25 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.4E-25 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.4E-25 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.4E-25 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 SUPERFAMILY SSF52540 9 226 3.11E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 7.6E-236 T 14-09-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 PAJ_RS15880 c98718fe0185c3a8fa60cf3ffa27f3eb 394 SUPERFAMILY SSF50447 205 301 1.63E-30 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS19545 98291eff9a6757c499440681db469799 772 PANTHER PTHR11649 655 722 1.0E-256 T 14-09-2016 PAJ_RS19545 98291eff9a6757c499440681db469799 772 SUPERFAMILY SSF52540 4 169 2.54E-35 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19545 98291eff9a6757c499440681db469799 772 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 684 3.1E-201 T 14-09-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 PAJ_RS19545 98291eff9a6757c499440681db469799 772 PANTHER PTHR11649:SF37 655 722 1.0E-256 T 14-09-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 PAJ_RS19545 98291eff9a6757c499440681db469799 772 PANTHER PTHR11649:SF37 1 150 1.0E-256 T 14-09-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 PAJ_RS19545 98291eff9a6757c499440681db469799 772 PANTHER PTHR11649:SF37 259 608 1.0E-256 T 14-09-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 PAJ_RS19545 98291eff9a6757c499440681db469799 772 Pfam PF07664 Ferrous iron transport protein B C terminus 452 504 6.8E-23 T 14-09-2016 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 PAJ_RS19545 98291eff9a6757c499440681db469799 772 Pfam PF02421 Ferrous iron transport protein B 6 163 6.9E-56 T 14-09-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 PAJ_RS19545 98291eff9a6757c499440681db469799 772 Pfam PF07670 Nucleoside recognition 349 440 1.9E-14 T 14-09-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS19545 98291eff9a6757c499440681db469799 772 Pfam PF07670 Nucleoside recognition 509 687 7.1E-35 T 14-09-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS19545 98291eff9a6757c499440681db469799 772 PANTHER PTHR11649 1 150 1.0E-256 T 14-09-2016 PAJ_RS19545 98291eff9a6757c499440681db469799 772 PANTHER PTHR11649 259 608 1.0E-256 T 14-09-2016 PAJ_RS19545 98291eff9a6757c499440681db469799 772 Gene3D G3DSA:3.40.50.300 3 166 7.1E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16740 952bc055815877db65818c7550525ed6 342 Pfam PF00107 Zinc-binding dehydrogenase 173 299 1.4E-20 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS16740 952bc055815877db65818c7550525ed6 342 SUPERFAMILY SSF51735 140 304 3.33E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16740 952bc055815877db65818c7550525ed6 342 PANTHER PTHR11695 15 342 4.3E-111 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS16740 952bc055815877db65818c7550525ed6 342 SUPERFAMILY SSF50129 2 172 1.52E-51 T 14-09-2016 IPR011032 GroES-like PAJ_RS16740 952bc055815877db65818c7550525ed6 342 Gene3D G3DSA:3.90.180.10 1 165 1.4E-55 T 14-09-2016 IPR011032 GroES-like PAJ_RS16740 952bc055815877db65818c7550525ed6 342 PANTHER PTHR11695:SF38 15 342 4.3E-111 T 14-09-2016 PAJ_RS16740 952bc055815877db65818c7550525ed6 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 133 4.6E-33 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS16740 952bc055815877db65818c7550525ed6 342 SMART SM00829 10 338 2.4E-4 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS16740 952bc055815877db65818c7550525ed6 342 Gene3D G3DSA:3.40.50.720 166 284 5.2E-32 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10140 0dc75b6e44bba6280081d66ec863d8ab 239 PANTHER PTHR30336:SF0 2 239 8.7E-119 T 14-09-2016 PAJ_RS10140 0dc75b6e44bba6280081d66ec863d8ab 239 PIRSF PIRSF005011 1 239 4.0E-149 T 14-09-2016 IPR023604 Uncharacterised protein family SanA PAJ_RS10140 0dc75b6e44bba6280081d66ec863d8ab 239 PANTHER PTHR30336 2 239 8.7E-119 T 14-09-2016 PAJ_RS10140 0dc75b6e44bba6280081d66ec863d8ab 239 Gene3D G3DSA:3.40.50.620 42 170 1.8E-7 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS10140 0dc75b6e44bba6280081d66ec863d8ab 239 Pfam PF02698 DUF218 domain 48 170 4.3E-17 T 14-09-2016 IPR003848 Domain of unknown function DUF218 PAJ_RS13315 c98a465b88e8bb55dd7d34cafa7bff13 128 PANTHER PTHR11715:SF12 1 128 1.5E-71 T 14-09-2016 PAJ_RS13315 c98a465b88e8bb55dd7d34cafa7bff13 128 SUPERFAMILY SSF51230 4 127 6.81E-44 T 14-09-2016 IPR011053 Single hybrid motif PAJ_RS13315 c98a465b88e8bb55dd7d34cafa7bff13 128 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 30.985 T 14-09-2016 IPR002930 Glycine cleavage system H-protein PAJ_RS13315 c98a465b88e8bb55dd7d34cafa7bff13 128 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 14-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PAJ_RS13315 c98a465b88e8bb55dd7d34cafa7bff13 128 Pfam PF01597 Glycine cleavage H-protein 8 126 2.8E-46 T 14-09-2016 IPR002930 Glycine cleavage system H-protein PAJ_RS13315 c98a465b88e8bb55dd7d34cafa7bff13 128 PANTHER PTHR11715 1 128 1.5E-71 T 14-09-2016 IPR002930 Glycine cleavage system H-protein PAJ_RS13315 c98a465b88e8bb55dd7d34cafa7bff13 128 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 126 1.5E-55 T 14-09-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 PAJ_RS13315 c98a465b88e8bb55dd7d34cafa7bff13 128 Gene3D G3DSA:2.40.50.100 7 128 6.0E-50 T 14-09-2016 PAJ_RS19680 34912c614c0b7d4b80fd43425f4f8d11 375 Pfam PF03969 AFG1-like ATPase 5 370 2.6E-149 T 14-09-2016 IPR005654 ATPase, AFG1-like GO:0005524 PAJ_RS19680 34912c614c0b7d4b80fd43425f4f8d11 375 Hamap MF_01919 Cell division protein ZapE [zapE]. 4 375 53.56 T 14-09-2016 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 PAJ_RS19680 34912c614c0b7d4b80fd43425f4f8d11 375 PANTHER PTHR12169 1 375 2.4E-192 T 14-09-2016 IPR005654 ATPase, AFG1-like GO:0005524 PAJ_RS19680 34912c614c0b7d4b80fd43425f4f8d11 375 PANTHER PTHR12169:SF11 1 375 2.4E-192 T 14-09-2016 PAJ_RS19680 34912c614c0b7d4b80fd43425f4f8d11 375 SUPERFAMILY SSF52540 68 209 3.06E-12 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19680 34912c614c0b7d4b80fd43425f4f8d11 375 Gene3D G3DSA:3.40.50.300 8 185 3.1E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 SUPERFAMILY SSF51735 2 246 1.66E-72 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 246 2.4E-54 T 14-09-2016 PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 Gene3D G3DSA:3.40.50.720 3 247 2.3E-76 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 8.1E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 8.1E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 8.1E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 4.5E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.5E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 4.5E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.5E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 4.5E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 4.5E-39 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PANTHER PTHR24322 41 139 1.0E-45 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PANTHER PTHR24322 6 25 1.0E-45 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 PANTHER PTHR24322 156 190 1.0E-45 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13305 7281cd6fe678cdcf13629c30e87a45fe 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS02035 207802a7b258a87c57354018e992b07c 167 Pfam PF06711 Protein of unknown function (DUF1198) 1 142 5.6E-60 T 14-09-2016 IPR009587 Protein of unknown function DUF1198 PAJ_RS02035 207802a7b258a87c57354018e992b07c 167 ProDom PD093913 YICN MEMBRANE INNER EXPORTED 1 138 1.0E-32 T 14-09-2016 IPR009587 Protein of unknown function DUF1198 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 8 428 40.612 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 231 263 - T 14-09-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 Gene3D G3DSA:3.40.50.1980 31 241 3.0E-79 T 14-09-2016 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PANTHER PTHR21256:SF14 1 434 1.1E-289 T 14-09-2016 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 SUPERFAMILY SSF53720 10 428 6.08E-88 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PRINTS PR00083 Histidinol dehydrogenase signature 231 252 1.2E-98 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 1.2E-98 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PRINTS PR00083 Histidinol dehydrogenase signature 199 224 1.2E-98 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PRINTS PR00083 Histidinol dehydrogenase signature 253 272 1.2E-98 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 1.2E-98 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PRINTS PR00083 Histidinol dehydrogenase signature 110 137 1.2E-98 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PRINTS PR00083 Histidinol dehydrogenase signature 169 195 1.2E-98 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PRINTS PR00083 Histidinol dehydrogenase signature 37 61 1.2E-98 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PANTHER PTHR21256 1 434 1.1E-289 T 14-09-2016 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 Pfam PF00815 Histidinol dehydrogenase 29 428 1.6E-163 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 37 427 1.3E-158 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS09790 3067217d78136ccfd563e0cb13deda7e 435 PIRSF PIRSF000099 2 431 1.0E-165 T 14-09-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PAJ_RS15955 ed70dc7d262ee9deaeaa9b3c509eb202 279 PANTHER PTHR30468 1 279 1.9E-95 T 14-09-2016 PAJ_RS15955 ed70dc7d262ee9deaeaa9b3c509eb202 279 PANTHER PTHR30468:SF2 1 279 1.9E-95 T 14-09-2016 PAJ_RS15955 ed70dc7d262ee9deaeaa9b3c509eb202 279 Gene3D G3DSA:3.60.130.10 2 279 1.5E-95 T 14-09-2016 PAJ_RS15955 ed70dc7d262ee9deaeaa9b3c509eb202 279 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 7 272 1.9E-64 T 14-09-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 PAJ_RS15955 ed70dc7d262ee9deaeaa9b3c509eb202 279 SUPERFAMILY SSF51197 6 279 1.97E-93 T 14-09-2016 PAJ_RS18875 f8f7a4c1baa0f943fdae37d1b31b2574 306 Pfam PF01758 Sodium Bile acid symporter family 37 213 5.0E-39 T 14-09-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 PAJ_RS18875 f8f7a4c1baa0f943fdae37d1b31b2574 306 PANTHER PTHR10361 1 297 3.8E-88 T 14-09-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 PAJ_RS17765 f765f1efc2a6bf7fad9e82646bd98e9f 347 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 320 3.5E-37 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS17765 f765f1efc2a6bf7fad9e82646bd98e9f 347 PANTHER PTHR32196 22 345 4.5E-98 T 14-09-2016 PAJ_RS17765 f765f1efc2a6bf7fad9e82646bd98e9f 347 PANTHER PTHR32196:SF39 22 345 4.5E-98 T 14-09-2016 PAJ_RS18805 eeed14157863553fe85eee0eb1ee6eab 433 ProSitePatterns PS00161 Isocitrate lyase signature. 192 197 - T 14-09-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 PAJ_RS18805 eeed14157863553fe85eee0eb1ee6eab 433 PIRSF PIRSF001362 1 433 3.0E-221 T 14-09-2016 PAJ_RS18805 eeed14157863553fe85eee0eb1ee6eab 433 PANTHER PTHR21631 1 433 1.7E-169 T 14-09-2016 PAJ_RS18805 eeed14157863553fe85eee0eb1ee6eab 433 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 7 254 2.7E-114 T 14-09-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 PAJ_RS18805 eeed14157863553fe85eee0eb1ee6eab 433 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 255 433 2.4E-86 T 14-09-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 PAJ_RS18805 eeed14157863553fe85eee0eb1ee6eab 433 Pfam PF00463 Isocitrate lyase family 256 433 1.7E-47 T 14-09-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 PAJ_RS18805 eeed14157863553fe85eee0eb1ee6eab 433 Pfam PF00463 Isocitrate lyase family 7 254 3.2E-60 T 14-09-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 PAJ_RS18805 eeed14157863553fe85eee0eb1ee6eab 433 SUPERFAMILY SSF51621 4 416 9.42E-151 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS18805 eeed14157863553fe85eee0eb1ee6eab 433 Gene3D G3DSA:3.20.20.60 4 416 3.7E-166 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS07535 552224f83b04fff21e8456187d135e48 373 SUPERFAMILY SSF69118 81 190 1.15E-13 T 14-09-2016 IPR029032 AhpD-like PAJ_RS07535 552224f83b04fff21e8456187d135e48 373 SUPERFAMILY SSF69118 215 370 9.0E-16 T 14-09-2016 IPR029032 AhpD-like PAJ_RS07535 552224f83b04fff21e8456187d135e48 373 Gene3D G3DSA:1.20.1290.10 276 370 5.4E-13 T 14-09-2016 IPR029032 AhpD-like PAJ_RS07535 552224f83b04fff21e8456187d135e48 373 Gene3D G3DSA:1.20.1290.10 84 195 9.3E-15 T 14-09-2016 IPR029032 AhpD-like PAJ_RS02945 a80237784769c270cabaabc66f59a47b 430 Gene3D G3DSA:3.90.1150.10 3 62 3.0E-60 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS02945 a80237784769c270cabaabc66f59a47b 430 Gene3D G3DSA:3.90.1150.10 333 424 3.0E-60 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS02945 a80237784769c270cabaabc66f59a47b 430 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 2 425 49.197 T 14-09-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 PAJ_RS02945 a80237784769c270cabaabc66f59a47b 430 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 243 280 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS02945 a80237784769c270cabaabc66f59a47b 430 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 14 422 4.3E-177 T 14-09-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 PAJ_RS02945 a80237784769c270cabaabc66f59a47b 430 PANTHER PTHR11986 3 430 7.3E-206 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS02945 a80237784769c270cabaabc66f59a47b 430 SUPERFAMILY SSF53383 5 424 5.44E-132 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS02945 a80237784769c270cabaabc66f59a47b 430 Pfam PF00202 Aminotransferase class-III 28 422 1.3E-124 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS02945 a80237784769c270cabaabc66f59a47b 430 Gene3D G3DSA:3.40.640.10 63 330 5.2E-91 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS02945 a80237784769c270cabaabc66f59a47b 430 PANTHER PTHR11986:SF8 3 430 7.3E-206 T 14-09-2016 PAJ_RS08530 90b512836564eb588cbf1212918f584d 295 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 14-09-2016 IPR000540 Flagellar motor protein MotA, conserved site PAJ_RS08530 90b512836564eb588cbf1212918f584d 295 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 2 281 1.1E-119 T 14-09-2016 IPR022522 Flagellar motor stator, MotA PAJ_RS08530 90b512836564eb588cbf1212918f584d 295 PANTHER PTHR30433 1 289 1.3E-186 T 14-09-2016 PAJ_RS08530 90b512836564eb588cbf1212918f584d 295 PANTHER PTHR30433:SF4 1 289 1.3E-186 T 14-09-2016 IPR022522 Flagellar motor stator, MotA PAJ_RS08530 90b512836564eb588cbf1212918f584d 295 Pfam PF01618 MotA/TolQ/ExbB proton channel family 139 239 3.7E-10 T 14-09-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PAJ_RS09330 0628b303274a7d0696c4ac4c60838538 431 PANTHER PTHR11119 1 418 2.6E-174 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS09330 0628b303274a7d0696c4ac4c60838538 431 PIRSF PIRSF005353 1 431 2.6E-179 T 14-09-2016 IPR026033 Purine permease PbuG-like PAJ_RS09330 0628b303274a7d0696c4ac4c60838538 431 Pfam PF00860 Permease family 18 391 2.2E-56 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS09330 0628b303274a7d0696c4ac4c60838538 431 PANTHER PTHR11119:SF9 1 418 2.6E-174 T 14-09-2016 IPR029940 AzgA purine transporter GO:0005345|GO:0006863 PAJ_RS15500 153244383204f84949783401ff1007a6 650 PANTHER PTHR30509:SF10 5 251 0.0 T 14-09-2016 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0006810 PAJ_RS15500 153244383204f84949783401ff1007a6 650 PANTHER PTHR30509:SF10 300 633 0.0 T 14-09-2016 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0006810 PAJ_RS15500 153244383204f84949783401ff1007a6 650 PANTHER PTHR30509 300 633 0.0 T 14-09-2016 PAJ_RS15500 153244383204f84949783401ff1007a6 650 Hamap MF_01545 p-hydroxybenzoic acid efflux pump subunit AaeB [aaeB]. 1 648 51.377 T 14-09-2016 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0006810 PAJ_RS15500 153244383204f84949783401ff1007a6 650 Pfam PF04632 Fusaric acid resistance protein family 5 645 5.9E-147 T 14-09-2016 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 PAJ_RS15500 153244383204f84949783401ff1007a6 650 PANTHER PTHR30509 5 251 0.0 T 14-09-2016 PAJ_RS20505 2ce8e40fb14ead4610b5ea7f10b196b9 226 PANTHER PTHR33121:SF6 16 218 1.2E-39 T 14-09-2016 PAJ_RS20505 2ce8e40fb14ead4610b5ea7f10b196b9 226 Pfam PF00563 EAL domain 16 217 5.4E-12 T 14-09-2016 IPR001633 EAL domain PAJ_RS20505 2ce8e40fb14ead4610b5ea7f10b196b9 226 Gene3D G3DSA:3.20.20.450 16 218 1.1E-11 T 14-09-2016 IPR001633 EAL domain PAJ_RS20505 2ce8e40fb14ead4610b5ea7f10b196b9 226 SUPERFAMILY SSF141868 12 218 6.67E-20 T 14-09-2016 IPR001633 EAL domain PAJ_RS20505 2ce8e40fb14ead4610b5ea7f10b196b9 226 PANTHER PTHR33121 16 218 1.2E-39 T 14-09-2016 PAJ_RS20505 2ce8e40fb14ead4610b5ea7f10b196b9 226 SMART SM00052 6 224 0.0024 T 14-09-2016 IPR001633 EAL domain PAJ_RS20850 2574d328e085e80f37dc3b0523dfe382 705 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 167 1.4E-20 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS20850 2574d328e085e80f37dc3b0523dfe382 705 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 65 705 6.0E-148 T 14-09-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PAJ_RS20850 2574d328e085e80f37dc3b0523dfe382 705 Pfam PF00593 TonB dependent receptor 471 703 3.7E-26 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS20850 2574d328e085e80f37dc3b0523dfe382 705 Gene3D G3DSA:2.40.170.20 182 705 3.3E-135 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS20850 2574d328e085e80f37dc3b0523dfe382 705 Gene3D G3DSA:2.170.130.10 42 175 7.7E-34 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS20850 2574d328e085e80f37dc3b0523dfe382 705 PANTHER PTHR32552:SF21 50 705 3.9E-214 T 14-09-2016 PAJ_RS20850 2574d328e085e80f37dc3b0523dfe382 705 SUPERFAMILY SSF56935 55 705 3.4E-128 T 14-09-2016 PAJ_RS20850 2574d328e085e80f37dc3b0523dfe382 705 PANTHER PTHR32552 50 705 3.9E-214 T 14-09-2016 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 PANTHER PTHR34217:SF1 2 494 2.1E-251 T 14-09-2016 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 PIRSF PIRSF006615 1 495 3.7E-197 T 14-09-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 SUPERFAMILY SSF55486 3 493 5.13E-123 T 14-09-2016 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 PANTHER PTHR34217 2 494 2.1E-251 T 14-09-2016 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 242 261 5.7E-45 T 14-09-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 399 420 5.7E-45 T 14-09-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 329 348 5.7E-45 T 14-09-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 146 166 5.7E-45 T 14-09-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 262 281 5.7E-45 T 14-09-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 444 462 5.7E-45 T 14-09-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 289 305 5.7E-45 T 14-09-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 PAJ_RS07375 de2e28372f99c49e94a6dbb3f44d8b02 495 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 11 492 6.3E-97 T 14-09-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 PAJ_RS11615 d5c52c234c663882f097b7149635afb7 293 PANTHER PTHR30193 2 282 1.3E-45 T 14-09-2016 PAJ_RS11615 d5c52c234c663882f097b7149635afb7 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 284 3.1E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11615 d5c52c234c663882f097b7149635afb7 293 Gene3D G3DSA:1.10.3720.10 18 274 2.1E-48 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11615 d5c52c234c663882f097b7149635afb7 293 SUPERFAMILY SSF161098 27 286 7.01E-53 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS20660 d1fb5a7817938bb1118d18e6699173df 316 Gene3D G3DSA:2.130.10.10 68 307 5.4E-29 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PAJ_RS20660 d1fb5a7817938bb1118d18e6699173df 316 SUPERFAMILY SSF51004 12 307 2.88E-32 T 14-09-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain PAJ_RS03260 39ef7636f9fd4ced5e295180b9323866 307 PANTHER PTHR13393 11 301 2.8E-117 T 14-09-2016 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 PAJ_RS03260 39ef7636f9fd4ced5e295180b9323866 307 Pfam PF05971 Protein of unknown function (DUF890) 8 296 5.6E-115 T 14-09-2016 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 PAJ_RS03260 39ef7636f9fd4ced5e295180b9323866 307 PANTHER PTHR13393:SF0 11 301 2.8E-117 T 14-09-2016 PAJ_RS03260 39ef7636f9fd4ced5e295180b9323866 307 SUPERFAMILY SSF53335 45 296 8.36E-28 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03260 39ef7636f9fd4ced5e295180b9323866 307 PIRSF PIRSF029038 1 307 1.3E-127 T 14-09-2016 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 PAJ_RS03260 39ef7636f9fd4ced5e295180b9323866 307 Gene3D G3DSA:3.40.50.150 65 196 2.3E-13 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03260 39ef7636f9fd4ced5e295180b9323866 307 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 7 299 48.929 T 14-09-2016 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 PAJ_RS02405 febd79cc9bfbfb1c7a817445995a2693 255 PANTHER PTHR23088:SF27 3 255 9.1E-87 T 14-09-2016 PAJ_RS02405 febd79cc9bfbfb1c7a817445995a2693 255 PANTHER PTHR23088 3 255 9.1E-87 T 14-09-2016 PAJ_RS02405 febd79cc9bfbfb1c7a817445995a2693 255 SUPERFAMILY SSF56317 3 244 2.49E-65 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PAJ_RS02405 febd79cc9bfbfb1c7a817445995a2693 255 Pfam PF00795 Carbon-nitrogen hydrolase 3 235 4.6E-44 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PAJ_RS02405 febd79cc9bfbfb1c7a817445995a2693 255 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 133 153 - T 14-09-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site PAJ_RS02405 febd79cc9bfbfb1c7a817445995a2693 255 Gene3D G3DSA:3.60.110.10 3 246 1.2E-69 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PAJ_RS16470 7c7ec5dd590a16b4a88f49a20c1d3638 526 PANTHER PTHR33121 216 515 4.8E-101 T 14-09-2016 PAJ_RS16470 7c7ec5dd590a16b4a88f49a20c1d3638 526 Pfam PF00563 EAL domain 271 503 1.3E-60 T 14-09-2016 IPR001633 EAL domain PAJ_RS16470 7c7ec5dd590a16b4a88f49a20c1d3638 526 Pfam PF12792 CSS motif domain associated with EAL 40 240 2.8E-30 T 14-09-2016 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain PAJ_RS16470 7c7ec5dd590a16b4a88f49a20c1d3638 526 SMART SM00052 264 508 1.1E-83 T 14-09-2016 IPR001633 EAL domain PAJ_RS16470 7c7ec5dd590a16b4a88f49a20c1d3638 526 PANTHER PTHR33121:SF1 216 515 4.8E-101 T 14-09-2016 PAJ_RS16470 7c7ec5dd590a16b4a88f49a20c1d3638 526 Gene3D G3DSA:3.20.20.450 268 515 2.3E-73 T 14-09-2016 IPR001633 EAL domain PAJ_RS16470 7c7ec5dd590a16b4a88f49a20c1d3638 526 SUPERFAMILY SSF141868 270 516 2.35E-71 T 14-09-2016 IPR001633 EAL domain PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 Gene3D G3DSA:3.40.50.2300 175 337 5.5E-40 T 14-09-2016 PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 Gene3D G3DSA:1.10.260.40 7 68 1.6E-23 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 SMART SM00354 6 79 2.8E-32 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 SUPERFAMILY SSF53822 66 330 1.02E-48 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 Pfam PF13377 Periplasmic binding protein-like domain 175 335 1.6E-14 T 14-09-2016 PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 SUPERFAMILY SSF47413 7 64 7.74E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 PANTHER PTHR30146 6 335 1.7E-79 T 14-09-2016 PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 56 1.2E-16 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 8 333 4.7E-129 T 14-09-2016 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS19310 db9eedacf4b3d959c3854d96454c4009 338 Gene3D G3DSA:3.40.50.2300 69 174 3.3E-29 T 14-09-2016 PAJ_RS05870 333527552a1ff479f4b5001d05942651 248 Gene3D G3DSA:3.40.50.300 1 237 7.4E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05870 333527552a1ff479f4b5001d05942651 248 SUPERFAMILY SSF52540 2 231 3.15E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05870 333527552a1ff479f4b5001d05942651 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS05870 333527552a1ff479f4b5001d05942651 248 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 5.0E-115 T 14-09-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 PAJ_RS05870 333527552a1ff479f4b5001d05942651 248 PANTHER PTHR24220 3 248 1.3E-130 T 14-09-2016 PAJ_RS05870 333527552a1ff479f4b5001d05942651 248 PANTHER PTHR24220:SF85 3 248 1.3E-130 T 14-09-2016 PAJ_RS05870 333527552a1ff479f4b5001d05942651 248 SMART SM00382 26 223 2.0E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS05870 333527552a1ff479f4b5001d05942651 248 Pfam PF00005 ABC transporter 17 172 1.6E-21 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 9 1172 0.0 T 14-09-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Gene3D G3DSA:3.40.50.300 729 860 2.6E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Gene3D G3DSA:3.40.50.300 451 580 2.6E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 PANTHER PTHR11070 794 1168 0.0 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 PANTHER PTHR11070 119 216 0.0 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 PANTHER PTHR11070 300 487 0.0 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 PANTHER PTHR11070 1 90 0.0 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Pfam PF13361 UvrD-like helicase C-terminal domain 443 808 7.2E-16 T 14-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Gene3D G3DSA:3.40.50.300 350 450 6.1E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Gene3D G3DSA:3.40.50.300 11 83 6.1E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Gene3D G3DSA:3.40.50.300 121 150 6.1E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 PANTHER PTHR11070 512 774 0.0 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Pfam PF00580 UvrD/REP helicase N-terminal domain 6 436 9.3E-61 T 14-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 SUPERFAMILY SSF52980 899 1173 4.29E-94 T 14-09-2016 IPR011335 Restriction endonuclease type II-like PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Gene3D G3DSA:3.90.320.10 891 1175 6.0E-106 T 14-09-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Gene3D G3DSA:1.10.3170.10 157 348 6.2E-63 T 14-09-2016 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 PANTHER PTHR11070:SF23 512 774 0.0 T 14-09-2016 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 PANTHER PTHR11070:SF23 300 487 0.0 T 14-09-2016 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 6 1173 15.295 T 14-09-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 PANTHER PTHR11070:SF23 794 1168 0.0 T 14-09-2016 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 PANTHER PTHR11070:SF23 119 216 0.0 T 14-09-2016 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 PANTHER PTHR11070:SF23 1 90 0.0 T 14-09-2016 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 Gene3D G3DSA:1.10.486.10 583 728 4.4E-53 T 14-09-2016 PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 SUPERFAMILY SSF52540 119 203 4.29E-108 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 SUPERFAMILY SSF52540 14 81 4.29E-108 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13150 c3c80be07638389365c14cb46c16ee1f 1179 SUPERFAMILY SSF52540 325 819 4.29E-108 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 PANTHER PTHR32092:SF7 1 440 3.2E-283 T 14-09-2016 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 SUPERFAMILY SSF51735 3 163 3.19E-52 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 Gene3D G3DSA:3.40.50.720 1 165 9.4E-65 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 Pfam PF02056 Family 4 glycosyl hydrolase 6 184 1.1E-64 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 138 155 1.5E-58 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 191 203 1.5E-58 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 1.5E-58 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 95 108 1.5E-58 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 74 90 1.5E-58 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 164 175 1.5E-58 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 109 129 1.5E-58 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 SUPERFAMILY SSF56327 168 439 6.65E-92 T 14-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 138 169 - T 14-09-2016 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 PANTHER PTHR32092 1 440 3.2E-283 T 14-09-2016 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 195 415 2.1E-51 T 14-09-2016 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 PAJ_RS08265 d5a82ab961c37a9e630f486b482069c6 440 Gene3D G3DSA:3.90.110.10 167 437 2.0E-101 T 14-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 PAJ_RS09050 dbd4d11877051735cb3aa5f04a1d9fd1 145 Pfam PF13599 Pentapeptide repeats (9 copies) 77 125 1.3E-8 T 14-09-2016 IPR001646 Pentapeptide repeat PAJ_RS09050 dbd4d11877051735cb3aa5f04a1d9fd1 145 SUPERFAMILY SSF141571 11 122 9.42E-13 T 14-09-2016 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 PIRSF PIRSF000774 1 478 1.7E-150 T 14-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 PANTHER PTHR32248 1 478 3.1E-183 T 14-09-2016 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 Pfam PF04963 Sigma-54 factor, core binding domain 115 304 7.8E-62 T 14-09-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 475 6.2E-158 T 14-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 Pfam PF04552 Sigma-54, DNA binding domain 318 476 4.7E-70 T 14-09-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 PANTHER PTHR32248:SF4 1 478 3.1E-183 T 14-09-2016 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 8.9E-15 T 14-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 456 463 - T 14-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 PRINTS PR00045 Sigma-54 factor signature 393 404 1.5E-31 T 14-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 PRINTS PR00045 Sigma-54 factor signature 451 469 1.5E-31 T 14-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 PRINTS PR00045 Sigma-54 factor signature 187 204 1.5E-31 T 14-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 PRINTS PR00045 Sigma-54 factor signature 377 389 1.5E-31 T 14-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS19745 2dd198e604d91f02d35cd7bf16fa1b52 478 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 365 384 - T 14-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PAJ_RS16610 a683afec538654240ac12dfa67068c48 257 Gene3D G3DSA:3.40.190.80 167 218 5.8E-5 T 14-09-2016 PAJ_RS16610 a683afec538654240ac12dfa67068c48 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 78 94 1.4E-12 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS16610 a683afec538654240ac12dfa67068c48 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 1.4E-12 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS16610 a683afec538654240ac12dfa67068c48 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 202 226 1.4E-12 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS16610 a683afec538654240ac12dfa67068c48 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 1.4E-12 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS16610 a683afec538654240ac12dfa67068c48 257 SUPERFAMILY SSF56655 2 220 6.41E-52 T 14-09-2016 PAJ_RS16610 a683afec538654240ac12dfa67068c48 257 PANTHER PTHR20854 1 218 6.1E-43 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS16610 a683afec538654240ac12dfa67068c48 257 Gene3D G3DSA:3.30.540.10 2 138 9.0E-40 T 14-09-2016 PAJ_RS16610 a683afec538654240ac12dfa67068c48 257 Pfam PF00459 Inositol monophosphatase family 2 218 2.5E-38 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS16610 a683afec538654240ac12dfa67068c48 257 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 78 91 - T 14-09-2016 IPR020583 Inositol monophosphatase, metal-binding site PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 SMART SM00387 345 455 1.3E-32 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 SUPERFAMILY SSF55874 289 454 1.7E-37 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 PANTHER PTHR24423 1 134 7.1E-250 T 14-09-2016 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 PANTHER PTHR24423 178 454 7.1E-250 T 14-09-2016 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 2.7E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 2.7E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 2.7E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 452 2.7E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 82 145 2.5E-10 T 14-09-2016 IPR032404 Two-component sensor protein CpxA, periplasmic domain PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 SUPERFAMILY SSF47384 224 299 6.08E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 PANTHER PTHR24423:SF553 178 454 7.1E-250 T 14-09-2016 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 Pfam PF00672 HAMP domain 165 234 7.9E-13 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 453 2.1E-18 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 SMART SM00304 184 237 4.0E-9 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 298 1.2E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 Gene3D G3DSA:3.30.565.10 304 455 2.4E-38 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 Gene3D G3DSA:1.10.287.130 228 296 6.6E-18 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 SMART SM00388 238 300 3.8E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17155 72f32a391370cd5fe7283cf88d5ac4cc 459 PANTHER PTHR24423:SF553 1 134 7.1E-250 T 14-09-2016 PAJ_RS05520 f1bfd7b2aef91790f488a9ce0440ccc6 284 Gene3D G3DSA:3.20.20.70 18 281 1.8E-106 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS05520 f1bfd7b2aef91790f488a9ce0440ccc6 284 PANTHER PTHR21057 1 284 1.6E-225 T 14-09-2016 PAJ_RS05520 f1bfd7b2aef91790f488a9ce0440ccc6 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 4.5E-118 T 14-09-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PAJ_RS05520 f1bfd7b2aef91790f488a9ce0440ccc6 284 SUPERFAMILY SSF51569 3 279 1.19E-103 T 14-09-2016 PAJ_RS05520 f1bfd7b2aef91790f488a9ce0440ccc6 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.241 T 14-09-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PAJ_RS05520 f1bfd7b2aef91790f488a9ce0440ccc6 284 PANTHER PTHR21057:SF6 1 284 1.6E-225 T 14-09-2016 PAJ_RS05520 f1bfd7b2aef91790f488a9ce0440ccc6 284 Pfam PF00793 DAHP synthetase I family 10 275 4.7E-69 T 14-09-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PAJ_RS05005 4318d833a7ff24e3a07eeb6395386dd4 845 PANTHER PTHR38344:SF1 5 835 2.4E-223 T 14-09-2016 PAJ_RS05005 4318d833a7ff24e3a07eeb6395386dd4 845 PANTHER PTHR38344 5 835 2.4E-223 T 14-09-2016 PAJ_RS05005 4318d833a7ff24e3a07eeb6395386dd4 845 Hamap MF_01871 UPF0753 protein . 28 835 23.038 T 14-09-2016 IPR018752 Uncharacterised protein family UPF0753 PAJ_RS05005 4318d833a7ff24e3a07eeb6395386dd4 845 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 34 822 3.0E-255 T 14-09-2016 IPR018752 Uncharacterised protein family UPF0753 PAJ_RS20120 cf1b17254ef082c877804ae484c84ef0 116 PIRSF PIRSF034961 3 116 5.8E-30 T 14-09-2016 IPR014593 Uncharacterised conserved protein UCP034961, SH3-2 PAJ_RS20120 cf1b17254ef082c877804ae484c84ef0 116 SUPERFAMILY SSF50044 4 61 9.38E-7 T 14-09-2016 IPR001452 SH3 domain GO:0005515 PAJ_RS20120 cf1b17254ef082c877804ae484c84ef0 116 Gene3D G3DSA:2.30.30.40 10 64 8.3E-5 T 14-09-2016 PAJ_RS20120 cf1b17254ef082c877804ae484c84ef0 116 Gene3D G3DSA:2.30.30.40 65 115 3.9E-8 T 14-09-2016 PAJ_RS20120 cf1b17254ef082c877804ae484c84ef0 116 SUPERFAMILY SSF50044 61 115 6.3E-10 T 14-09-2016 IPR001452 SH3 domain GO:0005515 PAJ_RS20120 cf1b17254ef082c877804ae484c84ef0 116 SMART SM00326 63 115 8.4E-5 T 14-09-2016 IPR001452 SH3 domain GO:0005515 PAJ_RS20120 cf1b17254ef082c877804ae484c84ef0 116 SMART SM00326 3 61 0.31 T 14-09-2016 IPR001452 SH3 domain GO:0005515 PAJ_RS20120 cf1b17254ef082c877804ae484c84ef0 116 Pfam PF07653 Variant SH3 domain 66 111 4.0E-5 T 14-09-2016 IPR011511 Variant SH3 domain PAJ_RS20120 cf1b17254ef082c877804ae484c84ef0 116 Pfam PF07653 Variant SH3 domain 6 56 3.8E-5 T 14-09-2016 IPR011511 Variant SH3 domain PAJ_RS13095 68e5420a6596b173b2bb19fc7b071abc 402 Pfam PF00266 Aminotransferase class-V 21 388 1.5E-133 T 14-09-2016 IPR000192 Aminotransferase class V domain PAJ_RS13095 68e5420a6596b173b2bb19fc7b071abc 402 Gene3D G3DSA:3.90.1150.10 281 393 5.1E-20 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS13095 68e5420a6596b173b2bb19fc7b071abc 402 PANTHER PTHR11601:SF44 1 402 2.4E-240 T 14-09-2016 PAJ_RS13095 68e5420a6596b173b2bb19fc7b071abc 402 Gene3D G3DSA:3.40.640.10 32 280 7.0E-75 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS13095 68e5420a6596b173b2bb19fc7b071abc 402 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 4 401 1.2E-212 T 14-09-2016 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 PAJ_RS13095 68e5420a6596b173b2bb19fc7b071abc 402 SUPERFAMILY SSF53383 5 396 2.99E-109 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS13095 68e5420a6596b173b2bb19fc7b071abc 402 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 213 232 - T 14-09-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PAJ_RS13095 68e5420a6596b173b2bb19fc7b071abc 402 PANTHER PTHR11601 1 402 2.4E-240 T 14-09-2016 PAJ_RS12460 8c24c8356dd386b415f63b1deef1d2c0 276 SMART SM00382 28 235 3.1E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS12460 8c24c8356dd386b415f63b1deef1d2c0 276 PANTHER PTHR24220:SF442 6 248 1.4E-87 T 14-09-2016 PAJ_RS12460 8c24c8356dd386b415f63b1deef1d2c0 276 PANTHER PTHR24220 6 248 1.4E-87 T 14-09-2016 PAJ_RS12460 8c24c8356dd386b415f63b1deef1d2c0 276 SUPERFAMILY SSF52540 15 239 1.18E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12460 8c24c8356dd386b415f63b1deef1d2c0 276 Pfam PF00005 ABC transporter 21 178 7.9E-22 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS12460 8c24c8356dd386b415f63b1deef1d2c0 276 Gene3D G3DSA:3.40.50.300 6 248 2.9E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15935 e122c986505c5a76bddcd6d56834f073 64 Pfam PF09526 Probable metal-binding protein (DUF2387) 1 54 3.2E-20 T 14-09-2016 IPR012658 Conserved hypothetical protein CHP02443 PAJ_RS15935 e122c986505c5a76bddcd6d56834f073 64 Gene3D G3DSA:3.30.50.10 9 44 1.3E-4 T 14-09-2016 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 PAJ_RS15935 e122c986505c5a76bddcd6d56834f073 64 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 2 58 8.7E-31 T 14-09-2016 IPR012658 Conserved hypothetical protein CHP02443 PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 99 2.0E-44 T 14-09-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 32.117 T 14-09-2016 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 5 150 7.2E-65 T 14-09-2016 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 Gene3D G3DSA:3.30.70.140 2 97 1.0E-37 T 14-09-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 SUPERFAMILY SSF54893 2 100 1.24E-35 T 14-09-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 SUPERFAMILY SSF57825 102 150 4.97E-15 T 14-09-2016 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 Gene3D G3DSA:2.30.30.20 101 150 7.7E-22 T 14-09-2016 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 102 149 2.5E-17 T 14-09-2016 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 PANTHER PTHR35805 2 154 5.5E-75 T 14-09-2016 PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 95 5.4E-31 T 14-09-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal PAJ_RS20060 278441d4909e96c00429b0ed6a8f00fa 154 PANTHER PTHR35805:SF1 2 154 5.5E-75 T 14-09-2016 PAJ_RS05555 a3f9810fef00808777dc511cf60e569c 375 Pfam PF00498 FHA domain 25 93 6.5E-10 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 PAJ_RS05555 a3f9810fef00808777dc511cf60e569c 375 SUPERFAMILY SSF49879 8 102 3.63E-18 T 14-09-2016 IPR008984 SMAD/FHA domain GO:0005515 PAJ_RS05555 a3f9810fef00808777dc511cf60e569c 375 Gene3D G3DSA:2.60.200.20 13 102 3.5E-12 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 PAJ_RS05555 a3f9810fef00808777dc511cf60e569c 375 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 158 362 2.1E-40 T 14-09-2016 IPR017735 Type VI secretion system, FHA domain-containing protein PAJ_RS18965 ec5f1c9b91f486b970297cdd408e8eab 204 PANTHER PTHR33545 1 204 3.0E-52 T 14-09-2016 PAJ_RS18965 ec5f1c9b91f486b970297cdd408e8eab 204 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 19 194 1.8E-31 T 14-09-2016 IPR003740 Uncharacterised membrane protein YitT PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 3.4E-24 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 3.4E-24 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 3.4E-24 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 47 63 3.4E-24 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 Gene3D G3DSA:1.10.10.10 3 137 5.4E-35 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 SUPERFAMILY SSF46785 2 137 1.06E-32 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 PANTHER PTHR33164:SF16 5 142 1.0E-25 T 14-09-2016 PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 Hamap MF_01819 Transcriptional regulator SlyA [slyA]. 1 143 38.259 T 14-09-2016 IPR023071 Transcriptional regulator, SlyA PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 Pfam PF01047 MarR family 29 87 7.0E-18 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 ProSitePatterns PS01117 MarR-type HTH domain signature. 62 96 - T 14-09-2016 IPR023187 Transcriptional regulator MarR-type, conserved site PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 SMART SM00347 22 123 6.1E-27 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS06010 b63602bb0578160c999f8f9ec02ad9a1 145 PANTHER PTHR33164 5 142 1.0E-25 T 14-09-2016 PAJ_RS17345 dc010f9b5db6f89f2a7357fc6849b85c 172 ProDom PD037484 CAPSID DETERMINATION SIZE HEAD GLYCOPROTEIN SID MORPHOGENESIS CP-933I ENCODED LATE 5 154 2.0E-6 T 14-09-2016 PAJ_RS13755 6015df2b89f05ea95c5da7d523eec361 296 PANTHER PTHR32322 5 291 3.4E-69 T 14-09-2016 PAJ_RS13755 6015df2b89f05ea95c5da7d523eec361 296 PANTHER PTHR32322:SF9 5 291 3.4E-69 T 14-09-2016 PAJ_RS13755 6015df2b89f05ea95c5da7d523eec361 296 Pfam PF00892 EamA-like transporter family 141 278 1.6E-14 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS13755 6015df2b89f05ea95c5da7d523eec361 296 Pfam PF00892 EamA-like transporter family 6 131 2.5E-17 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS13755 6015df2b89f05ea95c5da7d523eec361 296 SUPERFAMILY SSF103481 202 282 1.01E-12 T 14-09-2016 PAJ_RS13755 6015df2b89f05ea95c5da7d523eec361 296 SUPERFAMILY SSF103481 42 132 3.14E-10 T 14-09-2016 PAJ_RS20540 0889b7494667c5e36464ff359c38cb71 334 Pfam PF01636 Phosphotransferase enzyme family 40 271 1.9E-29 T 14-09-2016 IPR002575 Aminoglycoside phosphotransferase PAJ_RS20540 0889b7494667c5e36464ff359c38cb71 334 Gene3D G3DSA:3.90.1200.10 121 314 8.1E-25 T 14-09-2016 PAJ_RS20540 0889b7494667c5e36464ff359c38cb71 334 PANTHER PTHR21064 31 293 8.4E-28 T 14-09-2016 PAJ_RS20540 0889b7494667c5e36464ff359c38cb71 334 Gene3D G3DSA:3.30.200.20 34 100 1.3E-6 T 14-09-2016 PAJ_RS20540 0889b7494667c5e36464ff359c38cb71 334 SUPERFAMILY SSF56112 17 320 9.75E-56 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS15710 0664f11012b45546c4a3736f252b5e47 136 PANTHER PTHR30266:SF2 1 133 2.6E-58 T 14-09-2016 PAJ_RS15710 0664f11012b45546c4a3736f252b5e47 136 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 14-09-2016 IPR019823 Large-conductance mechanosensitive channel, conserved site PAJ_RS15710 0664f11012b45546c4a3736f252b5e47 136 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 132 2.5E-52 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PAJ_RS15710 0664f11012b45546c4a3736f252b5e47 136 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 130 2.4E-46 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PAJ_RS15710 0664f11012b45546c4a3736f252b5e47 136 PANTHER PTHR30266 1 133 2.6E-58 T 14-09-2016 PAJ_RS15710 0664f11012b45546c4a3736f252b5e47 136 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 133 29.593 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PAJ_RS15710 0664f11012b45546c4a3736f252b5e47 136 SUPERFAMILY SSF81330 12 126 1.57E-36 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PAJ_RS15710 0664f11012b45546c4a3736f252b5e47 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 3.4E-14 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PAJ_RS15710 0664f11012b45546c4a3736f252b5e47 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 3.4E-14 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PAJ_RS15710 0664f11012b45546c4a3736f252b5e47 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 3.4E-14 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 Gene3D G3DSA:2.20.25.90 2 51 7.2E-19 T 14-09-2016 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 PANTHER PTHR11615 1 709 1.1E-213 T 14-09-2016 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 Gene3D G3DSA:2.40.40.20 568 690 1.9E-36 T 14-09-2016 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 2 50 1.1E-16 T 14-09-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 Gene3D G3DSA:3.40.50.740 55 126 4.5E-86 T 14-09-2016 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 Gene3D G3DSA:3.40.50.740 312 558 4.5E-86 T 14-09-2016 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 SUPERFAMILY SSF53706 2 576 9.16E-179 T 14-09-2016 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 Pfam PF04324 BFD-like [2Fe-2S] binding domain 817 864 2.2E-11 T 14-09-2016 IPR007419 BFD-like [2Fe-2S]-binding domain PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 3 20 - T 14-09-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 PANTHER PTHR11615:SF119 1 709 1.1E-213 T 14-09-2016 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 SUPERFAMILY SSF50692 548 689 1.39E-38 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 SMART SM00926 1 52 2.5E-14 T 14-09-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 Pfam PF01568 Molydopterin dinucleotide binding domain 575 685 2.3E-23 T 14-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 Gene3D G3DSA:3.40.228.10 127 311 9.4E-53 T 14-09-2016 PAJ_RS05605 03b5a613c6f6b6aeaf6a93a567966912 873 Pfam PF00384 Molybdopterin oxidoreductase 69 475 1.1E-74 T 14-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PAJ_RS19495 eaa42288af442062476d2d00706c620b 446 Pfam PF04966 Carbohydrate-selective porin, OprB family 81 446 1.5E-83 T 14-09-2016 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 PAJ_RS19495 eaa42288af442062476d2d00706c620b 446 PANTHER PTHR37944 1 446 1.9E-107 T 14-09-2016 PAJ_RS19495 eaa42288af442062476d2d00706c620b 446 PANTHER PTHR37944:SF1 1 446 1.9E-107 T 14-09-2016 PAJ_RS11820 b9e5cfbb1b531836d209bb0cb429d866 457 PANTHER PTHR30008 2 455 1.3E-193 T 14-09-2016 PAJ_RS11820 b9e5cfbb1b531836d209bb0cb429d866 457 PANTHER PTHR30008:SF0 2 455 1.3E-193 T 14-09-2016 PAJ_RS11820 b9e5cfbb1b531836d209bb0cb429d866 457 Pfam PF02601 Exonuclease VII, large subunit 126 440 1.7E-103 T 14-09-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 PAJ_RS11820 b9e5cfbb1b531836d209bb0cb429d866 457 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 30.506 T 14-09-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 PAJ_RS11820 b9e5cfbb1b531836d209bb0cb429d866 457 Pfam PF13742 OB-fold nucleic acid binding domain 10 102 6.2E-31 T 14-09-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 PAJ_RS11820 b9e5cfbb1b531836d209bb0cb429d866 457 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 357 7.6E-137 T 14-09-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 PAJ_RS07335 ed70ecaac7c469349756feb6e10b0b5f 317 PANTHER PTHR31964:SF41 244 317 1.5E-70 T 14-09-2016 PAJ_RS07335 ed70ecaac7c469349756feb6e10b0b5f 317 PANTHER PTHR31964:SF41 1 88 1.5E-70 T 14-09-2016 PAJ_RS07335 ed70ecaac7c469349756feb6e10b0b5f 317 Gene3D G3DSA:3.40.50.620 143 303 1.8E-28 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS07335 ed70ecaac7c469349756feb6e10b0b5f 317 Pfam PF00582 Universal stress protein family 4 146 1.3E-18 T 14-09-2016 IPR006016 UspA GO:0006950 PAJ_RS07335 ed70ecaac7c469349756feb6e10b0b5f 317 Pfam PF00582 Universal stress protein family 174 300 6.8E-11 T 14-09-2016 IPR006016 UspA GO:0006950 PAJ_RS07335 ed70ecaac7c469349756feb6e10b0b5f 317 Gene3D G3DSA:3.40.50.620 1 142 2.8E-24 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS07335 ed70ecaac7c469349756feb6e10b0b5f 317 SUPERFAMILY SSF52402 155 307 2.6E-22 T 14-09-2016 PAJ_RS07335 ed70ecaac7c469349756feb6e10b0b5f 317 PANTHER PTHR31964 244 317 1.5E-70 T 14-09-2016 PAJ_RS07335 ed70ecaac7c469349756feb6e10b0b5f 317 PANTHER PTHR31964 1 88 1.5E-70 T 14-09-2016 PAJ_RS07335 ed70ecaac7c469349756feb6e10b0b5f 317 SUPERFAMILY SSF52402 4 153 3.1E-28 T 14-09-2016 PAJ_RS17290 527e433349d66445e6c1224986f9ef24 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 14-09-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17290 527e433349d66445e6c1224986f9ef24 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 3.9E-28 T 14-09-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17290 527e433349d66445e6c1224986f9ef24 55 Pfam PF00471 Ribosomal protein L33 7 53 8.7E-19 T 14-09-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17290 527e433349d66445e6c1224986f9ef24 55 PANTHER PTHR15238 1 55 1.5E-25 T 14-09-2016 PAJ_RS17290 527e433349d66445e6c1224986f9ef24 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.857 T 14-09-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS17290 527e433349d66445e6c1224986f9ef24 55 SUPERFAMILY SSF57829 1 53 4.27E-20 T 14-09-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 PAJ_RS02420 ba99a3bf2f58d677f1a988380a7d7bbc 217 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 75 128 4.0E-17 T 14-09-2016 PAJ_RS02420 ba99a3bf2f58d677f1a988380a7d7bbc 217 Pfam PF03099 Biotin/lipoate A/B protein ligase family 62 159 2.0E-5 T 14-09-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 PAJ_RS02420 ba99a3bf2f58d677f1a988380a7d7bbc 217 PANTHER PTHR10993 6 210 1.1E-78 T 14-09-2016 PAJ_RS02420 ba99a3bf2f58d677f1a988380a7d7bbc 217 SUPERFAMILY SSF55681 5 206 9.94E-68 T 14-09-2016 PAJ_RS02420 ba99a3bf2f58d677f1a988380a7d7bbc 217 Gene3D G3DSA:3.90.1550.10 5 203 1.0E-68 T 14-09-2016 PAJ_RS02420 ba99a3bf2f58d677f1a988380a7d7bbc 217 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 27 203 7.6E-73 T 14-09-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PAJ_RS02420 ba99a3bf2f58d677f1a988380a7d7bbc 217 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 71 86 - T 14-09-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PAJ_RS02420 ba99a3bf2f58d677f1a988380a7d7bbc 217 Hamap MF_00013 Octanoyltransferase [lipB]. 5 206 36.933 T 14-09-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PAJ_RS02420 ba99a3bf2f58d677f1a988380a7d7bbc 217 PIRSF PIRSF016262 2 216 6.3E-54 T 14-09-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PAJ_RS19265 dc2713991822091d79f91fb4961d04b7 478 Gene3D G3DSA:1.10.287.950 246 447 1.3E-45 T 14-09-2016 PAJ_RS19265 dc2713991822091d79f91fb4961d04b7 478 PANTHER PTHR32089 211 478 4.2E-61 T 14-09-2016 PAJ_RS19265 dc2713991822091d79f91fb4961d04b7 478 PANTHER PTHR32089:SF63 135 142 4.2E-61 T 14-09-2016 PAJ_RS19265 dc2713991822091d79f91fb4961d04b7 478 SUPERFAMILY SSF58104 218 477 2.88E-52 T 14-09-2016 PAJ_RS19265 dc2713991822091d79f91fb4961d04b7 478 PANTHER PTHR32089 135 142 4.2E-61 T 14-09-2016 PAJ_RS19265 dc2713991822091d79f91fb4961d04b7 478 PANTHER PTHR32089:SF63 211 478 4.2E-61 T 14-09-2016 PAJ_RS19265 dc2713991822091d79f91fb4961d04b7 478 SMART SM00283 229 476 5.0E-50 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS19265 dc2713991822091d79f91fb4961d04b7 478 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 288 475 8.2E-41 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS09990 4c9adfa7a4554975aada3ebd1d0f87ad 204 Gene3D G3DSA:1.20.144.10 73 144 3.1E-5 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS09990 4c9adfa7a4554975aada3ebd1d0f87ad 204 SMART SM00014 16 143 1.5E-5 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS09990 4c9adfa7a4554975aada3ebd1d0f87ad 204 Pfam PF01569 PAP2 superfamily 68 142 3.9E-8 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS09990 4c9adfa7a4554975aada3ebd1d0f87ad 204 SUPERFAMILY SSF48317 2 143 7.19E-14 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 Gene3D G3DSA:1.10.287.950 280 485 6.4E-54 T 14-09-2016 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 182 4.7E-14 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 PANTHER PTHR32089 144 514 4.8E-110 T 14-09-2016 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 512 2.1E-57 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 SMART SM00283 266 513 1.9E-75 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 2.7E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 2.7E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 2.7E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 26 2.7E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 2.7E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 PANTHER PTHR32089:SF48 144 514 4.8E-110 T 14-09-2016 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 SUPERFAMILY SSF58104 242 514 1.28E-64 T 14-09-2016 PAJ_RS14830 2b7eb52c60473b63ce0e86b1ad0f5cf2 514 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 291 313 - T 14-09-2016 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 Pfam PF12631 MnmE helical domain 123 451 2.2E-60 T 14-09-2016 IPR025867 MnmE, helical domain PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 Gene3D G3DSA:3.40.50.300 208 247 3.9E-8 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 Gene3D G3DSA:1.20.120.430 384 454 1.5E-58 T 14-09-2016 IPR027368 tRNA modification GTPase MnmE domain 2 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 Gene3D G3DSA:1.20.120.430 122 182 1.5E-58 T 14-09-2016 IPR027368 tRNA modification GTPase MnmE domain 2 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 Gene3D G3DSA:1.20.120.430 248 271 1.5E-58 T 14-09-2016 IPR027368 tRNA modification GTPase MnmE domain 2 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 Gene3D G3DSA:3.30.1360.120 1 121 6.4E-43 T 14-09-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 PANTHER PTHR11649:SF56 8 454 7.1E-176 T 14-09-2016 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 1.4E-35 T 14-09-2016 IPR018948 GTP-binding protein TrmE, N-terminal PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 PANTHER PTHR11649 8 454 7.1E-176 T 14-09-2016 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 454 33.234 T 14-09-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 Pfam PF01926 50S ribosome-binding GTPase 218 307 2.6E-24 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 SUPERFAMILY SSF52540 204 372 4.78E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 SUPERFAMILY SSF52540 71 170 4.78E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 Gene3D G3DSA:3.40.50.300 286 376 5.0E-8 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 SUPERFAMILY SSF116878 379 454 6.8E-51 T 14-09-2016 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 SUPERFAMILY SSF116878 121 220 6.8E-51 T 14-09-2016 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 454 8.1E-102 T 14-09-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 PAJ_RS17985 c89dac6bd176364a8507d57da92ac021 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 372 6.3E-24 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 23 39 - T 14-09-2016 IPR013061 Tryptophan/tryrosine permease, conserved site PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PANTHER PTHR32195:SF18 3 411 8.7E-181 T 14-09-2016 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 Pfam PF03222 Tryptophan/tyrosine permease family 8 403 2.2E-144 T 14-09-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PANTHER PTHR32195 3 411 8.7E-181 T 14-09-2016 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PRINTS PR00166 Aromatic amino acid permease signature 43 62 2.3E-101 T 14-09-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PRINTS PR00166 Aromatic amino acid permease signature 154 174 2.3E-101 T 14-09-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PRINTS PR00166 Aromatic amino acid permease signature 294 313 2.3E-101 T 14-09-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PRINTS PR00166 Aromatic amino acid permease signature 349 368 2.3E-101 T 14-09-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PRINTS PR00166 Aromatic amino acid permease signature 16 39 2.3E-101 T 14-09-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PRINTS PR00166 Aromatic amino acid permease signature 328 346 2.3E-101 T 14-09-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PRINTS PR00166 Aromatic amino acid permease signature 194 216 2.3E-101 T 14-09-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PRINTS PR00166 Aromatic amino acid permease signature 88 108 2.3E-101 T 14-09-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 PRINTS PR00166 Aromatic amino acid permease signature 233 252 2.3E-101 T 14-09-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 PAJ_RS18100 bf84aa9725654591acf7f5af5c49972b 415 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 13 396 7.2E-151 T 14-09-2016 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 249 2.1E-51 T 14-09-2016 PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PANTHER PTHR24322 157 188 5.5E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PANTHER PTHR24322 8 141 5.5E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.4E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 2.4E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 2.4E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 193 0.002 T 14-09-2016 PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 SUPERFAMILY SSF51735 3 250 8.86E-69 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 Gene3D G3DSA:3.40.50.720 2 250 4.0E-72 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 5.7E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 5.7E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 5.7E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 5.7E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 5.7E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS16805 aadb1a15f4f7736dbf99639d7277ccbc 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 5.7E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS02845 85a85647a4d3908286eb11e9dae45055 168 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 77 156 1.7E-35 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PAJ_RS02845 85a85647a4d3908286eb11e9dae45055 168 Gene3D G3DSA:1.10.10.10 76 157 1.4E-33 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02845 85a85647a4d3908286eb11e9dae45055 168 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 2 159 36.176 T 14-09-2016 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 PAJ_RS02845 85a85647a4d3908286eb11e9dae45055 168 SUPERFAMILY SSF46767 76 156 1.83E-31 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PAJ_RS02845 85a85647a4d3908286eb11e9dae45055 168 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 78 156 5.1E-30 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PAJ_RS02845 85a85647a4d3908286eb11e9dae45055 168 SUPERFAMILY SSF53155 4 81 1.59E-17 T 14-09-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 PAJ_RS02845 85a85647a4d3908286eb11e9dae45055 168 PANTHER PTHR10815 7 156 4.5E-54 T 14-09-2016 PAJ_RS02845 85a85647a4d3908286eb11e9dae45055 168 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 1 74 1.1E-11 T 14-09-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 PAJ_RS02845 85a85647a4d3908286eb11e9dae45055 168 PANTHER PTHR10815:SF5 7 156 4.5E-54 T 14-09-2016 PAJ_RS07780 9f3039e01a758ad7ff25336258769217 333 SMART SM00382 48 241 5.9E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS07780 9f3039e01a758ad7ff25336258769217 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 1.7E-28 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS07780 9f3039e01a758ad7ff25336258769217 333 Pfam PF00005 ABC transporter 40 191 2.9E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS07780 9f3039e01a758ad7ff25336258769217 333 PANTHER PTHR24220:SF544 12 328 1.5E-196 T 14-09-2016 PAJ_RS07780 9f3039e01a758ad7ff25336258769217 333 Gene3D G3DSA:3.40.50.300 7 267 1.8E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07780 9f3039e01a758ad7ff25336258769217 333 PANTHER PTHR24220 12 328 1.5E-196 T 14-09-2016 PAJ_RS07780 9f3039e01a758ad7ff25336258769217 333 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS07780 9f3039e01a758ad7ff25336258769217 333 SUPERFAMILY SSF52540 22 263 9.32E-74 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07780 9f3039e01a758ad7ff25336258769217 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 310 1.3E-18 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 Hamap MF_01587 DNA ligase B [ligB]. 4 568 52.347 T 14-09-2016 IPR020923 DNA ligase B GO:0003911|GO:0006259 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 Gene3D G3DSA:3.30.470.30 130 246 1.2E-17 T 14-09-2016 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 Gene3D G3DSA:2.40.50.140 313 382 2.3E-18 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 Gene3D G3DSA:1.10.150.20 415 478 0.001 T 14-09-2016 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 SUPERFAMILY SSF56091 26 307 1.14E-63 T 14-09-2016 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 SUPERFAMILY SSF47781 401 558 2.45E-23 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 315 387 3.6E-18 T 14-09-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 117 309 5.9E-20 T 14-09-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 31 74 1.3E-4 T 14-09-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 SUPERFAMILY SSF50249 311 391 5.48E-17 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 PANTHER PTHR23389:SF7 23 497 1.3E-174 T 14-09-2016 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 Gene3D G3DSA:1.10.287.610 31 71 5.7E-8 T 14-09-2016 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 SMART SM00532 30 428 1.4E-53 T 14-09-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 PAJ_RS17385 fff34dce487f10bae18d0c96f4c2f008 589 PANTHER PTHR23389 23 497 1.3E-174 T 14-09-2016 PAJ_RS18940 6f05bb1cf017494efe77217c955a8867 331 SUPERFAMILY SSF51395 9 317 1.3E-72 T 14-09-2016 PAJ_RS18940 6f05bb1cf017494efe77217c955a8867 331 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 9 324 1.7E-159 T 14-09-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 PAJ_RS18940 6f05bb1cf017494efe77217c955a8867 331 Gene3D G3DSA:3.20.20.70 8 251 5.1E-73 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS18940 6f05bb1cf017494efe77217c955a8867 331 PANTHER PTHR11082 5 330 4.5E-160 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS18940 6f05bb1cf017494efe77217c955a8867 331 PANTHER PTHR11082:SF29 5 330 4.5E-160 T 14-09-2016 PAJ_RS18940 6f05bb1cf017494efe77217c955a8867 331 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 4 325 52.835 T 14-09-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 PAJ_RS18940 6f05bb1cf017494efe77217c955a8867 331 Pfam PF01207 Dihydrouridine synthase (Dus) 12 318 1.7E-92 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS18940 6f05bb1cf017494efe77217c955a8867 331 PIRSF PIRSF006621 2 326 1.3E-69 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS18940 6f05bb1cf017494efe77217c955a8867 331 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 90 108 - T 14-09-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 Gene3D G3DSA:3.30.70.270 235 398 1.1E-20 T 14-09-2016 PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 Pfam PF00990 Diguanylate cyclase, GGDEF domain 235 385 5.6E-16 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 SUPERFAMILY SSF141868 405 650 1.23E-73 T 14-09-2016 IPR001633 EAL domain PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 SMART SM00267 220 390 1.5E-19 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 Gene3D G3DSA:3.20.20.450 405 648 2.0E-78 T 14-09-2016 IPR001633 EAL domain PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 PANTHER PTHR33121:SF13 353 648 2.5E-55 T 14-09-2016 PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 Pfam PF00563 EAL domain 407 639 9.0E-62 T 14-09-2016 IPR001633 EAL domain PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 PANTHER PTHR33121:SF13 139 192 2.5E-55 T 14-09-2016 PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 Pfam PF17154 Gammaproteobacterial periplasmic sensor domain 25 144 5.5E-54 T 14-09-2016 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 SUPERFAMILY SSF55073 237 391 1.26E-19 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 Pfam PF00672 HAMP domain 150 220 3.7E-12 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 PANTHER PTHR33121 139 192 2.5E-55 T 14-09-2016 PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 PANTHER PTHR33121 353 648 2.5E-55 T 14-09-2016 PAJ_RS18205 0f6d367a810876d05462a4a2072edf4a 658 SMART SM00052 400 645 3.1E-90 T 14-09-2016 IPR001633 EAL domain PAJ_RS10655 2596ecb5ef01212a961ddbd9a2635764 164 Pfam PF03887 YfbU domain 1 164 8.4E-67 T 14-09-2016 IPR005587 Uncharacterised protein family UPF0304, YfbU PAJ_RS10655 2596ecb5ef01212a961ddbd9a2635764 164 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 164 5.0E-79 T 14-09-2016 IPR005587 Uncharacterised protein family UPF0304, YfbU PAJ_RS10655 2596ecb5ef01212a961ddbd9a2635764 164 Gene3D G3DSA:1.10.287.680 1 52 1.3E-28 T 14-09-2016 IPR023145 YfbU, helix-hairpin domain PAJ_RS10655 2596ecb5ef01212a961ddbd9a2635764 164 SUPERFAMILY SSF116960 1 164 3.66E-67 T 14-09-2016 PAJ_RS10655 2596ecb5ef01212a961ddbd9a2635764 164 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 164 37.525 T 14-09-2016 IPR005587 Uncharacterised protein family UPF0304, YfbU PAJ_RS10655 2596ecb5ef01212a961ddbd9a2635764 164 Gene3D G3DSA:1.10.3190.10 53 164 2.7E-47 T 14-09-2016 IPR023146 YfbU, alpha-helical bundle domain PAJ_RS10655 2596ecb5ef01212a961ddbd9a2635764 164 PIRSF PIRSF006272 1 164 3.5E-74 T 14-09-2016 IPR005587 Uncharacterised protein family UPF0304, YfbU PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 Pfam PF07690 Major Facilitator Superfamily 16 405 1.4E-41 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 PANTHER PTHR23501 1 466 7.7E-287 T 14-09-2016 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 SUPERFAMILY SSF103473 244 449 1.7E-57 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 SUPERFAMILY SSF103473 13 194 1.7E-57 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 Gene3D G3DSA:1.20.1250.20 13 187 9.3E-25 T 14-09-2016 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 Gene3D G3DSA:1.20.1250.20 258 450 3.5E-15 T 14-09-2016 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 PANTHER PTHR23501:SF1 1 466 7.7E-287 T 14-09-2016 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 1.5E-8 T 14-09-2016 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 1.5E-8 T 14-09-2016 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 331 351 1.5E-8 T 14-09-2016 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 1.5E-8 T 14-09-2016 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 199 217 1.5E-8 T 14-09-2016 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 1.5E-8 T 14-09-2016 PAJ_RS17530 fdc30aee599e5d72fa681a3e02f534e2 466 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 426 6.0E-75 T 14-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 PAJ_RS09485 d694803c6ad8cdda8d69119592ac0da0 443 Pfam PF01266 FAD dependent oxidoreductase 19 413 2.1E-58 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PAJ_RS09485 d694803c6ad8cdda8d69119592ac0da0 443 SUPERFAMILY SSF51905 18 231 6.48E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09485 d694803c6ad8cdda8d69119592ac0da0 443 SUPERFAMILY SSF51905 374 432 6.48E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09485 d694803c6ad8cdda8d69119592ac0da0 443 Gene3D G3DSA:3.50.50.60 152 230 5.7E-63 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09485 d694803c6ad8cdda8d69119592ac0da0 443 Gene3D G3DSA:3.50.50.60 374 433 5.7E-63 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09485 d694803c6ad8cdda8d69119592ac0da0 443 Gene3D G3DSA:3.50.50.60 9 94 5.7E-63 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09485 d694803c6ad8cdda8d69119592ac0da0 443 Gene3D G3DSA:3.30.9.10 231 373 2.9E-10 T 14-09-2016 PAJ_RS09485 d694803c6ad8cdda8d69119592ac0da0 443 Gene3D G3DSA:3.30.9.10 100 151 2.9E-10 T 14-09-2016 PAJ_RS09485 d694803c6ad8cdda8d69119592ac0da0 443 PANTHER PTHR13847 301 436 4.2E-58 T 14-09-2016 PAJ_RS09485 d694803c6ad8cdda8d69119592ac0da0 443 PANTHER PTHR13847 1 264 4.2E-58 T 14-09-2016 PAJ_RS16070 ba23a869eb98502e47042b13482517a6 362 Gene3D G3DSA:3.40.50.1970 2 171 1.7E-65 T 14-09-2016 PAJ_RS16070 ba23a869eb98502e47042b13482517a6 362 PANTHER PTHR21090 1 361 1.6E-206 T 14-09-2016 PAJ_RS16070 ba23a869eb98502e47042b13482517a6 362 Gene3D G3DSA:1.20.1090.10 173 356 3.7E-67 T 14-09-2016 PAJ_RS16070 ba23a869eb98502e47042b13482517a6 362 SUPERFAMILY SSF56796 4 357 2.62E-113 T 14-09-2016 PAJ_RS16070 ba23a869eb98502e47042b13482517a6 362 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 2 358 42.588 T 14-09-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS16070 ba23a869eb98502e47042b13482517a6 362 Pfam PF01761 3-dehydroquinate synthase 67 325 1.9E-108 T 14-09-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS16070 ba23a869eb98502e47042b13482517a6 362 PIRSF PIRSF001455 12 361 4.6E-107 T 14-09-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS16070 ba23a869eb98502e47042b13482517a6 362 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 14 355 2.2E-119 T 14-09-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS19860 78344502bc6f0e4fee775dfc351a5785 209 Gene3D G3DSA:3.40.50.150 1 208 6.2E-75 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS19860 78344502bc6f0e4fee775dfc351a5785 209 PANTHER PTHR10920:SF20 1 208 3.5E-142 T 14-09-2016 PAJ_RS19860 78344502bc6f0e4fee775dfc351a5785 209 TIGRFAM TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J 20 206 8.1E-95 T 14-09-2016 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria GO:0006364|GO:0016436 KEGG: 00564+2.1.1.16 PAJ_RS19860 78344502bc6f0e4fee775dfc351a5785 209 SUPERFAMILY SSF53335 31 207 1.72E-43 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS19860 78344502bc6f0e4fee775dfc351a5785 209 Pfam PF01728 FtsJ-like methyltransferase 31 206 7.7E-60 T 14-09-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 PAJ_RS19860 78344502bc6f0e4fee775dfc351a5785 209 PANTHER PTHR10920 1 208 3.5E-142 T 14-09-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 PAJ_RS19860 78344502bc6f0e4fee775dfc351a5785 209 PIRSF PIRSF005461 1 209 1.1E-83 T 14-09-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 PAJ_RS19860 78344502bc6f0e4fee775dfc351a5785 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 11 207 27.719 T 14-09-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 PAJ_RS14355 bb9583802b2d4acd5942132ba320aed3 440 Gene3D G3DSA:1.20.1250.20 16 221 6.3E-25 T 14-09-2016 PAJ_RS14355 bb9583802b2d4acd5942132ba320aed3 440 Gene3D G3DSA:1.20.1250.20 241 428 3.0E-20 T 14-09-2016 PAJ_RS14355 bb9583802b2d4acd5942132ba320aed3 440 PANTHER PTHR23508 13 420 1.6E-240 T 14-09-2016 PAJ_RS14355 bb9583802b2d4acd5942132ba320aed3 440 ProSitePatterns PS00216 Sugar transport proteins signature 1. 295 312 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS14355 bb9583802b2d4acd5942132ba320aed3 440 Pfam PF00083 Sugar (and other) transporter 21 417 4.1E-30 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS14355 bb9583802b2d4acd5942132ba320aed3 440 PANTHER PTHR23508:SF14 13 420 1.6E-240 T 14-09-2016 PAJ_RS14355 bb9583802b2d4acd5942132ba320aed3 440 SUPERFAMILY SSF103473 16 426 9.81E-65 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS14355 bb9583802b2d4acd5942132ba320aed3 440 ProSitePatterns PS00217 Sugar transport proteins signature 2. 127 152 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS13580 475e13d1f3e9b216e58e74ba4a091dfb 97 Pfam PF10262 Rdx family 6 78 2.7E-32 T 14-09-2016 IPR011893 Selenoprotein, Rdx type PAJ_RS13580 475e13d1f3e9b216e58e74ba4a091dfb 97 PANTHER PTHR36417:SF2 1 97 4.0E-40 T 14-09-2016 PAJ_RS13580 475e13d1f3e9b216e58e74ba4a091dfb 97 PANTHER PTHR36417 1 97 4.0E-40 T 14-09-2016 PAJ_RS13580 475e13d1f3e9b216e58e74ba4a091dfb 97 SUPERFAMILY SSF52833 3 87 3.13E-28 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS13580 475e13d1f3e9b216e58e74ba4a091dfb 97 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 6 77 1.4E-22 T 14-09-2016 IPR011893 Selenoprotein, Rdx type PAJ_RS13580 475e13d1f3e9b216e58e74ba4a091dfb 97 Gene3D G3DSA:3.40.30.10 2 95 8.2E-44 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 PANTHER PTHR20854:SF4 4 236 1.0E-56 T 14-09-2016 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 69 85 3.1E-33 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 105 3.1E-33 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 214 238 3.1E-33 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 138 161 3.1E-33 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 183 204 3.1E-33 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 PRINTS PR00377 Inositol monophosphatase superfamily signature 47 67 3.1E-33 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 Pfam PF00459 Inositol monophosphatase family 13 258 1.6E-52 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 PANTHER PTHR20854 4 236 1.0E-56 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 Gene3D G3DSA:3.40.190.80 159 265 2.2E-18 T 14-09-2016 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 89 102 - T 14-09-2016 IPR020583 Inositol monophosphatase, metal-binding site PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 SUPERFAMILY SSF56655 11 263 4.97E-67 T 14-09-2016 PAJ_RS01540 6d106c0e08e1705ec2aede4b54153f1d 270 Gene3D G3DSA:3.30.540.10 12 158 1.9E-46 T 14-09-2016 PAJ_RS04305 3c35583da62e088aba3ecfe52a212904 386 Gene3D G3DSA:3.20.20.80 50 332 3.4E-19 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS04305 3c35583da62e088aba3ecfe52a212904 386 SUPERFAMILY SSF51445 39 347 6.61E-38 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS06435 4613b944373acb0d649d277b7c778a83 346 SUPERFAMILY SSF51735 2 191 5.29E-53 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06435 4613b944373acb0d649d277b7c778a83 346 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 240 3.0E-14 T 14-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 PAJ_RS06435 4613b944373acb0d649d277b7c778a83 346 Gene3D G3DSA:3.40.50.720 1 130 1.4E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06435 4613b944373acb0d649d277b7c778a83 346 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 2.6E-24 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 PAJ_RS06435 4613b944373acb0d649d277b7c778a83 346 Gene3D G3DSA:3.30.360.10 131 340 9.7E-39 T 14-09-2016 PAJ_RS06435 4613b944373acb0d649d277b7c778a83 346 PANTHER PTHR22604 1 346 1.5E-138 T 14-09-2016 PAJ_RS06435 4613b944373acb0d649d277b7c778a83 346 PANTHER PTHR22604:SF53 1 346 1.5E-138 T 14-09-2016 PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 PANTHER PTHR30363:SF1 8 267 5.6E-61 T 14-09-2016 PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 Gene3D G3DSA:1.10.10.10 10 64 7.9E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 Pfam PF08220 DeoR-like helix-turn-helix domain 14 68 4.4E-15 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 SUPERFAMILY SSF100950 82 243 9.42E-24 T 14-09-2016 PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 SUPERFAMILY SSF46785 11 75 2.23E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 104 115 - T 14-09-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 PANTHER PTHR30363 8 267 5.6E-61 T 14-09-2016 PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 Gene3D G3DSA:3.40.50.1360 83 229 7.3E-11 T 14-09-2016 PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 SMART SM01134 81 243 2.0E-54 T 14-09-2016 PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 Pfam PF00455 DeoR C terminal sensor domain 83 242 5.5E-42 T 14-09-2016 IPR014036 DeoR C-terminal sensor domain PAJ_RS05615 d256b7e5bfa22b6587b8801a94200a91 270 SMART SM00420 14 66 2.2E-15 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 Gene3D G3DSA:1.10.10.10 1 87 5.2E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 PANTHER PTHR30419 1 291 5.1E-124 T 14-09-2016 PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.5E-21 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 Pfam PF03466 LysR substrate binding domain 87 291 4.6E-43 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 PANTHER PTHR30419:SF8 1 291 5.1E-124 T 14-09-2016 PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 SUPERFAMILY SSF46785 1 86 3.22E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 SUPERFAMILY SSF53850 90 294 1.19E-39 T 14-09-2016 PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 Gene3D G3DSA:3.40.190.10 90 175 2.1E-15 T 14-09-2016 PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS19065 171411084c7a3e7bed03df0fb9e03e5a 300 Gene3D G3DSA:3.40.190.10 176 260 1.5E-24 T 14-09-2016 PAJ_RS11925 def038d2e95a143f1d825a67e237abcc 248 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 240 2.4E-87 T 14-09-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PAJ_RS11925 def038d2e95a143f1d825a67e237abcc 248 SUPERFAMILY SSF75217 4 167 2.42E-39 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases PAJ_RS11925 def038d2e95a143f1d825a67e237abcc 248 PANTHER PTHR12029 3 180 3.7E-44 T 14-09-2016 PAJ_RS11925 def038d2e95a143f1d825a67e237abcc 248 Gene3D G3DSA:3.40.1280.10 4 170 8.5E-34 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PAJ_RS11925 def038d2e95a143f1d825a67e237abcc 248 Pfam PF00588 SpoU rRNA Methylase family 5 154 4.7E-34 T 14-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 PAJ_RS11925 def038d2e95a143f1d825a67e237abcc 248 PIRSF PIRSF004808 1 245 1.5E-76 T 14-09-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PAJ_RS00590 3b4443f53e450b5cf46c7e65d2c9ce7e 175 PANTHER PTHR35561:SF1 4 175 4.6E-49 T 14-09-2016 PAJ_RS00590 3b4443f53e450b5cf46c7e65d2c9ce7e 175 PANTHER PTHR35561 4 175 4.6E-49 T 14-09-2016 PAJ_RS00590 3b4443f53e450b5cf46c7e65d2c9ce7e 175 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 5 173 3.4E-38 T 14-09-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 PAJ_RS00590 3b4443f53e450b5cf46c7e65d2c9ce7e 175 Gene3D G3DSA:3.90.1140.10 4 173 9.5E-48 T 14-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase PAJ_RS00590 3b4443f53e450b5cf46c7e65d2c9ce7e 175 Pfam PF02834 LigT like Phosphoesterase 10 88 2.0E-12 T 14-09-2016 IPR014051 Phosphoesterase, HXTX PAJ_RS00590 3b4443f53e450b5cf46c7e65d2c9ce7e 175 Pfam PF02834 LigT like Phosphoesterase 94 165 9.3E-6 T 14-09-2016 IPR014051 Phosphoesterase, HXTX PAJ_RS00590 3b4443f53e450b5cf46c7e65d2c9ce7e 175 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 4 173 21.732 T 14-09-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 PAJ_RS00590 3b4443f53e450b5cf46c7e65d2c9ce7e 175 SUPERFAMILY SSF55144 5 173 9.68E-43 T 14-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase PAJ_RS15100 f84fcd1cd395806491d626514b6acf50 234 PANTHER PTHR13903 1 234 1.8E-132 T 14-09-2016 IPR012093 Pirin PAJ_RS15100 f84fcd1cd395806491d626514b6acf50 234 SUPERFAMILY SSF51182 1 232 4.45E-47 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS15100 f84fcd1cd395806491d626514b6acf50 234 Pfam PF02678 Pirin 7 119 3.5E-23 T 14-09-2016 IPR003829 Pirin, N-terminal domain PAJ_RS15100 f84fcd1cd395806491d626514b6acf50 234 PANTHER PTHR13903:SF14 1 234 1.8E-132 T 14-09-2016 PAJ_RS15100 f84fcd1cd395806491d626514b6acf50 234 Gene3D G3DSA:2.60.120.10 3 232 7.6E-34 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS15100 f84fcd1cd395806491d626514b6acf50 234 PIRSF PIRSF006232 1 231 4.2E-33 T 14-09-2016 IPR012093 Pirin PAJ_RS15960 4e62814f89ec57e3bea9a4ec0d6fbbcf 276 PANTHER PTHR30151:SF0 12 276 1.3E-113 T 14-09-2016 PAJ_RS15960 4e62814f89ec57e3bea9a4ec0d6fbbcf 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 270 6.5E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS15960 4e62814f89ec57e3bea9a4ec0d6fbbcf 276 PANTHER PTHR30151 12 276 1.3E-113 T 14-09-2016 PAJ_RS15960 4e62814f89ec57e3bea9a4ec0d6fbbcf 276 Gene3D G3DSA:1.10.3720.10 72 271 1.6E-28 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS15960 4e62814f89ec57e3bea9a4ec0d6fbbcf 276 SUPERFAMILY SSF161098 76 259 1.96E-34 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16775 57e0723527dd67179920871458e2fd35 80 Pfam PF06643 Protein of unknown function (DUF1158) 1 78 2.1E-41 T 14-09-2016 IPR010590 Protein of unknown function DUF1158 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 Gene3D G3DSA:3.30.499.10 2 157 4.7E-24 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PRINTS PR00415 Aconitase family signature 285 299 1.9E-50 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PRINTS PR00415 Aconitase family signature 107 115 1.9E-50 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PRINTS PR00415 Aconitase family signature 81 94 1.9E-50 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PRINTS PR00415 Aconitase family signature 118 131 1.9E-50 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PRINTS PR00415 Aconitase family signature 342 353 1.9E-50 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PRINTS PR00415 Aconitase family signature 398 411 1.9E-50 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PRINTS PR00415 Aconitase family signature 132 147 1.9E-50 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PRINTS PR00415 Aconitase family signature 208 221 1.9E-50 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PRINTS PR00415 Aconitase family signature 194 207 1.9E-50 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 Pfam PF00330 Aconitase family (aconitate hydratase) 7 456 2.9E-158 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 ProSitePatterns PS01244 Aconitase family signature 2. 398 411 - T 14-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 2 463 9.8E-270 T 14-09-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 SUPERFAMILY SSF53732 2 464 3.92E-169 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 465 61.377 T 14-09-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 ProSitePatterns PS00450 Aconitase family signature 1. 338 354 - T 14-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 Gene3D G3DSA:3.40.1060.10 165 278 3.0E-41 T 14-09-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PANTHER PTHR11670 326 465 1.0E-275 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PANTHER PTHR11670 2 306 1.0E-275 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 Gene3D G3DSA:3.30.499.10 330 464 5.1E-63 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PANTHER PTHR11670:SF38 326 465 1.0E-275 T 14-09-2016 PAJ_RS00250 bd16edf8d9c150d3f11c740ebc455c1f 465 PANTHER PTHR11670:SF38 2 306 1.0E-275 T 14-09-2016 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 Pfam PF01565 FAD binding domain 42 159 9.8E-7 T 14-09-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 PANTHER PTHR11748:SF82 7 186 3.8E-55 T 14-09-2016 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 PANTHER PTHR11748:SF82 237 322 3.8E-55 T 14-09-2016 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 Pfam PF09330 D-lactate dehydrogenase, membrane binding 273 562 9.4E-146 T 14-09-2016 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 Gene3D G3DSA:3.30.43.10 2 83 2.1E-6 T 14-09-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 SUPERFAMILY SSF56176 5 265 5.61E-69 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 Gene3D G3DSA:3.30.1370.20 430 513 5.7E-45 T 14-09-2016 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 Gene3D G3DSA:3.30.465.10 102 263 1.2E-82 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 PIRSF PIRSF000101 1 564 2.6E-286 T 14-09-2016 IPR012256 D-lactate dehydrogenase GO:0004457|GO:0005887|GO:0006089|GO:0050660|GO:0051287 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 SUPERFAMILY SSF55103 271 562 1.5E-114 T 14-09-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 Gene3D G3DSA:3.30.70.610 372 429 3.3E-40 T 14-09-2016 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 Gene3D G3DSA:3.30.70.610 264 305 3.3E-40 T 14-09-2016 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 PANTHER PTHR11748 7 186 3.8E-55 T 14-09-2016 PAJ_RS03100 74b346daf31cc1c70638753c92455cfd 567 PANTHER PTHR11748 237 322 3.8E-55 T 14-09-2016 PAJ_RS04195 9d92dbe6271a5f200ff1bb9dbc070e89 245 Pfam PF05100 Phage minor tail protein L 24 242 5.7E-69 T 14-09-2016 IPR006487 Bacteriophage lambda, GpL, minor tail PAJ_RS04195 9d92dbe6271a5f200ff1bb9dbc070e89 245 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 6 241 3.3E-59 T 14-09-2016 IPR006487 Bacteriophage lambda, GpL, minor tail PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 431 450 - T 14-09-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 SUPERFAMILY SSF52467 189 362 6.71E-63 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 SUPERFAMILY SSF52518 2 180 2.32E-64 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 SUPERFAMILY SSF52518 370 568 3.93E-67 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 168 3.6E-58 T 14-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 PANTHER PTHR18968 2 574 0.0 T 14-09-2016 PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 Gene3D G3DSA:3.40.50.1220 190 357 1.2E-68 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 PANTHER PTHR18968:SF116 2 574 0.0 T 14-09-2016 PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 569 7.5E-277 T 14-09-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 Gene3D G3DSA:3.40.50.970 358 558 1.4E-73 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 545 2.3E-48 T 14-09-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 9.3E-48 T 14-09-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PAJ_RS00265 1010154d8c4c5728b8e9b5a965e291a2 574 Gene3D G3DSA:3.40.50.970 2 175 1.8E-73 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 Gene3D G3DSA:1.10.8.60 343 428 9.2E-37 T 14-09-2016 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 Gene3D G3DSA:1.10.8.60 778 854 4.1E-31 T 14-09-2016 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 337 1.6E-13 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 3.2E-42 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 3.2E-42 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 3.2E-42 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 3.2E-42 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 14-09-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 14-09-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 SMART SM00382 597 735 3.3E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 SMART SM00382 198 343 5.3E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 PANTHER PTHR11638 1 851 0.0 T 14-09-2016 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 Gene3D G3DSA:3.40.50.300 552 777 2.6E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 3.4E-13 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.7E-12 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 SUPERFAMILY SSF52540 159 545 5.34E-99 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 845 2.9E-28 T 14-09-2016 IPR019489 Clp ATPase, C-terminal PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 14-09-2016 IPR028299 ClpA/B, conserved site 2 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 SMART SM01086 766 855 1.3E-37 T 14-09-2016 IPR019489 Clp ATPase, C-terminal PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 SUPERFAMILY SSF81923 4 156 1.83E-42 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 SUPERFAMILY SSF52540 546 850 1.56E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 Gene3D G3DSA:1.10.1780.10 1 147 2.5E-46 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 1.1E-55 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 Gene3D G3DSA:3.40.50.300 160 341 2.6E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12630 a9a379b7df7a71dffd83ed7030a02be6 857 PANTHER PTHR11638:SF18 1 851 0.0 T 14-09-2016 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 Pfam PF08544 GHMP kinases C terminal 220 281 4.4E-8 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 Pfam PF00288 GHMP kinases N terminal domain 85 150 1.8E-14 T 14-09-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 SUPERFAMILY SSF54211 1 178 2.2E-32 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 Gene3D G3DSA:3.30.230.10 1 162 1.5E-49 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 PANTHER PTHR20861 1 306 1.2E-128 T 14-09-2016 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 PRINTS PR00958 Homoserine kinase signature 254 269 5.7E-33 T 14-09-2016 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 PRINTS PR00958 Homoserine kinase signature 175 192 5.7E-33 T 14-09-2016 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 PRINTS PR00958 Homoserine kinase signature 137 150 5.7E-33 T 14-09-2016 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 PRINTS PR00958 Homoserine kinase signature 9 24 5.7E-33 T 14-09-2016 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 PRINTS PR00958 Homoserine kinase signature 97 112 5.7E-33 T 14-09-2016 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 PIRSF PIRSF000676 1 308 7.8E-84 T 14-09-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 SUPERFAMILY SSF55060 173 289 3.42E-32 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 TIGRFAM TIGR00191 thrB: homoserine kinase 2 306 1.7E-112 T 14-09-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 PANTHER PTHR20861:SF1 1 306 1.2E-128 T 14-09-2016 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 Gene3D G3DSA:3.30.70.890 169 298 5.6E-41 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 14-09-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 PAJ_RS00010 4d2496bb1a538f27ff8b450ae87888ab 309 Hamap MF_00384 Homoserine kinase [thrB]. 2 307 30.09 T 14-09-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 SUPERFAMILY SSF55785 87 195 8.38E-10 T 14-09-2016 IPR000014 PAS domain PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 Pfam PF11808 Domain of unknown function (DUF3329) 6 91 2.7E-29 T 14-09-2016 IPR021766 Protein of unknown function DUF3329 GO:0004673 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 1.3E-8 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 1.3E-8 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 1.3E-8 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 Gene3D G3DSA:1.10.287.130 195 254 9.5E-22 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 314 422 3.4E-23 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 SMART SM00091 98 165 5.1E-6 T 14-09-2016 IPR000014 PAS domain PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 SMART SM00388 203 269 7.1E-22 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 95 421 1.9E-133 T 14-09-2016 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 PANTHER PTHR24423:SF554 1 429 1.6E-180 T 14-09-2016 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 Gene3D G3DSA:3.30.450.20 99 194 1.6E-9 T 14-09-2016 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 SMART SM00387 313 425 3.5E-37 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 SUPERFAMILY SSF55874 259 421 1.57E-39 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 PANTHER PTHR24423 1 429 1.6E-180 T 14-09-2016 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 Pfam PF00512 His Kinase A (phospho-acceptor) domain 203 268 1.2E-18 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 98 211 1.1E-7 T 14-09-2016 IPR000014 PAS domain PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 SUPERFAMILY SSF47384 190 268 3.53E-19 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 Gene3D G3DSA:3.30.565.10 255 421 1.1E-41 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS01505 fd64cbaee8bfe241fe860f94b3f80953 437 Pfam PF00989 PAS fold 99 160 1.2E-7 T 14-09-2016 IPR013767 PAS fold GO:0006355 PAJ_RS09430 1f5e3da03f79922d3cc87bf6a37cdc12 194 PIRSF PIRSF020680 1 193 5.8E-58 T 14-09-2016 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 PAJ_RS09430 1f5e3da03f79922d3cc87bf6a37cdc12 194 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 6 189 1.6E-62 T 14-09-2016 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 PAJ_RS09430 1f5e3da03f79922d3cc87bf6a37cdc12 194 SUPERFAMILY SSF159709 13 190 6.02E-57 T 14-09-2016 PAJ_RS09430 1f5e3da03f79922d3cc87bf6a37cdc12 194 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 7 187 2.7E-55 T 14-09-2016 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 363 520 1.9E-47 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 SUPERFAMILY SSF103190 80 182 2.86E-9 T 14-09-2016 IPR029151 Periplasmic sensor domain-like PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 Gene3D G3DSA:3.30.70.270 368 521 8.2E-49 T 14-09-2016 PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 Pfam PF02743 Cache domain 43 268 1.2E-19 T 14-09-2016 IPR033479 Double Cache domain 1 PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 SUPERFAMILY SSF55073 371 519 2.82E-44 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 Gene3D G3DSA:3.30.450.20 84 162 6.4E-4 T 14-09-2016 PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 PANTHER PTHR10799 339 348 6.0E-27 T 14-09-2016 PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 PANTHER PTHR10799 395 515 6.0E-27 T 14-09-2016 PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 SMART SM00267 355 520 1.3E-57 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 Gene3D G3DSA:3.30.450.20 163 283 4.5E-12 T 14-09-2016 PAJ_RS11595 d2b1cb9a4abad6575609be828eb102c6 526 Pfam PF00990 Diguanylate cyclase, GGDEF domain 366 515 3.0E-43 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 SUPERFAMILY SSF52833 1 179 1.2E-54 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 PIRSF PIRSF000303 1 181 2.2E-63 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 PANTHER PTHR11592 2 180 8.0E-85 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 PRINTS PR01011 Glutathione peroxidase family signature 141 150 8.7E-19 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 PRINTS PR01011 Glutathione peroxidase family signature 21 38 8.7E-19 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 PRINTS PR01011 Glutathione peroxidase family signature 56 72 8.7E-19 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 PANTHER PTHR11592:SF40 2 180 8.0E-85 T 14-09-2016 PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 59 66 - T 14-09-2016 IPR029760 Glutathione peroxidase conserved site PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 ProSitePatterns PS00460 Glutathione peroxidases active site. 23 38 - T 14-09-2016 IPR029759 Glutathione peroxidase active site PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 Pfam PF00255 Glutathione peroxidase 3 109 2.9E-43 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05800 14dbf46ad1a8c501c22eeb7208d74d96 181 Gene3D G3DSA:3.40.30.10 1 180 4.9E-65 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS08680 943ff681f86844fcf8cfd793f63dd2d4 250 PANTHER PTHR24220 5 250 1.5E-140 T 14-09-2016 PAJ_RS08680 943ff681f86844fcf8cfd793f63dd2d4 250 PANTHER PTHR24220:SF327 5 250 1.5E-140 T 14-09-2016 PAJ_RS08680 943ff681f86844fcf8cfd793f63dd2d4 250 Pfam PF00005 ABC transporter 19 173 3.0E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS08680 943ff681f86844fcf8cfd793f63dd2d4 250 SUPERFAMILY SSF52540 4 243 4.31E-77 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08680 943ff681f86844fcf8cfd793f63dd2d4 250 SMART SM00382 28 221 2.5E-20 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS08680 943ff681f86844fcf8cfd793f63dd2d4 250 Gene3D G3DSA:3.40.50.300 3 245 2.1E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08680 943ff681f86844fcf8cfd793f63dd2d4 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS08680 943ff681f86844fcf8cfd793f63dd2d4 250 PIRSF PIRSF039085 1 249 8.8E-110 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PAJ_RS03800 220d0e57aa7dc395565b87b518812290 422 Pfam PF04403 Paraquat-inducible protein A 253 408 3.6E-53 T 14-09-2016 IPR007498 Paraquat-inducible protein A PAJ_RS03800 220d0e57aa7dc395565b87b518812290 422 Pfam PF04403 Paraquat-inducible protein A 50 201 1.3E-39 T 14-09-2016 IPR007498 Paraquat-inducible protein A PAJ_RS03800 220d0e57aa7dc395565b87b518812290 422 PANTHER PTHR30462:SF3 1 422 1.8E-222 T 14-09-2016 PAJ_RS03800 220d0e57aa7dc395565b87b518812290 422 PANTHER PTHR30462 1 422 1.8E-222 T 14-09-2016 PAJ_RS03800 220d0e57aa7dc395565b87b518812290 422 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 2 408 1.9E-154 T 14-09-2016 IPR005219 Conserved hypothetical protein CHP00155 PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 PANTHER PTHR24221:SF261 1 587 0.0 T 14-09-2016 PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 Pfam PF00005 ABC transporter 370 513 1.0E-24 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 PANTHER PTHR24221 1 587 0.0 T 14-09-2016 PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 SUPERFAMILY SSF90123 11 335 1.18E-48 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 SMART SM00382 376 560 2.5E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 Gene3D G3DSA:3.40.50.300 364 586 7.3E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 SUPERFAMILY SSF52540 349 583 6.64E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 23 556 8.0E-176 T 14-09-2016 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 Gene3D G3DSA:1.20.1560.10 22 332 1.2E-40 T 14-09-2016 PAJ_RS03560 1f7ae9be76583d74c8ca3bc1a87c52d9 589 Pfam PF00664 ABC transporter transmembrane region 34 291 1.2E-36 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 SUPERFAMILY SSF55804 500 639 1.7E-39 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 PANTHER PTHR30181:SF2 1 614 0.0 T 14-09-2016 PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 383 458 4.9E-9 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 Gene3D G3DSA:3.40.930.10 502 639 2.3E-42 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 503 638 3.0E-32 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 PANTHER PTHR30181 1 614 0.0 T 14-09-2016 PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 Gene3D G3DSA:3.40.50.10370 380 476 6.2E-40 T 14-09-2016 IPR029503 Phosphotransferase system EIIB component, mannitol-specific GO:0009401|GO:0022872 PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 SUPERFAMILY SSF52794 381 470 5.07E-22 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 543 559 - T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 8 347 3.4E-182 T 14-09-2016 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 PAJ_RS18080 d3c212db0e445af6b94e38138fe3a42c 644 Pfam PF02378 Phosphotransferase system, EIIC 17 277 6.4E-18 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 78 83 - T 14-09-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 214 225 - T 14-09-2016 IPR033116 Serine proteases, trypsin family, serine active site PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 PANTHER PTHR15462 22 261 5.3E-51 T 14-09-2016 PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 PRINTS PR00839 V8 serine protease family signature 175 188 4.1E-19 T 14-09-2016 IPR008256 Peptidase S1B GO:0006508|GO:0008236 PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 PRINTS PR00839 V8 serine protease family signature 229 241 4.1E-19 T 14-09-2016 IPR008256 Peptidase S1B GO:0006508|GO:0008236 PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 PRINTS PR00839 V8 serine protease family signature 209 225 4.1E-19 T 14-09-2016 IPR008256 Peptidase S1B GO:0006508|GO:0008236 PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 PRINTS PR00839 V8 serine protease family signature 42 59 4.1E-19 T 14-09-2016 IPR008256 Peptidase S1B GO:0006508|GO:0008236 PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 PRINTS PR00839 V8 serine protease family signature 67 84 4.1E-19 T 14-09-2016 IPR008256 Peptidase S1B GO:0006508|GO:0008236 PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 SUPERFAMILY SSF50494 28 265 4.47E-28 T 14-09-2016 IPR009003 Peptidase S1, PA clan PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 Pfam PF00089 Trypsin 52 260 2.5E-9 T 14-09-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 Gene3D G3DSA:2.40.10.10 52 163 2.4E-12 T 14-09-2016 PAJ_RS07385 ba9af480befc89a48568e92fe16fe5d0 269 Gene3D G3DSA:2.40.10.10 174 241 2.1E-8 T 14-09-2016 PAJ_RS08095 357d747f4d3044d03a792b54347280fd 522 Pfam PF03741 Integral membrane protein TerC family 14 203 1.6E-49 T 14-09-2016 IPR005496 Integral membrane protein TerC GO:0016021 PAJ_RS08095 357d747f4d3044d03a792b54347280fd 522 Pfam PF03471 Transporter associated domain 436 513 3.0E-15 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS08095 357d747f4d3044d03a792b54347280fd 522 SMART SM01091 433 514 5.8E-19 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS08095 357d747f4d3044d03a792b54347280fd 522 SUPERFAMILY SSF56176 434 520 4.36E-17 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS08095 357d747f4d3044d03a792b54347280fd 522 Gene3D G3DSA:3.30.465.10 429 520 3.2E-19 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS08095 357d747f4d3044d03a792b54347280fd 522 Gene3D G3DSA:3.10.580.10 288 428 3.1E-13 T 14-09-2016 PAJ_RS08095 357d747f4d3044d03a792b54347280fd 522 PANTHER PTHR22777:SF15 1 521 0.0 T 14-09-2016 PAJ_RS08095 357d747f4d3044d03a792b54347280fd 522 SUPERFAMILY SSF54631 291 429 5.05E-23 T 14-09-2016 PAJ_RS08095 357d747f4d3044d03a792b54347280fd 522 PANTHER PTHR22777 1 521 0.0 T 14-09-2016 PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 SUPERFAMILY SSF53187 16 205 1.22E-44 T 14-09-2016 PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 SUPERFAMILY SSF53187 369 455 1.22E-44 T 14-09-2016 PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 Pfam PF07687 Peptidase dimerisation domain 203 355 4.3E-10 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 PANTHER PTHR11014 288 459 8.7E-92 T 14-09-2016 PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 PANTHER PTHR11014 14 272 8.7E-92 T 14-09-2016 PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 Gene3D G3DSA:3.30.70.360 216 366 1.4E-32 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 Gene3D G3DSA:3.40.630.10 394 456 8.4E-46 T 14-09-2016 PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 Gene3D G3DSA:3.40.630.10 18 215 8.4E-46 T 14-09-2016 PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 PANTHER PTHR11014:SF72 288 459 8.7E-92 T 14-09-2016 PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 PANTHER PTHR11014:SF72 14 272 8.7E-92 T 14-09-2016 PAJ_RS13765 a0e43f8598e2af549d2721b1e070db3e 473 Pfam PF01546 Peptidase family M20/M25/M40 90 451 2.9E-22 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS05365 41fd54c92438f14137619f79c7c10dfd 198 Pfam PF02441 Flavoprotein 1 128 1.6E-23 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 PAJ_RS05365 41fd54c92438f14137619f79c7c10dfd 198 SUPERFAMILY SSF52507 1 185 2.88E-58 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 PAJ_RS05365 41fd54c92438f14137619f79c7c10dfd 198 Hamap MF_01986 Probable UbiX-like flavin prenyltransferase. 1 189 49.378 T 14-09-2016 IPR032901 Probable UbiX-like flavin prenyltransferase PAJ_RS05365 41fd54c92438f14137619f79c7c10dfd 198 PANTHER PTHR30108 1 189 3.8E-83 T 14-09-2016 PAJ_RS05365 41fd54c92438f14137619f79c7c10dfd 198 PANTHER PTHR30108:SF2 1 189 3.8E-83 T 14-09-2016 PAJ_RS05365 41fd54c92438f14137619f79c7c10dfd 198 Gene3D G3DSA:3.40.50.1950 1 188 4.7E-75 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 PAJ_RS05365 41fd54c92438f14137619f79c7c10dfd 198 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 1 185 35.706 T 14-09-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 PAJ_RS05365 41fd54c92438f14137619f79c7c10dfd 198 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 2 183 3.6E-71 T 14-09-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 Gene3D G3DSA:1.10.730.10 582 676 1.4E-4 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 PANTHER PTHR30075 1 689 0.0 T 14-09-2016 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 Pfam PF05746 DALR anticodon binding domain 582 677 4.7E-8 T 14-09-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 8.9E-37 T 14-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 8.9E-37 T 14-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 8.9E-37 T 14-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 8.9E-37 T 14-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 8.9E-37 T 14-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 0.0 T 14-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 26.827 T 14-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 SUPERFAMILY SSF109604 339 511 1.36E-15 T 14-09-2016 PAJ_RS18020 9d73039c7b44ea19df46fb14b192e619 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 1.0E-212 T 14-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 751 1.4E-98 T 14-09-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 SUPERFAMILY SSF53659 430 754 1.89E-90 T 14-09-2016 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 Gene3D G3DSA:3.40.50.720 161 449 4.9E-89 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 Gene3D G3DSA:3.40.50.10380 8 160 4.1E-52 T 14-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 Gene3D G3DSA:3.40.50.10750 570 727 1.1E-52 T 14-09-2016 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 SMART SM01274 18 151 1.0E-81 T 14-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 SUPERFAMILY SSF51735 163 452 1.63E-86 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 14-09-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 SMART SM00919 163 401 1.3E-138 T 14-09-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 SUPERFAMILY SSF53223 10 161 4.24E-53 T 14-09-2016 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 PIRSF PIRSF036684 1 758 0.0 T 14-09-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 PANTHER PTHR23406 31 446 1.7E-169 T 14-09-2016 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 Pfam PF03949 Malic enzyme, NAD binding domain 165 360 1.3E-19 T 14-09-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 Pfam PF00390 Malic enzyme, N-terminal domain 115 151 4.6E-6 T 14-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PAJ_RS11400 dd116cdc07c7aa9647cefe831725e5c3 759 Pfam PF00390 Malic enzyme, N-terminal domain 19 114 8.0E-22 T 14-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PAJ_RS17955 a8ad8e006679dfa1d14fd332e70b1a80 361 Gene3D G3DSA:3.40.50.300 230 352 2.9E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17955 a8ad8e006679dfa1d14fd332e70b1a80 361 Gene3D G3DSA:3.40.50.300 1 171 2.9E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17955 a8ad8e006679dfa1d14fd332e70b1a80 361 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 361 99.384 T 14-09-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 PAJ_RS17955 a8ad8e006679dfa1d14fd332e70b1a80 361 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 14-09-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 PAJ_RS17955 a8ad8e006679dfa1d14fd332e70b1a80 361 PANTHER PTHR32182:SF0 1 355 5.0E-76 T 14-09-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 PAJ_RS17955 a8ad8e006679dfa1d14fd332e70b1a80 361 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 14-09-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 PAJ_RS17955 a8ad8e006679dfa1d14fd332e70b1a80 361 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 5.2E-136 T 14-09-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 PAJ_RS17955 a8ad8e006679dfa1d14fd332e70b1a80 361 SUPERFAMILY SSF52540 1 343 2.35E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17955 a8ad8e006679dfa1d14fd332e70b1a80 361 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 353 5.1E-40 T 14-09-2016 IPR003395 RecF/RecN/SMC, N-terminal PAJ_RS17955 a8ad8e006679dfa1d14fd332e70b1a80 361 PANTHER PTHR32182 1 355 5.0E-76 T 14-09-2016 PAJ_RS04885 a5490422ad8725ffe59ef4840cf0be57 276 PANTHER PTHR11624 7 276 1.2E-83 T 14-09-2016 IPR033247 Transketolase family PAJ_RS04885 a5490422ad8725ffe59ef4840cf0be57 276 Gene3D G3DSA:3.40.50.970 5 274 4.4E-82 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS04885 a5490422ad8725ffe59ef4840cf0be57 276 PANTHER PTHR11624:SF86 7 276 1.2E-83 T 14-09-2016 PAJ_RS04885 a5490422ad8725ffe59ef4840cf0be57 276 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 31 268 2.4E-41 T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS04885 a5490422ad8725ffe59ef4840cf0be57 276 SUPERFAMILY SSF52518 5 273 4.07E-74 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS18395 f953945e1b87d183c6ee3bd04b02cccd 234 Pfam PF04340 Protein of unknown function, DUF484 12 231 3.5E-77 T 14-09-2016 IPR007435 Protein of unknown function DUF484 PAJ_RS18395 f953945e1b87d183c6ee3bd04b02cccd 234 PANTHER PTHR38765 2 234 1.5E-83 T 14-09-2016 PAJ_RS19740 f4b90b4b01b5d74e61d901be01258d0f 95 SUPERFAMILY SSF69754 2 95 1.23E-33 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PAJ_RS19740 f4b90b4b01b5d74e61d901be01258d0f 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 4.6E-34 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PAJ_RS19740 f4b90b4b01b5d74e61d901be01258d0f 95 Gene3D G3DSA:3.30.160.100 1 95 5.8E-37 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PAJ_RS19740 f4b90b4b01b5d74e61d901be01258d0f 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 93 1.2E-26 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PAJ_RS19740 f4b90b4b01b5d74e61d901be01258d0f 95 PANTHER PTHR33231 1 95 1.4E-38 T 14-09-2016 PAJ_RS04695 dfe87101eb7856b6c633757119380561 213 PANTHER PTHR38100 2 209 4.5E-89 T 14-09-2016 PAJ_RS04695 dfe87101eb7856b6c633757119380561 213 PANTHER PTHR38100:SF1 2 209 4.5E-89 T 14-09-2016 PAJ_RS04695 dfe87101eb7856b6c633757119380561 213 Pfam PF04356 Protein of unknown function (DUF489) 7 199 1.1E-74 T 14-09-2016 IPR007451 Uncharacterised protein family UPF0274 PAJ_RS04695 dfe87101eb7856b6c633757119380561 213 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 203 6.0E-81 T 14-09-2016 IPR007451 Uncharacterised protein family UPF0274 PAJ_RS04695 dfe87101eb7856b6c633757119380561 213 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 207 36.54 T 14-09-2016 IPR007451 Uncharacterised protein family UPF0274 PAJ_RS04695 dfe87101eb7856b6c633757119380561 213 Gene3D G3DSA:1.10.3890.10 2 209 4.3E-86 T 14-09-2016 IPR007451 Uncharacterised protein family UPF0274 PAJ_RS04695 dfe87101eb7856b6c633757119380561 213 SUPERFAMILY SSF101322 2 208 1.27E-79 T 14-09-2016 IPR007451 Uncharacterised protein family UPF0274 PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 Pfam PF07650 KH domain 38 111 2.9E-19 T 14-09-2016 IPR004044 K Homology domain, type 2 GO:0003723 PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 SUPERFAMILY SSF54814 2 106 9.42E-38 T 14-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 Gene3D G3DSA:3.30.300.20 18 107 6.0E-34 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 1.8E-41 T 14-09-2016 PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 SMART SM00322 60 125 3.4E-7 T 14-09-2016 IPR004087 K Homology domain GO:0003676 PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 PANTHER PTHR11760 2 232 4.1E-150 T 14-09-2016 PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 Gene3D G3DSA:3.30.1140.32 108 207 5.9E-48 T 14-09-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.27 T 14-09-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 SUPERFAMILY SSF54821 108 206 6.93E-41 T 14-09-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 PANTHER PTHR11760:SF19 2 232 4.1E-150 T 14-09-2016 PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 14-09-2016 IPR018280 Ribosomal protein S3, conserved site PAJ_RS15825 62f17ee3d560d6b80bb5eb80e883b5fb 232 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 3.6E-100 T 14-09-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 PAJ_RS17095 8107ea2809ac1affe36846677a2b8d68 397 PANTHER PTHR23502 1 386 6.8E-179 T 14-09-2016 PAJ_RS17095 8107ea2809ac1affe36846677a2b8d68 397 PANTHER PTHR23502:SF32 1 386 6.8E-179 T 14-09-2016 PAJ_RS17095 8107ea2809ac1affe36846677a2b8d68 397 Pfam PF07690 Major Facilitator Superfamily 17 351 2.2E-34 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS17095 8107ea2809ac1affe36846677a2b8d68 397 Gene3D G3DSA:1.20.1250.20 9 189 4.6E-25 T 14-09-2016 PAJ_RS17095 8107ea2809ac1affe36846677a2b8d68 397 Gene3D G3DSA:1.20.1250.20 199 387 3.3E-4 T 14-09-2016 PAJ_RS17095 8107ea2809ac1affe36846677a2b8d68 397 SUPERFAMILY SSF103473 8 390 1.11E-50 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 Gene3D G3DSA:3.40.1500.10 4 300 2.6E-134 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 164 188 - T 14-09-2016 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 PANTHER PTHR10755 1 301 1.4E-192 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 1 275 57.472 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 PRINTS PR00073 Coprogen oxidase signature 29 45 2.1E-90 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 PRINTS PR00073 Coprogen oxidase signature 46 67 2.1E-90 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 PRINTS PR00073 Coprogen oxidase signature 88 112 2.1E-90 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 PRINTS PR00073 Coprogen oxidase signature 260 286 2.1E-90 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 PRINTS PR00073 Coprogen oxidase signature 232 259 2.1E-90 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 PRINTS PR00073 Coprogen oxidase signature 123 145 2.1E-90 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 PRINTS PR00073 Coprogen oxidase signature 160 189 2.1E-90 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 PIRSF PIRSF000166 2 301 4.0E-126 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 Pfam PF01218 Coproporphyrinogen III oxidase 6 300 1.9E-132 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS11395 65cd2fe3c230d68ed53ec7c10427cfeb 304 SUPERFAMILY SSF102886 4 300 1.57E-138 T 14-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS20045 67c65e812c879353348db97d6fbeaf52 397 SUPERFAMILY SSF103473 14 393 4.84E-26 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20045 67c65e812c879353348db97d6fbeaf52 397 Gene3D G3DSA:1.20.1250.20 14 187 1.6E-15 T 14-09-2016 PAJ_RS20045 67c65e812c879353348db97d6fbeaf52 397 PANTHER PTHR23513:SF8 3 391 1.1E-179 T 14-09-2016 PAJ_RS20045 67c65e812c879353348db97d6fbeaf52 397 Hamap MF_01585 Lysophospholipid transporter LplT [lplT]. 1 395 38.937 T 14-09-2016 IPR023727 Lysophospholipid transporter LplT GO:0005886|GO:0051977|GO:0051978 PAJ_RS20045 67c65e812c879353348db97d6fbeaf52 397 PANTHER PTHR23513 3 391 1.1E-179 T 14-09-2016 PAJ_RS20045 67c65e812c879353348db97d6fbeaf52 397 Pfam PF07690 Major Facilitator Superfamily 18 344 1.9E-17 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 PRINTS PR01404 DATP pyrophosphohydrolase signature 126 139 1.4E-45 T 14-09-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 PRINTS PR01404 DATP pyrophosphohydrolase signature 20 41 1.4E-45 T 14-09-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 PRINTS PR01404 DATP pyrophosphohydrolase signature 3 20 1.4E-45 T 14-09-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 PRINTS PR01404 DATP pyrophosphohydrolase signature 71 90 1.4E-45 T 14-09-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 PRINTS PR01404 DATP pyrophosphohydrolase signature 99 120 1.4E-45 T 14-09-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 SUPERFAMILY SSF55811 2 142 1.3E-25 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 Pfam PF00293 NUDIX domain 5 141 2.7E-18 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 PANTHER PTHR22769 1 143 8.3E-54 T 14-09-2016 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 PANTHER PTHR22769:SF28 1 143 8.3E-54 T 14-09-2016 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 Gene3D G3DSA:3.90.79.10 2 143 3.5E-32 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS08395 bf574868e52cbf837d83d836c81de83f 143 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PAJ_RS09975 ed0210a7fb9a3a370598c0f61d8f268a 607 Pfam PF13502 AsmA-like C-terminal region 350 533 4.1E-20 T 14-09-2016 IPR032712 AsmA-like, C-terminal PAJ_RS09975 ed0210a7fb9a3a370598c0f61d8f268a 607 PANTHER PTHR30441:SF4 1 593 7.3E-106 T 14-09-2016 PAJ_RS09975 ed0210a7fb9a3a370598c0f61d8f268a 607 Pfam PF05170 AsmA family 5 174 3.3E-16 T 14-09-2016 IPR007844 AsmA PAJ_RS09975 ed0210a7fb9a3a370598c0f61d8f268a 607 PANTHER PTHR30441 1 593 7.3E-106 T 14-09-2016 PAJ_RS19230 4160f8f4b54808fa3fdd9a09536de819 199 PANTHER PTHR13170 7 199 2.0E-44 T 14-09-2016 PAJ_RS19230 4160f8f4b54808fa3fdd9a09536de819 199 Pfam PF00583 Acetyltransferase (GNAT) family 136 184 1.0E-5 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS19230 4160f8f4b54808fa3fdd9a09536de819 199 Gene3D G3DSA:3.40.630.30 6 76 1.2E-28 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS19230 4160f8f4b54808fa3fdd9a09536de819 199 Gene3D G3DSA:3.40.630.30 120 187 1.2E-28 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS19230 4160f8f4b54808fa3fdd9a09536de819 199 SUPERFAMILY SSF55729 7 187 5.05E-20 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS04235 0faf83e8b6a040c1341a2723ce7e7f77 420 Gene3D G3DSA:1.10.150.20 169 239 1.6E-22 T 14-09-2016 PAJ_RS04235 0faf83e8b6a040c1341a2723ce7e7f77 420 Pfam PF11799 impB/mucB/samB family C-terminal domain 242 350 3.3E-12 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS04235 0faf83e8b6a040c1341a2723ce7e7f77 420 Gene3D G3DSA:3.30.70.270 67 157 1.4E-23 T 14-09-2016 PAJ_RS04235 0faf83e8b6a040c1341a2723ce7e7f77 420 SUPERFAMILY SSF56672 1 236 1.6E-69 T 14-09-2016 PAJ_RS04235 0faf83e8b6a040c1341a2723ce7e7f77 420 Pfam PF13438 Domain of unknown function (DUF4113) 370 419 3.8E-19 T 14-09-2016 IPR025188 Domain of unknown function DUF4113 PAJ_RS04235 0faf83e8b6a040c1341a2723ce7e7f77 420 Pfam PF00817 impB/mucB/samB family 5 150 9.5E-35 T 14-09-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS04235 0faf83e8b6a040c1341a2723ce7e7f77 420 PANTHER PTHR11076:SF40 1 382 6.5E-191 T 14-09-2016 PAJ_RS04235 0faf83e8b6a040c1341a2723ce7e7f77 420 Gene3D G3DSA:3.30.1490.100 245 351 2.5E-5 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS04235 0faf83e8b6a040c1341a2723ce7e7f77 420 SUPERFAMILY SSF100879 245 344 3.14E-6 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS04235 0faf83e8b6a040c1341a2723ce7e7f77 420 PANTHER PTHR11076 1 382 6.5E-191 T 14-09-2016 PAJ_RS10765 bdb37ef67a88bdb04e8825c92e17b778 260 PANTHER PTHR18966 28 253 2.0E-129 T 14-09-2016 PAJ_RS10765 bdb37ef67a88bdb04e8825c92e17b778 260 Gene3D G3DSA:3.40.190.10 27 113 4.9E-45 T 14-09-2016 PAJ_RS10765 bdb37ef67a88bdb04e8825c92e17b778 260 Gene3D G3DSA:3.40.190.10 215 257 4.9E-45 T 14-09-2016 PAJ_RS10765 bdb37ef67a88bdb04e8825c92e17b778 260 PANTHER PTHR18966:SF237 28 253 2.0E-129 T 14-09-2016 PAJ_RS10765 bdb37ef67a88bdb04e8825c92e17b778 260 SUPERFAMILY SSF53850 27 257 3.72E-68 T 14-09-2016 PAJ_RS10765 bdb37ef67a88bdb04e8825c92e17b778 260 SMART SM00062 27 256 6.9E-78 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS10765 bdb37ef67a88bdb04e8825c92e17b778 260 Gene3D G3DSA:3.40.190.10 115 212 1.4E-31 T 14-09-2016 PAJ_RS10765 bdb37ef67a88bdb04e8825c92e17b778 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 2.4E-65 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS10765 bdb37ef67a88bdb04e8825c92e17b778 260 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 253 3.0E-98 T 14-09-2016 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 PAJ_RS10765 bdb37ef67a88bdb04e8825c92e17b778 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS15105 ab1c4621aff65d3928f9fd092cdcbdbf 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 5.3E-16 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS15105 ab1c4621aff65d3928f9fd092cdcbdbf 307 SUPERFAMILY SSF46785 8 91 1.8E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15105 ab1c4621aff65d3928f9fd092cdcbdbf 307 Pfam PF03466 LysR substrate binding domain 95 289 7.2E-17 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS15105 ab1c4621aff65d3928f9fd092cdcbdbf 307 PANTHER PTHR30126:SF22 6 297 7.6E-206 T 14-09-2016 PAJ_RS15105 ab1c4621aff65d3928f9fd092cdcbdbf 307 SUPERFAMILY SSF53850 93 291 5.73E-23 T 14-09-2016 PAJ_RS15105 ab1c4621aff65d3928f9fd092cdcbdbf 307 Gene3D G3DSA:1.10.10.10 7 92 3.2E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15105 ab1c4621aff65d3928f9fd092cdcbdbf 307 Gene3D G3DSA:3.40.190.10 178 265 2.4E-9 T 14-09-2016 PAJ_RS15105 ab1c4621aff65d3928f9fd092cdcbdbf 307 PANTHER PTHR30126 6 297 7.6E-206 T 14-09-2016 PAJ_RS15105 ab1c4621aff65d3928f9fd092cdcbdbf 307 Gene3D G3DSA:3.40.190.10 94 177 6.8E-9 T 14-09-2016 PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 Gene3D G3DSA:1.20.1180.10 197 262 1.1E-26 T 14-09-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 4.8E-109 T 14-09-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 PANTHER PTHR23416 1 254 1.0E-138 T 14-09-2016 PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 PIRSF PIRSF000456 5 262 1.8E-107 T 14-09-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 PANTHER PTHR23416:SF8 1 254 1.0E-138 T 14-09-2016 PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 SUPERFAMILY SSF51161 2 262 4.9E-81 T 14-09-2016 IPR011004 Trimeric LpxA-like PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 153 181 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 Gene3D G3DSA:2.160.10.10 6 194 2.7E-50 T 14-09-2016 PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 5.8E-8 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 52 3.3E-8 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 47.676 T 14-09-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 PAJ_RS00750 85ecfda4e19880b7a18124bc1111f23f 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 3.3E-29 T 14-09-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 PAJ_RS15775 a72f61c7620b61a49800f308ad25a2e4 117 PANTHER PTHR12899 1 117 1.1E-47 T 14-09-2016 PAJ_RS15775 a72f61c7620b61a49800f308ad25a2e4 117 Gene3D G3DSA:3.30.420.100 24 117 2.8E-36 T 14-09-2016 PAJ_RS15775 a72f61c7620b61a49800f308ad25a2e4 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 2.9E-43 T 14-09-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15775 a72f61c7620b61a49800f308ad25a2e4 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 3.2E-46 T 14-09-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15775 a72f61c7620b61a49800f308ad25a2e4 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.045 T 14-09-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15775 a72f61c7620b61a49800f308ad25a2e4 117 SUPERFAMILY SSF53137 3 115 5.45E-53 T 14-09-2016 PAJ_RS19165 8e1902f730e3d137679434b48e8ef7b3 145 Gene3D G3DSA:3.10.180.10 8 142 3.3E-39 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS19165 8e1902f730e3d137679434b48e8ef7b3 145 SUPERFAMILY SSF54593 1 139 2.25E-30 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS19165 8e1902f730e3d137679434b48e8ef7b3 145 PANTHER PTHR33990:SF1 1 142 1.4E-41 T 14-09-2016 PAJ_RS19165 8e1902f730e3d137679434b48e8ef7b3 145 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 137 3.1E-8 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PAJ_RS19165 8e1902f730e3d137679434b48e8ef7b3 145 PANTHER PTHR33990 1 142 1.4E-41 T 14-09-2016 PAJ_RS20255 ca8390f3b0ddfd50790e1bdaa5fcb31e 678 SUPERFAMILY SSF58113 337 493 7.98E-5 T 14-09-2016 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 PANTHER PTHR24423 11 349 2.0E-178 T 14-09-2016 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 SUPERFAMILY SSF55785 11 101 1.8E-6 T 14-09-2016 IPR000014 PAS domain PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 SUPERFAMILY SSF55874 198 346 3.54E-37 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 SMART SM00388 129 194 2.8E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 Pfam PF00989 PAS fold 11 97 7.5E-7 T 14-09-2016 IPR013767 PAS fold GO:0006355 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 SMART SM00091 7 75 1.6E-6 T 14-09-2016 IPR000014 PAS domain PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 186 8.3E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 346 1.2E-11 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 1.2E-11 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 295 1.2E-11 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 Gene3D G3DSA:1.10.287.130 129 186 5.6E-11 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 PANTHER PTHR24423:SF488 11 349 2.0E-178 T 14-09-2016 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 SMART SM00387 233 349 6.8E-33 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 Gene3D G3DSA:3.30.450.20 11 102 2.0E-19 T 14-09-2016 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 SUPERFAMILY SSF47384 121 186 1.77E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 347 3.2E-16 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS17455 62d092c845ce906e8a9c047d4435c7be 349 Gene3D G3DSA:3.30.565.10 198 348 3.0E-37 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 SUPERFAMILY SSF143243 24 228 9.81E-60 T 14-09-2016 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 214 599 2.7E-173 T 14-09-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 PANTHER PTHR11993:SF28 146 594 2.3E-302 T 14-09-2016 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 104 159 7.0E-23 T 14-09-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 Gene3D G3DSA:1.10.645.10 431 579 3.7E-12 T 14-09-2016 IPR029014 NiFe hydrogenase-like PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 48 175 1.1E-44 T 14-09-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 24 184 25.109 T 14-09-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 SUPERFAMILY SSF56762 224 599 6.67E-118 T 14-09-2016 IPR029014 NiFe hydrogenase-like PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 251 262 - T 14-09-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 PANTHER PTHR11993 146 594 2.3E-302 T 14-09-2016 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 15 599 71.896 T 14-09-2016 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 49 177 4.6E-41 T 14-09-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 328 599 6.7E-102 T 14-09-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 210 599 41.909 T 14-09-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 PAJ_RS10620 fe155abe0b6b2e18c503a68355de7104 599 Gene3D G3DSA:1.10.645.10 215 430 6.0E-35 T 14-09-2016 IPR029014 NiFe hydrogenase-like PAJ_RS08850 bb0c86c3d4dae8e7a4354867701b2208 98 Pfam PF10796 Sigma-S stabilisation anti-adaptor protein 1 85 2.7E-28 T 14-09-2016 IPR019732 Sigma-S stabilisation anti-adaptor protein GO:0005737 PAJ_RS03155 9dd9ce8897604d7feff4ae398cb604a1 176 SUPERFAMILY SSF55729 15 171 3.11E-26 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS03155 9dd9ce8897604d7feff4ae398cb604a1 176 Gene3D G3DSA:3.40.630.30 1 172 1.2E-36 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS03155 9dd9ce8897604d7feff4ae398cb604a1 176 Pfam PF13673 Acetyltransferase (GNAT) domain 54 149 1.5E-14 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS03155 9dd9ce8897604d7feff4ae398cb604a1 176 PANTHER PTHR23091:SF243 18 154 2.9E-20 T 14-09-2016 PAJ_RS03155 9dd9ce8897604d7feff4ae398cb604a1 176 PANTHER PTHR23091 18 154 2.9E-20 T 14-09-2016 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 9.6E-171 T 14-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 PANTHER PTHR19375:SF117 9 336 2.7E-191 T 14-09-2016 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.30.420.40 9 163 1.8E-46 T 14-09-2016 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 SUPERFAMILY SSF53067 9 152 8.89E-38 T 14-09-2016 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 SUPERFAMILY SSF53067 153 340 3.69E-50 T 14-09-2016 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 Pfam PF06723 MreB/Mbl protein 11 338 1.4E-150 T 14-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.30.420.40 267 321 2.1E-35 T 14-09-2016 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.30.420.40 164 190 2.1E-35 T 14-09-2016 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.90.640.10 191 263 8.7E-31 T 14-09-2016 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 PANTHER PTHR19375 9 336 2.7E-191 T 14-09-2016 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.2E-65 T 14-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.2E-65 T 14-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.2E-65 T 14-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.2E-65 T 14-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PAJ_RS15550 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.2E-65 T 14-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 643 45.171 T 14-09-2016 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 SUPERFAMILY SSF50249 9 80 1.5E-14 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 642 0.0 T 14-09-2016 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 14-09-2016 IPR022966 Ribonuclease II/R, conserved site PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 SUPERFAMILY SSF50249 181 555 3.98E-115 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 Pfam PF00773 RNB domain 189 516 2.1E-86 T 14-09-2016 PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 SMART SM00357 23 79 8.2E-14 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 SUPERFAMILY SSF50249 561 642 3.51E-19 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 SMART SM00955 189 517 1.1E-123 T 14-09-2016 PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 SUPERFAMILY SSF50249 83 171 2.31E-32 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 PANTHER PTHR23355 23 642 0.0 T 14-09-2016 PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 PANTHER PTHR23355:SF37 23 642 0.0 T 14-09-2016 PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 Pfam PF08206 Ribonuclease B OB domain 24 80 6.1E-19 T 14-09-2016 IPR013223 Ribonuclease B, N-terminal OB domain PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 Pfam PF00575 S1 RNA binding domain 561 638 4.3E-9 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS07555 1403d15f0022510d44dd9ad88ae04fe8 644 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 641 1.0E-224 T 14-09-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 SUPERFAMILY SSF51905 1 314 8.42E-55 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PANTHER PTHR22912 1 314 3.5E-167 T 14-09-2016 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 2.2E-123 T 14-09-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 Gene3D G3DSA:3.50.50.60 232 315 1.3E-9 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 14-09-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 9.1E-77 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 9.1E-77 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 9.1E-77 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 9.1E-77 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 9.1E-77 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 9.1E-77 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 9.1E-77 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 9.1E-77 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 9.1E-77 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 Gene3D G3DSA:3.50.50.60 4 119 2.5E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PANTHER PTHR22912:SF48 1 314 3.5E-167 T 14-09-2016 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 1.5E-51 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 2.5E-41 T 14-09-2016 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 2.5E-41 T 14-09-2016 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 2.5E-41 T 14-09-2016 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 2.5E-41 T 14-09-2016 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 2.5E-41 T 14-09-2016 PAJ_RS03565 915d99f9cd3dc3d50d470434246c4a2f 321 Gene3D G3DSA:3.50.50.60 120 231 7.0E-34 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS05355 b06dfdfe04de4e831644ea444fbfab3f 160 PANTHER PTHR11592 1 159 1.8E-83 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05355 b06dfdfe04de4e831644ea444fbfab3f 160 PRINTS PR01011 Glutathione peroxidase family signature 122 131 7.3E-21 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05355 b06dfdfe04de4e831644ea444fbfab3f 160 PRINTS PR01011 Glutathione peroxidase family signature 22 39 7.3E-21 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05355 b06dfdfe04de4e831644ea444fbfab3f 160 PRINTS PR01011 Glutathione peroxidase family signature 57 73 7.3E-21 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05355 b06dfdfe04de4e831644ea444fbfab3f 160 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 14-09-2016 IPR029759 Glutathione peroxidase active site PAJ_RS05355 b06dfdfe04de4e831644ea444fbfab3f 160 SUPERFAMILY SSF52833 3 158 4.86E-60 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS05355 b06dfdfe04de4e831644ea444fbfab3f 160 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 60 67 - T 14-09-2016 IPR029760 Glutathione peroxidase conserved site PAJ_RS05355 b06dfdfe04de4e831644ea444fbfab3f 160 PIRSF PIRSF000303 1 160 9.3E-66 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05355 b06dfdfe04de4e831644ea444fbfab3f 160 Pfam PF00255 Glutathione peroxidase 4 111 1.7E-40 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PAJ_RS05355 b06dfdfe04de4e831644ea444fbfab3f 160 Gene3D G3DSA:3.40.30.10 3 159 1.5E-67 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 SUPERFAMILY SSF56059 480 687 2.36E-26 T 14-09-2016 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 147 279 1.2E-43 T 14-09-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 Pfam PF00583 Acetyltransferase (GNAT) family 792 863 3.8E-6 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 Gene3D G3DSA:3.30.470.20 488 558 2.2E-4 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 Gene3D G3DSA:3.40.50.261 129 278 1.0E-24 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 SUPERFAMILY SSF52210 286 447 1.23E-36 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 SUPERFAMILY SSF55729 728 865 1.27E-16 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 SMART SM00881 9 104 1.2E-23 T 14-09-2016 IPR003781 CoA-binding GO:0048037 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 SUPERFAMILY SSF52210 125 287 3.27E-36 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 Gene3D G3DSA:3.40.50.720 1 128 2.1E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 SUPERFAMILY SSF51735 2 136 7.16E-32 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 PANTHER PTHR11117 29 699 2.1E-224 T 14-09-2016 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 Gene3D G3DSA:3.40.630.30 719 875 2.0E-19 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 Gene3D G3DSA:3.40.50.261 279 437 7.0E-14 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 Pfam PF13549 ATP-grasp domain 472 694 5.6E-72 T 14-09-2016 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 PANTHER PTHR11117:SF8 29 699 2.1E-224 T 14-09-2016 PAJ_RS12580 0cfbdae3e88c57f99b59484b6ba5901f 891 Pfam PF13380 CoA binding domain 13 129 4.6E-20 T 14-09-2016 IPR003781 CoA-binding GO:0048037 PAJ_RS14160 bb908df95ac15c605f25fd3007c51aa1 237 Gene3D G3DSA:3.40.50.1580 10 233 2.9E-84 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS14160 bb908df95ac15c605f25fd3007c51aa1 237 PANTHER PTHR21234:SF8 3 234 1.7E-84 T 14-09-2016 PAJ_RS14160 bb908df95ac15c605f25fd3007c51aa1 237 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 7.1E-126 T 14-09-2016 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 PAJ_RS14160 bb908df95ac15c605f25fd3007c51aa1 237 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 52.902 T 14-09-2016 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 PAJ_RS14160 bb908df95ac15c605f25fd3007c51aa1 237 PANTHER PTHR21234 3 234 1.7E-84 T 14-09-2016 IPR018017 Nucleoside phosphorylase PAJ_RS14160 bb908df95ac15c605f25fd3007c51aa1 237 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 14-09-2016 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 PAJ_RS14160 bb908df95ac15c605f25fd3007c51aa1 237 SUPERFAMILY SSF53167 3 234 5.63E-95 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS14160 bb908df95ac15c605f25fd3007c51aa1 237 Pfam PF01048 Phosphorylase superfamily 15 218 2.4E-40 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS07060 968d2664ad7e5d78ae202348e2d21478 490 PANTHER PTHR11699 13 490 3.0E-178 T 14-09-2016 PAJ_RS07060 968d2664ad7e5d78ae202348e2d21478 490 SUPERFAMILY SSF53720 11 489 8.38E-146 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS07060 968d2664ad7e5d78ae202348e2d21478 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 258 265 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS07060 968d2664ad7e5d78ae202348e2d21478 490 Gene3D G3DSA:3.40.605.10 12 272 1.2E-87 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS07060 968d2664ad7e5d78ae202348e2d21478 490 Pfam PF00171 Aldehyde dehydrogenase family 21 486 4.3E-141 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS07060 968d2664ad7e5d78ae202348e2d21478 490 Gene3D G3DSA:3.40.309.10 273 450 1.3E-52 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS00060 362203ad768e4855973900dd9e9c29c9 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 14 86 1.0E-32 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00060 362203ad768e4855973900dd9e9c29c9 87 Pfam PF01649 Ribosomal protein S20 2 84 6.5E-28 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00060 362203ad768e4855973900dd9e9c29c9 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 87 2.1E-33 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00060 362203ad768e4855973900dd9e9c29c9 87 SUPERFAMILY SSF46992 3 86 8.63E-31 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00060 362203ad768e4855973900dd9e9c29c9 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.234 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00060 362203ad768e4855973900dd9e9c29c9 87 PANTHER PTHR33398 2 87 5.9E-39 T 14-09-2016 PAJ_RS00060 362203ad768e4855973900dd9e9c29c9 87 Gene3D G3DSA:1.20.58.110 3 87 4.7E-31 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS16855 1902bd5c74b73a0d3738d635cf828407 413 Pfam PF07690 Major Facilitator Superfamily 12 231 1.5E-13 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS16855 1902bd5c74b73a0d3738d635cf828407 413 PANTHER PTHR23513 1 411 5.4E-44 T 14-09-2016 PAJ_RS16855 1902bd5c74b73a0d3738d635cf828407 413 SUPERFAMILY SSF103473 11 395 1.28E-33 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS16855 1902bd5c74b73a0d3738d635cf828407 413 Gene3D G3DSA:1.20.1250.20 215 394 2.5E-15 T 14-09-2016 PAJ_RS16855 1902bd5c74b73a0d3738d635cf828407 413 Gene3D G3DSA:1.20.1250.20 11 191 4.2E-13 T 14-09-2016 PAJ_RS14125 35e44147ed844101c00edbb879cbd585 319 PANTHER PTHR30349 5 317 1.5E-22 T 14-09-2016 PAJ_RS14125 35e44147ed844101c00edbb879cbd585 319 Pfam PF00589 Phage integrase family 153 304 5.8E-18 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS14125 35e44147ed844101c00edbb879cbd585 319 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 14 89 1.5E-5 T 14-09-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 PAJ_RS14125 35e44147ed844101c00edbb879cbd585 319 PANTHER PTHR30349:SF20 5 317 1.5E-22 T 14-09-2016 PAJ_RS14125 35e44147ed844101c00edbb879cbd585 319 Gene3D G3DSA:1.10.443.10 113 313 8.7E-28 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS14125 35e44147ed844101c00edbb879cbd585 319 SUPERFAMILY SSF56349 5 312 2.38E-41 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PAJ_RS14125 35e44147ed844101c00edbb879cbd585 319 Gene3D G3DSA:1.10.150.130 5 101 4.5E-7 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal PAJ_RS03815 9e6717e3d2c1fd13a9b6a819e7526d32 172 Pfam PF07977 FabA-like domain 29 158 3.8E-54 T 14-09-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 PAJ_RS03815 9e6717e3d2c1fd13a9b6a819e7526d32 172 SUPERFAMILY SSF54637 3 169 2.32E-56 T 14-09-2016 IPR029069 HotDog domain PAJ_RS03815 9e6717e3d2c1fd13a9b6a819e7526d32 172 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 171 2.0E-93 T 14-09-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PAJ_RS03815 9e6717e3d2c1fd13a9b6a819e7526d32 172 Gene3D G3DSA:3.10.129.10 2 169 4.6E-59 T 14-09-2016 IPR029069 HotDog domain PAJ_RS03815 9e6717e3d2c1fd13a9b6a819e7526d32 172 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 172 50.895 T 14-09-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 Pfam PF00989 PAS fold 181 293 5.4E-14 T 14-09-2016 IPR013767 PAS fold GO:0006355 PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 Gene3D G3DSA:3.30.70.270 310 468 1.4E-47 T 14-09-2016 PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 Gene3D G3DSA:3.30.450.20 170 294 1.8E-20 T 14-09-2016 PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 SMART SM00065 33 176 0.0015 T 14-09-2016 IPR003018 GAF domain GO:0005515 PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 SMART SM00052 472 714 4.5E-46 T 14-09-2016 IPR001633 EAL domain PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 Gene3D G3DSA:3.20.20.450 476 719 1.4E-61 T 14-09-2016 IPR001633 EAL domain PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 Pfam PF00990 Diguanylate cyclase, GGDEF domain 307 457 1.6E-35 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 SMART SM00091 180 246 4.5E-11 T 14-09-2016 IPR000014 PAS domain PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 SMART SM00267 296 462 1.6E-46 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 177 303 1.6E-22 T 14-09-2016 IPR000014 PAS domain PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 Pfam PF00563 EAL domain 478 705 4.0E-49 T 14-09-2016 IPR001633 EAL domain PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 SUPERFAMILY SSF55781 34 171 5.89E-22 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 306 461 7.7E-33 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 SUPERFAMILY SSF55073 312 464 6.83E-41 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 PANTHER PTHR10799:SF774 147 295 6.5E-59 T 14-09-2016 PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 SUPERFAMILY SSF141868 477 720 7.19E-59 T 14-09-2016 IPR001633 EAL domain PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 PANTHER PTHR10799:SF774 336 572 6.5E-59 T 14-09-2016 PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 PANTHER PTHR10799 336 572 6.5E-59 T 14-09-2016 PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 PANTHER PTHR10799 147 295 6.5E-59 T 14-09-2016 PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 Pfam PF01590 GAF domain 36 162 2.5E-8 T 14-09-2016 IPR003018 GAF domain GO:0005515 PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 Gene3D G3DSA:3.30.450.40 19 167 1.3E-9 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS14880 d7e9d4a0a647b0563903130abf0e6cde 724 SUPERFAMILY SSF55785 191 303 1.31E-20 T 14-09-2016 IPR000014 PAS domain PAJ_RS03860 630103df2c5da41ca6da67f5a2511cc2 152 SMART SM00851 25 118 3.4E-23 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS03860 630103df2c5da41ca6da67f5a2511cc2 152 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 1.0E-69 T 14-09-2016 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 PAJ_RS03860 630103df2c5da41ca6da67f5a2511cc2 152 SUPERFAMILY SSF52335 3 147 5.19E-58 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS03860 630103df2c5da41ca6da67f5a2511cc2 152 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 38.694 T 14-09-2016 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 PAJ_RS03860 630103df2c5da41ca6da67f5a2511cc2 152 PIRSF PIRSF006614 8 151 1.9E-65 T 14-09-2016 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 PAJ_RS03860 630103df2c5da41ca6da67f5a2511cc2 152 PANTHER PTHR30492 2 151 5.6E-87 T 14-09-2016 PAJ_RS03860 630103df2c5da41ca6da67f5a2511cc2 152 Gene3D G3DSA:3.40.50.1380 3 151 7.2E-65 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS03860 630103df2c5da41ca6da67f5a2511cc2 152 Pfam PF02142 MGS-like domain 26 118 5.7E-18 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain PAJ_RS03860 630103df2c5da41ca6da67f5a2511cc2 152 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 14-09-2016 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 SUPERFAMILY SSF56024 500 683 2.43E-69 T 14-09-2016 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 Pfam PF13090 Polyphosphate kinase C-terminal domain 331 676 1.1E-145 T 14-09-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 PANTHER PTHR30218:SF0 6 686 0.0 T 14-09-2016 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 Gene3D G3DSA:3.30.870.10 500 683 1.0E-70 T 14-09-2016 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 SUPERFAMILY SSF143724 107 312 3.92E-59 T 14-09-2016 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 Gene3D G3DSA:3.30.870.10 316 499 1.7E-74 T 14-09-2016 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 681 34.191 T 14-09-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 SUPERFAMILY SSF140356 5 105 2.88E-34 T 14-09-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 Gene3D G3DSA:3.30.1840.10 106 300 2.4E-52 T 14-09-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 PIRSF PIRSF015589 1 686 1.0E-243 T 14-09-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 109 1.4E-31 T 14-09-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 Pfam PF02503 Polyphosphate kinase middle domain 119 320 1.3E-42 T 14-09-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 PANTHER PTHR30218 6 686 0.0 T 14-09-2016 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 SUPERFAMILY SSF56024 315 497 7.53E-57 T 14-09-2016 PAJ_RS11680 60a715593c51f774fd5e95597530ac81 686 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 677 4.0E-258 T 14-09-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 PANTHER PTHR10277:SF9 1 508 1.9E-257 T 14-09-2016 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 4.0E-249 T 14-09-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 14-09-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 Pfam PF00682 HMGL-like 4 273 6.6E-105 T 14-09-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 4.0E-35 T 14-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 SMART SM00917 369 500 1.8E-37 T 14-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 14-09-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 SUPERFAMILY SSF51569 1 291 1.3E-99 T 14-09-2016 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 PANTHER PTHR10277 1 508 1.9E-257 T 14-09-2016 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 Gene3D G3DSA:3.20.20.70 1 347 2.7E-143 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 SUPERFAMILY SSF110921 393 499 2.09E-25 T 14-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS00260 27f5167a6a6d05e6982ecf2e82b4fdc8 520 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 42.305 T 14-09-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PAJ_RS11805 78339e5f3ee208d68f7612b924ba21f9 402 SUPERFAMILY SSF56349 98 384 5.3E-64 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PAJ_RS11805 78339e5f3ee208d68f7612b924ba21f9 402 PANTHER PTHR30629:SF2 1 392 7.0E-93 T 14-09-2016 PAJ_RS11805 78339e5f3ee208d68f7612b924ba21f9 402 Pfam PF13356 Domain of unknown function (DUF4102) 2 88 2.8E-17 T 14-09-2016 IPR025166 Domain of unknown function DUF4102 PAJ_RS11805 78339e5f3ee208d68f7612b924ba21f9 402 PANTHER PTHR30629 1 392 7.0E-93 T 14-09-2016 PAJ_RS11805 78339e5f3ee208d68f7612b924ba21f9 402 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 98 146 3.1E-6 T 14-09-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 PAJ_RS11805 78339e5f3ee208d68f7612b924ba21f9 402 Gene3D G3DSA:1.10.443.10 202 382 3.0E-30 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS11805 78339e5f3ee208d68f7612b924ba21f9 402 Pfam PF00589 Phage integrase family 203 373 1.7E-22 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS11805 78339e5f3ee208d68f7612b924ba21f9 402 Gene3D G3DSA:1.10.150.130 98 191 9.5E-23 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 PANTHER PTHR32089:SF63 257 525 5.3E-110 T 14-09-2016 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 332 521 1.2E-57 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 SUPERFAMILY SSF58104 257 521 9.94E-64 T 14-09-2016 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 Gene3D G3DSA:1.10.287.950 289 494 2.3E-55 T 14-09-2016 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 10 35 1.5E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 296 325 1.5E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 402 431 1.5E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 450 479 1.5E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 373 400 1.5E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 SMART SM00283 275 522 6.5E-85 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 PANTHER PTHR32089 257 525 5.3E-110 T 14-09-2016 PAJ_RS04590 fa46fd5f17c5e84b1bf69cf1ab659b1d 527 Pfam PF12729 Four helix bundle sensory module for signal transduction 10 187 1.8E-13 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS11310 f17983c057d731b9d84b821029802548 332 PANTHER PTHR38685 2 331 3.3E-76 T 14-09-2016 PAJ_RS11310 f17983c057d731b9d84b821029802548 332 PANTHER PTHR38685:SF1 2 331 3.3E-76 T 14-09-2016 PAJ_RS11310 f17983c057d731b9d84b821029802548 332 Gene3D G3DSA:3.30.1400.10 193 327 7.4E-62 T 14-09-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 PAJ_RS11310 f17983c057d731b9d84b821029802548 332 SUPERFAMILY SSF64383 195 328 2.62E-48 T 14-09-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 PAJ_RS11310 f17983c057d731b9d84b821029802548 332 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 197 323 5.6E-50 T 14-09-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 PAJ_RS11310 f17983c057d731b9d84b821029802548 332 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 197 330 1.0E-64 T 14-09-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 PAJ_RS11310 f17983c057d731b9d84b821029802548 332 SMART SM00771 194 324 2.4E-77 T 14-09-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 PAJ_RS11310 f17983c057d731b9d84b821029802548 332 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 326 28.126 T 14-09-2016 IPR011919 Cell division protein ZipA GO:0000917|GO:0007049|GO:0016021 PAJ_RS11310 f17983c057d731b9d84b821029802548 332 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 4 324 9.1E-90 T 14-09-2016 IPR011919 Cell division protein ZipA GO:0000917|GO:0007049|GO:0016021 PAJ_RS06525 a4574d95a435c1ee31d458b2ec27e8a1 181 SMART SM00530 11 66 2.8E-12 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS06525 a4574d95a435c1ee31d458b2ec27e8a1 181 Pfam PF07883 Cupin domain 106 173 1.4E-9 T 14-09-2016 IPR013096 Cupin 2, conserved barrel PAJ_RS06525 a4574d95a435c1ee31d458b2ec27e8a1 181 Gene3D G3DSA:1.10.260.40 2 68 1.3E-22 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS06525 a4574d95a435c1ee31d458b2ec27e8a1 181 Gene3D G3DSA:2.60.120.10 87 177 7.0E-28 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS06525 a4574d95a435c1ee31d458b2ec27e8a1 181 Pfam PF01381 Helix-turn-helix 12 65 1.3E-15 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS06525 a4574d95a435c1ee31d458b2ec27e8a1 181 PANTHER PTHR10245 1 177 3.9E-52 T 14-09-2016 PAJ_RS06525 a4574d95a435c1ee31d458b2ec27e8a1 181 PANTHER PTHR10245:SF9 1 177 3.9E-52 T 14-09-2016 PAJ_RS06525 a4574d95a435c1ee31d458b2ec27e8a1 181 SUPERFAMILY SSF51182 51 176 1.54E-21 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS06525 a4574d95a435c1ee31d458b2ec27e8a1 181 SUPERFAMILY SSF47413 3 68 1.26E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS12895 542e16b5bb7ec79af6592b24289a1fc9 130 PANTHER PTHR11803 20 123 3.9E-24 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family PAJ_RS12895 542e16b5bb7ec79af6592b24289a1fc9 130 SUPERFAMILY SSF55298 18 125 2.2E-28 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PAJ_RS12895 542e16b5bb7ec79af6592b24289a1fc9 130 Pfam PF01042 Endoribonuclease L-PSP 20 123 4.7E-22 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family PAJ_RS12895 542e16b5bb7ec79af6592b24289a1fc9 130 Gene3D G3DSA:3.30.1330.40 16 125 1.5E-27 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PAJ_RS18540 2334f1b4079688a2b3289f3dfd77bc58 252 PANTHER PTHR30371:SF0 4 252 6.9E-117 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PAJ_RS18540 2334f1b4079688a2b3289f3dfd77bc58 252 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 226 4.8E-78 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PAJ_RS18540 2334f1b4079688a2b3289f3dfd77bc58 252 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 4 242 17.946 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PAJ_RS18540 2334f1b4079688a2b3289f3dfd77bc58 252 PANTHER PTHR30371 4 252 6.9E-117 T 14-09-2016 PAJ_RS18540 2334f1b4079688a2b3289f3dfd77bc58 252 Pfam PF00902 Sec-independent protein translocase protein (TatC) 12 221 1.7E-66 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PAJ_RS18540 2334f1b4079688a2b3289f3dfd77bc58 252 ProSitePatterns PS01218 TatC family signature. 154 173 - T 14-09-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site PAJ_RS18540 2334f1b4079688a2b3289f3dfd77bc58 252 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 103 129 1.1E-50 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PAJ_RS18540 2334f1b4079688a2b3289f3dfd77bc58 252 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 154 182 1.1E-50 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PAJ_RS18540 2334f1b4079688a2b3289f3dfd77bc58 252 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 85 103 1.1E-50 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PAJ_RS18540 2334f1b4079688a2b3289f3dfd77bc58 252 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 8 35 1.1E-50 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 Gene3D G3DSA:3.40.50.880 1 207 2.6E-37 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 Pfam PF01965 DJ-1/PfpI family 45 186 1.1E-13 T 14-09-2016 IPR002818 DJ-1/PfpI PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 PANTHER PTHR11019 48 330 1.1E-33 T 14-09-2016 PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 SUPERFAMILY SSF52317 1 204 1.4E-34 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 SUPERFAMILY SSF46689 275 324 1.02E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 PANTHER PTHR11019:SF68 48 330 1.1E-33 T 14-09-2016 PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 Gene3D G3DSA:1.10.10.60 222 276 2.7E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 Gene3D G3DSA:1.10.10.60 277 324 8.8E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 Pfam PF12833 Helix-turn-helix domain 245 323 8.7E-22 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 276 318 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS19510 e578c0bce9540180c2e07fd69fe7590b 334 SMART SM00342 239 322 8.6E-26 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 255 376 4.3E-54 T 14-09-2016 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44|UniPathway: UPA00157 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 Pfam PF00561 alpha/beta hydrolase fold 14 151 1.3E-9 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 Pfam PF02627 Carboxymuconolactone decarboxylase family 288 370 5.7E-23 T 14-09-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 PRINTS PR00111 Alpha/beta hydrolase fold signature 196 210 1.9E-8 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 1.9E-8 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 PRINTS PR00111 Alpha/beta hydrolase fold signature 83 96 1.9E-8 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 PRINTS PR00111 Alpha/beta hydrolase fold signature 39 54 1.9E-8 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 Gene3D G3DSA:1.20.1290.10 255 377 2.0E-27 T 14-09-2016 IPR029032 AhpD-like PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 2 249 2.9E-79 T 14-09-2016 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185|UniPathway: UPA00157 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 PANTHER PTHR33570 129 380 6.5E-58 T 14-09-2016 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 PANTHER PTHR33570:SF2 129 380 6.5E-58 T 14-09-2016 PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 SUPERFAMILY SSF53474 3 250 4.23E-56 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 Gene3D G3DSA:3.40.50.1820 3 250 2.8E-56 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS14410 c6710a66b4db1eec2bc6c899e9ddc822 380 SUPERFAMILY SSF69118 257 375 1.2E-35 T 14-09-2016 IPR029032 AhpD-like PAJ_RS03885 143556e9fed479666e9344968d0a52d0 92 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 14-09-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 PAJ_RS03885 143556e9fed479666e9344968d0a52d0 92 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 14-09-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 PAJ_RS03885 143556e9fed479666e9344968d0a52d0 92 Hamap MF_01450 Acylphosphatase [yccX]. 2 92 26.792 T 14-09-2016 IPR028627 Acylphosphatase, bacteria GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 PAJ_RS03885 143556e9fed479666e9344968d0a52d0 92 PANTHER PTHR10029 1 85 1.8E-27 T 14-09-2016 PAJ_RS03885 143556e9fed479666e9344968d0a52d0 92 Gene3D G3DSA:3.30.70.100 4 89 4.6E-29 T 14-09-2016 PAJ_RS03885 143556e9fed479666e9344968d0a52d0 92 Pfam PF00708 Acylphosphatase 5 90 1.7E-23 T 14-09-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 PAJ_RS03885 143556e9fed479666e9344968d0a52d0 92 SUPERFAMILY SSF54975 3 86 9.81E-27 T 14-09-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 PAJ_RS17475 bc3231f96afd5e4db89328852b2569c5 211 SUPERFAMILY SSF52540 17 199 1.53E-33 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17475 bc3231f96afd5e4db89328852b2569c5 211 Pfam PF01926 50S ribosome-binding GTPase 28 146 1.3E-20 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS17475 bc3231f96afd5e4db89328852b2569c5 211 Gene3D G3DSA:3.40.50.300 10 198 6.4E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17475 bc3231f96afd5e4db89328852b2569c5 211 PANTHER PTHR11649 11 199 1.7E-56 T 14-09-2016 PAJ_RS17475 bc3231f96afd5e4db89328852b2569c5 211 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 10 193 1.5E-74 T 14-09-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 PAJ_RS17475 bc3231f96afd5e4db89328852b2569c5 211 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 14 197 28.109 T 14-09-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 PANTHER PTHR10799 150 354 4.9E-260 T 14-09-2016 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 PANTHER PTHR10799 892 968 4.9E-260 T 14-09-2016 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 SMART SM00487 150 346 7.6E-21 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 PANTHER PTHR10799:SF610 892 968 4.9E-260 T 14-09-2016 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 PANTHER PTHR10799:SF610 1 9 4.9E-260 T 14-09-2016 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 Gene3D G3DSA:3.40.50.300 484 616 2.9E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 PANTHER PTHR10799:SF610 150 354 4.9E-260 T 14-09-2016 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 PANTHER PTHR10799:SF610 799 840 4.9E-260 T 14-09-2016 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 PANTHER PTHR10799 799 840 4.9E-260 T 14-09-2016 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 PANTHER PTHR10799 400 694 4.9E-260 T 14-09-2016 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 PANTHER PTHR10799:SF610 400 694 4.9E-260 T 14-09-2016 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 Gene3D G3DSA:3.40.50.300 159 319 2.7E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 966 71.477 T 14-09-2016 IPR023949 RNA polymerase-associated protein RapA GO:0006355 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 Pfam PF12137 RNA polymerase recycling family C-terminal 605 965 3.4E-157 T 14-09-2016 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 Pfam PF00176 SNF2 family N-terminal domain 174 442 1.5E-20 T 14-09-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 PANTHER PTHR10799 1 9 4.9E-260 T 14-09-2016 PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 SUPERFAMILY SSF52540 480 652 2.37E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 SUPERFAMILY SSF52540 273 337 2.37E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 SMART SM00490 517 601 1.7E-18 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 Pfam PF00271 Helicase conserved C-terminal domain 493 601 4.5E-15 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS00175 dcd7202e962d5141594085e1f7b660e7 968 SUPERFAMILY SSF52540 127 353 3.38E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 PANTHER PTHR12124:SF42 1 358 5.1E-82 T 14-09-2016 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 SUPERFAMILY SSF47819 297 370 3.01E-19 T 14-09-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 Hamap MF_01899 Ribonuclease D [rnd]. 3 371 45.07 T 14-09-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 SUPERFAMILY SSF47819 195 299 3.18E-27 T 14-09-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 Gene3D G3DSA:3.30.420.10 2 182 2.4E-13 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 SMART SM00341 210 290 3.4E-13 T 14-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 SMART SM00474 3 171 1.4E-45 T 14-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 Pfam PF00570 HRDC domain 213 277 3.4E-12 T 14-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 TIGRFAM TIGR01388 rnd: ribonuclease D 5 363 5.8E-139 T 14-09-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 Pfam PF01612 3'-5' exonuclease 4 171 5.3E-42 T 14-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 SUPERFAMILY SSF53098 2 210 1.52E-65 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS08040 acbeebfac258e018e05425fd4a9ee7b9 373 PANTHER PTHR12124 1 358 5.1E-82 T 14-09-2016 PAJ_RS12690 772d8dc4b11be606f9c34bad542e3704 182 PANTHER PTHR33692 1 180 3.9E-61 T 14-09-2016 PAJ_RS12690 772d8dc4b11be606f9c34bad542e3704 182 SUPERFAMILY SSF50447 13 99 1.06E-23 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain PAJ_RS12690 772d8dc4b11be606f9c34bad542e3704 182 Pfam PF01782 RimM N-terminal domain 16 96 7.6E-27 T 14-09-2016 IPR002676 RimM protein GO:0006364 PAJ_RS12690 772d8dc4b11be606f9c34bad542e3704 182 Gene3D G3DSA:2.40.30.60 7 100 1.3E-35 T 14-09-2016 IPR002676 RimM protein GO:0006364 PAJ_RS12690 772d8dc4b11be606f9c34bad542e3704 182 Gene3D G3DSA:2.30.30.240 106 182 4.3E-30 T 14-09-2016 PAJ_RS12690 772d8dc4b11be606f9c34bad542e3704 182 PANTHER PTHR33692:SF1 1 180 3.9E-61 T 14-09-2016 PAJ_RS12690 772d8dc4b11be606f9c34bad542e3704 182 SUPERFAMILY SSF50346 106 182 2.35E-20 T 14-09-2016 IPR011033 PRC-barrel-like PAJ_RS12690 772d8dc4b11be606f9c34bad542e3704 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 13 182 24.627 T 14-09-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 PAJ_RS12690 772d8dc4b11be606f9c34bad542e3704 182 Pfam PF05239 PRC-barrel domain 104 167 3.0E-8 T 14-09-2016 IPR027275 PRC-barrel domain PAJ_RS12690 772d8dc4b11be606f9c34bad542e3704 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 14 182 2.6E-60 T 14-09-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 PAJ_RS02425 87a3fc784653d073bb7193617e88b48b 87 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 1 87 26.206 T 14-09-2016 IPR007454 Uncharacterised protein family UPF0250 PAJ_RS02425 87a3fc784653d073bb7193617e88b48b 87 Pfam PF04359 Protein of unknown function (DUF493) 7 87 5.7E-29 T 14-09-2016 IPR007454 Uncharacterised protein family UPF0250 PAJ_RS02425 87a3fc784653d073bb7193617e88b48b 87 PANTHER PTHR38036:SF1 1 87 1.1E-40 T 14-09-2016 PAJ_RS02425 87a3fc784653d073bb7193617e88b48b 87 Gene3D G3DSA:3.30.70.1460 1 87 1.1E-36 T 14-09-2016 IPR027471 YbeD-like domain PAJ_RS02425 87a3fc784653d073bb7193617e88b48b 87 PANTHER PTHR38036 1 87 1.1E-40 T 14-09-2016 PAJ_RS02425 87a3fc784653d073bb7193617e88b48b 87 SUPERFAMILY SSF117991 1 87 3.4E-31 T 14-09-2016 IPR027471 YbeD-like domain PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 14-09-2016 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 Gene3D G3DSA:1.20.210.10 40 589 2.4E-188 T 14-09-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 14-09-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 503 3.3E-135 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PANTHER PTHR10422:SF26 33 614 0.0 T 14-09-2016 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 SUPERFAMILY SSF81442 43 560 3.53E-177 T 14-09-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 1.1E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS01685 d1bba386282d2939f0b6bc6667f52f4b 660 PANTHER PTHR10422 33 614 0.0 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PAJ_RS15615 7d39dcecf79130cb239ff161faad4297 392 PANTHER PTHR30085 250 392 2.2E-164 T 14-09-2016 PAJ_RS15615 7d39dcecf79130cb239ff161faad4297 392 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 218 385 1.0E-14 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS15615 7d39dcecf79130cb239ff161faad4297 392 PANTHER PTHR30085:SF1 2 171 2.2E-164 T 14-09-2016 PAJ_RS15615 7d39dcecf79130cb239ff161faad4297 392 PANTHER PTHR30085:SF1 250 392 2.2E-164 T 14-09-2016 PAJ_RS15615 7d39dcecf79130cb239ff161faad4297 392 PANTHER PTHR30085 2 171 2.2E-164 T 14-09-2016 PAJ_RS15615 7d39dcecf79130cb239ff161faad4297 392 SUPERFAMILY SSF161098 82 153 2.35E-13 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS15615 7d39dcecf79130cb239ff161faad4297 392 SUPERFAMILY SSF161098 174 373 7.06E-28 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS15615 7d39dcecf79130cb239ff161faad4297 392 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 82 146 5.1E-17 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS15615 7d39dcecf79130cb239ff161faad4297 392 Gene3D G3DSA:1.10.3720.10 81 152 1.3E-47 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS15615 7d39dcecf79130cb239ff161faad4297 392 Gene3D G3DSA:1.10.3720.10 258 387 1.3E-47 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07315 f3e2089ad6dea2649c74420fad941758 446 SUPERFAMILY SSF103473 13 435 7.59E-79 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS07315 f3e2089ad6dea2649c74420fad941758 446 Gene3D G3DSA:1.20.1250.20 23 204 2.4E-39 T 14-09-2016 PAJ_RS07315 f3e2089ad6dea2649c74420fad941758 446 PANTHER PTHR24064:SF234 7 434 2.6E-139 T 14-09-2016 PAJ_RS07315 f3e2089ad6dea2649c74420fad941758 446 PANTHER PTHR24064 7 434 2.6E-139 T 14-09-2016 PAJ_RS07315 f3e2089ad6dea2649c74420fad941758 446 Pfam PF07690 Major Facilitator Superfamily 30 400 9.2E-49 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS07315 f3e2089ad6dea2649c74420fad941758 446 Gene3D G3DSA:1.20.1250.20 262 433 2.4E-23 T 14-09-2016 PAJ_RS07315 f3e2089ad6dea2649c74420fad941758 446 ProSitePatterns PS00216 Sugar transport proteins signature 1. 79 95 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS07315 f3e2089ad6dea2649c74420fad941758 446 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS16515 1f7601310678e93d8f61287273847b35 288 Gene3D G3DSA:1.10.10.10 4 76 2.4E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16515 1f7601310678e93d8f61287273847b35 288 SUPERFAMILY SSF46689 7 76 1.97E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS16515 1f7601310678e93d8f61287273847b35 288 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 71 7.5E-7 T 14-09-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 Gene3D G3DSA:3.30.565.10 521 693 1.0E-44 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 Pfam PF09456 RcsC Alpha-Beta-Loop (ABL) 709 798 3.3E-30 T 14-09-2016 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal GO:0000160|GO:0004673|GO:0004871|GO:0005524|GO:0005886|GO:0006355|GO:0016021|GO:0018106 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 Hamap MF_00979 Sensor histidine kinase RcsC [rcsC]. 24 941 25.702 T 14-09-2016 IPR030856 Sensor histidine kinase RcsC GO:0000155|GO:0000160|GO:0016021|GO:0042710 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 Gene3D G3DSA:3.40.50.2300 823 942 1.2E-38 T 14-09-2016 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 SMART SM00448 825 936 7.5E-37 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 SUPERFAMILY SSF52172 825 945 1.42E-37 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 Gene3D G3DSA:3.30.450.20 428 472 2.5E-6 T 14-09-2016 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 PANTHER PTHR24423 355 785 3.4E-223 T 14-09-2016 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 PANTHER PTHR24423 824 947 3.4E-223 T 14-09-2016 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 PANTHER PTHR24423:SF382 355 785 3.4E-223 T 14-09-2016 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 PANTHER PTHR24423:SF382 824 947 3.4E-223 T 14-09-2016 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 PANTHER PTHR24423:SF382 28 56 3.4E-223 T 14-09-2016 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 Pfam PF00512 His Kinase A (phospho-acceptor) domain 469 533 2.8E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 581 689 2.3E-24 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 SMART SM00388 469 534 5.1E-18 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 SUPERFAMILY SSF52172 702 807 3.88E-29 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 SUPERFAMILY SSF47384 452 535 5.3E-19 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 Pfam PF00072 Response regulator receiver domain 827 935 1.9E-30 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 SMART SM00387 581 692 5.0E-35 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 PRINTS PR00344 Bacterial sensor protein C-terminal signature 617 631 3.4E-16 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 PRINTS PR00344 Bacterial sensor protein C-terminal signature 635 645 3.4E-16 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 PRINTS PR00344 Bacterial sensor protein C-terminal signature 676 689 3.4E-16 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 670 3.4E-16 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 SUPERFAMILY SSF55874 523 692 4.58E-47 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 PANTHER PTHR24423 28 56 3.4E-223 T 14-09-2016 PAJ_RS10515 e8fb573fecbef91d9fa62d3374cee869 949 Gene3D G3DSA:1.10.287.130 473 520 1.2E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS00525 cf3af1332d8dea349124033763e1f642 427 PANTHER PTHR11808 13 427 7.1E-161 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS00525 cf3af1332d8dea349124033763e1f642 427 Gene3D G3DSA:3.40.640.10 17 289 1.7E-73 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS00525 cf3af1332d8dea349124033763e1f642 427 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 19 425 2.7E-97 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS00525 cf3af1332d8dea349124033763e1f642 427 SUPERFAMILY SSF53383 66 426 4.95E-81 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS00525 cf3af1332d8dea349124033763e1f642 427 PANTHER PTHR11808:SF49 13 427 7.1E-161 T 14-09-2016 PAJ_RS00525 cf3af1332d8dea349124033763e1f642 427 Gene3D G3DSA:3.90.1150.10 290 426 3.7E-38 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS00525 cf3af1332d8dea349124033763e1f642 427 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 233 247 - T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS00525 cf3af1332d8dea349124033763e1f642 427 PIRSF PIRSF001434 5 427 8.3E-116 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 4 328 1.4E-185 T 14-09-2016 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72|UniPathway: UPA00244 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 PANTHER PTHR10836:SF47 1 339 6.5E-239 T 14-09-2016 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 Gene3D G3DSA:3.30.360.10 164 318 2.5E-61 T 14-09-2016 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 SUPERFAMILY SSF55347 155 317 1.52E-57 T 14-09-2016 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 Gene3D G3DSA:3.40.50.720 1 163 9.1E-64 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 PANTHER PTHR10836 1 339 6.5E-239 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 6.1E-31 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 6.1E-31 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 6.1E-31 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 6.1E-31 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 6.1E-31 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 2 337 64.658 T 14-09-2016 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72|UniPathway: UPA00244 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 14-09-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 SMART SM00846 3 155 1.7E-75 T 14-09-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 5.7E-54 T 14-09-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 SUPERFAMILY SSF51735 1 180 3.57E-54 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 155 6.9E-50 T 14-09-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS13405 401aeaf164f3673c8fa9044fdcb38414 339 PIRSF PIRSF000149 1 337 5.8E-129 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PAJ_RS09840 e8a6b34a7a4fbf0c075a47fc1e11d40b 265 SMART SM00062 32 260 1.1E-75 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS09840 e8a6b34a7a4fbf0c075a47fc1e11d40b 265 Gene3D G3DSA:3.40.190.10 119 215 3.1E-29 T 14-09-2016 PAJ_RS09840 e8a6b34a7a4fbf0c075a47fc1e11d40b 265 PANTHER PTHR18966:SF237 30 263 9.4E-72 T 14-09-2016 PAJ_RS09840 e8a6b34a7a4fbf0c075a47fc1e11d40b 265 PANTHER PTHR18966 30 263 9.4E-72 T 14-09-2016 PAJ_RS09840 e8a6b34a7a4fbf0c075a47fc1e11d40b 265 Gene3D G3DSA:3.40.190.10 32 118 1.2E-41 T 14-09-2016 PAJ_RS09840 e8a6b34a7a4fbf0c075a47fc1e11d40b 265 Gene3D G3DSA:3.40.190.10 219 262 1.2E-41 T 14-09-2016 PAJ_RS09840 e8a6b34a7a4fbf0c075a47fc1e11d40b 265 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 258 6.9E-62 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS09840 e8a6b34a7a4fbf0c075a47fc1e11d40b 265 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 55 68 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS09840 e8a6b34a7a4fbf0c075a47fc1e11d40b 265 SUPERFAMILY SSF53850 11 260 3.8E-66 T 14-09-2016 PAJ_RS09840 e8a6b34a7a4fbf0c075a47fc1e11d40b 265 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 10 257 7.2E-86 T 14-09-2016 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 655 677 - T 14-09-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 ProSitePatterns PS00324 Aspartokinase signature. 15 23 - T 14-09-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 SUPERFAMILY SSF55347 609 792 3.6E-47 T 14-09-2016 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 Gene3D G3DSA:3.30.360.10 630 787 3.3E-52 T 14-09-2016 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 Pfam PF00696 Amino acid kinase family 13 285 6.8E-43 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 466 601 2.1E-24 T 14-09-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 PANTHER PTHR21499 387 811 2.2E-240 T 14-09-2016 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 PANTHER PTHR21499:SF29 387 811 2.2E-240 T 14-09-2016 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 PIRSF PIRSF000727 13 811 2.8E-288 T 14-09-2016 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00050|UniPathway: UPA00051|UniPathway: UPA00051 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 Pfam PF00742 Homoserine dehydrogenase 609 804 8.2E-44 T 14-09-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 SUPERFAMILY SSF53633 13 300 1.36E-57 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 Gene3D G3DSA:3.40.50.720 458 629 4.7E-53 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 SUPERFAMILY SSF51735 458 631 5.42E-32 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 Gene3D G3DSA:3.40.1160.10 12 60 1.1E-46 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 Gene3D G3DSA:3.40.1160.10 107 300 1.1E-46 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS17025 5a2244ed752dff7957f6e5089eda82af 811 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 16 453 1.5E-64 T 14-09-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS05285 d431d9daa2fdf734db35e5605bf80972 185 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 172 1.0E-18 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS05285 d431d9daa2fdf734db35e5605bf80972 185 SUPERFAMILY SSF88946 21 104 2.79E-13 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS05285 d431d9daa2fdf734db35e5605bf80972 185 Pfam PF08281 Sigma-70, region 4 118 170 1.4E-11 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS05285 d431d9daa2fdf734db35e5605bf80972 185 Gene3D G3DSA:1.10.1740.10 19 90 4.5E-15 T 14-09-2016 PAJ_RS05285 d431d9daa2fdf734db35e5605bf80972 185 Pfam PF04542 Sigma-70 region 2 25 89 2.5E-7 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS05285 d431d9daa2fdf734db35e5605bf80972 185 SUPERFAMILY SSF88659 114 173 6.76E-13 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS05285 d431d9daa2fdf734db35e5605bf80972 185 PANTHER PTHR30173:SF6 21 182 2.8E-27 T 14-09-2016 PAJ_RS05285 d431d9daa2fdf734db35e5605bf80972 185 Gene3D G3DSA:1.10.10.10 116 174 1.1E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05285 d431d9daa2fdf734db35e5605bf80972 185 PANTHER PTHR30173 21 182 2.8E-27 T 14-09-2016 PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 1 390 5.4E-120 T 14-09-2016 IPR013355 Type IV pilus secretin PilQ GO:0009297|GO:0009306 PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 SMART SM00965 21 69 7.4E-4 T 14-09-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 335 368 - T 14-09-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 PRINTS PR00811 Bacterial general secretion pathway protein D signature 377 391 3.9E-13 T 14-09-2016 IPR001775 GspD/PilQ family PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 PRINTS PR00811 Bacterial general secretion pathway protein D signature 354 372 3.9E-13 T 14-09-2016 IPR001775 GspD/PilQ family PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 PRINTS PR00811 Bacterial general secretion pathway protein D signature 226 250 3.9E-13 T 14-09-2016 IPR001775 GspD/PilQ family PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 PRINTS PR01032 Gene IV protein signature 210 233 2.9E-8 T 14-09-2016 PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 PRINTS PR01032 Gene IV protein signature 317 345 2.9E-8 T 14-09-2016 PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 PRINTS PR01032 Gene IV protein signature 251 274 2.9E-8 T 14-09-2016 PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 PRINTS PR01032 Gene IV protein signature 370 392 2.9E-8 T 14-09-2016 PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 Pfam PF00263 Bacterial type II and III secretion system protein 230 390 1.7E-45 T 14-09-2016 IPR004846 Type II/III secretion system GO:0009306 PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 PANTHER PTHR30604 1 398 1.1E-100 T 14-09-2016 PAJ_RS16080 e6241dda1d2e81acb25e03fdc8a7eb6b 404 Pfam PF03958 Bacterial type II/III secretion system short domain 95 159 1.3E-9 T 14-09-2016 IPR005644 NolW-like PAJ_RS11185 d27b1d3124ef088cc418106571d630e4 321 Gene3D G3DSA:3.40.367.20 100 299 8.6E-77 T 14-09-2016 PAJ_RS11185 d27b1d3124ef088cc418106571d630e4 321 PANTHER PTHR30514 1 320 8.9E-121 T 14-09-2016 PAJ_RS11185 d27b1d3124ef088cc418106571d630e4 321 TIGRFAM TIGR00749 glk: glucokinase 6 310 8.9E-141 T 14-09-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 PAJ_RS11185 d27b1d3124ef088cc418106571d630e4 321 SUPERFAMILY SSF53067 4 318 6.41E-65 T 14-09-2016 PAJ_RS11185 d27b1d3124ef088cc418106571d630e4 321 Hamap MF_00524 Glucokinase [glk]. 2 316 39.733 T 14-09-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 PAJ_RS11185 d27b1d3124ef088cc418106571d630e4 321 Pfam PF02685 Glucokinase 6 315 8.9E-125 T 14-09-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 PAJ_RS11185 d27b1d3124ef088cc418106571d630e4 321 PANTHER PTHR30514:SF0 1 320 8.9E-121 T 14-09-2016 PAJ_RS11185 d27b1d3124ef088cc418106571d630e4 321 Gene3D G3DSA:3.30.420.40 8 70 2.8E-4 T 14-09-2016 PAJ_RS18535 688ca82bd93215f36aace8eb88b1cc9b 210 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 158 18.424 T 14-09-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 PAJ_RS18535 688ca82bd93215f36aace8eb88b1cc9b 210 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 1.3E-28 T 14-09-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 PAJ_RS18535 688ca82bd93215f36aace8eb88b1cc9b 210 PANTHER PTHR33162 2 197 1.3E-51 T 14-09-2016 PAJ_RS18535 688ca82bd93215f36aace8eb88b1cc9b 210 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.8E-30 T 14-09-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 PAJ_RS18535 688ca82bd93215f36aace8eb88b1cc9b 210 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.8E-30 T 14-09-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 PAJ_RS18535 688ca82bd93215f36aace8eb88b1cc9b 210 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.8E-30 T 14-09-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 PAJ_RS18535 688ca82bd93215f36aace8eb88b1cc9b 210 PANTHER PTHR33162:SF4 2 197 1.3E-51 T 14-09-2016 PAJ_RS05440 bf854e877e698f1e4b233413f79565fc 83 Pfam PF00239 Resolvase, N terminal domain 6 69 3.7E-11 T 14-09-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PAJ_RS05440 bf854e877e698f1e4b233413f79565fc 83 SUPERFAMILY SSF53041 3 70 9.94E-16 T 14-09-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PAJ_RS05440 bf854e877e698f1e4b233413f79565fc 83 Gene3D G3DSA:3.40.50.1390 4 69 3.0E-16 T 14-09-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 SUPERFAMILY SSF50331 236 364 1.89E-31 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 Gene3D G3DSA:2.40.50.100 239 287 2.8E-21 T 14-09-2016 PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 SUPERFAMILY SSF52540 4 243 8.06E-86 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 Pfam PF00005 ABC transporter 20 161 8.1E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 PANTHER PTHR24220:SF572 5 343 2.8E-188 T 14-09-2016 PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 Gene3D G3DSA:2.40.50.140 288 345 4.2E-26 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 Gene3D G3DSA:3.40.50.300 4 236 2.6E-76 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 Pfam PF08402 TOBE domain 281 353 1.6E-10 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 PANTHER PTHR24220 5 343 2.8E-188 T 14-09-2016 PAJ_RS06850 6e6bb0d3d3a5018dd01a10235158f749 369 SMART SM00382 28 211 3.9E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS15170 8c459f6a40b365561c1ca000c4c0169c 685 Pfam PF01055 Glycosyl hydrolases family 31 230 665 1.3E-74 T 14-09-2016 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 PAJ_RS15170 8c459f6a40b365561c1ca000c4c0169c 685 PANTHER PTHR22762:SF90 111 667 2.3E-275 T 14-09-2016 PAJ_RS15170 8c459f6a40b365561c1ca000c4c0169c 685 SUPERFAMILY SSF51011 585 663 3.81E-21 T 14-09-2016 PAJ_RS15170 8c459f6a40b365561c1ca000c4c0169c 685 SUPERFAMILY SSF51445 236 583 1.64E-50 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS15170 8c459f6a40b365561c1ca000c4c0169c 685 PANTHER PTHR22762 111 667 2.3E-275 T 14-09-2016 PAJ_RS15170 8c459f6a40b365561c1ca000c4c0169c 685 SUPERFAMILY SSF74650 32 225 1.54E-18 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 27 50 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 296 313 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 236 257 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 258 277 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 148 171 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 192 213 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 52 72 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 5 25 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 214 235 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 172 190 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PRINTS PR01002 Flagellar protein FlgJ signature 278 296 7.9E-103 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 11 295 5.3E-109 T 14-09-2016 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PANTHER PTHR33308:SF3 15 294 7.6E-42 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 SMART SM00047 143 307 5.3E-55 T 14-09-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 160 296 1.3E-20 T 14-09-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 PANTHER PTHR33308 15 294 7.6E-42 T 14-09-2016 PAJ_RS04490 d73756dc939e467ca33fa8555d2f636a 314 Pfam PF10135 Rod binding protein 49 95 1.7E-15 T 14-09-2016 IPR019301 Flagellar protein FlgJ, N-terminal PAJ_RS06520 7fe9c82a13675b9fead8817694fc2458 391 TIGRFAM TIGR00843 benE: benzoate transporter 10 386 1.4E-124 T 14-09-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PAJ_RS06520 7fe9c82a13675b9fead8817694fc2458 391 Pfam PF03594 Benzoate membrane transport protein 11 385 1.2E-125 T 14-09-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PAJ_RS06520 7fe9c82a13675b9fead8817694fc2458 391 PANTHER PTHR30199:SF0 12 388 8.4E-141 T 14-09-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PAJ_RS06520 7fe9c82a13675b9fead8817694fc2458 391 PANTHER PTHR30199 12 388 8.4E-141 T 14-09-2016 PAJ_RS09400 6c96413a5770f8677707d7da1f54cd6d 178 PANTHER PTHR23117:SF8 1 176 6.5E-67 T 14-09-2016 PAJ_RS09400 6c96413a5770f8677707d7da1f54cd6d 178 SMART SM00072 1 178 5.7E-11 T 14-09-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PAJ_RS09400 6c96413a5770f8677707d7da1f54cd6d 178 SUPERFAMILY SSF52540 1 176 2.67E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09400 6c96413a5770f8677707d7da1f54cd6d 178 Pfam PF00625 Guanylate kinase 2 174 1.7E-7 T 14-09-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PAJ_RS09400 6c96413a5770f8677707d7da1f54cd6d 178 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 3 175 6.7E-64 T 14-09-2016 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 PAJ_RS09400 6c96413a5770f8677707d7da1f54cd6d 178 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 1 175 34.746 T 14-09-2016 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 PAJ_RS09400 6c96413a5770f8677707d7da1f54cd6d 178 PANTHER PTHR23117 1 176 6.5E-67 T 14-09-2016 PAJ_RS09400 6c96413a5770f8677707d7da1f54cd6d 178 Gene3D G3DSA:3.40.50.300 3 24 1.0E-15 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09400 6c96413a5770f8677707d7da1f54cd6d 178 Gene3D G3DSA:3.40.50.300 72 149 1.0E-15 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS14180 267df7de1b5d45b86760b7c74cd0ed04 257 Gene3D G3DSA:3.20.20.140 1 256 9.4E-79 T 14-09-2016 PAJ_RS14180 267df7de1b5d45b86760b7c74cd0ed04 257 PANTHER PTHR10060 1 257 1.7E-86 T 14-09-2016 IPR001130 TatD family GO:0016788 PAJ_RS14180 267df7de1b5d45b86760b7c74cd0ed04 257 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 14-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PAJ_RS14180 267df7de1b5d45b86760b7c74cd0ed04 257 PIRSF PIRSF005902 1 257 6.4E-70 T 14-09-2016 IPR001130 TatD family GO:0016788 PAJ_RS14180 267df7de1b5d45b86760b7c74cd0ed04 257 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 127 137 - T 14-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PAJ_RS14180 267df7de1b5d45b86760b7c74cd0ed04 257 Pfam PF01026 TatD related DNase 4 254 3.2E-65 T 14-09-2016 IPR001130 TatD family GO:0016788 PAJ_RS14180 267df7de1b5d45b86760b7c74cd0ed04 257 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 14-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PAJ_RS14180 267df7de1b5d45b86760b7c74cd0ed04 257 SUPERFAMILY SSF51556 3 256 1.95E-76 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS05145 68db3e86b43bbebf39755ed471aaa225 386 PANTHER PTHR31686 23 386 5.5E-127 T 14-09-2016 PAJ_RS05145 68db3e86b43bbebf39755ed471aaa225 386 PANTHER PTHR31686:SF1 23 386 5.5E-127 T 14-09-2016 PAJ_RS05145 68db3e86b43bbebf39755ed471aaa225 386 Pfam PF03595 Voltage-dependent anion channel 27 365 4.8E-80 T 14-09-2016 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 PAJ_RS13790 68db3e86b43bbebf39755ed471aaa225 386 PANTHER PTHR31686 23 386 5.5E-127 T 14-09-2016 PAJ_RS13790 68db3e86b43bbebf39755ed471aaa225 386 PANTHER PTHR31686:SF1 23 386 5.5E-127 T 14-09-2016 PAJ_RS13790 68db3e86b43bbebf39755ed471aaa225 386 Pfam PF03595 Voltage-dependent anion channel 27 365 4.8E-80 T 14-09-2016 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 PAJ_RS03360 2ab8bd8b197b1a066f17bb0a8482762e 308 Gene3D G3DSA:1.10.3720.10 86 300 2.4E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03360 2ab8bd8b197b1a066f17bb0a8482762e 308 PANTHER PTHR30465:SF59 1 305 2.3E-186 T 14-09-2016 PAJ_RS03360 2ab8bd8b197b1a066f17bb0a8482762e 308 PANTHER PTHR30465 1 305 2.3E-186 T 14-09-2016 PAJ_RS03360 2ab8bd8b197b1a066f17bb0a8482762e 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 6.0E-41 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03360 2ab8bd8b197b1a066f17bb0a8482762e 308 SUPERFAMILY SSF161098 90 289 5.36E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS19755 d811f3bde67c2517a629d88eca35a788 184 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 11 168 26.459 T 14-09-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 PAJ_RS19755 d811f3bde67c2517a629d88eca35a788 184 PANTHER PTHR36504 1 184 1.8E-49 T 14-09-2016 PAJ_RS19755 d811f3bde67c2517a629d88eca35a788 184 Gene3D G3DSA:2.60.450.10 28 164 4.4E-42 T 14-09-2016 PAJ_RS19755 d811f3bde67c2517a629d88eca35a788 184 Pfam PF03968 OstA-like protein 37 149 4.7E-31 T 14-09-2016 IPR005653 Organic solvent tolerance-like, N-terminal PAJ_RS19755 d811f3bde67c2517a629d88eca35a788 184 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 27 167 1.1E-49 T 14-09-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 PAJ_RS18985 d9a935338a8fc55618205e7f1d86cf26 354 Gene3D G3DSA:3.40.50.720 181 293 4.5E-24 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18985 d9a935338a8fc55618205e7f1d86cf26 354 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 179 207 - T 14-09-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PAJ_RS18985 d9a935338a8fc55618205e7f1d86cf26 354 PANTHER PTHR11695 16 354 2.0E-169 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS18985 d9a935338a8fc55618205e7f1d86cf26 354 Pfam PF00107 Zinc-binding dehydrogenase 186 307 1.0E-22 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS18985 d9a935338a8fc55618205e7f1d86cf26 354 SMART SM00829 9 343 3.7E-4 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS18985 d9a935338a8fc55618205e7f1d86cf26 354 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 144 2.0E-26 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS18985 d9a935338a8fc55618205e7f1d86cf26 354 Gene3D G3DSA:3.90.180.10 4 180 4.3E-62 T 14-09-2016 IPR011032 GroES-like PAJ_RS18985 d9a935338a8fc55618205e7f1d86cf26 354 SUPERFAMILY SSF50129 7 173 1.05E-49 T 14-09-2016 IPR011032 GroES-like PAJ_RS18985 d9a935338a8fc55618205e7f1d86cf26 354 SUPERFAMILY SSF51735 150 313 2.83E-42 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18985 d9a935338a8fc55618205e7f1d86cf26 354 PANTHER PTHR11695:SF582 16 354 2.0E-169 T 14-09-2016 PAJ_RS10195 ea8f29ce8c0f6954e12d9c0c8996aace 263 Pfam PF00005 ABC transporter 28 166 2.2E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10195 ea8f29ce8c0f6954e12d9c0c8996aace 263 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS10195 ea8f29ce8c0f6954e12d9c0c8996aace 263 Gene3D G3DSA:3.40.50.300 7 243 1.4E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10195 ea8f29ce8c0f6954e12d9c0c8996aace 263 PANTHER PTHR24220 7 242 1.7E-66 T 14-09-2016 PAJ_RS10195 ea8f29ce8c0f6954e12d9c0c8996aace 263 SMART SM00382 31 224 5.9E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10195 ea8f29ce8c0f6954e12d9c0c8996aace 263 SUPERFAMILY SSF52540 6 229 7.26E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 SUPERFAMILY SSF54211 8 203 3.19E-64 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PANTHER PTHR10457 8 381 2.2E-150 T 14-09-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 14-09-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PIRSF PIRSF000530 2 382 5.8E-123 T 14-09-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 Pfam PF08544 GHMP kinases C terminal 279 361 5.0E-12 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 SUPERFAMILY SSF55060 205 380 1.98E-49 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 14-09-2016 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 Gene3D G3DSA:3.30.70.890 208 380 6.9E-60 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 Pfam PF10509 Galactokinase galactose-binding signature 10 58 3.0E-23 T 14-09-2016 IPR019539 Galactokinase galactose-binding domain KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 Hamap MF_00246 Galactokinase [galK]. 25 381 44.351 T 14-09-2016 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PANTHER PTHR10457:SF6 8 381 2.2E-150 T 14-09-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PRINTS PR00473 Galactokinase signature 263 277 1.4E-30 T 14-09-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PRINTS PR00473 Galactokinase signature 27 45 1.4E-30 T 14-09-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PRINTS PR00473 Galactokinase signature 92 103 1.4E-30 T 14-09-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PRINTS PR00473 Galactokinase signature 112 130 1.4E-30 T 14-09-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 TIGRFAM TIGR00131 gal_kin: galactokinase 7 382 3.1E-160 T 14-09-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 Gene3D G3DSA:3.30.230.10 8 207 4.5E-80 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 Pfam PF00288 GHMP kinases N terminal domain 115 181 5.7E-13 T 14-09-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PRINTS PR00959 Mevalonate kinase family signature 25 49 1.1E-45 T 14-09-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PRINTS PR00959 Mevalonate kinase family signature 119 141 1.1E-45 T 14-09-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PRINTS PR00959 Mevalonate kinase family signature 328 345 1.1E-45 T 14-09-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02895 0457b34bf2757e0b92226368dee886f5 382 PRINTS PR00959 Mevalonate kinase family signature 162 181 1.1E-45 T 14-09-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS04515 95f6d4a35b3da93272026554a25f0882 195 PIRSF PIRSF006305 1 194 1.2E-42 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 PAJ_RS04515 95f6d4a35b3da93272026554a25f0882 195 SUPERFAMILY SSF52972 3 187 7.19E-59 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PAJ_RS04515 95f6d4a35b3da93272026554a25f0882 195 PANTHER PTHR11746 121 191 6.9E-33 T 14-09-2016 PAJ_RS04515 95f6d4a35b3da93272026554a25f0882 195 Pfam PF02545 Maf-like protein 5 187 4.2E-46 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 PAJ_RS04515 95f6d4a35b3da93272026554a25f0882 195 Gene3D G3DSA:3.90.950.10 3 191 7.2E-59 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PAJ_RS04515 95f6d4a35b3da93272026554a25f0882 195 Hamap MF_00528 Septum formation protein Maf [maf]. 4 192 28.624 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 PAJ_RS04515 95f6d4a35b3da93272026554a25f0882 195 PANTHER PTHR11746:SF102 121 191 6.9E-33 T 14-09-2016 PAJ_RS04515 95f6d4a35b3da93272026554a25f0882 195 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 186 3.0E-59 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 PAJ_RS00965 9f9e739b61465e4e535eca03a491de5f 144 PANTHER PTHR11803 27 138 9.8E-32 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family PAJ_RS00965 9f9e739b61465e4e535eca03a491de5f 144 Pfam PF01042 Endoribonuclease L-PSP 26 133 8.9E-21 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family PAJ_RS00965 9f9e739b61465e4e535eca03a491de5f 144 Gene3D G3DSA:3.30.1330.40 5 137 3.4E-40 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PAJ_RS00965 9f9e739b61465e4e535eca03a491de5f 144 SUPERFAMILY SSF55298 24 137 1.88E-31 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PAJ_RS02980 d0d6b86d3fbe6c6deed89134adbd9b9d 301 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 11 267 3.8E-95 T 14-09-2016 IPR010119 Gluconeogenesis factor PAJ_RS02980 d0d6b86d3fbe6c6deed89134adbd9b9d 301 SUPERFAMILY SSF142338 10 293 2.35E-81 T 14-09-2016 PAJ_RS02980 d0d6b86d3fbe6c6deed89134adbd9b9d 301 Gene3D G3DSA:3.40.50.10680 81 298 4.1E-51 T 14-09-2016 PAJ_RS02980 d0d6b86d3fbe6c6deed89134adbd9b9d 301 Hamap MF_00973 Gluconeogenesis factor. 7 299 31.075 T 14-09-2016 IPR010119 Gluconeogenesis factor PAJ_RS02980 d0d6b86d3fbe6c6deed89134adbd9b9d 301 Pfam PF01933 Uncharacterised protein family UPF0052 11 288 5.6E-76 T 14-09-2016 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 PAJ_RS02980 d0d6b86d3fbe6c6deed89134adbd9b9d 301 PANTHER PTHR30135 1 298 1.6E-106 T 14-09-2016 PAJ_RS19210 bf5e17f16425f0f66da244c9864d8243 386 SUPERFAMILY SSF55347 241 316 9.59E-24 T 14-09-2016 PAJ_RS19210 bf5e17f16425f0f66da244c9864d8243 386 SUPERFAMILY SSF55347 128 213 9.59E-24 T 14-09-2016 PAJ_RS19210 bf5e17f16425f0f66da244c9864d8243 386 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 141 205 6.1E-4 T 14-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 PAJ_RS19210 bf5e17f16425f0f66da244c9864d8243 386 Gene3D G3DSA:3.30.360.10 141 369 7.0E-30 T 14-09-2016 PAJ_RS19210 bf5e17f16425f0f66da244c9864d8243 386 SUPERFAMILY SSF51735 1 158 1.4E-27 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS19210 bf5e17f16425f0f66da244c9864d8243 386 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 116 1.5E-16 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 PAJ_RS19210 bf5e17f16425f0f66da244c9864d8243 386 PANTHER PTHR22604 1 209 3.3E-54 T 14-09-2016 PAJ_RS19210 bf5e17f16425f0f66da244c9864d8243 386 PANTHER PTHR22604 240 379 3.3E-54 T 14-09-2016 PAJ_RS19210 bf5e17f16425f0f66da244c9864d8243 386 Gene3D G3DSA:3.40.50.720 1 140 1.4E-28 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Gene3D G3DSA:1.20.120.160 916 1000 7.6E-17 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SMART SM00387 665 775 4.0E-34 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Gene3D G3DSA:3.40.190.10 397 452 1.3E-8 T 14-09-2016 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Gene3D G3DSA:3.40.190.10 46 136 2.7E-7 T 14-09-2016 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SUPERFAMILY SSF47384 545 619 4.51E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Gene3D G3DSA:3.40.190.10 294 396 1.2E-9 T 14-09-2016 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 56 262 3.9E-12 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 294 500 7.5E-25 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SUPERFAMILY SSF55874 607 779 3.54E-41 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SMART SM00062 290 504 1.9E-7 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SMART SM00062 49 266 0.0043 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SUPERFAMILY SSF53850 48 262 5.07E-17 T 14-09-2016 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Pfam PF00512 His Kinase A (phospho-acceptor) domain 557 617 6.9E-14 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SUPERFAMILY SSF47226 891 1002 1.7E-15 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Pfam PF00072 Response regulator receiver domain 795 902 5.1E-9 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SMART SM00388 557 618 2.2E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Pfam PF01627 Hpt domain 938 1003 3.4E-6 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Gene3D G3DSA:1.10.287.130 549 604 3.1E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SUPERFAMILY SSF53850 283 500 9.66E-31 T 14-09-2016 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 666 773 4.2E-28 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS02865 97eed175a40f689948e810c312203564 1024 PANTHER PTHR24423 536 938 2.7E-92 T 14-09-2016 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 PRINTS PR00344 Bacterial sensor protein C-terminal signature 718 728 1.8E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 PRINTS PR00344 Bacterial sensor protein C-terminal signature 735 753 1.8E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 PRINTS PR00344 Bacterial sensor protein C-terminal signature 759 772 1.8E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 PRINTS PR00344 Bacterial sensor protein C-terminal signature 700 714 1.8E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SUPERFAMILY SSF52172 791 910 1.31E-15 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS02865 97eed175a40f689948e810c312203564 1024 SMART SM00448 793 905 6.6E-8 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Gene3D G3DSA:3.30.565.10 605 774 6.1E-41 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS02865 97eed175a40f689948e810c312203564 1024 Gene3D G3DSA:3.40.50.2300 791 908 2.0E-15 T 14-09-2016 PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 Pfam PF01872 RibD C-terminal domain 147 360 4.2E-59 T 14-09-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 7 362 8.1E-151 T 14-09-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 SUPERFAMILY SSF53597 144 363 2.87E-58 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 PANTHER PTHR11079 3 212 4.4E-69 T 14-09-2016 PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 Gene3D G3DSA:3.40.140.10 2 128 1.3E-38 T 14-09-2016 PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 99 6.8E-22 T 14-09-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 PANTHER PTHR11079:SF10 3 212 4.4E-69 T 14-09-2016 PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 146 365 1.3E-75 T 14-09-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 SUPERFAMILY SSF53927 3 145 8.03E-51 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 Gene3D G3DSA:3.40.430.10 129 363 1.4E-68 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 50 88 - T 14-09-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 PAJ_RS01585 07ad88cb7465b7704b4ce5309d6a9571 367 PIRSF PIRSF006769 1 367 8.2E-135 T 14-09-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 PAJ_RS15540 a215be96000a71e0e88714b5f10265ef 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 9 154 1.5E-41 T 14-09-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 PAJ_RS15540 a215be96000a71e0e88714b5f10265ef 162 PANTHER PTHR37484 1 162 7.6E-72 T 14-09-2016 PAJ_RS15540 a215be96000a71e0e88714b5f10265ef 162 Pfam PF04093 rod shape-determining protein MreD 5 154 8.0E-43 T 14-09-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 PAJ_RS15540 a215be96000a71e0e88714b5f10265ef 162 PIRSF PIRSF018472 2 162 6.1E-57 T 14-09-2016 IPR026034 Cell shape-determining protein MreD, proteobacterial type PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 SUPERFAMILY SSF56176 180 356 1.36E-48 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 PANTHER PTHR11908:SF66 1 463 2.0E-118 T 14-09-2016 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 Gene3D G3DSA:3.30.465.10 245 357 1.3E-32 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 PANTHER PTHR11908 1 463 2.0E-118 T 14-09-2016 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 194 357 8.7E-46 T 14-09-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 Gene3D G3DSA:3.10.20.30 2 81 5.8E-23 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 SUPERFAMILY SSF55447 364 466 1.26E-31 T 14-09-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 2 464 3.2E-182 T 14-09-2016 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 366 465 6.7E-31 T 14-09-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 Gene3D G3DSA:3.30.43.10 195 243 8.5E-18 T 14-09-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 Pfam PF01799 [2Fe-2S] binding domain 81 153 5.0E-29 T 14-09-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 SUPERFAMILY SSF47741 92 193 2.09E-32 T 14-09-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 PIRSF PIRSF036557 1 476 1.6E-177 T 14-09-2016 IPR012175 Xanthine dehydrogenase, small subunit, bacteria PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 Gene3D G3DSA:1.10.150.120 82 175 7.1E-36 T 14-09-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 SMART SM01092 365 466 3.7E-29 T 14-09-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 Gene3D G3DSA:3.30.390.50 367 466 1.3E-34 T 14-09-2016 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PAJ_RS07185 947681cbd6f767a50c18034ea8674970 479 SUPERFAMILY SSF54292 2 86 2.35E-15 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PAJ_RS19395 86bccd3a2019fab78b45c938eb844dfd 731 Pfam PF00593 TonB dependent receptor 486 727 1.9E-17 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS19395 86bccd3a2019fab78b45c938eb844dfd 731 Pfam PF07715 TonB-dependent Receptor Plug Domain 44 145 4.0E-18 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS19395 86bccd3a2019fab78b45c938eb844dfd 731 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 714 731 - T 14-09-2016 IPR010917 TonB-dependent receptor, conserved site PAJ_RS19395 86bccd3a2019fab78b45c938eb844dfd 731 Gene3D G3DSA:2.170.130.10 22 148 6.9E-27 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS19395 86bccd3a2019fab78b45c938eb844dfd 731 PANTHER PTHR32552:SF30 10 731 9.5E-282 T 14-09-2016 PAJ_RS19395 86bccd3a2019fab78b45c938eb844dfd 731 PANTHER PTHR32552 10 731 9.5E-282 T 14-09-2016 PAJ_RS19395 86bccd3a2019fab78b45c938eb844dfd 731 SUPERFAMILY SSF56935 32 435 1.92E-94 T 14-09-2016 PAJ_RS19395 86bccd3a2019fab78b45c938eb844dfd 731 SUPERFAMILY SSF56935 466 729 1.92E-94 T 14-09-2016 PAJ_RS19395 86bccd3a2019fab78b45c938eb844dfd 731 Gene3D G3DSA:2.40.170.20 149 731 7.5E-77 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS19395 86bccd3a2019fab78b45c938eb844dfd 731 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 45 731 8.2E-152 T 14-09-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PAJ_RS08565 33bcb8c4506f48dd979436f02767fbb4 179 Pfam PF01625 Peptide methionine sulfoxide reductase 6 156 1.5E-61 T 14-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 PAJ_RS08565 33bcb8c4506f48dd979436f02767fbb4 179 SUPERFAMILY SSF55068 3 168 1.44E-69 T 14-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 PAJ_RS08565 33bcb8c4506f48dd979436f02767fbb4 179 PANTHER PTHR10173 1 157 5.3E-72 T 14-09-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 PAJ_RS08565 33bcb8c4506f48dd979436f02767fbb4 179 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 3 160 34.077 T 14-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 PAJ_RS08565 33bcb8c4506f48dd979436f02767fbb4 179 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 5 149 6.2E-56 T 14-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 PAJ_RS08565 33bcb8c4506f48dd979436f02767fbb4 179 PANTHER PTHR10173:SF34 1 157 5.3E-72 T 14-09-2016 PAJ_RS08565 33bcb8c4506f48dd979436f02767fbb4 179 Gene3D G3DSA:3.30.1060.10 3 150 5.7E-67 T 14-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 PAJ_RS09235 a11ea4a7433dd283496216592f46af4d 275 SUPERFAMILY SSF144059 4 267 2.35E-71 T 14-09-2016 PAJ_RS09235 a11ea4a7433dd283496216592f46af4d 275 PIRSF PIRSF029288 1 270 5.5E-76 T 14-09-2016 IPR009211 Predicted virulence protein, SciE type PAJ_RS09235 a11ea4a7433dd283496216592f46af4d 275 Pfam PF07024 ImpE protein 144 264 1.1E-44 T 14-09-2016 IPR009211 Predicted virulence protein, SciE type PAJ_RS07975 ceb954bbdfe5c85d2e275dba45d5d3f6 488 Pfam PF13727 CoA-binding domain 98 207 7.5E-7 T 14-09-2016 PAJ_RS07975 ceb954bbdfe5c85d2e275dba45d5d3f6 488 PANTHER PTHR30576:SF4 3 488 2.9E-175 T 14-09-2016 PAJ_RS07975 ceb954bbdfe5c85d2e275dba45d5d3f6 488 TIGRFAM TIGR03022 WbaP_sugtrans: undecaprenyl-phosphate galactose phosphotransferase WbaP 28 488 1.2E-166 T 14-09-2016 IPR017472 Undecaprenyl-phosphate galactose phosphotransferase, WbaP GO:0000271|GO:0005886|GO:0016021|GO:0016740 PAJ_RS07975 ceb954bbdfe5c85d2e275dba45d5d3f6 488 Pfam PF02397 Bacterial sugar transferase 292 482 3.5E-55 T 14-09-2016 IPR003362 Bacterial sugar transferase PAJ_RS07975 ceb954bbdfe5c85d2e275dba45d5d3f6 488 PANTHER PTHR30576 3 488 2.9E-175 T 14-09-2016 PAJ_RS07975 ceb954bbdfe5c85d2e275dba45d5d3f6 488 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 31 488 1.7E-117 T 14-09-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 317 332 - T 14-09-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 PANTHER PTHR11390 521 609 7.0E-193 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 PANTHER PTHR11390 1 503 7.0E-193 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 Gene3D G3DSA:2.70.20.10 218 252 1.4E-47 T 14-09-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 Gene3D G3DSA:2.70.20.10 369 488 1.4E-47 T 14-09-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 PANTHER PTHR11390:SF21 521 609 7.0E-193 T 14-09-2016 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 SMART SM00437 280 558 2.4E-96 T 14-09-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 614 5.3E-273 T 14-09-2016 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 PANTHER PTHR11390:SF21 1 503 7.0E-193 T 14-09-2016 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 Gene3D G3DSA:3.40.50.140 1 154 4.1E-46 T 14-09-2016 IPR006171 Toprim domain PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 Gene3D G3DSA:1.10.460.10 490 606 1.9E-51 T 14-09-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 Gene3D G3DSA:1.10.460.10 158 217 1.9E-51 T 14-09-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 SUPERFAMILY SSF56712 1 607 2.22E-185 T 14-09-2016 IPR023405 DNA topoisomerase, type IA, core domain PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 Hamap MF_00953 DNA topoisomerase 3 [topB]. 1 636 64.284 T 14-09-2016 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 SMART SM00493 1 124 9.6E-26 T 14-09-2016 IPR006171 Toprim domain PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 521 535 2.5E-25 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 402 418 2.5E-25 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 2.5E-25 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 193 211 2.5E-25 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 323 332 2.5E-25 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 Pfam PF01751 Toprim domain 3 135 1.2E-15 T 14-09-2016 IPR006171 Toprim domain PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 Pfam PF01131 DNA topoisomerase 158 593 7.6E-114 T 14-09-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 PAJ_RS07900 6c1fb360c7839199c6c7e7275fa1f61a 638 SMART SM00436 128 223 7.1E-37 T 14-09-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 PAJ_RS12275 d2a1bd7cfeac0558e5cb612ca0c46cfb 230 PANTHER PTHR33254:SF5 8 207 2.5E-50 T 14-09-2016 PAJ_RS12275 d2a1bd7cfeac0558e5cb612ca0c46cfb 230 PANTHER PTHR33254 8 207 2.5E-50 T 14-09-2016 PAJ_RS12275 d2a1bd7cfeac0558e5cb612ca0c46cfb 230 Gene3D G3DSA:3.50.30.40 26 184 4.0E-51 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PAJ_RS12275 d2a1bd7cfeac0558e5cb612ca0c46cfb 230 Pfam PF03737 Demethylmenaquinone methyltransferase 32 177 1.4E-41 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PAJ_RS12275 d2a1bd7cfeac0558e5cb612ca0c46cfb 230 SUPERFAMILY SSF89562 26 188 3.66E-47 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PAJ_RS16305 164134bc43de0480c0ec4fed76a42008 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 276 3.2E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16305 164134bc43de0480c0ec4fed76a42008 281 SUPERFAMILY SSF161098 4 278 1.68E-58 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16305 164134bc43de0480c0ec4fed76a42008 281 Gene3D G3DSA:1.10.3720.10 4 270 4.4E-52 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16305 164134bc43de0480c0ec4fed76a42008 281 PANTHER PTHR32243:SF31 1 279 1.8E-133 T 14-09-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 PAJ_RS16305 164134bc43de0480c0ec4fed76a42008 281 PANTHER PTHR32243 1 279 1.8E-133 T 14-09-2016 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 2 427 1.6E-213 T 14-09-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 PANTHER PTHR10283 3 427 1.2E-155 T 14-09-2016 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 PANTHER PTHR10283:SF21 3 427 1.2E-155 T 14-09-2016 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 Pfam PF02040 Arsenical pump membrane protein 3 423 6.6E-154 T 14-09-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 7.8E-117 T 14-09-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 7.8E-117 T 14-09-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 7.8E-117 T 14-09-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 7.8E-117 T 14-09-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 7.8E-117 T 14-09-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 7.8E-117 T 14-09-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 7.8E-117 T 14-09-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PAJ_RS06765 72ce0015d6f23e74f9b07c65dcbc7fb4 427 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 7.8E-117 T 14-09-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 PANTHER PTHR19211 3 555 0.0 T 14-09-2016 PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 SUPERFAMILY SSF52540 11 243 4.08E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 Pfam PF12848 ABC transporter 230 305 3.2E-11 T 14-09-2016 IPR032781 ABC-transporter extension domain PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 SUPERFAMILY SSF52540 303 530 7.33E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 PANTHER PTHR19211:SF7 3 555 0.0 T 14-09-2016 PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 Gene3D G3DSA:3.40.50.300 322 536 9.6E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 Pfam PF00005 ABC transporter 22 191 2.7E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 Pfam PF00005 ABC transporter 340 473 7.3E-24 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 Gene3D G3DSA:3.40.50.300 11 109 1.2E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 Gene3D G3DSA:3.40.50.300 141 285 1.2E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 SMART SM00382 31 236 2.3E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 SMART SM00382 348 521 2.9E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS20805 6161a2a715e80cf13da74f19130aa798 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 2.9E-292 T 14-09-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 PANTHER PTHR32432:SF4 1 413 1.9E-179 T 14-09-2016 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 SUPERFAMILY SSF53067 198 384 4.46E-46 T 14-09-2016 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 Gene3D G3DSA:3.90.640.10 235 297 4.6E-18 T 14-09-2016 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 Gene3D G3DSA:3.30.420.40 210 234 2.2E-29 T 14-09-2016 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 Gene3D G3DSA:3.30.420.40 298 359 2.2E-29 T 14-09-2016 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 Gene3D G3DSA:3.30.420.40 169 209 2.7E-5 T 14-09-2016 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 Pfam PF14450 Cell division protein FtsA 207 381 1.6E-23 T 14-09-2016 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 4.5E-30 T 14-09-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 SUPERFAMILY SSF53067 8 221 6.48E-62 T 14-09-2016 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 PANTHER PTHR32432 1 413 1.9E-179 T 14-09-2016 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 SMART SM00842 10 196 6.4E-96 T 14-09-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 PIRSF PIRSF003101 2 418 1.1E-151 T 14-09-2016 IPR020823 Cell division protein FtsA GO:0007049 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 Gene3D G3DSA:3.30.420.40 6 138 8.1E-33 T 14-09-2016 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 4.1E-160 T 14-09-2016 IPR020823 Cell division protein FtsA GO:0007049 PAJ_RS00345 b51afc3261f7ce8977b850b56251ac21 418 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 418 29.286 T 14-09-2016 IPR020823 Cell division protein FtsA GO:0007049 PAJ_RS18675 2a8a4dc7c197fd956253f91b75d42011 165 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 14-09-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS18675 2a8a4dc7c197fd956253f91b75d42011 165 SUPERFAMILY SSF160369 4 160 1.07E-47 T 14-09-2016 PAJ_RS18675 2a8a4dc7c197fd956253f91b75d42011 165 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 78 161 1.0E-4 T 14-09-2016 PAJ_RS18675 2a8a4dc7c197fd956253f91b75d42011 165 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 26.848 T 14-09-2016 IPR022973 Ribosomal protein L10 PAJ_RS18675 2a8a4dc7c197fd956253f91b75d42011 165 PANTHER PTHR11560 1 165 9.5E-60 T 14-09-2016 PAJ_RS18675 2a8a4dc7c197fd956253f91b75d42011 165 Pfam PF00466 Ribosomal protein L10 5 101 5.6E-25 T 14-09-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 PAJ_RS14710 7b7ca8b2c7b81899ead74c5235ad4c6e 192 Gene3D G3DSA:3.40.50.1390 1 119 1.1E-45 T 14-09-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PAJ_RS14710 7b7ca8b2c7b81899ead74c5235ad4c6e 192 SUPERFAMILY SSF53041 1 136 3.79E-48 T 14-09-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PAJ_RS14710 7b7ca8b2c7b81899ead74c5235ad4c6e 192 Pfam PF00239 Resolvase, N terminal domain 3 135 3.0E-48 T 14-09-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PAJ_RS14710 7b7ca8b2c7b81899ead74c5235ad4c6e 192 Gene3D G3DSA:1.10.10.60 138 183 1.3E-17 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS14710 7b7ca8b2c7b81899ead74c5235ad4c6e 192 ProSitePatterns PS00397 Site-specific recombinases active site. 5 13 - T 14-09-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 PAJ_RS14710 7b7ca8b2c7b81899ead74c5235ad4c6e 192 Pfam PF02796 Helix-turn-helix domain of resolvase 138 181 1.8E-5 T 14-09-2016 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 PAJ_RS14710 7b7ca8b2c7b81899ead74c5235ad4c6e 192 PANTHER PTHR30461 1 181 8.9E-56 T 14-09-2016 PAJ_RS14710 7b7ca8b2c7b81899ead74c5235ad4c6e 192 SMART SM00857 2 136 2.4E-63 T 14-09-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PAJ_RS14710 7b7ca8b2c7b81899ead74c5235ad4c6e 192 SUPERFAMILY SSF46689 138 184 2.82E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS14710 7b7ca8b2c7b81899ead74c5235ad4c6e 192 ProSitePatterns PS00398 Site-specific recombinases signature 2. 55 67 - T 14-09-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 PANTHER PTHR21371 1 489 5.8E-213 T 14-09-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 22 485 38.599 T 14-09-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 SUPERFAMILY SSF48179 349 484 1.04E-40 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 Gene3D G3DSA:3.40.50.720 1 200 1.3E-74 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 Gene3D G3DSA:1.10.1040.10 359 481 1.5E-16 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 SUPERFAMILY SSF48179 210 343 1.17E-38 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 SUPERFAMILY SSF51735 30 209 1.05E-56 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 367 3.7E-129 T 14-09-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 1.1E-57 T 14-09-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 6.6E-25 T 14-09-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS16860 f7568f4b1060cec06538393e1d29ff04 491 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 358 482 1.4E-23 T 14-09-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PAJ_RS02920 6110d4c9d4869ff74a6d812e827c9f6d 231 PANTHER PTHR30183 1 227 1.0E-89 T 14-09-2016 PAJ_RS02920 6110d4c9d4869ff74a6d812e827c9f6d 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 222 5.0E-25 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS02920 6110d4c9d4869ff74a6d812e827c9f6d 231 Gene3D G3DSA:1.10.3720.10 8 226 5.1E-46 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS02920 6110d4c9d4869ff74a6d812e827c9f6d 231 SUPERFAMILY SSF161098 5 219 1.22E-51 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS02920 6110d4c9d4869ff74a6d812e827c9f6d 231 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 220 2.3E-73 T 14-09-2016 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 PAJ_RS14610 5908b35baa1a46ecb45b5329ba2c0d1c 119 Pfam PF02152 Dihydroneopterin aldolase 4 113 3.5E-32 T 14-09-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PAJ_RS14610 5908b35baa1a46ecb45b5329ba2c0d1c 119 SMART SM00905 4 114 8.9E-47 T 14-09-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PAJ_RS14610 5908b35baa1a46ecb45b5329ba2c0d1c 119 TIGRFAM TIGR00526 folB_dom: FolB domain 1 115 1.4E-36 T 14-09-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PAJ_RS14610 5908b35baa1a46ecb45b5329ba2c0d1c 119 Gene3D G3DSA:3.30.1130.10 1 114 3.3E-42 T 14-09-2016 PAJ_RS14610 5908b35baa1a46ecb45b5329ba2c0d1c 119 PANTHER PTHR20941 1 115 8.2E-33 T 14-09-2016 PAJ_RS14610 5908b35baa1a46ecb45b5329ba2c0d1c 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 1.2E-30 T 14-09-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PAJ_RS14610 5908b35baa1a46ecb45b5329ba2c0d1c 119 SUPERFAMILY SSF55620 1 115 6.04E-36 T 14-09-2016 PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 PANTHER PTHR30290:SF30 119 553 3.6E-187 T 14-09-2016 PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 Gene3D G3DSA:3.90.76.10 141 267 8.0E-25 T 14-09-2016 PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 118 1.5E-41 T 14-09-2016 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 SUPERFAMILY SSF46785 22 87 2.58E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 PANTHER PTHR30290 22 81 3.6E-187 T 14-09-2016 PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 164 370 1.5E-19 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 Gene3D G3DSA:3.40.190.10 268 308 1.8E-7 T 14-09-2016 PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 PANTHER PTHR30290:SF30 22 81 3.6E-187 T 14-09-2016 PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 Gene3D G3DSA:1.10.10.10 22 94 8.7E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 SUPERFAMILY SSF53850 116 550 1.01E-68 T 14-09-2016 PAJ_RS00205 011109ac4abbfc510de6698072614da3 553 PANTHER PTHR30290 119 553 3.6E-187 T 14-09-2016 PAJ_RS10595 c91d558f77360936914666fb71c72cc3 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS10595 c91d558f77360936914666fb71c72cc3 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS10595 c91d558f77360936914666fb71c72cc3 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 1.1E-50 T 14-09-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 PAJ_RS10595 c91d558f77360936914666fb71c72cc3 180 PANTHER PTHR10849 8 180 3.4E-81 T 14-09-2016 PAJ_RS10595 c91d558f77360936914666fb71c72cc3 180 Gene3D G3DSA:3.30.70.20 25 117 1.3E-18 T 14-09-2016 PAJ_RS10595 c91d558f77360936914666fb71c72cc3 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 1 163 27.146 T 14-09-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 PAJ_RS10595 c91d558f77360936914666fb71c72cc3 180 SUPERFAMILY SSF54862 33 153 1.97E-28 T 14-09-2016 PAJ_RS10595 c91d558f77360936914666fb71c72cc3 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 1.3E-11 T 14-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PAJ_RS10595 c91d558f77360936914666fb71c72cc3 180 PANTHER PTHR10849:SF13 8 180 3.4E-81 T 14-09-2016 PAJ_RS01235 9681bb2838446e0c8e5d32ebaed7420f 303 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 71 222 4.0E-47 T 14-09-2016 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 PAJ_RS01235 9681bb2838446e0c8e5d32ebaed7420f 303 Gene3D G3DSA:2.60.120.330 123 229 1.3E-15 T 14-09-2016 IPR027443 Isopenicillin N synthase-like PAJ_RS01235 9681bb2838446e0c8e5d32ebaed7420f 303 PANTHER PTHR12366:SF25 1 243 2.5E-156 T 14-09-2016 PAJ_RS01235 9681bb2838446e0c8e5d32ebaed7420f 303 SUPERFAMILY SSF51197 83 242 2.75E-18 T 14-09-2016 PAJ_RS01235 9681bb2838446e0c8e5d32ebaed7420f 303 PANTHER PTHR12366 1 243 2.5E-156 T 14-09-2016 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 SUPERFAMILY SSF54913 1 112 2.76E-42 T 14-09-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 SMART SM00938 4 105 1.5E-61 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 Gene3D G3DSA:3.30.70.120 1 112 6.3E-48 T 14-09-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 PIRSF PIRSF039144 1 112 3.8E-53 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 PANTHER PTHR30115:SF12 1 112 1.2E-81 T 14-09-2016 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 14-09-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 PRINTS PR00340 P-II protein signature 23 41 6.5E-41 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 PRINTS PR00340 P-II protein signature 83 103 6.5E-41 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 PRINTS PR00340 P-II protein signature 2 17 6.5E-41 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 PRINTS PR00340 P-II protein signature 52 75 6.5E-41 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 14-09-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 PANTHER PTHR30115 1 112 1.2E-81 T 14-09-2016 PAJ_RS01775 2f9afa8a443b732d5126e01cdcc66c71 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.7E-41 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS16815 5ec52f720c7417a1b49220c2bf92947a 337 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 48 322 3.4E-125 T 14-09-2016 IPR005274 Inner membrane protein YhjD PAJ_RS16815 5ec52f720c7417a1b49220c2bf92947a 337 PANTHER PTHR30213 19 330 7.9E-84 T 14-09-2016 PAJ_RS16815 5ec52f720c7417a1b49220c2bf92947a 337 PANTHER PTHR30213:SF1 19 330 7.9E-84 T 14-09-2016 PAJ_RS16815 5ec52f720c7417a1b49220c2bf92947a 337 Pfam PF03631 Virulence factor BrkB 62 321 8.3E-47 T 14-09-2016 IPR017039 Virulence factor BrkB PAJ_RS05925 cab2a02ce22a4c74cb8b5d7772f86234 223 PIRSF PIRSF000498 1 212 6.8E-72 T 14-09-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS05925 cab2a02ce22a4c74cb8b5d7772f86234 223 PANTHER PTHR21098:SF4 1 223 5.0E-125 T 14-09-2016 PAJ_RS05925 cab2a02ce22a4c74cb8b5d7772f86234 223 Pfam PF00677 Lumazine binding domain 100 185 6.7E-19 T 14-09-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS05925 cab2a02ce22a4c74cb8b5d7772f86234 223 Pfam PF00677 Lumazine binding domain 3 87 5.1E-21 T 14-09-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS05925 cab2a02ce22a4c74cb8b5d7772f86234 223 Gene3D G3DSA:2.40.30.20 5 104 2.0E-31 T 14-09-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS05925 cab2a02ce22a4c74cb8b5d7772f86234 223 Gene3D G3DSA:2.40.30.20 105 200 2.8E-25 T 14-09-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS05925 cab2a02ce22a4c74cb8b5d7772f86234 223 SUPERFAMILY SSF63380 1 93 1.11E-27 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PAJ_RS05925 cab2a02ce22a4c74cb8b5d7772f86234 223 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 6.6E-82 T 14-09-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS05925 cab2a02ce22a4c74cb8b5d7772f86234 223 PANTHER PTHR21098 1 223 5.0E-125 T 14-09-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS05925 cab2a02ce22a4c74cb8b5d7772f86234 223 SUPERFAMILY SSF63380 94 202 6.04E-31 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 427 749 1.3E-158 T 14-09-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 SUPERFAMILY SSF51726 5 390 1.96E-112 T 14-09-2016 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 8 753 0.0 T 14-09-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 PANTHER PTHR30519:SF0 1 756 0.0 T 14-09-2016 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 Gene3D G3DSA:3.20.20.210 388 754 1.8E-132 T 14-09-2016 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 SUPERFAMILY SSF51726 393 754 5.1E-118 T 14-09-2016 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 PANTHER PTHR30519 1 756 0.0 T 14-09-2016 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 PIRSF PIRSF000382 2 756 0.0 T 14-09-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 3 754 37.149 T 14-09-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 Gene3D G3DSA:3.20.20.210 5 385 4.9E-149 T 14-09-2016 PAJ_RS18495 d935c481a299fc3c638b103fe5b9de92 756 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 312 3.8E-127 T 14-09-2016 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 PAJ_RS20525 5453e781058a5258a577c145aa99aed6 508 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 358 378 - T 14-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS20525 5453e781058a5258a577c145aa99aed6 508 Gene3D G3DSA:3.30.420.40 256 497 9.1E-52 T 14-09-2016 PAJ_RS20525 5453e781058a5258a577c145aa99aed6 508 PANTHER PTHR10196 1 506 3.7E-101 T 14-09-2016 PAJ_RS20525 5453e781058a5258a577c145aa99aed6 508 Gene3D G3DSA:3.30.420.40 6 250 5.1E-42 T 14-09-2016 PAJ_RS20525 5453e781058a5258a577c145aa99aed6 508 PIRSF PIRSF000538 7 503 9.0E-98 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS20525 5453e781058a5258a577c145aa99aed6 508 SUPERFAMILY SSF53067 9 253 1.3E-41 T 14-09-2016 PAJ_RS20525 5453e781058a5258a577c145aa99aed6 508 PANTHER PTHR10196:SF67 1 506 3.7E-101 T 14-09-2016 PAJ_RS20525 5453e781058a5258a577c145aa99aed6 508 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 263 445 5.0E-36 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 PAJ_RS20525 5453e781058a5258a577c145aa99aed6 508 SUPERFAMILY SSF53067 253 497 2.59E-55 T 14-09-2016 PAJ_RS20525 5453e781058a5258a577c145aa99aed6 508 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 10 250 1.5E-35 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 PAJ_RS01885 7772abdf020edba535dfe242a8ffbad1 201 PANTHER PTHR30446 1 201 1.3E-118 T 14-09-2016 PAJ_RS01885 7772abdf020edba535dfe242a8ffbad1 201 Pfam PF13662 Toprim domain 82 172 4.0E-23 T 14-09-2016 IPR006171 Toprim domain PAJ_RS01885 7772abdf020edba535dfe242a8ffbad1 201 SMART SM00493 81 166 3.3E-17 T 14-09-2016 IPR006171 Toprim domain PAJ_RS01885 7772abdf020edba535dfe242a8ffbad1 201 SUPERFAMILY SSF111304 2 199 2.48E-71 T 14-09-2016 IPR023627 Recombination protein RecR PAJ_RS01885 7772abdf020edba535dfe242a8ffbad1 201 PANTHER PTHR30446:SF0 1 201 1.3E-118 T 14-09-2016 PAJ_RS01885 7772abdf020edba535dfe242a8ffbad1 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 103.134 T 14-09-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 PAJ_RS01885 7772abdf020edba535dfe242a8ffbad1 201 Pfam PF02132 RecR protein 41 77 2.9E-15 T 14-09-2016 IPR023628 Recombination protein RecR, C4-type zinc finger PAJ_RS01885 7772abdf020edba535dfe242a8ffbad1 201 TIGRFAM TIGR00615 recR: recombination protein RecR 2 197 9.7E-81 T 14-09-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 PAJ_RS01885 7772abdf020edba535dfe242a8ffbad1 201 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 14-09-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 PAJ_RS03255 0fdb601b4d729537d1e076d7be3f3888 368 PANTHER PTHR10366:SF382 315 352 3.9E-70 T 14-09-2016 PAJ_RS03255 0fdb601b4d729537d1e076d7be3f3888 368 PANTHER PTHR10366 315 352 3.9E-70 T 14-09-2016 PAJ_RS03255 0fdb601b4d729537d1e076d7be3f3888 368 PANTHER PTHR10366 3 287 3.9E-70 T 14-09-2016 PAJ_RS03255 0fdb601b4d729537d1e076d7be3f3888 368 Gene3D G3DSA:3.40.50.720 2 259 4.7E-30 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS03255 0fdb601b4d729537d1e076d7be3f3888 368 Pfam PF07993 Male sterility protein 6 236 1.9E-35 T 14-09-2016 IPR013120 Male sterility, NAD-binding Reactome: REACT_22258 PAJ_RS03255 0fdb601b4d729537d1e076d7be3f3888 368 SUPERFAMILY SSF51735 2 278 4.74E-32 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS03255 0fdb601b4d729537d1e076d7be3f3888 368 SUPERFAMILY SSF51735 325 356 4.74E-32 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS03255 0fdb601b4d729537d1e076d7be3f3888 368 PANTHER PTHR10366:SF382 3 287 3.9E-70 T 14-09-2016 PAJ_RS13475 87a636eea9799d43489f8cfa29155504 331 Gene3D G3DSA:3.40.50.300 115 330 8.6E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13475 87a636eea9799d43489f8cfa29155504 331 PANTHER PTHR30486 1 330 1.5E-151 T 14-09-2016 PAJ_RS13475 87a636eea9799d43489f8cfa29155504 331 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 330 4.5E-130 T 14-09-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 PAJ_RS13475 87a636eea9799d43489f8cfa29155504 331 PANTHER PTHR30486:SF6 1 330 1.5E-151 T 14-09-2016 PAJ_RS13475 87a636eea9799d43489f8cfa29155504 331 SUPERFAMILY SSF52540 3 330 7.92E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13475 87a636eea9799d43489f8cfa29155504 331 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 194 208 - T 14-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PAJ_RS13475 87a636eea9799d43489f8cfa29155504 331 Pfam PF00437 Type II/IV secretion system protein 13 271 3.6E-40 T 14-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 2.1E-25 T 14-09-2016 IPR025110 AMP-binding enzyme C-terminal domain PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 Gene3D G3DSA:3.30.300.30 518 637 3.9E-29 T 14-09-2016 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 643 0.0 T 14-09-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 Gene3D G3DSA:3.40.50.980 79 266 1.2E-43 T 14-09-2016 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 8.5E-21 T 14-09-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 PANTHER PTHR24095 11 650 0.0 T 14-09-2016 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 Gene3D G3DSA:2.30.38.10 439 515 5.9E-7 T 14-09-2016 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 PANTHER PTHR24095:SF178 11 650 0.0 T 14-09-2016 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 52.192 T 14-09-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 SUPERFAMILY SSF56801 11 643 1.44E-185 T 14-09-2016 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 Pfam PF00501 AMP-binding enzyme 83 522 1.1E-92 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 Gene3D G3DSA:3.40.50.980 267 424 1.3E-28 T 14-09-2016 PAJ_RS19095 d84facd75a0bf6bbe42cf30d4867ac74 651 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 14-09-2016 IPR020845 AMP-binding, conserved site PAJ_RS13450 0958d37fc84ba3c1a127822af95f7440 235 PANTHER PTHR33607 21 229 3.2E-60 T 14-09-2016 PAJ_RS13450 0958d37fc84ba3c1a127822af95f7440 235 SUPERFAMILY SSF54060 28 232 1.02E-84 T 14-09-2016 PAJ_RS13450 0958d37fc84ba3c1a127822af95f7440 235 Pfam PF04231 Endonuclease I 61 232 5.1E-42 T 14-09-2016 IPR007346 Endonuclease I GO:0004518 PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 SUPERFAMILY SSF53335 15 294 2.92E-51 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 PANTHER PTHR18895 4 302 1.1E-186 T 14-09-2016 PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 1.5E-137 T 14-09-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 303 9.8E-104 T 14-09-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 Pfam PF05175 Methyltransferase small domain 132 216 1.3E-16 T 14-09-2016 IPR007848 Methyltransferase small domain GO:0008168 PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 54.299 T 14-09-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 Gene3D G3DSA:1.10.8.10 15 106 9.7E-7 T 14-09-2016 PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 Gene3D G3DSA:3.40.50.150 108 289 3.5E-53 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 PIRSF PIRSF037167 1 307 1.2E-149 T 14-09-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 PAJ_RS10900 f7667f2c02d045a55f41f4adfbe0df13 310 PANTHER PTHR18895:SF66 4 302 1.1E-186 T 14-09-2016 PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 104 121 - T 14-09-2016 IPR018046 Pili assembly chaperone, conserved site PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 30 149 7.7E-37 T 14-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 172 226 7.6E-12 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 Gene3D G3DSA:2.60.40.360 31 147 1.4E-41 T 14-09-2016 IPR008962 PapD-like PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 PANTHER PTHR30251:SF11 1 233 3.2E-82 T 14-09-2016 PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 PRINTS PR00969 Pili chaperone signature 31 40 1.0E-33 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 PRINTS PR00969 Pili chaperone signature 131 146 1.0E-33 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 PRINTS PR00969 Pili chaperone signature 166 181 1.0E-33 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 PRINTS PR00969 Pili chaperone signature 105 122 1.0E-33 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 PRINTS PR00969 Pili chaperone signature 76 97 1.0E-33 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 Gene3D G3DSA:2.60.40.1070 152 228 2.0E-22 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 SUPERFAMILY SSF49354 30 149 6.28E-38 T 14-09-2016 IPR008962 PapD-like PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 PANTHER PTHR30251 1 233 3.2E-82 T 14-09-2016 PAJ_RS05220 d14974e72b7c67789ea285c683e7f2a4 233 SUPERFAMILY SSF49584 143 228 5.36E-19 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS06465 c69a622af8b866dd37c3cf09ea1655a3 394 Gene3D G3DSA:1.20.1250.20 13 189 9.5E-13 T 14-09-2016 PAJ_RS06465 c69a622af8b866dd37c3cf09ea1655a3 394 Pfam PF07690 Major Facilitator Superfamily 17 313 1.5E-8 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS06465 c69a622af8b866dd37c3cf09ea1655a3 394 PANTHER PTHR11360 4 380 7.4E-48 T 14-09-2016 PAJ_RS06465 c69a622af8b866dd37c3cf09ea1655a3 394 SUPERFAMILY SSF103473 11 386 2.62E-29 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS06465 c69a622af8b866dd37c3cf09ea1655a3 394 PANTHER PTHR11360:SF126 4 380 7.4E-48 T 14-09-2016 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 PANTHER PTHR30146:SF57 1 333 3.4E-250 T 14-09-2016 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 Gene3D G3DSA:1.10.260.40 2 57 2.0E-25 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 Gene3D G3DSA:3.40.50.2300 167 330 3.6E-52 T 14-09-2016 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 SMART SM00354 1 71 4.2E-36 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.5E-7 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.5E-7 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 Pfam PF13377 Periplasmic binding protein-like domain 168 329 1.2E-37 T 14-09-2016 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 SUPERFAMILY SSF47413 1 59 3.56E-17 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 SUPERFAMILY SSF53822 61 332 9.23E-84 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 5.6E-21 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 Gene3D G3DSA:3.40.50.2300 58 166 2.2E-42 T 14-09-2016 PAJ_RS20005 3fb14e599a2f3cda64744c16f5c56a6d 336 PANTHER PTHR30146 1 333 3.4E-250 T 14-09-2016 PAJ_RS04475 62a74c5ce1275309eab00143a6fdd2cc 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 4.4E-49 T 14-09-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G PAJ_RS04475 62a74c5ce1275309eab00143a6fdd2cc 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 146 243 6.7E-30 T 14-09-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G PAJ_RS04475 62a74c5ce1275309eab00143a6fdd2cc 260 PANTHER PTHR30435 1 260 5.6E-134 T 14-09-2016 PAJ_RS04475 62a74c5ce1275309eab00143a6fdd2cc 260 Pfam PF00460 Flagella basal body rod protein 5 35 6.7E-13 T 14-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PAJ_RS04475 62a74c5ce1275309eab00143a6fdd2cc 260 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 259 4.9E-118 T 14-09-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 PAJ_RS04475 62a74c5ce1275309eab00143a6fdd2cc 260 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 260 4.8E-25 T 14-09-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain PAJ_RS04475 62a74c5ce1275309eab00143a6fdd2cc 260 PANTHER PTHR30435:SF19 1 260 5.6E-134 T 14-09-2016 PAJ_RS04475 62a74c5ce1275309eab00143a6fdd2cc 260 SUPERFAMILY SSF117143 93 222 2.48E-35 T 14-09-2016 PAJ_RS04475 62a74c5ce1275309eab00143a6fdd2cc 260 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 14-09-2016 IPR019776 Flagellar basal body rod protein, conserved site PAJ_RS01210 efb28264039707bbed681fe2b7edb6e6 582 Gene3D G3DSA:2.160.20.10 252 396 3.7E-11 T 14-09-2016 IPR012334 Pectin lyase fold PAJ_RS01210 efb28264039707bbed681fe2b7edb6e6 582 Gene3D G3DSA:2.160.20.10 71 187 3.7E-11 T 14-09-2016 IPR012334 Pectin lyase fold PAJ_RS01210 efb28264039707bbed681fe2b7edb6e6 582 SUPERFAMILY SSF51126 266 398 3.27E-11 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS01210 efb28264039707bbed681fe2b7edb6e6 582 SUPERFAMILY SSF51126 71 201 3.27E-11 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS01210 efb28264039707bbed681fe2b7edb6e6 582 Pfam PF12708 Pectate lyase superfamily protein 74 325 3.2E-10 T 14-09-2016 IPR024535 Pectate lyase superfamily protein PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 Gene3D G3DSA:3.40.630.30 1 209 1.1E-62 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 PANTHER PTHR39322 2 210 5.9E-81 T 14-09-2016 PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 Pfam PF00765 Autoinducer synthase 10 186 1.3E-60 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 SUPERFAMILY SSF55729 1 186 4.64E-42 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 PRINTS PR01549 Autoinducer synthesis protein signature 118 139 1.3E-51 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 PRINTS PR01549 Autoinducer synthesis protein signature 93 105 1.3E-51 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 PRINTS PR01549 Autoinducer synthesis protein signature 140 161 1.3E-51 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 PRINTS PR01549 Autoinducer synthesis protein signature 162 179 1.3E-51 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 1.3E-51 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 PRINTS PR01549 Autoinducer synthesis protein signature 39 61 1.3E-51 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 PRINTS PR01549 Autoinducer synthesis protein signature 62 80 1.3E-51 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 PANTHER PTHR39322:SF1 2 210 5.9E-81 T 14-09-2016 PAJ_RS07135 c6591e2eee478333f2554d04c3650a3f 210 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 48 - T 14-09-2016 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS10125 9d7d5161b6623f3ccdbf0d3465a78e37 230 Pfam PF04172 LrgB-like family 11 223 1.8E-75 T 14-09-2016 IPR007300 CidB/LrgB family PAJ_RS10125 9d7d5161b6623f3ccdbf0d3465a78e37 230 PANTHER PTHR30249:SF5 1 225 4.0E-105 T 14-09-2016 PAJ_RS10125 9d7d5161b6623f3ccdbf0d3465a78e37 230 PANTHER PTHR30249 1 225 4.0E-105 T 14-09-2016 PAJ_RS10125 9d7d5161b6623f3ccdbf0d3465a78e37 230 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 1 225 4.2E-94 T 14-09-2016 IPR005261 Conserved hypothetical protein CHP00659 PAJ_RS09500 37606e3257255669b8b7bde3eee9d9ae 317 SUPERFAMILY SSF161098 95 297 1.2E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09500 37606e3257255669b8b7bde3eee9d9ae 317 PANTHER PTHR30465:SF24 5 317 4.6E-89 T 14-09-2016 PAJ_RS09500 37606e3257255669b8b7bde3eee9d9ae 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 316 5.0E-34 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09500 37606e3257255669b8b7bde3eee9d9ae 317 PANTHER PTHR30465 5 317 4.6E-89 T 14-09-2016 PAJ_RS09500 37606e3257255669b8b7bde3eee9d9ae 317 Gene3D G3DSA:1.10.3720.10 92 311 2.3E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03435 38d0e5ff8b87fe92d50f6d5004fe929d 159 Pfam PF10722 Putative bacterial sensory transduction regulator 9 132 1.7E-13 T 14-09-2016 IPR019660 Putative sensory transduction regulator YbjN PAJ_RS15990 41f0c43144ff4a7b27abb16483bf203b 72 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 67 1.0E-23 T 14-09-2016 IPR010648 Uncharacterised protein family UPF0270 PAJ_RS15990 41f0c43144ff4a7b27abb16483bf203b 72 PIRSF PIRSF006169 1 72 1.3E-37 T 14-09-2016 IPR010648 Uncharacterised protein family UPF0270 PAJ_RS15990 41f0c43144ff4a7b27abb16483bf203b 72 Gene3D G3DSA:1.10.10.610 1 71 1.7E-36 T 14-09-2016 IPR010648 Uncharacterised protein family UPF0270 PAJ_RS15990 41f0c43144ff4a7b27abb16483bf203b 72 SUPERFAMILY SSF118001 1 70 3.53E-29 T 14-09-2016 IPR010648 Uncharacterised protein family UPF0270 PAJ_RS15990 41f0c43144ff4a7b27abb16483bf203b 72 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 24.127 T 14-09-2016 IPR010648 Uncharacterised protein family UPF0270 PAJ_RS15990 41f0c43144ff4a7b27abb16483bf203b 72 Pfam PF06794 Uncharacterised protein family (UPF0270) 2 68 6.5E-35 T 14-09-2016 IPR010648 Uncharacterised protein family UPF0270 PAJ_RS16525 c150f45f45d3eb034fa486d8fd59d4f5 521 Gene3D G3DSA:3.40.190.10 141 291 7.0E-46 T 14-09-2016 PAJ_RS16525 c150f45f45d3eb034fa486d8fd59d4f5 521 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 82 436 1.7E-94 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS16525 c150f45f45d3eb034fa486d8fd59d4f5 521 PANTHER PTHR30290:SF14 18 514 3.6E-147 T 14-09-2016 PAJ_RS16525 c150f45f45d3eb034fa486d8fd59d4f5 521 PANTHER PTHR30290 18 514 3.6E-147 T 14-09-2016 PAJ_RS16525 c150f45f45d3eb034fa486d8fd59d4f5 521 Gene3D G3DSA:3.10.105.10 292 489 1.3E-58 T 14-09-2016 PAJ_RS16525 c150f45f45d3eb034fa486d8fd59d4f5 521 PIRSF PIRSF002741 16 520 8.4E-105 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS16525 c150f45f45d3eb034fa486d8fd59d4f5 521 SUPERFAMILY SSF53850 34 512 2.74E-136 T 14-09-2016 PAJ_RS16790 63d991108c7e8024b47b2aa62130b762 496 SUPERFAMILY SSF53383 100 468 6.12E-81 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS16790 63d991108c7e8024b47b2aa62130b762 496 SUPERFAMILY SSF46785 5 77 2.31E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16790 63d991108c7e8024b47b2aa62130b762 496 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 1.4E-12 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS16790 63d991108c7e8024b47b2aa62130b762 496 PANTHER PTHR11751:SF314 97 468 5.2E-115 T 14-09-2016 PAJ_RS16790 63d991108c7e8024b47b2aa62130b762 496 Pfam PF00155 Aminotransferase class I and II 137 456 2.8E-23 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS16790 63d991108c7e8024b47b2aa62130b762 496 PANTHER PTHR11751 97 468 5.2E-115 T 14-09-2016 PAJ_RS16790 63d991108c7e8024b47b2aa62130b762 496 Gene3D G3DSA:3.40.640.10 143 367 1.6E-58 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS16790 63d991108c7e8024b47b2aa62130b762 496 SMART SM00345 15 74 2.5E-12 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS16790 63d991108c7e8024b47b2aa62130b762 496 Gene3D G3DSA:1.10.10.10 4 75 5.1E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS17395 2a65e889c16d44a0181ec7368be88830 91 Pfam PF01192 RNA polymerase Rpb6 10 60 6.6E-17 T 14-09-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS17395 2a65e889c16d44a0181ec7368be88830 91 SMART SM01409 8 61 2.3E-16 T 14-09-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS17395 2a65e889c16d44a0181ec7368be88830 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.869 T 14-09-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS17395 2a65e889c16d44a0181ec7368be88830 91 SUPERFAMILY SSF63562 2 80 7.33E-26 T 14-09-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS17395 2a65e889c16d44a0181ec7368be88830 91 Gene3D G3DSA:3.90.940.10 1 78 5.8E-17 T 14-09-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS17395 2a65e889c16d44a0181ec7368be88830 91 PANTHER PTHR34476 2 91 9.8E-34 T 14-09-2016 PAJ_RS17395 2a65e889c16d44a0181ec7368be88830 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 1.0E-30 T 14-09-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS14275 8249cdbbcb3a893f730bff9ee7941cfe 308 PANTHER PTHR30450:SF2 38 282 3.3E-66 T 14-09-2016 PAJ_RS14275 8249cdbbcb3a893f730bff9ee7941cfe 308 SUPERFAMILY SSF161098 52 259 7.06E-40 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS14275 8249cdbbcb3a893f730bff9ee7941cfe 308 PANTHER PTHR30450 38 282 3.3E-66 T 14-09-2016 PAJ_RS14275 8249cdbbcb3a893f730bff9ee7941cfe 308 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 53 168 3.4E-14 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS14275 8249cdbbcb3a893f730bff9ee7941cfe 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 275 2.6E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS14275 8249cdbbcb3a893f730bff9ee7941cfe 308 Gene3D G3DSA:1.10.3720.10 49 274 7.3E-44 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09600 f95d9d46cc5bee6edeadbadfb879eebb 212 PANTHER PTHR30328:SF16 7 208 2.4E-62 T 14-09-2016 PAJ_RS09600 f95d9d46cc5bee6edeadbadfb879eebb 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 62 2.7E-11 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS09600 f95d9d46cc5bee6edeadbadfb879eebb 212 SUPERFAMILY SSF46689 6 77 7.7E-16 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS09600 f95d9d46cc5bee6edeadbadfb879eebb 212 SUPERFAMILY SSF48498 84 209 3.36E-28 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS09600 f95d9d46cc5bee6edeadbadfb879eebb 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 2.0E-6 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS09600 f95d9d46cc5bee6edeadbadfb879eebb 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 2.0E-6 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS09600 f95d9d46cc5bee6edeadbadfb879eebb 212 PANTHER PTHR30328 7 208 2.4E-62 T 14-09-2016 PAJ_RS09600 f95d9d46cc5bee6edeadbadfb879eebb 212 Gene3D G3DSA:1.10.357.10 65 199 2.8E-22 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS09600 f95d9d46cc5bee6edeadbadfb879eebb 212 Gene3D G3DSA:1.10.10.60 6 63 2.6E-17 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS17565 5203f556d94092d0a6a651a89a4b4e56 133 PANTHER PTHR36571 5 133 1.2E-44 T 14-09-2016 PAJ_RS17565 5203f556d94092d0a6a651a89a4b4e56 133 Gene3D G3DSA:2.40.50.200 32 132 9.7E-39 T 14-09-2016 IPR005220 Bacterial OB-fold PAJ_RS17565 5203f556d94092d0a6a651a89a4b4e56 133 SUPERFAMILY SSF101756 33 132 4.45E-32 T 14-09-2016 IPR005220 Bacterial OB-fold PAJ_RS17565 5203f556d94092d0a6a651a89a4b4e56 133 PANTHER PTHR36571:SF1 5 133 1.2E-44 T 14-09-2016 PAJ_RS17565 5203f556d94092d0a6a651a89a4b4e56 133 Pfam PF04076 Bacterial OB fold (BOF) protein 34 131 6.3E-36 T 14-09-2016 IPR005220 Bacterial OB-fold PAJ_RS17565 5203f556d94092d0a6a651a89a4b4e56 133 TIGRFAM TIGR00156 TIGR00156: TIGR00156 family protein 2 131 6.4E-47 T 14-09-2016 IPR016052 Bacteriophage 933W, L0136 PAJ_RS07515 931fa7d983b115e907004eb7e2327660 296 PANTHER PTHR30465:SF49 7 296 2.9E-174 T 14-09-2016 PAJ_RS07515 931fa7d983b115e907004eb7e2327660 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 66 5.0E-9 T 14-09-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PAJ_RS07515 931fa7d983b115e907004eb7e2327660 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 295 1.7E-23 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07515 931fa7d983b115e907004eb7e2327660 296 Gene3D G3DSA:1.10.3720.10 89 291 4.2E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07515 931fa7d983b115e907004eb7e2327660 296 PANTHER PTHR30465 7 296 2.9E-174 T 14-09-2016 PAJ_RS07515 931fa7d983b115e907004eb7e2327660 296 SUPERFAMILY SSF161098 90 275 2.49E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11550 630a10f80f96173780e813bfd92a0c14 237 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 14-09-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 PAJ_RS11550 630a10f80f96173780e813bfd92a0c14 237 PANTHER PTHR11609:SF2 3 236 4.5E-118 T 14-09-2016 PAJ_RS11550 630a10f80f96173780e813bfd92a0c14 237 Pfam PF01259 SAICAR synthetase 6 230 1.8E-56 T 14-09-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 PAJ_RS11550 630a10f80f96173780e813bfd92a0c14 237 SUPERFAMILY SSF56104 4 232 1.08E-74 T 14-09-2016 PAJ_RS11550 630a10f80f96173780e813bfd92a0c14 237 Gene3D G3DSA:3.30.200.20 7 93 5.3E-32 T 14-09-2016 PAJ_RS11550 630a10f80f96173780e813bfd92a0c14 237 Gene3D G3DSA:3.30.470.20 94 219 3.2E-49 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS11550 630a10f80f96173780e813bfd92a0c14 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 14-09-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 PAJ_RS11550 630a10f80f96173780e813bfd92a0c14 237 PANTHER PTHR11609 3 236 4.5E-118 T 14-09-2016 PAJ_RS11550 630a10f80f96173780e813bfd92a0c14 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 28.714 T 14-09-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 PAJ_RS11550 630a10f80f96173780e813bfd92a0c14 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 235 3.1E-80 T 14-09-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 PAJ_RS07760 6e58f5c27857fd7041e9c48f71689d75 98 SUPERFAMILY SSF54909 2 98 6.61E-30 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS07760 6e58f5c27857fd7041e9c48f71689d75 98 Pfam PF03795 YCII-related domain 2 95 3.6E-28 T 14-09-2016 IPR005545 YCII-related PAJ_RS07760 6e58f5c27857fd7041e9c48f71689d75 98 PANTHER PTHR33606 1 98 1.1E-32 T 14-09-2016 PAJ_RS07760 6e58f5c27857fd7041e9c48f71689d75 98 Gene3D G3DSA:3.30.70.1060 2 98 5.2E-36 T 14-09-2016 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 ProSitePatterns PS00438 Catalase proximal active site signature. 46 62 - T 14-09-2016 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 Pfam PF06628 Catalase-related immune-responsive 419 480 1.5E-14 T 14-09-2016 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 335 343 - T 14-09-2016 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 Pfam PF00199 Catalase 10 387 1.1E-184 T 14-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 SMART SM01060 10 391 9.3E-275 T 14-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 Gene3D G3DSA:2.40.180.10 3 359 1.4E-174 T 14-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 SUPERFAMILY SSF56634 3 482 3.66E-198 T 14-09-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 PANTHER PTHR11465 10 481 1.3E-263 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 PIRSF PIRSF038928 1 487 7.3E-227 T 14-09-2016 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 PRINTS PR00067 Catalase signature 23 46 1.4E-64 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 PRINTS PR00067 Catalase signature 85 103 1.4E-64 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 PRINTS PR00067 Catalase signature 106 123 1.4E-64 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 PRINTS PR00067 Catalase signature 290 317 1.4E-64 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 PRINTS PR00067 Catalase signature 322 348 1.4E-64 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06645 2a17c01af221c7637964cdd6b5767d50 488 PRINTS PR00067 Catalase signature 125 143 1.4E-64 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 Gene3D G3DSA:3.40.50.300 6 226 6.9E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 Pfam PF00005 ABC transporter 23 172 1.3E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 Pfam PF00005 ABC transporter 275 427 6.3E-19 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 SUPERFAMILY SSF52540 273 489 3.46E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 Gene3D G3DSA:3.40.50.300 270 492 3.1E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 SMART SM00382 281 476 5.3E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 SMART SM00382 32 220 5.1E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 SUPERFAMILY SSF52540 7 226 5.88E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 PANTHER PTHR24220:SF516 9 381 4.7E-208 T 14-09-2016 PAJ_RS06420 97e2a3533789b124aeba752a4631b061 506 PANTHER PTHR24220 9 381 4.7E-208 T 14-09-2016 PAJ_RS16585 66135d0290fd7b87f797f80b642a4a81 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.661 T 14-09-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 PAJ_RS16585 66135d0290fd7b87f797f80b642a4a81 280 PANTHER PTHR37426 2 280 6.1E-159 T 14-09-2016 PAJ_RS16585 66135d0290fd7b87f797f80b642a4a81 280 SUPERFAMILY SSF53335 9 279 1.84E-99 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS16585 66135d0290fd7b87f797f80b642a4a81 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 276 3.7E-110 T 14-09-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 PAJ_RS16585 66135d0290fd7b87f797f80b642a4a81 280 Gene3D G3DSA:3.40.50.150 1 279 9.1E-118 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS16585 66135d0290fd7b87f797f80b642a4a81 280 PANTHER PTHR37426:SF1 2 280 6.1E-159 T 14-09-2016 PAJ_RS16585 66135d0290fd7b87f797f80b642a4a81 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS16585 66135d0290fd7b87f797f80b642a4a81 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 161 167 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 Gene3D G3DSA:1.10.8.260 270 322 1.5E-22 T 14-09-2016 IPR023166 HI0933 insert-like domain PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 PANTHER PTHR10617 330 394 2.7E-132 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 PANTHER PTHR10617:SF103 2 286 2.7E-132 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 PANTHER PTHR10617:SF103 330 394 2.7E-132 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.6E-8 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 362 369 2.6E-8 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 2.6E-8 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 SUPERFAMILY SSF51905 337 394 3.97E-59 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 SUPERFAMILY SSF51905 3 188 3.97E-59 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 392 6.6E-129 T 14-09-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 Gene3D G3DSA:2.40.30.10 188 269 1.6E-26 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 Pfam PF03486 HI0933-like protein 4 392 7.1E-156 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 347 369 1.0E-4 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.0E-4 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 Gene3D G3DSA:3.50.50.60 3 186 6.7E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 Gene3D G3DSA:3.50.50.60 339 393 6.7E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 PANTHER PTHR10617 2 286 2.7E-132 T 14-09-2016 PAJ_RS16555 e3ab392de4358455db737c4dd850b6f6 394 SUPERFAMILY SSF160996 190 338 7.19E-43 T 14-09-2016 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 Pfam PF01494 FAD binding domain 2 338 5.9E-28 T 14-09-2016 IPR002938 FAD-binding domain GO:0071949 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 SUPERFAMILY SSF51905 264 357 1.3E-56 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 SUPERFAMILY SSF51905 1 167 1.3E-56 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 PANTHER PTHR13789 1 343 1.0E-83 T 14-09-2016 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 Gene3D G3DSA:3.50.50.60 2 173 3.3E-35 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 Gene3D G3DSA:3.50.50.60 265 342 3.3E-35 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 PANTHER PTHR13789:SF186 1 343 1.0E-83 T 14-09-2016 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 146 161 3.2E-18 T 14-09-2016 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 3.2E-18 T 14-09-2016 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 3.2E-18 T 14-09-2016 PAJ_RS07165 e7fb52a534a717d57cc66d24e1e1bb99 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 3.2E-18 T 14-09-2016 PAJ_RS14335 99e7cc0aa9266044711f3eb2de1bb622 173 SMART SM00972 114 170 2.9E-13 T 14-09-2016 IPR007893 Spore coat protein U PAJ_RS14335 99e7cc0aa9266044711f3eb2de1bb622 173 Pfam PF05229 Spore Coat Protein U domain 30 170 1.0E-28 T 14-09-2016 IPR007893 Spore coat protein U PAJ_RS14335 99e7cc0aa9266044711f3eb2de1bb622 173 PANTHER PTHR37089 23 173 3.7E-18 T 14-09-2016 PAJ_RS14335 99e7cc0aa9266044711f3eb2de1bb622 173 SUPERFAMILY SSF49401 42 173 6.46E-6 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS16800 888252abad265e3ee780a18bdfeca8e8 282 PIRSF PIRSF016184 1 282 4.3E-73 T 14-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- PAJ_RS16800 888252abad265e3ee780a18bdfeca8e8 282 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 280 8.0E-61 T 14-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- PAJ_RS16800 888252abad265e3ee780a18bdfeca8e8 282 SUPERFAMILY SSF54506 1 280 8.01E-71 T 14-09-2016 PAJ_RS16800 888252abad265e3ee780a18bdfeca8e8 282 PANTHER PTHR13774:SF18 5 281 1.7E-90 T 14-09-2016 PAJ_RS16800 888252abad265e3ee780a18bdfeca8e8 282 Pfam PF02567 Phenazine biosynthesis-like protein 8 278 2.4E-57 T 14-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- PAJ_RS16800 888252abad265e3ee780a18bdfeca8e8 282 Gene3D G3DSA:3.10.310.10 128 271 1.9E-36 T 14-09-2016 PAJ_RS16800 888252abad265e3ee780a18bdfeca8e8 282 Gene3D G3DSA:3.10.310.10 1 127 2.2E-44 T 14-09-2016 PAJ_RS16800 888252abad265e3ee780a18bdfeca8e8 282 PANTHER PTHR13774 5 281 1.7E-90 T 14-09-2016 PAJ_RS00395 611312500a4e002ec97d57ff9975120b 399 PANTHER PTHR30012 6 399 1.2E-130 T 14-09-2016 PAJ_RS00395 611312500a4e002ec97d57ff9975120b 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 60 72 7.9E-12 T 14-09-2016 IPR003004 GspF/PilC family PAJ_RS00395 611312500a4e002ec97d57ff9975120b 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 363 377 7.9E-12 T 14-09-2016 IPR003004 GspF/PilC family PAJ_RS00395 611312500a4e002ec97d57ff9975120b 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 379 398 7.9E-12 T 14-09-2016 IPR003004 GspF/PilC family PAJ_RS00395 611312500a4e002ec97d57ff9975120b 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 159 187 7.9E-12 T 14-09-2016 IPR003004 GspF/PilC family PAJ_RS00395 611312500a4e002ec97d57ff9975120b 399 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 159 187 - T 14-09-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 PAJ_RS00395 611312500a4e002ec97d57ff9975120b 399 Pfam PF00482 Type II secretion system (T2SS), protein F 272 390 1.6E-24 T 14-09-2016 IPR018076 Type II secretion system F domain PAJ_RS00395 611312500a4e002ec97d57ff9975120b 399 Pfam PF00482 Type II secretion system (T2SS), protein F 65 187 1.8E-27 T 14-09-2016 IPR018076 Type II secretion system F domain PAJ_RS00395 611312500a4e002ec97d57ff9975120b 399 PANTHER PTHR30012:SF0 6 399 1.2E-130 T 14-09-2016 PAJ_RS15845 63a83d54d3dcbabe2574c6f6001a4217 100 SUPERFAMILY SSF54189 6 97 4.32E-30 T 14-09-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15845 63a83d54d3dcbabe2574c6f6001a4217 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.244 T 14-09-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15845 63a83d54d3dcbabe2574c6f6001a4217 100 Pfam PF00276 Ribosomal protein L23 9 95 7.9E-31 T 14-09-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15845 63a83d54d3dcbabe2574c6f6001a4217 100 PANTHER PTHR11620 9 95 1.3E-31 T 14-09-2016 PAJ_RS15845 63a83d54d3dcbabe2574c6f6001a4217 100 Gene3D G3DSA:3.30.70.330 6 98 5.2E-34 T 14-09-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 PAJ_RS15845 63a83d54d3dcbabe2574c6f6001a4217 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 14-09-2016 IPR001014 Ribosomal protein L23/L25, conserved site PAJ_RS11780 daff5dae259ee2a71bdade5d5f7bacd0 526 TIGRFAM TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL 30 326 3.0E-82 T 14-09-2016 IPR014150 Conjugal transfer, TrbL PAJ_RS11780 daff5dae259ee2a71bdade5d5f7bacd0 526 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 64 266 1.5E-25 T 14-09-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 PAJ_RS05675 a07e13250f9656ddcbada02beb6bc7b4 441 Pfam PF04996 Succinylarginine dihydrolase 3 440 1.4E-213 T 14-09-2016 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23|UniPathway: UPA00185 PAJ_RS05675 a07e13250f9656ddcbada02beb6bc7b4 441 PANTHER PTHR30420:SF2 2 441 1.5E-291 T 14-09-2016 PAJ_RS05675 a07e13250f9656ddcbada02beb6bc7b4 441 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 441 57.966 T 14-09-2016 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23|UniPathway: UPA00185 PAJ_RS05675 a07e13250f9656ddcbada02beb6bc7b4 441 PANTHER PTHR30420 2 441 1.5E-291 T 14-09-2016 PAJ_RS05675 a07e13250f9656ddcbada02beb6bc7b4 441 Gene3D G3DSA:3.75.10.20 1 441 8.2E-226 T 14-09-2016 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23|UniPathway: UPA00185 PAJ_RS05675 a07e13250f9656ddcbada02beb6bc7b4 441 SUPERFAMILY SSF55909 3 441 1.08E-201 T 14-09-2016 PAJ_RS05675 a07e13250f9656ddcbada02beb6bc7b4 441 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 440 3.9E-230 T 14-09-2016 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23|UniPathway: UPA00185 PAJ_RS14595 13cf8b627883dc8f47af04c0071b596e 206 PIRSF PIRSF006158 1 205 1.5E-72 T 14-09-2016 IPR016476 SH3 domain protein PAJ_RS14595 13cf8b627883dc8f47af04c0071b596e 206 SMART SM00287 23 89 1.1E-7 T 14-09-2016 IPR003646 SH3-like domain, bacterial-type PAJ_RS14595 13cf8b627883dc8f47af04c0071b596e 206 Pfam PF08239 Bacterial SH3 domain 35 85 1.3E-6 T 14-09-2016 IPR003646 SH3-like domain, bacterial-type PAJ_RS14595 13cf8b627883dc8f47af04c0071b596e 206 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 27 204 7.2E-53 T 14-09-2016 IPR016476 SH3 domain protein PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 PANTHER PTHR22572:SF115 7 449 3.4E-221 T 14-09-2016 PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 Gene3D G3DSA:3.90.550.10 2 244 4.5E-69 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 Pfam PF12804 MobA-like NTP transferase domain 8 122 2.3E-22 T 14-09-2016 IPR025877 MobA-like NTP transferase PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 5 452 42.112 T 14-09-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 Gene3D G3DSA:2.160.10.10 245 324 4.2E-19 T 14-09-2016 PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 SUPERFAMILY SSF51161 255 437 3.3E-48 T 14-09-2016 IPR011004 Trimeric LpxA-like PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 455 7.9E-201 T 14-09-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 Gene3D G3DSA:2.160.10.10 325 454 7.7E-32 T 14-09-2016 PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 SUPERFAMILY SSF53448 6 252 8.76E-66 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 PANTHER PTHR22572 7 449 3.4E-221 T 14-09-2016 PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 300 6.6E-7 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS17665 2c2687daf0f29a9176e78d5febd2fa6c 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 427 9.9E-5 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 PANTHER PTHR30537:SF5 1 278 3.5E-73 T 14-09-2016 PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 Gene3D G3DSA:1.10.10.10 3 84 1.5E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.3E-20 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.1E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.1E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.1E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 PANTHER PTHR30537 1 278 3.5E-73 T 14-09-2016 PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 SUPERFAMILY SSF53850 89 285 1.03E-25 T 14-09-2016 PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 Gene3D G3DSA:3.40.190.10 169 255 3.6E-11 T 14-09-2016 PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 Pfam PF03466 LysR substrate binding domain 89 286 3.0E-26 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 SUPERFAMILY SSF46785 4 88 1.3E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00120 667f19632d2ba90c82a196548314cc12 295 Gene3D G3DSA:3.40.190.10 97 168 1.3E-7 T 14-09-2016 PAJ_RS14210 5ca6ba7b49f11ac7cad2702e68fa26fe 787 SUPERFAMILY SSF51445 246 593 1.35E-73 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS14210 5ca6ba7b49f11ac7cad2702e68fa26fe 787 PANTHER PTHR22762:SF7 21 779 6.9E-263 T 14-09-2016 PAJ_RS14210 5ca6ba7b49f11ac7cad2702e68fa26fe 787 Pfam PF13802 Galactose mutarotase-like 146 212 1.9E-20 T 14-09-2016 IPR025887 Glycoside hydrolase family 31, N-terminal domain PAJ_RS14210 5ca6ba7b49f11ac7cad2702e68fa26fe 787 PANTHER PTHR22762 21 779 6.9E-263 T 14-09-2016 PAJ_RS14210 5ca6ba7b49f11ac7cad2702e68fa26fe 787 SUPERFAMILY SSF51011 596 677 4.68E-20 T 14-09-2016 PAJ_RS14210 5ca6ba7b49f11ac7cad2702e68fa26fe 787 SUPERFAMILY SSF74650 2 243 2.23E-44 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS14210 5ca6ba7b49f11ac7cad2702e68fa26fe 787 Pfam PF01055 Glycosyl hydrolases family 31 237 682 1.2E-121 T 14-09-2016 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 PAJ_RS14210 5ca6ba7b49f11ac7cad2702e68fa26fe 787 Pfam PF17137 Domain of unknown function (DUF5110) 700 760 1.9E-7 T 14-09-2016 IPR033403 Domain of unknown function DUF5110 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PANTHER PTHR30477:SF16 27 291 1.7E-78 T 14-09-2016 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00690 Adhesin family signature 54 67 9.5E-27 T 14-09-2016 IPR006128 Adhesion lipoprotein GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00690 Adhesin family signature 23 41 9.5E-27 T 14-09-2016 IPR006128 Adhesion lipoprotein GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00690 Adhesin family signature 67 84 9.5E-27 T 14-09-2016 IPR006128 Adhesion lipoprotein GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00690 Adhesin family signature 231 249 9.5E-27 T 14-09-2016 IPR006128 Adhesion lipoprotein GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00690 Adhesin family signature 178 199 9.5E-27 T 14-09-2016 IPR006128 Adhesion lipoprotein GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00690 Adhesin family signature 257 276 9.5E-27 T 14-09-2016 IPR006128 Adhesion lipoprotein GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 Gene3D G3DSA:3.40.50.1980 17 170 4.1E-49 T 14-09-2016 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00691 Adhesin B signature 67 86 1.8E-20 T 14-09-2016 IPR006129 Adhesin B GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00691 Adhesin B signature 48 66 1.8E-20 T 14-09-2016 IPR006129 Adhesin B GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00691 Adhesin B signature 227 244 1.8E-20 T 14-09-2016 IPR006129 Adhesin B GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00691 Adhesin B signature 23 44 1.8E-20 T 14-09-2016 IPR006129 Adhesin B GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PRINTS PR00691 Adhesin B signature 178 195 1.8E-20 T 14-09-2016 IPR006129 Adhesin B GO:0007155 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 Pfam PF01297 Zinc-uptake complex component A periplasmic 27 287 1.2E-77 T 14-09-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 PANTHER PTHR30477 27 291 1.7E-78 T 14-09-2016 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 SUPERFAMILY SSF53807 20 291 4.66E-83 T 14-09-2016 PAJ_RS01830 3d070a5b87d7817c1bc9441928fe884d 292 Gene3D G3DSA:3.40.50.1980 171 291 6.3E-42 T 14-09-2016 PAJ_RS03050 33ca92a9c20cb4a70cef91aa42b3b71f 305 SUPERFAMILY SSF52540 81 270 3.22E-32 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03050 33ca92a9c20cb4a70cef91aa42b3b71f 305 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 52 276 1.9E-112 T 14-09-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 PAJ_RS03050 33ca92a9c20cb4a70cef91aa42b3b71f 305 Gene3D G3DSA:3.40.50.300 43 291 1.0E-107 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03050 33ca92a9c20cb4a70cef91aa42b3b71f 305 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 52 276 2.7E-112 T 14-09-2016 IPR022488 Polyphosphate kinase-2-related PAJ_RS03050 33ca92a9c20cb4a70cef91aa42b3b71f 305 PIRSF PIRSF028756 16 305 8.2E-133 T 14-09-2016 IPR016898 Polyphosphate kinase 2 PAJ_RS03050 33ca92a9c20cb4a70cef91aa42b3b71f 305 PANTHER PTHR34383:SF1 15 305 5.2E-192 T 14-09-2016 PAJ_RS03050 33ca92a9c20cb4a70cef91aa42b3b71f 305 PANTHER PTHR34383 15 305 5.2E-192 T 14-09-2016 PAJ_RS20770 2c61b324fae4c9a3ebbf86ebe2db11b4 184 Gene3D G3DSA:2.60.40.1090 31 184 1.4E-24 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS20770 2c61b324fae4c9a3ebbf86ebe2db11b4 184 PANTHER PTHR33420 10 184 3.8E-34 T 14-09-2016 PAJ_RS20770 2c61b324fae4c9a3ebbf86ebe2db11b4 184 Pfam PF00419 Fimbrial protein 33 183 2.5E-12 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS20770 2c61b324fae4c9a3ebbf86ebe2db11b4 184 PANTHER PTHR33420:SF10 10 184 3.8E-34 T 14-09-2016 PAJ_RS20770 2c61b324fae4c9a3ebbf86ebe2db11b4 184 SUPERFAMILY SSF49401 31 183 4.03E-24 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS07845 49375f0909865ffa90dc483ee5e52b50 338 PANTHER PTHR26402:SF554 8 182 2.5E-73 T 14-09-2016 PAJ_RS07845 49375f0909865ffa90dc483ee5e52b50 338 SMART SM00448 8 120 6.0E-30 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS07845 49375f0909865ffa90dc483ee5e52b50 338 Gene3D G3DSA:3.40.50.2300 8 124 4.0E-32 T 14-09-2016 PAJ_RS07845 49375f0909865ffa90dc483ee5e52b50 338 Hamap MF_00958 Regulator of RpoS [rssB]. 1 337 53.187 T 14-09-2016 IPR028616 Regulator of RpoS PAJ_RS07845 49375f0909865ffa90dc483ee5e52b50 338 Pfam PF00072 Response regulator receiver domain 10 118 1.3E-28 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS07845 49375f0909865ffa90dc483ee5e52b50 338 SUPERFAMILY SSF52172 8 129 6.26E-33 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS07845 49375f0909865ffa90dc483ee5e52b50 338 PANTHER PTHR26402 8 182 2.5E-73 T 14-09-2016 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 Gene3D G3DSA:1.10.150.200 335 398 5.1E-10 T 14-09-2016 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 Gene3D G3DSA:1.10.150.200 430 462 5.1E-10 T 14-09-2016 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 SMART SM00642 12 480 4.1E-7 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 PANTHER PTHR10357 648 841 3.0E-147 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 Pfam PF00128 Alpha amylase, catalytic domain 26 119 2.3E-18 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 PANTHER PTHR10357 193 348 3.0E-147 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 PANTHER PTHR10357 1 124 3.0E-147 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 Gene3D G3DSA:3.20.20.80 4 96 3.2E-70 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 Gene3D G3DSA:3.20.20.80 652 776 3.2E-70 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 Gene3D G3DSA:3.20.20.80 496 535 3.2E-70 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 Gene3D G3DSA:3.20.20.80 241 314 3.2E-70 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 PANTHER PTHR10357:SF166 648 841 3.0E-147 T 14-09-2016 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 SUPERFAMILY SSF51445 3 414 1.42E-130 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 SUPERFAMILY SSF51445 446 743 1.42E-130 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 Gene3D G3DSA:3.30.1590.10 97 225 6.3E-40 T 14-09-2016 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 Gene3D G3DSA:1.10.10.470 536 645 7.4E-31 T 14-09-2016 IPR013797 Maltooligosyl trehalose synthase, N-terminal MetaCyc: PWY-2661 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 PANTHER PTHR10357:SF166 193 348 3.0E-147 T 14-09-2016 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 PANTHER PTHR10357:SF166 1 124 3.0E-147 T 14-09-2016 PAJ_RS06045 167f793454ac031b22ffac02d1852359 843 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 4 841 2.4E-303 T 14-09-2016 IPR012767 Malto-oligosyltrehalose synthase MetaCyc: PWY-2661 PAJ_RS00255 cb11ba2dede7559e302eb4ec4fd5aeba 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 359 50.502 T 14-09-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 PAJ_RS00255 cb11ba2dede7559e302eb4ec4fd5aeba 363 PANTHER PTHR11835:SF35 1 361 1.7E-199 T 14-09-2016 PAJ_RS00255 cb11ba2dede7559e302eb4ec4fd5aeba 363 SMART SM01329 6 355 4.1E-201 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS00255 cb11ba2dede7559e302eb4ec4fd5aeba 363 PANTHER PTHR11835 1 361 1.7E-199 T 14-09-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PAJ_RS00255 cb11ba2dede7559e302eb4ec4fd5aeba 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 247 266 - T 14-09-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PAJ_RS00255 cb11ba2dede7559e302eb4ec4fd5aeba 363 SUPERFAMILY SSF53659 3 360 3.6E-121 T 14-09-2016 PAJ_RS00255 cb11ba2dede7559e302eb4ec4fd5aeba 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 354 3.0E-135 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS00255 cb11ba2dede7559e302eb4ec4fd5aeba 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 353 1.8E-165 T 14-09-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 PAJ_RS00255 cb11ba2dede7559e302eb4ec4fd5aeba 363 Gene3D G3DSA:3.40.718.10 2 357 4.5E-129 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS14225 6e9337ea7b5da0aeb00307e82baae8c6 362 SMART SM00849 14 193 8.1E-8 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS14225 6e9337ea7b5da0aeb00307e82baae8c6 362 Pfam PF12706 Beta-lactamase superfamily domain 45 139 1.9E-6 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS14225 6e9337ea7b5da0aeb00307e82baae8c6 362 Gene3D G3DSA:3.60.15.10 4 192 3.3E-19 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS14225 6e9337ea7b5da0aeb00307e82baae8c6 362 SUPERFAMILY SSF56281 4 343 6.81E-37 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS02255 2f68a619495c980d2cb4097b9c66b31b 841 PANTHER PTHR30451:SF10 39 841 0.0 T 14-09-2016 PAJ_RS02255 2f68a619495c980d2cb4097b9c66b31b 841 Pfam PF13954 PapC N-terminal domain 44 189 1.5E-35 T 14-09-2016 IPR025885 PapC, N-terminal domain GO:0005515 PAJ_RS02255 2f68a619495c980d2cb4097b9c66b31b 841 PANTHER PTHR30451 39 841 0.0 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS02255 2f68a619495c980d2cb4097b9c66b31b 841 Pfam PF13953 PapC C-terminal domain 767 823 8.3E-15 T 14-09-2016 IPR025949 PapC-like, C-terminal domain PAJ_RS02255 2f68a619495c980d2cb4097b9c66b31b 841 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 322 332 - T 14-09-2016 IPR018030 Fimbrial membrane usher, conserved site PAJ_RS02255 2f68a619495c980d2cb4097b9c66b31b 841 Pfam PF00577 Outer membrane usher protein 206 755 3.5E-178 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS02255 2f68a619495c980d2cb4097b9c66b31b 841 SUPERFAMILY SSF141729 67 180 1.7E-29 T 14-09-2016 PAJ_RS05595 85aebc4422865193b5b125c40d43c874 262 PANTHER PTHR24220 6 258 3.0E-109 T 14-09-2016 PAJ_RS05595 85aebc4422865193b5b125c40d43c874 262 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS05595 85aebc4422865193b5b125c40d43c874 262 SMART SM00382 33 216 3.0E-19 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS05595 85aebc4422865193b5b125c40d43c874 262 Gene3D G3DSA:3.40.50.300 2 222 3.9E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05595 85aebc4422865193b5b125c40d43c874 262 Pfam PF00005 ABC transporter 24 166 2.1E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS05595 85aebc4422865193b5b125c40d43c874 262 PANTHER PTHR24220:SF361 6 258 3.0E-109 T 14-09-2016 PAJ_RS05595 85aebc4422865193b5b125c40d43c874 262 SUPERFAMILY SSF52540 4 226 7.18E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05595 85aebc4422865193b5b125c40d43c874 262 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 24 254 2.7E-99 T 14-09-2016 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 Pfam PF03379 CcmB protein 3 216 5.4E-92 T 14-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 5 215 3.6E-95 T 14-09-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 75 98 1.1E-70 T 14-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 1.1E-70 T 14-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 52 69 1.1E-70 T 14-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 26 47 1.1E-70 T 14-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 100 118 1.1E-70 T 14-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 1.1E-70 T 14-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 PANTHER PTHR30070 1 219 1.8E-72 T 14-09-2016 PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 PANTHER PTHR30070:SF1 1 219 1.8E-72 T 14-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10980 33c39544a0cdd0c4c999c4e317f86eaa 219 PIRSF PIRSF002764 1 219 1.4E-84 T 14-09-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria PAJ_RS13385 9e35be144f41342065cec510baaa1cc4 291 SUPERFAMILY SSF50182 114 179 1.05E-16 T 14-09-2016 IPR010920 LSM domain PAJ_RS13385 9e35be144f41342065cec510baaa1cc4 291 Pfam PF00924 Mechanosensitive ion channel 72 268 4.0E-53 T 14-09-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PAJ_RS13385 9e35be144f41342065cec510baaa1cc4 291 Pfam PF05552 Conserved TM helix 16 64 9.8E-13 T 14-09-2016 IPR008910 Conserved TM helix PAJ_RS13385 9e35be144f41342065cec510baaa1cc4 291 Gene3D G3DSA:3.30.70.100 182 266 9.4E-25 T 14-09-2016 PAJ_RS13385 9e35be144f41342065cec510baaa1cc4 291 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 143 177 - T 14-09-2016 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 PAJ_RS13385 9e35be144f41342065cec510baaa1cc4 291 Gene3D G3DSA:2.30.30.60 129 178 2.1E-18 T 14-09-2016 PAJ_RS13385 9e35be144f41342065cec510baaa1cc4 291 SUPERFAMILY SSF82861 28 112 1.7E-17 T 14-09-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 PAJ_RS13385 9e35be144f41342065cec510baaa1cc4 291 SUPERFAMILY SSF82689 181 279 1.57E-29 T 14-09-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PAJ_RS13385 9e35be144f41342065cec510baaa1cc4 291 PANTHER PTHR30221:SF7 16 288 4.0E-108 T 14-09-2016 PAJ_RS13385 9e35be144f41342065cec510baaa1cc4 291 PANTHER PTHR30221 16 288 4.0E-108 T 14-09-2016 PAJ_RS07785 ca8d47e32a85c6f7bd1a1e39e6f11ef7 337 SMART SM00382 48 254 3.4E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS07785 ca8d47e32a85c6f7bd1a1e39e6f11ef7 337 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 248 330 3.4E-25 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS07785 ca8d47e32a85c6f7bd1a1e39e6f11ef7 337 PANTHER PTHR24220:SF535 21 330 2.9E-161 T 14-09-2016 PAJ_RS07785 ca8d47e32a85c6f7bd1a1e39e6f11ef7 337 Gene3D G3DSA:3.40.50.300 14 276 6.0E-74 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07785 ca8d47e32a85c6f7bd1a1e39e6f11ef7 337 Pfam PF00005 ABC transporter 40 196 8.5E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS07785 ca8d47e32a85c6f7bd1a1e39e6f11ef7 337 SUPERFAMILY SSF52540 49 317 5.33E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07785 ca8d47e32a85c6f7bd1a1e39e6f11ef7 337 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS07785 ca8d47e32a85c6f7bd1a1e39e6f11ef7 337 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 248 312 2.3E-21 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS07785 ca8d47e32a85c6f7bd1a1e39e6f11ef7 337 PANTHER PTHR24220 21 330 2.9E-161 T 14-09-2016 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 284 3.9E-11 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 5 550 1.1E-224 T 14-09-2016 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16|UniPathway: UPA00145 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 Gene3D G3DSA:3.30.420.40 4 285 5.8E-33 T 14-09-2016 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 SUPERFAMILY SSF53067 7 284 6.04E-23 T 14-09-2016 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 PANTHER PTHR10196 1 561 0.0 T 14-09-2016 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 Hamap MF_00520 Ribulokinase [araB]. 4 561 52.088 T 14-09-2016 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16|UniPathway: UPA00145 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 294 504 1.3E-37 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 PANTHER PTHR10196:SF62 1 561 0.0 T 14-09-2016 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 Gene3D G3DSA:3.30.420.40 289 546 3.4E-45 T 14-09-2016 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 PIRSF PIRSF000538 4 557 1.6E-39 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS06410 a745ce4b8bb42e5f2e1eddf83904caed 561 SUPERFAMILY SSF53067 288 548 7.22E-44 T 14-09-2016 PAJ_RS06200 ce0e7fcd66f434f69c0369bc648d1dd1 234 PIRSF PIRSF006102 1 219 9.3E-76 T 14-09-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 PAJ_RS06200 ce0e7fcd66f434f69c0369bc648d1dd1 234 Hamap MF_00478 Electron transport complex subunit RsxE [rsxE]. 1 210 26.934 T 14-09-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 PAJ_RS06200 ce0e7fcd66f434f69c0369bc648d1dd1 234 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 7 209 1.1E-80 T 14-09-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 PAJ_RS06200 ce0e7fcd66f434f69c0369bc648d1dd1 234 PANTHER PTHR30586:SF0 1 220 1.8E-131 T 14-09-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 PAJ_RS06200 ce0e7fcd66f434f69c0369bc648d1dd1 234 PANTHER PTHR30586 1 220 1.8E-131 T 14-09-2016 PAJ_RS06200 ce0e7fcd66f434f69c0369bc648d1dd1 234 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 199 1.4E-60 T 14-09-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 PAJ_RS09520 c03fb4337efd790c7ae7af7a53d65414 489 Gene3D G3DSA:3.40.309.10 273 449 7.3E-55 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS09520 c03fb4337efd790c7ae7af7a53d65414 489 PANTHER PTHR11699 8 489 1.1E-182 T 14-09-2016 PAJ_RS09520 c03fb4337efd790c7ae7af7a53d65414 489 Pfam PF00171 Aldehyde dehydrogenase family 23 485 2.6E-146 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS09520 c03fb4337efd790c7ae7af7a53d65414 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 257 264 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS09520 c03fb4337efd790c7ae7af7a53d65414 489 SUPERFAMILY SSF53720 9 488 7.72E-146 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS09520 c03fb4337efd790c7ae7af7a53d65414 489 Gene3D G3DSA:3.40.605.10 11 272 6.8E-88 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS01655 82d5f6f2d29ef84a5004a0595dc19916 506 Gene3D G3DSA:3.40.309.10 277 469 8.3E-61 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS01655 82d5f6f2d29ef84a5004a0595dc19916 506 PANTHER PTHR11699 1 506 0.0 T 14-09-2016 PAJ_RS01655 82d5f6f2d29ef84a5004a0595dc19916 506 PANTHER PTHR11699:SF97 1 506 0.0 T 14-09-2016 PAJ_RS01655 82d5f6f2d29ef84a5004a0595dc19916 506 Gene3D G3DSA:3.40.605.10 19 276 3.9E-90 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS01655 82d5f6f2d29ef84a5004a0595dc19916 506 SUPERFAMILY SSF53720 12 497 7.59E-159 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS01655 82d5f6f2d29ef84a5004a0595dc19916 506 Pfam PF00171 Aldehyde dehydrogenase family 34 493 2.0E-160 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS01655 82d5f6f2d29ef84a5004a0595dc19916 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS01655 82d5f6f2d29ef84a5004a0595dc19916 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS03655 e8de7834123226ecf2edbf8929f6b3b7 333 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 13 319 1.1E-119 T 14-09-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 PAJ_RS03655 e8de7834123226ecf2edbf8929f6b3b7 333 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 322 8.3E-105 T 14-09-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 PAJ_RS03655 e8de7834123226ecf2edbf8929f6b3b7 333 PANTHER PTHR30160 1 323 5.3E-102 T 14-09-2016 PAJ_RS03655 e8de7834123226ecf2edbf8929f6b3b7 333 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 325 41.836 T 14-09-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 PAJ_RS03655 e8de7834123226ecf2edbf8929f6b3b7 333 Gene3D G3DSA:3.40.50.300 187 195 4.9E-8 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03655 e8de7834123226ecf2edbf8929f6b3b7 333 Gene3D G3DSA:3.40.50.300 45 108 4.9E-8 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03655 e8de7834123226ecf2edbf8929f6b3b7 333 PANTHER PTHR30160:SF13 1 323 5.3E-102 T 14-09-2016 PAJ_RS03655 e8de7834123226ecf2edbf8929f6b3b7 333 SUPERFAMILY SSF52540 46 181 1.33E-13 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17825 53d40babecd394b83acede32705b903d 100 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 7 99 2.4E-35 T 14-09-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS17825 53d40babecd394b83acede32705b903d 100 PANTHER PTHR34382:SF2 1 100 7.1E-39 T 14-09-2016 PAJ_RS17825 53d40babecd394b83acede32705b903d 100 SUPERFAMILY SSF46973 2 100 2.75E-35 T 14-09-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS17825 53d40babecd394b83acede32705b903d 100 PANTHER PTHR34382 1 100 7.1E-39 T 14-09-2016 PAJ_RS17825 53d40babecd394b83acede32705b903d 100 Gene3D G3DSA:1.20.58.80 2 100 1.8E-39 T 14-09-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS17825 53d40babecd394b83acede32705b903d 100 PIRSF PIRSF000699 1 100 5.7E-35 T 14-09-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 PANTHER PTHR11624:SF20 241 621 0.0 T 14-09-2016 PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 SUPERFAMILY SSF52518 243 381 9.06E-76 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 SUPERFAMILY SSF52518 14 199 9.06E-76 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 SMART SM00861 319 484 1.5E-66 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 PANTHER PTHR11624 24 218 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 PANTHER PTHR11624 241 621 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 SUPERFAMILY SSF52922 492 619 1.96E-30 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 12 282 6.0E-116 T 14-09-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 620 45.585 T 14-09-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 14 620 3.3E-303 T 14-09-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 Gene3D G3DSA:3.40.50.920 494 619 6.2E-34 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 Pfam PF02779 Transketolase, pyrimidine binding domain 320 479 8.1E-38 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 SUPERFAMILY SSF52518 318 504 5.61E-57 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 Gene3D G3DSA:3.40.50.970 242 334 4.9E-74 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 Gene3D G3DSA:3.40.50.970 26 201 4.9E-74 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 Pfam PF02780 Transketolase, C-terminal domain 495 611 1.1E-26 T 14-09-2016 IPR033248 Transketolase, C-terminal domain PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 14-09-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 Gene3D G3DSA:3.40.50.970 335 484 5.0E-34 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS01615 ed774acf850872d08aee9912159a1610 621 PANTHER PTHR11624:SF20 24 218 0.0 T 14-09-2016 PAJ_RS17680 3c07738ec34d642495f3f66b7d6097fb 347 PIRSF PIRSF002756 1 338 6.3E-106 T 14-09-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 PAJ_RS17680 3c07738ec34d642495f3f66b7d6097fb 347 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 335 3.3E-126 T 14-09-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 PAJ_RS17680 3c07738ec34d642495f3f66b7d6097fb 347 SUPERFAMILY SSF53850 29 335 1.15E-94 T 14-09-2016 PAJ_RS17680 3c07738ec34d642495f3f66b7d6097fb 347 Gene3D G3DSA:3.40.190.10 181 337 8.3E-31 T 14-09-2016 PAJ_RS17680 3c07738ec34d642495f3f66b7d6097fb 347 Gene3D G3DSA:3.40.190.10 28 177 3.5E-56 T 14-09-2016 PAJ_RS17680 3c07738ec34d642495f3f66b7d6097fb 347 PANTHER PTHR30570:SF0 4 344 1.1E-130 T 14-09-2016 PAJ_RS17680 3c07738ec34d642495f3f66b7d6097fb 347 Pfam PF12849 PBP superfamily domain 25 307 1.5E-58 T 14-09-2016 IPR024370 PBP domain PAJ_RS17680 3c07738ec34d642495f3f66b7d6097fb 347 PANTHER PTHR30570 4 344 1.1E-130 T 14-09-2016 PAJ_RS14735 415d9eef02e0c86931f096c564a9ce78 302 PANTHER PTHR35862 1 302 4.3E-136 T 14-09-2016 PAJ_RS14735 415d9eef02e0c86931f096c564a9ce78 302 PIRSF PIRSF020481 1 302 5.2E-131 T 14-09-2016 IPR014507 Baseplate assembly protein J, predicted PAJ_RS14735 415d9eef02e0c86931f096c564a9ce78 302 PANTHER PTHR35862:SF1 1 302 4.3E-136 T 14-09-2016 PAJ_RS14735 415d9eef02e0c86931f096c564a9ce78 302 Pfam PF04865 Baseplate J-like protein 118 261 2.1E-24 T 14-09-2016 IPR006949 Baseplate protein J-like PAJ_RS11980 199c796f977086ef6d291e801f0b5669 223 ProDom PD117379 LIPOPROTEIN YFHG HELIX ALPHA REGULATOR MEMBRANE TRANSCRIPTIONAL FAMILIIY EBP TWO-COMPONENT 11 214 4.0E-35 T 14-09-2016 PAJ_RS11980 199c796f977086ef6d291e801f0b5669 223 Pfam PF13942 YfhG lipoprotein 39 207 1.6E-70 T 14-09-2016 IPR025262 Quorum-sensing regulator protein G PAJ_RS02965 c9262ec3922d3bc5eb4db95d73f4dcc3 228 Pfam PF13500 AAA domain 5 208 7.2E-41 T 14-09-2016 PAJ_RS02965 c9262ec3922d3bc5eb4db95d73f4dcc3 228 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 208 30.4 T 14-09-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS02965 c9262ec3922d3bc5eb4db95d73f4dcc3 228 Gene3D G3DSA:3.40.50.300 3 213 8.3E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02965 c9262ec3922d3bc5eb4db95d73f4dcc3 228 PIRSF PIRSF006755 1 224 1.2E-80 T 14-09-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS02965 c9262ec3922d3bc5eb4db95d73f4dcc3 228 SUPERFAMILY SSF52540 3 207 9.44E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02965 c9262ec3922d3bc5eb4db95d73f4dcc3 228 PANTHER PTHR21343 2 224 3.2E-110 T 14-09-2016 PAJ_RS02965 c9262ec3922d3bc5eb4db95d73f4dcc3 228 PANTHER PTHR21343:SF13 2 224 3.2E-110 T 14-09-2016 PAJ_RS02965 c9262ec3922d3bc5eb4db95d73f4dcc3 228 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 175 1.2E-61 T 14-09-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS16540 012d09a21f2a290c3489a079dd1274f1 328 SUPERFAMILY SSF52540 5 253 2.61E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16540 012d09a21f2a290c3489a079dd1274f1 328 Pfam PF00005 ABC transporter 25 184 1.5E-24 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS16540 012d09a21f2a290c3489a079dd1274f1 328 PANTHER PTHR24220:SF574 7 324 1.7E-122 T 14-09-2016 PAJ_RS16540 012d09a21f2a290c3489a079dd1274f1 328 SMART SM00382 34 234 9.9E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16540 012d09a21f2a290c3489a079dd1274f1 328 Gene3D G3DSA:3.40.50.300 5 257 6.1E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16540 012d09a21f2a290c3489a079dd1274f1 328 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS16540 012d09a21f2a290c3489a079dd1274f1 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 300 7.8E-14 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS16540 012d09a21f2a290c3489a079dd1274f1 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 320 1.4E-21 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS16540 012d09a21f2a290c3489a079dd1274f1 328 PANTHER PTHR24220 7 324 1.7E-122 T 14-09-2016 PAJ_RS17185 97f7e69937a63cf4071b9e503b43fcc3 143 Pfam PF00581 Rhodanese-like domain 43 133 3.5E-18 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS17185 97f7e69937a63cf4071b9e503b43fcc3 143 PANTHER PTHR12231:SF138 19 143 9.9E-43 T 14-09-2016 PAJ_RS17185 97f7e69937a63cf4071b9e503b43fcc3 143 SUPERFAMILY SSF52821 16 142 1.83E-33 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS17185 97f7e69937a63cf4071b9e503b43fcc3 143 SMART SM00450 40 138 2.5E-22 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS17185 97f7e69937a63cf4071b9e503b43fcc3 143 Gene3D G3DSA:3.40.250.10 21 142 5.8E-30 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS17185 97f7e69937a63cf4071b9e503b43fcc3 143 PANTHER PTHR12231 19 143 9.9E-43 T 14-09-2016 PAJ_RS04285 d11e91512a4acabf4b2863a26991f993 142 Gene3D G3DSA:1.10.10.10 5 140 6.4E-33 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04285 d11e91512a4acabf4b2863a26991f993 142 PANTHER PTHR33164 1 136 2.6E-23 T 14-09-2016 PAJ_RS04285 d11e91512a4acabf4b2863a26991f993 142 SMART SM00347 24 125 3.9E-23 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS04285 d11e91512a4acabf4b2863a26991f993 142 PANTHER PTHR33164:SF16 1 136 2.6E-23 T 14-09-2016 PAJ_RS04285 d11e91512a4acabf4b2863a26991f993 142 Pfam PF12802 MarR family 29 88 1.5E-10 T 14-09-2016 PAJ_RS04285 d11e91512a4acabf4b2863a26991f993 142 SUPERFAMILY SSF46785 5 139 1.65E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04285 d11e91512a4acabf4b2863a26991f993 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 3.3E-11 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS04285 d11e91512a4acabf4b2863a26991f993 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 3.3E-11 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS04285 d11e91512a4acabf4b2863a26991f993 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 3.3E-11 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS04285 d11e91512a4acabf4b2863a26991f993 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 3.3E-11 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS12020 6e0b11e77be303986f81a0263f11cc26 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 25.682 T 14-09-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS12020 6e0b11e77be303986f81a0263f11cc26 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 126 1.0E-35 T 14-09-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS12020 6e0b11e77be303986f81a0263f11cc26 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 126 2.0E-52 T 14-09-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS12020 6e0b11e77be303986f81a0263f11cc26 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 125 5.0E-36 T 14-09-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS12020 6e0b11e77be303986f81a0263f11cc26 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 121 3.4E-24 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS12020 6e0b11e77be303986f81a0263f11cc26 126 Gene3D G3DSA:3.90.470.20 1 125 1.6E-41 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS12020 6e0b11e77be303986f81a0263f11cc26 126 SUPERFAMILY SSF56214 3 125 1.2E-29 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS02080 a66c6a4cd6bc902953c7568ab0fe2c9f 579 PANTHER PTHR33908 31 412 2.6E-24 T 14-09-2016 PAJ_RS02080 a66c6a4cd6bc902953c7568ab0fe2c9f 579 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 104 261 2.8E-12 T 14-09-2016 PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 246 2.7E-59 T 14-09-2016 PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.4E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.4E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.4E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 1.4E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.4E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.4E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PANTHER PTHR24322 156 187 7.3E-43 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PANTHER PTHR24322 10 140 7.3E-43 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.6E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 4.6E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 4.6E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 SUPERFAMILY SSF51735 4 246 1.1E-74 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS08760 c7bb14abdc182716b20076e34bec896e 247 Gene3D G3DSA:3.40.50.720 3 246 3.6E-75 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS03180 f8fe401568158fcabb9e0d600e4361c5 398 SMART SM00922 176 273 3.3E-27 T 14-09-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PAJ_RS03180 f8fe401568158fcabb9e0d600e4361c5 398 SUPERFAMILY SSF51604 144 384 1.19E-71 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS03180 f8fe401568158fcabb9e0d600e4361c5 398 PANTHER PTHR13794:SF58 24 384 5.3E-126 T 14-09-2016 PAJ_RS03180 f8fe401568158fcabb9e0d600e4361c5 398 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 223 254 - T 14-09-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 PAJ_RS03180 f8fe401568158fcabb9e0d600e4361c5 398 Gene3D G3DSA:3.30.390.10 27 159 6.9E-38 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS03180 f8fe401568158fcabb9e0d600e4361c5 398 SUPERFAMILY SSF54826 27 158 2.06E-25 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS03180 f8fe401568158fcabb9e0d600e4361c5 398 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 60 156 5.4E-13 T 14-09-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PAJ_RS03180 f8fe401568158fcabb9e0d600e4361c5 398 Gene3D G3DSA:3.20.20.120 160 380 3.6E-74 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS03180 f8fe401568158fcabb9e0d600e4361c5 398 PANTHER PTHR13794 24 384 5.3E-126 T 14-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PAJ_RS03180 f8fe401568158fcabb9e0d600e4361c5 398 Pfam PF13378 Enolase C-terminal domain-like 187 383 6.1E-60 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 Pfam PF00710 Asparaginase, N-terminal 5 188 5.6E-64 T 14-09-2016 IPR027474 L-asparaginase, N-terminal PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 SUPERFAMILY SSF53774 3 335 8.64E-111 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 3 335 6.7E-129 T 14-09-2016 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 PANTHER PTHR11707 1 337 1.6E-254 T 14-09-2016 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 PIRSF PIRSF500176 2 332 3.4E-115 T 14-09-2016 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 Gene3D G3DSA:3.40.50.1170 4 199 2.4E-77 T 14-09-2016 IPR027474 L-asparaginase, N-terminal PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 14-09-2016 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 14-09-2016 IPR027475 Asparaginase/glutaminase, active site 2 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 Gene3D G3DSA:3.40.50.40 211 335 1.3E-51 T 14-09-2016 IPR027473 L-asparaginase, C-terminal domain PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 PANTHER PTHR11707:SF31 1 337 1.6E-254 T 14-09-2016 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 SMART SM00870 5 323 5.9E-138 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 PIRSF PIRSF001220 1 334 1.5E-95 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 5.6E-17 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 5.6E-17 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PAJ_RS07915 8a32cec5f9d60856664cfe4560997e3e 337 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 5.6E-17 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PAJ_RS03150 1652f94f1d724fb14889a1699cbec248 187 Pfam PF13560 Helix-turn-helix domain 9 64 2.0E-12 T 14-09-2016 PAJ_RS03150 1652f94f1d724fb14889a1699cbec248 187 Gene3D G3DSA:2.60.120.10 83 185 1.6E-11 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS03150 1652f94f1d724fb14889a1699cbec248 187 PANTHER PTHR10245:SF21 1 184 1.3E-53 T 14-09-2016 PAJ_RS03150 1652f94f1d724fb14889a1699cbec248 187 Gene3D G3DSA:1.10.260.40 4 77 1.7E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS03150 1652f94f1d724fb14889a1699cbec248 187 SUPERFAMILY SSF51182 54 184 4.66E-16 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS03150 1652f94f1d724fb14889a1699cbec248 187 SMART SM00530 13 68 1.7E-13 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS03150 1652f94f1d724fb14889a1699cbec248 187 PANTHER PTHR10245 1 184 1.3E-53 T 14-09-2016 PAJ_RS03150 1652f94f1d724fb14889a1699cbec248 187 SUPERFAMILY SSF47413 7 73 1.24E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS09810 132ba962ec6044fb7cc138a490b25521 245 SUPERFAMILY SSF51366 1 244 1.28E-66 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PAJ_RS09810 132ba962ec6044fb7cc138a490b25521 245 PANTHER PTHR21235 1 244 6.9E-110 T 14-09-2016 PAJ_RS09810 132ba962ec6044fb7cc138a490b25521 245 Pfam PF00977 Histidine biosynthesis protein 1 234 7.3E-76 T 14-09-2016 IPR006062 Histidine biosynthesis GO:0000105 PAJ_RS09810 132ba962ec6044fb7cc138a490b25521 245 PANTHER PTHR21235:SF15 1 244 6.9E-110 T 14-09-2016 PAJ_RS09810 132ba962ec6044fb7cc138a490b25521 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 237 2.5E-79 T 14-09-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 PAJ_RS09810 132ba962ec6044fb7cc138a490b25521 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.485 T 14-09-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 PAJ_RS09810 132ba962ec6044fb7cc138a490b25521 245 Gene3D G3DSA:3.20.20.70 1 243 3.5E-78 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS13915 60514e59748b55fe5974471d17ae9e27 452 Pfam PF07693 KAP family P-loop domain 33 278 1.2E-32 T 14-09-2016 IPR011646 KAP family P-loop domain PAJ_RS13915 60514e59748b55fe5974471d17ae9e27 452 SUPERFAMILY SSF52540 173 260 1.26E-11 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13915 60514e59748b55fe5974471d17ae9e27 452 SUPERFAMILY SSF52540 20 94 1.26E-11 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13915 60514e59748b55fe5974471d17ae9e27 452 Gene3D G3DSA:3.40.50.300 17 120 3.0E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13915 60514e59748b55fe5974471d17ae9e27 452 Gene3D G3DSA:3.40.50.300 172 244 3.0E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18590 875a4523e347b9408569f5b88dfaa524 178 PANTHER PTHR38030 1 177 8.6E-94 T 14-09-2016 PAJ_RS18590 875a4523e347b9408569f5b88dfaa524 178 PANTHER PTHR38030:SF2 1 177 8.6E-94 T 14-09-2016 PAJ_RS18590 875a4523e347b9408569f5b88dfaa524 178 Pfam PF12724 Flavodoxin domain 4 151 1.2E-52 T 14-09-2016 IPR026816 Flavodoxin domain PAJ_RS18590 875a4523e347b9408569f5b88dfaa524 178 Gene3D G3DSA:3.40.50.360 104 174 1.0E-25 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS18590 875a4523e347b9408569f5b88dfaa524 178 Gene3D G3DSA:3.40.50.360 2 72 1.0E-25 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS18590 875a4523e347b9408569f5b88dfaa524 178 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 14-09-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 PAJ_RS18590 875a4523e347b9408569f5b88dfaa524 178 SUPERFAMILY SSF52218 1 172 1.17E-34 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS20435 73947213b739930ba0a57e4c17c40b14 117 PIRSF PIRSF030962 1 117 3.7E-54 T 14-09-2016 IPR016962 Dehydrase, ECs4332, predicted PAJ_RS20435 73947213b739930ba0a57e4c17c40b14 117 Pfam PF07977 FabA-like domain 20 89 6.8E-7 T 14-09-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 PAJ_RS20435 73947213b739930ba0a57e4c17c40b14 117 SUPERFAMILY SSF54637 11 102 3.54E-17 T 14-09-2016 IPR029069 HotDog domain PAJ_RS20435 73947213b739930ba0a57e4c17c40b14 117 Gene3D G3DSA:3.10.129.10 13 102 3.9E-17 T 14-09-2016 IPR029069 HotDog domain PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 450 470 1.6E-50 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 64 87 1.6E-50 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 368 392 1.6E-50 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 392 415 1.6E-50 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 336 357 1.6E-50 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 106 126 1.6E-50 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 435 450 1.6E-50 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PANTHER PTHR30386 183 471 2.6E-82 T 14-09-2016 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 SUPERFAMILY SSF111369 93 161 1.31E-7 T 14-09-2016 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 Pfam PF13437 HlyD family secretion protein 324 436 3.0E-19 T 14-09-2016 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 ProSitePatterns PS00543 HlyD family secretion proteins signature. 435 457 - T 14-09-2016 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 Pfam PF13533 Biotin-lipoyl like 97 140 8.6E-10 T 14-09-2016 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 Gene3D G3DSA:2.40.50.100 116 172 8.8E-4 T 14-09-2016 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PANTHER PTHR30386 22 147 2.6E-82 T 14-09-2016 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 60 471 4.1E-110 T 14-09-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 Gene3D G3DSA:2.40.50.100 321 356 2.0E-16 T 14-09-2016 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 Gene3D G3DSA:2.40.50.100 96 115 2.0E-16 T 14-09-2016 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PANTHER PTHR30386:SF8 183 471 2.6E-82 T 14-09-2016 PAJ_RS06975 711398b0aab3ffc8d9334a2db3bc5501 471 PANTHER PTHR30386:SF8 22 147 2.6E-82 T 14-09-2016 PAJ_RS19990 24f82e1ba181a2ca35ddf8f051cc3a60 712 SUPERFAMILY SSF51998 121 687 1.46E-194 T 14-09-2016 PAJ_RS19990 24f82e1ba181a2ca35ddf8f051cc3a60 712 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 116 705 4.4E-201 T 14-09-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 PAJ_RS19990 24f82e1ba181a2ca35ddf8f051cc3a60 712 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 705 3.6E-180 T 14-09-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 PAJ_RS19990 24f82e1ba181a2ca35ddf8f051cc3a60 712 ProSitePatterns PS00850 Glycine radical domain signature. 676 684 - T 14-09-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site PAJ_RS19990 24f82e1ba181a2ca35ddf8f051cc3a60 712 Gene3D G3DSA:3.20.70.20 124 685 8.8E-184 T 14-09-2016 PAJ_RS19990 24f82e1ba181a2ca35ddf8f051cc3a60 712 PANTHER PTHR21075 1 711 1.9E-294 T 14-09-2016 PAJ_RS19990 24f82e1ba181a2ca35ddf8f051cc3a60 712 Pfam PF03477 ATP cone domain 4 89 5.7E-18 T 14-09-2016 IPR005144 ATP-cone domain PAJ_RS09545 730e464c9c81c4074774387950624873 494 SUPERFAMILY SSF52540 5 229 9.38E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09545 730e464c9c81c4074774387950624873 494 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS09545 730e464c9c81c4074774387950624873 494 Pfam PF00005 ABC transporter 21 170 5.6E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09545 730e464c9c81c4074774387950624873 494 Pfam PF00005 ABC transporter 270 424 2.4E-22 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09545 730e464c9c81c4074774387950624873 494 Gene3D G3DSA:3.40.50.300 5 233 2.5E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09545 730e464c9c81c4074774387950624873 494 Gene3D G3DSA:3.40.50.300 266 485 5.4E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09545 730e464c9c81c4074774387950624873 494 PANTHER PTHR24220 7 379 3.6E-170 T 14-09-2016 PAJ_RS09545 730e464c9c81c4074774387950624873 494 SUPERFAMILY SSF52540 268 483 9.67E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09545 730e464c9c81c4074774387950624873 494 SMART SM00382 278 473 1.1E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09545 730e464c9c81c4074774387950624873 494 SMART SM00382 30 218 1.5E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09545 730e464c9c81c4074774387950624873 494 PANTHER PTHR24220:SF416 7 379 3.6E-170 T 14-09-2016 PAJ_RS15800 c71ad2df961453e98db1f39c1b612329 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 20.378 T 14-09-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15800 c71ad2df961453e98db1f39c1b612329 104 SUPERFAMILY SSF50104 4 100 2.32E-33 T 14-09-2016 IPR008991 Translation protein SH3-like domain PAJ_RS15800 c71ad2df961453e98db1f39c1b612329 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 14-09-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15800 c71ad2df961453e98db1f39c1b612329 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 9.4E-40 T 14-09-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15800 c71ad2df961453e98db1f39c1b612329 104 SMART SM00739 4 31 5.5E-4 T 14-09-2016 IPR005824 KOW PAJ_RS15800 c71ad2df961453e98db1f39c1b612329 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 6.4E-24 T 14-09-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15800 c71ad2df961453e98db1f39c1b612329 104 Gene3D G3DSA:2.30.30.30 3 92 7.9E-22 T 14-09-2016 IPR014722 Ribosomal protein L2 domain 2 PAJ_RS15800 c71ad2df961453e98db1f39c1b612329 104 PANTHER PTHR12903 4 103 1.0E-49 T 14-09-2016 PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 Gene3D G3DSA:3.20.20.80 147 566 8.2E-111 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 SUPERFAMILY SSF81296 5 142 5.6E-47 T 14-09-2016 IPR014756 Immunoglobulin E-set PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 5 635 2.2E-278 T 14-09-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 9 95 3.1E-21 T 14-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 PANTHER PTHR10357:SF152 1 627 0.0 T 14-09-2016 PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 Hamap MF_01248 Glycogen debranching enzyme [glgX]. 1 657 66.528 T 14-09-2016 IPR022844 Glycogen debranching enzyme, bacterial GO:0004553|GO:0005977 UniPathway: UPA00165 PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 SUPERFAMILY SSF51445 128 463 1.99E-129 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 SUPERFAMILY SSF51445 492 565 1.99E-129 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 Gene3D G3DSA:2.60.40.10 5 146 1.6E-55 T 14-09-2016 IPR013783 Immunoglobulin-like fold PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 PANTHER PTHR10357 1 627 0.0 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 Pfam PF00128 Alpha amylase, catalytic domain 294 523 2.0E-5 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 Pfam PF00128 Alpha amylase, catalytic domain 183 273 1.1E-8 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS16240 35836f34c56775c6361d33b80ed0d45f 658 SMART SM00642 128 558 3.3E-7 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 Gene3D G3DSA:3.40.50.300 11 153 1.2E-33 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 Pfam PF12002 MgsA AAA+ ATPase C terminal 268 434 7.6E-64 T 14-09-2016 IPR021886 MgsA AAA+ ATPase C-terminal PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 Gene3D G3DSA:1.20.272.10 249 347 5.5E-42 T 14-09-2016 PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 SMART SM00382 49 165 1.3E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 SUPERFAMILY SSF48019 252 434 5.95E-71 T 14-09-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 PANTHER PTHR13779 11 447 6.6E-197 T 14-09-2016 PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 Pfam PF16193 AAA C-terminal domain 189 267 2.9E-21 T 14-09-2016 IPR032423 AAA ATPase, C-terminal domain PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 Gene3D G3DSA:1.10.8.60 154 242 2.8E-8 T 14-09-2016 PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 16 138 6.8E-16 T 14-09-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 Gene3D G3DSA:1.10.3710.10 348 445 7.9E-34 T 14-09-2016 PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 PANTHER PTHR13779:SF7 11 447 6.6E-197 T 14-09-2016 PAJ_RS03585 10ba26f3a99238435409d6eea9acd463 447 SUPERFAMILY SSF52540 7 234 7.2E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03510 2aae98da21a98dc744863a20f83ad0a0 371 Gene3D G3DSA:3.40.640.10 14 263 4.8E-83 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS03510 2aae98da21a98dc744863a20f83ad0a0 371 PANTHER PTHR10289 15 351 4.2E-147 T 14-09-2016 PAJ_RS03510 2aae98da21a98dc744863a20f83ad0a0 371 PIRSF PIRSF017617 12 361 2.6E-127 T 14-09-2016 IPR023603 Threonine aldolase PAJ_RS03510 2aae98da21a98dc744863a20f83ad0a0 371 SUPERFAMILY SSF53383 20 351 1.33E-106 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS03510 2aae98da21a98dc744863a20f83ad0a0 371 PANTHER PTHR10289:SF5 15 351 4.2E-147 T 14-09-2016 PAJ_RS03510 2aae98da21a98dc744863a20f83ad0a0 371 Gene3D G3DSA:3.90.1150.10 264 351 2.8E-21 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS03510 2aae98da21a98dc744863a20f83ad0a0 371 Pfam PF01212 Beta-eliminating lyase 21 300 1.3E-88 T 14-09-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 PAJ_RS01795 7d3d3300cec7228aeb22c319d2554aeb 103 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 7 86 4.0E-27 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PAJ_RS01795 7d3d3300cec7228aeb22c319d2554aeb 103 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 6 68 2.3E-14 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PAJ_RS01795 7d3d3300cec7228aeb22c319d2554aeb 103 Gene3D G3DSA:1.10.10.10 5 90 4.1E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01795 7d3d3300cec7228aeb22c319d2554aeb 103 SUPERFAMILY SSF46767 5 87 1.96E-26 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PAJ_RS01795 7d3d3300cec7228aeb22c319d2554aeb 103 PANTHER PTHR10815 1 102 1.2E-51 T 14-09-2016 PAJ_RS01795 7d3d3300cec7228aeb22c319d2554aeb 103 PANTHER PTHR10815:SF2 1 102 1.2E-51 T 14-09-2016 PAJ_RS20650 44046f8048595b6cbf0c5dd4b0348bb5 763 Pfam PF00884 Sulfatase 162 447 1.9E-20 T 14-09-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PAJ_RS20650 44046f8048595b6cbf0c5dd4b0348bb5 763 PANTHER PTHR10342:SF236 514 555 1.0E-65 T 14-09-2016 PAJ_RS20650 44046f8048595b6cbf0c5dd4b0348bb5 763 PANTHER PTHR10342:SF236 726 750 1.0E-65 T 14-09-2016 PAJ_RS20650 44046f8048595b6cbf0c5dd4b0348bb5 763 PANTHER PTHR10342:SF236 156 491 1.0E-65 T 14-09-2016 PAJ_RS20650 44046f8048595b6cbf0c5dd4b0348bb5 763 PANTHER PTHR10342 514 555 1.0E-65 T 14-09-2016 PAJ_RS20650 44046f8048595b6cbf0c5dd4b0348bb5 763 PANTHER PTHR10342 726 750 1.0E-65 T 14-09-2016 PAJ_RS20650 44046f8048595b6cbf0c5dd4b0348bb5 763 SUPERFAMILY SSF53649 162 461 6.11E-29 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PAJ_RS20650 44046f8048595b6cbf0c5dd4b0348bb5 763 PANTHER PTHR10342 156 491 1.0E-65 T 14-09-2016 PAJ_RS20650 44046f8048595b6cbf0c5dd4b0348bb5 763 Gene3D G3DSA:3.40.720.10 162 453 1.1E-21 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PAJ_RS06190 e42609c0d83c490444105289e8c070db 232 Gene3D G3DSA:3.40.50.880 6 231 2.0E-39 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS06190 e42609c0d83c490444105289e8c070db 232 PANTHER PTHR11550 26 207 3.0E-29 T 14-09-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 PAJ_RS06190 e42609c0d83c490444105289e8c070db 232 SUPERFAMILY SSF52317 6 230 2.06E-38 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS06190 e42609c0d83c490444105289e8c070db 232 Pfam PF00117 Glutamine amidotransferase class-I 26 204 1.6E-10 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 Gene3D G3DSA:3.30.70.20 104 137 1.5E-11 T 14-09-2016 PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 Pfam PF13247 4Fe-4S dicluster domain 92 188 5.8E-25 T 14-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 PIRSF PIRSF036298 1 294 2.0E-153 T 14-09-2016 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 Pfam PF09163 Formate dehydrogenase N, transmembrane 246 289 2.7E-16 T 14-09-2016 IPR015246 Formate dehydrogenase, transmembrane PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 290 2.8E-135 T 14-09-2016 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 Gene3D G3DSA:3.30.70.20 138 172 1.5E-15 T 14-09-2016 PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 PANTHER PTHR11938:SF84 1 204 3.2E-135 T 14-09-2016 PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 Gene3D G3DSA:1.20.5.480 248 294 1.3E-21 T 14-09-2016 PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 PANTHER PTHR11938 1 204 3.2E-135 T 14-09-2016 PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 Gene3D G3DSA:3.30.70.20 30 103 2.1E-35 T 14-09-2016 PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 Gene3D G3DSA:3.30.70.20 173 227 2.1E-35 T 14-09-2016 PAJ_RS01220 58528bdcfe0015efde5c4fcbad904c2d 294 SUPERFAMILY SSF54862 27 267 1.88E-70 T 14-09-2016 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 PANTHER PTHR22939 199 449 1.5E-107 T 14-09-2016 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 SUPERFAMILY SSF50156 197 292 1.03E-16 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 Pfam PF02163 Peptidase family M50 10 437 3.8E-88 T 14-09-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 Gene3D G3DSA:2.30.42.10 223 296 5.4E-19 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 SMART SM00228 211 280 1.3E-7 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 SMART SM00228 115 186 0.21 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 Gene3D G3DSA:2.30.42.10 95 188 7.1E-13 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 449 7.9E-161 T 14-09-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 Pfam PF13180 PDZ domain 213 287 4.6E-9 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 SUPERFAMILY SSF50156 86 188 4.07E-13 T 14-09-2016 IPR001478 PDZ domain GO:0005515 PAJ_RS00725 47558bf840e54cc8da2e2795dbf80ed8 449 PANTHER PTHR22939:SF78 199 449 1.5E-107 T 14-09-2016 PAJ_RS02390 aaf1783db01cd9e991bfb9a3c1d88b8f 190 Pfam PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP 41 187 1.6E-65 T 14-09-2016 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 PAJ_RS02390 aaf1783db01cd9e991bfb9a3c1d88b8f 190 Hamap MF_00837 Lipid A palmitoyltransferase PagP [pagP]. 9 190 41.545 T 14-09-2016 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 PAJ_RS02390 aaf1783db01cd9e991bfb9a3c1d88b8f 190 Gene3D G3DSA:2.40.160.20 31 190 2.6E-82 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS02390 aaf1783db01cd9e991bfb9a3c1d88b8f 190 SUPERFAMILY SSF56925 33 190 3.22E-73 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS02390 aaf1783db01cd9e991bfb9a3c1d88b8f 190 ProDom PD103779 CRCA ANTIMICROBIAL RESISTANCE LIPOPROTEIN RCP A PEPTIDE ACYLATION LIPID EXPORTED 37 178 1.0E-58 T 14-09-2016 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 PAJ_RS15815 7ff2b6213acb2f7cca6f9e387ee2805c 63 PANTHER PTHR10916 1 61 1.1E-28 T 14-09-2016 PAJ_RS15815 7ff2b6213acb2f7cca6f9e387ee2805c 63 SUPERFAMILY SSF46561 1 61 1.57E-21 T 14-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15815 7ff2b6213acb2f7cca6f9e387ee2805c 63 Pfam PF00831 Ribosomal L29 protein 5 60 1.3E-22 T 14-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15815 7ff2b6213acb2f7cca6f9e387ee2805c 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.374 T 14-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15815 7ff2b6213acb2f7cca6f9e387ee2805c 63 Gene3D G3DSA:1.10.287.310 1 60 1.2E-27 T 14-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15815 7ff2b6213acb2f7cca6f9e387ee2805c 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 7.4E-22 T 14-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15815 7ff2b6213acb2f7cca6f9e387ee2805c 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 14-09-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 SUPERFAMILY SSF47240 10 167 2.07E-49 T 14-09-2016 IPR009078 Ferritin-like superfamily PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 PANTHER PTHR30295:SF4 9 167 3.0E-91 T 14-09-2016 PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 ProSitePatterns PS00818 Dps protein family signature 1. 51 67 - T 14-09-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 PIRSF PIRSF005900 8 167 1.5E-41 T 14-09-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 Hamap MF_01441 DNA protection during starvation protein [dps]. 1 167 46.009 T 14-09-2016 IPR023067 DNA protection during starvation protein, gammaproteobacteria GO:0016722|GO:0055114 PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 Gene3D G3DSA:1.20.1260.10 2 167 3.7E-52 T 14-09-2016 IPR012347 Ferritin-related PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 PANTHER PTHR30295 9 167 3.0E-91 T 14-09-2016 PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 Pfam PF00210 Ferritin-like domain 30 166 6.8E-22 T 14-09-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 75 91 3.4E-13 T 14-09-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 3.4E-13 T 14-09-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 PAJ_RS03280 495c825708b356604b2499346d3a93ae 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 144 162 3.4E-13 T 14-09-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 PAJ_RS16065 a60db72532bab9ee48682f0bf984419d 350 Hamap MF_02021 Cell division protein DamX [damX]. 1 350 25.152 T 14-09-2016 IPR032899 Cell division protein DamX GO:0030428|GO:0032506 PAJ_RS16065 a60db72532bab9ee48682f0bf984419d 350 Gene3D G3DSA:3.30.70.1070 274 330 9.3E-5 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS16065 a60db72532bab9ee48682f0bf984419d 350 Pfam PF05036 Sporulation related domain 266 339 1.9E-10 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS16065 a60db72532bab9ee48682f0bf984419d 350 SUPERFAMILY SSF110997 266 338 4.84E-5 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 29 52 - T 14-09-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 PANTHER PTHR24362:SF160 385 422 5.1E-41 T 14-09-2016 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 PANTHER PTHR24362:SF160 21 63 5.1E-41 T 14-09-2016 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 Pfam PF00069 Protein kinase domain 23 285 9.8E-26 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 PANTHER PTHR24362 81 343 5.1E-41 T 14-09-2016 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 PANTHER PTHR24362:SF160 81 343 5.1E-41 T 14-09-2016 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 Gene3D G3DSA:3.30.200.20 20 129 8.5E-17 T 14-09-2016 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 SUPERFAMILY SSF56112 11 300 2.02E-48 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 Gene3D G3DSA:1.10.510.10 130 310 1.2E-27 T 14-09-2016 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 Gene3D G3DSA:1.10.510.10 373 402 1.2E-27 T 14-09-2016 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 PANTHER PTHR24362 385 422 5.1E-41 T 14-09-2016 PAJ_RS09210 ee66105ce7545dd61451ddc6b22b3181 487 PANTHER PTHR24362 21 63 5.1E-41 T 14-09-2016 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 Gene3D G3DSA:3.50.50.60 319 510 7.6E-38 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 Gene3D G3DSA:3.40.30.10 1 94 2.0E-32 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 Pfam PF13192 Thioredoxin domain 126 193 5.3E-8 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 Gene3D G3DSA:3.50.50.60 213 318 8.7E-22 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 3.6E-37 T 14-09-2016 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 3.6E-37 T 14-09-2016 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 3.6E-37 T 14-09-2016 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 215 234 3.6E-37 T 14-09-2016 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 468 490 3.6E-37 T 14-09-2016 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 2.6E-65 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 478 496 2.6E-65 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 2.6E-65 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 2.6E-65 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 276 2.6E-65 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 2.6E-65 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 214 236 2.6E-65 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 246 261 2.6E-65 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 2.6E-65 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 345 365 - T 14-09-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PIRSF PIRSF000238 1 521 1.4E-259 T 14-09-2016 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 213 503 4.6E-44 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 SUPERFAMILY SSF51905 206 514 4.85E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 SUPERFAMILY SSF52833 1 101 2.35E-29 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PANTHER PTHR22912:SF107 199 514 4.9E-203 T 14-09-2016 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 PANTHER PTHR22912 199 514 4.9E-203 T 14-09-2016 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 517 3.8E-239 T 14-09-2016 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 SUPERFAMILY SSF52833 106 196 6.8E-23 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10095 1fb2b70e8806f77758b5829f7fdd5639 522 Gene3D G3DSA:3.40.30.10 105 196 7.6E-36 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 PANTHER PTHR10520 1 426 1.4E-293 T 14-09-2016 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 Gene3D G3DSA:3.30.1490.20 121 190 7.8E-34 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 43.865 T 14-09-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 Gene3D G3DSA:3.30.470.20 191 328 2.2E-64 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 SUPERFAMILY SSF51246 329 423 9.42E-31 T 14-09-2016 IPR011054 Rudiment single hybrid motif PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 SMART SM01210 330 423 4.4E-52 T 14-09-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 4.5E-83 T 14-09-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 14-09-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 9.5E-186 T 14-09-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 Gene3D G3DSA:3.90.600.10 331 423 3.1E-33 T 14-09-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 SUPERFAMILY SSF56059 104 321 1.5E-68 T 14-09-2016 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 SUPERFAMILY SSF52440 1 103 4.17E-37 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 Gene3D G3DSA:3.40.50.20 2 95 5.1E-38 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 421 9.5E-28 T 14-09-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 1.2E-36 T 14-09-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS18745 d3a7d4420db253ab3e8c4d8f46281aec 426 SMART SM01209 103 296 9.9E-141 T 14-09-2016 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 Gene3D G3DSA:3.30.70.260 295 377 9.5E-27 T 14-09-2016 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 Pfam PF01817 Chorismate mutase type II 11 89 9.3E-15 T 14-09-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 Gene3D G3DSA:3.40.190.10 106 193 9.5E-33 T 14-09-2016 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 Pfam PF00800 Prephenate dehydratase 106 287 1.8E-62 T 14-09-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 SUPERFAMILY SSF48600 6 93 3.85E-21 T 14-09-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 325 332 - T 14-09-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 261 283 - T 14-09-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 PANTHER PTHR21022 3 379 4.6E-154 T 14-09-2016 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 SUPERFAMILY SSF55021 280 377 3.02E-23 T 14-09-2016 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 PIRSF PIRSF001500 1 380 2.2E-141 T 14-09-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 7 89 1.5E-37 T 14-09-2016 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626|UniPathway: UPA00120|UniPathway: UPA00121 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 Gene3D G3DSA:3.40.190.10 194 273 2.4E-28 T 14-09-2016 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 Gene3D G3DSA:1.20.59.10 2 105 3.8E-43 T 14-09-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 SMART SM00830 11 91 8.9E-22 T 14-09-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 SUPERFAMILY SSF53850 105 291 1.63E-57 T 14-09-2016 PAJ_RS12655 43207bc2f535a28a1b27200dc82f5119 387 PANTHER PTHR21022:SF0 3 379 4.6E-154 T 14-09-2016 PAJ_RS09060 44c63676f2d34beee25e6c8c0f58442f 323 SUPERFAMILY SSF53807 43 318 9.81E-46 T 14-09-2016 PAJ_RS09060 44c63676f2d34beee25e6c8c0f58442f 323 PANTHER PTHR30535:SF7 22 318 1.2E-84 T 14-09-2016 PAJ_RS09060 44c63676f2d34beee25e6c8c0f58442f 323 Gene3D G3DSA:3.40.50.1980 43 183 3.1E-11 T 14-09-2016 PAJ_RS09060 44c63676f2d34beee25e6c8c0f58442f 323 PANTHER PTHR30535 22 318 1.2E-84 T 14-09-2016 PAJ_RS09060 44c63676f2d34beee25e6c8c0f58442f 323 Pfam PF01497 Periplasmic binding protein 54 291 1.3E-23 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 PAJ_RS09060 44c63676f2d34beee25e6c8c0f58442f 323 Gene3D G3DSA:3.40.50.1980 189 318 4.0E-27 T 14-09-2016 PAJ_RS20670 f959e5a1830f06d3a5443e323cc162f4 464 SUPERFAMILY SSF103473 18 458 2.75E-66 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20670 f959e5a1830f06d3a5443e323cc162f4 464 PANTHER PTHR23508:SF6 33 463 8.6E-128 T 14-09-2016 PAJ_RS20670 f959e5a1830f06d3a5443e323cc162f4 464 Gene3D G3DSA:1.20.1250.20 34 240 2.2E-24 T 14-09-2016 PAJ_RS20670 f959e5a1830f06d3a5443e323cc162f4 464 Gene3D G3DSA:1.20.1250.20 266 455 1.1E-14 T 14-09-2016 PAJ_RS20670 f959e5a1830f06d3a5443e323cc162f4 464 Pfam PF00083 Sugar (and other) transporter 80 458 8.8E-30 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS20670 f959e5a1830f06d3a5443e323cc162f4 464 PANTHER PTHR23508 33 463 8.6E-128 T 14-09-2016 PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 SUPERFAMILY SSF159871 109 179 2.22E-17 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 Gene3D G3DSA:3.30.1660.10 251 317 2.8E-24 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 Gene3D G3DSA:3.30.1660.10 24 91 8.5E-26 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 Gene3D G3DSA:3.30.1660.10 110 176 3.3E-26 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 PANTHER PTHR34156 2 316 2.0E-207 T 14-09-2016 PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 SUPERFAMILY SSF159871 3 95 6.02E-24 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 Pfam PF07338 Protein of unknown function (DUF1471) 261 317 1.4E-21 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 Pfam PF07338 Protein of unknown function (DUF1471) 34 91 8.9E-20 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 Pfam PF07338 Protein of unknown function (DUF1471) 120 176 4.3E-18 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 SUPERFAMILY SSF159871 241 317 9.42E-19 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS07350 3e18aaff4936b1ad378853b6951d6c7d 317 PANTHER PTHR34156:SF2 2 316 2.0E-207 T 14-09-2016 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 182 1.3E-6 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 PANTHER PTHR32089:SF63 193 514 4.8E-112 T 14-09-2016 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 SUPERFAMILY SSF58104 231 512 4.71E-70 T 14-09-2016 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 510 2.8E-54 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 439 468 8.0E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 285 314 8.0E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 362 389 8.0E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 391 420 8.0E-51 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 Gene3D G3DSA:1.10.287.950 278 483 1.7E-57 T 14-09-2016 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 SMART SM00283 264 511 3.9E-81 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 PANTHER PTHR32089 193 514 4.8E-112 T 14-09-2016 PAJ_RS20050 8bf5a40e98a1bf5573fa7418e0ed237c 549 SMART SM00304 210 263 7.9E-4 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS16885 3606a0f91d90499c8b0797b741071c95 85 Gene3D G3DSA:3.30.70.260 1 76 1.3E-13 T 14-09-2016 PAJ_RS16885 3606a0f91d90499c8b0797b741071c95 85 SUPERFAMILY SSF55021 3 74 2.0E-13 T 14-09-2016 PAJ_RS16885 3606a0f91d90499c8b0797b741071c95 85 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 3 70 0.005 T 14-09-2016 PAJ_RS16885 3606a0f91d90499c8b0797b741071c95 85 Pfam PF13710 ACT domain 13 73 3.5E-28 T 14-09-2016 PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 9.0E-17 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 PANTHER PTHR30126 3 283 1.5E-94 T 14-09-2016 PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 Gene3D G3DSA:3.40.190.10 192 242 3.9E-5 T 14-09-2016 PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 PANTHER PTHR30126:SF29 3 283 1.5E-94 T 14-09-2016 PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.3E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.3E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.3E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 Pfam PF03466 LysR substrate binding domain 89 283 7.5E-27 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 SUPERFAMILY SSF46785 6 88 4.82E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 SUPERFAMILY SSF53850 90 286 3.26E-31 T 14-09-2016 PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 Gene3D G3DSA:1.10.10.10 3 81 2.4E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01920 9e7bb9ac5000e67579116dafac141991 289 Gene3D G3DSA:3.40.190.10 94 191 2.7E-13 T 14-09-2016 PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 PANTHER PTHR11751:SF292 3 68 3.9E-22 T 14-09-2016 PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 Gene3D G3DSA:1.10.10.10 2 61 4.6E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 55 5.0E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 25 39 5.0E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 Pfam PF07702 UTRA domain 87 224 5.9E-30 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 65 1.2E-18 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 SUPERFAMILY SSF46785 2 69 2.2E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 SMART SM00345 6 65 5.7E-18 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 PANTHER PTHR11751:SF292 115 138 3.9E-22 T 14-09-2016 PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 PANTHER PTHR11751 115 138 3.9E-22 T 14-09-2016 PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 SMART SM00866 86 225 4.6E-28 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 SUPERFAMILY SSF64288 53 232 4.4E-42 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 Gene3D G3DSA:3.40.1410.10 62 232 3.1E-47 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PAJ_RS08275 0dd331ed460d7c9f6a90daddccd118ed 234 PANTHER PTHR11751 3 68 3.9E-22 T 14-09-2016 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 SUPERFAMILY SSF55021 378 449 5.88E-13 T 14-09-2016 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 6 450 4.2E-132 T 14-09-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 PANTHER PTHR21499:SF3 4 450 1.1E-140 T 14-09-2016 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 SUPERFAMILY SSF53633 6 293 1.44E-75 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 SUPERFAMILY SSF55021 298 394 8.1E-17 T 14-09-2016 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 PIRSF PIRSF000726 3 450 6.3E-150 T 14-09-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 Gene3D G3DSA:3.40.1160.10 4 54 4.5E-60 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 Gene3D G3DSA:3.40.1160.10 107 294 4.5E-60 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 PANTHER PTHR21499 4 450 1.1E-140 T 14-09-2016 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 ProSitePatterns PS00324 Aspartokinase signature. 7 15 - T 14-09-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 5 450 1.8E-142 T 14-09-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS18870 ac7a7c9430276fb3fef48098026bea60 450 Pfam PF00696 Amino acid kinase family 5 278 9.4E-49 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS00510 2ca274290a80c86177d68d2e378b2d43 287 TIGRFAM TIGR00417 speE: spermidine synthase 7 278 3.6E-115 T 14-09-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 PAJ_RS00510 2ca274290a80c86177d68d2e378b2d43 287 Gene3D G3DSA:2.30.140.10 2 54 1.1E-17 T 14-09-2016 PAJ_RS00510 2ca274290a80c86177d68d2e378b2d43 287 SUPERFAMILY SSF53335 6 284 1.39E-87 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS00510 2ca274290a80c86177d68d2e378b2d43 287 PANTHER PTHR11558 1 285 1.5E-119 T 14-09-2016 PAJ_RS00510 2ca274290a80c86177d68d2e378b2d43 287 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 81 94 - T 14-09-2016 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 PAJ_RS00510 2ca274290a80c86177d68d2e378b2d43 287 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 284 38.829 T 14-09-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 PAJ_RS00510 2ca274290a80c86177d68d2e378b2d43 287 Pfam PF01564 Spermine/spermidine synthase 7 240 5.5E-84 T 14-09-2016 PAJ_RS00510 2ca274290a80c86177d68d2e378b2d43 287 Gene3D G3DSA:3.40.50.150 56 284 9.2E-82 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS19050 4384befd3e74d331073a7eee01c0290b 221 PANTHER PTHR11260:SF282 1 219 2.5E-91 T 14-09-2016 PAJ_RS19050 4384befd3e74d331073a7eee01c0290b 221 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 73 4.4E-16 T 14-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PAJ_RS19050 4384befd3e74d331073a7eee01c0290b 221 SUPERFAMILY SSF52833 1 80 2.58E-19 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19050 4384befd3e74d331073a7eee01c0290b 221 Gene3D G3DSA:1.20.1050.10 90 210 9.7E-22 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS19050 4384befd3e74d331073a7eee01c0290b 221 PANTHER PTHR11260 1 219 2.5E-91 T 14-09-2016 PAJ_RS19050 4384befd3e74d331073a7eee01c0290b 221 Gene3D G3DSA:3.40.30.10 2 89 8.4E-21 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19050 4384befd3e74d331073a7eee01c0290b 221 SUPERFAMILY SSF47616 86 211 1.5E-19 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS19050 4384befd3e74d331073a7eee01c0290b 221 Pfam PF00043 Glutathione S-transferase, C-terminal domain 145 204 8.8E-7 T 14-09-2016 IPR004046 Glutathione S-transferase, C-terminal PAJ_RS03605 29b4b8826bb0749578cb6bcb4b9f27cf 760 PANTHER PTHR30191 9 760 0.0 T 14-09-2016 PAJ_RS03605 29b4b8826bb0749578cb6bcb4b9f27cf 760 PIRSF PIRSF000379 8 760 0.0 T 14-09-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493|UniPathway: UPA00920 PAJ_RS03605 29b4b8826bb0749578cb6bcb4b9f27cf 760 Pfam PF01228 Glycine radical 630 741 2.0E-42 T 14-09-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 PAJ_RS03605 29b4b8826bb0749578cb6bcb4b9f27cf 760 PANTHER PTHR30191:SF7 9 760 0.0 T 14-09-2016 PAJ_RS03605 29b4b8826bb0749578cb6bcb4b9f27cf 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 760 0.0 T 14-09-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493|UniPathway: UPA00920 PAJ_RS03605 29b4b8826bb0749578cb6bcb4b9f27cf 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 14-09-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site PAJ_RS03605 29b4b8826bb0749578cb6bcb4b9f27cf 760 Pfam PF02901 Pyruvate formate lyase-like 25 614 8.6E-200 T 14-09-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 PAJ_RS03605 29b4b8826bb0749578cb6bcb4b9f27cf 760 SUPERFAMILY SSF51998 5 759 1.5E-286 T 14-09-2016 PAJ_RS03605 29b4b8826bb0749578cb6bcb4b9f27cf 760 Gene3D G3DSA:3.20.70.20 5 759 0.0 T 14-09-2016 PAJ_RS02395 a758c4b7bf7e09c874071c8f3ccb8774 69 Gene3D G3DSA:2.40.50.140 4 67 1.1E-32 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS02395 a758c4b7bf7e09c874071c8f3ccb8774 69 PANTHER PTHR11544 1 69 8.4E-43 T 14-09-2016 PAJ_RS02395 a758c4b7bf7e09c874071c8f3ccb8774 69 SMART SM00357 5 69 3.6E-33 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 PAJ_RS02395 a758c4b7bf7e09c874071c8f3ccb8774 69 PIRSF PIRSF002599 1 69 2.8E-26 T 14-09-2016 IPR012156 Cold shock, CspA GO:0003676 PAJ_RS02395 a758c4b7bf7e09c874071c8f3ccb8774 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 14-09-2016 IPR019844 Cold-shock conserved site PAJ_RS02395 a758c4b7bf7e09c874071c8f3ccb8774 69 PRINTS PR00050 Cold shock protein signature 6 21 1.2E-18 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS02395 a758c4b7bf7e09c874071c8f3ccb8774 69 PRINTS PR00050 Cold shock protein signature 42 60 1.2E-18 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS02395 a758c4b7bf7e09c874071c8f3ccb8774 69 PRINTS PR00050 Cold shock protein signature 27 36 1.2E-18 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS02395 a758c4b7bf7e09c874071c8f3ccb8774 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.2E-33 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS02395 a758c4b7bf7e09c874071c8f3ccb8774 69 SUPERFAMILY SSF50249 3 68 5.36E-26 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.5E-21 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 PANTHER PTHR30537 1 305 4.3E-158 T 14-09-2016 PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 Pfam PF03466 LysR substrate binding domain 91 292 1.5E-38 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 SUPERFAMILY SSF46785 3 87 1.97E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 Gene3D G3DSA:3.40.190.10 94 179 1.9E-34 T 14-09-2016 PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 SUPERFAMILY SSF53850 93 295 1.47E-38 T 14-09-2016 PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 PANTHER PTHR30537:SF26 1 305 4.3E-158 T 14-09-2016 PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.6E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.6E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.6E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 Gene3D G3DSA:3.40.190.10 180 258 3.7E-16 T 14-09-2016 PAJ_RS13085 895fd80f117c5a0328c0cb6f0afc2bef 305 Gene3D G3DSA:1.10.10.10 2 88 1.6E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09730 49cf5bd5c0d87cef4d30bc6c227ae6f3 261 PANTHER PTHR12110 1 257 2.4E-144 T 14-09-2016 PAJ_RS09730 49cf5bd5c0d87cef4d30bc6c227ae6f3 261 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 2.3E-36 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS09730 49cf5bd5c0d87cef4d30bc6c227ae6f3 261 SUPERFAMILY SSF51658 1 258 7.2E-86 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS09730 49cf5bd5c0d87cef4d30bc6c227ae6f3 261 PIRSF PIRSF006241 1 261 1.4E-86 T 14-09-2016 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 PAJ_RS09730 49cf5bd5c0d87cef4d30bc6c227ae6f3 261 PANTHER PTHR12110:SF12 1 257 2.4E-144 T 14-09-2016 PAJ_RS09730 49cf5bd5c0d87cef4d30bc6c227ae6f3 261 Gene3D G3DSA:3.20.20.150 1 257 1.3E-89 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 418 436 1.5E-79 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 73 98 1.5E-79 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 164 183 1.5E-79 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 459 474 1.5E-79 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 264 280 1.5E-79 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 483 500 1.5E-79 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 146 164 1.5E-79 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 294 313 1.5E-79 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 394 412 1.5E-79 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 SUPERFAMILY SSF56235 43 575 5.21E-199 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PANTHER PTHR11686 6 583 2.4E-241 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 Pfam PF01019 Gamma-glutamyltranspeptidase 66 575 3.5E-190 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 PANTHER PTHR11686:SF9 6 583 2.4E-241 T 14-09-2016 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 51 574 1.2E-216 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16285 19dc92508bfa6000c64e125d275208e7 583 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 394 418 - T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 PANTHER PTHR24093 624 680 0.0 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 PANTHER PTHR24093 8 586 0.0 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 Pfam PF00122 E1-E2 ATPase 71 295 9.2E-40 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 306 312 - T 14-09-2016 IPR018303 P-type ATPase, phosphorylation site PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 SUPERFAMILY SSF81665 29 102 1.96E-12 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 SUPERFAMILY SSF81665 207 298 1.96E-12 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 SUPERFAMILY SSF81665 618 661 1.96E-12 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 Gene3D G3DSA:2.70.150.10 39 207 3.4E-23 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 PANTHER PTHR24093:SF49 624 680 0.0 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 Gene3D G3DSA:3.40.50.1000 442 562 3.1E-35 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 7 679 41.237 T 14-09-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 2 675 0.0 T 14-09-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 SUPERFAMILY SSF81653 114 206 2.75E-20 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 153 167 3.7E-24 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 462 472 3.7E-24 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 515 534 3.7E-24 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 304 318 3.7E-24 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 538 550 3.7E-24 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 SUPERFAMILY SSF56784 303 322 4.04E-38 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 SUPERFAMILY SSF56784 412 566 4.04E-38 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 Gene3D G3DSA:3.40.1110.10 315 441 1.0E-54 T 14-09-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 Pfam PF00702 haloacid dehalogenase-like hydrolase 300 529 8.5E-35 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 PANTHER PTHR24093:SF49 8 586 0.0 T 14-09-2016 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 372 602 6.1E-47 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 71 337 2.9E-36 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 PAJ_RS16685 21d4d40ffa682354e4e2a0df715f8880 681 SUPERFAMILY SSF81660 315 449 3.6E-36 T 14-09-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PAJ_RS20725 a1221b7f452f7f9061d75491ef7c5bbd 136 PIRSF PIRSF029225 2 131 3.4E-40 T 14-09-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS20725 a1221b7f452f7f9061d75491ef7c5bbd 136 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 37 125 3.0E-17 T 14-09-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS20725 a1221b7f452f7f9061d75491ef7c5bbd 136 Pfam PF03603 DNA polymerase III psi subunit 3 127 1.7E-42 T 14-09-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS20725 a1221b7f452f7f9061d75491ef7c5bbd 136 SUPERFAMILY SSF102220 28 135 1.57E-27 T 14-09-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS20725 a1221b7f452f7f9061d75491ef7c5bbd 136 Gene3D G3DSA:3.40.50.10220 26 135 1.3E-35 T 14-09-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS17550 5da894c8bff8c7b390c54c79f1e3b7c1 323 PANTHER PTHR32196:SF21 8 323 4.0E-138 T 14-09-2016 PAJ_RS17550 5da894c8bff8c7b390c54c79f1e3b7c1 323 PANTHER PTHR32196 8 323 4.0E-138 T 14-09-2016 PAJ_RS17550 5da894c8bff8c7b390c54c79f1e3b7c1 323 Pfam PF02653 Branched-chain amino acid transport system / permease component 46 314 1.1E-53 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS12730 9f7352c008673819c63392ec8f74440a 188 SUPERFAMILY SSF56784 5 185 1.16E-45 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS12730 9f7352c008673819c63392ec8f74440a 188 PANTHER PTHR18901 1 186 2.4E-64 T 14-09-2016 PAJ_RS12730 9f7352c008673819c63392ec8f74440a 188 Gene3D G3DSA:1.10.150.240 20 65 2.6E-4 T 14-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PAJ_RS12730 9f7352c008673819c63392ec8f74440a 188 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 121 183 1.2E-14 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS12730 9f7352c008673819c63392ec8f74440a 188 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 5 185 8.5E-57 T 14-09-2016 IPR010976 Beta-phosphoglucomutase hydrolase PAJ_RS12730 9f7352c008673819c63392ec8f74440a 188 Gene3D G3DSA:3.40.50.1000 88 185 3.6E-37 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS12730 9f7352c008673819c63392ec8f74440a 188 Gene3D G3DSA:3.40.50.1000 3 19 3.6E-37 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS12730 9f7352c008673819c63392ec8f74440a 188 PANTHER PTHR18901:SF29 1 186 2.4E-64 T 14-09-2016 PAJ_RS12730 9f7352c008673819c63392ec8f74440a 188 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 5.5E-28 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS15620 b9954fe64544f564bec00f08a41ba6d6 366 PANTHER PTHR30085:SF3 63 366 6.5E-183 T 14-09-2016 PAJ_RS15620 b9954fe64544f564bec00f08a41ba6d6 366 PANTHER PTHR30085 63 366 6.5E-183 T 14-09-2016 PAJ_RS15620 b9954fe64544f564bec00f08a41ba6d6 366 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 155 251 7.8E-20 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS15620 b9954fe64544f564bec00f08a41ba6d6 366 Gene3D G3DSA:1.10.3720.10 152 360 1.9E-40 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS15620 b9954fe64544f564bec00f08a41ba6d6 366 SUPERFAMILY SSF161098 153 345 1.7E-35 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS15620 b9954fe64544f564bec00f08a41ba6d6 366 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 173 359 7.8E-27 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS06295 95da8e986415534286005f323adf98ab 91 SMART SM00421 7 64 2.4E-4 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS06295 95da8e986415534286005f323adf98ab 91 Pfam PF00196 Bacterial regulatory proteins, luxR family 10 63 7.9E-12 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS06295 95da8e986415534286005f323adf98ab 91 SUPERFAMILY SSF46894 7 69 3.1E-14 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS06295 95da8e986415534286005f323adf98ab 91 Gene3D G3DSA:1.10.10.10 9 69 2.4E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.0E-35 T 14-09-2016 IPR027486 Ribosomal protein S10 domain PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 SUPERFAMILY SSF54999 5 101 1.26E-36 T 14-09-2016 IPR027486 Ribosomal protein S10 domain PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 14-09-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 Gene3D G3DSA:3.30.70.600 3 102 8.7E-44 T 14-09-2016 IPR027486 Ribosomal protein S10 domain PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 PANTHER PTHR11700 1 102 1.5E-54 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.353 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 SMART SM01403 7 101 1.0E-56 T 14-09-2016 IPR027486 Ribosomal protein S10 domain PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.0E-46 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15860 2f4497a4327376f1a2bf4db96272c07f 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PAJ_RS18260 dcb64d4811c5e9d5ce205a3ae0bd107a 494 SUPERFAMILY SSF53067 132 300 5.7E-42 T 14-09-2016 PAJ_RS18260 dcb64d4811c5e9d5ce205a3ae0bd107a 494 PANTHER PTHR30005 1 493 2.2E-299 T 14-09-2016 PAJ_RS18260 dcb64d4811c5e9d5ce205a3ae0bd107a 494 Gene3D G3DSA:3.30.420.150 128 300 1.3E-51 T 14-09-2016 PAJ_RS18260 dcb64d4811c5e9d5ce205a3ae0bd107a 494 SUPERFAMILY SSF53067 7 128 1.94E-37 T 14-09-2016 PAJ_RS18260 dcb64d4811c5e9d5ce205a3ae0bd107a 494 SUPERFAMILY SSF109604 307 493 1.85E-43 T 14-09-2016 PAJ_RS18260 dcb64d4811c5e9d5ce205a3ae0bd107a 494 Pfam PF02541 Ppx/GppA phosphatase family 21 301 1.3E-92 T 14-09-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 PAJ_RS18260 dcb64d4811c5e9d5ce205a3ae0bd107a 494 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 2 494 54.975 T 14-09-2016 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40|UniPathway: UPA00908 PAJ_RS18260 dcb64d4811c5e9d5ce205a3ae0bd107a 494 Gene3D G3DSA:3.30.420.40 4 127 2.6E-44 T 14-09-2016 PAJ_RS18260 dcb64d4811c5e9d5ce205a3ae0bd107a 494 PIRSF PIRSF001267 1 494 1.9E-178 T 14-09-2016 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40|UniPathway: UPA00908 PAJ_RS18260 dcb64d4811c5e9d5ce205a3ae0bd107a 494 PANTHER PTHR30005:SF2 1 493 2.2E-299 T 14-09-2016 PAJ_RS01545 ce583be2904bb6e5cbfebdb3e1818e74 193 Pfam PF04336 Protein of unknown function, DUF479 81 186 1.6E-29 T 14-09-2016 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 PAJ_RS01545 ce583be2904bb6e5cbfebdb3e1818e74 193 PIRSF PIRSF011489 1 193 3.6E-72 T 14-09-2016 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 PAJ_RS01545 ce583be2904bb6e5cbfebdb3e1818e74 193 PANTHER PTHR38764 2 193 9.1E-69 T 14-09-2016 PAJ_RS01545 ce583be2904bb6e5cbfebdb3e1818e74 193 PANTHER PTHR38764:SF1 2 193 9.1E-69 T 14-09-2016 PAJ_RS18790 0651e0838eb3a7a07688528c5522a230 241 Gene3D G3DSA:3.40.190.10 4 122 8.0E-21 T 14-09-2016 PAJ_RS18790 0651e0838eb3a7a07688528c5522a230 241 PANTHER PTHR30632 4 236 3.1E-71 T 14-09-2016 PAJ_RS18790 0651e0838eb3a7a07688528c5522a230 241 Pfam PF13531 Bacterial extracellular solute-binding protein 4 236 1.5E-40 T 14-09-2016 PAJ_RS18790 0651e0838eb3a7a07688528c5522a230 241 PANTHER PTHR30632:SF6 4 236 3.1E-71 T 14-09-2016 PAJ_RS18790 0651e0838eb3a7a07688528c5522a230 241 SUPERFAMILY SSF53850 3 237 1.79E-33 T 14-09-2016 PAJ_RS16405 c6613b5dc0f5f8664c28b41e3090267f 221 PANTHER PTHR34300 1 215 6.2E-124 T 14-09-2016 PAJ_RS16405 c6613b5dc0f5f8664c28b41e3090267f 221 PANTHER PTHR34300:SF1 1 215 6.2E-124 T 14-09-2016 PAJ_RS16405 c6613b5dc0f5f8664c28b41e3090267f 221 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 13 204 7.7E-59 T 14-09-2016 IPR003744 Protein of unknown function DUF165 PAJ_RS16405 c6613b5dc0f5f8664c28b41e3090267f 221 Pfam PF02592 Putative vitamin uptake transporter 43 198 2.1E-33 T 14-09-2016 IPR003744 Protein of unknown function DUF165 PAJ_RS06085 185862b8177c9a237d165991c71ce929 263 Gene3D G3DSA:3.40.50.880 57 230 2.3E-10 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS06085 185862b8177c9a237d165991c71ce929 263 Pfam PF09825 Biotin-protein ligase, N terminal 40 136 4.4E-6 T 14-09-2016 IPR019197 Biotin-protein ligase, N-terminal PAJ_RS06085 185862b8177c9a237d165991c71ce929 263 PIRSF PIRSF016642 14 256 6.6E-39 T 14-09-2016 IPR015834 Uncharacterised conserved protein UCP016642 PAJ_RS06085 185862b8177c9a237d165991c71ce929 263 SUPERFAMILY SSF52317 42 232 3.58E-16 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 Gene3D G3DSA:3.40.190.10 192 247 1.5E-13 T 14-09-2016 PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 SUPERFAMILY SSF53850 90 294 8.07E-33 T 14-09-2016 PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 PANTHER PTHR30293 1 300 7.7E-129 T 14-09-2016 PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 PANTHER PTHR30293:SF0 1 300 7.7E-129 T 14-09-2016 PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 SUPERFAMILY SSF46785 1 84 3.69E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 Gene3D G3DSA:3.40.190.10 90 191 1.0E-20 T 14-09-2016 PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 Pfam PF03466 LysR substrate binding domain 89 288 2.5E-33 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.6E-22 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.2E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.2E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.2E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS09535 913fb75a0b97ef48f19ddced62e02ed4 305 Gene3D G3DSA:1.10.10.10 1 84 1.4E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 PANTHER PTHR32089:SF48 1 519 1.5E-204 T 14-09-2016 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 Gene3D G3DSA:1.10.287.950 285 488 1.3E-64 T 14-09-2016 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 SMART SM00304 216 268 3.2E-9 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 Pfam PF02203 Tar ligand binding domain homologue 1 175 8.4E-41 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 SMART SM00319 44 182 1.2E-29 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 PANTHER PTHR32089 1 519 1.5E-204 T 14-09-2016 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 SUPERFAMILY SSF58104 236 518 2.75E-77 T 14-09-2016 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 SUPERFAMILY SSF47170 25 182 1.83E-37 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 1.4E-84 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.4E-84 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 1.4E-84 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 1.4E-84 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 1.4E-84 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 1.4E-84 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 1.4E-84 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 Pfam PF00672 HAMP domain 196 265 1.3E-14 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 SMART SM00283 269 516 8.3E-97 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 Gene3D G3DSA:1.20.120.30 36 181 8.1E-46 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08505 e8409b0efeff489cc7d6e9375dcd22ac 558 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 515 5.2E-67 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS05340 b4f7ba15bde29409139214ccb50781d6 343 PANTHER PTHR30519 4 216 5.5E-102 T 14-09-2016 PAJ_RS05340 b4f7ba15bde29409139214ccb50781d6 343 PANTHER PTHR30519 235 343 5.5E-102 T 14-09-2016 PAJ_RS05340 b4f7ba15bde29409139214ccb50781d6 343 PIRSF PIRSF005632 1 343 4.0E-194 T 14-09-2016 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit PAJ_RS05340 b4f7ba15bde29409139214ccb50781d6 343 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 329 1.4E-40 T 14-09-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 PAJ_RS05340 b4f7ba15bde29409139214ccb50781d6 343 SUPERFAMILY SSF51726 7 342 2.09E-69 T 14-09-2016 PAJ_RS05340 b4f7ba15bde29409139214ccb50781d6 343 Gene3D G3DSA:3.20.20.210 2 340 4.5E-90 T 14-09-2016 PAJ_RS06360 6a1b14e28eff3dcee20ab228dd64b266 221 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 8 183 3.6E-11 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS06360 6a1b14e28eff3dcee20ab228dd64b266 221 SUPERFAMILY SSF56784 5 219 1.82E-35 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS06360 6a1b14e28eff3dcee20ab228dd64b266 221 Gene3D G3DSA:3.40.50.1000 86 203 6.8E-22 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS06360 6a1b14e28eff3dcee20ab228dd64b266 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 93 187 1.4E-8 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS06360 6a1b14e28eff3dcee20ab228dd64b266 221 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 6 199 2.9E-47 T 14-09-2016 IPR006328 Haloacid dehalogenase, type II GO:0008152|GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 PANTHER PTHR24220 7 379 8.9E-140 T 14-09-2016 PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 Pfam PF00005 ABC transporter 272 424 2.7E-19 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 Pfam PF00005 ABC transporter 21 172 4.3E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 Gene3D G3DSA:3.40.50.300 273 491 3.5E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 SUPERFAMILY SSF52540 271 484 4.54E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 SMART SM00382 279 473 2.3E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 SMART SM00382 30 228 1.2E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 SUPERFAMILY SSF52540 5 224 1.98E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 PANTHER PTHR24220:SF416 7 379 8.9E-140 T 14-09-2016 PAJ_RS06665 68e1638ff223d38741e1a1d44d82a549 499 Gene3D G3DSA:3.40.50.300 3 223 7.5E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04585 886f9707347132bc8a49b3b1317ab7d9 479 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 52 331 1.3E-89 T 14-09-2016 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 PAJ_RS04585 886f9707347132bc8a49b3b1317ab7d9 479 Gene3D G3DSA:3.30.1360.60 401 475 6.4E-27 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS04585 886f9707347132bc8a49b3b1317ab7d9 479 Pfam PF00367 phosphotransferase system, EIIB 405 437 8.4E-14 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS04585 886f9707347132bc8a49b3b1317ab7d9 479 PANTHER PTHR30009 6 478 1.8E-260 T 14-09-2016 PAJ_RS04585 886f9707347132bc8a49b3b1317ab7d9 479 PANTHER PTHR30009:SF2 6 478 1.8E-260 T 14-09-2016 PAJ_RS04585 886f9707347132bc8a49b3b1317ab7d9 479 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 378 461 1.8E-24 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS04585 886f9707347132bc8a49b3b1317ab7d9 479 SUPERFAMILY SSF55604 402 475 7.98E-21 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS04585 886f9707347132bc8a49b3b1317ab7d9 479 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 415 432 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS04585 886f9707347132bc8a49b3b1317ab7d9 479 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 476 1.8E-230 T 14-09-2016 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0015758|GO:0016021 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS04585 886f9707347132bc8a49b3b1317ab7d9 479 Pfam PF02378 Phosphotransferase system, EIIC 13 320 4.4E-83 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS10225 d2487a228b4029fc44fdb1d697ce926c 297 Pfam PF04754 Putative transposase, YhgA-like 9 203 3.5E-82 T 14-09-2016 IPR006842 Transposase (putative), YhgA-like PAJ_RS10225 d2487a228b4029fc44fdb1d697ce926c 297 PANTHER PTHR34611:SF3 3 297 4.6E-177 T 14-09-2016 PAJ_RS10225 d2487a228b4029fc44fdb1d697ce926c 297 PANTHER PTHR34611 3 297 4.6E-177 T 14-09-2016 PAJ_RS10225 d2487a228b4029fc44fdb1d697ce926c 297 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 10 294 4.8E-70 T 14-09-2016 IPR010106 Conserved hypothetical protein CHP01784 PAJ_RS03115 cd449f13403e30206f314072b634337f 631 Pfam PF00672 HAMP domain 313 378 1.1E-6 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS03115 cd449f13403e30206f314072b634337f 631 PANTHER PTHR32089 297 631 3.0E-139 T 14-09-2016 PAJ_RS03115 cd449f13403e30206f314072b634337f 631 PANTHER PTHR32089:SF63 297 631 3.0E-139 T 14-09-2016 PAJ_RS03115 cd449f13403e30206f314072b634337f 631 Pfam PF02743 Cache domain 44 291 4.0E-29 T 14-09-2016 IPR033479 Double Cache domain 1 PAJ_RS03115 cd449f13403e30206f314072b634337f 631 Gene3D G3DSA:1.10.287.950 398 602 9.8E-61 T 14-09-2016 PAJ_RS03115 cd449f13403e30206f314072b634337f 631 SMART SM00283 383 630 3.2E-82 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS03115 cd449f13403e30206f314072b634337f 631 SMART SM00304 328 382 6.0E-6 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS03115 cd449f13403e30206f314072b634337f 631 Gene3D G3DSA:3.30.450.20 161 305 1.3E-11 T 14-09-2016 PAJ_RS03115 cd449f13403e30206f314072b634337f 631 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 443 629 4.4E-58 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS03115 cd449f13403e30206f314072b634337f 631 SUPERFAMILY SSF58104 350 631 3.53E-72 T 14-09-2016 PAJ_RS00745 29010f0116289bafdb115fd09925854d 151 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 149 37.701 T 14-09-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 PAJ_RS00745 29010f0116289bafdb115fd09925854d 151 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 8 146 1.4E-61 T 14-09-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 PAJ_RS00745 29010f0116289bafdb115fd09925854d 151 Pfam PF07977 FabA-like domain 17 141 1.1E-40 T 14-09-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 PAJ_RS00745 29010f0116289bafdb115fd09925854d 151 Gene3D G3DSA:3.10.129.10 4 147 1.3E-60 T 14-09-2016 IPR029069 HotDog domain PAJ_RS00745 29010f0116289bafdb115fd09925854d 151 SUPERFAMILY SSF54637 10 149 1.5E-51 T 14-09-2016 IPR029069 HotDog domain PAJ_RS00745 29010f0116289bafdb115fd09925854d 151 PANTHER PTHR30272 1 151 6.8E-90 T 14-09-2016 PAJ_RS02580 376669a80fad6077877e366296386530 406 Gene3D G3DSA:3.30.420.40 225 376 1.5E-48 T 14-09-2016 PAJ_RS02580 376669a80fad6077877e366296386530 406 SUPERFAMILY SSF46785 14 79 4.77E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02580 376669a80fad6077877e366296386530 406 Pfam PF01047 MarR family 25 63 8.3E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS02580 376669a80fad6077877e366296386530 406 Gene3D G3DSA:1.10.10.10 14 79 1.1E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02580 376669a80fad6077877e366296386530 406 PANTHER PTHR18964:SF128 64 403 3.2E-199 T 14-09-2016 PAJ_RS02580 376669a80fad6077877e366296386530 406 Pfam PF00480 ROK family 88 392 1.8E-92 T 14-09-2016 IPR000600 ROK family PAJ_RS02580 376669a80fad6077877e366296386530 406 PANTHER PTHR18964 64 403 3.2E-199 T 14-09-2016 PAJ_RS02580 376669a80fad6077877e366296386530 406 Gene3D G3DSA:3.30.420.40 84 224 1.6E-33 T 14-09-2016 PAJ_RS02580 376669a80fad6077877e366296386530 406 SUPERFAMILY SSF53067 88 394 4.27E-57 T 14-09-2016 PAJ_RS02580 376669a80fad6077877e366296386530 406 ProSitePatterns PS01125 ROK family signature. 220 247 - T 14-09-2016 IPR000600 ROK family PAJ_RS08725 43107f0e95b642bc949ec00ec01ae5d0 288 Pfam PF04321 RmlD substrate binding domain 1 277 2.3E-100 T 14-09-2016 IPR029903 RmlD-like substrate binding domain PAJ_RS08725 43107f0e95b642bc949ec00ec01ae5d0 288 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 276 3.7E-97 T 14-09-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family PAJ_RS08725 43107f0e95b642bc949ec00ec01ae5d0 288 PANTHER PTHR10491:SF4 1 285 3.9E-100 T 14-09-2016 PAJ_RS08725 43107f0e95b642bc949ec00ec01ae5d0 288 SUPERFAMILY SSF51735 1 276 1.61E-94 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS08725 43107f0e95b642bc949ec00ec01ae5d0 288 PANTHER PTHR10491 1 285 3.9E-100 T 14-09-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family PAJ_RS08725 43107f0e95b642bc949ec00ec01ae5d0 288 Gene3D G3DSA:3.40.50.720 1 225 1.3E-59 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 Gene3D G3DSA:1.20.1560.10 148 460 2.7E-56 T 14-09-2016 PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 ProSitePatterns PS00211 ABC transporters family signature. 614 628 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 Gene3D G3DSA:3.40.50.300 476 702 5.0E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 SMART SM00382 502 688 4.1E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 PANTHER PTHR24221:SF260 130 706 3.8E-208 T 14-09-2016 PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 PANTHER PTHR24221:SF260 67 95 3.8E-208 T 14-09-2016 PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 Pfam PF00005 ABC transporter 497 642 6.7E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 SUPERFAMILY SSF90123 148 460 1.57E-55 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 PANTHER PTHR24221 130 706 3.8E-208 T 14-09-2016 PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 PANTHER PTHR24221 67 95 3.8E-208 T 14-09-2016 PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 9 704 4.0E-252 T 14-09-2016 IPR017750 ATPase, type I secretion system PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 SUPERFAMILY SSF52540 467 701 1.12E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 Gene3D G3DSA:3.90.70.10 5 122 2.3E-8 T 14-09-2016 PAJ_RS10480 04a65d5114d341d4b2c5c774b23e6d4a 715 Pfam PF00664 ABC transporter transmembrane region 165 426 9.4E-26 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS10545 3a5a7799b94c950a571d30f6ca47594b 398 PIRSF PIRSF006728 1 384 3.0E-107 T 14-09-2016 IPR008135 Competence-induced protein CinA PAJ_RS10545 3a5a7799b94c950a571d30f6ca47594b 398 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 3 396 1.0E-118 T 14-09-2016 IPR008135 Competence-induced protein CinA PAJ_RS10545 3a5a7799b94c950a571d30f6ca47594b 398 Pfam PF00994 Probable molybdopterin binding domain 6 170 9.0E-31 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS10545 3a5a7799b94c950a571d30f6ca47594b 398 PANTHER PTHR13939:SF3 2 386 1.6E-194 T 14-09-2016 PAJ_RS10545 3a5a7799b94c950a571d30f6ca47594b 398 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 398 107.742 T 14-09-2016 IPR008135 Competence-induced protein CinA PAJ_RS10545 3a5a7799b94c950a571d30f6ca47594b 398 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 166 1.5E-32 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS10545 3a5a7799b94c950a571d30f6ca47594b 398 Gene3D G3DSA:3.40.980.10 2 200 2.3E-27 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS10545 3a5a7799b94c950a571d30f6ca47594b 398 SMART SM00852 5 172 7.7E-34 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS10545 3a5a7799b94c950a571d30f6ca47594b 398 PANTHER PTHR13939 2 386 1.6E-194 T 14-09-2016 PAJ_RS10545 3a5a7799b94c950a571d30f6ca47594b 398 SUPERFAMILY SSF53218 2 204 6.02E-36 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS17840 c5b3749af0522676a0958bd55237e4c0 104 PANTHER PTHR34581:SF2 2 104 9.6E-39 T 14-09-2016 PAJ_RS17840 c5b3749af0522676a0958bd55237e4c0 104 SUPERFAMILY SSF52794 1 101 8.37E-35 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS17840 c5b3749af0522676a0958bd55237e4c0 104 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 94 8.6E-19 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS17840 c5b3749af0522676a0958bd55237e4c0 104 PANTHER PTHR34581 2 104 9.6E-39 T 14-09-2016 PAJ_RS17840 c5b3749af0522676a0958bd55237e4c0 104 Gene3D G3DSA:3.40.50.270 1 102 5.3E-38 T 14-09-2016 PAJ_RS19490 530b7be5178afe80d87b83b7c104b86b 103 Gene3D G3DSA:2.60.120.10 14 101 1.5E-11 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS19490 530b7be5178afe80d87b83b7c104b86b 103 SUPERFAMILY SSF51182 37 101 3.06E-12 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS11915 3a9ee8521e3948aefa1558ca774fa327 386 Gene3D G3DSA:3.40.640.10 17 253 1.6E-95 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS11915 3a9ee8521e3948aefa1558ca774fa327 386 Pfam PF00266 Aminotransferase class-V 5 368 2.2E-86 T 14-09-2016 IPR000192 Aminotransferase class V domain PAJ_RS11915 3a9ee8521e3948aefa1558ca774fa327 386 PIRSF PIRSF005572 2 384 1.7E-133 T 14-09-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 PAJ_RS11915 3a9ee8521e3948aefa1558ca774fa327 386 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 385 49.765 T 14-09-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 PAJ_RS11915 3a9ee8521e3948aefa1558ca774fa327 386 PANTHER PTHR11601:SF45 4 384 5.8E-211 T 14-09-2016 PAJ_RS11915 3a9ee8521e3948aefa1558ca774fa327 386 Gene3D G3DSA:3.90.1150.10 254 375 1.2E-48 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS11915 3a9ee8521e3948aefa1558ca774fa327 386 PANTHER PTHR11601 4 384 5.8E-211 T 14-09-2016 PAJ_RS11915 3a9ee8521e3948aefa1558ca774fa327 386 SUPERFAMILY SSF53383 4 380 1.58E-109 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS11915 3a9ee8521e3948aefa1558ca774fa327 386 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 383 1.5E-201 T 14-09-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 PAJ_RS11915 3a9ee8521e3948aefa1558ca774fa327 386 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 14-09-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PAJ_RS11455 ff26640276224d0f642dc369debac727 326 Gene3D G3DSA:3.40.50.2300 23 145 1.9E-27 T 14-09-2016 PAJ_RS11455 ff26640276224d0f642dc369debac727 326 SUPERFAMILY SSF53822 24 294 1.63E-57 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS11455 ff26640276224d0f642dc369debac727 326 PANTHER PTHR32196 7 324 2.1E-134 T 14-09-2016 PAJ_RS11455 ff26640276224d0f642dc369debac727 326 Pfam PF13407 Periplasmic binding protein domain 27 278 3.8E-48 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS11455 ff26640276224d0f642dc369debac727 326 PANTHER PTHR32196:SF36 7 324 2.1E-134 T 14-09-2016 PAJ_RS11455 ff26640276224d0f642dc369debac727 326 Gene3D G3DSA:3.40.50.2300 146 275 3.4E-22 T 14-09-2016 PAJ_RS10050 5b3558779bb4da7a315dfb3c67757bbe 300 SMART SM00046 6 132 6.4E-19 T 14-09-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 PAJ_RS10050 5b3558779bb4da7a315dfb3c67757bbe 300 PANTHER PTHR12358 8 294 3.3E-65 T 14-09-2016 PAJ_RS10050 5b3558779bb4da7a315dfb3c67757bbe 300 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 1 294 2.3E-94 T 14-09-2016 IPR005218 Diacylglycerol/lipid kinase PAJ_RS10050 5b3558779bb4da7a315dfb3c67757bbe 300 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 7 299 1.0E-134 T 14-09-2016 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 PAJ_RS10050 5b3558779bb4da7a315dfb3c67757bbe 300 SUPERFAMILY SSF111331 8 296 1.29E-72 T 14-09-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain PAJ_RS10050 5b3558779bb4da7a315dfb3c67757bbe 300 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 129 9.9E-28 T 14-09-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 PAJ_RS10050 5b3558779bb4da7a315dfb3c67757bbe 300 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 4 300 46.529 T 14-09-2016 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 PAJ_RS10050 5b3558779bb4da7a315dfb3c67757bbe 300 Gene3D G3DSA:3.40.50.10330 20 94 3.9E-4 T 14-09-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PAJ_RS05210 d614434cd6711f1a9e66014ddb127d7c 163 Pfam PF00419 Fimbrial protein 16 163 8.3E-17 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS05210 d614434cd6711f1a9e66014ddb127d7c 163 PANTHER PTHR33420 1 163 1.0E-39 T 14-09-2016 PAJ_RS05210 d614434cd6711f1a9e66014ddb127d7c 163 SUPERFAMILY SSF49401 20 163 1.54E-30 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS05210 d614434cd6711f1a9e66014ddb127d7c 163 Gene3D G3DSA:2.60.40.1090 13 163 3.1E-35 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS08110 d915e01cc5978c2231e1d883395f3c3d 281 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 10 279 4.7E-110 T 14-09-2016 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 PAJ_RS08110 d915e01cc5978c2231e1d883395f3c3d 281 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 9 279 2.7E-144 T 14-09-2016 IPR018405 Phosphotransferase system, mannose/fructose/sorbose family IID component, subgroup GO:0009401|GO:0016021 PAJ_RS08110 d915e01cc5978c2231e1d883395f3c3d 281 PANTHER PTHR32502 1 281 7.0E-175 T 14-09-2016 PAJ_RS08110 d915e01cc5978c2231e1d883395f3c3d 281 PANTHER PTHR32502:SF5 1 281 7.0E-175 T 14-09-2016 PAJ_RS12910 d793714d8b1cd24ecf320b62af1e103c 214 PANTHER PTHR30614 4 204 2.8E-77 T 14-09-2016 PAJ_RS12910 d793714d8b1cd24ecf320b62af1e103c 214 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 9 106 7.5E-30 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS12910 d793714d8b1cd24ecf320b62af1e103c 214 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 206 7.7E-20 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12910 d793714d8b1cd24ecf320b62af1e103c 214 SUPERFAMILY SSF161098 10 203 4.97E-46 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12910 d793714d8b1cd24ecf320b62af1e103c 214 Gene3D G3DSA:1.10.3720.10 9 206 1.4E-48 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS14060 9e10533c62542fb85eeb61aad5fc468f 333 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 215 254 4.3E-12 T 14-09-2016 IPR011964 YVTN beta-propeller repeat PAJ_RS14060 9e10533c62542fb85eeb61aad5fc468f 333 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 256 296 5.3E-12 T 14-09-2016 IPR011964 YVTN beta-propeller repeat PAJ_RS14060 9e10533c62542fb85eeb61aad5fc468f 333 Gene3D G3DSA:2.130.10.10 67 329 8.0E-59 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PAJ_RS14060 9e10533c62542fb85eeb61aad5fc468f 333 Gene3D G3DSA:2.130.10.10 31 66 9.0E-6 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PAJ_RS14060 9e10533c62542fb85eeb61aad5fc468f 333 PANTHER PTHR13833 80 315 5.2E-24 T 14-09-2016 PAJ_RS14060 9e10533c62542fb85eeb61aad5fc468f 333 SUPERFAMILY SSF51004 37 330 7.59E-64 T 14-09-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain PAJ_RS14060 9e10533c62542fb85eeb61aad5fc468f 333 Pfam PF10282 Lactonase, 7-bladed beta-propeller 80 196 2.7E-5 T 14-09-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 PAJ_RS14060 9e10533c62542fb85eeb61aad5fc468f 333 Pfam PF10282 Lactonase, 7-bladed beta-propeller 198 292 1.6E-6 T 14-09-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 PAJ_RS12820 8f84e52029354880a79c0787b05b7f11 371 Gene3D G3DSA:2.70.70.10 235 369 5.4E-42 T 14-09-2016 PAJ_RS12820 8f84e52029354880a79c0787b05b7f11 371 SMART SM00257 119 163 1.1E-9 T 14-09-2016 IPR018392 LysM domain PAJ_RS12820 8f84e52029354880a79c0787b05b7f11 371 Gene3D G3DSA:3.10.350.10 118 162 4.4E-11 T 14-09-2016 IPR018392 LysM domain PAJ_RS12820 8f84e52029354880a79c0787b05b7f11 371 PANTHER PTHR21666 248 369 1.1E-62 T 14-09-2016 PAJ_RS12820 8f84e52029354880a79c0787b05b7f11 371 Pfam PF01476 LysM domain 120 162 2.0E-9 T 14-09-2016 IPR018392 LysM domain PAJ_RS12820 8f84e52029354880a79c0787b05b7f11 371 PANTHER PTHR21666:SF222 248 369 1.1E-62 T 14-09-2016 PAJ_RS12820 8f84e52029354880a79c0787b05b7f11 371 Pfam PF01551 Peptidase family M23 271 364 8.0E-32 T 14-09-2016 IPR016047 Peptidase M23 PAJ_RS12820 8f84e52029354880a79c0787b05b7f11 371 SUPERFAMILY SSF51261 119 368 4.55E-52 T 14-09-2016 IPR011055 Duplicated hybrid motif PAJ_RS19105 23c5387c7ae0b42af01ff861bd9576a0 303 SUPERFAMILY SSF53697 7 251 1.36E-74 T 14-09-2016 PAJ_RS19105 23c5387c7ae0b42af01ff861bd9576a0 303 Gene3D G3DSA:3.40.50.10490 7 251 1.0E-93 T 14-09-2016 PAJ_RS19105 23c5387c7ae0b42af01ff861bd9576a0 303 PANTHER PTHR10088 5 299 2.2E-155 T 14-09-2016 PAJ_RS19105 23c5387c7ae0b42af01ff861bd9576a0 303 PANTHER PTHR10088:SF5 5 299 2.2E-155 T 14-09-2016 PAJ_RS19105 23c5387c7ae0b42af01ff861bd9576a0 303 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 8 297 2.7E-134 T 14-09-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|UniPathway: UPA00342 PAJ_RS19105 23c5387c7ae0b42af01ff861bd9576a0 303 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 4 297 43.243 T 14-09-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|UniPathway: UPA00342 PAJ_RS19105 23c5387c7ae0b42af01ff861bd9576a0 303 Pfam PF13580 SIS domain 43 167 1.0E-10 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS19105 23c5387c7ae0b42af01ff861bd9576a0 303 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 187 204 - T 14-09-2016 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|UniPathway: UPA00342 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 PANTHER PTHR13789 1 170 2.9E-84 T 14-09-2016 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 Pfam PF02254 TrkA-N domain 3 115 9.1E-30 T 14-09-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 Pfam PF02254 TrkA-N domain 235 350 2.6E-27 T 14-09-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 Gene3D G3DSA:3.40.50.720 1 152 7.3E-50 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 Gene3D G3DSA:3.40.50.720 233 376 4.3E-38 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 SUPERFAMILY SSF116726 148 226 4.58E-9 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 PANTHER PTHR13789 416 440 2.9E-84 T 14-09-2016 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 SUPERFAMILY SSF51735 1 152 9.21E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 9.8E-36 T 14-09-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 9.8E-36 T 14-09-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 9.8E-36 T 14-09-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 9.8E-36 T 14-09-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 9.8E-36 T 14-09-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 PANTHER PTHR13789:SF225 416 440 2.9E-84 T 14-09-2016 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 PANTHER PTHR13789:SF225 1 170 2.9E-84 T 14-09-2016 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 SUPERFAMILY SSF116726 391 443 2.88E-7 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 Gene3D G3DSA:3.30.70.1450 391 437 5.1E-4 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 Pfam PF02080 TrkA-C domain 157 225 4.3E-11 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 Pfam PF02080 TrkA-C domain 391 451 8.5E-11 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PAJ_RS15705 c8ff3ae8587b731863e12429df7f9a6a 458 SUPERFAMILY SSF51735 232 376 5.2E-34 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10690 d48ae3868298bb022f43ccc78e41c294 341 Gene3D G3DSA:3.40.190.10 22 136 3.7E-5 T 14-09-2016 PAJ_RS10690 d48ae3868298bb022f43ccc78e41c294 341 Gene3D G3DSA:3.40.190.10 137 281 6.6E-40 T 14-09-2016 PAJ_RS10690 d48ae3868298bb022f43ccc78e41c294 341 PANTHER PTHR30222 1 341 9.6E-169 T 14-09-2016 PAJ_RS10690 d48ae3868298bb022f43ccc78e41c294 341 SUPERFAMILY SSF53850 22 338 9.67E-68 T 14-09-2016 PAJ_RS10690 d48ae3868298bb022f43ccc78e41c294 341 Pfam PF13416 Bacterial extracellular solute-binding protein 52 294 1.9E-39 T 14-09-2016 PAJ_RS10690 d48ae3868298bb022f43ccc78e41c294 341 PANTHER PTHR30222:SF2 1 341 9.6E-169 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 SUPERFAMILY SSF52540 72 290 1.27E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 Pfam PF13481 AAA domain 76 225 1.8E-14 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 Pfam PF13541 Subunit ChlI of Mg-chelatase 348 433 2.1E-9 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 SMART SM00382 94 248 2.8E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 Gene3D G3DSA:3.40.50.300 62 280 1.1E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 PANTHER PTHR32472 5 457 1.1E-223 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 454 1.5E-236 T 14-09-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 PRINTS PR01874 DNA repair protein radA signature 127 144 8.1E-94 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 PRINTS PR01874 DNA repair protein radA signature 177 201 8.1E-94 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 PRINTS PR01874 DNA repair protein radA signature 325 348 8.1E-94 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 PRINTS PR01874 DNA repair protein radA signature 251 277 8.1E-94 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 PRINTS PR01874 DNA repair protein radA signature 11 35 8.1E-94 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 PRINTS PR01874 DNA repair protein radA signature 86 114 8.1E-94 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 PRINTS PR01874 DNA repair protein radA signature 216 244 8.1E-94 T 14-09-2016 PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 Gene3D G3DSA:3.30.230.10 288 457 2.6E-38 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 SUPERFAMILY SSF54211 258 272 3.75E-42 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS20750 d4f0ec6545b8436a383044aa0a14c4e1 460 SUPERFAMILY SSF54211 306 457 3.75E-42 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS02370 249a794c892def4c0d8d43868b51d20d 382 SUPERFAMILY SSF56796 9 377 3.14E-70 T 14-09-2016 PAJ_RS02370 249a794c892def4c0d8d43868b51d20d 382 Gene3D G3DSA:1.20.1090.10 186 378 2.1E-29 T 14-09-2016 PAJ_RS02370 249a794c892def4c0d8d43868b51d20d 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 356 1.1E-75 T 14-09-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 PAJ_RS02370 249a794c892def4c0d8d43868b51d20d 382 Gene3D G3DSA:3.40.50.1970 7 185 6.8E-40 T 14-09-2016 PAJ_RS02370 249a794c892def4c0d8d43868b51d20d 382 PANTHER PTHR11496 12 382 1.5E-63 T 14-09-2016 PAJ_RS11955 f9f89afaad7970d0989000628e295ecc 382 PANTHER PTHR23522 1 377 3.6E-128 T 14-09-2016 PAJ_RS11955 f9f89afaad7970d0989000628e295ecc 382 PANTHER PTHR23522:SF3 1 377 3.6E-128 T 14-09-2016 PAJ_RS11955 f9f89afaad7970d0989000628e295ecc 382 SUPERFAMILY SSF103473 8 374 4.05E-36 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS11955 f9f89afaad7970d0989000628e295ecc 382 PIRSF PIRSF004925 1 382 2.0E-112 T 14-09-2016 IPR026032 Probable 3-phenylpropionic acid transporter PAJ_RS11955 f9f89afaad7970d0989000628e295ecc 382 Gene3D G3DSA:1.20.1250.20 8 187 2.0E-14 T 14-09-2016 PAJ_RS11955 f9f89afaad7970d0989000628e295ecc 382 Gene3D G3DSA:1.20.1250.20 201 374 3.5E-22 T 14-09-2016 PAJ_RS11955 f9f89afaad7970d0989000628e295ecc 382 Pfam PF12832 MFS_1 like family 9 359 7.6E-41 T 14-09-2016 IPR024989 Major facilitator superfamily associated domain PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 Gene3D G3DSA:1.10.1660.10 56 131 2.3E-25 T 14-09-2016 PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 SUPERFAMILY SSF46955 1 126 1.32E-33 T 14-09-2016 IPR009061 Putative DNA-binding domain PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 Gene3D G3DSA:1.10.1660.10 1 55 4.6E-22 T 14-09-2016 PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.2E-6 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.2E-6 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.2E-6 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 Pfam PF13411 MerR HTH family regulatory protein 1 66 2.0E-17 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 SMART SM00422 1 70 4.8E-26 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 PANTHER PTHR30204 1 130 5.5E-73 T 14-09-2016 PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 PANTHER PTHR30204:SF16 1 130 5.5E-73 T 14-09-2016 PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS01950 eb62d112c2bce584725be0b262109ab2 138 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 7.2E-57 T 14-09-2016 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 PAJ_RS18335 4d7390bc47b4b2a6bb79edf363fffadd 246 PANTHER PTHR34136:SF1 2 240 2.4E-87 T 14-09-2016 PAJ_RS18335 4d7390bc47b4b2a6bb79edf363fffadd 246 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 65 231 2.6E-51 T 14-09-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 PAJ_RS18335 4d7390bc47b4b2a6bb79edf363fffadd 246 Hamap MF_01001 UDP-N-acetyl-D-mannosaminuronic acid transferase [wecG]. 1 246 58.321 T 14-09-2016 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase GO:0009246|GO:0016758 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 PAJ_RS18335 4d7390bc47b4b2a6bb79edf363fffadd 246 PANTHER PTHR34136 2 240 2.4E-87 T 14-09-2016 PAJ_RS18335 4d7390bc47b4b2a6bb79edf363fffadd 246 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 62 237 2.0E-68 T 14-09-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 PAJ_RS13955 521d68ac32628d1166730e2aa2fbc1e4 314 SUPERFAMILY SSF160940 3 279 9.29E-121 T 14-09-2016 PAJ_RS13955 521d68ac32628d1166730e2aa2fbc1e4 314 Pfam PF06924 Protein of unknown function (DUF1281) 9 141 2.8E-49 T 14-09-2016 IPR009694 Protein of unknown function DUF1281 PAJ_RS13955 521d68ac32628d1166730e2aa2fbc1e4 314 Gene3D G3DSA:3.30.70.1270 194 275 3.2E-38 T 14-09-2016 PAJ_RS13955 521d68ac32628d1166730e2aa2fbc1e4 314 Gene3D G3DSA:1.10.3530.10 31 193 9.8E-72 T 14-09-2016 IPR023136 Api92-like domain PAJ_RS15505 0c0ca2679589bfe794108aed2434307d 310 Gene3D G3DSA:2.40.50.100 154 187 4.9E-17 T 14-09-2016 PAJ_RS15505 0c0ca2679589bfe794108aed2434307d 310 Gene3D G3DSA:2.40.50.100 47 80 4.9E-17 T 14-09-2016 PAJ_RS15505 0c0ca2679589bfe794108aed2434307d 310 PANTHER PTHR30367:SF3 1 308 1.5E-170 T 14-09-2016 PAJ_RS15505 0c0ca2679589bfe794108aed2434307d 310 Hamap MF_01544 p-hydroxybenzoic acid efflux pump subunit AaeA [aaeA]. 1 310 54.365 T 14-09-2016 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA PAJ_RS15505 0c0ca2679589bfe794108aed2434307d 310 PANTHER PTHR30367 1 308 1.5E-170 T 14-09-2016 PAJ_RS15505 0c0ca2679589bfe794108aed2434307d 310 SUPERFAMILY SSF111369 44 243 9.68E-23 T 14-09-2016 PAJ_RS15505 0c0ca2679589bfe794108aed2434307d 310 Pfam PF13437 HlyD family secretion protein 156 238 6.6E-9 T 14-09-2016 PAJ_RS15505 0c0ca2679589bfe794108aed2434307d 310 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 241 9.2E-32 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS15505 0c0ca2679589bfe794108aed2434307d 310 Pfam PF13533 Biotin-lipoyl like 47 94 1.9E-17 T 14-09-2016 PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 PANTHER PTHR24220:SF308 13 391 2.5E-145 T 14-09-2016 PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 SUPERFAMILY SSF52540 10 234 1.43E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 SUPERFAMILY SSF52540 252 491 6.57E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 Gene3D G3DSA:3.40.50.300 255 498 4.9E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 ProSitePatterns PS00211 ABC transporters family signature. 409 423 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 PANTHER PTHR24220 13 391 2.5E-145 T 14-09-2016 PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 Pfam PF00005 ABC transporter 27 176 6.1E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 Pfam PF00005 ABC transporter 279 436 2.5E-21 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 SMART SM00382 36 224 1.6E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 SMART SM00382 288 485 1.1E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS05635 a7e7768d409f5e739fba5ad4996e8494 508 Gene3D G3DSA:3.40.50.300 8 233 1.7E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 PANTHER PTHR30195 491 820 8.8E-140 T 14-09-2016 PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 129 201 3.0E-10 T 14-09-2016 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 Gene3D G3DSA:3.40.50.300 299 515 7.9E-16 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 PANTHER PTHR30195:SF13 491 820 8.8E-140 T 14-09-2016 PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 PANTHER PTHR30195:SF13 3 463 8.8E-140 T 14-09-2016 PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 SMART SM00487 307 542 7.5E-10 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 PANTHER PTHR30195:SF13 854 1006 8.8E-140 T 14-09-2016 PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 PANTHER PTHR30195 3 463 8.8E-140 T 14-09-2016 PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 SUPERFAMILY SSF52540 501 571 1.86E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 SUPERFAMILY SSF52540 273 473 1.86E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 Pfam PF04851 Type III restriction enzyme, res subunit 311 472 1.1E-13 T 14-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 PAJ_RS20270 2325407eb8161cc018891f6bb9414b42 1082 PANTHER PTHR30195 854 1006 8.8E-140 T 14-09-2016 PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 94 109 - T 14-09-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 311 331 5.6E-7 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 294 311 5.6E-7 T 14-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 SUPERFAMILY SSF52540 8 240 1.05E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 SMART SM00382 28 180 2.1E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 Pfam PF00158 Sigma-54 interaction domain 8 170 1.1E-60 T 14-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 PANTHER PTHR32071 1 334 2.9E-222 T 14-09-2016 PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 Gene3D G3DSA:1.10.8.60 180 232 2.5E-21 T 14-09-2016 PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 PANTHER PTHR32071:SF38 1 334 2.9E-222 T 14-09-2016 PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 222 231 - T 14-09-2016 IPR025944 Sigma-54 interaction domain, conserved site PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 Gene3D G3DSA:3.40.50.300 5 179 4.5E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 Gene3D G3DSA:1.10.10.60 233 330 9.7E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 8 328 2.8E-160 T 14-09-2016 IPR014317 Transcription activator PspF PAJ_RS07495 510f4c5d3db4c793f10e17ee9fc1345d 337 SUPERFAMILY SSF46689 222 330 1.12E-6 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06640 1172c284d8604f2385a57a7ca9fb41cb 209 PANTHER PTHR23416 13 84 1.6E-44 T 14-09-2016 PAJ_RS06640 1172c284d8604f2385a57a7ca9fb41cb 209 PANTHER PTHR23416 104 204 1.6E-44 T 14-09-2016 PAJ_RS06640 1172c284d8604f2385a57a7ca9fb41cb 209 PANTHER PTHR23416:SF61 13 84 1.6E-44 T 14-09-2016 PAJ_RS06640 1172c284d8604f2385a57a7ca9fb41cb 209 Gene3D G3DSA:2.160.10.10 20 204 1.2E-50 T 14-09-2016 PAJ_RS06640 1172c284d8604f2385a57a7ca9fb41cb 209 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 122 150 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS06640 1172c284d8604f2385a57a7ca9fb41cb 209 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 114 148 6.8E-10 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS06640 1172c284d8604f2385a57a7ca9fb41cb 209 TIGRFAM TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family 13 208 1.6E-73 T 14-09-2016 IPR017694 Phosphonate metabolim protein, transferase hexapeptide repeat family PAJ_RS06640 1172c284d8604f2385a57a7ca9fb41cb 209 PANTHER PTHR23416:SF61 104 204 1.6E-44 T 14-09-2016 PAJ_RS06640 1172c284d8604f2385a57a7ca9fb41cb 209 SUPERFAMILY SSF51161 21 204 8.73E-43 T 14-09-2016 IPR011004 Trimeric LpxA-like PAJ_RS09040 b9565f19bd59109d59a5282402e2ea15 320 PANTHER PTHR11108 6 317 1.1E-113 T 14-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 PAJ_RS09040 b9565f19bd59109d59a5282402e2ea15 320 ProSitePatterns PS00534 Ferrochelatase signature. 189 207 - T 14-09-2016 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 PAJ_RS09040 b9565f19bd59109d59a5282402e2ea15 320 TIGRFAM TIGR00109 hemH: ferrochelatase 3 315 6.1E-102 T 14-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 PAJ_RS09040 b9565f19bd59109d59a5282402e2ea15 320 Pfam PF00762 Ferrochelatase 4 317 1.7E-101 T 14-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 PAJ_RS09040 b9565f19bd59109d59a5282402e2ea15 320 Gene3D G3DSA:3.40.50.1400 3 200 1.4E-61 T 14-09-2016 PAJ_RS09040 b9565f19bd59109d59a5282402e2ea15 320 Gene3D G3DSA:3.40.50.1400 201 317 5.6E-31 T 14-09-2016 PAJ_RS09040 b9565f19bd59109d59a5282402e2ea15 320 SUPERFAMILY SSF53800 1 317 4.97E-96 T 14-09-2016 PAJ_RS09040 b9565f19bd59109d59a5282402e2ea15 320 Hamap MF_00323 Ferrochelatase [hemH]. 3 320 36.025 T 14-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 Pfam PF00364 Biotin-requiring enzyme 4 73 4.5E-22 T 14-09-2016 IPR000089 Biotin/lipoyl attachment PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 Pfam PF00364 Biotin-requiring enzyme 209 278 3.5E-21 T 14-09-2016 IPR000089 Biotin/lipoyl attachment PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 Pfam PF00364 Biotin-requiring enzyme 107 177 9.3E-21 T 14-09-2016 IPR000089 Biotin/lipoyl attachment PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 Gene3D G3DSA:2.40.50.100 1 94 2.3E-22 T 14-09-2016 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 PANTHER PTHR23151:SF68 206 634 1.2E-261 T 14-09-2016 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 Gene3D G3DSA:3.30.559.10 393 634 1.5E-83 T 14-09-2016 IPR023213 Chloramphenicol acetyltransferase-like domain PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 Pfam PF02817 e3 binding domain 330 365 1.4E-15 T 14-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 230 259 - T 14-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 129 158 - T 14-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 SUPERFAMILY SSF47005 324 369 1.44E-13 T 14-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 PANTHER PTHR23151:SF68 21 109 1.2E-261 T 14-09-2016 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 403 633 2.5E-79 T 14-09-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 SUPERFAMILY SSF51230 1 94 2.75E-23 T 14-09-2016 IPR011053 Single hybrid motif PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 PANTHER PTHR23151 206 634 1.2E-261 T 14-09-2016 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 Gene3D G3DSA:2.40.50.100 209 283 5.8E-22 T 14-09-2016 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 Gene3D G3DSA:2.40.50.100 108 182 2.0E-21 T 14-09-2016 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 Gene3D G3DSA:4.10.320.10 323 370 1.1E-22 T 14-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 14-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 SUPERFAMILY SSF51230 207 299 2.36E-23 T 14-09-2016 IPR011053 Single hybrid motif PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 SUPERFAMILY SSF52777 392 633 5.78E-80 T 14-09-2016 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 PANTHER PTHR23151 21 109 1.2E-261 T 14-09-2016 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 195 634 3.7E-226 T 14-09-2016 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 PAJ_RS00450 aafbfa2d8a8024164be3c88cd4bb012e 634 SUPERFAMILY SSF51230 106 195 2.75E-22 T 14-09-2016 IPR011053 Single hybrid motif PAJ_RS01030 12ac1d15ed2f1121e2ff6ccd4738a07e 243 Pfam PF00005 ABC transporter 19 167 5.1E-35 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS01030 12ac1d15ed2f1121e2ff6ccd4738a07e 243 SMART SM00382 28 215 5.8E-17 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01030 12ac1d15ed2f1121e2ff6ccd4738a07e 243 PANTHER PTHR24220 5 242 6.2E-153 T 14-09-2016 PAJ_RS01030 12ac1d15ed2f1121e2ff6ccd4738a07e 243 PIRSF PIRSF039085 1 243 2.6E-111 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PAJ_RS01030 12ac1d15ed2f1121e2ff6ccd4738a07e 243 SUPERFAMILY SSF52540 3 236 2.18E-78 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01030 12ac1d15ed2f1121e2ff6ccd4738a07e 243 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS01030 12ac1d15ed2f1121e2ff6ccd4738a07e 243 Gene3D G3DSA:3.40.50.300 1 239 1.0E-82 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01030 12ac1d15ed2f1121e2ff6ccd4738a07e 243 PANTHER PTHR24220:SF550 5 242 6.2E-153 T 14-09-2016 PAJ_RS14855 f157b2d01877b1027b84a8d8184ea3ba 91 Pfam PF10798 Biofilm development protein YmgB/AriR 30 84 3.1E-22 T 14-09-2016 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 PAJ_RS14855 f157b2d01877b1027b84a8d8184ea3ba 91 ProDom PD865043 PLASMID SPA-ORF10 3'REGION CYTOPLASMIC ORF-10 SPAS STY1854 46 84 0.001 T 14-09-2016 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 Pfam PF01266 FAD dependent oxidoreductase 27 383 1.5E-57 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 PANTHER PTHR13847:SF196 1 385 4.0E-77 T 14-09-2016 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 Gene3D G3DSA:3.50.50.60 18 116 4.5E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 Gene3D G3DSA:3.50.50.60 347 390 4.5E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 Gene3D G3DSA:3.50.50.60 173 250 4.5E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 PANTHER PTHR13847 1 385 4.0E-77 T 14-09-2016 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 27 49 1.0E-5 T 14-09-2016 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 205 220 1.0E-5 T 14-09-2016 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 Gene3D G3DSA:3.30.9.10 251 345 2.0E-5 T 14-09-2016 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 Gene3D G3DSA:3.30.9.10 121 172 2.0E-5 T 14-09-2016 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 SUPERFAMILY SSF51905 26 252 4.4E-46 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09510 2217b22cc1a09c6569c9fd8bc2d65b68 425 SUPERFAMILY SSF51905 347 397 4.4E-46 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07470 03655303a2a905dc6192538969d2dd3d 465 Pfam PF04317 YcjX-like family, DUF463 20 464 6.5E-190 T 14-09-2016 IPR007413 Protein of unknown function DUF463, YcjX-like protein PAJ_RS07470 03655303a2a905dc6192538969d2dd3d 465 PANTHER PTHR38605 1 465 3.3E-255 T 14-09-2016 PAJ_RS07470 03655303a2a905dc6192538969d2dd3d 465 PANTHER PTHR38605:SF1 1 465 3.3E-255 T 14-09-2016 PAJ_RS07470 03655303a2a905dc6192538969d2dd3d 465 PIRSF PIRSF019381 1 465 4.4E-216 T 14-09-2016 IPR007413 Protein of unknown function DUF463, YcjX-like protein PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 PANTHER PTHR32089:SF63 161 514 3.7E-106 T 14-09-2016 PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 181 1.7E-10 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 Gene3D G3DSA:1.10.287.950 280 485 9.9E-54 T 14-09-2016 PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 1.7E-50 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 7 1.7E-50 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 1.7E-50 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 1.7E-50 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 1.7E-50 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 PANTHER PTHR32089 161 514 3.7E-106 T 14-09-2016 PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 SUPERFAMILY SSF58104 242 514 4.19E-63 T 14-09-2016 PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 291 313 - T 14-09-2016 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 SMART SM00283 266 513 5.2E-77 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS20350 904f1d26fc4aa652afd029a70abdacb1 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 512 4.5E-55 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS12770 395fbfb734f0c4384f92274e79531796 151 Pfam PF02631 RecX family 37 147 3.5E-30 T 14-09-2016 IPR003783 Regulatory protein RecX GO:0006282 PAJ_RS12770 395fbfb734f0c4384f92274e79531796 151 Gene3D G3DSA:1.10.10.10 55 100 3.5E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12770 395fbfb734f0c4384f92274e79531796 151 Hamap MF_01114 Regulatory protein RecX [recX]. 1 151 12.162 T 14-09-2016 IPR003783 Regulatory protein RecX GO:0006282 PAJ_RS12770 395fbfb734f0c4384f92274e79531796 151 Gene3D G3DSA:1.10.10.10 101 151 1.2E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12770 395fbfb734f0c4384f92274e79531796 151 PANTHER PTHR33602 1 151 6.1E-39 T 14-09-2016 PAJ_RS12770 395fbfb734f0c4384f92274e79531796 151 Gene3D G3DSA:1.10.10.10 1 54 2.8E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12770 395fbfb734f0c4384f92274e79531796 151 PANTHER PTHR33602:SF1 1 151 6.1E-39 T 14-09-2016 PAJ_RS15535 056f2110c55e3172f3a7f9378130714d 193 SUPERFAMILY SSF52972 2 183 7.85E-60 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PAJ_RS15535 056f2110c55e3172f3a7f9378130714d 193 Pfam PF02545 Maf-like protein 4 184 5.7E-58 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 PAJ_RS15535 056f2110c55e3172f3a7f9378130714d 193 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 181 1.2E-62 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 PAJ_RS15535 056f2110c55e3172f3a7f9378130714d 193 PIRSF PIRSF006305 1 190 5.7E-51 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 PAJ_RS15535 056f2110c55e3172f3a7f9378130714d 193 Gene3D G3DSA:3.90.950.10 2 185 3.5E-68 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PAJ_RS15535 056f2110c55e3172f3a7f9378130714d 193 Hamap MF_00528 Septum formation protein Maf [maf]. 3 189 30.887 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 PAJ_RS15535 056f2110c55e3172f3a7f9378130714d 193 PANTHER PTHR11746 119 181 7.9E-15 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 Gene3D G3DSA:3.40.710.10 422 611 1.6E-128 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 Gene3D G3DSA:3.40.710.10 233 313 1.6E-128 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 Gene3D G3DSA:3.40.710.10 672 832 1.6E-128 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 SUPERFAMILY SSF53955 43 256 1.07E-79 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 Pfam PF00912 Transglycosylase 55 229 1.9E-63 T 14-09-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 PANTHER PTHR32282:SF5 671 750 2.2E-282 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 SUPERFAMILY SSF56601 422 610 6.04E-109 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 SUPERFAMILY SSF56601 211 233 6.04E-109 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 SUPERFAMILY SSF56601 262 313 6.04E-109 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 SUPERFAMILY SSF56601 671 833 6.04E-109 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 Pfam PF00905 Penicillin binding protein transpeptidase domain 429 605 3.2E-23 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 784 1.6E-169 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 PANTHER PTHR32282 421 612 2.2E-282 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 PANTHER PTHR32282 766 843 2.2E-282 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 Gene3D G3DSA:1.10.3810.10 56 232 1.1E-74 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 PANTHER PTHR32282:SF5 766 843 2.2E-282 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 Pfam PF17092 Penicillin-binding protein OB-like domain 316 425 7.9E-31 T 14-09-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 PANTHER PTHR32282 671 750 2.2E-282 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 PANTHER PTHR32282 2 310 2.2E-282 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 PANTHER PTHR32282:SF5 421 612 2.2E-282 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 PANTHER PTHR32282:SF5 2 310 2.2E-282 T 14-09-2016 PAJ_RS16105 063346f301b0011358a89358a6876e8f 850 Gene3D G3DSA:2.40.50.140 347 421 4.5E-22 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15075 286d9a858897f7caf213f5341df732d4 286 SUPERFAMILY SSF53790 13 232 1.06E-80 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PAJ_RS15075 286d9a858897f7caf213f5341df732d4 286 PIRSF PIRSF005917 2 286 1.6E-103 T 14-09-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS15075 286d9a858897f7caf213f5341df732d4 286 Gene3D G3DSA:3.40.1010.10 13 121 1.1E-15 T 14-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PAJ_RS15075 286d9a858897f7caf213f5341df732d4 286 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 283 4.8E-107 T 14-09-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS15075 286d9a858897f7caf213f5341df732d4 286 PANTHER PTHR21091:SF18 12 239 2.5E-90 T 14-09-2016 PAJ_RS15075 286d9a858897f7caf213f5341df732d4 286 PANTHER PTHR21091 12 239 2.5E-90 T 14-09-2016 PAJ_RS15075 286d9a858897f7caf213f5341df732d4 286 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 205 1.2E-26 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PAJ_RS15075 286d9a858897f7caf213f5341df732d4 286 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 14-09-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS15075 286d9a858897f7caf213f5341df732d4 286 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 37.367 T 14-09-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PAJ_RS15075 286d9a858897f7caf213f5341df732d4 286 Gene3D G3DSA:3.30.950.10 122 235 1.5E-40 T 14-09-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 PAJ_RS18250 e802ac98a58e08ebff8c8cf9a90255e2 93 SUPERFAMILY SSF54534 6 91 1.11E-26 T 14-09-2016 PAJ_RS18250 e802ac98a58e08ebff8c8cf9a90255e2 93 Gene3D G3DSA:3.10.50.40 4 92 5.2E-33 T 14-09-2016 PAJ_RS18250 e802ac98a58e08ebff8c8cf9a90255e2 93 Pfam PF00639 PPIC-type PPIASE domain 15 89 1.0E-19 T 14-09-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 PAJ_RS18250 e802ac98a58e08ebff8c8cf9a90255e2 93 PANTHER PTHR10657 4 92 4.7E-32 T 14-09-2016 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 Gene3D G3DSA:3.20.20.70 4 259 5.1E-102 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 4 255 35.48 T 14-09-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 SUPERFAMILY SSF51366 4 252 2.59E-82 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 PANTHER PTHR22854:SF2 2 283 1.5E-139 T 14-09-2016 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 258 447 6.4E-58 T 14-09-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 Pfam PF00218 Indole-3-glycerol phosphate synthase 6 252 9.4E-97 T 14-09-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 51 69 - T 14-09-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 SUPERFAMILY SSF51366 258 451 6.12E-58 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 PANTHER PTHR22854 2 283 1.5E-139 T 14-09-2016 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 259 453 30.722 T 14-09-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 PAJ_RS07710 24a35356f51cd2c4d98cc155f09bff97 453 Gene3D G3DSA:3.20.20.70 260 446 1.2E-63 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS16335 f198df1931e072270566a7bc2cdfd549 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 4.5E-66 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS16335 f198df1931e072270566a7bc2cdfd549 308 PANTHER PTHR11795 7 308 7.5E-148 T 14-09-2016 PAJ_RS16335 f198df1931e072270566a7bc2cdfd549 308 PANTHER PTHR11795:SF371 7 308 7.5E-148 T 14-09-2016 PAJ_RS19550 2d66af4ba86805a96334b35e147e404d 332 PANTHER PTHR22916 1 293 1.2E-47 T 14-09-2016 PAJ_RS19550 2d66af4ba86805a96334b35e147e404d 332 Pfam PF00535 Glycosyl transferase family 2 11 139 1.3E-26 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS19550 2d66af4ba86805a96334b35e147e404d 332 PANTHER PTHR22916:SF24 1 293 1.2E-47 T 14-09-2016 PAJ_RS19550 2d66af4ba86805a96334b35e147e404d 332 SUPERFAMILY SSF53448 8 235 2.06E-43 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS19550 2d66af4ba86805a96334b35e147e404d 332 Gene3D G3DSA:3.90.550.10 7 201 7.6E-42 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS07850 9dc73b68eb67bc4d6f155887a86c79c6 303 PANTHER PTHR14226 206 303 1.5E-117 T 14-09-2016 PAJ_RS07850 9dc73b68eb67bc4d6f155887a86c79c6 303 Pfam PF01734 Patatin-like phospholipase 8 165 6.1E-24 T 14-09-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 PAJ_RS07850 9dc73b68eb67bc4d6f155887a86c79c6 303 PANTHER PTHR14226:SF24 206 303 1.5E-117 T 14-09-2016 PAJ_RS07850 9dc73b68eb67bc4d6f155887a86c79c6 303 PANTHER PTHR14226:SF24 1 189 1.5E-117 T 14-09-2016 PAJ_RS07850 9dc73b68eb67bc4d6f155887a86c79c6 303 SUPERFAMILY SSF52151 1 299 2.88E-57 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PAJ_RS07850 9dc73b68eb67bc4d6f155887a86c79c6 303 PANTHER PTHR14226 1 189 1.5E-117 T 14-09-2016 PAJ_RS07850 9dc73b68eb67bc4d6f155887a86c79c6 303 Gene3D G3DSA:3.40.1090.10 8 170 1.4E-7 T 14-09-2016 PAJ_RS04605 13e5064231646a4a7a7baeebbef5ea66 198 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 10 194 8.7E-50 T 14-09-2016 IPR014094 Penicillin-binding protein activator LpoB PAJ_RS04605 13e5064231646a4a7a7baeebbef5ea66 198 Hamap MF_01889 Penicillin-binding protein activator LpoB [lpoB]. 4 197 35.024 T 14-09-2016 IPR014094 Penicillin-binding protein activator LpoB PAJ_RS04605 13e5064231646a4a7a7baeebbef5ea66 198 Pfam PF13036 Peptidoglycan-synthase activator LpoB 11 194 1.5E-46 T 14-09-2016 IPR014094 Penicillin-binding protein activator LpoB PAJ_RS04605 13e5064231646a4a7a7baeebbef5ea66 198 PANTHER PTHR40593 1 197 3.8E-61 T 14-09-2016 PAJ_RS09965 25b95ff9ae319f44f1cb16ab31deb699 477 Gene3D G3DSA:3.40.50.720 147 232 2.6E-4 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09965 25b95ff9ae319f44f1cb16ab31deb699 477 Pfam PF13727 CoA-binding domain 86 205 1.2E-8 T 14-09-2016 PAJ_RS09965 25b95ff9ae319f44f1cb16ab31deb699 477 Pfam PF02397 Bacterial sugar transferase 281 471 2.3E-55 T 14-09-2016 IPR003362 Bacterial sugar transferase PAJ_RS09965 25b95ff9ae319f44f1cb16ab31deb699 477 PANTHER PTHR30576 14 477 7.4E-175 T 14-09-2016 PAJ_RS09965 25b95ff9ae319f44f1cb16ab31deb699 477 PANTHER PTHR30576:SF4 14 477 7.4E-175 T 14-09-2016 PAJ_RS09965 25b95ff9ae319f44f1cb16ab31deb699 477 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 21 477 5.7E-117 T 14-09-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase PAJ_RS09965 25b95ff9ae319f44f1cb16ab31deb699 477 TIGRFAM TIGR03022 WbaP_sugtrans: undecaprenyl-phosphate galactose phosphotransferase WbaP 17 477 1.8E-162 T 14-09-2016 IPR017472 Undecaprenyl-phosphate galactose phosphotransferase, WbaP GO:0000271|GO:0005886|GO:0016021|GO:0016740 PAJ_RS11165 163f58b50e7d8a0180fbef0fa7e8903b 411 Gene3D G3DSA:3.40.640.10 50 263 2.3E-63 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS11165 163f58b50e7d8a0180fbef0fa7e8903b 411 PANTHER PTHR11751:SF302 18 401 9.1E-269 T 14-09-2016 PAJ_RS11165 163f58b50e7d8a0180fbef0fa7e8903b 411 Gene3D G3DSA:3.90.1150.10 264 395 3.8E-44 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS11165 163f58b50e7d8a0180fbef0fa7e8903b 411 SUPERFAMILY SSF53383 9 394 4.03E-107 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS11165 163f58b50e7d8a0180fbef0fa7e8903b 411 Pfam PF00155 Aminotransferase class I and II 37 382 7.3E-59 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS11165 163f58b50e7d8a0180fbef0fa7e8903b 411 PANTHER PTHR11751 18 401 9.1E-269 T 14-09-2016 PAJ_RS04900 ac5d9dc03ee262b935bfb5d332064338 377 SUPERFAMILY SSF82861 100 183 3.4E-13 T 14-09-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 PAJ_RS04900 ac5d9dc03ee262b935bfb5d332064338 377 Gene3D G3DSA:3.30.70.100 253 340 1.9E-10 T 14-09-2016 PAJ_RS04900 ac5d9dc03ee262b935bfb5d332064338 377 SUPERFAMILY SSF82689 251 351 1.83E-18 T 14-09-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PAJ_RS04900 ac5d9dc03ee262b935bfb5d332064338 377 PANTHER PTHR30566 24 349 1.7E-63 T 14-09-2016 PAJ_RS04900 ac5d9dc03ee262b935bfb5d332064338 377 SUPERFAMILY SSF50182 185 249 3.6E-13 T 14-09-2016 IPR010920 LSM domain PAJ_RS04900 ac5d9dc03ee262b935bfb5d332064338 377 Gene3D G3DSA:2.30.30.60 200 249 5.5E-14 T 14-09-2016 PAJ_RS04900 ac5d9dc03ee262b935bfb5d332064338 377 PANTHER PTHR30566:SF5 24 349 1.7E-63 T 14-09-2016 PAJ_RS04900 ac5d9dc03ee262b935bfb5d332064338 377 Pfam PF00924 Mechanosensitive ion channel 143 342 1.5E-51 T 14-09-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PAJ_RS16210 e0e0cd60274672065908a5c63c30ba27 108 Pfam PF00581 Rhodanese-like domain 10 97 9.8E-13 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS16210 e0e0cd60274672065908a5c63c30ba27 108 SUPERFAMILY SSF52821 2 102 1.83E-25 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS16210 e0e0cd60274672065908a5c63c30ba27 108 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 28.414 T 14-09-2016 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 PAJ_RS16210 e0e0cd60274672065908a5c63c30ba27 108 SMART SM00450 7 101 6.2E-13 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS16210 e0e0cd60274672065908a5c63c30ba27 108 Gene3D G3DSA:3.40.250.10 3 101 4.7E-26 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS03600 10fdc38e6be55ce0f603470c28ee7c8d 246 PANTHER PTHR30352:SF9 1 246 5.8E-150 T 14-09-2016 PAJ_RS03600 10fdc38e6be55ce0f603470c28ee7c8d 246 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 6 237 2.8E-105 T 14-09-2016 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 PAJ_RS03600 10fdc38e6be55ce0f603470c28ee7c8d 246 Gene3D G3DSA:3.80.30.10 69 245 8.9E-70 T 14-09-2016 PAJ_RS03600 10fdc38e6be55ce0f603470c28ee7c8d 246 Pfam PF04055 Radical SAM superfamily 24 179 1.1E-30 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS03600 10fdc38e6be55ce0f603470c28ee7c8d 246 Pfam PF13353 4Fe-4S single cluster domain 16 125 9.3E-17 T 14-09-2016 PAJ_RS03600 10fdc38e6be55ce0f603470c28ee7c8d 246 PANTHER PTHR30352 1 246 5.8E-150 T 14-09-2016 PAJ_RS03600 10fdc38e6be55ce0f603470c28ee7c8d 246 SUPERFAMILY SSF102114 23 218 1.47E-23 T 14-09-2016 PAJ_RS03600 10fdc38e6be55ce0f603470c28ee7c8d 246 ProSitePatterns PS01087 Radical activating enzymes signature. 18 39 - T 14-09-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 PAJ_RS02490 7a898392532542420f315a2a2bd48763 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 118 7.0E-23 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS02490 7a898392532542420f315a2a2bd48763 225 Gene3D G3DSA:1.10.3720.10 14 222 1.6E-44 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS02490 7a898392532542420f315a2a2bd48763 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 223 1.2E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS02490 7a898392532542420f315a2a2bd48763 225 PANTHER PTHR30614:SF1 1 225 1.2E-135 T 14-09-2016 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM GO:0006865|GO:0016021|GO:0043190 PAJ_RS02490 7a898392532542420f315a2a2bd48763 225 SUPERFAMILY SSF161098 14 210 1.44E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS02490 7a898392532542420f315a2a2bd48763 225 PANTHER PTHR30614 1 225 1.2E-135 T 14-09-2016 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 SUPERFAMILY SSF52317 1036 1294 9.36E-100 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 2 1296 21.566 T 14-09-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 Gene3D G3DSA:3.30.1330.10 211 421 2.7E-39 T 14-09-2016 IPR016188 PurM-like, N-terminal domain PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 Gene3D G3DSA:3.30.1330.10 645 810 3.2E-15 T 14-09-2016 IPR016188 PurM-like, N-terminal domain PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 SUPERFAMILY SSF56042 822 1032 1.42E-55 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 SUPERFAMILY SSF109736 155 220 5.89E-21 T 14-09-2016 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 PANTHER PTHR10099 1 1296 0.0 T 14-09-2016 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1040 1293 1.2E-104 T 14-09-2016 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 SUPERFAMILY SSF55326 620 816 1.33E-65 T 14-09-2016 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 4 1294 0.0 T 14-09-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 432 588 3.6E-30 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 834 966 1.7E-13 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 SUPERFAMILY SSF82697 1 152 3.77E-53 T 14-09-2016 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 SMART SM01211 1040 1295 7.8E-161 T 14-09-2016 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 SUPERFAMILY SSF56042 431 615 5.38E-54 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 SUPERFAMILY SSF55326 221 428 1.85E-64 T 14-09-2016 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 PANTHER PTHR10099:SF5 1 1296 0.0 T 14-09-2016 PAJ_RS11990 6ec2c7d3b65b293438f44584545f6356 1296 Gene3D G3DSA:3.40.50.880 1041 1264 5.8E-12 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 Pfam PF00889 Elongation factor TS 71 263 7.0E-65 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 Gene3D G3DSA:3.30.479.20 227 262 1.1E-29 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 Gene3D G3DSA:3.30.479.20 143 178 1.1E-29 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 SUPERFAMILY SSF46934 4 54 5.71E-18 T 14-09-2016 IPR009060 UBA-like GO:0005515 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 SUPERFAMILY SSF54713 56 139 2.83E-20 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 Gene3D G3DSA:1.10.8.10 2 55 5.5E-27 T 14-09-2016 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 Hamap MF_00050 Elongation factor Ts [tsf]. 1 280 78.266 T 14-09-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 282 1.8E-117 T 14-09-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 SUPERFAMILY SSF54713 143 281 6.0E-52 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 14-09-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 Gene3D G3DSA:1.10.286.20 183 226 8.2E-20 T 14-09-2016 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 14-09-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 PAJ_RS00695 bacce0157a59adebcc93df64f1b5e00a 283 PANTHER PTHR11741 1 283 5.5E-140 T 14-09-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 PAJ_RS14405 5aec2e08a2cf546b52e8d091bf9bd4eb 310 Gene3D G3DSA:3.40.190.10 101 185 8.7E-13 T 14-09-2016 PAJ_RS14405 5aec2e08a2cf546b52e8d091bf9bd4eb 310 SUPERFAMILY SSF53850 101 305 2.17E-30 T 14-09-2016 PAJ_RS14405 5aec2e08a2cf546b52e8d091bf9bd4eb 310 Gene3D G3DSA:1.10.10.10 12 93 3.0E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14405 5aec2e08a2cf546b52e8d091bf9bd4eb 310 Gene3D G3DSA:3.40.190.10 186 272 2.2E-10 T 14-09-2016 PAJ_RS14405 5aec2e08a2cf546b52e8d091bf9bd4eb 310 SUPERFAMILY SSF46785 10 121 2.22E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14405 5aec2e08a2cf546b52e8d091bf9bd4eb 310 Pfam PF03466 LysR substrate binding domain 99 304 2.0E-28 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS14405 5aec2e08a2cf546b52e8d091bf9bd4eb 310 PANTHER PTHR30419 7 305 3.1E-87 T 14-09-2016 PAJ_RS14405 5aec2e08a2cf546b52e8d091bf9bd4eb 310 PANTHER PTHR30419:SF10 7 305 3.1E-87 T 14-09-2016 PAJ_RS14405 5aec2e08a2cf546b52e8d091bf9bd4eb 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 71 5.6E-15 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS12850 a6a933a6111f1d04430fd7956c1911ae 105 PANTHER PTHR37485:SF1 2 104 1.4E-49 T 14-09-2016 PAJ_RS12850 a6a933a6111f1d04430fd7956c1911ae 105 Pfam PF04977 Septum formation initiator 11 89 6.0E-29 T 14-09-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 PAJ_RS12850 a6a933a6111f1d04430fd7956c1911ae 105 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 36.341 T 14-09-2016 IPR023081 Cell division protein FtsB PAJ_RS12850 a6a933a6111f1d04430fd7956c1911ae 105 PANTHER PTHR37485 2 104 1.4E-49 T 14-09-2016 PAJ_RS12455 b6fff7b0812851457f710dd8bd88ddc2 285 SUPERFAMILY SSF161098 78 264 2.62E-25 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12455 b6fff7b0812851457f710dd8bd88ddc2 285 Gene3D G3DSA:1.10.3720.10 77 280 2.3E-27 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12455 b6fff7b0812851457f710dd8bd88ddc2 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 282 1.8E-31 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12455 b6fff7b0812851457f710dd8bd88ddc2 285 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 25 60 1.8E-6 T 14-09-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PAJ_RS12455 b6fff7b0812851457f710dd8bd88ddc2 285 PANTHER PTHR30465:SF10 1 285 2.4E-101 T 14-09-2016 PAJ_RS12455 b6fff7b0812851457f710dd8bd88ddc2 285 PANTHER PTHR30465 1 285 2.4E-101 T 14-09-2016 PAJ_RS16520 7e25b3ca960e6bc8137b50429f15693e 194 PANTHER PTHR22935 1 184 2.6E-79 T 14-09-2016 PAJ_RS16520 7e25b3ca960e6bc8137b50429f15693e 194 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 6 181 27.24 T 14-09-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 PAJ_RS16520 7e25b3ca960e6bc8137b50429f15693e 194 PIRSF PIRSF026671 2 187 1.2E-52 T 14-09-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 PAJ_RS16520 7e25b3ca960e6bc8137b50429f15693e 194 Gene3D G3DSA:3.30.1380.10 5 172 6.2E-57 T 14-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain PAJ_RS16520 7e25b3ca960e6bc8137b50429f15693e 194 SUPERFAMILY SSF55166 5 170 4.71E-54 T 14-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain PAJ_RS16520 7e25b3ca960e6bc8137b50429f15693e 194 PANTHER PTHR22935:SF81 1 184 2.6E-79 T 14-09-2016 PAJ_RS16520 7e25b3ca960e6bc8137b50429f15693e 194 Pfam PF01427 D-ala-D-ala dipeptidase 4 184 2.5E-60 T 14-09-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 PAJ_RS01680 e2863e7737f962319deacd5404ee5345 204 PANTHER PTHR11403 8 204 2.8E-120 T 14-09-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 PAJ_RS01680 e2863e7737f962319deacd5404ee5345 204 Pfam PF00510 Cytochrome c oxidase subunit III 16 202 4.0E-16 T 14-09-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 PAJ_RS01680 e2863e7737f962319deacd5404ee5345 204 SUPERFAMILY SSF81452 7 202 4.19E-61 T 14-09-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 PAJ_RS01680 e2863e7737f962319deacd5404ee5345 204 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 25 204 4.3E-89 T 14-09-2016 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 PAJ_RS01680 e2863e7737f962319deacd5404ee5345 204 Gene3D G3DSA:1.20.120.80 24 202 2.5E-53 T 14-09-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 PAJ_RS01680 e2863e7737f962319deacd5404ee5345 204 PANTHER PTHR11403:SF2 8 204 2.8E-120 T 14-09-2016 PAJ_RS16195 b4fc5b255ae7b7547a1a106c084d697a 801 Gene3D G3DSA:3.40.50.2000 467 784 2.7E-130 T 14-09-2016 PAJ_RS16195 b4fc5b255ae7b7547a1a106c084d697a 801 PANTHER PTHR11468 7 801 0.0 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS16195 b4fc5b255ae7b7547a1a106c084d697a 801 Pfam PF00343 Carbohydrate phosphorylase 93 798 4.0E-303 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS16195 b4fc5b255ae7b7547a1a106c084d697a 801 PANTHER PTHR11468:SF10 7 801 0.0 T 14-09-2016 PAJ_RS16195 b4fc5b255ae7b7547a1a106c084d697a 801 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 8 798 0.0 T 14-09-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS16195 b4fc5b255ae7b7547a1a106c084d697a 801 PIRSF PIRSF000460 1 801 1.3E-204 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS16195 b4fc5b255ae7b7547a1a106c084d697a 801 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 643 655 - T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS16195 b4fc5b255ae7b7547a1a106c084d697a 801 SUPERFAMILY SSF53756 5 799 2.59E-289 T 14-09-2016 PAJ_RS16195 b4fc5b255ae7b7547a1a106c084d697a 801 Gene3D G3DSA:3.40.50.2000 5 466 3.0E-180 T 14-09-2016 PAJ_RS18310 13bf6deaa1c10ff988dce0ecba190d09 235 Gene3D G3DSA:3.40.630.30 85 225 1.6E-22 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS18310 13bf6deaa1c10ff988dce0ecba190d09 235 TIGRFAM TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase 44 229 4.8E-80 T 14-09-2016 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 KEGG: 00071+2.3.1.21|MetaCyc: PWY-6111|MetaCyc: PWY-7315|UniPathway: UPA00566 PAJ_RS18310 13bf6deaa1c10ff988dce0ecba190d09 235 Pfam PF00583 Acetyltransferase (GNAT) family 145 218 6.3E-11 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS18310 13bf6deaa1c10ff988dce0ecba190d09 235 Hamap MF_02027 dTDP-fucosamine acetyltransferase [wecD]. 43 229 44.447 T 14-09-2016 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 KEGG: 00071+2.3.1.21|MetaCyc: PWY-6111|MetaCyc: PWY-7315|UniPathway: UPA00566 PAJ_RS18310 13bf6deaa1c10ff988dce0ecba190d09 235 SUPERFAMILY SSF55729 42 228 1.39E-25 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS18310 13bf6deaa1c10ff988dce0ecba190d09 235 PANTHER PTHR23091 85 233 1.2E-16 T 14-09-2016 PAJ_RS20625 9be2019da3e9b1bfdbce10618172c4fc 222 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 10 182 5.7E-46 T 14-09-2016 IPR011978 Uncharacterised protein family UPF0149 PAJ_RS20625 9be2019da3e9b1bfdbce10618172c4fc 222 SUPERFAMILY SSF103642 202 221 9.65E-8 T 14-09-2016 PAJ_RS20625 9be2019da3e9b1bfdbce10618172c4fc 222 SUPERFAMILY SSF101327 10 180 1.44E-22 T 14-09-2016 IPR011978 Uncharacterised protein family UPF0149 PAJ_RS20625 9be2019da3e9b1bfdbce10618172c4fc 222 Pfam PF02810 SEC-C motif 204 221 1.9E-10 T 14-09-2016 IPR004027 SEC-C motif PAJ_RS20625 9be2019da3e9b1bfdbce10618172c4fc 222 PANTHER PTHR33747 1 222 5.2E-119 T 14-09-2016 PAJ_RS20625 9be2019da3e9b1bfdbce10618172c4fc 222 PANTHER PTHR33747:SF2 1 222 5.2E-119 T 14-09-2016 PAJ_RS20625 9be2019da3e9b1bfdbce10618172c4fc 222 Pfam PF03695 Uncharacterised protein family (UPF0149) 13 182 5.0E-34 T 14-09-2016 IPR011978 Uncharacterised protein family UPF0149 PAJ_RS20625 9be2019da3e9b1bfdbce10618172c4fc 222 Gene3D G3DSA:3.10.450.50 193 220 1.0E-11 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS13465 1e408e44fd3303dd9411737462c0784e 187 SUPERFAMILY SSF143456 1 187 4.19E-66 T 14-09-2016 PAJ_RS13465 1e408e44fd3303dd9411737462c0784e 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 1.0E-50 T 14-09-2016 IPR003774 Protein of unknown function UPF0301 PAJ_RS13465 1e408e44fd3303dd9411737462c0784e 187 Gene3D G3DSA:3.40.1740.10 2 40 2.9E-36 T 14-09-2016 PAJ_RS13465 1e408e44fd3303dd9411737462c0784e 187 Gene3D G3DSA:3.40.1740.10 131 177 2.9E-36 T 14-09-2016 PAJ_RS13465 1e408e44fd3303dd9411737462c0784e 187 Gene3D G3DSA:3.30.70.1300 41 130 2.3E-28 T 14-09-2016 PAJ_RS13465 1e408e44fd3303dd9411737462c0784e 187 PANTHER PTHR30327 1 187 1.7E-70 T 14-09-2016 PAJ_RS13465 1e408e44fd3303dd9411737462c0784e 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 39.441 T 14-09-2016 IPR003774 Protein of unknown function UPF0301 PAJ_RS13465 1e408e44fd3303dd9411737462c0784e 187 PANTHER PTHR30327:SF1 1 187 1.7E-70 T 14-09-2016 PAJ_RS17820 3d25506ee5440ec9199f64b91a3225ff 459 Gene3D G3DSA:2.40.170.10 80 459 1.3E-89 T 14-09-2016 IPR003192 Porin, LamB type GO:0006810|GO:0016020 PAJ_RS17820 3d25506ee5440ec9199f64b91a3225ff 459 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 108 207 9.0E-41 T 14-09-2016 IPR003192 Porin, LamB type GO:0006810|GO:0016020 PAJ_RS17820 3d25506ee5440ec9199f64b91a3225ff 459 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 359 452 0.006 T 14-09-2016 IPR003192 Porin, LamB type GO:0006810|GO:0016020 PAJ_RS17820 3d25506ee5440ec9199f64b91a3225ff 459 Pfam PF02264 LamB porin 82 459 5.8E-78 T 14-09-2016 IPR003192 Porin, LamB type GO:0006810|GO:0016020 PAJ_RS17820 3d25506ee5440ec9199f64b91a3225ff 459 SUPERFAMILY SSF56935 80 459 1.16E-90 T 14-09-2016 PAJ_RS17820 3d25506ee5440ec9199f64b91a3225ff 459 PANTHER PTHR38762 56 459 1.8E-14 T 14-09-2016 PAJ_RS10560 31487dee80f397e03d6c49f4b084dcf9 151 Pfam PF13673 Acetyltransferase (GNAT) domain 46 148 1.3E-15 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS10560 31487dee80f397e03d6c49f4b084dcf9 151 PANTHER PTHR23091 13 148 1.1E-41 T 14-09-2016 PAJ_RS10560 31487dee80f397e03d6c49f4b084dcf9 151 Gene3D G3DSA:3.40.630.30 4 148 4.4E-44 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS10560 31487dee80f397e03d6c49f4b084dcf9 151 PANTHER PTHR23091:SF275 13 148 1.1E-41 T 14-09-2016 PAJ_RS10560 31487dee80f397e03d6c49f4b084dcf9 151 SUPERFAMILY SSF55729 3 149 1.03E-29 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS20865 069d79bcdcccd5541827955b5d1d24c3 358 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 340 2.2E-39 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS20865 069d79bcdcccd5541827955b5d1d24c3 358 PANTHER PTHR30482:SF4 116 357 2.0E-187 T 14-09-2016 IPR017778 ABC transporter, urea, permease protein, UrtC PAJ_RS20865 069d79bcdcccd5541827955b5d1d24c3 358 PANTHER PTHR30482:SF4 1 94 2.0E-187 T 14-09-2016 IPR017778 ABC transporter, urea, permease protein, UrtC PAJ_RS20865 069d79bcdcccd5541827955b5d1d24c3 358 PANTHER PTHR30482 116 357 2.0E-187 T 14-09-2016 PAJ_RS20865 069d79bcdcccd5541827955b5d1d24c3 358 PANTHER PTHR30482 1 94 2.0E-187 T 14-09-2016 PAJ_RS20865 069d79bcdcccd5541827955b5d1d24c3 358 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 42 351 4.3E-129 T 14-09-2016 IPR017778 ABC transporter, urea, permease protein, UrtC PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Gene3D G3DSA:1.20.120.160 3 127 1.4E-41 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 PANTHER PTHR22617:SF20 1 652 7.1E-296 T 14-09-2016 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 499 8.4E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 440 8.4E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 PRINTS PR00344 Bacterial sensor protein C-terminal signature 465 475 8.4E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 518 8.4E-15 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Pfam PF01584 CheW-like domain 526 652 2.3E-25 T 14-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Gene3D G3DSA:2.40.50.180 545 608 3.5E-14 T 14-09-2016 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 SUPERFAMILY SSF47226 5 126 1.18E-31 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Gene3D G3DSA:2.30.30.40 609 652 8.2E-25 T 14-09-2016 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Gene3D G3DSA:2.30.30.40 521 542 8.2E-25 T 14-09-2016 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Pfam PF01627 Hpt domain 8 104 1.1E-19 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Gene3D G3DSA:1.10.287.560 273 337 8.4E-24 T 14-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Gene3D G3DSA:3.30.70.400 159 223 5.6E-25 T 14-09-2016 IPR015162 CheY binding PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 SUPERFAMILY SSF55052 161 223 1.54E-16 T 14-09-2016 IPR015162 CheY binding PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 SUPERFAMILY SSF47384 274 337 1.69E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 SUPERFAMILY SSF55874 339 519 5.5E-35 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Pfam PF09078 CheY binding 163 222 3.1E-20 T 14-09-2016 IPR015162 CheY binding PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 SMART SM01231 273 336 8.7E-22 T 14-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 273 336 2.8E-18 T 14-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 SMART SM00073 5 102 9.9E-32 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 384 520 2.3E-18 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 SUPERFAMILY SSF50341 520 652 4.97E-30 T 14-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 SMART SM00387 381 521 1.9E-26 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 PANTHER PTHR22617 1 652 7.1E-296 T 14-09-2016 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 SMART SM00260 513 653 2.0E-41 T 14-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PAJ_RS08520 dab12a933ce65512718591e3d369ad0f 666 Gene3D G3DSA:3.30.565.10 338 520 4.4E-33 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS00290 c35d04bab6ffb288130b3d684ee9b982 106 Hamap MF_00910 Cell division protein FtsL [ftsL]. 20 103 17.503 T 14-09-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 PAJ_RS00290 c35d04bab6ffb288130b3d684ee9b982 106 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 21 103 3.5E-29 T 14-09-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 PAJ_RS00290 c35d04bab6ffb288130b3d684ee9b982 106 PANTHER PTHR37479:SF1 1 106 4.2E-42 T 14-09-2016 PAJ_RS00290 c35d04bab6ffb288130b3d684ee9b982 106 Pfam PF04999 Cell division protein FtsL 10 104 2.5E-35 T 14-09-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 PAJ_RS00290 c35d04bab6ffb288130b3d684ee9b982 106 PANTHER PTHR37479 1 106 4.2E-42 T 14-09-2016 PAJ_RS14010 d094d7739b87add7ba274a921dd04b54 327 SUPERFAMILY SSF56349 12 305 3.24E-41 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PAJ_RS14010 d094d7739b87add7ba274a921dd04b54 327 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 16 94 6.1E-6 T 14-09-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 PAJ_RS14010 d094d7739b87add7ba274a921dd04b54 327 PANTHER PTHR30349 7 327 1.3E-31 T 14-09-2016 PAJ_RS14010 d094d7739b87add7ba274a921dd04b54 327 Gene3D G3DSA:1.10.443.10 133 305 3.0E-36 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS14010 d094d7739b87add7ba274a921dd04b54 327 Pfam PF00589 Phage integrase family 140 298 4.9E-28 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS14010 d094d7739b87add7ba274a921dd04b54 327 PANTHER PTHR30349:SF20 7 327 1.3E-31 T 14-09-2016 PAJ_RS14010 d094d7739b87add7ba274a921dd04b54 327 Gene3D G3DSA:1.10.150.130 14 104 8.2E-11 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 1.7E-6 T 14-09-2016 PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 SUPERFAMILY SSF51735 4 243 3.88E-88 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 4.9E-103 T 14-09-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 5.3E-68 T 14-09-2016 PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 3.0E-15 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 3.0E-15 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 3.0E-15 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PANTHER PTHR24322 10 135 4.2E-78 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PANTHER PTHR24322:SF635 151 183 4.2E-78 T 14-09-2016 PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 2.4E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.4E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 2.4E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 2.4E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.4E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 2.4E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 Gene3D G3DSA:3.40.50.720 1 243 2.7E-91 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PANTHER PTHR24322 151 183 4.2E-78 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS04545 129dd29eab39b51683c7a0cf814cf492 244 PANTHER PTHR24322:SF635 10 135 4.2E-78 T 14-09-2016 PAJ_RS12025 6f0b1ab85fadfc5b6fd3093189fe27e8 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 237 3.0E-104 T 14-09-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 PAJ_RS12025 6f0b1ab85fadfc5b6fd3093189fe27e8 243 PANTHER PTHR30456 2 243 3.1E-143 T 14-09-2016 PAJ_RS12025 6f0b1ab85fadfc5b6fd3093189fe27e8 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 132.139 T 14-09-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 PAJ_RS12025 6f0b1ab85fadfc5b6fd3093189fe27e8 243 SUPERFAMILY SSF63892 4 242 4.18E-101 T 14-09-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 PAJ_RS12025 6f0b1ab85fadfc5b6fd3093189fe27e8 243 Gene3D G3DSA:3.20.20.70 3 242 1.5E-110 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS12025 6f0b1ab85fadfc5b6fd3093189fe27e8 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 1.7E-103 T 14-09-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 PAJ_RS12025 6f0b1ab85fadfc5b6fd3093189fe27e8 243 PANTHER PTHR30456:SF0 2 243 3.1E-143 T 14-09-2016 PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Pfam PF12245 Bacterial Ig-like domain (group 3) 3193 3223 0.026 T 14-09-2016 IPR022038 Bacterial Ig-like domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Pfam PF12245 Bacterial Ig-like domain (group 3) 3601 3622 0.0027 T 14-09-2016 IPR022038 Bacterial Ig-like domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Pfam PF12245 Bacterial Ig-like domain (group 3) 2791 2817 0.87 T 14-09-2016 IPR022038 Bacterial Ig-like domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Pfam PF12245 Bacterial Ig-like domain (group 3) 3501 3522 0.033 T 14-09-2016 IPR022038 Bacterial Ig-like domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Pfam PF12245 Bacterial Ig-like domain (group 3) 3297 3317 2.2 T 14-09-2016 IPR022038 Bacterial Ig-like domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Pfam PF12245 Bacterial Ig-like domain (group 3) 3698 3722 0.49 T 14-09-2016 IPR022038 Bacterial Ig-like domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Pfam PF12245 Bacterial Ig-like domain (group 3) 1374 1393 3.4 T 14-09-2016 IPR022038 Bacterial Ig-like domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Pfam PF12245 Bacterial Ig-like domain (group 3) 1675 1692 4.1 T 14-09-2016 IPR022038 Bacterial Ig-like domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 SMART SM00089 305 382 2.7 T 14-09-2016 IPR022409 PKD/Chitinase domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 SMART SM00089 410 487 9.4 T 14-09-2016 IPR022409 PKD/Chitinase domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 SMART SM00089 515 592 16.0 T 14-09-2016 IPR022409 PKD/Chitinase domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 SMART SM00089 1825 1903 0.14 T 14-09-2016 IPR022409 PKD/Chitinase domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 SMART SM00089 1224 1299 4.1 T 14-09-2016 IPR022409 PKD/Chitinase domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 SMART SM00089 200 277 2.7 T 14-09-2016 IPR022409 PKD/Chitinase domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Pfam PF13750 Bacterial Ig-like domain (group 3) 1769 1897 5.2E-4 T 14-09-2016 IPR022038 Bacterial Ig-like domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Pfam PF13750 Bacterial Ig-like domain (group 3) 1169 1294 0.0064 T 14-09-2016 IPR022038 Bacterial Ig-like domain PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Gene3D G3DSA:2.60.40.1560 3022 3120 3.0E-5 T 14-09-2016 PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Gene3D G3DSA:2.60.40.1560 2431 2506 5.3E-4 T 14-09-2016 PAJ_RS10490 1011987e793358de9c45cd13488c6c88 4385 Gene3D G3DSA:2.60.40.1560 1200 1295 3.4E-5 T 14-09-2016 PAJ_RS09475 106cd2c340f14444207f697865947173 308 SUPERFAMILY SSF52283 35 122 7.37E-8 T 14-09-2016 PAJ_RS09475 106cd2c340f14444207f697865947173 308 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 102 273 2.5E-41 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PAJ_RS09475 106cd2c340f14444207f697865947173 308 Gene3D G3DSA:3.40.50.720 50 108 6.9E-5 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09475 106cd2c340f14444207f697865947173 308 PANTHER PTHR10996:SF114 33 306 4.6E-96 T 14-09-2016 PAJ_RS09475 106cd2c340f14444207f697865947173 308 Gene3D G3DSA:3.40.50.720 109 276 5.2E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09475 106cd2c340f14444207f697865947173 308 PANTHER PTHR10996 33 306 4.6E-96 T 14-09-2016 PAJ_RS09475 106cd2c340f14444207f697865947173 308 SUPERFAMILY SSF51735 95 273 1.5E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS11950 84436cf5f4930bebe0581e1854419817 422 SUPERFAMILY SSF63520 204 330 2.22E-14 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS11950 84436cf5f4930bebe0581e1854419817 422 PANTHER PTHR30185 15 142 2.4E-12 T 14-09-2016 PAJ_RS11950 84436cf5f4930bebe0581e1854419817 422 Pfam PF00874 PRD domain 237 325 2.9E-12 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS11950 84436cf5f4930bebe0581e1854419817 422 Gene3D G3DSA:1.10.1790.10 229 329 7.4E-14 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS11950 84436cf5f4930bebe0581e1854419817 422 PANTHER PTHR30185:SF4 15 142 2.4E-12 T 14-09-2016 PAJ_RS11950 84436cf5f4930bebe0581e1854419817 422 PANTHER PTHR30185:SF4 160 421 2.4E-12 T 14-09-2016 PAJ_RS11950 84436cf5f4930bebe0581e1854419817 422 PANTHER PTHR30185 160 421 2.4E-12 T 14-09-2016 PAJ_RS11630 b9c45b87da64c1a75a4ef715f2fb9969 487 Gene3D G3DSA:1.25.40.10 306 459 1.6E-12 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS11630 b9c45b87da64c1a75a4ef715f2fb9969 487 PANTHER PTHR22726 9 351 9.0E-128 T 14-09-2016 PAJ_RS11630 b9c45b87da64c1a75a4ef715f2fb9969 487 Pfam PF14559 Tetratricopeptide repeat 356 418 2.3E-7 T 14-09-2016 PAJ_RS11630 b9c45b87da64c1a75a4ef715f2fb9969 487 PANTHER PTHR22726:SF10 9 351 9.0E-128 T 14-09-2016 PAJ_RS11630 b9c45b87da64c1a75a4ef715f2fb9969 487 Gene3D G3DSA:3.30.2010.10 68 150 5.3E-16 T 14-09-2016 PAJ_RS11630 b9c45b87da64c1a75a4ef715f2fb9969 487 SUPERFAMILY SSF48452 312 456 5.7E-9 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS11630 b9c45b87da64c1a75a4ef715f2fb9969 487 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 7 482 31.386 T 14-09-2016 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 PAJ_RS11630 b9c45b87da64c1a75a4ef715f2fb9969 487 Pfam PF01435 Peptidase family M48 71 259 1.1E-26 T 14-09-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 PAJ_RS07580 ad7d4ac8a32b540b2fe6e6d46606c927 232 SMART SM01007 7 198 2.2E-68 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS07580 ad7d4ac8a32b540b2fe6e6d46606c927 232 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 231 1.5E-121 T 14-09-2016 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 PAJ_RS07580 ad7d4ac8a32b540b2fe6e6d46606c927 232 PANTHER PTHR22789 1 231 7.5E-142 T 14-09-2016 PAJ_RS07580 ad7d4ac8a32b540b2fe6e6d46606c927 232 SUPERFAMILY SSF53639 1 223 1.31E-67 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS07580 ad7d4ac8a32b540b2fe6e6d46606c927 232 PANTHER PTHR22789:SF7 1 231 7.5E-142 T 14-09-2016 PAJ_RS07580 ad7d4ac8a32b540b2fe6e6d46606c927 232 Gene3D G3DSA:3.40.225.10 2 231 2.4E-71 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS07580 ad7d4ac8a32b540b2fe6e6d46606c927 232 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 7 196 4.5E-45 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS07855 91bd9fd4c45feb0ddcd32a2dc1810c6b 151 SUPERFAMILY SSF54427 26 129 2.38E-35 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS07855 91bd9fd4c45feb0ddcd32a2dc1810c6b 151 SUPERFAMILY SSF103642 132 151 6.87E-6 T 14-09-2016 PAJ_RS07855 91bd9fd4c45feb0ddcd32a2dc1810c6b 151 PANTHER PTHR33747 2 151 2.3E-29 T 14-09-2016 PAJ_RS07855 91bd9fd4c45feb0ddcd32a2dc1810c6b 151 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 1 128 26.882 T 14-09-2016 IPR023006 Uncharacterised protein family UPF0225 PAJ_RS07855 91bd9fd4c45feb0ddcd32a2dc1810c6b 151 Gene3D G3DSA:3.10.450.50 2 151 4.4E-52 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS07855 91bd9fd4c45feb0ddcd32a2dc1810c6b 151 Pfam PF02810 SEC-C motif 134 151 7.7E-7 T 14-09-2016 IPR004027 SEC-C motif PAJ_RS14400 467dac9453889a5815da054701618d52 206 Pfam PF00775 Dioxygenase 40 196 1.4E-19 T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PAJ_RS14400 467dac9453889a5815da054701618d52 206 SUPERFAMILY SSF49482 4 206 4.84E-65 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PAJ_RS14400 467dac9453889a5815da054701618d52 206 PANTHER PTHR33711 4 205 1.2E-74 T 14-09-2016 PAJ_RS14400 467dac9453889a5815da054701618d52 206 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 8 206 1.1E-77 T 14-09-2016 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 PAJ_RS14400 467dac9453889a5815da054701618d52 206 Gene3D G3DSA:2.60.130.10 5 205 2.6E-69 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PAJ_RS14400 467dac9453889a5815da054701618d52 206 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 51 79 - T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PAJ_RS14400 467dac9453889a5815da054701618d52 206 PANTHER PTHR33711:SF2 4 205 1.2E-74 T 14-09-2016 PAJ_RS20495 806f0400c0a419e2ebe574eb9f10ea64 396 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 48 105 2.1E-8 T 14-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 PAJ_RS20495 806f0400c0a419e2ebe574eb9f10ea64 396 PANTHER PTHR10907 63 307 4.5E-60 T 14-09-2016 PAJ_RS20495 806f0400c0a419e2ebe574eb9f10ea64 396 SUPERFAMILY SSF81296 48 113 1.7E-8 T 14-09-2016 IPR014756 Immunoglobulin E-set PAJ_RS20495 806f0400c0a419e2ebe574eb9f10ea64 396 PANTHER PTHR10907:SF33 63 307 4.5E-60 T 14-09-2016 PAJ_RS20495 806f0400c0a419e2ebe574eb9f10ea64 396 SUPERFAMILY SSF53474 139 392 1.78E-40 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS20495 806f0400c0a419e2ebe574eb9f10ea64 396 Gene3D G3DSA:2.60.40.10 45 117 5.2E-10 T 14-09-2016 IPR013783 Immunoglobulin-like fold PAJ_RS20495 806f0400c0a419e2ebe574eb9f10ea64 396 Pfam PF00756 Putative esterase 153 382 9.2E-18 T 14-09-2016 IPR000801 Putative esterase PAJ_RS20495 806f0400c0a419e2ebe574eb9f10ea64 396 Gene3D G3DSA:3.40.50.1820 134 393 1.3E-66 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS01020 18aceb6ba7fab642e12712e79acdfe2d 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 215 8.3E-20 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS01020 18aceb6ba7fab642e12712e79acdfe2d 221 PANTHER PTHR30614:SF18 1 221 2.4E-94 T 14-09-2016 PAJ_RS01020 18aceb6ba7fab642e12712e79acdfe2d 221 PANTHER PTHR30614 1 221 2.4E-94 T 14-09-2016 PAJ_RS01020 18aceb6ba7fab642e12712e79acdfe2d 221 Gene3D G3DSA:1.10.3720.10 12 215 1.8E-44 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS01020 18aceb6ba7fab642e12712e79acdfe2d 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 3.0E-27 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS01020 18aceb6ba7fab642e12712e79acdfe2d 221 SUPERFAMILY SSF161098 14 202 1.09E-41 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS14385 f8abb45313075c18af5477e10a8efc9e 458 PANTHER PTHR24064:SF234 7 430 5.1E-134 T 14-09-2016 PAJ_RS14385 f8abb45313075c18af5477e10a8efc9e 458 Gene3D G3DSA:1.20.1250.20 21 202 2.3E-35 T 14-09-2016 PAJ_RS14385 f8abb45313075c18af5477e10a8efc9e 458 PANTHER PTHR24064 7 430 5.1E-134 T 14-09-2016 PAJ_RS14385 f8abb45313075c18af5477e10a8efc9e 458 Gene3D G3DSA:1.20.1250.20 260 436 5.7E-27 T 14-09-2016 PAJ_RS14385 f8abb45313075c18af5477e10a8efc9e 458 Pfam PF07690 Major Facilitator Superfamily 30 398 3.3E-53 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS14385 f8abb45313075c18af5477e10a8efc9e 458 SUPERFAMILY SSF103473 11 436 1.27E-79 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS14385 f8abb45313075c18af5477e10a8efc9e 458 ProSitePatterns PS00216 Sugar transport proteins signature 1. 79 95 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS14385 f8abb45313075c18af5477e10a8efc9e 458 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 134 144 2.2E-27 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 201 213 2.2E-27 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 267 2.2E-27 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 305 322 2.2E-27 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 103 117 2.2E-27 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 21 117 2.2E-23 T 14-09-2016 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 PANTHER PTHR22807:SF38 22 381 5.9E-198 T 14-09-2016 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 200 211 - T 14-09-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 SUPERFAMILY SSF53335 20 322 4.49E-65 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 54 322 1.1E-101 T 14-09-2016 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 PANTHER PTHR22807 22 381 5.9E-198 T 14-09-2016 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 Gene3D G3DSA:3.40.50.150 114 322 1.6E-59 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 Pfam PF01189 16S rRNA methyltransferase RsmB/F 131 321 2.0E-46 T 14-09-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 433 482 3.0E-11 T 14-09-2016 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS08185 022251853643d3a70e8c97d2929ef447 488 Hamap MF_01579 Ribosomal RNA small subunit methyltransferase F [rsmF]. 19 487 59.733 T 14-09-2016 IPR023545 rRNA small subunit methyltransferase F GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PANTHER PTHR22773 1 566 1.0E-239 T 14-09-2016 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 417 439 1.0E-9 T 14-09-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 358 380 1.0E-9 T 14-09-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 58 82 1.0E-9 T 14-09-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 84 104 1.0E-9 T 14-09-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PANTHER PTHR22773:SF50 1 566 1.0E-239 T 14-09-2016 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 608 2.3E-235 T 14-09-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 225 246 9.1E-56 T 14-09-2016 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 247 273 9.1E-56 T 14-09-2016 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 9.1E-56 T 14-09-2016 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 82 107 9.1E-56 T 14-09-2016 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 157 178 9.1E-56 T 14-09-2016 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 418 437 9.1E-56 T 14-09-2016 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 110 130 9.1E-56 T 14-09-2016 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 Pfam PF00361 Proton-conducting membrane transporter 133 425 2.6E-97 T 14-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 PAJ_RS10580 f68826eae4385b6234a39139ae094e42 611 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 121 1.6E-23 T 14-09-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal PAJ_RS18405 8fd366be29b9fa5d8170c6fa20d3e7af 238 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 196 209 2.9E-5 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS18405 8fd366be29b9fa5d8170c6fa20d3e7af 238 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 2.9E-5 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS18405 8fd366be29b9fa5d8170c6fa20d3e7af 238 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 124 137 2.9E-5 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS18405 8fd366be29b9fa5d8170c6fa20d3e7af 238 SUPERFAMILY SSF56784 9 238 1.76E-40 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18405 8fd366be29b9fa5d8170c6fa20d3e7af 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 201 1.5E-10 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS18405 8fd366be29b9fa5d8170c6fa20d3e7af 238 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 207 7.5E-14 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18405 8fd366be29b9fa5d8170c6fa20d3e7af 238 Gene3D G3DSA:3.40.50.1000 9 236 2.1E-32 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS18405 8fd366be29b9fa5d8170c6fa20d3e7af 238 PANTHER PTHR12725 1 238 1.3E-71 T 14-09-2016 PAJ_RS18405 8fd366be29b9fa5d8170c6fa20d3e7af 238 PANTHER PTHR12725:SF65 1 238 1.3E-71 T 14-09-2016 PAJ_RS18405 8fd366be29b9fa5d8170c6fa20d3e7af 238 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 116 207 6.4E-8 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS07450 1d585925f2bd8c1bef41d9fd90f9fad4 327 Gene3D G3DSA:3.30.390.10 1 103 3.4E-43 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS07450 1d585925f2bd8c1bef41d9fd90f9fad4 327 Pfam PF13378 Enolase C-terminal domain-like 133 320 1.0E-24 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS07450 1d585925f2bd8c1bef41d9fd90f9fad4 327 SMART SM00922 130 223 2.4E-20 T 14-09-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PAJ_RS07450 1d585925f2bd8c1bef41d9fd90f9fad4 327 PANTHER PTHR13794:SF60 4 319 1.5E-125 T 14-09-2016 PAJ_RS07450 1d585925f2bd8c1bef41d9fd90f9fad4 327 SUPERFAMILY SSF54826 3 112 3.36E-29 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS07450 1d585925f2bd8c1bef41d9fd90f9fad4 327 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 173 204 - T 14-09-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 PAJ_RS07450 1d585925f2bd8c1bef41d9fd90f9fad4 327 PANTHER PTHR13794 4 319 1.5E-125 T 14-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PAJ_RS07450 1d585925f2bd8c1bef41d9fd90f9fad4 327 Gene3D G3DSA:3.20.20.120 117 319 3.8E-58 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS07450 1d585925f2bd8c1bef41d9fd90f9fad4 327 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 2 112 4.0E-24 T 14-09-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PAJ_RS07450 1d585925f2bd8c1bef41d9fd90f9fad4 327 SUPERFAMILY SSF51604 117 310 1.19E-50 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS12425 bb0eeb52a687a7a6010386d283ea6100 123 Gene3D G3DSA:1.10.10.10 62 123 2.6E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12425 bb0eeb52a687a7a6010386d283ea6100 123 Pfam PF04703 FaeA-like protein 65 117 3.8E-8 T 14-09-2016 IPR006793 FaeA-like protein GO:0006355|GO:0009289 PAJ_RS12425 bb0eeb52a687a7a6010386d283ea6100 123 SUPERFAMILY SSF46785 69 117 2.42E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20730 271c8ac0ee4835051b43add36372c951 146 PANTHER PTHR23091 2 146 6.8E-28 T 14-09-2016 PAJ_RS20730 271c8ac0ee4835051b43add36372c951 146 Gene3D G3DSA:3.40.630.30 4 146 9.1E-30 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS20730 271c8ac0ee4835051b43add36372c951 146 Pfam PF00583 Acetyltransferase (GNAT) family 52 120 7.1E-15 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS20730 271c8ac0ee4835051b43add36372c951 146 SUPERFAMILY SSF55729 4 146 1.03E-28 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS20730 271c8ac0ee4835051b43add36372c951 146 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 14 142 3.0E-38 T 14-09-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 PAJ_RS20730 271c8ac0ee4835051b43add36372c951 146 PANTHER PTHR23091:SF247 2 146 6.8E-28 T 14-09-2016 PAJ_RS05160 7ed63a78f2177c60e5dfc09e1bd1d44e 1271 SUPERFAMILY SSF52467 18 169 3.69E-8 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS05160 7ed63a78f2177c60e5dfc09e1bd1d44e 1271 Gene3D G3DSA:3.40.50.1220 103 145 3.9E-6 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS05160 7ed63a78f2177c60e5dfc09e1bd1d44e 1271 Gene3D G3DSA:3.40.50.1220 19 36 3.9E-6 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS05160 7ed63a78f2177c60e5dfc09e1bd1d44e 1271 Pfam PF13289 SIR2-like domain 123 269 3.1E-17 T 14-09-2016 PAJ_RS08805 1d063357d908e26984a3fff945ec2964 310 PANTHER PTHR30244:SF1 2 310 4.2E-118 T 14-09-2016 PAJ_RS08805 1d063357d908e26984a3fff945ec2964 310 SUPERFAMILY SSF64518 1 310 1.02E-93 T 14-09-2016 PAJ_RS08805 1d063357d908e26984a3fff945ec2964 310 Gene3D G3DSA:1.20.1330.10 54 172 9.4E-54 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08805 1d063357d908e26984a3fff945ec2964 310 Gene3D G3DSA:1.20.1330.10 212 266 9.4E-54 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08805 1d063357d908e26984a3fff945ec2964 310 Pfam PF00700 Bacterial flagellin C-terminal helical region 225 309 3.1E-30 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08805 1d063357d908e26984a3fff945ec2964 310 PANTHER PTHR30244 2 310 4.2E-118 T 14-09-2016 PAJ_RS08805 1d063357d908e26984a3fff945ec2964 310 PRINTS PR00207 Flagellin signature 110 133 7.9E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08805 1d063357d908e26984a3fff945ec2964 310 PRINTS PR00207 Flagellin signature 36 53 7.9E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08805 1d063357d908e26984a3fff945ec2964 310 PRINTS PR00207 Flagellin signature 75 94 7.9E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08805 1d063357d908e26984a3fff945ec2964 310 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 138 3.2E-41 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08810 1d063357d908e26984a3fff945ec2964 310 PANTHER PTHR30244:SF1 2 310 4.2E-118 T 14-09-2016 PAJ_RS08810 1d063357d908e26984a3fff945ec2964 310 SUPERFAMILY SSF64518 1 310 1.02E-93 T 14-09-2016 PAJ_RS08810 1d063357d908e26984a3fff945ec2964 310 Gene3D G3DSA:1.20.1330.10 54 172 9.4E-54 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08810 1d063357d908e26984a3fff945ec2964 310 Gene3D G3DSA:1.20.1330.10 212 266 9.4E-54 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08810 1d063357d908e26984a3fff945ec2964 310 Pfam PF00700 Bacterial flagellin C-terminal helical region 225 309 3.1E-30 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08810 1d063357d908e26984a3fff945ec2964 310 PANTHER PTHR30244 2 310 4.2E-118 T 14-09-2016 PAJ_RS08810 1d063357d908e26984a3fff945ec2964 310 PRINTS PR00207 Flagellin signature 110 133 7.9E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08810 1d063357d908e26984a3fff945ec2964 310 PRINTS PR00207 Flagellin signature 36 53 7.9E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08810 1d063357d908e26984a3fff945ec2964 310 PRINTS PR00207 Flagellin signature 75 94 7.9E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08810 1d063357d908e26984a3fff945ec2964 310 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 138 3.2E-41 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS14500 d81610ae7c3cd2025cee15f38af67452 283 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 281 2.0E-77 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS14500 d81610ae7c3cd2025cee15f38af67452 283 SUPERFAMILY SSF51569 4 282 5.42E-74 T 14-09-2016 PAJ_RS14500 d81610ae7c3cd2025cee15f38af67452 283 PIRSF PIRSF001359 1 283 1.8E-66 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS14500 d81610ae7c3cd2025cee15f38af67452 283 PANTHER PTHR30304 5 283 3.1E-54 T 14-09-2016 PAJ_RS14500 d81610ae7c3cd2025cee15f38af67452 283 Gene3D G3DSA:3.20.20.70 2 282 4.0E-81 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS16110 8ba8666064ea31ba93ffbbb395dfe6a5 188 ProSitePatterns PS00893 Nudix box signature. 80 101 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PAJ_RS16110 8ba8666064ea31ba93ffbbb395dfe6a5 188 Pfam PF00293 NUDIX domain 47 143 4.5E-13 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS16110 8ba8666064ea31ba93ffbbb395dfe6a5 188 PANTHER PTHR11839:SF12 3 180 8.5E-97 T 14-09-2016 PAJ_RS16110 8ba8666064ea31ba93ffbbb395dfe6a5 188 SUPERFAMILY SSF55811 5 180 3.11E-37 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS16110 8ba8666064ea31ba93ffbbb395dfe6a5 188 Gene3D G3DSA:3.90.79.10 10 183 6.3E-43 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS16110 8ba8666064ea31ba93ffbbb395dfe6a5 188 PANTHER PTHR11839 3 180 8.5E-97 T 14-09-2016 PAJ_RS07745 b6eaba3f8276a51849c92ffdc6b4e2a5 179 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 177 4.1E-69 T 14-09-2016 IPR006008 Intracellular septation protein A GO:0016021 PAJ_RS07745 b6eaba3f8276a51849c92ffdc6b4e2a5 179 PANTHER PTHR36917:SF1 1 177 1.4E-77 T 14-09-2016 PAJ_RS07745 b6eaba3f8276a51849c92ffdc6b4e2a5 179 Pfam PF04279 Intracellular septation protein A 1 175 1.8E-67 T 14-09-2016 IPR006008 Intracellular septation protein A GO:0016021 PAJ_RS07745 b6eaba3f8276a51849c92ffdc6b4e2a5 179 PANTHER PTHR36917 1 177 1.4E-77 T 14-09-2016 PAJ_RS07745 b6eaba3f8276a51849c92ffdc6b4e2a5 179 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 18.794 T 14-09-2016 IPR006008 Intracellular septation protein A GO:0016021 PAJ_RS18735 1b5f4af32828420ff90cdcf5c96e6219 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 14-09-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 PAJ_RS18735 1b5f4af32828420ff90cdcf5c96e6219 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 6.0E-33 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS18735 1b5f4af32828420ff90cdcf5c96e6219 90 SUPERFAMILY SSF47729 1 90 6.48E-33 T 14-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PAJ_RS18735 1b5f4af32828420ff90cdcf5c96e6219 90 PANTHER PTHR33175 1 90 1.6E-59 T 14-09-2016 PAJ_RS18735 1b5f4af32828420ff90cdcf5c96e6219 90 SMART SM00411 1 90 1.5E-43 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS18735 1b5f4af32828420ff90cdcf5c96e6219 90 PANTHER PTHR33175:SF4 1 90 1.6E-59 T 14-09-2016 PAJ_RS18735 1b5f4af32828420ff90cdcf5c96e6219 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.0E-19 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS18735 1b5f4af32828420ff90cdcf5c96e6219 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.0E-19 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS18735 1b5f4af32828420ff90cdcf5c96e6219 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.0E-19 T 14-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PAJ_RS18735 1b5f4af32828420ff90cdcf5c96e6219 90 Gene3D G3DSA:4.10.520.10 1 90 2.7E-37 T 14-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PAJ_RS09740 0a71f0465076c76df130135cee0edef9 420 Pfam PF07005 Putative sugar-binding N-terminal domain 3 226 1.9E-72 T 14-09-2016 IPR010737 Putative sugar-binding, N-terminal domain PAJ_RS09740 0a71f0465076c76df130135cee0edef9 420 PANTHER PTHR30304:SF3 128 420 5.1E-105 T 14-09-2016 PAJ_RS09740 0a71f0465076c76df130135cee0edef9 420 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 254 410 1.4E-42 T 14-09-2016 IPR031475 Putative nucleotide-binding C-terminal domain PAJ_RS09740 0a71f0465076c76df130135cee0edef9 420 PANTHER PTHR30304 128 420 5.1E-105 T 14-09-2016 PAJ_RS09740 0a71f0465076c76df130135cee0edef9 420 SUPERFAMILY SSF142764 3 415 2.48E-133 T 14-09-2016 PAJ_RS19080 56da264799ad0a1beaeee73a320c08eb 181 Pfam PF07437 YfaZ precursor 5 181 1.3E-45 T 14-09-2016 IPR009998 YfaZ PAJ_RS19080 56da264799ad0a1beaeee73a320c08eb 181 Gene3D G3DSA:2.40.160.10 55 169 1.1E-4 T 14-09-2016 IPR023614 Porin domain PAJ_RS19080 56da264799ad0a1beaeee73a320c08eb 181 SUPERFAMILY SSF56925 46 181 1.26E-8 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS08785 0594f7620ed01d29f0bb1b1c30cdaeda 381 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 21 371 1.6E-99 T 14-09-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PAJ_RS08785 0594f7620ed01d29f0bb1b1c30cdaeda 381 SUPERFAMILY SSF53383 12 374 5.35E-103 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS08785 0594f7620ed01d29f0bb1b1c30cdaeda 381 Gene3D G3DSA:3.40.640.10 21 247 4.5E-72 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS08785 0594f7620ed01d29f0bb1b1c30cdaeda 381 Gene3D G3DSA:3.90.1150.10 248 375 9.4E-23 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS08785 0594f7620ed01d29f0bb1b1c30cdaeda 381 PANTHER PTHR30244:SF9 4 378 7.3E-163 T 14-09-2016 PAJ_RS08785 0594f7620ed01d29f0bb1b1c30cdaeda 381 PANTHER PTHR30244 4 378 7.3E-163 T 14-09-2016 PAJ_RS08785 0594f7620ed01d29f0bb1b1c30cdaeda 381 PIRSF PIRSF000390 6 379 3.6E-106 T 14-09-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PAJ_RS17140 2b74e04385bdba9418f2cf0a377bab16 54 PANTHER PTHR36569 1 54 2.1E-21 T 14-09-2016 PAJ_RS17140 2b74e04385bdba9418f2cf0a377bab16 54 PANTHER PTHR36569:SF1 1 54 2.1E-21 T 14-09-2016 PAJ_RS17140 2b74e04385bdba9418f2cf0a377bab16 54 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 10 30 1.0E-7 T 14-09-2016 IPR019626 Stress-induced protein, KGG, repeat PAJ_RS17140 2b74e04385bdba9418f2cf0a377bab16 54 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 36 53 6.5E-7 T 14-09-2016 IPR019626 Stress-induced protein, KGG, repeat PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 Gene3D G3DSA:3.10.580.10 253 368 7.6E-21 T 14-09-2016 PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 SMART SM00382 31 218 2.5E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 18 367 2.6E-106 T 14-09-2016 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 PANTHER PTHR24220:SF350 3 292 3.8E-155 T 14-09-2016 PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 SMART SM00116 322 368 76.0 T 14-09-2016 IPR000644 CBS domain PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 SMART SM00116 263 311 2.1E-4 T 14-09-2016 IPR000644 CBS domain PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 PANTHER PTHR24220 3 292 3.8E-155 T 14-09-2016 PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 SUPERFAMILY SSF52540 1 244 1.82E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 SUPERFAMILY SSF54631 254 368 1.95E-16 T 14-09-2016 PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 Pfam PF00005 ABC transporter 22 168 7.0E-35 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 Gene3D G3DSA:3.40.50.300 1 238 1.3E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 Pfam PF00571 CBS domain 326 368 0.004 T 14-09-2016 IPR000644 CBS domain PAJ_RS07235 f344feb3aee30061296c1ef9ace31791 378 Pfam PF00571 CBS domain 256 305 2.0E-6 T 14-09-2016 IPR000644 CBS domain PAJ_RS01975 65d62ab5fbfcb6238b0589e6afdf97b6 217 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 43 198 2.1E-24 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain PAJ_RS01975 65d62ab5fbfcb6238b0589e6afdf97b6 217 PANTHER PTHR30383 33 211 2.8E-52 T 14-09-2016 PAJ_RS01975 65d62ab5fbfcb6238b0589e6afdf97b6 217 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 41 51 - T 14-09-2016 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 PAJ_RS01975 65d62ab5fbfcb6238b0589e6afdf97b6 217 Gene3D G3DSA:3.40.50.1110 39 216 2.6E-55 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain PAJ_RS01975 65d62ab5fbfcb6238b0589e6afdf97b6 217 SUPERFAMILY SSF52266 40 214 8.09E-52 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain PAJ_RS01975 65d62ab5fbfcb6238b0589e6afdf97b6 217 PANTHER PTHR30383:SF5 33 211 2.8E-52 T 14-09-2016 PAJ_RS05930 3d3ed426b53749e59680ca02dd4407a5 382 PANTHER PTHR10108:SF795 305 372 1.7E-110 T 14-09-2016 PAJ_RS05930 3d3ed426b53749e59680ca02dd4407a5 382 PANTHER PTHR10108:SF795 45 289 1.7E-110 T 14-09-2016 PAJ_RS05930 3d3ed426b53749e59680ca02dd4407a5 382 SUPERFAMILY SSF53335 118 373 4.1E-78 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS05930 3d3ed426b53749e59680ca02dd4407a5 382 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 1.8E-102 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS05930 3d3ed426b53749e59680ca02dd4407a5 382 PANTHER PTHR10108 305 372 1.7E-110 T 14-09-2016 PAJ_RS05930 3d3ed426b53749e59680ca02dd4407a5 382 PANTHER PTHR10108 45 289 1.7E-110 T 14-09-2016 PAJ_RS05930 3d3ed426b53749e59680ca02dd4407a5 382 PIRSF PIRSF003085 2 381 1.6E-127 T 14-09-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 PAJ_RS05930 3d3ed426b53749e59680ca02dd4407a5 382 Gene3D G3DSA:3.40.50.150 109 371 6.9E-95 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS14340 e3118b1a0af5028c538e211afd23a8a9 232 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 35 144 1.3E-19 T 14-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PAJ_RS14340 e3118b1a0af5028c538e211afd23a8a9 232 SUPERFAMILY SSF49354 24 148 1.15E-23 T 14-09-2016 IPR008962 PapD-like PAJ_RS14340 e3118b1a0af5028c538e211afd23a8a9 232 PANTHER PTHR30251:SF4 1 211 8.7E-58 T 14-09-2016 PAJ_RS14340 e3118b1a0af5028c538e211afd23a8a9 232 PANTHER PTHR30251 1 211 8.7E-58 T 14-09-2016 PAJ_RS14340 e3118b1a0af5028c538e211afd23a8a9 232 Gene3D G3DSA:2.60.40.360 25 147 5.1E-20 T 14-09-2016 IPR008962 PapD-like PAJ_RS00935 620df1e3cccc1e444435338fd1c07120 243 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 12 191 2.7E-36 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS00935 620df1e3cccc1e444435338fd1c07120 243 Gene3D G3DSA:3.40.225.10 6 217 9.2E-48 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS00935 620df1e3cccc1e444435338fd1c07120 243 SUPERFAMILY SSF53639 6 222 2.75E-52 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS00935 620df1e3cccc1e444435338fd1c07120 243 SMART SM01007 11 192 4.7E-43 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS00935 620df1e3cccc1e444435338fd1c07120 243 PANTHER PTHR10672 6 214 1.3E-57 T 14-09-2016 PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 PANTHER PTHR30126 1 309 8.2E-150 T 14-09-2016 PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 PANTHER PTHR30126:SF6 1 309 8.2E-150 T 14-09-2016 PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 5.7E-13 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 Pfam PF03466 LysR substrate binding domain 90 294 3.0E-46 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.4E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.4E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.4E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 Gene3D G3DSA:1.10.10.10 2 81 1.0E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 SUPERFAMILY SSF46785 13 112 1.84E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 Gene3D G3DSA:3.40.190.10 92 179 2.4E-23 T 14-09-2016 PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 SUPERFAMILY SSF53850 88 295 1.8E-46 T 14-09-2016 PAJ_RS09530 a964676901304f824f62ed794154f9a9 319 Gene3D G3DSA:3.40.190.10 180 260 1.1E-23 T 14-09-2016 PAJ_RS06980 88ee598ee007c41a89c739d95e1d9cf0 474 PANTHER PTHR30203:SF8 54 469 1.1E-76 T 14-09-2016 PAJ_RS06980 88ee598ee007c41a89c739d95e1d9cf0 474 PIRSF PIRSF001892 6 474 7.0E-111 T 14-09-2016 IPR028351 Cyclolysin transport protein CyaE GO:0005215 PAJ_RS06980 88ee598ee007c41a89c739d95e1d9cf0 474 PANTHER PTHR30203 54 469 1.1E-76 T 14-09-2016 PAJ_RS06980 88ee598ee007c41a89c739d95e1d9cf0 474 Gene3D G3DSA:1.20.1600.10 56 468 1.7E-68 T 14-09-2016 PAJ_RS06980 88ee598ee007c41a89c739d95e1d9cf0 474 SUPERFAMILY SSF56954 52 470 1.44E-75 T 14-09-2016 PAJ_RS06980 88ee598ee007c41a89c739d95e1d9cf0 474 Pfam PF02321 Outer membrane efflux protein 59 241 7.4E-24 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS06980 88ee598ee007c41a89c739d95e1d9cf0 474 Pfam PF02321 Outer membrane efflux protein 279 464 8.9E-29 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS13295 518b33a628250fd3b671ed95ea27fd54 239 PANTHER PTHR10937:SF9 6 237 2.2E-46 T 14-09-2016 PAJ_RS13295 518b33a628250fd3b671ed95ea27fd54 239 Gene3D G3DSA:3.40.50.10490 60 229 9.9E-30 T 14-09-2016 PAJ_RS13295 518b33a628250fd3b671ed95ea27fd54 239 SUPERFAMILY SSF53697 89 230 2.88E-30 T 14-09-2016 PAJ_RS13295 518b33a628250fd3b671ed95ea27fd54 239 Pfam PF01380 SIS domain 107 211 4.9E-16 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS13295 518b33a628250fd3b671ed95ea27fd54 239 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 67 5.0E-16 T 14-09-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PAJ_RS13295 518b33a628250fd3b671ed95ea27fd54 239 SUPERFAMILY SSF46689 8 72 1.72E-18 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS13295 518b33a628250fd3b671ed95ea27fd54 239 Gene3D G3DSA:1.10.10.10 7 59 1.0E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13295 518b33a628250fd3b671ed95ea27fd54 239 PANTHER PTHR10937 6 237 2.2E-46 T 14-09-2016 PAJ_RS06025 2e7315f7ec37c3b077be017c6d9d9997 77 Pfam PF13269 Protein of unknown function (DUF4060) 3 75 9.0E-38 T 14-09-2016 IPR025135 Protein of unknown function DUF4060 PAJ_RS17115 59d0d9854091a29f574a1be1965f5d66 255 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 41.029 T 14-09-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PAJ_RS17115 59d0d9854091a29f574a1be1965f5d66 255 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 14-09-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PAJ_RS17115 59d0d9854091a29f574a1be1965f5d66 255 Pfam PF00121 Triosephosphate isomerase 5 246 2.7E-94 T 14-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PAJ_RS17115 59d0d9854091a29f574a1be1965f5d66 255 PANTHER PTHR21139 1 255 1.3E-133 T 14-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PAJ_RS17115 59d0d9854091a29f574a1be1965f5d66 255 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 1.1E-97 T 14-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PAJ_RS17115 59d0d9854091a29f574a1be1965f5d66 255 Gene3D G3DSA:3.20.20.70 1 250 4.0E-104 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS17115 59d0d9854091a29f574a1be1965f5d66 255 SUPERFAMILY SSF51351 1 249 1.83E-92 T 14-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 37 61 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 Gene3D G3DSA:3.40.1190.20 1 285 1.5E-62 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 PANTHER PTHR10584 1 285 1.9E-43 T 14-09-2016 PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 Pfam PF00294 pfkB family carbohydrate kinase 23 275 1.0E-35 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 PRINTS PR00990 Ribokinase signature 171 186 2.9E-16 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 PRINTS PR00990 Ribokinase signature 5 26 2.9E-16 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 PRINTS PR00990 Ribokinase signature 103 116 2.9E-16 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 PRINTS PR00990 Ribokinase signature 32 51 2.9E-16 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 PRINTS PR00990 Ribokinase signature 197 208 2.9E-16 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 SUPERFAMILY SSF53613 1 284 1.06E-55 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS20160 775dc2616766b182649678a8e91854fb 293 PANTHER PTHR10584:SF184 1 285 1.9E-43 T 14-09-2016 PAJ_RS15525 a5c2c38e95d89b301dfd3a47c387bdfa 1277 Pfam PF13116 Protein of unknown function 506 788 1.0E-95 T 14-09-2016 IPR025263 Domain of unknown function DUF3971 PAJ_RS15525 a5c2c38e95d89b301dfd3a47c387bdfa 1277 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 2 1273 0.0 T 14-09-2016 IPR011836 Conserved hypothetical protein CHP02099 PAJ_RS15525 a5c2c38e95d89b301dfd3a47c387bdfa 1277 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 1039 1050 - T 14-09-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 PAJ_RS15525 a5c2c38e95d89b301dfd3a47c387bdfa 1277 PANTHER PTHR38690 1 1273 0.0 T 14-09-2016 PAJ_RS15525 a5c2c38e95d89b301dfd3a47c387bdfa 1277 Pfam PF13502 AsmA-like C-terminal region 1021 1262 3.0E-67 T 14-09-2016 IPR032712 AsmA-like, C-terminal PAJ_RS17570 5c1491b1eef2c6764f3d2e3ca976a73f 223 SMART SM00448 1 112 6.0E-37 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS17570 5c1491b1eef2c6764f3d2e3ca976a73f 223 Gene3D G3DSA:1.10.10.10 124 217 3.1E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS17570 5c1491b1eef2c6764f3d2e3ca976a73f 223 PANTHER PTHR26402 1 218 1.4E-125 T 14-09-2016 PAJ_RS17570 5c1491b1eef2c6764f3d2e3ca976a73f 223 SUPERFAMILY SSF52172 1 178 5.42E-37 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS17570 5c1491b1eef2c6764f3d2e3ca976a73f 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 3.9E-22 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS17570 5c1491b1eef2c6764f3d2e3ca976a73f 223 PANTHER PTHR26402:SF279 1 218 1.4E-125 T 14-09-2016 PAJ_RS17570 5c1491b1eef2c6764f3d2e3ca976a73f 223 SMART SM00862 145 216 3.0E-24 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS17570 5c1491b1eef2c6764f3d2e3ca976a73f 223 Gene3D G3DSA:3.40.50.2300 1 122 1.5E-36 T 14-09-2016 PAJ_RS17570 5c1491b1eef2c6764f3d2e3ca976a73f 223 Pfam PF00072 Response regulator receiver domain 3 112 1.5E-23 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS08230 e61a060b3f54e49d5e67f008860c1a2b 137 Gene3D G3DSA:3.40.630.30 4 122 3.3E-24 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS08230 e61a060b3f54e49d5e67f008860c1a2b 137 Pfam PF13673 Acetyltransferase (GNAT) domain 31 123 2.3E-10 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS08230 e61a060b3f54e49d5e67f008860c1a2b 137 SUPERFAMILY SSF55729 7 122 4.12E-19 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS01365 03a0a20bd6aec1f2ac8a23f8e237c53b 142 Pfam PF02566 OsmC-like protein 42 137 4.9E-21 T 14-09-2016 IPR003718 OsmC/Ohr family PAJ_RS01365 03a0a20bd6aec1f2ac8a23f8e237c53b 142 Gene3D G3DSA:3.30.300.20 3 140 2.8E-54 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta PAJ_RS01365 03a0a20bd6aec1f2ac8a23f8e237c53b 142 PANTHER PTHR33797:SF1 1 142 1.5E-65 T 14-09-2016 PAJ_RS01365 03a0a20bd6aec1f2ac8a23f8e237c53b 142 SUPERFAMILY SSF82784 1 140 9.81E-42 T 14-09-2016 IPR003718 OsmC/Ohr family PAJ_RS01365 03a0a20bd6aec1f2ac8a23f8e237c53b 142 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 5 137 2.8E-60 T 14-09-2016 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 PAJ_RS01365 03a0a20bd6aec1f2ac8a23f8e237c53b 142 PANTHER PTHR33797 1 142 1.5E-65 T 14-09-2016 PAJ_RS08670 2048ff76071c43293e66a8ba315eaf5c 202 SUPERFAMILY SSF55811 15 196 4.6E-39 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS08670 2048ff76071c43293e66a8ba315eaf5c 202 Gene3D G3DSA:3.90.79.10 14 193 3.7E-48 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS08670 2048ff76071c43293e66a8ba315eaf5c 202 PANTHER PTHR11839 33 198 8.8E-40 T 14-09-2016 PAJ_RS08670 2048ff76071c43293e66a8ba315eaf5c 202 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 14 193 1.0E-38 T 14-09-2016 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 PAJ_RS08670 2048ff76071c43293e66a8ba315eaf5c 202 Pfam PF00293 NUDIX domain 54 172 3.9E-8 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS05770 bc91c6007ee5ae782660f358a9fab910 65 PANTHER PTHR33343 1 65 4.2E-30 T 14-09-2016 PAJ_RS05770 bc91c6007ee5ae782660f358a9fab910 65 Pfam PF01632 Ribosomal protein L35 2 60 3.1E-24 T 14-09-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS05770 bc91c6007ee5ae782660f358a9fab910 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 4.1E-23 T 14-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 PAJ_RS05770 bc91c6007ee5ae782660f358a9fab910 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 4.1E-23 T 14-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 PAJ_RS05770 bc91c6007ee5ae782660f358a9fab910 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.1E-23 T 14-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 PAJ_RS05770 bc91c6007ee5ae782660f358a9fab910 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.346 T 14-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 PAJ_RS05770 bc91c6007ee5ae782660f358a9fab910 65 SUPERFAMILY SSF143034 2 64 1.44E-23 T 14-09-2016 PAJ_RS05770 bc91c6007ee5ae782660f358a9fab910 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.1E-27 T 14-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 PAJ_RS05770 bc91c6007ee5ae782660f358a9fab910 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 14-09-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS02665 03d8065872c43888b9a26328da04ab91 218 SUPERFAMILY SSF50891 88 214 8.72E-49 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS02665 03d8065872c43888b9a26328da04ab91 218 Gene3D G3DSA:2.40.100.10 88 212 2.6E-54 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS02665 03d8065872c43888b9a26328da04ab91 218 SUPERFAMILY SSF160467 5 92 2.62E-10 T 14-09-2016 PAJ_RS02665 03d8065872c43888b9a26328da04ab91 218 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 211 3.6E-85 T 14-09-2016 IPR010016 KipI family PAJ_RS02665 03d8065872c43888b9a26328da04ab91 218 PANTHER PTHR34698:SF2 2 215 7.5E-89 T 14-09-2016 PAJ_RS02665 03d8065872c43888b9a26328da04ab91 218 PANTHER PTHR34698 2 215 7.5E-89 T 14-09-2016 PAJ_RS02665 03d8065872c43888b9a26328da04ab91 218 Gene3D G3DSA:3.30.1360.40 6 79 7.5E-8 T 14-09-2016 IPR024946 Arginine repressor C-terminal-like domain PAJ_RS02665 03d8065872c43888b9a26328da04ab91 218 SMART SM00796 4 202 1.3E-95 T 14-09-2016 IPR003833 Carboxyltransferase domain, subdomain C and D PAJ_RS02665 03d8065872c43888b9a26328da04ab91 218 Pfam PF02682 Allophanate hydrolase subunit 1 5 202 4.9E-72 T 14-09-2016 IPR003833 Carboxyltransferase domain, subdomain C and D PAJ_RS07175 f984c0328ad6a2a9b42f2646e7937e2f 262 Pfam PF02625 XdhC and CoxI family 14 80 2.1E-16 T 14-09-2016 IPR003777 XdhC- CoxI PAJ_RS07175 f984c0328ad6a2a9b42f2646e7937e2f 262 PANTHER PTHR30388:SF5 3 254 7.7E-87 T 14-09-2016 PAJ_RS07175 f984c0328ad6a2a9b42f2646e7937e2f 262 PANTHER PTHR30388 3 254 7.7E-87 T 14-09-2016 PAJ_RS07175 f984c0328ad6a2a9b42f2646e7937e2f 262 Pfam PF13478 XdhC Rossmann domain 109 249 1.2E-38 T 14-09-2016 IPR027051 XdhC Rossmann domain PAJ_RS07175 f984c0328ad6a2a9b42f2646e7937e2f 262 SUPERFAMILY SSF51735 107 190 8.97E-5 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07175 f984c0328ad6a2a9b42f2646e7937e2f 262 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 21 250 4.0E-88 T 14-09-2016 IPR014308 Xanthine dehydrogenase accessory protein XdhC PAJ_RS02360 21c05cf42b453b32089ff7d3c02a6e26 144 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 82 137 4.0E-9 T 14-09-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB PAJ_RS02360 21c05cf42b453b32089ff7d3c02a6e26 144 Pfam PF11776 Nickel/cobalt transporter regulator 86 136 1.2E-21 T 14-09-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 621 4.5E-24 T 14-09-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 SUPERFAMILY SSF56719 389 622 6.28E-78 T 14-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 3 629 47.173 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 SMART SM00433 35 625 3.0E-207 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 150 165 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 363 388 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 136 150 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 193 214 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 312 327 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 504 520 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 239 262 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 470 482 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 538 560 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 449 470 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 27 40 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 175 192 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 339 362 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR01098 Topoisomerase IV subunit B signature 295 311 6.7E-150 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 SUPERFAMILY SSF55874 6 216 5.88E-67 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 5 626 0.0 T 14-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 ProSitePatterns PS00177 DNA topoisomerase II signature. 417 425 - T 14-09-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 SMART SM00387 28 174 1.1E-18 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 172 1.5E-18 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 SUPERFAMILY SSF54211 218 383 1.04E-45 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PANTHER PTHR10169:SF45 1 630 0.0 T 14-09-2016 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 Gene3D G3DSA:3.30.565.10 16 216 3.6E-76 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR00418 DNA topoisomerase II family signature 110 124 1.0E-58 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR00418 DNA topoisomerase II family signature 67 80 1.0E-58 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR00418 DNA topoisomerase II family signature 267 280 1.0E-58 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR00418 DNA topoisomerase II family signature 480 496 1.0E-58 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR00418 DNA topoisomerase II family signature 32 47 1.0E-58 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR00418 DNA topoisomerase II family signature 518 530 1.0E-58 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR00418 DNA topoisomerase II family signature 561 577 1.0E-58 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR00418 DNA topoisomerase II family signature 415 429 1.0E-58 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PRINTS PR00418 DNA topoisomerase II family signature 498 515 1.0E-58 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 Pfam PF01751 Toprim domain 414 523 1.4E-12 T 14-09-2016 IPR006171 Toprim domain PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 PANTHER PTHR10169 1 630 0.0 T 14-09-2016 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 Gene3D G3DSA:3.30.230.10 217 391 2.1E-47 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 Pfam PF00204 DNA gyrase B 219 385 3.3E-39 T 14-09-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS14525 e07d6e148fb4c169aa3aa1de3a342a95 631 Gene3D G3DSA:3.40.50.670 399 612 1.1E-76 T 14-09-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 PAJ_RS09795 dc08011f0b8c3af9e1e4fac6d9690f0f 356 PANTHER PTHR11751 7 351 5.0E-98 T 14-09-2016 PAJ_RS09795 dc08011f0b8c3af9e1e4fac6d9690f0f 356 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 8 354 56.248 T 14-09-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 PAJ_RS09795 dc08011f0b8c3af9e1e4fac6d9690f0f 356 SUPERFAMILY SSF53383 5 352 1.04E-80 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS09795 dc08011f0b8c3af9e1e4fac6d9690f0f 356 Pfam PF00155 Aminotransferase class I and II 45 350 2.4E-59 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS09795 dc08011f0b8c3af9e1e4fac6d9690f0f 356 Gene3D G3DSA:3.90.1150.10 254 353 6.0E-25 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS09795 dc08011f0b8c3af9e1e4fac6d9690f0f 356 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 210 219 - T 14-09-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 PAJ_RS09795 dc08011f0b8c3af9e1e4fac6d9690f0f 356 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 10 352 5.9E-123 T 14-09-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 PAJ_RS09795 dc08011f0b8c3af9e1e4fac6d9690f0f 356 PANTHER PTHR11751:SF398 7 351 5.0E-98 T 14-09-2016 PAJ_RS09795 dc08011f0b8c3af9e1e4fac6d9690f0f 356 Gene3D G3DSA:3.40.640.10 49 253 3.9E-71 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS10715 90dfcffc6fca6cd158e5eddb3eeb1f3b 174 PANTHER PTHR22769 1 172 2.8E-113 T 14-09-2016 PAJ_RS10715 90dfcffc6fca6cd158e5eddb3eeb1f3b 174 Gene3D G3DSA:3.90.79.10 10 172 3.8E-59 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS10715 90dfcffc6fca6cd158e5eddb3eeb1f3b 174 SUPERFAMILY SSF55811 11 166 1.03E-32 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS10715 90dfcffc6fca6cd158e5eddb3eeb1f3b 174 PIRSF PIRSF017340 2 172 7.8E-65 T 14-09-2016 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 PAJ_RS10715 90dfcffc6fca6cd158e5eddb3eeb1f3b 174 PANTHER PTHR22769:SF25 1 172 2.8E-113 T 14-09-2016 PAJ_RS10715 90dfcffc6fca6cd158e5eddb3eeb1f3b 174 Pfam PF00293 NUDIX domain 37 150 7.5E-18 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS11480 3c6f60e67243421744574d96371fd262 298 Gene3D G3DSA:3.30.420.40 5 139 2.8E-24 T 14-09-2016 PAJ_RS11480 3c6f60e67243421744574d96371fd262 298 Pfam PF00480 ROK family 6 290 8.6E-51 T 14-09-2016 IPR000600 ROK family PAJ_RS11480 3c6f60e67243421744574d96371fd262 298 PANTHER PTHR18964 1 286 1.7E-37 T 14-09-2016 PAJ_RS11480 3c6f60e67243421744574d96371fd262 298 PANTHER PTHR18964:SF123 1 286 1.7E-37 T 14-09-2016 PAJ_RS11480 3c6f60e67243421744574d96371fd262 298 Gene3D G3DSA:3.30.420.40 140 276 3.1E-32 T 14-09-2016 PAJ_RS11480 3c6f60e67243421744574d96371fd262 298 SUPERFAMILY SSF53067 4 295 7.08E-41 T 14-09-2016 PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 177 6.0E-26 T 14-09-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 191 1.6E-98 T 14-09-2016 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 98 7.9E-13 T 14-09-2016 IPR000361 FeS cluster biogenesis PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 Pfam PF01106 NifU-like domain 111 177 6.2E-19 T 14-09-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 SUPERFAMILY SSF89360 1 97 7.85E-21 T 14-09-2016 IPR000361 FeS cluster biogenesis PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 Gene3D G3DSA:2.60.300.12 1 97 2.1E-18 T 14-09-2016 IPR000361 FeS cluster biogenesis PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 PANTHER PTHR10072:SF37 147 188 7.2E-89 T 14-09-2016 PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 SUPERFAMILY SSF117916 95 184 3.71E-24 T 14-09-2016 PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 PANTHER PTHR10072:SF37 1 97 7.2E-89 T 14-09-2016 PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 191 45.952 T 14-09-2016 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 PANTHER PTHR10072 1 97 7.2E-89 T 14-09-2016 PAJ_RS16185 9a1c716b9096512b6d90bb0be3354d85 191 PANTHER PTHR10072 147 188 7.2E-89 T 14-09-2016 PAJ_RS02445 58df393355defb876865403f606b4c93 634 Gene3D G3DSA:3.90.1310.10 131 253 2.6E-38 T 14-09-2016 PAJ_RS02445 58df393355defb876865403f606b4c93 634 Gene3D G3DSA:3.40.710.10 254 613 4.0E-99 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS02445 58df393355defb876865403f606b4c93 634 SUPERFAMILY SSF56519 57 254 1.57E-49 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PAJ_RS02445 58df393355defb876865403f606b4c93 634 SUPERFAMILY SSF56601 255 610 1.18E-91 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS02445 58df393355defb876865403f606b4c93 634 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 610 9.1E-85 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PAJ_RS02445 58df393355defb876865403f606b4c93 634 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 613 4.4E-236 T 14-09-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 PAJ_RS02445 58df393355defb876865403f606b4c93 634 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 240 5.0E-45 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PAJ_RS02445 58df393355defb876865403f606b4c93 634 PANTHER PTHR30627:SF2 6 617 2.6E-270 T 14-09-2016 PAJ_RS02445 58df393355defb876865403f606b4c93 634 PANTHER PTHR30627 6 617 2.6E-270 T 14-09-2016 PAJ_RS09875 59e305d5fc380f0ac87f28ff13cb8557 266 PANTHER PTHR30413 6 266 6.5E-42 T 14-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PAJ_RS09875 59e305d5fc380f0ac87f28ff13cb8557 266 Pfam PF01061 ABC-2 type transporter 19 223 4.5E-12 T 14-09-2016 IPR013525 ABC-2 type transporter GO:0016020 PAJ_RS09875 59e305d5fc380f0ac87f28ff13cb8557 266 PANTHER PTHR30413:SF9 6 266 6.5E-42 T 14-09-2016 PAJ_RS03875 5086347bd77a94dcea5a1ce315f92117 105 PANTHER PTHR31350:SF6 1 90 1.3E-24 T 14-09-2016 PAJ_RS03875 5086347bd77a94dcea5a1ce315f92117 105 SMART SM00992 3 102 3.8E-32 T 14-09-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 PAJ_RS03875 5086347bd77a94dcea5a1ce315f92117 105 Hamap MF_01194 Heat shock protein HspQ [hspQ]. 1 105 35.039 T 14-09-2016 IPR022866 Heat shock protein HspQ PAJ_RS03875 5086347bd77a94dcea5a1ce315f92117 105 SUPERFAMILY SSF141255 4 95 3.01E-28 T 14-09-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 PAJ_RS03875 5086347bd77a94dcea5a1ce315f92117 105 PANTHER PTHR31350 1 90 1.3E-24 T 14-09-2016 PAJ_RS03875 5086347bd77a94dcea5a1ce315f92117 105 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 4 101 6.9E-31 T 14-09-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 PAJ_RS03875 5086347bd77a94dcea5a1ce315f92117 105 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 5 96 2.6E-20 T 14-09-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 PAJ_RS05955 2e127df878374ef1d94867f678bfe393 110 Gene3D G3DSA:3.40.30.10 7 101 3.1E-32 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS05955 2e127df878374ef1d94867f678bfe393 110 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 1.7E-46 T 14-09-2016 IPR004480 Monothiol glutaredoxin-related PAJ_RS05955 2e127df878374ef1d94867f678bfe393 110 Pfam PF00462 Glutaredoxin 16 80 9.3E-19 T 14-09-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 PAJ_RS05955 2e127df878374ef1d94867f678bfe393 110 SUPERFAMILY SSF52833 2 101 3.24E-35 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS05955 2e127df878374ef1d94867f678bfe393 110 PIRSF PIRSF005894 1 107 8.9E-52 T 14-09-2016 IPR014434 Monothiol glutaredoxin PAJ_RS05955 2e127df878374ef1d94867f678bfe393 110 PANTHER PTHR10293 5 110 4.7E-58 T 14-09-2016 IPR004480 Monothiol glutaredoxin-related PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PANTHER PTHR11014 1 185 5.1E-199 T 14-09-2016 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 Pfam PF07687 Peptidase dimerisation domain 208 290 6.1E-7 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 Gene3D G3DSA:3.40.630.10 3 181 1.7E-107 T 14-09-2016 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 Gene3D G3DSA:3.40.630.10 397 480 1.7E-107 T 14-09-2016 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 3.0E-100 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 206 223 3.0E-100 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 450 472 3.0E-100 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 251 270 3.0E-100 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 428 444 3.0E-100 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 3.0E-100 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 3.0E-100 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 363 381 3.0E-100 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 3.0E-100 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 Pfam PF01546 Peptidase family M20/M25/M40 73 479 4.7E-19 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 SUPERFAMILY SSF53187 10 182 1.31E-63 T 14-09-2016 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 SUPERFAMILY SSF53187 397 479 1.31E-63 T 14-09-2016 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PANTHER PTHR11014 204 279 5.1E-199 T 14-09-2016 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PANTHER PTHR11014:SF54 1 185 5.1E-199 T 14-09-2016 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PANTHER PTHR11014:SF54 204 279 5.1E-199 T 14-09-2016 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PIRSF PIRSF016599 1 485 2.3E-205 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PANTHER PTHR11014 330 485 5.1E-199 T 14-09-2016 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 Gene3D G3DSA:3.30.70.360 245 296 6.9E-4 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 480 1.2E-177 T 14-09-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 PAJ_RS01150 c083c54efa381f1d2bff5469572a186b 485 PANTHER PTHR11014:SF54 330 485 5.1E-199 T 14-09-2016 PAJ_RS06880 9b51577a7164286444d2e6b4d07b7580 800 PANTHER PTHR11468:SF10 7 798 0.0 T 14-09-2016 PAJ_RS06880 9b51577a7164286444d2e6b4d07b7580 800 Pfam PF00343 Carbohydrate phosphorylase 92 797 2.7E-298 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS06880 9b51577a7164286444d2e6b4d07b7580 800 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 641 653 - T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS06880 9b51577a7164286444d2e6b4d07b7580 800 PANTHER PTHR11468 7 798 0.0 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS06880 9b51577a7164286444d2e6b4d07b7580 800 Gene3D G3DSA:3.40.50.2000 6 465 2.1E-177 T 14-09-2016 PAJ_RS06880 9b51577a7164286444d2e6b4d07b7580 800 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 797 0.0 T 14-09-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS06880 9b51577a7164286444d2e6b4d07b7580 800 PIRSF PIRSF000460 5 800 5.7E-200 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS06880 9b51577a7164286444d2e6b4d07b7580 800 SUPERFAMILY SSF53756 5 798 1.41E-283 T 14-09-2016 PAJ_RS06880 9b51577a7164286444d2e6b4d07b7580 800 Gene3D G3DSA:3.40.50.2000 466 783 6.0E-127 T 14-09-2016 PAJ_RS04745 71fc1e1ab6d69955fae5f8416a7ac399 853 Pfam PF13954 PapC N-terminal domain 32 172 1.8E-30 T 14-09-2016 IPR025885 PapC, N-terminal domain GO:0005515 PAJ_RS04745 71fc1e1ab6d69955fae5f8416a7ac399 853 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 304 314 - T 14-09-2016 IPR018030 Fimbrial membrane usher, conserved site PAJ_RS04745 71fc1e1ab6d69955fae5f8416a7ac399 853 PANTHER PTHR30451 567 853 0.0 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04745 71fc1e1ab6d69955fae5f8416a7ac399 853 SUPERFAMILY SSF141729 53 163 8.5E-22 T 14-09-2016 PAJ_RS04745 71fc1e1ab6d69955fae5f8416a7ac399 853 PANTHER PTHR30451 3 549 0.0 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS04745 71fc1e1ab6d69955fae5f8416a7ac399 853 Pfam PF13953 PapC C-terminal domain 772 835 6.2E-20 T 14-09-2016 IPR025949 PapC-like, C-terminal domain PAJ_RS04745 71fc1e1ab6d69955fae5f8416a7ac399 853 PANTHER PTHR30451:SF7 567 853 0.0 T 14-09-2016 PAJ_RS04745 71fc1e1ab6d69955fae5f8416a7ac399 853 PANTHER PTHR30451:SF7 3 549 0.0 T 14-09-2016 PAJ_RS04745 71fc1e1ab6d69955fae5f8416a7ac399 853 Pfam PF00577 Outer membrane usher protein 191 763 7.3E-141 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10345 ca9c19953d1a09baa86c3087a992cbaa 334 PANTHER PTHR38772 2 334 1.6E-175 T 14-09-2016 PAJ_RS10345 ca9c19953d1a09baa86c3087a992cbaa 334 Pfam PF04245 37-kD nucleoid-associated bacterial protein 10 324 2.4E-99 T 14-09-2016 IPR007358 Nucleoid-associated protein NdpA GO:0009295 PAJ_RS10345 ca9c19953d1a09baa86c3087a992cbaa 334 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 330 45.773 T 14-09-2016 IPR007358 Nucleoid-associated protein NdpA GO:0009295 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 Gene3D G3DSA:2.40.33.10 73 168 7.3E-34 T 14-09-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 SUPERFAMILY SSF52935 323 469 7.33E-34 T 14-09-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 Gene3D G3DSA:3.40.1380.20 327 468 2.5E-42 T 14-09-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 PANTHER PTHR11817 1 464 1.7E-255 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 9.6E-189 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 8.1E-78 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 8.1E-78 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 8.1E-78 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 8.1E-78 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 8.1E-78 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 8.1E-78 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 8.1E-78 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 340 2.3E-153 T 14-09-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 3.8E-27 T 14-09-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 Gene3D G3DSA:3.20.20.60 169 326 7.1E-116 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 Gene3D G3DSA:3.20.20.60 2 72 7.1E-116 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 SUPERFAMILY SSF51621 167 338 2.41E-100 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 SUPERFAMILY SSF51621 1 75 2.41E-100 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 SUPERFAMILY SSF50800 70 167 1.5E-30 T 14-09-2016 IPR011037 Pyruvate kinase-like, insert domain PAJ_RS05900 c1dc856e38c8c63a2344ecddb27dbf46 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 14-09-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PAJ_RS17105 d3c13dde7b180d1aa8e467e8866c6ac3 144 PANTHER PTHR34980 1 133 2.5E-28 T 14-09-2016 PAJ_RS17105 d3c13dde7b180d1aa8e467e8866c6ac3 144 PANTHER PTHR34980:SF1 1 133 2.5E-28 T 14-09-2016 PAJ_RS17105 d3c13dde7b180d1aa8e467e8866c6ac3 144 Pfam PF05656 Protein of unknown function (DUF805) 7 133 2.5E-18 T 14-09-2016 IPR008523 Protein of unknown function DUF805 GO:0016021 PAJ_RS16530 408621550516cbe311056ef1099d0669 338 Gene3D G3DSA:1.10.3720.10 95 164 4.7E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16530 408621550516cbe311056ef1099d0669 338 Gene3D G3DSA:1.10.3720.10 202 331 4.7E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16530 408621550516cbe311056ef1099d0669 338 SUPERFAMILY SSF161098 199 323 2.35E-19 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16530 408621550516cbe311056ef1099d0669 338 SUPERFAMILY SSF161098 95 161 2.35E-19 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16530 408621550516cbe311056ef1099d0669 338 PANTHER PTHR30465:SF0 193 336 1.3E-121 T 14-09-2016 PAJ_RS16530 408621550516cbe311056ef1099d0669 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 335 1.5E-45 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16530 408621550516cbe311056ef1099d0669 338 PANTHER PTHR30465:SF0 1 170 1.3E-121 T 14-09-2016 PAJ_RS16530 408621550516cbe311056ef1099d0669 338 PANTHER PTHR30465 193 336 1.3E-121 T 14-09-2016 PAJ_RS16530 408621550516cbe311056ef1099d0669 338 PANTHER PTHR30465 1 170 1.3E-121 T 14-09-2016 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 8 403 2.1E-206 T 14-09-2016 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 PANTHER PTHR11986:SF71 1 406 1.6E-224 T 14-09-2016 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 223 260 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 Gene3D G3DSA:3.90.1150.10 307 402 2.0E-35 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 Gene3D G3DSA:3.90.1150.10 12 60 2.0E-35 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 14 401 46.507 T 14-09-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 Pfam PF00202 Aminotransferase class-III 24 399 2.0E-132 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 PANTHER PTHR11986 1 406 1.6E-224 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 17 400 1.4E-153 T 14-09-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 Gene3D G3DSA:3.40.640.10 61 303 3.5E-93 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS16015 354c08a4d97e2e6b05b47462e85a7f26 406 SUPERFAMILY SSF53383 9 402 5.3E-128 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS15945 34c6eddf06f6945cc706c3ce4a560507 183 Pfam PF02525 Flavodoxin-like fold 6 172 8.5E-44 T 14-09-2016 IPR003680 Flavodoxin-like fold PAJ_RS15945 34c6eddf06f6945cc706c3ce4a560507 183 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 1 182 48.522 T 14-09-2016 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 PAJ_RS15945 34c6eddf06f6945cc706c3ce4a560507 183 PANTHER PTHR10204 5 176 9.2E-81 T 14-09-2016 PAJ_RS15945 34c6eddf06f6945cc706c3ce4a560507 183 SUPERFAMILY SSF52218 5 175 9.31E-48 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS15945 34c6eddf06f6945cc706c3ce4a560507 183 PANTHER PTHR10204:SF42 5 176 9.2E-81 T 14-09-2016 PAJ_RS15945 34c6eddf06f6945cc706c3ce4a560507 183 Gene3D G3DSA:3.40.50.360 6 176 1.1E-47 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS01105 85a5e477cd29121978579989bddecd3f 257 Pfam PF13230 Glutamine amidotransferases class-II 1 253 2.9E-113 T 14-09-2016 IPR026869 Putative glutamine amidotransferase type 2 PAJ_RS01105 85a5e477cd29121978579989bddecd3f 257 SUPERFAMILY SSF56235 2 253 3.64E-52 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS01105 85a5e477cd29121978579989bddecd3f 257 PANTHER PTHR11907 1 256 6.8E-127 T 14-09-2016 PAJ_RS01105 85a5e477cd29121978579989bddecd3f 257 Gene3D G3DSA:3.60.20.10 1 248 1.7E-66 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS01105 85a5e477cd29121978579989bddecd3f 257 PANTHER PTHR11907:SF10 1 256 6.8E-127 T 14-09-2016 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PANTHER PTHR30555 1 732 0.0 T 14-09-2016 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 484 510 9.5E-48 T 14-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 272 295 9.5E-48 T 14-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 38 60 9.5E-48 T 14-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 79 104 9.5E-48 T 14-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 64 77 9.5E-48 T 14-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 Gene3D G3DSA:1.10.420.10 585 706 4.3E-41 T 14-09-2016 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 SUPERFAMILY SSF48113 34 434 1.06E-138 T 14-09-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 SUPERFAMILY SSF48113 440 731 8.84E-104 T 14-09-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 29 731 0.0 T 14-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PRINTS PR00458 Haem peroxidase superfamily signature 264 279 9.2E-18 T 14-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PRINTS PR00458 Haem peroxidase superfamily signature 102 116 9.2E-18 T 14-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PRINTS PR00458 Haem peroxidase superfamily signature 162 179 9.2E-18 T 14-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PRINTS PR00458 Haem peroxidase superfamily signature 180 192 9.2E-18 T 14-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PRINTS PR00458 Haem peroxidase superfamily signature 323 338 9.2E-18 T 14-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 PANTHER PTHR30555:SF0 1 732 0.0 T 14-09-2016 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 Hamap MF_01961 Catalase-peroxidase [katG]. 10 732 39.056 T 14-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 Gene3D G3DSA:1.10.520.10 437 584 5.7E-54 T 14-09-2016 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 Gene3D G3DSA:1.10.520.10 710 732 5.7E-54 T 14-09-2016 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 Gene3D G3DSA:1.10.520.10 59 257 1.9E-69 T 14-09-2016 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 Gene3D G3DSA:1.10.420.10 315 412 2.6E-44 T 14-09-2016 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 Gene3D G3DSA:1.10.420.10 258 279 2.6E-44 T 14-09-2016 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 Pfam PF00141 Peroxidase 408 706 5.8E-33 T 14-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PAJ_RS01055 969c5a815839f60d37ad69440283c491 732 Pfam PF00141 Peroxidase 83 401 1.3E-48 T 14-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PAJ_RS14120 fe2c4ec1c71635853786cbd07b4c5c3e 517 Pfam PF07514 Putative helicase 34 235 7.9E-24 T 14-09-2016 IPR011119 Uncharacterised domain, helicase/relaxase, putative PAJ_RS14120 fe2c4ec1c71635853786cbd07b4c5c3e 517 Gene3D G3DSA:2.40.10.200 412 515 9.1E-28 T 14-09-2016 PAJ_RS14120 fe2c4ec1c71635853786cbd07b4c5c3e 517 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 396 506 2.4E-19 T 14-09-2016 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal PAJ_RS14120 fe2c4ec1c71635853786cbd07b4c5c3e 517 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 33 238 4.1E-53 T 14-09-2016 IPR022391 Integrating conjugative element relaxase, PFGI-1 class PAJ_RS14120 fe2c4ec1c71635853786cbd07b4c5c3e 517 SUPERFAMILY SSF46785 393 513 5.44E-32 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00790 3910ec36beaf8b6195e55535d3af9afe 102 SUPERFAMILY SSF46626 9 99 1.13E-22 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS00790 3910ec36beaf8b6195e55535d3af9afe 102 Pfam PF00034 Cytochrome c 28 100 7.0E-9 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS00790 3910ec36beaf8b6195e55535d3af9afe 102 Gene3D G3DSA:1.10.760.10 18 101 4.3E-28 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PAJ_RS00790 3910ec36beaf8b6195e55535d3af9afe 102 PANTHER PTHR33751:SF3 1 102 1.4E-25 T 14-09-2016 PAJ_RS00790 3910ec36beaf8b6195e55535d3af9afe 102 PANTHER PTHR33751 1 102 1.4E-25 T 14-09-2016 PAJ_RS04970 8961952769fed6de42b7cf280abffb48 229 Gene3D G3DSA:3.10.450.50 129 224 4.4E-8 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS04970 8961952769fed6de42b7cf280abffb48 229 SUPERFAMILY SSF54427 128 223 1.5E-10 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS04970 8961952769fed6de42b7cf280abffb48 229 Pfam PF14534 Domain of unknown function (DUF4440) 128 217 5.6E-7 T 14-09-2016 IPR027843 Domain of unknown function DUF4440 PAJ_RS04970 8961952769fed6de42b7cf280abffb48 229 SUPERFAMILY SSF88697 2 90 1.09E-7 T 14-09-2016 IPR015947 PUA-like domain PAJ_RS09080 2531a1b8a6934f63e8803140c3857e9e 390 Pfam PF16966 Porin-like glycoporin RafY 32 390 9.0E-168 T 14-09-2016 IPR016963 Glycoporin RafY PAJ_RS08750 ae45f1ac74c6e760ab9e134da7b00674 321 SUPERFAMILY SSF52922 187 318 7.59E-29 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS08750 ae45f1ac74c6e760ab9e134da7b00674 321 Gene3D G3DSA:3.40.50.920 192 318 2.1E-31 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS08750 ae45f1ac74c6e760ab9e134da7b00674 321 Gene3D G3DSA:3.40.50.970 17 191 6.4E-51 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS08750 ae45f1ac74c6e760ab9e134da7b00674 321 Pfam PF02779 Transketolase, pyrimidine binding domain 18 174 2.8E-30 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS08750 ae45f1ac74c6e760ab9e134da7b00674 321 SUPERFAMILY SSF52518 16 174 2.73E-49 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS08750 ae45f1ac74c6e760ab9e134da7b00674 321 PANTHER PTHR11624:SF2 14 321 5.0E-87 T 14-09-2016 PAJ_RS08750 ae45f1ac74c6e760ab9e134da7b00674 321 Pfam PF02780 Transketolase, C-terminal domain 192 312 5.2E-27 T 14-09-2016 IPR033248 Transketolase, C-terminal domain PAJ_RS08750 ae45f1ac74c6e760ab9e134da7b00674 321 PANTHER PTHR11624 14 321 5.0E-87 T 14-09-2016 IPR033247 Transketolase family PAJ_RS08750 ae45f1ac74c6e760ab9e134da7b00674 321 SMART SM00861 15 179 2.5E-42 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PAJ_RS05165 6c139060edb4c5de454c6d0188bf6382 387 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 14-09-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 PAJ_RS05165 6c139060edb4c5de454c6d0188bf6382 387 PIRSF PIRSF000138 2 380 4.2E-121 T 14-09-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 PAJ_RS05165 6c139060edb4c5de454c6d0188bf6382 387 PANTHER PTHR10578 7 377 1.7E-140 T 14-09-2016 PAJ_RS05165 6c139060edb4c5de454c6d0188bf6382 387 PANTHER PTHR10578:SF65 7 377 1.7E-140 T 14-09-2016 PAJ_RS05165 6c139060edb4c5de454c6d0188bf6382 387 SUPERFAMILY SSF51395 5 373 4.15E-94 T 14-09-2016 PAJ_RS05165 6c139060edb4c5de454c6d0188bf6382 387 Pfam PF01070 FMN-dependent dehydrogenase 13 376 4.3E-125 T 14-09-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 PAJ_RS05165 6c139060edb4c5de454c6d0188bf6382 387 Gene3D G3DSA:3.20.20.70 5 378 3.1E-128 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS17070 90c20f408d3e4bc732e36393c3f5cb30 161 SUPERFAMILY SSF89562 2 158 9.42E-44 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PAJ_RS17070 90c20f408d3e4bc732e36393c3f5cb30 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 7.2E-62 T 14-09-2016 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 PAJ_RS17070 90c20f408d3e4bc732e36393c3f5cb30 161 PANTHER PTHR33254 1 161 9.3E-108 T 14-09-2016 PAJ_RS17070 90c20f408d3e4bc732e36393c3f5cb30 161 Gene3D G3DSA:3.50.30.40 1 156 3.1E-45 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PAJ_RS17070 90c20f408d3e4bc732e36393c3f5cb30 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 46.33 T 14-09-2016 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 PAJ_RS17070 90c20f408d3e4bc732e36393c3f5cb30 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 3.0E-87 T 14-09-2016 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 PAJ_RS17070 90c20f408d3e4bc732e36393c3f5cb30 161 Pfam PF03737 Demethylmenaquinone methyltransferase 5 152 7.3E-36 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PAJ_RS17070 90c20f408d3e4bc732e36393c3f5cb30 161 PANTHER PTHR33254:SF7 1 161 9.3E-108 T 14-09-2016 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 PANTHER PTHR11019 128 318 7.0E-45 T 14-09-2016 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 PANTHER PTHR11019 1 109 7.0E-45 T 14-09-2016 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 Pfam PF12852 Cupin 9 195 1.1E-31 T 14-09-2016 IPR032783 AraC-type transcription regulator, ligand-binding domain PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 Gene3D G3DSA:1.10.10.60 265 312 4.2E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 SUPERFAMILY SSF51182 32 93 2.2E-6 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 264 306 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 SMART SM00342 227 310 6.8E-27 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 SUPERFAMILY SSF46689 263 313 7.17E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 Gene3D G3DSA:2.60.120.280 43 181 2.3E-5 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 SUPERFAMILY SSF46689 210 261 1.67E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 Pfam PF12833 Helix-turn-helix domain 233 311 5.6E-19 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 PANTHER PTHR11019:SF77 128 318 7.0E-45 T 14-09-2016 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 PANTHER PTHR11019:SF77 1 109 7.0E-45 T 14-09-2016 PAJ_RS19120 d637f1f9bf614ba6dbebcdf584f93486 321 Gene3D G3DSA:1.10.10.60 209 264 2.9E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS10255 7e4055178b38fecf95f6359da26a9607 309 SMART SM01130 5 304 1.3E-64 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS10255 7e4055178b38fecf95f6359da26a9607 309 SUPERFAMILY SSF51569 3 304 1.05E-66 T 14-09-2016 PAJ_RS10255 7e4055178b38fecf95f6359da26a9607 309 PANTHER PTHR12128:SF15 1 305 1.6E-91 T 14-09-2016 PAJ_RS10255 7e4055178b38fecf95f6359da26a9607 309 PRINTS PR00146 Dihydrodipicolinate synthase signature 136 153 3.5E-7 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS10255 7e4055178b38fecf95f6359da26a9607 309 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 3.5E-7 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS10255 7e4055178b38fecf95f6359da26a9607 309 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 3.5E-7 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS10255 7e4055178b38fecf95f6359da26a9607 309 PIRSF PIRSF001365 2 309 1.7E-64 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS10255 7e4055178b38fecf95f6359da26a9607 309 Pfam PF00701 Dihydrodipicolinate synthetase family 6 301 6.3E-38 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS10255 7e4055178b38fecf95f6359da26a9607 309 PANTHER PTHR12128 1 305 1.6E-91 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS10255 7e4055178b38fecf95f6359da26a9607 309 Gene3D G3DSA:3.20.20.70 3 305 7.3E-81 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS20895 5b3eac97a80363c4d2aaaffbf413eee5 639 Gene3D G3DSA:1.25.20.10 24 383 1.3E-117 T 14-09-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 PAJ_RS20895 5b3eac97a80363c4d2aaaffbf413eee5 639 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 495 523 - T 14-09-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 PAJ_RS20895 5b3eac97a80363c4d2aaaffbf413eee5 639 Gene3D G3DSA:1.10.530.10 469 633 3.9E-53 T 14-09-2016 PAJ_RS20895 5b3eac97a80363c4d2aaaffbf413eee5 639 Pfam PF14718 Soluble lytic murein transglycosylase L domain 402 466 1.6E-23 T 14-09-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 PAJ_RS20895 5b3eac97a80363c4d2aaaffbf413eee5 639 PANTHER PTHR21666 457 639 4.1E-88 T 14-09-2016 PAJ_RS20895 5b3eac97a80363c4d2aaaffbf413eee5 639 SUPERFAMILY SSF48435 23 471 5.75E-131 T 14-09-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 PAJ_RS20895 5b3eac97a80363c4d2aaaffbf413eee5 639 Pfam PF01464 Transglycosylase SLT domain 478 588 7.3E-33 T 14-09-2016 IPR008258 Transglycosylase SLT domain 1 PAJ_RS20895 5b3eac97a80363c4d2aaaffbf413eee5 639 Gene3D G3DSA:1.10.1240.20 399 466 5.4E-28 T 14-09-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 PAJ_RS20895 5b3eac97a80363c4d2aaaffbf413eee5 639 PANTHER PTHR21666:SF184 457 639 4.1E-88 T 14-09-2016 PAJ_RS20895 5b3eac97a80363c4d2aaaffbf413eee5 639 SUPERFAMILY SSF53955 473 635 3.75E-52 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 PANTHER PTHR10887:SF351 151 322 2.6E-81 T 14-09-2016 PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 10 609 1.1E-189 T 14-09-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 SUPERFAMILY SSF52540 8 363 1.52E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 PANTHER PTHR10887 151 322 2.6E-81 T 14-09-2016 PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 Gene3D G3DSA:3.40.50.300 353 371 4.1E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 Gene3D G3DSA:3.40.50.300 138 321 4.1E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 SUPERFAMILY SSF52540 284 381 9.74E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 SUPERFAMILY SSF52540 437 609 9.74E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 Gene3D G3DSA:3.40.50.300 530 588 3.3E-14 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 Gene3D G3DSA:3.40.50.300 372 450 3.3E-14 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 SMART SM00382 167 328 0.0023 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 Pfam PF13604 AAA domain 158 322 1.3E-31 T 14-09-2016 PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 16 609 53.284 T 14-09-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 PAJ_RS13145 5649fe89249a2c8e5f0daa45b7dd4633 615 Pfam PF13538 UvrD-like helicase C-terminal domain 538 584 6.8E-15 T 14-09-2016 IPR027785 UvrD-like helicase C-terminal domain PAJ_RS12060 2d5d6bc5421ea04edf45abc733b5b247 318 Pfam PF03888 MucB/RseB N-terminal domain 29 210 9.3E-61 T 14-09-2016 IPR033434 MucB/RseB, N-terminal PAJ_RS12060 2d5d6bc5421ea04edf45abc733b5b247 318 Pfam PF17188 MucB/RseB C-terminal domain 220 313 1.3E-27 T 14-09-2016 IPR033436 MucB/RseB, C-terminal PAJ_RS12060 2d5d6bc5421ea04edf45abc733b5b247 318 PANTHER PTHR38782 2 318 3.7E-118 T 14-09-2016 PAJ_RS12060 2d5d6bc5421ea04edf45abc733b5b247 318 PIRSF PIRSF005427 2 318 2.8E-88 T 14-09-2016 IPR005588 MucB/RseB PAJ_RS12060 2d5d6bc5421ea04edf45abc733b5b247 318 Gene3D G3DSA:2.50.20.10 123 187 3.2E-7 T 14-09-2016 PAJ_RS12060 2d5d6bc5421ea04edf45abc733b5b247 318 PANTHER PTHR38782:SF1 2 318 3.7E-118 T 14-09-2016 PAJ_RS19840 013d34ad03d29c12e16aefe3300293d4 141 SUPERFAMILY SSF54637 11 138 8.32E-30 T 14-09-2016 IPR029069 HotDog domain PAJ_RS19840 013d34ad03d29c12e16aefe3300293d4 141 PANTHER PTHR12418:SF34 14 138 5.7E-56 T 14-09-2016 PAJ_RS19840 013d34ad03d29c12e16aefe3300293d4 141 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 22 137 1.3E-41 T 14-09-2016 IPR003736 Phenylacetic acid degradation-related domain PAJ_RS19840 013d34ad03d29c12e16aefe3300293d4 141 Gene3D G3DSA:3.10.129.10 3 140 5.7E-48 T 14-09-2016 IPR029069 HotDog domain PAJ_RS19840 013d34ad03d29c12e16aefe3300293d4 141 PANTHER PTHR12418 14 138 5.7E-56 T 14-09-2016 PAJ_RS19840 013d34ad03d29c12e16aefe3300293d4 141 Pfam PF03061 Thioesterase superfamily 52 129 2.5E-14 T 14-09-2016 IPR006683 Thioesterase domain PAJ_RS20015 3c3bf4d336dddabbf08f28bee00634f5 579 SUPERFAMILY SSF56601 233 569 1.51E-81 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS20015 3c3bf4d336dddabbf08f28bee00634f5 579 SUPERFAMILY SSF56519 60 232 2.62E-36 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PAJ_RS20015 3c3bf4d336dddabbf08f28bee00634f5 579 Pfam PF00905 Penicillin binding protein transpeptidase domain 258 553 2.6E-73 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PAJ_RS20015 3c3bf4d336dddabbf08f28bee00634f5 579 PANTHER PTHR30627 6 567 1.5E-185 T 14-09-2016 PAJ_RS20015 3c3bf4d336dddabbf08f28bee00634f5 579 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 217 8.9E-15 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PAJ_RS20015 3c3bf4d336dddabbf08f28bee00634f5 579 PANTHER PTHR30627:SF1 6 567 1.5E-185 T 14-09-2016 PAJ_RS20015 3c3bf4d336dddabbf08f28bee00634f5 579 Gene3D G3DSA:3.40.710.10 241 560 1.1E-77 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS20015 3c3bf4d336dddabbf08f28bee00634f5 579 Gene3D G3DSA:3.90.1310.10 141 240 4.8E-22 T 14-09-2016 PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 SUPERFAMILY SSF56784 1 268 2.43E-77 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 237 1.1E-31 T 14-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 Gene3D G3DSA:3.40.50.1000 183 269 2.9E-60 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 Gene3D G3DSA:3.40.50.1000 1 76 2.9E-60 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 PANTHER PTHR10000 1 269 1.6E-132 T 14-09-2016 PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 Gene3D G3DSA:3.30.1240.10 87 182 5.7E-38 T 14-09-2016 PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 264 1.3E-70 T 14-09-2016 IPR000150 Cof protein GO:0016787 PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 ProSitePatterns PS01229 Hypothetical cof family signature 2. 218 240 - T 14-09-2016 PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 264 3.2E-69 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 PANTHER PTHR10000:SF29 1 269 1.6E-132 T 14-09-2016 PAJ_RS17945 f02600f0457ca368fefe04e3cea3af04 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 14-09-2016 IPR000150 Cof protein GO:0016787 PAJ_RS09360 04c2f4375bba26e42a1df7a7b9689dfe 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 314 1.0E-42 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS09360 04c2f4375bba26e42a1df7a7b9689dfe 326 PANTHER PTHR32196:SF21 13 322 1.4E-110 T 14-09-2016 PAJ_RS09360 04c2f4375bba26e42a1df7a7b9689dfe 326 PANTHER PTHR32196 13 322 1.4E-110 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 0.0 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 SUPERFAMILY SSF82714 183 266 9.81E-17 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 Gene3D G3DSA:3.30.2090.10 183 264 1.4E-16 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 Gene3D G3DSA:3.30.2090.10 703 784 3.4E-15 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PANTHER PTHR32063:SF34 1 1014 0.0 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 SUPERFAMILY SSF82866 789 1014 6.28E-44 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 Gene3D G3DSA:1.10.3850.10 794 1010 4.2E-53 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 SUPERFAMILY SSF82693 555 650 3.66E-14 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 SUPERFAMILY SSF82693 136 182 3.14E-22 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 SUPERFAMILY SSF82693 268 324 3.14E-22 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 SUPERFAMILY SSF82693 40 135 8.02E-23 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 Hamap MF_01424 Multidrug resistance protein MdtC [mdtC]. 1 1024 26.73 T 14-09-2016 IPR023931 Multidrug resistance protein MdtC PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 Gene3D G3DSA:3.30.70.1430 40 141 3.9E-29 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 SUPERFAMILY SSF82866 290 491 8.11E-48 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.6E-86 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.6E-86 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 1.6E-86 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.6E-86 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PRINTS PR00702 Acriflavin resistance protein family signature 605 619 1.6E-86 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.6E-86 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.6E-86 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.6E-86 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.6E-86 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 PANTHER PTHR32063 1 1014 0.0 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 Gene3D G3DSA:3.30.70.1430 558 643 6.2E-10 T 14-09-2016 PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 SUPERFAMILY SSF82714 703 785 5.1E-15 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS10025 4322721a1a7766febce2cdbfe84fc601 1025 Gene3D G3DSA:1.20.1640.10 285 501 8.3E-59 T 14-09-2016 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 SMART SM00304 216 268 4.7E-9 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 Pfam PF02203 Tar ligand binding domain homologue 1 176 1.8E-31 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 PANTHER PTHR32089 1 519 2.4E-197 T 14-09-2016 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 Gene3D G3DSA:1.20.120.30 35 180 3.6E-27 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 PANTHER PTHR32089:SF48 1 519 2.4E-197 T 14-09-2016 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 Pfam PF00672 HAMP domain 196 264 3.2E-12 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 SMART SM00319 44 182 0.0098 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 Gene3D G3DSA:1.10.287.950 284 488 1.0E-63 T 14-09-2016 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 SMART SM00283 269 516 8.4E-97 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 14-09-2016 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 SUPERFAMILY SSF58104 236 517 7.72E-76 T 14-09-2016 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 7.8E-85 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 7.8E-85 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 7.8E-85 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 7.8E-85 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 7.8E-85 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 7.8E-85 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 7.8E-85 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 515 9.0E-66 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS08510 019c5ad0d43ed36dceae32edea766bc0 520 SUPERFAMILY SSF47170 25 179 6.28E-32 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS17630 a89ca3e5359f36f09052b79362cffd69 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 3.2E-31 T 14-09-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 PAJ_RS17630 a89ca3e5359f36f09052b79362cffd69 79 Gene3D G3DSA:1.20.20.10 2 77 1.2E-30 T 14-09-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 PAJ_RS17630 a89ca3e5359f36f09052b79362cffd69 79 SUPERFAMILY SSF81333 3 77 6.02E-18 T 14-09-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 PAJ_RS17630 a89ca3e5359f36f09052b79362cffd69 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 77 14.248 T 14-09-2016 PAJ_RS17630 a89ca3e5359f36f09052b79362cffd69 79 PRINTS PR00124 ATP synthase C subunit signature 12 31 2.8E-8 T 14-09-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 PAJ_RS17630 a89ca3e5359f36f09052b79362cffd69 79 PRINTS PR00124 ATP synthase C subunit signature 50 75 2.8E-8 T 14-09-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 PAJ_RS17630 a89ca3e5359f36f09052b79362cffd69 79 PRINTS PR00124 ATP synthase C subunit signature 33 48 2.8E-8 T 14-09-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 PAJ_RS17630 a89ca3e5359f36f09052b79362cffd69 79 Pfam PF00137 ATP synthase subunit C 11 69 3.6E-9 T 14-09-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 PAJ_RS17630 a89ca3e5359f36f09052b79362cffd69 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 14-09-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site PAJ_RS11655 045020b6d8f2e95d2a63c9097f1ba47c 346 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 7 335 7.2E-153 T 14-09-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS11655 045020b6d8f2e95d2a63c9097f1ba47c 346 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 344 47.019 T 14-09-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PAJ_RS11655 045020b6d8f2e95d2a63c9097f1ba47c 346 Gene3D G3DSA:3.30.1330.10 22 170 2.1E-62 T 14-09-2016 IPR016188 PurM-like, N-terminal domain PAJ_RS11655 045020b6d8f2e95d2a63c9097f1ba47c 346 Gene3D G3DSA:3.90.650.10 171 343 1.3E-70 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain PAJ_RS11655 045020b6d8f2e95d2a63c9097f1ba47c 346 SUPERFAMILY SSF56042 171 342 1.94E-64 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain PAJ_RS11655 045020b6d8f2e95d2a63c9097f1ba47c 346 Pfam PF02769 AIR synthase related protein, C-terminal domain 176 341 2.0E-39 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain PAJ_RS11655 045020b6d8f2e95d2a63c9097f1ba47c 346 Pfam PF00586 AIR synthase related protein, N-terminal domain 58 164 2.8E-15 T 14-09-2016 IPR016188 PurM-like, N-terminal domain PAJ_RS11655 045020b6d8f2e95d2a63c9097f1ba47c 346 PANTHER PTHR10520 4 333 1.9E-223 T 14-09-2016 PAJ_RS11655 045020b6d8f2e95d2a63c9097f1ba47c 346 SUPERFAMILY SSF55326 7 170 1.94E-52 T 14-09-2016 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 Pfam PF13533 Biotin-lipoyl like 61 100 2.1E-10 T 14-09-2016 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 353 368 3.6E-40 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 24 47 3.6E-40 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 66 86 3.6E-40 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 250 271 3.6E-40 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 368 388 3.6E-40 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 283 307 3.6E-40 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 307 330 3.6E-40 T 14-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 SUPERFAMILY SSF111369 46 113 1.19E-7 T 14-09-2016 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 PANTHER PTHR30386:SF4 13 388 6.0E-128 T 14-09-2016 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 Pfam PF13437 HlyD family secretion protein 237 341 1.1E-15 T 14-09-2016 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 ProSitePatterns PS00543 HlyD family secretion proteins signature. 353 375 - T 14-09-2016 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 Gene3D G3DSA:2.40.50.100 235 269 1.6E-14 T 14-09-2016 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 Gene3D G3DSA:2.40.50.100 59 88 1.6E-14 T 14-09-2016 PAJ_RS10475 8ca1bcac496d2d506592de1a8e6d2561 388 PANTHER PTHR30386 13 388 6.0E-128 T 14-09-2016 PAJ_RS10630 9bcb177b9e098d4361e3def159f76347 147 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 9 126 20.059 T 14-09-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 PAJ_RS10630 9bcb177b9e098d4361e3def159f76347 147 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 28 125 2.1E-31 T 14-09-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 PAJ_RS10630 9bcb177b9e098d4361e3def159f76347 147 PANTHER PTHR11058 2 129 7.6E-70 T 14-09-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 PAJ_RS10630 9bcb177b9e098d4361e3def159f76347 147 PANTHER PTHR11058:SF5 2 129 7.6E-70 T 14-09-2016 PAJ_RS12985 05ee3659e1fbba441d06dfdb7971d44c 262 PANTHER PTHR30522 4 262 7.9E-131 T 14-09-2016 PAJ_RS12985 05ee3659e1fbba441d06dfdb7971d44c 262 TIGRFAM TIGR00444 mazG: MazG family protein 10 257 9.8E-115 T 14-09-2016 IPR011551 NTP pyrophosphohydrolase MazG PAJ_RS12985 05ee3659e1fbba441d06dfdb7971d44c 262 PANTHER PTHR30522:SF0 4 262 7.9E-131 T 14-09-2016 IPR011551 NTP pyrophosphohydrolase MazG PAJ_RS12985 05ee3659e1fbba441d06dfdb7971d44c 262 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 27 100 1.1E-27 T 14-09-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core PAJ_RS12985 05ee3659e1fbba441d06dfdb7971d44c 262 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 168 226 2.3E-8 T 14-09-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core PAJ_RS12985 05ee3659e1fbba441d06dfdb7971d44c 262 SUPERFAMILY SSF101386 2 105 8.67E-26 T 14-09-2016 PAJ_RS12985 05ee3659e1fbba441d06dfdb7971d44c 262 SUPERFAMILY SSF101386 135 237 1.61E-24 T 14-09-2016 PAJ_RS12985 05ee3659e1fbba441d06dfdb7971d44c 262 Gene3D G3DSA:1.10.287.1080 131 221 6.8E-13 T 14-09-2016 PAJ_RS12985 05ee3659e1fbba441d06dfdb7971d44c 262 Gene3D G3DSA:1.10.287.1080 21 73 4.3E-7 T 14-09-2016 PAJ_RS07120 feaa3c892e78d6a6db5e7f4eeed189b0 147 Gene3D G3DSA:3.40.630.30 44 143 7.1E-23 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS07120 feaa3c892e78d6a6db5e7f4eeed189b0 147 SUPERFAMILY SSF55729 12 141 1.35E-21 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS07120 feaa3c892e78d6a6db5e7f4eeed189b0 147 Pfam PF00583 Acetyltransferase (GNAT) family 51 120 9.5E-11 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS04920 3a4e858106a15a83558effe31687a510 313 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 278 1.9E-45 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PAJ_RS04920 3a4e858106a15a83558effe31687a510 313 PANTHER PTHR10996 1 311 1.4E-124 T 14-09-2016 PAJ_RS04920 3a4e858106a15a83558effe31687a510 313 SUPERFAMILY SSF51735 100 279 6.02E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS04920 3a4e858106a15a83558effe31687a510 313 PANTHER PTHR10996:SF114 1 311 1.4E-124 T 14-09-2016 PAJ_RS04920 3a4e858106a15a83558effe31687a510 313 Gene3D G3DSA:3.40.50.720 98 278 1.2E-51 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 Gene3D G3DSA:3.40.50.300 742 1048 3.1E-99 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 PANTHER PTHR22683 1 261 0.0 T 14-09-2016 PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 20 191 9.5E-44 T 14-09-2016 IPR025199 DNA translocase FtsK, 4TM region PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 Pfam PF09397 Ftsk gamma domain 1083 1142 3.0E-27 T 14-09-2016 IPR018541 FtsK gamma domain PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 PANTHER PTHR22683 351 1145 0.0 T 14-09-2016 PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 SMART SM00843 1081 1146 3.3E-40 T 14-09-2016 IPR018541 FtsK gamma domain PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 SUPERFAMILY SSF46785 1081 1145 2.45E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 Pfam PF01580 FtsK/SpoIIIE family 768 981 2.7E-73 T 14-09-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 SUPERFAMILY SSF52540 742 1054 4.65E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 PANTHER PTHR22683:SF41 1 261 0.0 T 14-09-2016 PAJ_RS03575 5884613495edd9fdad83afa4cffe9812 1149 PANTHER PTHR22683:SF41 351 1145 0.0 T 14-09-2016 PAJ_RS07650 dfc81470140a229365104400dba48dcc 348 Pfam PF01343 Peptidase family S49 161 304 2.3E-45 T 14-09-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 PAJ_RS07650 dfc81470140a229365104400dba48dcc 348 SUPERFAMILY SSF52096 239 298 2.31E-29 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07650 dfc81470140a229365104400dba48dcc 348 SUPERFAMILY SSF52096 99 208 2.31E-29 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07650 dfc81470140a229365104400dba48dcc 348 PANTHER PTHR33209:SF2 1 348 3.7E-195 T 14-09-2016 PAJ_RS07650 dfc81470140a229365104400dba48dcc 348 Pfam PF08496 Peptidase family S49 N-terminal 2 157 3.5E-61 T 14-09-2016 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 PAJ_RS07650 dfc81470140a229365104400dba48dcc 348 PANTHER PTHR33209 1 348 3.7E-195 T 14-09-2016 PAJ_RS07650 dfc81470140a229365104400dba48dcc 348 Gene3D G3DSA:3.90.226.10 270 302 1.3E-31 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07650 dfc81470140a229365104400dba48dcc 348 Gene3D G3DSA:3.90.226.10 99 204 1.3E-31 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 Gene3D G3DSA:3.30.70.1430 49 151 5.0E-29 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 Gene3D G3DSA:1.10.3850.10 807 1024 1.5E-53 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 Pfam PF00873 AcrB/AcrD/AcrF family 14 1022 0.0 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 SUPERFAMILY SSF82693 49 138 1.12E-22 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 Hamap MF_01423 Multidrug resistance protein MdtB [mdtB]. 1 1037 33.101 T 14-09-2016 IPR022831 Multidrug resistance protein MdtB PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 SUPERFAMILY SSF82866 801 1025 5.36E-44 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 Gene3D G3DSA:3.30.70.1430 568 655 1.1E-11 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 Gene3D G3DSA:3.30.2090.10 192 275 7.3E-19 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 Gene3D G3DSA:3.30.2090.10 719 800 1.6E-16 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 2.5E-79 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 2.5E-79 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 2.5E-79 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 2.5E-79 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 2.5E-79 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 2.5E-79 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 2.5E-79 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 2.5E-79 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 2.5E-79 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 SUPERFAMILY SSF82693 565 662 1.7E-16 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 SUPERFAMILY SSF82714 192 275 7.59E-17 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PANTHER PTHR32063 9 1038 0.0 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 SUPERFAMILY SSF82693 146 191 1.27E-20 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 SUPERFAMILY SSF82693 277 333 1.27E-20 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 SUPERFAMILY SSF82866 299 498 1.83E-44 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 SUPERFAMILY SSF82714 719 800 7.59E-17 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 PANTHER PTHR32063:SF21 9 1038 0.0 T 14-09-2016 PAJ_RS10020 01a5512627c157a7031fa88b31065aa9 1040 Gene3D G3DSA:1.20.1640.10 294 509 9.6E-55 T 14-09-2016 PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 113 191 1.8E-14 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 Gene3D G3DSA:1.10.150.240 17 96 1.4E-16 T 14-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 PANTHER PTHR12725:SF57 8 225 7.9E-51 T 14-09-2016 PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 197 1.7E-22 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 2.4E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 108 121 2.4E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 186 199 2.4E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 139 155 2.4E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 Gene3D G3DSA:3.40.50.1000 97 225 6.9E-42 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 PANTHER PTHR12725 8 225 7.9E-51 T 14-09-2016 PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 6 222 5.9E-68 T 14-09-2016 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 PAJ_RS20735 4ae4ee532a899b92a57d6bbeb59b94c8 226 SUPERFAMILY SSF56784 5 225 7.09E-48 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS03645 fd17f906da3b5d1fc48cbea9cf3bafe5 751 SUPERFAMILY SSF56281 494 739 1.44E-40 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS03645 fd17f906da3b5d1fc48cbea9cf3bafe5 751 Gene3D G3DSA:3.60.15.10 487 712 9.0E-24 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS03645 fd17f906da3b5d1fc48cbea9cf3bafe5 751 PANTHER PTHR30619:SF2 1 746 5.2E-176 T 14-09-2016 PAJ_RS03645 fd17f906da3b5d1fc48cbea9cf3bafe5 751 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 128 715 2.5E-168 T 14-09-2016 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 PAJ_RS03645 fd17f906da3b5d1fc48cbea9cf3bafe5 751 SMART SM00849 505 678 2.6E-6 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS03645 fd17f906da3b5d1fc48cbea9cf3bafe5 751 PANTHER PTHR30619 1 746 5.2E-176 T 14-09-2016 PAJ_RS03645 fd17f906da3b5d1fc48cbea9cf3bafe5 751 Pfam PF00753 Metallo-beta-lactamase superfamily 503 676 6.6E-15 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS03645 fd17f906da3b5d1fc48cbea9cf3bafe5 751 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 223 406 3.9E-37 T 14-09-2016 IPR004477 ComEC/Rec2-related protein PAJ_RS03645 fd17f906da3b5d1fc48cbea9cf3bafe5 751 Pfam PF03772 Competence protein 202 465 1.1E-51 T 14-09-2016 IPR004477 ComEC/Rec2-related protein PAJ_RS15065 1abf1245587d4636761280ce7833d29e 536 SUPERFAMILY SSF74650 40 413 4.71E-140 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS15065 1abf1245587d4636761280ce7833d29e 536 Gene3D G3DSA:2.70.98.10 39 414 1.6E-152 T 14-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PAJ_RS15065 1abf1245587d4636761280ce7833d29e 536 SUPERFAMILY SSF81296 413 521 7.0E-25 T 14-09-2016 IPR014756 Immunoglobulin E-set PAJ_RS15065 1abf1245587d4636761280ce7833d29e 536 PIRSF PIRSF006281 3 523 5.0E-175 T 14-09-2016 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D UniPathway: UPA00637 PAJ_RS15065 1abf1245587d4636761280ce7833d29e 536 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 40 519 2.1E-177 T 14-09-2016 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 UniPathway: UPA00637 PAJ_RS15065 1abf1245587d4636761280ce7833d29e 536 PANTHER PTHR30504 1 536 3.6E-173 T 14-09-2016 PAJ_RS15065 1abf1245587d4636761280ce7833d29e 536 Gene3D G3DSA:2.60.40.10 415 521 1.2E-28 T 14-09-2016 IPR013783 Immunoglobulin-like fold PAJ_RS06180 ea1c8c3c8c382737c80a266e1cd75546 201 SUPERFAMILY SSF47616 83 199 9.33E-28 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS06180 ea1c8c3c8c382737c80a266e1cd75546 201 Pfam PF00043 Glutathione S-transferase, C-terminal domain 94 189 2.4E-13 T 14-09-2016 IPR004046 Glutathione S-transferase, C-terminal PAJ_RS06180 ea1c8c3c8c382737c80a266e1cd75546 201 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 74 2.9E-11 T 14-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PAJ_RS06180 ea1c8c3c8c382737c80a266e1cd75546 201 PANTHER PTHR11260 1 195 1.2E-99 T 14-09-2016 PAJ_RS06180 ea1c8c3c8c382737c80a266e1cd75546 201 Gene3D G3DSA:1.20.1050.10 90 188 8.2E-39 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS06180 ea1c8c3c8c382737c80a266e1cd75546 201 Gene3D G3DSA:3.40.30.10 1 89 3.4E-26 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS06180 ea1c8c3c8c382737c80a266e1cd75546 201 SUPERFAMILY SSF52833 1 78 1.51E-17 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS06180 ea1c8c3c8c382737c80a266e1cd75546 201 PANTHER PTHR11260:SF154 1 195 1.2E-99 T 14-09-2016 PAJ_RS02755 c3050a116043e8ac845634bb214ab7df 379 PANTHER PTHR30365:SF6 1 379 3.2E-194 T 14-09-2016 PAJ_RS02755 c3050a116043e8ac845634bb214ab7df 379 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 362 1.3E-109 T 14-09-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PAJ_RS02755 c3050a116043e8ac845634bb214ab7df 379 PIRSF PIRSF000267 2 378 2.2E-129 T 14-09-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PAJ_RS02755 c3050a116043e8ac845634bb214ab7df 379 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 379 3.5E-193 T 14-09-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PAJ_RS02755 c3050a116043e8ac845634bb214ab7df 379 PANTHER PTHR30365 1 379 3.2E-194 T 14-09-2016 PAJ_RS04395 3e9e9fc2c2eff005f78b817f4222a51f 81 PANTHER PTHR36572:SF2 1 81 1.4E-37 T 14-09-2016 PAJ_RS04395 3e9e9fc2c2eff005f78b817f4222a51f 81 Pfam PF06183 DinI-like family 14 78 4.0E-29 T 14-09-2016 IPR010391 DNA damage-inducible protein DinI-like PAJ_RS04395 3e9e9fc2c2eff005f78b817f4222a51f 81 PANTHER PTHR36572 1 81 1.4E-37 T 14-09-2016 PAJ_RS04395 3e9e9fc2c2eff005f78b817f4222a51f 81 Gene3D G3DSA:3.30.910.10 1 80 5.8E-33 T 14-09-2016 IPR010391 DNA damage-inducible protein DinI-like PAJ_RS04395 3e9e9fc2c2eff005f78b817f4222a51f 81 SUPERFAMILY SSF54857 1 79 2.35E-26 T 14-09-2016 IPR010391 DNA damage-inducible protein DinI-like PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 Pfam PF13091 PLD-like domain 214 340 2.1E-25 T 14-09-2016 IPR025202 Phospholipase D-like domain PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 Pfam PF13091 PLD-like domain 27 158 5.7E-13 T 14-09-2016 IPR025202 Phospholipase D-like domain PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 SUPERFAMILY SSF56024 188 350 7.85E-38 T 14-09-2016 PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 PANTHER PTHR21248 1 381 3.8E-104 T 14-09-2016 PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 PANTHER PTHR21248:SF5 1 381 3.8E-104 T 14-09-2016 PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 Gene3D G3DSA:3.30.870.10 3 198 3.6E-38 T 14-09-2016 PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 Gene3D G3DSA:3.30.870.10 208 366 6.2E-34 T 14-09-2016 PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 SUPERFAMILY SSF56024 5 168 1.1E-37 T 14-09-2016 PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 SMART SM00155 290 313 67.0 T 14-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 SMART SM00155 108 135 3.5E-6 T 14-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PAJ_RS03025 278bc18e8e24bcd3afdafdfcd018e0bc 414 Hamap MF_01917 Cardiolipin synthase B [clsB]. 2 384 51.717 T 14-09-2016 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 PAJ_RS04335 bd0c438f87f2e861e873035a8e45e4ee 133 Pfam PF13984 MsyB protein 3 124 6.9E-65 T 14-09-2016 IPR025729 MsyB protein PAJ_RS05960 fc8d786d99935275432679af3b794ac4 223 Pfam PF00929 Exonuclease 20 194 6.6E-40 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PAJ_RS05960 fc8d786d99935275432679af3b794ac4 223 SMART SM00479 18 203 7.5E-38 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PAJ_RS05960 fc8d786d99935275432679af3b794ac4 223 TIGRFAM TIGR01298 RNaseT: ribonuclease T 10 208 3.7E-106 T 14-09-2016 IPR005987 Ribonuclease T GO:0004540|GO:0006396 PAJ_RS05960 fc8d786d99935275432679af3b794ac4 223 Gene3D G3DSA:3.30.420.10 10 209 5.1E-58 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS05960 fc8d786d99935275432679af3b794ac4 223 PANTHER PTHR30231 1 214 8.5E-117 T 14-09-2016 PAJ_RS05960 fc8d786d99935275432679af3b794ac4 223 Hamap MF_00157 Ribonuclease T [rnt]. 1 223 115.711 T 14-09-2016 IPR005987 Ribonuclease T GO:0004540|GO:0006396 PAJ_RS05960 fc8d786d99935275432679af3b794ac4 223 PANTHER PTHR30231:SF2 1 214 8.5E-117 T 14-09-2016 PAJ_RS05960 fc8d786d99935275432679af3b794ac4 223 SUPERFAMILY SSF53098 9 207 9.76E-58 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS17700 80673a375a081e4fbaa11f9050a89716 244 PANTHER PTHR10010 1 224 5.9E-93 T 14-09-2016 PAJ_RS17700 80673a375a081e4fbaa11f9050a89716 244 Gene3D G3DSA:1.20.58.220 9 115 8.8E-35 T 14-09-2016 PAJ_RS17700 80673a375a081e4fbaa11f9050a89716 244 PIRSF PIRSF003107 7 226 2.7E-65 T 14-09-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 PAJ_RS17700 80673a375a081e4fbaa11f9050a89716 244 SUPERFAMILY SSF109755 13 229 1.05E-69 T 14-09-2016 PAJ_RS17700 80673a375a081e4fbaa11f9050a89716 244 Pfam PF01895 PhoU domain 128 213 3.0E-17 T 14-09-2016 IPR026022 PhoU domain PAJ_RS17700 80673a375a081e4fbaa11f9050a89716 244 Pfam PF01895 PhoU domain 28 111 5.5E-21 T 14-09-2016 IPR026022 PhoU domain PAJ_RS17700 80673a375a081e4fbaa11f9050a89716 244 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 221 3.6E-72 T 14-09-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 PAJ_RS17700 80673a375a081e4fbaa11f9050a89716 244 PANTHER PTHR10010:SF14 1 224 5.9E-93 T 14-09-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 PAJ_RS17700 80673a375a081e4fbaa11f9050a89716 244 Gene3D G3DSA:1.20.58.220 127 232 5.4E-31 T 14-09-2016 PAJ_RS19010 a772e58cfa4328818c92bfa052b4a29b 172 Pfam PF00857 Isochorismatase family 5 135 1.2E-23 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS19010 a772e58cfa4328818c92bfa052b4a29b 172 Gene3D G3DSA:3.40.50.850 1 166 7.5E-30 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS19010 a772e58cfa4328818c92bfa052b4a29b 172 PANTHER PTHR11080 7 172 2.8E-18 T 14-09-2016 PAJ_RS19010 a772e58cfa4328818c92bfa052b4a29b 172 SUPERFAMILY SSF52499 3 153 1.44E-31 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 SUPERFAMILY SSF51735 1 333 4.33E-92 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 PANTHER PTHR10366:SF77 252 335 3.7E-177 T 14-09-2016 PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 1.4E-27 T 14-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 1.4E-27 T 14-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 1.4E-27 T 14-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 1.4E-27 T 14-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 PANTHER PTHR10366 2 233 3.7E-177 T 14-09-2016 PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 Gene3D G3DSA:3.40.50.720 1 183 1.2E-52 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 PANTHER PTHR10366 252 335 3.7E-177 T 14-09-2016 PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 5.2E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 PANTHER PTHR10366:SF77 2 233 3.7E-177 T 14-09-2016 PAJ_RS07830 f9b101bdfb97a376ae3251600e343043 335 Gene3D G3DSA:3.90.25.10 184 333 9.5E-29 T 14-09-2016 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 488 544 2.3E-8 T 14-09-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PANTHER PTHR30033 1 546 5.4E-99 T 14-09-2016 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 SUPERFAMILY SSF64518 138 544 1.05E-45 T 14-09-2016 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PANTHER PTHR30033:SF1 1 546 5.4E-99 T 14-09-2016 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PRINTS PR01005 Flagellar hook-associated protein signature 11 34 5.9E-81 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PRINTS PR01005 Flagellar hook-associated protein signature 49 71 5.9E-81 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PRINTS PR01005 Flagellar hook-associated protein signature 358 380 5.9E-81 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PRINTS PR01005 Flagellar hook-associated protein signature 465 486 5.9E-81 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PRINTS PR01005 Flagellar hook-associated protein signature 123 143 5.9E-81 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PRINTS PR01005 Flagellar hook-associated protein signature 440 459 5.9E-81 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PRINTS PR01005 Flagellar hook-associated protein signature 214 232 5.9E-81 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PRINTS PR01005 Flagellar hook-associated protein signature 512 536 5.9E-81 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PRINTS PR01005 Flagellar hook-associated protein signature 156 180 5.9E-81 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 PRINTS PR01005 Flagellar hook-associated protein signature 258 280 5.9E-81 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 382 9.2E-72 T 14-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PAJ_RS04495 d7fcfec291d0114cd40c5e2ab37bb082 546 Pfam PF00460 Flagella basal body rod protein 5 34 1.2E-6 T 14-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PAJ_RS09915 914672c5d210f48a1c2b442a27512eef 407 Gene3D G3DSA:3.40.50.2000 196 369 1.1E-23 T 14-09-2016 PAJ_RS09915 914672c5d210f48a1c2b442a27512eef 407 PANTHER PTHR12526 1 39 3.0E-62 T 14-09-2016 PAJ_RS09915 914672c5d210f48a1c2b442a27512eef 407 PANTHER PTHR12526 118 407 3.0E-62 T 14-09-2016 PAJ_RS09915 914672c5d210f48a1c2b442a27512eef 407 PANTHER PTHR12526 71 100 3.0E-62 T 14-09-2016 PAJ_RS09915 914672c5d210f48a1c2b442a27512eef 407 Pfam PF00534 Glycosyl transferases group 1 214 370 1.3E-35 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 PAJ_RS09915 914672c5d210f48a1c2b442a27512eef 407 SUPERFAMILY SSF53756 15 406 2.83E-59 T 14-09-2016 PAJ_RS09915 914672c5d210f48a1c2b442a27512eef 407 PANTHER PTHR12526:SF375 1 39 3.0E-62 T 14-09-2016 PAJ_RS09915 914672c5d210f48a1c2b442a27512eef 407 PANTHER PTHR12526:SF375 118 407 3.0E-62 T 14-09-2016 PAJ_RS09915 914672c5d210f48a1c2b442a27512eef 407 PANTHER PTHR12526:SF375 71 100 3.0E-62 T 14-09-2016 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 Gene3D G3DSA:2.40.160.10 23 371 5.1E-105 T 14-09-2016 IPR023614 Porin domain PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 154 176 1.4E-66 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 100 122 1.4E-66 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 245 262 1.4E-66 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 1.4E-66 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 1.4E-66 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 282 301 1.4E-66 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 SUPERFAMILY SSF56935 23 371 1.28E-80 T 14-09-2016 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PANTHER PTHR34501 3 371 1.8E-205 T 14-09-2016 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PANTHER PTHR34501:SF3 3 371 1.8E-205 T 14-09-2016 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 Pfam PF00267 Gram-negative porin 28 371 1.4E-139 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 1.9E-16 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 100 110 1.9E-16 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 156 167 1.9E-16 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 326 343 1.9E-16 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS03720 1d86b972ddcfd491e9f0cd05afaa8474 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 239 251 1.9E-16 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS06555 de985855cea523829b259bc952965442 340 PANTHER PTHR10443 3 335 6.3E-86 T 14-09-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PAJ_RS06555 de985855cea523829b259bc952965442 340 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 2 335 7.4E-94 T 14-09-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PAJ_RS06555 de985855cea523829b259bc952965442 340 ProSitePatterns PS00869 Renal dipeptidase active site. 121 143 - T 14-09-2016 IPR000180 Membrane dipeptidase, active site GO:0006508|GO:0008235|GO:0008239|GO:0016805 MetaCyc: PWY-7533 PAJ_RS06555 de985855cea523829b259bc952965442 340 SUPERFAMILY SSF51556 1 337 1.53E-85 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS06555 de985855cea523829b259bc952965442 340 Gene3D G3DSA:3.20.20.140 1 336 6.6E-107 T 14-09-2016 PAJ_RS02220 65f43dd0587427a3d1ad7102691cbfa6 339 Gene3D G3DSA:1.10.10.10 5 63 2.3E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02220 65f43dd0587427a3d1ad7102691cbfa6 339 Gene3D G3DSA:3.30.420.40 71 187 2.4E-8 T 14-09-2016 PAJ_RS02220 65f43dd0587427a3d1ad7102691cbfa6 339 SUPERFAMILY SSF53067 74 180 1.57E-7 T 14-09-2016 PAJ_RS02220 65f43dd0587427a3d1ad7102691cbfa6 339 SUPERFAMILY SSF46785 10 60 4.23E-6 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20930 489b65dc3c36496b4a66d4fa20dac30e 232 PIRSF PIRSF004808 2 231 2.4E-63 T 14-09-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PAJ_RS20930 489b65dc3c36496b4a66d4fa20dac30e 232 PANTHER PTHR12029 5 180 1.6E-73 T 14-09-2016 PAJ_RS20930 489b65dc3c36496b4a66d4fa20dac30e 232 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 5 225 3.8E-68 T 14-09-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PAJ_RS20930 489b65dc3c36496b4a66d4fa20dac30e 232 PANTHER PTHR12029:SF54 5 180 1.6E-73 T 14-09-2016 PAJ_RS20930 489b65dc3c36496b4a66d4fa20dac30e 232 SUPERFAMILY SSF75217 5 156 2.81E-31 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases PAJ_RS20930 489b65dc3c36496b4a66d4fa20dac30e 232 Gene3D G3DSA:3.40.1280.10 5 155 2.2E-30 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PAJ_RS20930 489b65dc3c36496b4a66d4fa20dac30e 232 Pfam PF00588 SpoU rRNA Methylase family 5 153 1.2E-33 T 14-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 PAJ_RS15625 1653095d39ffc100cd5f7315ec1c611f 252 Gene3D G3DSA:3.40.50.300 11 248 1.7E-83 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15625 1653095d39ffc100cd5f7315ec1c611f 252 PIRSF PIRSF039085 9 252 5.3E-108 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PAJ_RS15625 1653095d39ffc100cd5f7315ec1c611f 252 SUPERFAMILY SSF52540 12 246 3.51E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15625 1653095d39ffc100cd5f7315ec1c611f 252 PANTHER PTHR24220:SF474 14 251 1.2E-170 T 14-09-2016 PAJ_RS15625 1653095d39ffc100cd5f7315ec1c611f 252 PANTHER PTHR24220 14 251 1.2E-170 T 14-09-2016 PAJ_RS15625 1653095d39ffc100cd5f7315ec1c611f 252 SMART SM00382 37 224 1.0E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS15625 1653095d39ffc100cd5f7315ec1c611f 252 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS15625 1653095d39ffc100cd5f7315ec1c611f 252 Pfam PF00005 ABC transporter 28 176 5.0E-37 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS20170 dd3594af818c366f9d303a55b21c3f08 429 PANTHER PTHR38442 1 421 1.9E-147 T 14-09-2016 PAJ_RS20170 dd3594af818c366f9d303a55b21c3f08 429 Pfam PF04286 Protein of unknown function (DUF445) 44 417 8.5E-102 T 14-09-2016 IPR007383 Protein of unknown function DUF445 PAJ_RS05505 ac9c91be8f0305b23ae6c7a2f2449f0e 280 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 271 2.0E-90 T 14-09-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 PAJ_RS05505 ac9c91be8f0305b23ae6c7a2f2449f0e 280 Pfam PF13847 Methyltransferase domain 109 255 3.2E-23 T 14-09-2016 IPR025714 Methyltransferase domain PAJ_RS05505 ac9c91be8f0305b23ae6c7a2f2449f0e 280 PANTHER PTHR18895 1 274 3.6E-109 T 14-09-2016 PAJ_RS05505 ac9c91be8f0305b23ae6c7a2f2449f0e 280 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 1 275 1.8E-86 T 14-09-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 PAJ_RS05505 ac9c91be8f0305b23ae6c7a2f2449f0e 280 PANTHER PTHR18895:SF64 1 274 3.6E-109 T 14-09-2016 PAJ_RS05505 ac9c91be8f0305b23ae6c7a2f2449f0e 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 180 186 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS05505 ac9c91be8f0305b23ae6c7a2f2449f0e 280 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 3 275 44.539 T 14-09-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 PAJ_RS05505 ac9c91be8f0305b23ae6c7a2f2449f0e 280 Gene3D G3DSA:1.10.8.10 1 84 2.3E-29 T 14-09-2016 PAJ_RS05505 ac9c91be8f0305b23ae6c7a2f2449f0e 280 SUPERFAMILY SSF53335 3 273 2.24E-62 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS05505 ac9c91be8f0305b23ae6c7a2f2449f0e 280 Gene3D G3DSA:3.40.50.150 87 274 8.0E-69 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 12 20 - T 14-09-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 122 133 - T 14-09-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 PANTHER PTHR11587:SF6 6 405 7.1E-274 T 14-09-2016 PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 PANTHER PTHR11587 6 405 7.1E-274 T 14-09-2016 PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 Gene3D G3DSA:3.90.1260.10 180 404 1.5E-89 T 14-09-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 Hamap MF_00005 Argininosuccinate synthase [argG]. 6 403 50.89 T 14-09-2016 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 TIGRFAM TIGR00032 argG: argininosuccinate synthase 8 396 7.5E-137 T 14-09-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 Gene3D G3DSA:3.40.50.620 7 175 1.2E-61 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 SUPERFAMILY SSF69864 177 403 4.45E-87 T 14-09-2016 PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 SUPERFAMILY SSF52402 7 172 3.97E-46 T 14-09-2016 PAJ_RS16990 f9557a0c50113b922d2e7a12405dcebc 405 Pfam PF00764 Arginosuccinate synthase 10 397 3.8E-143 T 14-09-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 63 740 1.0E-188 T 14-09-2016 IPR004811 RelA/SpoT family GO:0015969 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 PANTHER PTHR21262:SF5 55 743 0.0 T 14-09-2016 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 SUPERFAMILY SSF109604 23 207 4.71E-46 T 14-09-2016 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 Pfam PF02824 TGS domain 408 467 3.8E-21 T 14-09-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 Gene3D G3DSA:3.30.70.260 665 740 3.0E-27 T 14-09-2016 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 SUPERFAMILY SSF55021 666 742 4.23E-14 T 14-09-2016 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 Gene3D G3DSA:3.10.20.30 408 469 2.1E-25 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 Gene3D G3DSA:3.30.460.10 194 341 4.4E-49 T 14-09-2016 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 SMART SM00954 251 361 8.5E-64 T 14-09-2016 IPR007685 RelA/SpoT GO:0015969 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 PANTHER PTHR21262 55 743 0.0 T 14-09-2016 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 Pfam PF04607 Region found in RelA / SpoT proteins 251 360 8.9E-36 T 14-09-2016 IPR007685 RelA/SpoT GO:0015969 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 SUPERFAMILY SSF81271 400 467 4.91E-22 T 14-09-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 Pfam PF13328 HD domain 46 191 1.4E-39 T 14-09-2016 IPR003607 HD/PDEase domain PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 SUPERFAMILY SSF81301 196 412 3.92E-62 T 14-09-2016 PAJ_RS12990 62ab05bb8a40fc36ac752c78c2489b14 743 Pfam PF13291 ACT domain 665 741 1.4E-17 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PAJ_RS20390 93a9451333f3e77f09fd77380af62153 429 Gene3D G3DSA:1.20.1250.20 20 208 9.7E-48 T 14-09-2016 PAJ_RS20390 93a9451333f3e77f09fd77380af62153 429 Pfam PF07690 Major Facilitator Superfamily 30 387 6.6E-59 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS20390 93a9451333f3e77f09fd77380af62153 429 PANTHER PTHR11662:SF277 20 428 1.1E-115 T 14-09-2016 PAJ_RS20390 93a9451333f3e77f09fd77380af62153 429 PANTHER PTHR11662 20 428 1.1E-115 T 14-09-2016 PAJ_RS20390 93a9451333f3e77f09fd77380af62153 429 Gene3D G3DSA:1.20.1250.20 224 424 7.0E-33 T 14-09-2016 PAJ_RS20390 93a9451333f3e77f09fd77380af62153 429 SUPERFAMILY SSF103473 19 427 5.1E-86 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20390 93a9451333f3e77f09fd77380af62153 429 PIRSF PIRSF002808 5 428 3.5E-34 T 14-09-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 PANTHER PTHR30146:SF4 9 337 7.0E-140 T 14-09-2016 PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 54 1.5E-18 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 Gene3D G3DSA:3.40.50.2300 181 318 9.3E-56 T 14-09-2016 PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 PANTHER PTHR30146 9 337 7.0E-140 T 14-09-2016 PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 SUPERFAMILY SSF47413 10 67 8.53E-14 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 Pfam PF13377 Periplasmic binding protein-like domain 176 337 1.8E-42 T 14-09-2016 PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 Gene3D G3DSA:1.10.260.40 10 52 2.4E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 Gene3D G3DSA:3.40.50.2300 53 180 4.3E-36 T 14-09-2016 PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 SUPERFAMILY SSF53822 69 338 7.66E-89 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS17050 70dcfea28710e7be14601b3428920839 345 SMART SM00354 9 79 4.0E-24 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS05025 7a0f50341dc64b73796cc81eea55d165 177 PANTHER PTHR23091 2 148 1.4E-25 T 14-09-2016 PAJ_RS05025 7a0f50341dc64b73796cc81eea55d165 177 Gene3D G3DSA:3.40.630.30 2 161 3.0E-37 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05025 7a0f50341dc64b73796cc81eea55d165 177 SUPERFAMILY SSF55729 2 150 8.64E-32 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05025 7a0f50341dc64b73796cc81eea55d165 177 Pfam PF00583 Acetyltransferase (GNAT) family 64 142 1.3E-14 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS09935 56f4d3ec166aa152c78b191db91ecd8c 250 SUPERFAMILY SSF53448 8 232 2.25E-44 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS09935 56f4d3ec166aa152c78b191db91ecd8c 250 Pfam PF00535 Glycosyl transferase family 2 10 158 3.0E-29 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS09935 56f4d3ec166aa152c78b191db91ecd8c 250 PANTHER PTHR22916 10 240 6.8E-32 T 14-09-2016 PAJ_RS09935 56f4d3ec166aa152c78b191db91ecd8c 250 Gene3D G3DSA:3.90.550.10 8 235 1.3E-39 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS00735 4d3060091a593929cc8155b87abeda15 166 Gene3D G3DSA:3.30.910.20 97 166 1.8E-34 T 14-09-2016 PAJ_RS00735 4d3060091a593929cc8155b87abeda15 166 Gene3D G3DSA:3.30.910.20 13 59 1.8E-34 T 14-09-2016 PAJ_RS00735 4d3060091a593929cc8155b87abeda15 166 SUPERFAMILY SSF111384 22 165 5.75E-34 T 14-09-2016 IPR024930 Skp domain PAJ_RS00735 4d3060091a593929cc8155b87abeda15 166 SMART SM00935 12 166 3.5E-49 T 14-09-2016 IPR005632 Chaperone protein Skp GO:0051082 PAJ_RS00735 4d3060091a593929cc8155b87abeda15 166 Pfam PF03938 Outer membrane protein (OmpH-like) 11 164 1.7E-35 T 14-09-2016 IPR005632 Chaperone protein Skp GO:0051082 PAJ_RS00735 4d3060091a593929cc8155b87abeda15 166 PIRSF PIRSF002094 1 166 9.2E-51 T 14-09-2016 IPR005632 Chaperone protein Skp GO:0051082 PAJ_RS00735 4d3060091a593929cc8155b87abeda15 166 PANTHER PTHR35089:SF1 2 165 3.9E-46 T 14-09-2016 PAJ_RS00735 4d3060091a593929cc8155b87abeda15 166 PANTHER PTHR35089 2 165 3.9E-46 T 14-09-2016 PAJ_RS04965 3c3a512ca4f8698b13f9aee2d0b32233 402 PANTHER PTHR31238 246 402 4.8E-86 T 14-09-2016 PAJ_RS04965 3c3a512ca4f8698b13f9aee2d0b32233 402 SMART SM00835 67 214 1.4E-13 T 14-09-2016 IPR006045 Cupin 1 GO:0045735 PAJ_RS04965 3c3a512ca4f8698b13f9aee2d0b32233 402 SMART SM00835 250 391 1.6E-33 T 14-09-2016 IPR006045 Cupin 1 GO:0045735 PAJ_RS04965 3c3a512ca4f8698b13f9aee2d0b32233 402 PANTHER PTHR31238:SF32 246 402 4.8E-86 T 14-09-2016 PAJ_RS04965 3c3a512ca4f8698b13f9aee2d0b32233 402 Pfam PF00190 Cupin 255 387 5.9E-23 T 14-09-2016 IPR006045 Cupin 1 GO:0045735 PAJ_RS04965 3c3a512ca4f8698b13f9aee2d0b32233 402 Pfam PF00190 Cupin 77 208 2.7E-17 T 14-09-2016 IPR006045 Cupin 1 GO:0045735 PAJ_RS04965 3c3a512ca4f8698b13f9aee2d0b32233 402 Gene3D G3DSA:2.60.120.10 240 401 8.0E-65 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS04965 3c3a512ca4f8698b13f9aee2d0b32233 402 SUPERFAMILY SSF51182 47 400 1.36E-92 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS04965 3c3a512ca4f8698b13f9aee2d0b32233 402 Gene3D G3DSA:2.60.120.10 42 209 3.9E-58 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS04965 3c3a512ca4f8698b13f9aee2d0b32233 402 TIGRFAM TIGR03404 bicupin_oxalic: bicupin, oxalate decarboxylase family 39 401 2.5E-164 T 14-09-2016 IPR017774 Bicupin, oxalate decarboxylase/oxidase GO:0033609 KEGG: 00630+4.1.1.2|MetaCyc: PWY-6698 PAJ_RS18480 d01a0b3bbd200dac9dbf310a42bfc883 286 SUPERFAMILY SSF103481 35 131 4.97E-8 T 14-09-2016 PAJ_RS18480 d01a0b3bbd200dac9dbf310a42bfc883 286 PANTHER PTHR22911 1 275 4.6E-84 T 14-09-2016 PAJ_RS18480 d01a0b3bbd200dac9dbf310a42bfc883 286 PANTHER PTHR22911:SF27 1 275 4.6E-84 T 14-09-2016 PAJ_RS18480 d01a0b3bbd200dac9dbf310a42bfc883 286 SUPERFAMILY SSF103481 197 277 2.48E-9 T 14-09-2016 PAJ_RS18480 d01a0b3bbd200dac9dbf310a42bfc883 286 Pfam PF00892 EamA-like transporter family 139 274 1.9E-11 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS18480 d01a0b3bbd200dac9dbf310a42bfc883 286 Pfam PF00892 EamA-like transporter family 1 129 1.0E-9 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS18480 d01a0b3bbd200dac9dbf310a42bfc883 286 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 273 9.4E-84 T 14-09-2016 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 PAJ_RS12385 f7e5d78ea17cfc96d86cc4dcbaa27c57 179 SUPERFAMILY SSF55729 3 155 8.58E-32 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS12385 f7e5d78ea17cfc96d86cc4dcbaa27c57 179 Gene3D G3DSA:3.40.630.30 2 176 5.1E-35 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS12385 f7e5d78ea17cfc96d86cc4dcbaa27c57 179 PANTHER PTHR13256 5 176 7.6E-27 T 14-09-2016 PAJ_RS12385 f7e5d78ea17cfc96d86cc4dcbaa27c57 179 Pfam PF13302 Acetyltransferase (GNAT) domain 8 143 9.1E-19 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS01785 f4ac8d81c7fe9c43389d1c53cbfd823e 287 SUPERFAMILY SSF54637 5 114 3.73E-42 T 14-09-2016 IPR029069 HotDog domain PAJ_RS01785 f4ac8d81c7fe9c43389d1c53cbfd823e 287 PANTHER PTHR11066 1 287 2.3E-115 T 14-09-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 PAJ_RS01785 f4ac8d81c7fe9c43389d1c53cbfd823e 287 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 13 283 5.9E-104 T 14-09-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 PAJ_RS01785 f4ac8d81c7fe9c43389d1c53cbfd823e 287 SUPERFAMILY SSF54637 116 283 3.13E-58 T 14-09-2016 IPR029069 HotDog domain PAJ_RS01785 f4ac8d81c7fe9c43389d1c53cbfd823e 287 Gene3D G3DSA:3.10.129.10 126 284 6.3E-56 T 14-09-2016 IPR029069 HotDog domain PAJ_RS01785 f4ac8d81c7fe9c43389d1c53cbfd823e 287 Pfam PF13622 Thioesterase-like superfamily 32 282 1.9E-59 T 14-09-2016 PAJ_RS01785 f4ac8d81c7fe9c43389d1c53cbfd823e 287 PANTHER PTHR11066:SF34 1 287 2.3E-115 T 14-09-2016 PAJ_RS01785 f4ac8d81c7fe9c43389d1c53cbfd823e 287 Gene3D G3DSA:3.10.129.10 5 116 1.1E-49 T 14-09-2016 IPR029069 HotDog domain PAJ_RS04005 a81ebefce9d1e670e8141186c5ca20c1 337 Gene3D G3DSA:1.10.443.10 164 325 8.0E-26 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS04005 a81ebefce9d1e670e8141186c5ca20c1 337 SUPERFAMILY SSF56349 64 325 5.0E-48 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PAJ_RS04005 a81ebefce9d1e670e8141186c5ca20c1 337 Pfam PF00589 Phage integrase family 165 326 8.8E-8 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS04005 a81ebefce9d1e670e8141186c5ca20c1 337 Gene3D G3DSA:1.10.150.130 72 160 1.7E-13 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal PAJ_RS04005 a81ebefce9d1e670e8141186c5ca20c1 337 PANTHER PTHR30349 83 323 2.4E-12 T 14-09-2016 PAJ_RS15850 c4da9c346984060478da44c0fdc870b9 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 2.1E-63 T 14-09-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 PAJ_RS15850 c4da9c346984060478da44c0fdc870b9 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 5.0E-74 T 14-09-2016 IPR013005 50S ribosomal protein uL4 PAJ_RS15850 c4da9c346984060478da44c0fdc870b9 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 201 33.696 T 14-09-2016 IPR013005 50S ribosomal protein uL4 PAJ_RS15850 c4da9c346984060478da44c0fdc870b9 201 SUPERFAMILY SSF52166 10 200 6.67E-72 T 14-09-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 PAJ_RS15850 c4da9c346984060478da44c0fdc870b9 201 Gene3D G3DSA:3.40.1370.10 54 201 8.4E-59 T 14-09-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 PAJ_RS15850 c4da9c346984060478da44c0fdc870b9 201 PANTHER PTHR10746 11 200 2.8E-92 T 14-09-2016 IPR013005 50S ribosomal protein uL4 PAJ_RS01850 28bbd33e91ef5675e424adce76c6c42b 401 Gene3D G3DSA:2.40.50.100 175 210 2.5E-25 T 14-09-2016 PAJ_RS01850 28bbd33e91ef5675e424adce76c6c42b 401 Gene3D G3DSA:2.40.50.100 67 100 2.5E-25 T 14-09-2016 PAJ_RS01850 28bbd33e91ef5675e424adce76c6c42b 401 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 66 295 2.0E-13 T 14-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PAJ_RS01850 28bbd33e91ef5675e424adce76c6c42b 401 PANTHER PTHR30158:SF4 3 401 7.8E-195 T 14-09-2016 PAJ_RS01850 28bbd33e91ef5675e424adce76c6c42b 401 Pfam PF00529 HlyD membrane-fusion protein of T1SS 41 361 7.5E-14 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS01850 28bbd33e91ef5675e424adce76c6c42b 401 SUPERFAMILY SSF111369 55 302 1.06E-89 T 14-09-2016 PAJ_RS01850 28bbd33e91ef5675e424adce76c6c42b 401 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 377 1.6E-88 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS01850 28bbd33e91ef5675e424adce76c6c42b 401 PANTHER PTHR30158 3 401 7.8E-195 T 14-09-2016 PAJ_RS07130 0a756e068c40871ad28b5aff54c8b309 462 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 15 449 1.7E-129 T 14-09-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 PAJ_RS07130 0a756e068c40871ad28b5aff54c8b309 462 PANTHER PTHR11328 10 456 1.1E-141 T 14-09-2016 PAJ_RS07130 0a756e068c40871ad28b5aff54c8b309 462 SUPERFAMILY SSF103473 18 433 1.23E-36 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS07130 0a756e068c40871ad28b5aff54c8b309 462 Gene3D G3DSA:1.20.1250.20 24 211 1.5E-16 T 14-09-2016 PAJ_RS07130 0a756e068c40871ad28b5aff54c8b309 462 Gene3D G3DSA:1.20.1250.20 231 433 5.0E-10 T 14-09-2016 PAJ_RS07130 0a756e068c40871ad28b5aff54c8b309 462 Pfam PF13347 MFS/sugar transport protein 17 435 3.6E-103 T 14-09-2016 PAJ_RS07130 0a756e068c40871ad28b5aff54c8b309 462 PANTHER PTHR11328:SF24 10 456 1.1E-141 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 SUPERFAMILY SSF82693 40 124 3.49E-22 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 Gene3D G3DSA:3.30.2090.10 183 264 5.0E-13 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 Gene3D G3DSA:3.30.2090.10 710 791 2.8E-12 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 SUPERFAMILY SSF82693 794 842 3.14E-7 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 SUPERFAMILY SSF82693 665 707 3.14E-7 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.1E-74 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 8.1E-74 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 8.1E-74 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PRINTS PR00702 Acriflavin resistance protein family signature 545 562 8.1E-74 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 8.1E-74 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PRINTS PR00702 Acriflavin resistance protein family signature 611 625 8.1E-74 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 8.1E-74 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.1E-74 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 8.1E-74 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 SUPERFAMILY SSF82714 709 791 2.62E-12 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PANTHER PTHR32063 1 1029 0.0 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 SUPERFAMILY SSF82693 136 182 8.02E-22 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 SUPERFAMILY SSF82693 268 324 8.02E-22 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 SUPERFAMILY SSF82693 558 654 4.36E-16 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 SUPERFAMILY SSF82866 818 1016 3.27E-41 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 SUPERFAMILY SSF82866 290 490 9.29E-46 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 Gene3D G3DSA:1.10.3850.10 276 492 1.8E-56 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 Gene3D G3DSA:1.10.3850.10 800 1016 9.1E-52 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 Pfam PF00873 AcrB/AcrD/AcrF family 4 1014 0.0 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 SUPERFAMILY SSF82714 183 266 1.01E-13 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 PANTHER PTHR32063:SF34 1 1029 0.0 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 Gene3D G3DSA:3.30.70.1430 40 141 2.0E-28 T 14-09-2016 PAJ_RS20030 72b35457075b5bef0301257e6642983d 1033 Gene3D G3DSA:3.30.70.1430 561 652 9.7E-14 T 14-09-2016 PAJ_RS20860 555d7d6c3f1e07122ed958609c854ac6 263 SUPERFAMILY SSF52540 21 261 3.0E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20860 555d7d6c3f1e07122ed958609c854ac6 263 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 22 263 5.2E-113 T 14-09-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD PAJ_RS20860 555d7d6c3f1e07122ed958609c854ac6 263 PANTHER PTHR24220:SF366 24 263 2.1E-138 T 14-09-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD PAJ_RS20860 555d7d6c3f1e07122ed958609c854ac6 263 Gene3D G3DSA:3.40.50.300 19 260 3.7E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20860 555d7d6c3f1e07122ed958609c854ac6 263 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 240 262 1.3E-7 T 14-09-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PAJ_RS20860 555d7d6c3f1e07122ed958609c854ac6 263 Pfam PF00005 ABC transporter 38 192 3.1E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS20860 555d7d6c3f1e07122ed958609c854ac6 263 PANTHER PTHR24220 24 263 2.1E-138 T 14-09-2016 PAJ_RS06270 4dd8046971052e64ae73098e3f1bcfe0 297 SUPERFAMILY SSF46894 21 101 1.22E-10 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS06270 4dd8046971052e64ae73098e3f1bcfe0 297 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 101 6.0E-9 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS06270 4dd8046971052e64ae73098e3f1bcfe0 297 Gene3D G3DSA:1.10.10.10 11 103 2.7E-9 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06270 4dd8046971052e64ae73098e3f1bcfe0 297 SMART SM00862 24 101 9.0E-7 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS01065 131347db1c7ea2eb9fa9e9411c2b31f1 386 Pfam PF00155 Aminotransferase class I and II 31 383 1.4E-55 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS01065 131347db1c7ea2eb9fa9e9411c2b31f1 386 PANTHER PTHR11751 11 386 8.1E-149 T 14-09-2016 PAJ_RS01065 131347db1c7ea2eb9fa9e9411c2b31f1 386 SUPERFAMILY SSF53383 11 385 1.17E-97 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS01065 131347db1c7ea2eb9fa9e9411c2b31f1 386 Gene3D G3DSA:3.40.640.10 45 272 3.1E-70 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS01065 131347db1c7ea2eb9fa9e9411c2b31f1 386 Gene3D G3DSA:3.90.1150.10 273 383 9.1E-22 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS01065 131347db1c7ea2eb9fa9e9411c2b31f1 386 PANTHER PTHR11751:SF301 11 386 8.1E-149 T 14-09-2016 PAJ_RS09225 488312c47579f29920c2151ad6c62dc2 625 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 625 3.1E-188 T 14-09-2016 IPR010272 Type VI secretion system, TssF-like PAJ_RS09225 488312c47579f29920c2151ad6c62dc2 625 PANTHER PTHR35370:SF1 2 625 5.0E-222 T 14-09-2016 PAJ_RS09225 488312c47579f29920c2151ad6c62dc2 625 Pfam PF05947 Type VI secretion system, ImpG, VasA, VC_A0110 6 624 6.8E-222 T 14-09-2016 IPR010272 Type VI secretion system, TssF-like PAJ_RS09225 488312c47579f29920c2151ad6c62dc2 625 PIRSF PIRSF028304 1 625 5.4E-177 T 14-09-2016 IPR010272 Type VI secretion system, TssF-like PAJ_RS09225 488312c47579f29920c2151ad6c62dc2 625 PANTHER PTHR35370 2 625 5.0E-222 T 14-09-2016 PAJ_RS08390 7da294ece49deaa58c7a8134b67ad283 247 Gene3D G3DSA:3.30.70.980 135 205 6.9E-29 T 14-09-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 PAJ_RS08390 7da294ece49deaa58c7a8134b67ad283 247 Gene3D G3DSA:3.30.1270.10 82 134 2.5E-41 T 14-09-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 PAJ_RS08390 7da294ece49deaa58c7a8134b67ad283 247 Gene3D G3DSA:3.30.1270.10 212 246 2.5E-41 T 14-09-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 PAJ_RS08390 7da294ece49deaa58c7a8134b67ad283 247 PANTHER PTHR12532 1 241 1.2E-119 T 14-09-2016 IPR002876 Transcriptional regulator TACO1-like PAJ_RS08390 7da294ece49deaa58c7a8134b67ad283 247 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 35.948 T 14-09-2016 IPR002876 Transcriptional regulator TACO1-like PAJ_RS08390 7da294ece49deaa58c7a8134b67ad283 247 Gene3D G3DSA:1.10.10.200 1 79 5.3E-34 T 14-09-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like PAJ_RS08390 7da294ece49deaa58c7a8134b67ad283 247 SUPERFAMILY SSF75625 3 246 8.89E-96 T 14-09-2016 IPR029072 YebC-like PAJ_RS08390 7da294ece49deaa58c7a8134b67ad283 247 Pfam PF01709 Transcriptional regulator 5 236 3.0E-92 T 14-09-2016 IPR002876 Transcriptional regulator TACO1-like PAJ_RS08390 7da294ece49deaa58c7a8134b67ad283 247 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 1.9E-103 T 14-09-2016 IPR002876 Transcriptional regulator TACO1-like PAJ_RS02990 d141f522faffa4e819e37847f73db8c8 171 SMART SM00852 14 158 1.3E-23 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS02990 d141f522faffa4e819e37847f73db8c8 171 PANTHER PTHR10192 5 170 1.0E-80 T 14-09-2016 PAJ_RS02990 d141f522faffa4e819e37847f73db8c8 171 PANTHER PTHR10192:SF18 5 170 1.0E-80 T 14-09-2016 PAJ_RS02990 d141f522faffa4e819e37847f73db8c8 171 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 14 151 2.4E-31 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS02990 d141f522faffa4e819e37847f73db8c8 171 Gene3D G3DSA:3.40.980.10 7 169 7.0E-45 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS02990 d141f522faffa4e819e37847f73db8c8 171 SUPERFAMILY SSF53218 6 168 2.36E-41 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS02990 d141f522faffa4e819e37847f73db8c8 171 PIRSF PIRSF006443 2 166 1.3E-57 T 14-09-2016 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 UniPathway: UPA00344 PAJ_RS02990 d141f522faffa4e819e37847f73db8c8 171 Pfam PF00994 Probable molybdopterin binding domain 15 155 2.9E-29 T 14-09-2016 IPR001453 MoaB/Mog domain PAJ_RS02990 d141f522faffa4e819e37847f73db8c8 171 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 8 169 1.1E-74 T 14-09-2016 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 UniPathway: UPA00344 PAJ_RS08535 e73d0659b4b44d3769178918c574725d 192 SUPERFAMILY SSF160930 5 160 1.83E-63 T 14-09-2016 PAJ_RS08535 e73d0659b4b44d3769178918c574725d 192 PIRSF PIRSF003159 1 181 9.9E-90 T 14-09-2016 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 PAJ_RS08535 e73d0659b4b44d3769178918c574725d 192 Pfam PF05280 Flagellar transcriptional activator (FlhC) 1 172 4.2E-81 T 14-09-2016 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 PAJ_RS08535 e73d0659b4b44d3769178918c574725d 192 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 1 192 5.0E-98 T 14-09-2016 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 PAJ_RS08535 e73d0659b4b44d3769178918c574725d 192 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 1 186 45.113 T 14-09-2016 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 PAJ_RS12280 13580963c272fbe0c30b89ae190fb274 312 SUPERFAMILY SSF52283 8 136 1.68E-25 T 14-09-2016 PAJ_RS12280 13580963c272fbe0c30b89ae190fb274 312 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 193 215 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PAJ_RS12280 13580963c272fbe0c30b89ae190fb274 312 SUPERFAMILY SSF51735 101 284 2.98E-57 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12280 13580963c272fbe0c30b89ae190fb274 312 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 11 309 1.1E-21 T 14-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PAJ_RS12280 13580963c272fbe0c30b89ae190fb274 312 Gene3D G3DSA:3.40.50.720 4 112 1.6E-24 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12280 13580963c272fbe0c30b89ae190fb274 312 Gene3D G3DSA:3.40.50.720 113 285 3.0E-64 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12280 13580963c272fbe0c30b89ae190fb274 312 PANTHER PTHR10996 1 310 1.3E-98 T 14-09-2016 PAJ_RS12280 13580963c272fbe0c30b89ae190fb274 312 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 222 238 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PAJ_RS12280 13580963c272fbe0c30b89ae190fb274 312 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 283 4.7E-58 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PAJ_RS13495 36dea4202b3f1344dca34f594bc8ecec 379 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 368 2.5E-138 T 14-09-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- PAJ_RS13495 36dea4202b3f1344dca34f594bc8ecec 379 SUPERFAMILY SSF102114 5 376 3.14E-110 T 14-09-2016 PAJ_RS13495 36dea4202b3f1344dca34f594bc8ecec 379 Pfam PF06969 HemN C-terminal domain 304 364 3.6E-9 T 14-09-2016 IPR010723 HemN, C-terminal PAJ_RS13495 36dea4202b3f1344dca34f594bc8ecec 379 PANTHER PTHR13932 5 378 3.7E-223 T 14-09-2016 PAJ_RS13495 36dea4202b3f1344dca34f594bc8ecec 379 Pfam PF04055 Radical SAM superfamily 11 179 1.1E-18 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS13495 36dea4202b3f1344dca34f594bc8ecec 379 Gene3D G3DSA:3.80.30.20 7 239 2.1E-28 T 14-09-2016 IPR023404 Radical SAM, alpha/beta horseshoe PAJ_RS13495 36dea4202b3f1344dca34f594bc8ecec 379 PANTHER PTHR13932:SF7 5 378 3.7E-223 T 14-09-2016 PAJ_RS13495 36dea4202b3f1344dca34f594bc8ecec 379 SMART SM00729 6 223 2.3E-54 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PAJ_RS09335 8d129d5d4086e156be66f612ca8f29a9 247 Gene3D G3DSA:1.10.10.10 132 233 2.0E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09335 8d129d5d4086e156be66f612ca8f29a9 247 Gene3D G3DSA:3.40.50.2300 2 123 4.8E-33 T 14-09-2016 PAJ_RS09335 8d129d5d4086e156be66f612ca8f29a9 247 SUPERFAMILY SSF52172 2 124 5.69E-33 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS09335 8d129d5d4086e156be66f612ca8f29a9 247 Pfam PF00072 Response regulator receiver domain 5 114 2.7E-23 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS09335 8d129d5d4086e156be66f612ca8f29a9 247 PANTHER PTHR26402:SF292 3 234 1.5E-65 T 14-09-2016 PAJ_RS09335 8d129d5d4086e156be66f612ca8f29a9 247 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 230 2.0E-22 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS09335 8d129d5d4086e156be66f612ca8f29a9 247 SUPERFAMILY SSF46894 130 231 2.24E-24 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS09335 8d129d5d4086e156be66f612ca8f29a9 247 PANTHER PTHR26402 3 234 1.5E-65 T 14-09-2016 PAJ_RS09335 8d129d5d4086e156be66f612ca8f29a9 247 SMART SM00862 154 230 1.5E-19 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS09335 8d129d5d4086e156be66f612ca8f29a9 247 SMART SM00448 3 115 2.7E-29 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 SUPERFAMILY SSF56784 9 217 1.79E-50 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 Gene3D G3DSA:3.40.50.1000 82 217 8.6E-37 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 191 7.6E-12 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 4.9E-8 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 4.9E-8 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 4.9E-8 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 4.9E-8 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 PANTHER PTHR18901:SF34 1 217 1.3E-66 T 14-09-2016 PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 Gene3D G3DSA:1.10.150.240 20 81 5.0E-33 T 14-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 191 1.1E-22 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS05735 643b681fd0b6251cf25cca1ddabbbcb2 222 PANTHER PTHR18901 1 217 1.3E-66 T 14-09-2016 PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 SUPERFAMILY SSF51735 1 145 2.11E-39 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 PANTHER PTHR11540:SF22 1 312 3.5E-224 T 14-09-2016 PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 PANTHER PTHR11540 1 312 3.5E-224 T 14-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 8.3E-46 T 14-09-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 14-09-2016 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: REACT_474 PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 310 1.5E-51 T 14-09-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 Gene3D G3DSA:3.40.50.720 1 146 2.4E-57 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 PIRSF PIRSF000102 1 311 4.4E-60 T 14-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 Gene3D G3DSA:3.90.110.10 147 311 8.8E-65 T 14-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 58.036 T 14-09-2016 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 1.1E-136 T 14-09-2016 IPR010097 Malate dehydrogenase, type 1 GO:0006108|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 PAJ_RS15460 112bdccb853b9c6534b774d508611ed2 312 SUPERFAMILY SSF56327 146 311 1.31E-42 T 14-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 PAJ_RS12015 9fe18d6b056232c6979f4afde3c14c59 82 Gene3D G3DSA:3.30.70.20 4 71 3.1E-16 T 14-09-2016 PAJ_RS12015 9fe18d6b056232c6979f4afde3c14c59 82 PANTHER PTHR24960 1 81 1.6E-28 T 14-09-2016 PAJ_RS12015 9fe18d6b056232c6979f4afde3c14c59 82 Pfam PF12838 4Fe-4S dicluster domain 8 56 2.5E-6 T 14-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PAJ_RS12015 9fe18d6b056232c6979f4afde3c14c59 82 SUPERFAMILY SSF54862 5 65 3.91E-17 T 14-09-2016 PAJ_RS12015 9fe18d6b056232c6979f4afde3c14c59 82 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS12015 9fe18d6b056232c6979f4afde3c14c59 82 PANTHER PTHR24960:SF38 1 81 1.6E-28 T 14-09-2016 PAJ_RS03535 739450dc149ac2432ef4c7a4bf7c7e72 106 Gene3D G3DSA:3.30.1390.10 4 106 4.2E-44 T 14-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PAJ_RS03535 739450dc149ac2432ef4c7a4bf7c7e72 106 PANTHER PTHR33473 1 106 6.5E-46 T 14-09-2016 PAJ_RS03535 739450dc149ac2432ef4c7a4bf7c7e72 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 102 1.5E-33 T 14-09-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 PAJ_RS03535 739450dc149ac2432ef4c7a4bf7c7e72 106 SUPERFAMILY SSF54736 21 105 1.73E-33 T 14-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PAJ_RS03535 739450dc149ac2432ef4c7a4bf7c7e72 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 2 101 28.03 T 14-09-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS PAJ_RS18415 ef9a88961fd4413963539abea262c5d1 317 PANTHER PTHR21535 7 317 1.6E-163 T 14-09-2016 PAJ_RS18415 ef9a88961fd4413963539abea262c5d1 317 Pfam PF01544 CorA-like Mg2+ transporter protein 27 313 8.5E-56 T 14-09-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 PAJ_RS18415 ef9a88961fd4413963539abea262c5d1 317 SUPERFAMILY SSF144083 252 315 2.09E-20 T 14-09-2016 PAJ_RS18415 ef9a88961fd4413963539abea262c5d1 317 SUPERFAMILY SSF143865 1 256 2.35E-38 T 14-09-2016 PAJ_RS18415 ef9a88961fd4413963539abea262c5d1 317 Gene3D G3DSA:1.20.58.340 241 317 3.3E-28 T 14-09-2016 PAJ_RS18415 ef9a88961fd4413963539abea262c5d1 317 PANTHER PTHR21535:SF37 7 317 1.6E-163 T 14-09-2016 PAJ_RS18415 ef9a88961fd4413963539abea262c5d1 317 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 3 317 7.5E-108 T 14-09-2016 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 PAJ_RS11245 384060dac63ed86bd9a69053df8134b7 253 Pfam PF01226 Formate/nitrite transporter 8 248 6.0E-77 T 14-09-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 PAJ_RS11245 384060dac63ed86bd9a69053df8134b7 253 Gene3D G3DSA:1.20.1080.10 24 251 1.5E-80 T 14-09-2016 IPR023271 Aquaporin-like PAJ_RS11245 384060dac63ed86bd9a69053df8134b7 253 PANTHER PTHR30520 1 251 8.2E-88 T 14-09-2016 PAJ_RS11245 384060dac63ed86bd9a69053df8134b7 253 PANTHER PTHR30520:SF0 1 251 8.2E-88 T 14-09-2016 PAJ_RS11245 384060dac63ed86bd9a69053df8134b7 253 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 161 171 - T 14-09-2016 IPR024002 Formate/nitrite transporter, conserved site PAJ_RS03140 832b403953683a0394e007a95f2ab9af 243 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 239 5.5E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03140 832b403953683a0394e007a95f2ab9af 243 Gene3D G3DSA:1.10.3720.10 10 240 2.8E-27 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03140 832b403953683a0394e007a95f2ab9af 243 PANTHER PTHR30177 1 238 1.4E-118 T 14-09-2016 PAJ_RS03140 832b403953683a0394e007a95f2ab9af 243 PANTHER PTHR30177:SF11 1 238 1.4E-118 T 14-09-2016 PAJ_RS03140 832b403953683a0394e007a95f2ab9af 243 SUPERFAMILY SSF161098 44 233 1.44E-32 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS13075 1cc4f48d2235d45bb2ff9850ebf5704b 366 Gene3D G3DSA:3.40.50.150 184 317 3.0E-15 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS13075 1cc4f48d2235d45bb2ff9850ebf5704b 366 PIRSF PIRSF028774 1 360 1.9E-186 T 14-09-2016 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 PAJ_RS13075 1cc4f48d2235d45bb2ff9850ebf5704b 366 Pfam PF01728 FtsJ-like methyltransferase 186 251 9.0E-9 T 14-09-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 PAJ_RS13075 1cc4f48d2235d45bb2ff9850ebf5704b 366 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 355 86.451 T 14-09-2016 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 PAJ_RS13075 1cc4f48d2235d45bb2ff9850ebf5704b 366 PANTHER PTHR37524:SF2 1 360 1.2E-218 T 14-09-2016 PAJ_RS13075 1cc4f48d2235d45bb2ff9850ebf5704b 366 SUPERFAMILY SSF53335 184 296 2.68E-13 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS13075 1cc4f48d2235d45bb2ff9850ebf5704b 366 PANTHER PTHR37524 1 360 1.2E-218 T 14-09-2016 PAJ_RS19155 94a5a14553c11913e4e7f77adbae2e63 469 Gene3D G3DSA:1.20.1250.20 79 230 1.5E-19 T 14-09-2016 PAJ_RS19155 94a5a14553c11913e4e7f77adbae2e63 469 Gene3D G3DSA:1.20.1250.20 269 463 1.9E-22 T 14-09-2016 PAJ_RS19155 94a5a14553c11913e4e7f77adbae2e63 469 SUPERFAMILY SSF103473 24 468 2.62E-70 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS19155 94a5a14553c11913e4e7f77adbae2e63 469 ProSitePatterns PS00217 Sugar transport proteins signature 2. 141 166 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS19155 94a5a14553c11913e4e7f77adbae2e63 469 PANTHER PTHR24064:SF277 21 469 4.9E-179 T 14-09-2016 PAJ_RS19155 94a5a14553c11913e4e7f77adbae2e63 469 PANTHER PTHR24064 21 469 4.9E-179 T 14-09-2016 PAJ_RS19155 94a5a14553c11913e4e7f77adbae2e63 469 Pfam PF00083 Sugar (and other) transporter 41 469 7.9E-37 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS01965 9933f969044986ea12b46b80138be1f4 285 PANTHER PTHR10438 7 135 1.5E-63 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PAJ_RS01965 9933f969044986ea12b46b80138be1f4 285 PANTHER PTHR10438:SF288 7 135 1.5E-63 T 14-09-2016 PAJ_RS01965 9933f969044986ea12b46b80138be1f4 285 SUPERFAMILY SSF48452 119 247 5.7E-11 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS01965 9933f969044986ea12b46b80138be1f4 285 Gene3D G3DSA:1.25.40.10 111 197 5.9E-33 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS01965 9933f969044986ea12b46b80138be1f4 285 Pfam PF00085 Thioredoxin 8 109 6.7E-20 T 14-09-2016 IPR013766 Thioredoxin domain GO:0045454 PAJ_RS01965 9933f969044986ea12b46b80138be1f4 285 Pfam PF14559 Tetratricopeptide repeat 125 191 1.1E-20 T 14-09-2016 PAJ_RS01965 9933f969044986ea12b46b80138be1f4 285 Pfam PF14561 Tetratricopeptide repeat 196 285 2.8E-29 T 14-09-2016 PAJ_RS01965 9933f969044986ea12b46b80138be1f4 285 Gene3D G3DSA:3.40.30.10 6 110 7.5E-29 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS01965 9933f969044986ea12b46b80138be1f4 285 SUPERFAMILY SSF52833 5 113 1.23E-30 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS01965 9933f969044986ea12b46b80138be1f4 285 Gene3D G3DSA:1.25.40.10 198 285 9.8E-33 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS06740 d282a5aca8c19b6d40e3c4c54c7f4031 298 Gene3D G3DSA:1.10.10.10 5 88 7.8E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06740 d282a5aca8c19b6d40e3c4c54c7f4031 298 Gene3D G3DSA:3.40.190.10 92 176 5.7E-13 T 14-09-2016 PAJ_RS06740 d282a5aca8c19b6d40e3c4c54c7f4031 298 Pfam PF03466 LysR substrate binding domain 91 295 1.3E-40 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS06740 d282a5aca8c19b6d40e3c4c54c7f4031 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 2.1E-15 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS06740 d282a5aca8c19b6d40e3c4c54c7f4031 298 SUPERFAMILY SSF46785 6 87 6.94E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06740 d282a5aca8c19b6d40e3c4c54c7f4031 298 SUPERFAMILY SSF53850 92 297 2.92E-41 T 14-09-2016 PAJ_RS06740 d282a5aca8c19b6d40e3c4c54c7f4031 298 Gene3D G3DSA:3.40.190.10 177 264 3.4E-24 T 14-09-2016 PAJ_RS06740 d282a5aca8c19b6d40e3c4c54c7f4031 298 PANTHER PTHR30419 1 297 4.4E-56 T 14-09-2016 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 Gene3D G3DSA:1.10.8.10 213 243 4.1E-35 T 14-09-2016 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 Gene3D G3DSA:1.10.8.10 111 177 4.1E-35 T 14-09-2016 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 337 407 2.1E-5 T 14-09-2016 IPR019489 Clp ATPase, C-terminal PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 445 1.9E-229 T 14-09-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 Gene3D G3DSA:3.40.50.300 245 333 2.5E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 Gene3D G3DSA:3.40.50.300 3 110 2.5E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 SMART SM00382 49 334 2.1E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 SUPERFAMILY SSF52540 3 443 2.53E-92 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 PANTHER PTHR11262:SF3 1 105 1.0E-212 T 14-09-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 Pfam PF07724 AAA domain (Cdc48 subfamily) 185 331 1.7E-40 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 SMART SM01086 337 436 6.3E-22 T 14-09-2016 IPR019489 Clp ATPase, C-terminal PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 100 1.3E-6 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 PANTHER PTHR11262 1 105 1.0E-212 T 14-09-2016 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 PANTHER PTHR11262 218 445 1.0E-212 T 14-09-2016 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 Gene3D G3DSA:1.10.8.60 337 445 4.2E-35 T 14-09-2016 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 PANTHER PTHR11262:SF3 218 445 1.0E-212 T 14-09-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 PAJ_RS17065 f18f5609dd53e2fbff32d3a4de7c0385 445 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 445 43.55 T 14-09-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 24.59 T 14-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 14-09-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 SUPERFAMILY SSF82679 6 116 4.71E-40 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 SMART SM00739 127 154 1.9E-6 T 14-09-2016 IPR005824 KOW PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 PANTHER PTHR30265 3 180 1.1E-86 T 14-09-2016 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 Gene3D G3DSA:3.30.70.940 6 116 8.7E-43 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 180 3.0E-70 T 14-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 Pfam PF00467 KOW motif 130 160 4.3E-8 T 14-09-2016 IPR005824 KOW PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 3.5E-20 T 14-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 3.5E-20 T 14-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 3.5E-20 T 14-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 SUPERFAMILY SSF50104 125 180 2.46E-19 T 14-09-2016 IPR008991 Translation protein SH3-like domain PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 SMART SM00738 6 115 7.0E-51 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 Pfam PF02357 Transcription termination factor nusG 7 112 2.4E-27 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 PAJ_RS18660 b5e99c4ace6822542fc5b144c31d9081 181 Gene3D G3DSA:2.30.30.30 120 180 6.2E-31 T 14-09-2016 IPR014722 Ribosomal protein L2 domain 2 PAJ_RS02930 2fb9707a477318f0538b88a028ddca92 272 PANTHER PTHR10000 1 272 2.8E-80 T 14-09-2016 PAJ_RS02930 2fb9707a477318f0538b88a028ddca92 272 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 267 3.1E-61 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS02930 2fb9707a477318f0538b88a028ddca92 272 ProSitePatterns PS01229 Hypothetical cof family signature 2. 221 243 - T 14-09-2016 PAJ_RS02930 2fb9707a477318f0538b88a028ddca92 272 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 265 7.0E-65 T 14-09-2016 IPR000150 Cof protein GO:0016787 PAJ_RS02930 2fb9707a477318f0538b88a028ddca92 272 SUPERFAMILY SSF56784 1 271 7.05E-64 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS02930 2fb9707a477318f0538b88a028ddca92 272 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 81 7.2E-13 T 14-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 PAJ_RS02930 2fb9707a477318f0538b88a028ddca92 272 PANTHER PTHR10000:SF8 1 272 2.8E-80 T 14-09-2016 PAJ_RS02930 2fb9707a477318f0538b88a028ddca92 272 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 14-09-2016 IPR000150 Cof protein GO:0016787 PAJ_RS02930 2fb9707a477318f0538b88a028ddca92 272 Gene3D G3DSA:3.40.50.1000 1 73 8.2E-51 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS02930 2fb9707a477318f0538b88a028ddca92 272 Gene3D G3DSA:3.40.50.1000 176 272 8.2E-51 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS04440 9204caa459e00162e621527ea7d10aa6 100 Pfam PF04316 Anti-sigma-28 factor, FlgM 43 90 8.4E-10 T 14-09-2016 IPR031316 Anti-sigma-28 factor FlgM, C-terminal PAJ_RS04440 9204caa459e00162e621527ea7d10aa6 100 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 92 4.7E-18 T 14-09-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 PAJ_RS04440 9204caa459e00162e621527ea7d10aa6 100 SUPERFAMILY SSF101498 1 91 1.96E-13 T 14-09-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 PAJ_RS09450 fdfda36f9d2939e91b7f73751748153f 434 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 18 390 1.0E-22 T 14-09-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PAJ_RS09450 fdfda36f9d2939e91b7f73751748153f 434 PANTHER PTHR30569 3 422 1.0E-36 T 14-09-2016 IPR030191 Cytosine permease GO:0015209|GO:0016021 PAJ_RS08425 b0b4bd679f54e54de0f5a652b62cc921 207 PANTHER PTHR30086 1 204 1.6E-52 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS08425 b0b4bd679f54e54de0f5a652b62cc921 207 PIRSF PIRSF006324 1 207 6.8E-52 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS08425 b0b4bd679f54e54de0f5a652b62cc921 207 PANTHER PTHR30086:SF2 1 204 1.6E-52 T 14-09-2016 PAJ_RS08425 b0b4bd679f54e54de0f5a652b62cc921 207 Pfam PF01810 LysE type translocator 13 205 3.9E-35 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 Gene3D G3DSA:1.10.1660.10 67 144 2.9E-13 T 14-09-2016 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 SMART SM00422 12 80 2.8E-20 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 Gene3D G3DSA:1.10.1660.10 11 66 4.2E-18 T 14-09-2016 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 24 2.5E-12 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 47 67 2.5E-12 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 24 37 2.5E-12 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 12 150 4.4E-66 T 14-09-2016 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 SUPERFAMILY SSF46955 12 134 3.66E-27 T 14-09-2016 IPR009061 Putative DNA-binding domain PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 PANTHER PTHR30204 4 142 8.7E-71 T 14-09-2016 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 ProSitePatterns PS00552 MerR-type HTH domain signature. 15 37 - T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 PANTHER PTHR30204:SF0 4 142 8.7E-71 T 14-09-2016 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 Pfam PF09278 MerR, DNA binding 54 119 2.7E-14 T 14-09-2016 IPR015358 Transcription regulator MerR, DNA binding PAJ_RS19045 35f912ad4ed7fda9a34e3811a8b56694 161 Pfam PF00376 MerR family regulatory protein 13 49 4.0E-13 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 Pfam PF01476 LysM domain 514 556 5.3E-11 T 14-09-2016 IPR018392 LysM domain PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 Pfam PF01476 LysM domain 451 493 8.0E-13 T 14-09-2016 IPR018392 LysM domain PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 SUPERFAMILY SSF53187 333 409 5.34E-50 T 14-09-2016 PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 SUPERFAMILY SSF53187 185 281 5.34E-50 T 14-09-2016 PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 Gene3D G3DSA:3.40.630.40 334 409 1.8E-56 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 Gene3D G3DSA:3.40.630.40 185 282 1.8E-56 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 SUPERFAMILY SSF54106 449 493 6.93E-11 T 14-09-2016 IPR018392 LysM domain PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 SMART SM00257 450 493 2.0E-15 T 14-09-2016 IPR018392 LysM domain PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 SMART SM00257 513 556 1.3E-14 T 14-09-2016 IPR018392 LysM domain PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 PANTHER PTHR30404:SF1 1 439 2.3E-214 T 14-09-2016 PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 SUPERFAMILY SSF54106 512 556 5.62E-10 T 14-09-2016 IPR018392 LysM domain PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 Gene3D G3DSA:3.10.350.10 449 494 7.3E-16 T 14-09-2016 IPR018392 LysM domain PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 187 406 2.7E-45 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 Gene3D G3DSA:3.10.350.10 512 556 7.1E-16 T 14-09-2016 IPR018392 LysM domain PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 Pfam PF11741 AMIN domain 33 117 5.6E-8 T 14-09-2016 IPR021731 AMIN domain PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 PANTHER PTHR30404 1 439 2.3E-214 T 14-09-2016 PAJ_RS15405 14e02995eb349bf48ea1469f1be3ffd3 558 SMART SM00646 247 406 5.0E-70 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 PANTHER PTHR11751:SF402 13 97 1.3E-57 T 14-09-2016 PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 Gene3D G3DSA:1.10.10.10 8 76 2.3E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 7.3E-20 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 Pfam PF07840 FadR C-terminal domain 72 235 1.2E-68 T 14-09-2016 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 PANTHER PTHR11751 13 97 1.3E-57 T 14-09-2016 PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 SUPERFAMILY SSF46785 11 87 2.29E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 235 5.9E-118 T 14-09-2016 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 Gene3D G3DSA:1.20.120.530 80 236 2.9E-60 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 SUPERFAMILY SSF48008 79 231 7.98E-60 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 239 152.662 T 14-09-2016 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 PAJ_RS08000 947ea54afe22ddc69107eda89a91d3e3 239 SMART SM00345 12 71 4.4E-22 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 Gene3D G3DSA:3.40.190.10 94 180 1.2E-19 T 14-09-2016 PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 PANTHER PTHR30346 4 294 2.5E-116 T 14-09-2016 PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 SUPERFAMILY SSF46785 3 115 1.93E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 Gene3D G3DSA:3.40.190.10 181 268 3.5E-32 T 14-09-2016 PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 Gene3D G3DSA:1.10.10.10 3 84 5.6E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 Pfam PF03466 LysR substrate binding domain 93 297 4.8E-35 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 SUPERFAMILY SSF53850 93 298 9.96E-34 T 14-09-2016 PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 8.2E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 8.2E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 8.2E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 66 4.2E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00955 3d62ab5a397b14d0c2865a16dfa912aa 303 PANTHER PTHR30346:SF13 4 294 2.5E-116 T 14-09-2016 PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 PANTHER PTHR10584 1 338 2.8E-152 T 14-09-2016 PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 Pfam PF00294 pfkB family carbohydrate kinase 11 302 1.5E-54 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 Gene3D G3DSA:3.40.50.620 340 461 1.7E-35 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 SUPERFAMILY SSF53613 12 310 4.37E-61 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 6.9E-18 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 Pfam PF01467 Cytidylyltransferase-like 345 468 1.1E-14 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 43.558 T 14-09-2016 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 472 1.4E-63 T 14-09-2016 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 6 312 1.7E-130 T 14-09-2016 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 Gene3D G3DSA:3.40.1190.20 12 313 8.4E-69 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 SUPERFAMILY SSF52374 340 471 1.69E-21 T 14-09-2016 PAJ_RS14580 a73c7f8412d97b26255be71eb91d5551 474 PANTHER PTHR10584:SF159 1 338 2.8E-152 T 14-09-2016 PAJ_RS03300 9319b232ba9b6eb3cd6b5666e10c1f47 152 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 38 92 5.2E-12 T 14-09-2016 IPR022687 DTXR-type HTH domain GO:0003677 PAJ_RS03300 9319b232ba9b6eb3cd6b5666e10c1f47 152 Gene3D G3DSA:1.10.60.10 107 150 1.0E-17 T 14-09-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 PAJ_RS03300 9319b232ba9b6eb3cd6b5666e10c1f47 152 SUPERFAMILY SSF46785 41 145 1.14E-11 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS03300 9319b232ba9b6eb3cd6b5666e10c1f47 152 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 95 150 1.0E-12 T 14-09-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 PAJ_RS03300 9319b232ba9b6eb3cd6b5666e10c1f47 152 PANTHER PTHR33238:SF1 35 151 4.6E-22 T 14-09-2016 PAJ_RS03300 9319b232ba9b6eb3cd6b5666e10c1f47 152 SMART SM00529 56 152 5.4E-35 T 14-09-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 PAJ_RS03300 9319b232ba9b6eb3cd6b5666e10c1f47 152 PANTHER PTHR33238 35 151 4.6E-22 T 14-09-2016 PAJ_RS03300 9319b232ba9b6eb3cd6b5666e10c1f47 152 Gene3D G3DSA:1.10.10.10 36 103 8.3E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20485 0217d48f19668ce26f59ccb31437b290 192 Gene3D G3DSA:3.90.470.20 100 147 6.0E-15 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS20485 0217d48f19668ce26f59ccb31437b290 192 PANTHER PTHR12215 1 165 1.5E-29 T 14-09-2016 PAJ_RS20485 0217d48f19668ce26f59ccb31437b290 192 SUPERFAMILY SSF56214 24 79 1.1E-6 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS20485 0217d48f19668ce26f59ccb31437b290 192 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 88 148 1.4E-12 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS20485 0217d48f19668ce26f59ccb31437b290 192 SUPERFAMILY SSF56214 87 180 5.36E-17 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS20485 0217d48f19668ce26f59ccb31437b290 192 Gene3D G3DSA:3.90.470.20 51 99 4.1E-10 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS09280 3b624a32433db0a71b0cf5903945bd5e 340 PANTHER PTHR37951 1 338 4.6E-55 T 14-09-2016 PAJ_RS09280 3b624a32433db0a71b0cf5903945bd5e 340 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 3 335 2.2E-71 T 14-09-2016 IPR017740 Type VI secretion system-associated, ImpA PAJ_RS09280 3b624a32433db0a71b0cf5903945bd5e 340 Pfam PF06812 ImpA, N-terminal, type VI secretion system 11 132 1.2E-38 T 14-09-2016 IPR010657 ImpA, N-terminal PAJ_RS09280 3b624a32433db0a71b0cf5903945bd5e 340 PANTHER PTHR37951:SF1 1 338 4.6E-55 T 14-09-2016 PAJ_RS08790 0d06ce46c184c91e2c7225ea80fd0803 1151 Pfam PF00535 Glycosyl transferase family 2 558 678 7.6E-6 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS08790 0d06ce46c184c91e2c7225ea80fd0803 1151 Gene3D G3DSA:3.90.550.10 557 775 4.7E-15 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS08790 0d06ce46c184c91e2c7225ea80fd0803 1151 SUPERFAMILY SSF53448 557 775 9.0E-23 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS08790 0d06ce46c184c91e2c7225ea80fd0803 1151 SUPERFAMILY SSF53448 377 496 1.27E-5 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS17055 006e06dd4fc4d1063676bfc59e0d15c9 314 TIGRFAM TIGR02223 ftsN: cell division protein FtsN 2 308 6.3E-75 T 14-09-2016 IPR011930 Cell division protein FtsN GO:0005515 PAJ_RS17055 006e06dd4fc4d1063676bfc59e0d15c9 314 Pfam PF05036 Sporulation related domain 240 307 8.0E-18 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS17055 006e06dd4fc4d1063676bfc59e0d15c9 314 PANTHER PTHR11064 81 314 8.8E-60 T 14-09-2016 PAJ_RS17055 006e06dd4fc4d1063676bfc59e0d15c9 314 SUPERFAMILY SSF110997 240 309 4.18E-20 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS17055 006e06dd4fc4d1063676bfc59e0d15c9 314 Gene3D G3DSA:3.30.70.1070 236 310 5.9E-30 T 14-09-2016 IPR007730 Sporulation-related domain GO:0042834 PAJ_RS17055 006e06dd4fc4d1063676bfc59e0d15c9 314 Hamap MF_02039 Cell division protein FtsN [ftsN]. 37 314 35.724 T 14-09-2016 IPR011930 Cell division protein FtsN GO:0005515 PAJ_RS17055 006e06dd4fc4d1063676bfc59e0d15c9 314 PANTHER PTHR11064:SF39 81 314 8.8E-60 T 14-09-2016 PAJ_RS19795 d623f0d53e9bdf63a575c6c1e6943bd6 210 Pfam PF05494 MlaC protein 32 197 9.3E-53 T 14-09-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC PAJ_RS19795 d623f0d53e9bdf63a575c6c1e6943bd6 210 PANTHER PTHR36573 1 210 2.6E-79 T 14-09-2016 PAJ_RS19795 d623f0d53e9bdf63a575c6c1e6943bd6 210 Gene3D G3DSA:3.10.450.50 113 171 5.7E-18 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS19795 d623f0d53e9bdf63a575c6c1e6943bd6 210 Gene3D G3DSA:3.10.450.50 25 69 5.7E-18 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS19795 d623f0d53e9bdf63a575c6c1e6943bd6 210 Gene3D G3DSA:1.10.10.640 70 110 2.0E-20 T 14-09-2016 IPR023094 Toluene tolerance protein, alpha-helical PAJ_RS19795 d623f0d53e9bdf63a575c6c1e6943bd6 210 Gene3D G3DSA:1.10.10.640 172 202 2.0E-20 T 14-09-2016 IPR023094 Toluene tolerance protein, alpha-helical PAJ_RS19795 d623f0d53e9bdf63a575c6c1e6943bd6 210 PIRSF PIRSF004649 1 210 1.6E-60 T 14-09-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC PAJ_RS08440 e307492ca2dc1ec8567c8e774d584a78 250 SUPERFAMILY SSF110395 3 243 2.75E-73 T 14-09-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 PAJ_RS08440 e307492ca2dc1ec8567c8e774d584a78 250 Pfam PF03932 CutC family 3 199 9.9E-72 T 14-09-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 PAJ_RS08440 e307492ca2dc1ec8567c8e774d584a78 250 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 2 243 36.98 T 14-09-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 PAJ_RS08440 e307492ca2dc1ec8567c8e774d584a78 250 PANTHER PTHR12598 1 248 2.2E-99 T 14-09-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 PAJ_RS08440 e307492ca2dc1ec8567c8e774d584a78 250 PANTHER PTHR12598:SF0 1 248 2.2E-99 T 14-09-2016 PAJ_RS08440 e307492ca2dc1ec8567c8e774d584a78 250 Gene3D G3DSA:3.20.20.380 1 243 6.6E-88 T 14-09-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 PAJ_RS20180 94b95a66bebe02ff4ee4b1d9f4359718 101 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 27 75 3.8E-5 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS20180 94b95a66bebe02ff4ee4b1d9f4359718 101 SUPERFAMILY SSF47413 13 75 4.44E-8 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS20180 94b95a66bebe02ff4ee4b1d9f4359718 101 Gene3D G3DSA:1.10.260.40 17 75 1.9E-6 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS19365 7862b7e9187a4474b05163eb897c0b9c 296 Pfam PF08021 Siderophore-interacting FAD-binding domain 14 130 4.7E-37 T 14-09-2016 IPR013113 FAD-binding 9, siderophore-interacting PAJ_RS19365 7862b7e9187a4474b05163eb897c0b9c 296 Gene3D G3DSA:3.40.50.80 140 295 5.6E-35 T 14-09-2016 PAJ_RS19365 7862b7e9187a4474b05163eb897c0b9c 296 PANTHER PTHR30157 6 221 3.5E-73 T 14-09-2016 PAJ_RS19365 7862b7e9187a4474b05163eb897c0b9c 296 PANTHER PTHR30157:SF0 6 221 3.5E-73 T 14-09-2016 PAJ_RS19365 7862b7e9187a4474b05163eb897c0b9c 296 Pfam PF04954 Siderophore-interacting protein 147 292 1.3E-32 T 14-09-2016 IPR007037 Siderophore-interacting protein PAJ_RS19365 7862b7e9187a4474b05163eb897c0b9c 296 PANTHER PTHR30157:SF0 247 290 3.5E-73 T 14-09-2016 PAJ_RS19365 7862b7e9187a4474b05163eb897c0b9c 296 SUPERFAMILY SSF63380 6 128 1.63E-12 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PAJ_RS19365 7862b7e9187a4474b05163eb897c0b9c 296 PANTHER PTHR30157 247 290 3.5E-73 T 14-09-2016 PAJ_RS19365 7862b7e9187a4474b05163eb897c0b9c 296 Gene3D G3DSA:2.40.30.10 5 128 5.6E-32 T 14-09-2016 PAJ_RS20645 b0641bcfa427861dfcfca6a9b4848a99 148 Pfam PF07798 Protein of unknown function (DUF1640) 7 125 5.6E-8 T 14-09-2016 IPR024461 Coiled-coil domain-containing protein 90-like PAJ_RS20645 b0641bcfa427861dfcfca6a9b4848a99 148 SUPERFAMILY SSF58100 54 123 7.85E-5 T 14-09-2016 PAJ_RS03390 ca8b6feb26ca0509b3ac3b1c503cefed 218 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 189 1.5E-27 T 14-09-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 PAJ_RS03390 ca8b6feb26ca0509b3ac3b1c503cefed 218 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 199 4.3E-45 T 14-09-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial PAJ_RS03390 ca8b6feb26ca0509b3ac3b1c503cefed 218 Gene3D G3DSA:3.40.50.1000 80 217 3.8E-43 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS03390 ca8b6feb26ca0509b3ac3b1c503cefed 218 PANTHER PTHR10000:SF10 1 213 1.5E-71 T 14-09-2016 PAJ_RS03390 ca8b6feb26ca0509b3ac3b1c503cefed 218 Gene3D G3DSA:1.20.1440.100 16 79 6.5E-17 T 14-09-2016 PAJ_RS03390 ca8b6feb26ca0509b3ac3b1c503cefed 218 PANTHER PTHR10000 1 213 1.5E-71 T 14-09-2016 PAJ_RS03390 ca8b6feb26ca0509b3ac3b1c503cefed 218 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 187 3.4E-37 T 14-09-2016 PAJ_RS03390 ca8b6feb26ca0509b3ac3b1c503cefed 218 SUPERFAMILY SSF56784 1 207 5.76E-29 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS10400 92ed657d8ee202d8bba3ee964e912416 814 Gene3D G3DSA:2.170.130.10 155 283 3.7E-34 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS10400 92ed657d8ee202d8bba3ee964e912416 814 PANTHER PTHR32552:SF10 134 147 1.4E-119 T 14-09-2016 PAJ_RS10400 92ed657d8ee202d8bba3ee964e912416 814 PANTHER PTHR32552:SF10 167 814 1.4E-119 T 14-09-2016 PAJ_RS10400 92ed657d8ee202d8bba3ee964e912416 814 SUPERFAMILY SSF56935 134 814 5.19E-116 T 14-09-2016 PAJ_RS10400 92ed657d8ee202d8bba3ee964e912416 814 Gene3D G3DSA:2.40.170.20 292 814 1.9E-109 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS10400 92ed657d8ee202d8bba3ee964e912416 814 PANTHER PTHR32552 134 147 1.4E-119 T 14-09-2016 PAJ_RS10400 92ed657d8ee202d8bba3ee964e912416 814 PANTHER PTHR32552 167 814 1.4E-119 T 14-09-2016 PAJ_RS10400 92ed657d8ee202d8bba3ee964e912416 814 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 177 814 3.0E-96 T 14-09-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PAJ_RS10400 92ed657d8ee202d8bba3ee964e912416 814 Pfam PF07715 TonB-dependent Receptor Plug Domain 175 276 8.1E-19 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS14080 0b3e0a9566200d6ee311cd70b6e77138 133 PANTHER PTHR36437 1 132 2.0E-53 T 14-09-2016 PAJ_RS14080 0b3e0a9566200d6ee311cd70b6e77138 133 SUPERFAMILY SSF54593 8 131 2.69E-26 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS14080 0b3e0a9566200d6ee311cd70b6e77138 133 Gene3D G3DSA:3.10.180.10 8 131 7.1E-21 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS14080 0b3e0a9566200d6ee311cd70b6e77138 133 PANTHER PTHR36437:SF2 1 132 2.0E-53 T 14-09-2016 PAJ_RS14080 0b3e0a9566200d6ee311cd70b6e77138 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 126 4.5E-15 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PAJ_RS15910 bd75a7d1204ca36d0b405a365967c722 128 Pfam PF02635 DsrE/DsrF-like family 1 128 4.2E-28 T 14-09-2016 IPR003787 Sulphur relay, DsrE/F-like protein PAJ_RS15910 bd75a7d1204ca36d0b405a365967c722 128 PANTHER PTHR34874 1 128 4.8E-60 T 14-09-2016 PAJ_RS15910 bd75a7d1204ca36d0b405a365967c722 128 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 2 128 1.1E-51 T 14-09-2016 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 PAJ_RS15910 bd75a7d1204ca36d0b405a365967c722 128 SUPERFAMILY SSF75169 1 128 9.03E-37 T 14-09-2016 IPR027396 DsrEFH-like PAJ_RS15910 bd75a7d1204ca36d0b405a365967c722 128 PANTHER PTHR34874:SF1 1 128 4.8E-60 T 14-09-2016 PAJ_RS15910 bd75a7d1204ca36d0b405a365967c722 128 Gene3D G3DSA:3.40.1260.10 1 128 2.7E-29 T 14-09-2016 IPR027396 DsrEFH-like PAJ_RS15910 bd75a7d1204ca36d0b405a365967c722 128 Hamap MF_00390 Sulfurtransferase TusD [tusD]. 1 128 38.591 T 14-09-2016 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 PAJ_RS20910 efbe21c764e790f979d151fe4bc0eec1 215 Gene3D G3DSA:3.40.50.1240 2 210 3.1E-61 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS20910 efbe21c764e790f979d151fe4bc0eec1 215 Hamap MF_01040 Probable phosphoglycerate mutase GpmB [gpmB]. 1 215 53.187 T 14-09-2016 IPR023086 Phosphoglycerate mutase, GpmB, probable GO:0004619|GO:0006096 UniPathway: UPA00109 PAJ_RS20910 efbe21c764e790f979d151fe4bc0eec1 215 PANTHER PTHR23029:SF53 1 215 1.1E-136 T 14-09-2016 PAJ_RS20910 efbe21c764e790f979d151fe4bc0eec1 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 194 1.0E-57 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PAJ_RS20910 efbe21c764e790f979d151fe4bc0eec1 215 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 14-09-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 PAJ_RS20910 efbe21c764e790f979d151fe4bc0eec1 215 PANTHER PTHR23029 1 215 1.1E-136 T 14-09-2016 PAJ_RS20910 efbe21c764e790f979d151fe4bc0eec1 215 SUPERFAMILY SSF53254 1 209 5.37E-58 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS20910 efbe21c764e790f979d151fe4bc0eec1 215 SMART SM00855 3 157 1.3E-25 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PAJ_RS01555 8d23c368323028815f65b41e640b3c77 382 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 361 1.1E-93 T 14-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS01555 8d23c368323028815f65b41e640b3c77 382 PANTHER PTHR21148:SF26 1 364 2.1E-185 T 14-09-2016 PAJ_RS01555 8d23c368323028815f65b41e640b3c77 382 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 368 1.1E-189 T 14-09-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS01555 8d23c368323028815f65b41e640b3c77 382 SUPERFAMILY SSF51713 2 364 7.72E-164 T 14-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS01555 8d23c368323028815f65b41e640b3c77 382 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 359 58.599 T 14-09-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS01555 8d23c368323028815f65b41e640b3c77 382 PANTHER PTHR21148 1 364 2.1E-185 T 14-09-2016 PAJ_RS01555 8d23c368323028815f65b41e640b3c77 382 Gene3D G3DSA:3.20.20.105 1 366 3.1E-170 T 14-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS01555 8d23c368323028815f65b41e640b3c77 382 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 368 1.4E-179 T 14-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 PANTHER PTHR12383 246 308 1.8E-111 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 PANTHER PTHR12383 3 175 1.8E-111 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 4.5E-26 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 96 4.5E-26 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 264 283 4.5E-26 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 14-09-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 Pfam PF00717 Peptidase S24-like 86 169 9.2E-22 T 14-09-2016 IPR019759 Peptidase S24/S26A/S26B PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 Gene3D G3DSA:2.170.230.10 155 263 1.4E-41 T 14-09-2016 IPR019766 Peptidase S26A, all-beta subdomain PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 SUPERFAMILY SSF51306 78 323 1.62E-80 T 14-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 ProSitePatterns PS00501 Signal peptidases I serine active site. 89 96 - T 14-09-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: REACT_15380 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 Gene3D G3DSA:2.10.109.10 264 310 9.0E-57 T 14-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 Gene3D G3DSA:2.10.109.10 76 154 9.0E-57 T 14-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 Pfam PF10502 Signal peptidase, peptidase S26 259 302 2.7E-7 T 14-09-2016 IPR019533 Peptidase S26 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 66 168 2.1E-26 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 253 304 1.3E-17 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 PANTHER PTHR12383:SF27 246 308 1.8E-111 T 14-09-2016 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 PANTHER PTHR12383:SF27 3 175 1.8E-111 T 14-09-2016 PAJ_RS12045 33ec5890640db3b2ca0be92a77f9cde8 324 ProSitePatterns PS00761 Signal peptidases I signature 3. 269 282 - T 14-09-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 SUPERFAMILY SSF51905 380 607 2.98E-40 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 PANTHER PTHR22893:SF25 1 422 3.5E-230 T 14-09-2016 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 381 642 1.4E-18 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 SUPERFAMILY SSF51395 6 364 1.47E-106 T 14-09-2016 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 Gene3D G3DSA:3.20.20.70 8 364 2.0E-116 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 11 332 1.4E-80 T 14-09-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 Gene3D G3DSA:3.50.50.60 474 626 7.6E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 Gene3D G3DSA:3.50.50.60 365 469 1.6E-24 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 619 635 5.0E-12 T 14-09-2016 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 502 520 5.0E-12 T 14-09-2016 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 382 401 5.0E-12 T 14-09-2016 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 PANTHER PTHR22893 1 422 3.5E-230 T 14-09-2016 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 620 634 4.2E-6 T 14-09-2016 PAJ_RS14945 b15355dbb58cb6c5adf34ddec84a6d65 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 381 403 4.2E-6 T 14-09-2016 PAJ_RS00585 5125f40da8163c103f2d37d02d440aeb 234 Pfam PF03749 Sugar fermentation stimulation protein 13 224 2.9E-74 T 14-09-2016 IPR005224 Sugar fermentation stimulation protein PAJ_RS00585 5125f40da8163c103f2d37d02d440aeb 234 PANTHER PTHR30545:SF2 1 234 1.7E-85 T 14-09-2016 PAJ_RS00585 5125f40da8163c103f2d37d02d440aeb 234 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 234 55.773 T 14-09-2016 IPR005224 Sugar fermentation stimulation protein PAJ_RS00585 5125f40da8163c103f2d37d02d440aeb 234 PANTHER PTHR30545 1 234 1.7E-85 T 14-09-2016 PAJ_RS00585 5125f40da8163c103f2d37d02d440aeb 234 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 5 232 8.0E-80 T 14-09-2016 IPR005224 Sugar fermentation stimulation protein PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 Pfam PF00575 S1 RNA binding domain 648 719 3.0E-23 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 SUPERFAMILY SSF50249 637 721 8.58E-25 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 Gene3D G3DSA:1.10.150.310 498 629 1.0E-45 T 14-09-2016 IPR023097 Tex RuvX-like domain PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 SUPERFAMILY SSF53098 322 468 4.8E-49 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 Pfam PF12836 Helix-hairpin-helix motif 490 554 1.6E-27 T 14-09-2016 PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 PANTHER PTHR10724:SF1 1 730 0.0 T 14-09-2016 PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 SMART SM00316 648 719 2.0E-24 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 SUPERFAMILY SSF158832 4 321 3.79E-120 T 14-09-2016 PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 Gene3D G3DSA:3.30.420.140 327 449 3.3E-49 T 14-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 Gene3D G3DSA:2.40.50.140 632 719 8.4E-29 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 Pfam PF16921 Tex protein YqgF-like domain 327 450 2.4E-49 T 14-09-2016 IPR032639 Tex protein, YqgF-like domain PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 PANTHER PTHR10724 1 730 0.0 T 14-09-2016 PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 Gene3D G3DSA:1.10.10.650 1 109 1.2E-46 T 14-09-2016 IPR023319 Tex-like protein, HTH domain PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 Pfam PF09371 Tex-like protein N-terminal domain 9 192 3.6E-70 T 14-09-2016 IPR018974 Tex-like protein, N-terminal PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 SUPERFAMILY SSF47781 559 631 5.34E-19 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 Gene3D G3DSA:1.10.3500.10 110 322 3.1E-103 T 14-09-2016 IPR023323 Tex-like domain PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 Gene3D G3DSA:1.10.3500.10 450 497 3.1E-103 T 14-09-2016 IPR023323 Tex-like domain PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 SUPERFAMILY SSF47781 469 557 9.34E-28 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PAJ_RS16160 72adc5ccde141d90fb2727d4e04ebfa8 774 SMART SM00732 326 423 3.9E-36 T 14-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 PAJ_RS03930 f0e71250ac6e00f0dcfd6e45eae3dd4f 304 SUPERFAMILY SSF103481 190 287 1.7E-10 T 14-09-2016 PAJ_RS03930 f0e71250ac6e00f0dcfd6e45eae3dd4f 304 PANTHER PTHR12715 11 296 6.7E-44 T 14-09-2016 PAJ_RS03930 f0e71250ac6e00f0dcfd6e45eae3dd4f 304 SUPERFAMILY SSF103481 49 147 6.8E-14 T 14-09-2016 PAJ_RS03930 f0e71250ac6e00f0dcfd6e45eae3dd4f 304 Pfam PF00892 EamA-like transporter family 18 143 3.0E-17 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS03930 f0e71250ac6e00f0dcfd6e45eae3dd4f 304 Pfam PF00892 EamA-like transporter family 156 285 4.1E-12 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS19965 47e1b9ebc18504c9bc56b2492d8cade0 95 Pfam PF01541 GIY-YIG catalytic domain 5 76 1.8E-13 T 14-09-2016 IPR000305 GIY-YIG nuclease superfamily PAJ_RS19965 47e1b9ebc18504c9bc56b2492d8cade0 95 PANTHER PTHR34477 1 88 8.5E-31 T 14-09-2016 PAJ_RS19965 47e1b9ebc18504c9bc56b2492d8cade0 95 PANTHER PTHR34477:SF1 1 88 8.5E-31 T 14-09-2016 PAJ_RS19965 47e1b9ebc18504c9bc56b2492d8cade0 95 SUPERFAMILY SSF82771 5 75 1.44E-10 T 14-09-2016 IPR000305 GIY-YIG nuclease superfamily PAJ_RS16365 5a2b64be25aae0d55e528e0ed6e02ea5 222 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS16365 5a2b64be25aae0d55e528e0ed6e02ea5 222 PANTHER PTHR24220:SF470 3 216 9.4E-126 T 14-09-2016 PAJ_RS16365 5a2b64be25aae0d55e528e0ed6e02ea5 222 SUPERFAMILY SSF52540 1 216 1.91E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16365 5a2b64be25aae0d55e528e0ed6e02ea5 222 Pfam PF00005 ABC transporter 18 165 8.8E-37 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS16365 5a2b64be25aae0d55e528e0ed6e02ea5 222 Gene3D G3DSA:3.40.50.300 1 215 2.0E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16365 5a2b64be25aae0d55e528e0ed6e02ea5 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 7.6E-93 T 14-09-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 PAJ_RS16365 5a2b64be25aae0d55e528e0ed6e02ea5 222 PANTHER PTHR24220 3 216 9.4E-126 T 14-09-2016 PAJ_RS16365 5a2b64be25aae0d55e528e0ed6e02ea5 222 SMART SM00382 27 213 1.9E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01510 2a4b8de786dcc89ab4c5840e5def38a4 306 Gene3D G3DSA:3.40.190.10 120 251 1.7E-30 T 14-09-2016 PAJ_RS01510 2a4b8de786dcc89ab4c5840e5def38a4 306 Gene3D G3DSA:3.40.190.10 24 119 9.8E-13 T 14-09-2016 PAJ_RS01510 2a4b8de786dcc89ab4c5840e5def38a4 306 Pfam PF12849 PBP superfamily domain 25 278 7.5E-27 T 14-09-2016 IPR024370 PBP domain PAJ_RS01510 2a4b8de786dcc89ab4c5840e5def38a4 306 PANTHER PTHR30570 22 306 8.5E-111 T 14-09-2016 PAJ_RS01510 2a4b8de786dcc89ab4c5840e5def38a4 306 SUPERFAMILY SSF53850 20 303 2.37E-67 T 14-09-2016 PAJ_RS01510 2a4b8de786dcc89ab4c5840e5def38a4 306 PANTHER PTHR30570:SF5 22 306 8.5E-111 T 14-09-2016 PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 PANTHER PTHR18964:SF141 44 168 2.5E-46 T 14-09-2016 PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 ProSitePatterns PS01117 MarR-type HTH domain signature. 87 121 - T 14-09-2016 IPR023187 Transcriptional regulator MarR-type, conserved site PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 SMART SM00347 46 148 3.6E-29 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 PANTHER PTHR18964 44 168 2.5E-46 T 14-09-2016 PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 SUPERFAMILY SSF46785 20 166 8.59E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 Pfam PF01047 MarR family 53 112 3.3E-15 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 Gene3D G3DSA:1.10.10.10 25 164 5.8E-33 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 8.2E-23 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 8.2E-23 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 8.2E-23 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS12540 a83cdd440ce30eefe58f0bfc1946cb9f 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 8.2E-23 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 8.5E-8 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 8.5E-8 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 SUPERFAMILY SSF46785 3 61 2.28E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 Gene3D G3DSA:1.10.10.10 3 54 4.9E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 PANTHER PTHR30154:SF17 3 151 6.8E-95 T 14-09-2016 PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 49 8.7E-16 T 14-09-2016 PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 SMART SM00344 3 111 6.0E-33 T 14-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 Gene3D G3DSA:3.30.70.920 55 139 3.4E-29 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 SUPERFAMILY SSF54909 64 151 6.7E-20 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 PANTHER PTHR30154 3 151 6.8E-95 T 14-09-2016 PAJ_RS01760 9cadacab352ae590a0eccab4087ec313 153 Pfam PF01037 Lrp/AsnC ligand binding domain 70 142 4.2E-20 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 PANTHER PTHR18866 1105 1205 1.8E-297 T 14-09-2016 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 PANTHER PTHR18866 1 538 1.8E-297 T 14-09-2016 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Pfam PF02626 Allophanate hydrolase subunit 2 472 751 1.1E-88 T 14-09-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 SUPERFAMILY SSF51246 330 443 9.94E-38 T 14-09-2016 IPR011054 Rudiment single hybrid motif PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 PANTHER PTHR18866:SF91 1105 1205 1.8E-297 T 14-09-2016 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 PANTHER PTHR18866:SF91 1 538 1.8E-297 T 14-09-2016 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 SUPERFAMILY SSF50891 925 1056 3.03E-25 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 320 3.7E-61 T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Gene3D G3DSA:3.30.1490.20 130 200 4.1E-20 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Pfam PF02785 Biotin carboxylase C-terminal domain 336 440 3.6E-36 T 14-09-2016 IPR005482 Biotin carboxylase, C-terminal PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 SMART SM00797 471 768 4.4E-170 T 14-09-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Gene3D G3DSA:3.30.470.20 202 441 1.1E-91 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1205 0.0 T 14-09-2016 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703|UniPathway: UPA00258|UniPathway: UPA00258 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 SMART SM00796 808 1041 3.2E-103 T 14-09-2016 IPR003833 Carboxyltransferase domain, subdomain C and D PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Gene3D G3DSA:2.40.100.10 632 765 1.3E-34 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Gene3D G3DSA:2.40.100.10 925 1064 2.3E-43 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 SUPERFAMILY SSF51230 1125 1205 6.81E-22 T 14-09-2016 IPR011053 Single hybrid motif PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1161 1178 - T 14-09-2016 IPR001882 Biotin-binding site PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Gene3D G3DSA:3.30.1360.40 810 888 1.1E-24 T 14-09-2016 IPR024946 Arginine repressor C-terminal-like domain PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 SUPERFAMILY SSF52440 1 110 2.59E-44 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 SUPERFAMILY SSF50891 632 758 1.18E-33 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 449 773 1.2E-98 T 14-09-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 SMART SM00878 336 440 1.1E-57 T 14-09-2016 IPR005482 Biotin carboxylase, C-terminal PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 SUPERFAMILY SSF160467 810 902 1.83E-19 T 14-09-2016 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 SUPERFAMILY SSF56059 83 352 8.13E-65 T 14-09-2016 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Pfam PF00364 Biotin-requiring enzyme 1145 1202 4.5E-16 T 14-09-2016 IPR000089 Biotin/lipoyl attachment PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Gene3D G3DSA:3.40.50.20 1 129 8.4E-47 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.0E-42 T 14-09-2016 IPR005481 Biotin carboxylase-like, N-terminal domain PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Gene3D G3DSA:2.40.50.100 1131 1204 3.8E-25 T 14-09-2016 PAJ_RS20885 e95ec55040010aee2c9477f0edabc8b5 1205 Pfam PF02682 Allophanate hydrolase subunit 1 810 1026 1.8E-45 T 14-09-2016 IPR003833 Carboxyltransferase domain, subdomain C and D PAJ_RS11025 dffbd96f9f18c29255d659fca97f42aa 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 285 1.4E-13 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11025 dffbd96f9f18c29255d659fca97f42aa 303 Gene3D G3DSA:1.10.3720.10 66 290 1.3E-40 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11025 dffbd96f9f18c29255d659fca97f42aa 303 PANTHER PTHR30193:SF16 13 300 1.8E-70 T 14-09-2016 PAJ_RS11025 dffbd96f9f18c29255d659fca97f42aa 303 Gene3D G3DSA:1.20.58.370 10 44 2.1E-5 T 14-09-2016 PAJ_RS11025 dffbd96f9f18c29255d659fca97f42aa 303 SUPERFAMILY SSF161098 55 284 5.1E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11025 dffbd96f9f18c29255d659fca97f42aa 303 PANTHER PTHR30193 13 300 1.8E-70 T 14-09-2016 PAJ_RS11025 dffbd96f9f18c29255d659fca97f42aa 303 SUPERFAMILY SSF160964 10 46 4.71E-7 T 14-09-2016 PAJ_RS09605 e7343803d465485d85cb4912f910d92e 465 SUPERFAMILY SSF56176 21 195 6.54E-25 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS09605 e7343803d465485d85cb4912f910d92e 465 SUPERFAMILY SSF55103 183 451 7.85E-6 T 14-09-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 PAJ_RS09605 e7343803d465485d85cb4912f910d92e 465 Pfam PF04030 D-arabinono-1,4-lactone oxidase 189 456 5.7E-45 T 14-09-2016 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 PAJ_RS09605 e7343803d465485d85cb4912f910d92e 465 PIRSF PIRSF000136 15 464 1.2E-50 T 14-09-2016 IPR010031 L-gulonolactone/D-arabinono-1,4-lactone oxidase GO:0016899|GO:0055114 PAJ_RS09605 e7343803d465485d85cb4912f910d92e 465 PANTHER PTHR13878 35 459 2.2E-58 T 14-09-2016 PAJ_RS09605 e7343803d465485d85cb4912f910d92e 465 Pfam PF01565 FAD binding domain 37 167 6.9E-15 T 14-09-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 PAJ_RS09605 e7343803d465485d85cb4912f910d92e 465 Gene3D G3DSA:3.30.465.10 91 195 1.5E-19 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS09605 e7343803d465485d85cb4912f910d92e 465 PANTHER PTHR13878:SF63 35 459 2.2E-58 T 14-09-2016 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 14 756 2.2E-281 T 14-09-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 SUPERFAMILY SSF53706 48 630 1.83E-140 T 14-09-2016 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 Gene3D G3DSA:3.40.228.10 183 394 6.5E-51 T 14-09-2016 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 Pfam PF01568 Molydopterin dinucleotide binding domain 644 752 9.3E-12 T 14-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 PIRSF PIRSF000144 1 762 0.0 T 14-09-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 PANTHER PTHR11615 271 756 1.2E-252 T 14-09-2016 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 Gene3D G3DSA:2.40.40.20 637 756 4.0E-13 T 14-09-2016 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 PANTHER PTHR11615 36 252 1.2E-252 T 14-09-2016 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 SUPERFAMILY SSF50692 634 759 1.27E-19 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 PANTHER PTHR11615:SF114 36 252 1.2E-252 T 14-09-2016 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 PANTHER PTHR11615:SF114 271 756 1.2E-252 T 14-09-2016 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 Pfam PF00384 Molybdopterin oxidoreductase 109 494 1.7E-21 T 14-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 Gene3D G3DSA:3.40.50.740 109 182 6.9E-57 T 14-09-2016 PAJ_RS07550 3aa28956d40d19ebd7ed0cc9a25da5a1 767 Gene3D G3DSA:3.40.50.740 395 626 6.9E-57 T 14-09-2016 PAJ_RS14205 a4512881d0ae976660e8ff02b175aa04 168 PANTHER PTHR11431:SF4 3 164 9.4E-45 T 14-09-2016 PAJ_RS14205 a4512881d0ae976660e8ff02b175aa04 168 Gene3D G3DSA:1.20.1260.10 1 162 1.7E-58 T 14-09-2016 IPR012347 Ferritin-related PAJ_RS14205 a4512881d0ae976660e8ff02b175aa04 168 PANTHER PTHR11431 3 164 9.4E-45 T 14-09-2016 IPR001519 Ferritin GO:0006826|GO:0006879|GO:0008199 PAJ_RS14205 a4512881d0ae976660e8ff02b175aa04 168 Pfam PF00210 Ferritin-like domain 9 143 2.1E-38 T 14-09-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 PAJ_RS14205 a4512881d0ae976660e8ff02b175aa04 168 SUPERFAMILY SSF47240 1 159 4.38E-55 T 14-09-2016 IPR009078 Ferritin-like superfamily PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 Gene3D G3DSA:1.20.59.10 3 83 2.3E-23 T 14-09-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 Gene3D G3DSA:3.40.50.720 84 247 8.9E-48 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 SUPERFAMILY SSF48600 2 87 4.4E-23 T 14-09-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 Pfam PF01817 Chorismate mutase type II 9 86 3.3E-20 T 14-09-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 SUPERFAMILY SSF51735 91 238 4.72E-39 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 2.0E-44 T 14-09-2016 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626|UniPathway: UPA00120|UniPathway: UPA00122 PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 PANTHER PTHR21363 88 370 1.2E-79 T 14-09-2016 PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 SUPERFAMILY SSF48179 242 366 4.76E-43 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 PIRSF PIRSF001499 1 373 7.3E-180 T 14-09-2016 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626|UniPathway: UPA00120|UniPathway: UPA00122 PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 Pfam PF02153 Prephenate dehydrogenase 139 343 4.3E-30 T 14-09-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 SMART SM00830 9 89 4.3E-30 T 14-09-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 Gene3D G3DSA:1.10.3660.10 248 372 5.5E-57 T 14-09-2016 PAJ_RS12660 4c0a8be0d6b78d3ac0336c942aac381d 373 PANTHER PTHR21363:SF0 88 370 1.2E-79 T 14-09-2016 PAJ_RS19735 a3474d2f9469d69d5818e120fe218a9f 159 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 12 154 4.7E-37 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS19735 a3474d2f9469d69d5818e120fe218a9f 159 Gene3D G3DSA:3.40.930.10 5 157 1.1E-46 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS19735 a3474d2f9469d69d5818e120fe218a9f 159 SUPERFAMILY SSF55804 8 154 1.28E-40 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS19735 a3474d2f9469d69d5818e120fe218a9f 159 PANTHER PTHR30505 2 159 1.9E-81 T 14-09-2016 PAJ_RS19735 a3474d2f9469d69d5818e120fe218a9f 159 PANTHER PTHR30505:SF6 2 159 1.9E-81 T 14-09-2016 PAJ_RS19735 a3474d2f9469d69d5818e120fe218a9f 159 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 57 73 - T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS19735 a3474d2f9469d69d5818e120fe218a9f 159 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 9 154 8.5E-60 T 14-09-2016 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS01000 b38d3e41830ba53c730f19b919f30423 60 Pfam PF13318 Protein of unknown function (DUF4089) 9 58 2.5E-19 T 14-09-2016 IPR025148 Protein of unknown function DUF4089 PAJ_RS15295 a8c4673cf66eaa10ab2d93e4c38ccbe6 206 PANTHER PTHR10516 86 205 1.3E-63 T 14-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PAJ_RS15295 a8c4673cf66eaa10ab2d93e4c38ccbe6 206 PANTHER PTHR10516 14 67 1.3E-63 T 14-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PAJ_RS15295 a8c4673cf66eaa10ab2d93e4c38ccbe6 206 Gene3D G3DSA:1.10.287.460 2 88 9.9E-23 T 14-09-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 PAJ_RS15295 a8c4673cf66eaa10ab2d93e4c38ccbe6 206 Gene3D G3DSA:3.10.50.40 89 205 4.7E-48 T 14-09-2016 PAJ_RS15295 a8c4673cf66eaa10ab2d93e4c38ccbe6 206 PANTHER PTHR10516:SF320 86 205 1.3E-63 T 14-09-2016 PAJ_RS15295 a8c4673cf66eaa10ab2d93e4c38ccbe6 206 PANTHER PTHR10516:SF320 14 67 1.3E-63 T 14-09-2016 PAJ_RS15295 a8c4673cf66eaa10ab2d93e4c38ccbe6 206 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 203 1.7E-26 T 14-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PAJ_RS15295 a8c4673cf66eaa10ab2d93e4c38ccbe6 206 SUPERFAMILY SSF54534 12 205 2.95E-53 T 14-09-2016 PAJ_RS15295 a8c4673cf66eaa10ab2d93e4c38ccbe6 206 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 3 108 3.7E-21 T 14-09-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 PAJ_RS12905 8f90ac820e8e904c2abdcd0a70045342 245 SUPERFAMILY SSF161098 13 200 8.22E-43 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12905 8f90ac820e8e904c2abdcd0a70045342 245 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 109 3.8E-30 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS12905 8f90ac820e8e904c2abdcd0a70045342 245 PANTHER PTHR30614 1 220 5.4E-78 T 14-09-2016 PAJ_RS12905 8f90ac820e8e904c2abdcd0a70045342 245 Gene3D G3DSA:1.10.3720.10 11 214 7.8E-45 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12905 8f90ac820e8e904c2abdcd0a70045342 245 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 214 1.1E-19 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 Pfam PF00108 Thiolase, N-terminal domain 5 267 2.3E-68 T 14-09-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 400 7.9E-211 T 14-09-2016 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 PANTHER PTHR18919:SF91 1 400 2.6E-221 T 14-09-2016 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 SUPERFAMILY SSF53901 4 275 6.07E-73 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 PIRSF PIRSF000429 1 400 9.0E-123 T 14-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 398 1.9E-129 T 14-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 14-09-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 ProSitePatterns PS00099 Thiolases active site. 381 394 - T 14-09-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 PANTHER PTHR18919 1 400 2.6E-221 T 14-09-2016 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 Gene3D G3DSA:3.40.47.10 282 399 1.1E-56 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 Gene3D G3DSA:3.40.47.10 152 199 1.1E-56 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 Gene3D G3DSA:3.40.47.10 200 281 5.4E-63 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 Gene3D G3DSA:3.40.47.10 4 125 5.4E-63 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 SUPERFAMILY SSF53901 276 399 1.98E-44 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 Pfam PF02803 Thiolase, C-terminal domain 276 399 2.5E-43 T 14-09-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PAJ_RS14420 719cdc9f19eefcc8d592cb541d230c01 400 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 14-09-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 PAJ_RS10340 330f8e923e1905bb5cdf08791a2e13da 94 Pfam PF01386 Ribosomal L25p family 4 91 5.0E-24 T 14-09-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 PAJ_RS10340 330f8e923e1905bb5cdf08791a2e13da 94 Gene3D G3DSA:2.40.240.10 1 93 3.1E-34 T 14-09-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 PAJ_RS10340 330f8e923e1905bb5cdf08791a2e13da 94 SUPERFAMILY SSF50715 1 93 1.92E-30 T 14-09-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 PAJ_RS10340 330f8e923e1905bb5cdf08791a2e13da 94 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 2 94 28.087 T 14-09-2016 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 PAJ_RS10340 330f8e923e1905bb5cdf08791a2e13da 94 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 9 93 1.0E-36 T 14-09-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 PAJ_RS10340 330f8e923e1905bb5cdf08791a2e13da 94 PANTHER PTHR33284 1 94 9.5E-41 T 14-09-2016 PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 PRINTS PR00990 Ribokinase signature 220 231 2.0E-37 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 PRINTS PR00990 Ribokinase signature 176 191 2.0E-37 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 PRINTS PR00990 Ribokinase signature 9 30 2.0E-37 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 PRINTS PR00990 Ribokinase signature 108 121 2.0E-37 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 PRINTS PR00990 Ribokinase signature 36 55 2.0E-37 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 PANTHER PTHR10584:SF166 1 307 2.0E-105 T 14-09-2016 PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 8 302 7.5E-111 T 14-09-2016 IPR011877 Ribokinase, bacterial type GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|UniPathway: UPA00916 PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 PANTHER PTHR10584 1 307 2.0E-105 T 14-09-2016 PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 Gene3D G3DSA:3.40.1190.20 5 307 3.4E-97 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 Pfam PF00294 pfkB family carbohydrate kinase 5 297 2.0E-77 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS17540 224b690491a1ec0843afd8c5985112fe 309 SUPERFAMILY SSF53613 5 305 8.26E-85 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 PANTHER PTHR11373 25 142 7.4E-80 T 14-09-2016 PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 PANTHER PTHR11373 174 496 7.4E-80 T 14-09-2016 PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 Gene3D G3DSA:1.10.3550.10 123 161 1.8E-35 T 14-09-2016 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal domain PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 Gene3D G3DSA:1.10.3550.10 382 495 1.8E-35 T 14-09-2016 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal domain PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 SUPERFAMILY SSF109604 243 423 2.67E-61 T 14-09-2016 PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 SUPERFAMILY SSF109604 31 134 2.67E-61 T 14-09-2016 PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 SUPERFAMILY SSF109604 174 207 2.67E-61 T 14-09-2016 PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 SUPERFAMILY SSF109604 475 493 2.67E-61 T 14-09-2016 PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 SMART SM00471 62 274 3.6E-10 T 14-09-2016 IPR003607 HD/PDEase domain PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 PANTHER PTHR11373:SF29 25 142 7.4E-80 T 14-09-2016 PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 PANTHER PTHR11373:SF29 174 496 7.4E-80 T 14-09-2016 PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 1 496 50.138 T 14-09-2016 IPR020779 Deoxyguanosinetriphosphate triphosphohydrolase, proteobacteria GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 Gene3D G3DSA:1.10.3210.10 4 122 3.4E-63 T 14-09-2016 IPR006674 HD domain PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 Gene3D G3DSA:1.10.3210.10 175 260 3.4E-63 T 14-09-2016 IPR006674 HD domain PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 Gene3D G3DSA:1.10.3410.10 261 381 5.3E-30 T 14-09-2016 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 30 494 1.3E-121 T 14-09-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 Pfam PF01966 HD domain 66 137 4.6E-10 T 14-09-2016 IPR006674 HD domain PAJ_RS00650 9e6bb9fcb606525220777d41ee48659a 496 Pfam PF13286 Phosphohydrolase-associated domain 468 491 6.3E-5 T 14-09-2016 IPR026875 Phosphohydrolase-associated domain PAJ_RS11520 b58f2e9aa1a33e57b3cc0ebfceab1134 122 Pfam PF03960 ArsC family 9 115 2.4E-14 T 14-09-2016 IPR006660 Arsenate reductase-like PAJ_RS11520 b58f2e9aa1a33e57b3cc0ebfceab1134 122 PANTHER PTHR30041 6 120 7.8E-33 T 14-09-2016 PAJ_RS11520 b58f2e9aa1a33e57b3cc0ebfceab1134 122 PANTHER PTHR30041:SF3 6 120 7.8E-33 T 14-09-2016 PAJ_RS11520 b58f2e9aa1a33e57b3cc0ebfceab1134 122 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 7 116 2.7E-30 T 14-09-2016 IPR006504 Transcriptional regulator Spx/MgsR PAJ_RS11520 b58f2e9aa1a33e57b3cc0ebfceab1134 122 Gene3D G3DSA:3.40.30.10 6 118 5.0E-38 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS11520 b58f2e9aa1a33e57b3cc0ebfceab1134 122 SUPERFAMILY SSF52833 6 118 7.99E-29 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS15265 032b38b082ed3d7fe6b84e7cb7f4422a 579 PANTHER PTHR12815 3 579 5.1E-258 T 14-09-2016 PAJ_RS15265 032b38b082ed3d7fe6b84e7cb7f4422a 579 Gene3D G3DSA:2.40.160.50 310 576 1.7E-23 T 14-09-2016 PAJ_RS15265 032b38b082ed3d7fe6b84e7cb7f4422a 579 Pfam PF07244 Surface antigen variable number repeat 191 255 5.9E-8 T 14-09-2016 IPR010827 Surface antigen variable number GO:0019867 PAJ_RS15265 032b38b082ed3d7fe6b84e7cb7f4422a 579 Pfam PF01103 Surface antigen 282 576 1.6E-34 T 14-09-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 PAJ_RS15265 032b38b082ed3d7fe6b84e7cb7f4422a 579 PANTHER PTHR12815:SF12 3 579 5.1E-258 T 14-09-2016 PAJ_RS07500 6d559c676a3faf1f043a8a9f41f5b2c1 150 Gene3D G3DSA:3.40.630.30 10 127 2.7E-16 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS07500 6d559c676a3faf1f043a8a9f41f5b2c1 150 SUPERFAMILY SSF55729 11 145 1.92E-16 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS07500 6d559c676a3faf1f043a8a9f41f5b2c1 150 Pfam PF13508 Acetyltransferase (GNAT) domain 44 114 3.7E-7 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 PANTHER PTHR10584 1 305 1.9E-91 T 14-09-2016 PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 SUPERFAMILY SSF53613 4 304 6.39E-76 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 Gene3D G3DSA:3.40.1190.20 2 307 3.4E-83 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 Pfam PF00294 pfkB family carbohydrate kinase 4 295 4.6E-62 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 PRINTS PR00990 Ribokinase signature 34 53 6.7E-28 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 PRINTS PR00990 Ribokinase signature 7 28 6.7E-28 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 PRINTS PR00990 Ribokinase signature 107 120 6.7E-28 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 PRINTS PR00990 Ribokinase signature 175 190 6.7E-28 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 PRINTS PR00990 Ribokinase signature 219 230 6.7E-28 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS11485 bbb0433fd83fa6ab97b92dd4dea09f4e 319 PANTHER PTHR10584:SF166 1 305 1.9E-91 T 14-09-2016 PAJ_RS07940 882dfa0d384d6c25da673c61d12b94a5 292 Gene3D G3DSA:2.70.98.10 10 285 1.5E-85 T 14-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PAJ_RS07940 882dfa0d384d6c25da673c61d12b94a5 292 SUPERFAMILY SSF74650 7 273 1.44E-68 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS07940 882dfa0d384d6c25da673c61d12b94a5 292 PANTHER PTHR11122:SF14 1 292 9.8E-117 T 14-09-2016 PAJ_RS07940 882dfa0d384d6c25da673c61d12b94a5 292 PIRSF PIRSF016020 7 292 4.7E-53 T 14-09-2016 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 PAJ_RS07940 882dfa0d384d6c25da673c61d12b94a5 292 PANTHER PTHR11122 1 292 9.8E-117 T 14-09-2016 PAJ_RS07940 882dfa0d384d6c25da673c61d12b94a5 292 Pfam PF01263 Aldose 1-epimerase 28 270 3.7E-44 T 14-09-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 PAJ_RS15770 15f893f9f33f7fa1fc0f1ed191f5f48d 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 1.7E-29 T 14-09-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 PAJ_RS15770 15f893f9f33f7fa1fc0f1ed191f5f48d 166 Gene3D G3DSA:3.30.230.10 78 159 2.5E-33 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS15770 15f893f9f33f7fa1fc0f1ed191f5f48d 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.937 T 14-09-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 PAJ_RS15770 15f893f9f33f7fa1fc0f1ed191f5f48d 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 2.9E-30 T 14-09-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 PAJ_RS15770 15f893f9f33f7fa1fc0f1ed191f5f48d 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 14-09-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site PAJ_RS15770 15f893f9f33f7fa1fc0f1ed191f5f48d 166 PANTHER PTHR13718 10 164 3.5E-82 T 14-09-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15770 15f893f9f33f7fa1fc0f1ed191f5f48d 166 Gene3D G3DSA:3.30.160.20 10 72 9.8E-31 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain PAJ_RS15770 15f893f9f33f7fa1fc0f1ed191f5f48d 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 1.3E-70 T 14-09-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 PAJ_RS15770 15f893f9f33f7fa1fc0f1ed191f5f48d 166 SUPERFAMILY SSF54768 9 76 6.59E-24 T 14-09-2016 PAJ_RS15770 15f893f9f33f7fa1fc0f1ed191f5f48d 166 SUPERFAMILY SSF54211 79 159 4.3E-27 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 Gene3D G3DSA:3.30.830.10 508 731 3.0E-54 T 14-09-2016 IPR011237 Peptidase M16 domain GO:0046872 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 Gene3D G3DSA:3.30.830.10 30 269 2.6E-61 T 14-09-2016 IPR011237 Peptidase M16 domain GO:0046872 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 Pfam PF16187 Middle or third domain of peptidase_M16 401 675 7.3E-53 T 14-09-2016 IPR032632 Peptidase M16, middle/third domain PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 Pfam PF00675 Insulinase (Peptidase family M16) 56 192 4.5E-33 T 14-09-2016 IPR011765 Peptidase M16, N-terminal PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 SUPERFAMILY SSF63411 505 730 8.62E-41 T 14-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 76 99 - T 14-09-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 SUPERFAMILY SSF63411 31 263 9.43E-51 T 14-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 Gene3D G3DSA:3.30.830.10 275 507 1.3E-65 T 14-09-2016 IPR011237 Peptidase M16 domain GO:0046872 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 PANTHER PTHR11851:SF135 412 936 0.0 T 14-09-2016 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 PANTHER PTHR11851:SF135 8 395 0.0 T 14-09-2016 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 SUPERFAMILY SSF63411 266 502 6.11E-67 T 14-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 SUPERFAMILY SSF63411 752 958 1.23E-41 T 14-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 Pfam PF05193 Peptidase M16 inactive domain 684 859 5.5E-8 T 14-09-2016 IPR007863 Peptidase M16, C-terminal PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 Pfam PF05193 Peptidase M16 inactive domain 217 393 2.3E-20 T 14-09-2016 IPR007863 Peptidase M16, C-terminal PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 Gene3D G3DSA:3.30.830.10 732 960 1.7E-50 T 14-09-2016 IPR011237 Peptidase M16 domain GO:0046872 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 PANTHER PTHR11851 412 936 0.0 T 14-09-2016 PAJ_RS13155 b0aaecaa7ac9bccbe040284a2ea549f9 963 PANTHER PTHR11851 8 395 0.0 T 14-09-2016 PAJ_RS05020 0510e0d2cb701e871c288191737d69c9 159 Gene3D G3DSA:3.40.630.30 18 154 4.5E-19 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05020 0510e0d2cb701e871c288191737d69c9 159 PANTHER PTHR23091 9 154 1.1E-14 T 14-09-2016 PAJ_RS05020 0510e0d2cb701e871c288191737d69c9 159 Pfam PF00583 Acetyltransferase (GNAT) family 74 134 3.5E-9 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS05020 0510e0d2cb701e871c288191737d69c9 159 SUPERFAMILY SSF55729 9 154 1.41E-20 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS17330 b1c8fe135ec6a9f9ca0b8f2154077514 394 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 393 1.6E-56 T 14-09-2016 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS17330 b1c8fe135ec6a9f9ca0b8f2154077514 394 PANTHER PTHR10590 4 394 4.5E-216 T 14-09-2016 IPR008276 Concentrative nucleoside transporter GO:0005337|GO:0016020|GO:1901642 Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS17330 b1c8fe135ec6a9f9ca0b8f2154077514 394 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 9 82 1.4E-17 T 14-09-2016 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS17330 b1c8fe135ec6a9f9ca0b8f2154077514 394 Pfam PF07670 Nucleoside recognition 92 190 2.9E-7 T 14-09-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS17330 b1c8fe135ec6a9f9ca0b8f2154077514 394 PANTHER PTHR10590:SF13 4 394 4.5E-216 T 14-09-2016 PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 6.2E-23 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 6.2E-23 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 6.2E-23 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 SUPERFAMILY SSF46785 12 70 1.05E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 14-09-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 SMART SM00344 12 121 5.4E-52 T 14-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 SUPERFAMILY SSF54909 74 157 1.88E-21 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 PANTHER PTHR30154 4 162 1.5E-105 T 14-09-2016 PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 Gene3D G3DSA:3.30.70.920 65 161 2.1E-32 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 58 5.9E-21 T 14-09-2016 PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 PANTHER PTHR30154:SF0 4 162 1.5E-105 T 14-09-2016 PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 1.2E-23 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS03570 2e1182b777d0d0f6c63332df9ff95028 164 Gene3D G3DSA:1.10.10.10 13 63 5.7E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20905 c4ad59555409674c58c97a141bcde463 172 PANTHER PTHR34699 1 172 1.0E-90 T 14-09-2016 PAJ_RS20905 c4ad59555409674c58c97a141bcde463 172 Gene3D G3DSA:3.90.950.10 2 168 2.9E-60 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PAJ_RS20905 c4ad59555409674c58c97a141bcde463 172 Hamap MF_00648 Non-canonical purine NTP phosphatase. 2 171 28.654 T 14-09-2016 IPR002786 Non-canonical purine NTP phosphatase PAJ_RS20905 c4ad59555409674c58c97a141bcde463 172 Pfam PF01931 Protein of unknown function DUF84 7 165 8.5E-53 T 14-09-2016 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 PAJ_RS20905 c4ad59555409674c58c97a141bcde463 172 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 7 167 1.3E-50 T 14-09-2016 IPR002786 Non-canonical purine NTP phosphatase PAJ_RS20905 c4ad59555409674c58c97a141bcde463 172 SUPERFAMILY SSF52972 1 168 2.44E-56 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PAJ_RS20905 c4ad59555409674c58c97a141bcde463 172 PANTHER PTHR34699:SF3 1 172 1.0E-90 T 14-09-2016 PAJ_RS15275 1d801fa51cc98c5957ac731c3fd41f58 68 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 63 2.0E-27 T 14-09-2016 IPR009491 Protein of unknown function DUF1107 PAJ_RS15275 1d801fa51cc98c5957ac731c3fd41f58 68 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 8.7E-31 T 14-09-2016 IPR009491 Protein of unknown function DUF1107 PAJ_RS15275 1d801fa51cc98c5957ac731c3fd41f58 68 Gene3D G3DSA:3.30.1910.10 1 64 1.7E-37 T 14-09-2016 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 537 587 1.6E-10 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 Pfam PF00005 ABC transporter 33 195 8.0E-25 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 Pfam PF00005 ABC transporter 337 486 2.8E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 PANTHER PTHR24220:SF442 336 446 7.4E-190 T 14-09-2016 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 PANTHER PTHR24220:SF442 14 307 7.4E-190 T 14-09-2016 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 SMART SM00382 345 537 9.8E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 SMART SM00382 41 245 2.8E-17 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 Gene3D G3DSA:3.40.50.300 308 561 3.9E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 Gene3D G3DSA:3.40.50.300 11 269 2.3E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 539 572 6.5E-9 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 247 278 0.002 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 SUPERFAMILY SSF52540 12 267 2.27E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 PANTHER PTHR24220 336 446 7.4E-190 T 14-09-2016 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 PANTHER PTHR24220 14 307 7.4E-190 T 14-09-2016 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 ProSitePatterns PS00211 ABC transporters family signature. 460 474 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03350 f43491036d15e9f1d8a13bf7a01d8738 616 SUPERFAMILY SSF52540 309 559 1.1E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11020 a50f51b333e658d252aecde5ef269eac 354 PANTHER PTHR32243 13 65 6.6E-63 T 14-09-2016 PAJ_RS11020 a50f51b333e658d252aecde5ef269eac 354 PANTHER PTHR32243 117 354 6.6E-63 T 14-09-2016 PAJ_RS11020 a50f51b333e658d252aecde5ef269eac 354 PANTHER PTHR32243:SF4 13 65 6.6E-63 T 14-09-2016 PAJ_RS11020 a50f51b333e658d252aecde5ef269eac 354 PANTHER PTHR32243:SF4 117 354 6.6E-63 T 14-09-2016 PAJ_RS11020 a50f51b333e658d252aecde5ef269eac 354 SUPERFAMILY SSF161098 94 354 3.27E-52 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11020 a50f51b333e658d252aecde5ef269eac 354 Gene3D G3DSA:1.10.3720.10 28 69 1.9E-43 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11020 a50f51b333e658d252aecde5ef269eac 354 Gene3D G3DSA:1.10.3720.10 115 342 1.9E-43 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS06910 5b1fb94cad7f8483759029c211b03216 237 Pfam PF02308 MgtC family 12 130 7.3E-35 T 14-09-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PAJ_RS06910 5b1fb94cad7f8483759029c211b03216 237 PRINTS PR01837 MgtC/SapB protein signature 86 110 2.0E-43 T 14-09-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PAJ_RS06910 5b1fb94cad7f8483759029c211b03216 237 PRINTS PR01837 MgtC/SapB protein signature 13 32 2.0E-43 T 14-09-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PAJ_RS06910 5b1fb94cad7f8483759029c211b03216 237 PRINTS PR01837 MgtC/SapB protein signature 32 50 2.0E-43 T 14-09-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PAJ_RS06910 5b1fb94cad7f8483759029c211b03216 237 PRINTS PR01837 MgtC/SapB protein signature 59 81 2.0E-43 T 14-09-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PAJ_RS06910 5b1fb94cad7f8483759029c211b03216 237 PANTHER PTHR33778 1 228 8.9E-108 T 14-09-2016 PAJ_RS06910 5b1fb94cad7f8483759029c211b03216 237 PANTHER PTHR33778:SF3 1 228 8.9E-108 T 14-09-2016 PAJ_RS18290 18f17846a1db0588ff7321fb5ca65496 376 PANTHER PTHR18964 1 371 1.8E-205 T 14-09-2016 PAJ_RS18290 18f17846a1db0588ff7321fb5ca65496 376 Gene3D G3DSA:3.40.50.2000 211 370 8.0E-66 T 14-09-2016 PAJ_RS18290 18f17846a1db0588ff7321fb5ca65496 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 372 5.8E-167 T 14-09-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 PAJ_RS18290 18f17846a1db0588ff7321fb5ca65496 376 Hamap MF_02028 UDP-N-acetylglucosamine 2-epimerase [wecB]. 16 374 65.446 T 14-09-2016 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB GO:0008761|GO:0009246 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335|UniPathway: UPA00566 PAJ_RS18290 18f17846a1db0588ff7321fb5ca65496 376 PANTHER PTHR18964:SF2 1 371 1.8E-205 T 14-09-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 PAJ_RS18290 18f17846a1db0588ff7321fb5ca65496 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 21 370 2.7E-124 T 14-09-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain PAJ_RS18290 18f17846a1db0588ff7321fb5ca65496 376 SUPERFAMILY SSF53756 2 371 8.85E-139 T 14-09-2016 PAJ_RS18290 18f17846a1db0588ff7321fb5ca65496 376 Gene3D G3DSA:3.40.50.2000 2 210 1.4E-86 T 14-09-2016 PAJ_RS00660 b85a307371fe8baf200ef466798caabb 385 PANTHER PTHR33744 1 384 3.0E-171 T 14-09-2016 PAJ_RS00660 b85a307371fe8baf200ef466798caabb 385 Gene3D G3DSA:1.10.10.60 339 358 2.4E-4 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS00660 b85a307371fe8baf200ef466798caabb 385 PANTHER PTHR33744:SF1 1 384 3.0E-171 T 14-09-2016 PAJ_RS00660 b85a307371fe8baf200ef466798caabb 385 Pfam PF13556 PucR C-terminal helix-turn-helix domain 323 381 3.1E-21 T 14-09-2016 IPR025736 PucR C-terminal helix-turn-helix domain PAJ_RS00660 b85a307371fe8baf200ef466798caabb 385 Pfam PF05651 Putative sugar diacid recognition 6 138 2.1E-48 T 14-09-2016 IPR008599 Putative sugar diacid recognition PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 SUPERFAMILY SSF52540 8 233 3.38E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 PANTHER PTHR24220 11 381 2.4E-113 T 14-09-2016 PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 SMART SM00382 283 486 2.4 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 SMART SM00382 34 224 2.6E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 PANTHER PTHR24220:SF416 11 381 2.4E-113 T 14-09-2016 PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 Gene3D G3DSA:3.40.50.300 277 488 2.9E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 Gene3D G3DSA:3.40.50.300 6 236 7.4E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 SUPERFAMILY SSF52540 275 487 6.85E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 Pfam PF00005 ABC transporter 26 176 1.3E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS19470 f0b72b9ff9c5050d2e5ca9d63a763215 508 Pfam PF00005 ABC transporter 276 430 1.4E-16 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS12545 f8222b20ae227baaf8de81fa9a355b3e 390 PANTHER PTHR30386:SF6 1 376 2.3E-184 T 14-09-2016 PAJ_RS12545 f8222b20ae227baaf8de81fa9a355b3e 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 289 1.1E-13 T 14-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PAJ_RS12545 f8222b20ae227baaf8de81fa9a355b3e 390 TIGRFAM TIGR00998 8a0101: efflux pump membrane protein 20 345 8.0E-136 T 14-09-2016 IPR005694 Efflux pump membrane protein Emr GO:0006855|GO:0015238 PAJ_RS12545 f8222b20ae227baaf8de81fa9a355b3e 390 Pfam PF00529 HlyD membrane-fusion protein of T1SS 46 345 1.0E-13 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS12545 f8222b20ae227baaf8de81fa9a355b3e 390 Gene3D G3DSA:2.40.50.100 60 94 2.4E-19 T 14-09-2016 PAJ_RS12545 f8222b20ae227baaf8de81fa9a355b3e 390 Gene3D G3DSA:2.40.50.100 215 248 2.4E-19 T 14-09-2016 PAJ_RS12545 f8222b20ae227baaf8de81fa9a355b3e 390 SUPERFAMILY SSF111369 194 267 1.31E-9 T 14-09-2016 PAJ_RS12545 f8222b20ae227baaf8de81fa9a355b3e 390 SUPERFAMILY SSF111369 120 161 1.31E-9 T 14-09-2016 PAJ_RS12545 f8222b20ae227baaf8de81fa9a355b3e 390 PANTHER PTHR30386 1 376 2.3E-184 T 14-09-2016 PAJ_RS12545 f8222b20ae227baaf8de81fa9a355b3e 390 SUPERFAMILY SSF111369 56 112 9.81E-8 T 14-09-2016 PAJ_RS02935 2745be3038c39e7ae978d0582d9c717b 333 PANTHER PTHR30344:SF1 6 328 7.2E-96 T 14-09-2016 PAJ_RS02935 2745be3038c39e7ae978d0582d9c717b 333 PANTHER PTHR30344 6 328 7.2E-96 T 14-09-2016 PAJ_RS02935 2745be3038c39e7ae978d0582d9c717b 333 Pfam PF10282 Lactonase, 7-bladed beta-propeller 7 327 3.1E-89 T 14-09-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 PAJ_RS02935 2745be3038c39e7ae978d0582d9c717b 333 SUPERFAMILY SSF50974 4 291 3.53E-50 T 14-09-2016 IPR011045 Nitrous oxide reductase, N-terminal PAJ_RS02935 2745be3038c39e7ae978d0582d9c717b 333 Gene3D G3DSA:2.130.10.10 4 328 3.3E-84 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PAJ_RS02935 2745be3038c39e7ae978d0582d9c717b 333 Hamap MF_01605 6-phosphogluconolactonase [pgl]. 1 331 55.343 T 14-09-2016 IPR022528 6-phosphogluconolactonase, YbhE-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 PANTHER PTHR26402 88 104 2.2E-68 T 14-09-2016 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 SUPERFAMILY SSF47226 775 878 4.19E-17 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 SUPERFAMILY SSF47384 434 509 7.46E-6 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 PANTHER PTHR26402 139 264 2.2E-68 T 14-09-2016 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 Gene3D G3DSA:1.20.120.160 782 878 1.0E-26 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 Pfam PF16359 RcsD-ABL domain 678 780 1.7E-36 T 14-09-2016 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 Gene3D G3DSA:1.10.287.130 442 505 3.3E-4 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 556 668 4.5E-11 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 Hamap MF_00980 Phosphotransferase RcsD [rcsD]. 8 879 24.95 T 14-09-2016 IPR030861 Phosphotransferase RcsD GO:0000160|GO:0005887|GO:0009927 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 Pfam PF01627 Hpt domain 799 878 3.8E-10 T 14-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 SUPERFAMILY SSF55874 498 671 3.01E-19 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 PANTHER PTHR26402:SF603 88 104 2.2E-68 T 14-09-2016 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 Gene3D G3DSA:3.30.565.10 515 674 1.1E-20 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 PANTHER PTHR26402:SF603 139 264 2.2E-68 T 14-09-2016 PAJ_RS10505 f46623ab39facacc18b46ee58e249e4a 884 SMART SM00387 556 669 8.0E-7 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS00665 79eb7ae69b7cd0f7b67359a7dac7f698 403 PANTHER PTHR41379 1 369 1.3E-79 T 14-09-2016 PAJ_RS00665 79eb7ae69b7cd0f7b67359a7dac7f698 403 PANTHER PTHR41379:SF1 1 369 1.3E-79 T 14-09-2016 PAJ_RS00665 79eb7ae69b7cd0f7b67359a7dac7f698 403 Gene3D G3DSA:1.50.10.110 51 361 1.6E-93 T 14-09-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 PAJ_RS00665 79eb7ae69b7cd0f7b67359a7dac7f698 403 SUPERFAMILY SSF48230 63 358 1.01E-56 T 14-09-2016 IPR008929 Chondroitin AC/alginate lyase PAJ_RS00665 79eb7ae69b7cd0f7b67359a7dac7f698 403 Pfam PF05426 Alginate lyase 69 350 9.9E-84 T 14-09-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 PRINTS PR00990 Ribokinase signature 189 204 3.2E-8 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 PRINTS PR00990 Ribokinase signature 18 39 3.2E-8 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 PRINTS PR00990 Ribokinase signature 235 246 3.2E-8 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 PRINTS PR00990 Ribokinase signature 45 64 3.2E-8 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 PANTHER PTHR10584 7 317 5.5E-111 T 14-09-2016 PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 SUPERFAMILY SSF53613 14 306 2.49E-51 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 264 277 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 Pfam PF00294 pfkB family carbohydrate kinase 16 308 7.9E-47 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 PANTHER PTHR10584:SF183 7 317 5.5E-111 T 14-09-2016 PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 50 74 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS04820 06c926bd9fb87efa292b33a7a210f377 326 Gene3D G3DSA:3.40.1190.20 15 321 7.5E-55 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS16960 88a4ba7fed27b3b8ec28a794a7f67b01 367 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 299 328 - T 14-09-2016 IPR030390 RNA methyltransferase TrmA, active site PAJ_RS16960 88a4ba7fed27b3b8ec28a794a7f67b01 367 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 348 358 - T 14-09-2016 IPR030391 RNA methyltransferase TrmA, conserved site PAJ_RS16960 88a4ba7fed27b3b8ec28a794a7f67b01 367 Gene3D G3DSA:3.40.50.150 156 365 3.9E-42 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS16960 88a4ba7fed27b3b8ec28a794a7f67b01 367 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 366 43.213 T 14-09-2016 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 PAJ_RS16960 88a4ba7fed27b3b8ec28a794a7f67b01 367 SUPERFAMILY SSF53335 6 365 3.58E-52 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS16960 88a4ba7fed27b3b8ec28a794a7f67b01 367 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 10 366 7.1E-186 T 14-09-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 PAJ_RS16960 88a4ba7fed27b3b8ec28a794a7f67b01 367 PANTHER PTHR11061:SF25 6 366 1.8E-232 T 14-09-2016 PAJ_RS16960 88a4ba7fed27b3b8ec28a794a7f67b01 367 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 10 366 1.8E-186 T 14-09-2016 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 PAJ_RS16960 88a4ba7fed27b3b8ec28a794a7f67b01 367 PANTHER PTHR11061 6 366 1.8E-232 T 14-09-2016 PAJ_RS03660 aa205520560d003d5a19c10f4b46ab30 405 PANTHER PTHR30528 3 405 9.6E-118 T 14-09-2016 PAJ_RS03660 aa205520560d003d5a19c10f4b46ab30 405 Pfam PF06224 Winged helix DNA-binding domain 38 377 1.1E-78 T 14-09-2016 IPR009351 Protein of unknown function DUF1006 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 PANTHER PTHR30194 1 169 2.5E-72 T 14-09-2016 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 1.8E-65 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 SUPERFAMILY SSF53098 3 156 1.54E-55 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 47.636 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 1.7E-43 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 1.7E-43 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 1.7E-43 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 1.7E-43 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 1.7E-43 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 Gene3D G3DSA:3.30.420.10 3 155 4.0E-67 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 157 2.4E-81 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PAJ_RS08385 b7e7c089ed32041ebb419da7e7f76b38 175 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 14-09-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 PAJ_RS05115 06573004bf30cb11ea57c593589ef803 147 PANTHER PTHR23091 1 136 4.9E-37 T 14-09-2016 PAJ_RS05115 06573004bf30cb11ea57c593589ef803 147 Pfam PF13673 Acetyltransferase (GNAT) domain 27 134 3.8E-16 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS05115 06573004bf30cb11ea57c593589ef803 147 Gene3D G3DSA:3.40.630.30 2 142 1.8E-25 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05115 06573004bf30cb11ea57c593589ef803 147 PANTHER PTHR23091:SF277 1 136 4.9E-37 T 14-09-2016 PAJ_RS05115 06573004bf30cb11ea57c593589ef803 147 SUPERFAMILY SSF55729 2 142 9.57E-25 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05815 5fe17dbb51330eff31dace080f9f5360 244 PANTHER PTHR33121 9 238 8.3E-26 T 14-09-2016 PAJ_RS05815 5fe17dbb51330eff31dace080f9f5360 244 PANTHER PTHR33121:SF2 9 238 8.3E-26 T 14-09-2016 PAJ_RS05815 5fe17dbb51330eff31dace080f9f5360 244 Pfam PF00563 EAL domain 21 223 5.2E-11 T 14-09-2016 IPR001633 EAL domain PAJ_RS05815 5fe17dbb51330eff31dace080f9f5360 244 Gene3D G3DSA:3.20.20.450 111 231 8.2E-11 T 14-09-2016 IPR001633 EAL domain PAJ_RS05815 5fe17dbb51330eff31dace080f9f5360 244 SUPERFAMILY SSF141868 21 223 2.62E-13 T 14-09-2016 IPR001633 EAL domain PAJ_RS04370 a064228a9d4780de3fd1ee464dfca97d 191 PANTHER PTHR30529 3 184 1.4E-85 T 14-09-2016 PAJ_RS04370 a064228a9d4780de3fd1ee464dfca97d 191 PANTHER PTHR30529:SF5 3 184 1.4E-85 T 14-09-2016 PAJ_RS04370 a064228a9d4780de3fd1ee464dfca97d 191 SUPERFAMILY SSF81342 5 179 4.47E-38 T 14-09-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PAJ_RS04370 a064228a9d4780de3fd1ee464dfca97d 191 Pfam PF01292 Prokaryotic cytochrome b561 9 179 1.3E-27 T 14-09-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 PAJ_RS10175 6fa09e070e2c72ad8d29acc4756597fb 375 Gene3D G3DSA:1.20.1250.20 199 372 8.3E-7 T 14-09-2016 PAJ_RS10175 6fa09e070e2c72ad8d29acc4756597fb 375 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 14 371 6.5E-88 T 14-09-2016 IPR010645 Uncharacterised MFS-type transporter YbfB PAJ_RS10175 6fa09e070e2c72ad8d29acc4756597fb 375 PANTHER PTHR23537:SF1 3 375 1.4E-54 T 14-09-2016 PAJ_RS10175 6fa09e070e2c72ad8d29acc4756597fb 375 Gene3D G3DSA:1.20.1250.20 9 188 1.2E-10 T 14-09-2016 PAJ_RS10175 6fa09e070e2c72ad8d29acc4756597fb 375 SUPERFAMILY SSF103473 5 372 7.46E-26 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS10175 6fa09e070e2c72ad8d29acc4756597fb 375 PANTHER PTHR23537 3 375 1.4E-54 T 14-09-2016 PAJ_RS20720 e0227618603ebc198eb66206f9d43db4 343 SUPERFAMILY SSF53335 162 316 1.94E-27 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS20720 e0227618603ebc198eb66206f9d43db4 343 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS20720 e0227618603ebc198eb66206f9d43db4 343 Pfam PF05175 Methyltransferase small domain 167 333 4.2E-60 T 14-09-2016 IPR007848 Methyltransferase small domain GO:0008168 PAJ_RS20720 e0227618603ebc198eb66206f9d43db4 343 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 336 44.604 T 14-09-2016 IPR023543 rRNA small subunit methyltransferase C GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS20720 e0227618603ebc198eb66206f9d43db4 343 Gene3D G3DSA:3.40.50.150 164 333 9.2E-25 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS20720 e0227618603ebc198eb66206f9d43db4 343 Pfam PF08468 Methyltransferase small domain N-terminal 8 162 2.0E-57 T 14-09-2016 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS20720 e0227618603ebc198eb66206f9d43db4 343 PANTHER PTHR18895:SF70 53 341 7.6E-151 T 14-09-2016 PAJ_RS20720 e0227618603ebc198eb66206f9d43db4 343 PANTHER PTHR18895 53 341 7.6E-151 T 14-09-2016 PAJ_RS13625 7959f1d0ee911db6a1b8d9a3dc23aa23 106 PANTHER PTHR37811 1 98 1.5E-36 T 14-09-2016 PAJ_RS13625 7959f1d0ee911db6a1b8d9a3dc23aa23 106 Gene3D G3DSA:3.30.70.900 1 98 8.0E-22 T 14-09-2016 PAJ_RS13625 7959f1d0ee911db6a1b8d9a3dc23aa23 106 SUPERFAMILY SSF54909 1 98 4.13E-25 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS13625 7959f1d0ee911db6a1b8d9a3dc23aa23 106 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 8.3E-15 T 14-09-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain PAJ_RS13625 7959f1d0ee911db6a1b8d9a3dc23aa23 106 PANTHER PTHR37811:SF2 1 98 1.5E-36 T 14-09-2016 PAJ_RS19235 8b8aadcfadbda744724efda4caffb66b 443 Gene3D G3DSA:3.40.190.10 42 173 9.9E-14 T 14-09-2016 PAJ_RS19235 8b8aadcfadbda744724efda4caffb66b 443 SUPERFAMILY SSF53850 33 438 8.51E-62 T 14-09-2016 PAJ_RS19235 8b8aadcfadbda744724efda4caffb66b 443 Pfam PF13416 Bacterial extracellular solute-binding protein 56 369 2.3E-33 T 14-09-2016 PAJ_RS19235 8b8aadcfadbda744724efda4caffb66b 443 Gene3D G3DSA:3.40.190.10 174 365 5.8E-35 T 14-09-2016 PAJ_RS19235 8b8aadcfadbda744724efda4caffb66b 443 PANTHER PTHR30061 34 439 9.6E-48 T 14-09-2016 PAJ_RS17580 b92bd7ef68f49b3af2812b716eea9f99 622 PANTHER PTHR30540 12 622 5.3E-277 T 14-09-2016 PAJ_RS17580 b92bd7ef68f49b3af2812b716eea9f99 622 Pfam PF02705 K+ potassium transporter 14 544 8.1E-209 T 14-09-2016 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 PAJ_RS17580 b92bd7ef68f49b3af2812b716eea9f99 622 PANTHER PTHR30540:SF7 12 622 5.3E-277 T 14-09-2016 PAJ_RS17580 b92bd7ef68f49b3af2812b716eea9f99 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.615 T 14-09-2016 IPR023051 Potassium uptake protein, low affinity, Kup PAJ_RS17580 b92bd7ef68f49b3af2812b716eea9f99 622 TIGRFAM TIGR00794 kup: potassium uptake protein 99 550 1.7E-187 T 14-09-2016 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 PAJ_RS15975 a21d45f3f58a08ff33bba5555f626eec 326 Gene3D G3DSA:3.40.50.2300 53 170 3.7E-37 T 14-09-2016 PAJ_RS15975 a21d45f3f58a08ff33bba5555f626eec 326 Gene3D G3DSA:1.10.260.40 1 52 2.6E-23 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS15975 a21d45f3f58a08ff33bba5555f626eec 326 Gene3D G3DSA:3.40.50.2300 171 307 2.6E-46 T 14-09-2016 PAJ_RS15975 a21d45f3f58a08ff33bba5555f626eec 326 PANTHER PTHR30146 1 326 8.8E-101 T 14-09-2016 PAJ_RS15975 a21d45f3f58a08ff33bba5555f626eec 326 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 4.0E-17 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS15975 a21d45f3f58a08ff33bba5555f626eec 326 SMART SM00354 1 70 4.6E-28 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS15975 a21d45f3f58a08ff33bba5555f626eec 326 SUPERFAMILY SSF53822 61 325 3.73E-70 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS15975 a21d45f3f58a08ff33bba5555f626eec 326 Pfam PF13377 Periplasmic binding protein-like domain 166 326 1.2E-34 T 14-09-2016 PAJ_RS15975 a21d45f3f58a08ff33bba5555f626eec 326 SUPERFAMILY SSF47413 2 58 1.89E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 SMART SM00382 285 488 0.55 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 SMART SM00382 34 225 5.9E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 Pfam PF00005 ABC transporter 25 177 1.2E-26 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 Pfam PF00005 ABC transporter 277 431 2.8E-22 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 SUPERFAMILY SSF52540 9 236 1.33E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 Gene3D G3DSA:3.40.50.300 276 494 4.5E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 Gene3D G3DSA:3.40.50.300 7 238 5.7E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 PANTHER PTHR24220 11 385 2.3E-187 T 14-09-2016 PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 SUPERFAMILY SSF52540 265 492 6.63E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS11460 19bf4dd95af69d683b7ad431a9e24a7c 501 PANTHER PTHR24220:SF538 11 385 2.3E-187 T 14-09-2016 PAJ_RS07690 b98af9e263358bab7af7239e030fbfab 295 Gene3D G3DSA:3.20.20.140 164 268 3.5E-41 T 14-09-2016 PAJ_RS07690 b98af9e263358bab7af7239e030fbfab 295 Gene3D G3DSA:3.20.20.140 10 95 3.5E-41 T 14-09-2016 PAJ_RS07690 b98af9e263358bab7af7239e030fbfab 295 SUPERFAMILY SSF89550 172 282 1.1E-50 T 14-09-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 PAJ_RS07690 b98af9e263358bab7af7239e030fbfab 295 SUPERFAMILY SSF89550 9 90 1.1E-50 T 14-09-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 PAJ_RS07690 b98af9e263358bab7af7239e030fbfab 295 Pfam PF02811 PHP domain 11 141 8.2E-9 T 14-09-2016 IPR004013 PHP domain GO:0003824 PAJ_RS07690 b98af9e263358bab7af7239e030fbfab 295 PANTHER PTHR30007 9 282 1.7E-100 T 14-09-2016 PAJ_RS07690 b98af9e263358bab7af7239e030fbfab 295 PANTHER PTHR30007:SF4 9 282 1.7E-100 T 14-09-2016 PAJ_RS07690 b98af9e263358bab7af7239e030fbfab 295 SMART SM00481 10 77 4.2E-19 T 14-09-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 PAJ_RS11015 a52ca3f084a11ebb5cac29f9731fffba 369 Gene3D G3DSA:3.40.50.300 3 233 1.5E-83 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11015 a52ca3f084a11ebb5cac29f9731fffba 369 Pfam PF00005 ABC transporter 19 161 6.1E-38 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS11015 a52ca3f084a11ebb5cac29f9731fffba 369 SUPERFAMILY SSF50331 236 349 1.6E-18 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS11015 a52ca3f084a11ebb5cac29f9731fffba 369 SUPERFAMILY SSF52540 4 242 2.46E-87 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11015 a52ca3f084a11ebb5cac29f9731fffba 369 PANTHER PTHR24220 5 300 2.2E-142 T 14-09-2016 PAJ_RS11015 a52ca3f084a11ebb5cac29f9731fffba 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS11015 a52ca3f084a11ebb5cac29f9731fffba 369 Gene3D G3DSA:2.40.50.140 273 332 3.3E-7 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS11015 a52ca3f084a11ebb5cac29f9731fffba 369 PANTHER PTHR24220:SF151 5 300 2.2E-142 T 14-09-2016 PAJ_RS11015 a52ca3f084a11ebb5cac29f9731fffba 369 SMART SM00382 28 211 8.9E-17 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS11015 a52ca3f084a11ebb5cac29f9731fffba 369 Pfam PF08402 TOBE domain 271 340 8.5E-7 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PAJ_RS14215 c99efc8128d3b232b226611e1835655e 436 Gene3D G3DSA:1.20.1250.20 21 214 1.8E-49 T 14-09-2016 PAJ_RS14215 c99efc8128d3b232b226611e1835655e 436 Gene3D G3DSA:1.20.1250.20 245 434 4.8E-21 T 14-09-2016 PAJ_RS14215 c99efc8128d3b232b226611e1835655e 436 PANTHER PTHR11662:SF285 17 434 7.3E-230 T 14-09-2016 PAJ_RS14215 c99efc8128d3b232b226611e1835655e 436 PANTHER PTHR11662 17 434 7.3E-230 T 14-09-2016 PAJ_RS14215 c99efc8128d3b232b226611e1835655e 436 Pfam PF07690 Major Facilitator Superfamily 31 390 7.1E-54 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS14215 c99efc8128d3b232b226611e1835655e 436 SUPERFAMILY SSF103473 12 434 9.16E-78 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 SUPERFAMILY SSF52172 3 125 1.71E-42 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 Pfam PF00072 Response regulator receiver domain 5 117 3.9E-28 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 PANTHER PTHR26402 3 228 2.2E-151 T 14-09-2016 PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 8.5E-28 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 SMART SM00448 3 116 5.2E-44 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 SMART SM00862 150 225 1.0E-25 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 PANTHER PTHR26402:SF576 3 228 2.2E-151 T 14-09-2016 PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 Gene3D G3DSA:1.10.10.10 129 227 2.3E-35 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 1.5E-114 T 14-09-2016 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 Gene3D G3DSA:3.40.50.2300 3 122 3.0E-40 T 14-09-2016 PAJ_RS01500 1247d5b97c012c1e7c68df133360a085 229 SUPERFAMILY SSF46894 129 226 3.4E-31 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS02010 93962143fb68357cac1052488163e726 164 PIRSF PIRSF001467 1 164 9.0E-30 T 14-09-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 PAJ_RS02010 93962143fb68357cac1052488163e726 164 PANTHER PTHR11071 1 164 1.5E-80 T 14-09-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 PAJ_RS02010 93962143fb68357cac1052488163e726 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 14-09-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 PAJ_RS02010 93962143fb68357cac1052488163e726 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 162 5.0E-49 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PAJ_RS02010 93962143fb68357cac1052488163e726 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 2.3E-11 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PAJ_RS02010 93962143fb68357cac1052488163e726 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 2.3E-11 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PAJ_RS02010 93962143fb68357cac1052488163e726 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 2.3E-11 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PAJ_RS02010 93962143fb68357cac1052488163e726 164 PANTHER PTHR11071:SF192 1 164 1.5E-80 T 14-09-2016 PAJ_RS02010 93962143fb68357cac1052488163e726 164 Gene3D G3DSA:2.40.100.10 2 162 1.7E-55 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS02010 93962143fb68357cac1052488163e726 164 SUPERFAMILY SSF50891 1 162 1.75E-58 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS12535 fc3ec3298fc9b2f842603c8ab133fccc 399 Gene3D G3DSA:1.20.1250.20 218 391 3.6E-13 T 14-09-2016 PAJ_RS12535 fc3ec3298fc9b2f842603c8ab133fccc 399 PANTHER PTHR23501:SF79 3 395 2.7E-180 T 14-09-2016 PAJ_RS12535 fc3ec3298fc9b2f842603c8ab133fccc 399 SUPERFAMILY SSF103473 12 391 4.19E-53 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS12535 fc3ec3298fc9b2f842603c8ab133fccc 399 PANTHER PTHR23501 3 395 2.7E-180 T 14-09-2016 PAJ_RS12535 fc3ec3298fc9b2f842603c8ab133fccc 399 Gene3D G3DSA:1.20.1250.20 11 187 1.8E-25 T 14-09-2016 PAJ_RS12535 fc3ec3298fc9b2f842603c8ab133fccc 399 Pfam PF07690 Major Facilitator Superfamily 18 194 1.5E-23 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS12535 fc3ec3298fc9b2f842603c8ab133fccc 399 Pfam PF07690 Major Facilitator Superfamily 218 385 1.7E-12 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS15185 0129c4b76252a404123669574391038a 291 Pfam PF01791 DeoC/LacD family aldolase 17 257 1.2E-52 T 14-09-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 PAJ_RS15185 0129c4b76252a404123669574391038a 291 PANTHER PTHR39340:SF1 1 291 4.3E-120 T 14-09-2016 PAJ_RS15185 0129c4b76252a404123669574391038a 291 PANTHER PTHR39340 1 291 4.3E-120 T 14-09-2016 PAJ_RS15185 0129c4b76252a404123669574391038a 291 SUPERFAMILY SSF51569 3 288 1.76E-60 T 14-09-2016 PAJ_RS15185 0129c4b76252a404123669574391038a 291 PIRSF PIRSF037840 1 291 8.1E-129 T 14-09-2016 IPR017291 Sulfofructosephosphate aldolase, YihT GO:0061595|GO:1902777 MetaCyc: PWY-7446 PAJ_RS15185 0129c4b76252a404123669574391038a 291 SMART SM01133 16 258 2.5E-11 T 14-09-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 PAJ_RS15185 0129c4b76252a404123669574391038a 291 Hamap MF_01912 Sulfofructosephosphate aldolase. 1 291 60.876 T 14-09-2016 IPR017291 Sulfofructosephosphate aldolase, YihT GO:0061595|GO:1902777 MetaCyc: PWY-7446 PAJ_RS15185 0129c4b76252a404123669574391038a 291 Gene3D G3DSA:3.20.20.70 3 288 8.9E-94 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS12010 6f3ec8162f78c39f47d3c16f5ad3f968 279 Gene3D G3DSA:3.40.50.10490 106 260 9.1E-38 T 14-09-2016 PAJ_RS12010 6f3ec8162f78c39f47d3c16f5ad3f968 279 PANTHER PTHR30514 1 272 2.1E-155 T 14-09-2016 PAJ_RS12010 6f3ec8162f78c39f47d3c16f5ad3f968 279 Pfam PF01380 SIS domain 126 254 8.0E-28 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS12010 6f3ec8162f78c39f47d3c16f5ad3f968 279 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 76 9.1E-26 T 14-09-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PAJ_RS12010 6f3ec8162f78c39f47d3c16f5ad3f968 279 SUPERFAMILY SSF53697 104 276 1.37E-35 T 14-09-2016 PAJ_RS12010 6f3ec8162f78c39f47d3c16f5ad3f968 279 Gene3D G3DSA:1.10.10.10 1 77 1.8E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12010 6f3ec8162f78c39f47d3c16f5ad3f968 279 SUPERFAMILY SSF46689 1 77 4.66E-19 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS12010 6f3ec8162f78c39f47d3c16f5ad3f968 279 PANTHER PTHR30514:SF5 1 272 2.1E-155 T 14-09-2016 PAJ_RS06460 a4945e114ca500ba4085d35a989e4961 309 Hamap MF_00483 DNA replication terminus site-binding protein [tus]. 1 307 43.949 T 14-09-2016 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 PAJ_RS06460 a4945e114ca500ba4085d35a989e4961 309 Gene3D G3DSA:3.50.14.10 236 279 1.1E-83 T 14-09-2016 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 PAJ_RS06460 a4945e114ca500ba4085d35a989e4961 309 Gene3D G3DSA:3.50.14.10 7 173 1.1E-83 T 14-09-2016 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 PAJ_RS06460 a4945e114ca500ba4085d35a989e4961 309 SUPERFAMILY SSF56596 6 305 2.35E-105 T 14-09-2016 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 PAJ_RS06460 a4945e114ca500ba4085d35a989e4961 309 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 10 304 2.5E-131 T 14-09-2016 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 PAJ_RS06460 a4945e114ca500ba4085d35a989e4961 309 Gene3D G3DSA:3.30.54.10 174 235 1.2E-33 T 14-09-2016 PAJ_RS06460 a4945e114ca500ba4085d35a989e4961 309 Gene3D G3DSA:3.30.54.10 293 306 1.2E-33 T 14-09-2016 PAJ_RS06460 a4945e114ca500ba4085d35a989e4961 309 TIGRFAM TIGR02648 rep_term_tus: DNA replication terminus site-binding protein 10 306 5.1E-135 T 14-09-2016 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 PAJ_RS07035 a642d39adfb22efd1d101a2e53feb3e5 458 Gene3D G3DSA:3.90.1300.10 15 447 5.3E-83 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS07035 a642d39adfb22efd1d101a2e53feb3e5 458 PANTHER PTHR11895:SF7 17 457 7.0E-66 T 14-09-2016 PAJ_RS07035 a642d39adfb22efd1d101a2e53feb3e5 458 SUPERFAMILY SSF75304 15 447 9.81E-78 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS07035 a642d39adfb22efd1d101a2e53feb3e5 458 Pfam PF01425 Amidase 35 440 5.8E-57 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS07035 a642d39adfb22efd1d101a2e53feb3e5 458 PANTHER PTHR11895 17 457 7.0E-66 T 14-09-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS07945 62a8ffd694edb4400d90868346a9fb6c 283 SUPERFAMILY SSF51430 6 279 9.17E-80 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS07945 62a8ffd694edb4400d90868346a9fb6c 283 Gene3D G3DSA:3.20.20.100 13 275 4.7E-79 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS07945 62a8ffd694edb4400d90868346a9fb6c 283 PRINTS PR00069 Aldo-keto reductase signature 205 229 1.4E-16 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS07945 62a8ffd694edb4400d90868346a9fb6c 283 PRINTS PR00069 Aldo-keto reductase signature 40 64 1.4E-16 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS07945 62a8ffd694edb4400d90868346a9fb6c 283 PRINTS PR00069 Aldo-keto reductase signature 96 114 1.4E-16 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS07945 62a8ffd694edb4400d90868346a9fb6c 283 PRINTS PR00069 Aldo-keto reductase signature 126 143 1.4E-16 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PAJ_RS07945 62a8ffd694edb4400d90868346a9fb6c 283 PANTHER PTHR11732:SF98 1 275 1.5E-111 T 14-09-2016 PAJ_RS07945 62a8ffd694edb4400d90868346a9fb6c 283 Pfam PF00248 Aldo/keto reductase family 16 269 4.5E-57 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS07945 62a8ffd694edb4400d90868346a9fb6c 283 PANTHER PTHR11732 1 275 1.5E-111 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PAJ_RS00325 51406a927a79ff9bce4838fe9b48a151 352 SUPERFAMILY SSF53756 4 350 2.9E-131 T 14-09-2016 PAJ_RS00325 51406a927a79ff9bce4838fe9b48a151 352 Gene3D G3DSA:3.40.50.2000 252 333 1.6E-5 T 14-09-2016 PAJ_RS00325 51406a927a79ff9bce4838fe9b48a151 352 Gene3D G3DSA:3.40.50.2000 3 194 1.9E-76 T 14-09-2016 PAJ_RS00325 51406a927a79ff9bce4838fe9b48a151 352 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 183 342 5.3E-40 T 14-09-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00325 51406a927a79ff9bce4838fe9b48a151 352 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 7 143 1.0E-47 T 14-09-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00325 51406a927a79ff9bce4838fe9b48a151 352 PANTHER PTHR21015:SF22 5 347 3.3E-132 T 14-09-2016 PAJ_RS00325 51406a927a79ff9bce4838fe9b48a151 352 PANTHER PTHR21015 5 347 3.3E-132 T 14-09-2016 PAJ_RS00325 51406a927a79ff9bce4838fe9b48a151 352 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 6 351 35.138 T 14-09-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00325 51406a927a79ff9bce4838fe9b48a151 352 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 4 346 2.2E-115 T 14-09-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS20135 35f9e22a256091000afa6c831f686d39 359 Gene3D G3DSA:3.20.20.140 20 358 9.9E-113 T 14-09-2016 PAJ_RS20135 35f9e22a256091000afa6c831f686d39 359 ProSitePatterns PS01322 Phosphotriesterase family signature 1. 34 42 - T 14-09-2016 IPR017947 Aryldialkylphosphatase, zinc-binding site GO:0008270|GO:0009056|GO:0016788 PAJ_RS20135 35f9e22a256091000afa6c831f686d39 359 Pfam PF02126 Phosphotriesterase family 30 357 4.9E-68 T 14-09-2016 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 PAJ_RS20135 35f9e22a256091000afa6c831f686d39 359 PANTHER PTHR10819 14 357 3.0E-121 T 14-09-2016 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 PAJ_RS20135 35f9e22a256091000afa6c831f686d39 359 SUPERFAMILY SSF51556 18 58 4.14E-87 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS20135 35f9e22a256091000afa6c831f686d39 359 SUPERFAMILY SSF51556 85 358 4.14E-87 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS11645 549966bb75c14397161664a1297d8a6e 427 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 11 405 3.0E-130 T 14-09-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PAJ_RS11645 549966bb75c14397161664a1297d8a6e 427 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 329 349 - T 14-09-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PAJ_RS11645 549966bb75c14397161664a1297d8a6e 427 PANTHER PTHR11119 1 426 4.4E-176 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS11645 549966bb75c14397161664a1297d8a6e 427 PANTHER PTHR11119:SF49 1 426 4.4E-176 T 14-09-2016 PAJ_RS11645 549966bb75c14397161664a1297d8a6e 427 Pfam PF00860 Permease family 16 383 2.1E-107 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS11385 83a80eef54765da131b7025c5eb7f32f 141 Hamap MF_01127 Acetyltransferase YpeA [ypeA]. 1 141 46.79 T 14-09-2016 IPR023072 Acetyltransferase, YpeA GO:0016747 PAJ_RS11385 83a80eef54765da131b7025c5eb7f32f 141 Pfam PF00583 Acetyltransferase (GNAT) family 48 124 7.8E-17 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS11385 83a80eef54765da131b7025c5eb7f32f 141 Gene3D G3DSA:3.40.630.30 1 121 6.4E-35 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS11385 83a80eef54765da131b7025c5eb7f32f 141 PIRSF PIRSF037663 1 130 3.2E-11 T 14-09-2016 IPR017255 Acetyltransferase, GNAT, predicted PAJ_RS11385 83a80eef54765da131b7025c5eb7f32f 141 SUPERFAMILY SSF55729 1 129 9.67E-33 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS11385 83a80eef54765da131b7025c5eb7f32f 141 PANTHER PTHR23091:SF274 1 129 4.6E-28 T 14-09-2016 PAJ_RS11385 83a80eef54765da131b7025c5eb7f32f 141 PANTHER PTHR23091 1 129 4.6E-28 T 14-09-2016 PAJ_RS00215 fd2236b69a77effa83b8cfd5b1416437 435 Gene3D G3DSA:1.20.1250.20 17 212 1.5E-45 T 14-09-2016 PAJ_RS00215 fd2236b69a77effa83b8cfd5b1416437 435 PANTHER PTHR11662 16 435 9.6E-130 T 14-09-2016 PAJ_RS00215 fd2236b69a77effa83b8cfd5b1416437 435 SUPERFAMILY SSF103473 1 432 1.05E-80 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS00215 fd2236b69a77effa83b8cfd5b1416437 435 Gene3D G3DSA:1.20.1250.20 236 429 4.1E-25 T 14-09-2016 PAJ_RS00215 fd2236b69a77effa83b8cfd5b1416437 435 PANTHER PTHR11662:SF18 16 435 9.6E-130 T 14-09-2016 PAJ_RS00215 fd2236b69a77effa83b8cfd5b1416437 435 Pfam PF07690 Major Facilitator Superfamily 31 392 2.3E-53 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS13015 5fef7bda860b6ec4e79903cea276910d 256 SUPERFAMILY SSF51621 3 255 2.17E-83 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS13015 5fef7bda860b6ec4e79903cea276910d 256 PANTHER PTHR30502 1 255 4.1E-162 T 14-09-2016 PAJ_RS13015 5fef7bda860b6ec4e79903cea276910d 256 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 21 245 1.9E-57 T 14-09-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 PAJ_RS13015 5fef7bda860b6ec4e79903cea276910d 256 PANTHER PTHR30502:SF4 1 255 4.1E-162 T 14-09-2016 PAJ_RS13015 5fef7bda860b6ec4e79903cea276910d 256 Hamap MF_01291 5-keto-4-deoxy-D-glucarate aldolase [garL]. 1 256 69.046 T 14-09-2016 IPR017648 5-keto-4-deoxy-D-glucarate aldolase GO:0008672|GO:0019394 KEGG: 00053+4.1.2.20|UniPathway: UPA00565 PAJ_RS13015 5fef7bda860b6ec4e79903cea276910d 256 TIGRFAM TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase 8 256 1.0E-139 T 14-09-2016 IPR017648 5-keto-4-deoxy-D-glucarate aldolase GO:0008672|GO:0019394 KEGG: 00053+4.1.2.20|UniPathway: UPA00565 PAJ_RS13015 5fef7bda860b6ec4e79903cea276910d 256 Gene3D G3DSA:3.20.20.60 5 254 5.9E-80 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PAJ_RS05865 35f5e4dd03bbd24f28ae42154c21998b 497 Pfam PF01458 Uncharacterized protein family (UPF0051) 236 468 3.7E-68 T 14-09-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 PAJ_RS05865 35f5e4dd03bbd24f28ae42154c21998b 497 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 20 488 2.3E-194 T 14-09-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 PAJ_RS05865 35f5e4dd03bbd24f28ae42154c21998b 497 PANTHER PTHR30508:SF1 17 497 6.9E-289 T 14-09-2016 PAJ_RS05865 35f5e4dd03bbd24f28ae42154c21998b 497 PANTHER PTHR30508 17 497 6.9E-289 T 14-09-2016 PAJ_RS05865 35f5e4dd03bbd24f28ae42154c21998b 497 SUPERFAMILY SSF101960 40 85 9.94E-137 T 14-09-2016 PAJ_RS05865 35f5e4dd03bbd24f28ae42154c21998b 497 SUPERFAMILY SSF101960 127 494 9.94E-137 T 14-09-2016 PAJ_RS10405 a44349f46cc09f38c210cac13bb24b42 179 Pfam PF08281 Sigma-70, region 4 111 163 5.2E-16 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS10405 a44349f46cc09f38c210cac13bb24b42 179 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 28 162 1.7E-17 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS10405 a44349f46cc09f38c210cac13bb24b42 179 PANTHER PTHR30173:SF9 9 163 3.3E-27 T 14-09-2016 PAJ_RS10405 a44349f46cc09f38c210cac13bb24b42 179 Pfam PF04542 Sigma-70 region 2 16 80 6.4E-5 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS10405 a44349f46cc09f38c210cac13bb24b42 179 Gene3D G3DSA:1.10.10.10 109 161 3.4E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10405 a44349f46cc09f38c210cac13bb24b42 179 Gene3D G3DSA:1.10.1740.10 14 103 6.2E-4 T 14-09-2016 PAJ_RS10405 a44349f46cc09f38c210cac13bb24b42 179 PANTHER PTHR30173 9 163 3.3E-27 T 14-09-2016 PAJ_RS10405 a44349f46cc09f38c210cac13bb24b42 179 SUPERFAMILY SSF88659 93 163 1.63E-13 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS10405 a44349f46cc09f38c210cac13bb24b42 179 SUPERFAMILY SSF88946 11 96 1.06E-5 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 Gene3D G3DSA:3.40.50.720 235 442 1.1E-73 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 Gene3D G3DSA:1.20.5.100 207 233 2.3E-18 T 14-09-2016 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 SUPERFAMILY SSF48179 203 300 1.43E-34 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 424 1.2E-28 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 PIRSF PIRSF500134 1 442 9.7E-191 T 14-09-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 1.3E-139 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 SMART SM00984 320 424 3.3E-49 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 PANTHER PTHR11374:SF18 1 444 6.9E-256 T 14-09-2016 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 SUPERFAMILY SSF52413 309 435 1.02E-38 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 Gene3D G3DSA:3.40.50.720 1 206 2.5E-76 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 1.8E-39 T 14-09-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 SUPERFAMILY SSF51735 1 195 6.23E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 186 7.3E-65 T 14-09-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 PANTHER PTHR11374 1 444 6.9E-256 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PAJ_RS07835 62acd0cc74cb44370923802f7c605aad 446 PIRSF PIRSF000124 1 439 4.6E-150 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PAJ_RS01985 441ed382fa395c6fc69b07e85213f984 805 Pfam PF02687 FtsX-like permease family 247 364 2.2E-9 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PAJ_RS01985 441ed382fa395c6fc69b07e85213f984 805 Pfam PF02687 FtsX-like permease family 683 794 2.8E-15 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PAJ_RS01985 441ed382fa395c6fc69b07e85213f984 805 PANTHER PTHR30287 1 793 1.2E-154 T 14-09-2016 PAJ_RS17360 65db9df7f5f99b3d84ae96a3d2c7fca5 351 Gene3D G3DSA:1.10.510.10 69 275 3.9E-44 T 14-09-2016 PAJ_RS17360 65db9df7f5f99b3d84ae96a3d2c7fca5 351 PANTHER PTHR24362 4 276 4.0E-60 T 14-09-2016 PAJ_RS17360 65db9df7f5f99b3d84ae96a3d2c7fca5 351 Gene3D G3DSA:3.30.200.20 3 68 9.1E-18 T 14-09-2016 PAJ_RS17360 65db9df7f5f99b3d84ae96a3d2c7fca5 351 SMART SM00220 8 276 4.1E-49 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 PAJ_RS17360 65db9df7f5f99b3d84ae96a3d2c7fca5 351 SUPERFAMILY SSF50249 282 343 2.61E-7 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS17360 65db9df7f5f99b3d84ae96a3d2c7fca5 351 Pfam PF00069 Protein kinase domain 8 275 7.8E-48 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 PAJ_RS17360 65db9df7f5f99b3d84ae96a3d2c7fca5 351 Gene3D G3DSA:2.40.50.140 286 334 2.5E-6 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS17360 65db9df7f5f99b3d84ae96a3d2c7fca5 351 SUPERFAMILY SSF56112 3 275 2.02E-62 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS17360 65db9df7f5f99b3d84ae96a3d2c7fca5 351 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 123 135 - T 14-09-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 PAJ_RS13615 88db5b80435985c6af9867c195d75d13 127 SUPERFAMILY SSF46785 13 120 1.02E-32 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13615 88db5b80435985c6af9867c195d75d13 127 Gene3D G3DSA:1.10.10.10 4 122 2.3E-45 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13615 88db5b80435985c6af9867c195d75d13 127 PANTHER PTHR33204 6 122 1.5E-59 T 14-09-2016 PAJ_RS13615 88db5b80435985c6af9867c195d75d13 127 PANTHER PTHR33204:SF7 6 122 1.5E-59 T 14-09-2016 PAJ_RS13615 88db5b80435985c6af9867c195d75d13 127 Pfam PF01638 HxlR-like helix-turn-helix 28 115 3.5E-29 T 14-09-2016 IPR002577 Helix-turn-helix, HxlR type PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 197 213 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 Pfam PF11890 Domain of unknown function (DUF3410) 289 369 2.0E-30 T 14-09-2016 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181|UniPathway: UPA00244 PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 256 1.4E-30 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 PANTHER PTHR10996:SF111 1 330 1.7E-176 T 14-09-2016 PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 SUPERFAMILY SSF51735 91 247 4.1E-31 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 280 6.1E-19 T 14-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 119 146 - T 14-09-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 PANTHER PTHR10996 1 330 1.7E-176 T 14-09-2016 PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 Gene3D G3DSA:3.40.50.720 2 110 2.6E-24 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 Gene3D G3DSA:3.40.50.720 111 259 3.4E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 SUPERFAMILY SSF52283 4 110 9.78E-19 T 14-09-2016 PAJ_RS10815 3b101c578f0261e904f2fcd80ccb9574 377 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 357 47.282 T 14-09-2016 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181|UniPathway: UPA00244 PAJ_RS07595 5be5dbbc184d6aac0c76f0f708003e3b 107 PANTHER PTHR12789 7 107 2.7E-36 T 14-09-2016 PAJ_RS07595 5be5dbbc184d6aac0c76f0f708003e3b 107 Gene3D G3DSA:3.30.780.10 27 107 8.7E-35 T 14-09-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 PAJ_RS07595 5be5dbbc184d6aac0c76f0f708003e3b 107 SUPERFAMILY SSF55159 8 103 4.19E-25 T 14-09-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 PAJ_RS07595 5be5dbbc184d6aac0c76f0f708003e3b 107 PIRSF PIRSF037511 1 107 1.1E-34 T 14-09-2016 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 PAJ_RS07595 5be5dbbc184d6aac0c76f0f708003e3b 107 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 7 107 7.3E-38 T 14-09-2016 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 PAJ_RS07595 5be5dbbc184d6aac0c76f0f708003e3b 107 Pfam PF01253 Translation initiation factor SUI1 31 100 6.0E-19 T 14-09-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 PANTHER PTHR18934 16 438 3.3E-151 T 14-09-2016 PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 Gene3D G3DSA:3.40.50.300 215 355 5.2E-14 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 PIRSF PIRSF005496 12 825 0.0 T 14-09-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 SMART SM00847 401 506 9.1E-9 T 14-09-2016 IPR007502 Helicase-associated domain GO:0004386 PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 Pfam PF04408 Helicase associated domain (HA2) 402 460 5.7E-12 T 14-09-2016 IPR007502 Helicase-associated domain GO:0004386 PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 17 823 0.0 T 14-09-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 SMART SM00487 15 199 7.4E-23 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 SMART SM00490 239 341 1.6E-14 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 SUPERFAMILY SSF52540 26 441 1.66E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 Pfam PF00270 DEAD/DEAH box helicase 32 173 1.2E-9 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 Pfam PF08482 ATP-dependent helicase C-terminal 679 811 2.6E-54 T 14-09-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 Gene3D G3DSA:3.40.50.300 17 173 3.5E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00595 0dde0887f3285f70da521e6318366176 831 Pfam PF00271 Helicase conserved C-terminal domain 219 340 1.1E-10 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS01925 d45a7f51f0351eed172c758624193973 159 PIRSF PIRSF006181 1 159 3.9E-55 T 14-09-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC PAJ_RS01925 d45a7f51f0351eed172c758624193973 159 Gene3D G3DSA:3.90.960.10 1 157 3.0E-59 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS01925 d45a7f51f0351eed172c758624193973 159 Pfam PF04073 Aminoacyl-tRNA editing domain 31 146 6.2E-24 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS01925 d45a7f51f0351eed172c758624193973 159 PANTHER PTHR30411 1 158 3.0E-70 T 14-09-2016 PAJ_RS01925 d45a7f51f0351eed172c758624193973 159 PANTHER PTHR30411:SF0 1 158 3.0E-70 T 14-09-2016 PAJ_RS01925 d45a7f51f0351eed172c758624193973 159 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 1.1E-54 T 14-09-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC PAJ_RS01925 d45a7f51f0351eed172c758624193973 159 SUPERFAMILY SSF55826 2 155 1.83E-43 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 Gene3D G3DSA:2.40.50.100 20 82 8.2E-32 T 14-09-2016 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 14-09-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 7.0E-18 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 PANTHER PTHR15893 1 85 5.5E-52 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 2.8E-43 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 SUPERFAMILY SSF110324 2 82 1.6E-34 T 14-09-2016 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 Pfam PF01016 Ribosomal L27 protein 2 82 2.8E-39 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 3.9E-38 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 3.9E-38 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 3.9E-38 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19830 fff02531ff2ba1a6d29bb93f53ab0026 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.372 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 PIRSF PIRSF001553 1 291 3.8E-134 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.1E-39 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.1E-39 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.1E-39 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.1E-39 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 SMART SM00881 4 100 1.1E-34 T 14-09-2016 IPR003781 CoA-binding GO:0048037 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 Gene3D G3DSA:3.40.50.720 2 119 2.9E-55 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 Pfam PF02629 CoA binding domain 6 99 9.1E-30 T 14-09-2016 IPR003781 CoA-binding GO:0048037 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 Pfam PF00549 CoA-ligase 151 271 4.4E-20 T 14-09-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 SUPERFAMILY SSF51735 1 122 9.36E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 14-09-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 Gene3D G3DSA:3.40.50.261 120 287 1.3E-77 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 PANTHER PTHR11117 1 288 5.7E-195 T 14-09-2016 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 SUPERFAMILY SSF52210 123 287 3.01E-57 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS02745 c66d8c8374dd958e9124c1d3767e454f 291 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 288 3.9E-145 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PAJ_RS06110 7fcc2ad586abbebf0a24e015f9bb5b21 121 PANTHER PTHR33516:SF1 1 118 4.0E-49 T 14-09-2016 PAJ_RS06110 7fcc2ad586abbebf0a24e015f9bb5b21 121 Pfam PF00717 Peptidase S24-like 37 85 1.7E-12 T 14-09-2016 IPR019759 Peptidase S24/S26A/S26B PAJ_RS06110 7fcc2ad586abbebf0a24e015f9bb5b21 121 Gene3D G3DSA:2.10.109.10 7 120 2.9E-47 T 14-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PAJ_RS06110 7fcc2ad586abbebf0a24e015f9bb5b21 121 PANTHER PTHR33516 1 118 4.0E-49 T 14-09-2016 PAJ_RS06110 7fcc2ad586abbebf0a24e015f9bb5b21 121 SUPERFAMILY SSF51306 2 118 5.76E-33 T 14-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PAJ_RS06110 7fcc2ad586abbebf0a24e015f9bb5b21 121 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 73 85 1.8E-11 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PAJ_RS06110 7fcc2ad586abbebf0a24e015f9bb5b21 121 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 45 56 1.8E-11 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PAJ_RS06110 7fcc2ad586abbebf0a24e015f9bb5b21 121 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 34 44 1.8E-11 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PAJ_RS14460 0af1fa6907780295edd742d0aab18d1e 311 PRINTS PR00207 Flagellin signature 110 133 1.9E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS14460 0af1fa6907780295edd742d0aab18d1e 311 PRINTS PR00207 Flagellin signature 75 94 1.9E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS14460 0af1fa6907780295edd742d0aab18d1e 311 PRINTS PR00207 Flagellin signature 36 53 1.9E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS14460 0af1fa6907780295edd742d0aab18d1e 311 PANTHER PTHR30244:SF1 2 310 1.6E-111 T 14-09-2016 PAJ_RS14460 0af1fa6907780295edd742d0aab18d1e 311 PANTHER PTHR30244 2 310 1.6E-111 T 14-09-2016 PAJ_RS14460 0af1fa6907780295edd742d0aab18d1e 311 SUPERFAMILY SSF64518 1 310 1.83E-90 T 14-09-2016 PAJ_RS14460 0af1fa6907780295edd742d0aab18d1e 311 Pfam PF00700 Bacterial flagellin C-terminal helical region 225 309 7.7E-26 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS14460 0af1fa6907780295edd742d0aab18d1e 311 Gene3D G3DSA:1.20.1330.10 212 266 2.0E-51 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS14460 0af1fa6907780295edd742d0aab18d1e 311 Gene3D G3DSA:1.20.1330.10 53 172 2.0E-51 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS14460 0af1fa6907780295edd742d0aab18d1e 311 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 138 4.3E-41 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS02995 b2ea13afb5d6fb394160873bfab17119 161 PANTHER PTHR22960 1 158 2.5E-108 T 14-09-2016 PAJ_RS02995 b2ea13afb5d6fb394160873bfab17119 161 SUPERFAMILY SSF55040 11 155 1.96E-60 T 14-09-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 PAJ_RS02995 b2ea13afb5d6fb394160873bfab17119 161 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 158 35.627 T 14-09-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type UniPathway: UPA00344 PAJ_RS02995 b2ea13afb5d6fb394160873bfab17119 161 Gene3D G3DSA:3.30.70.640 3 157 4.5E-68 T 14-09-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 PAJ_RS02995 b2ea13afb5d6fb394160873bfab17119 161 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 1.5E-70 T 14-09-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 PAJ_RS02995 b2ea13afb5d6fb394160873bfab17119 161 Pfam PF01967 MoaC family 15 150 8.1E-54 T 14-09-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 Pfam PF07719 Tetratricopeptide repeat 96 129 5.2E-5 T 14-09-2016 IPR013105 Tetratricopeptide repeat 2 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 PANTHER PTHR23083 58 290 1.3E-27 T 14-09-2016 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 PANTHER PTHR23083 31 38 1.3E-27 T 14-09-2016 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 Gene3D G3DSA:1.25.40.10 49 289 3.4E-32 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 Pfam PF13181 Tetratricopeptide repeat 62 94 0.0045 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 SMART SM00028 234 267 7.7 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 SMART SM00028 96 129 2.0E-4 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 SMART SM00028 62 95 0.0037 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 SMART SM00028 130 163 430.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 SUPERFAMILY SSF48452 27 283 1.35E-76 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS19930 a22727963e1f7dbe8a2bf5c05d6fa5ae 294 PIRSF PIRSF004654 1 292 1.5E-117 T 14-09-2016 IPR023605 Lipoprotein NlpI PAJ_RS12265 0beb0fcf76bf00c3eb1a6e9e76b0a7e5 252 Pfam PF00005 ABC transporter 17 164 1.6E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS12265 0beb0fcf76bf00c3eb1a6e9e76b0a7e5 252 Gene3D G3DSA:3.40.50.300 1 226 1.3E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12265 0beb0fcf76bf00c3eb1a6e9e76b0a7e5 252 PANTHER PTHR24220:SF471 3 250 2.5E-129 T 14-09-2016 PAJ_RS12265 0beb0fcf76bf00c3eb1a6e9e76b0a7e5 252 PANTHER PTHR24220 3 250 2.5E-129 T 14-09-2016 PAJ_RS12265 0beb0fcf76bf00c3eb1a6e9e76b0a7e5 252 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS12265 0beb0fcf76bf00c3eb1a6e9e76b0a7e5 252 SUPERFAMILY SSF52540 1 225 4.88E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12265 0beb0fcf76bf00c3eb1a6e9e76b0a7e5 252 SMART SM00382 26 213 9.5E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 Gene3D G3DSA:3.40.190.10 92 196 2.5E-40 T 14-09-2016 PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 PANTHER PTHR30579:SF2 1 296 3.8E-157 T 14-09-2016 PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 PANTHER PTHR30579 1 296 3.8E-157 T 14-09-2016 PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 SUPERFAMILY SSF53850 92 289 2.71E-21 T 14-09-2016 PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 SUPERFAMILY SSF46785 4 110 2.72E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 Pfam PF03466 LysR substrate binding domain 93 288 1.2E-15 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 296 57.671 T 14-09-2016 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 5.8E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 5 293 9.1E-112 T 14-09-2016 IPR017685 HTH-type transcriptional regulator ArgP PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 9.1E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 9.1E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 9.1E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13370 f5160e4ff065d0f8524dd7dcfb4a0bd3 300 Gene3D G3DSA:1.10.10.10 1 73 4.7E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16605 8e289163f2b656eadc7267b60afb359b 376 PANTHER PTHR18964:SF112 61 371 1.6E-49 T 14-09-2016 PAJ_RS16605 8e289163f2b656eadc7267b60afb359b 376 SUPERFAMILY SSF46785 13 79 1.17E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16605 8e289163f2b656eadc7267b60afb359b 376 PANTHER PTHR18964 61 371 1.6E-49 T 14-09-2016 PAJ_RS16605 8e289163f2b656eadc7267b60afb359b 376 Gene3D G3DSA:3.30.420.40 80 223 5.7E-28 T 14-09-2016 PAJ_RS16605 8e289163f2b656eadc7267b60afb359b 376 Pfam PF00480 ROK family 87 243 1.6E-18 T 14-09-2016 IPR000600 ROK family PAJ_RS16605 8e289163f2b656eadc7267b60afb359b 376 Pfam PF13412 Winged helix-turn-helix DNA-binding 13 58 3.6E-5 T 14-09-2016 PAJ_RS16605 8e289163f2b656eadc7267b60afb359b 376 SUPERFAMILY SSF53067 86 371 2.54E-31 T 14-09-2016 PAJ_RS16605 8e289163f2b656eadc7267b60afb359b 376 Gene3D G3DSA:1.10.10.10 18 79 5.8E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16605 8e289163f2b656eadc7267b60afb359b 376 Gene3D G3DSA:3.30.420.40 224 332 2.3E-16 T 14-09-2016 PAJ_RS11920 85a033f44014099012d786f530feac75 165 PANTHER PTHR33221 2 152 1.6E-71 T 14-09-2016 PAJ_RS11920 85a033f44014099012d786f530feac75 165 SUPERFAMILY SSF46785 2 133 4.99E-36 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11920 85a033f44014099012d786f530feac75 165 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 7.5E-47 T 14-09-2016 IPR000944 Transcription regulator Rrf2-type PAJ_RS11920 85a033f44014099012d786f530feac75 165 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 3.5E-67 T 14-09-2016 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 PAJ_RS11920 85a033f44014099012d786f530feac75 165 PANTHER PTHR33221:SF1 2 152 1.6E-71 T 14-09-2016 PAJ_RS11920 85a033f44014099012d786f530feac75 165 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 14-09-2016 IPR030489 Transcription regulator Rrf2-type, conserved site PAJ_RS11920 85a033f44014099012d786f530feac75 165 Gene3D G3DSA:1.10.10.10 1 134 5.2E-32 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11920 85a033f44014099012d786f530feac75 165 Pfam PF02082 Transcriptional regulator 1 83 1.4E-27 T 14-09-2016 IPR000944 Transcription regulator Rrf2-type PAJ_RS11920 85a033f44014099012d786f530feac75 165 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 1 164 48.668 T 14-09-2016 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 SUPERFAMILY SSF63380 3 97 5.02E-21 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 Pfam PF00970 Oxidoreductase FAD-binding domain 6 95 1.4E-4 T 14-09-2016 IPR008333 Oxidoreductase, FAD-binding domain PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 PANTHER PTHR19370:SF119 4 233 1.1E-129 T 14-09-2016 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 Gene3D G3DSA:3.40.50.80 100 231 4.6E-38 T 14-09-2016 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 6.3E-13 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 91 100 6.3E-13 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 107 126 6.3E-13 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 6.3E-13 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 6.3E-13 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 PANTHER PTHR19370 4 233 1.1E-129 T 14-09-2016 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 Pfam PF00175 Oxidoreductase NAD-binding domain 108 211 1.3E-21 T 14-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 Gene3D G3DSA:2.40.30.10 3 98 1.0E-28 T 14-09-2016 PAJ_RS18560 40eff8ecee241e18db617e83ff8075e1 233 SUPERFAMILY SSF52343 100 231 1.31E-35 T 14-09-2016 PAJ_RS08345 3b997e9f64affd37252a7d36aabc7605 410 SUPERFAMILY SSF103473 10 404 2.75E-51 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS08345 3b997e9f64affd37252a7d36aabc7605 410 Gene3D G3DSA:1.20.1250.20 20 198 1.2E-26 T 14-09-2016 PAJ_RS08345 3b997e9f64affd37252a7d36aabc7605 410 ProSitePatterns PS00216 Sugar transport proteins signature 1. 71 87 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS08345 3b997e9f64affd37252a7d36aabc7605 410 PANTHER PTHR23502:SF43 13 403 3.1E-161 T 14-09-2016 PAJ_RS08345 3b997e9f64affd37252a7d36aabc7605 410 Pfam PF07690 Major Facilitator Superfamily 26 333 3.9E-32 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS08345 3b997e9f64affd37252a7d36aabc7605 410 PANTHER PTHR23502 13 403 3.1E-161 T 14-09-2016 PAJ_RS08345 3b997e9f64affd37252a7d36aabc7605 410 Gene3D G3DSA:1.20.1250.20 213 406 1.3E-6 T 14-09-2016 PAJ_RS04650 259d5ec870704e75b39c9467454ee663 399 PANTHER PTHR30489:SF8 1 399 1.9E-228 T 14-09-2016 PAJ_RS04650 259d5ec870704e75b39c9467454ee663 399 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 399 2.1E-140 T 14-09-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 PAJ_RS04650 259d5ec870704e75b39c9467454ee663 399 Pfam PF02687 FtsX-like permease family 270 392 3.2E-16 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PAJ_RS04650 259d5ec870704e75b39c9467454ee663 399 Pfam PF12704 MacB-like periplasmic core domain 27 208 3.6E-12 T 14-09-2016 IPR025857 MacB-like periplasmic core domain PAJ_RS04650 259d5ec870704e75b39c9467454ee663 399 PANTHER PTHR30489 1 399 1.9E-228 T 14-09-2016 PAJ_RS07380 059dc99ee4ab4d4cb078c214bf1912c7 165 Hamap MF_00546 Acid shock protein [asr]. 1 154 14.737 T 14-09-2016 IPR023497 Acid shock protein PAJ_RS04665 b6e060d154e20df357571940e405e2bb 277 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 43 273 60.277 T 14-09-2016 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 PAJ_RS04665 b6e060d154e20df357571940e405e2bb 277 Pfam PF02146 Sir2 family 50 223 4.9E-51 T 14-09-2016 IPR003000 Sirtuin family GO:0070403 PAJ_RS04665 b6e060d154e20df357571940e405e2bb 277 Gene3D G3DSA:3.30.1600.10 59 98 9.1E-28 T 14-09-2016 IPR026591 Sirtuin family, catalytic core small domain PAJ_RS04665 b6e060d154e20df357571940e405e2bb 277 Gene3D G3DSA:3.30.1600.10 151 195 9.1E-28 T 14-09-2016 IPR026591 Sirtuin family, catalytic core small domain PAJ_RS04665 b6e060d154e20df357571940e405e2bb 277 SUPERFAMILY SSF52467 44 272 4.0E-75 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS04665 b6e060d154e20df357571940e405e2bb 277 PANTHER PTHR11085 44 271 1.5E-81 T 14-09-2016 IPR003000 Sirtuin family GO:0070403 PAJ_RS04665 b6e060d154e20df357571940e405e2bb 277 Gene3D G3DSA:3.40.50.1220 108 150 1.0E-40 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS04665 b6e060d154e20df357571940e405e2bb 277 Gene3D G3DSA:3.40.50.1220 202 268 1.0E-40 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS04665 b6e060d154e20df357571940e405e2bb 277 Gene3D G3DSA:3.40.50.1220 44 58 1.0E-40 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain PAJ_RS11625 cd9a0adf3d54af14d376d604f9b1616e 341 Gene3D G3DSA:3.40.50.2300 54 173 6.9E-41 T 14-09-2016 PAJ_RS11625 cd9a0adf3d54af14d376d604f9b1616e 341 SMART SM00354 1 71 1.4E-11 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS11625 cd9a0adf3d54af14d376d604f9b1616e 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 48 3.4E-7 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS11625 cd9a0adf3d54af14d376d604f9b1616e 341 Gene3D G3DSA:3.40.50.2300 174 306 7.2E-40 T 14-09-2016 PAJ_RS11625 cd9a0adf3d54af14d376d604f9b1616e 341 SUPERFAMILY SSF53822 59 312 6.34E-60 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS11625 cd9a0adf3d54af14d376d604f9b1616e 341 SUPERFAMILY SSF47413 3 59 2.06E-11 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS11625 cd9a0adf3d54af14d376d604f9b1616e 341 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 60 306 2.8E-28 T 14-09-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain PAJ_RS11625 cd9a0adf3d54af14d376d604f9b1616e 341 PANTHER PTHR30146 1 305 1.2E-81 T 14-09-2016 PAJ_RS11625 cd9a0adf3d54af14d376d604f9b1616e 341 Gene3D G3DSA:1.10.260.40 6 53 3.8E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS15610 c62cc65fc25254cde3c26ae829297700 341 Gene3D G3DSA:3.40.190.10 33 127 4.9E-17 T 14-09-2016 PAJ_RS15610 c62cc65fc25254cde3c26ae829297700 341 Gene3D G3DSA:3.40.190.10 225 250 4.9E-17 T 14-09-2016 PAJ_RS15610 c62cc65fc25254cde3c26ae829297700 341 SUPERFAMILY SSF53850 27 256 1.63E-49 T 14-09-2016 PAJ_RS15610 c62cc65fc25254cde3c26ae829297700 341 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 253 1.5E-31 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS15610 c62cc65fc25254cde3c26ae829297700 341 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS15610 c62cc65fc25254cde3c26ae829297700 341 Gene3D G3DSA:3.40.190.10 128 224 5.6E-16 T 14-09-2016 PAJ_RS15610 c62cc65fc25254cde3c26ae829297700 341 PANTHER PTHR30085 1 310 1.6E-184 T 14-09-2016 PAJ_RS15610 c62cc65fc25254cde3c26ae829297700 341 SMART SM00062 36 265 1.3E-56 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS15610 c62cc65fc25254cde3c26ae829297700 341 PANTHER PTHR30085:SF5 1 310 1.6E-184 T 14-09-2016 PAJ_RS00425 e86fbbf44aa167f223caf00cef63e67b 319 PIRSF PIRSF025414 1 319 6.0E-128 T 14-09-2016 IPR016828 Alpha-L-arabinofuranosidase KEGG: 00520+3.2.1.55|UniPathway: UPA00667 PAJ_RS00425 e86fbbf44aa167f223caf00cef63e67b 319 Pfam PF04616 Glycosyl hydrolases family 43 7 306 1.0E-63 T 14-09-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 PAJ_RS00425 e86fbbf44aa167f223caf00cef63e67b 319 SUPERFAMILY SSF75005 6 313 1.35E-61 T 14-09-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain PAJ_RS00425 e86fbbf44aa167f223caf00cef63e67b 319 PANTHER PTHR22925:SF12 5 311 1.1E-85 T 14-09-2016 PAJ_RS00425 e86fbbf44aa167f223caf00cef63e67b 319 PANTHER PTHR22925 5 311 1.1E-85 T 14-09-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 PAJ_RS00425 e86fbbf44aa167f223caf00cef63e67b 319 Gene3D G3DSA:2.115.10.20 3 316 1.3E-87 T 14-09-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain PAJ_RS00435 6d5ab73adefbf32ab6ee74f9d4abad37 451 PANTHER PTHR11785:SF26 2 447 0.0 T 14-09-2016 PAJ_RS00435 6d5ab73adefbf32ab6ee74f9d4abad37 451 PIRSF PIRSF006060 1 450 3.2E-77 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS00435 6d5ab73adefbf32ab6ee74f9d4abad37 451 Pfam PF00324 Amino acid permease 17 450 4.9E-121 T 14-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PAJ_RS00435 6d5ab73adefbf32ab6ee74f9d4abad37 451 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 14-09-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PAJ_RS00435 6d5ab73adefbf32ab6ee74f9d4abad37 451 PANTHER PTHR11785 2 447 0.0 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 11 197 9.3E-27 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 Gene3D G3DSA:3.50.50.60 175 218 7.6E-5 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 Gene3D G3DSA:3.50.50.60 4 174 1.1E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 Gene3D G3DSA:3.50.50.60 374 412 1.1E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 SUPERFAMILY SSF51905 168 407 2.43E-6 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PANTHER PTHR23023:SF4 230 287 1.1E-59 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 SUPERFAMILY SSF51905 7 225 8.17E-34 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PANTHER PTHR23023:SF4 6 208 1.1E-59 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PANTHER PTHR23023 230 287 1.1E-59 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PANTHER PTHR23023 6 208 1.1E-59 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 2.9E-10 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 130 139 2.9E-10 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 2.9E-10 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 127 145 2.4E-6 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 2.4E-6 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 2.4E-6 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PANTHER PTHR23023 335 403 1.1E-59 T 14-09-2016 PAJ_RS00960 5f77be7abdbf5527e5419753e1d9fc6c 421 PANTHER PTHR23023:SF4 335 403 1.1E-59 T 14-09-2016 PAJ_RS10575 848d43160c1f3682e25e76311fe3002d 506 PANTHER PTHR22773:SF40 1 506 8.3E-196 T 14-09-2016 PAJ_RS10575 848d43160c1f3682e25e76311fe3002d 506 PANTHER PTHR22773 1 506 8.3E-196 T 14-09-2016 PAJ_RS10575 848d43160c1f3682e25e76311fe3002d 506 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 1.8E-39 T 14-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PAJ_RS10575 848d43160c1f3682e25e76311fe3002d 506 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 249 273 1.8E-39 T 14-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PAJ_RS10575 848d43160c1f3682e25e76311fe3002d 506 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 337 356 1.8E-39 T 14-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PAJ_RS10575 848d43160c1f3682e25e76311fe3002d 506 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 1.8E-39 T 14-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PAJ_RS10575 848d43160c1f3682e25e76311fe3002d 506 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 1.8E-39 T 14-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PAJ_RS10575 848d43160c1f3682e25e76311fe3002d 506 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 496 5.9E-184 T 14-09-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 PAJ_RS10575 848d43160c1f3682e25e76311fe3002d 506 Pfam PF00361 Proton-conducting membrane transporter 134 431 2.1E-70 T 14-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 PAJ_RS19985 25505fc13ccffcc80c40268ef2e4aad0 155 SUPERFAMILY SSF102114 13 103 1.28E-6 T 14-09-2016 PAJ_RS19985 25505fc13ccffcc80c40268ef2e4aad0 155 PANTHER PTHR30352 1 151 1.9E-57 T 14-09-2016 PAJ_RS19985 25505fc13ccffcc80c40268ef2e4aad0 155 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 3 154 4.2E-57 T 14-09-2016 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 KEGG: 00351+1.97.1.-|KEGG: 00361+1.97.1.-|KEGG: 00363+1.97.1.-|KEGG: 00625+1.97.1.- PAJ_RS19985 25505fc13ccffcc80c40268ef2e4aad0 155 ProSitePatterns PS01087 Radical activating enzymes signature. 15 36 - T 14-09-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 PAJ_RS19985 25505fc13ccffcc80c40268ef2e4aad0 155 Gene3D G3DSA:3.20.20.70 23 108 9.8E-6 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS19985 25505fc13ccffcc80c40268ef2e4aad0 155 PIRSF PIRSF000368 1 155 5.4E-56 T 14-09-2016 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 KEGG: 00351+1.97.1.-|KEGG: 00361+1.97.1.-|KEGG: 00363+1.97.1.-|KEGG: 00625+1.97.1.- PAJ_RS19985 25505fc13ccffcc80c40268ef2e4aad0 155 Pfam PF13353 4Fe-4S single cluster domain 13 151 3.9E-48 T 14-09-2016 PAJ_RS19985 25505fc13ccffcc80c40268ef2e4aad0 155 PANTHER PTHR30352:SF2 1 151 1.9E-57 T 14-09-2016 PAJ_RS00150 c28a383f46b9c03c6f321fe4073e4071 330 PANTHER PTHR30004:SF5 1 330 4.9E-217 T 14-09-2016 PAJ_RS00150 c28a383f46b9c03c6f321fe4073e4071 330 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 3 325 35.565 T 14-09-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 PAJ_RS00150 c28a383f46b9c03c6f321fe4073e4071 330 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 324 1.5E-130 T 14-09-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 PAJ_RS00150 c28a383f46b9c03c6f321fe4073e4071 330 Gene3D G3DSA:3.40.718.10 5 327 4.4E-136 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS00150 c28a383f46b9c03c6f321fe4073e4071 330 PANTHER PTHR30004 1 330 4.9E-217 T 14-09-2016 PAJ_RS00150 c28a383f46b9c03c6f321fe4073e4071 330 SUPERFAMILY SSF53659 5 327 3.2E-115 T 14-09-2016 PAJ_RS00150 c28a383f46b9c03c6f321fe4073e4071 330 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 34 321 2.4E-108 T 14-09-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 Gene3D G3DSA:1.10.540.10 95 234 1.5E-32 T 14-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 PANTHER PTHR10909:SF321 49 531 1.5E-303 T 14-09-2016 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 PANTHER PTHR10909 49 531 1.5E-303 T 14-09-2016 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 SUPERFAMILY SSF56645 119 355 2.36E-44 T 14-09-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 Gene3D G3DSA:1.20.140.10 349 507 7.6E-24 T 14-09-2016 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 360 507 9.7E-14 T 14-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 Gene3D G3DSA:2.40.110.10 237 348 2.9E-16 T 14-09-2016 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 Pfam PF09317 Domain of unknown function (DUF1974) 514 792 2.7E-114 T 14-09-2016 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.-|UniPathway: UPA00659 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 SUPERFAMILY SSF47203 360 507 1.45E-22 T 14-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 147 233 2.1E-16 T 14-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PAJ_RS01095 fb7474b5d5c1ed3565ca72c08b8cf2e4 815 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 237 328 5.4E-9 T 14-09-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PAJ_RS15940 83683e696587de6b9f5f7d687bb9c4d3 601 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 283 6.9E-90 T 14-09-2016 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 PAJ_RS15940 83683e696587de6b9f5f7d687bb9c4d3 601 SUPERFAMILY SSF51735 402 529 1.0E-29 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15940 83683e696587de6b9f5f7d687bb9c4d3 601 PANTHER PTHR16254 1 557 5.9E-258 T 14-09-2016 PAJ_RS15940 83683e696587de6b9f5f7d687bb9c4d3 601 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 2 598 47.466 T 14-09-2016 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 PAJ_RS15940 83683e696587de6b9f5f7d687bb9c4d3 601 Pfam PF02254 TrkA-N domain 403 514 2.3E-25 T 14-09-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 PAJ_RS15940 83683e696587de6b9f5f7d687bb9c4d3 601 Pfam PF00999 Sodium/hydrogen exchanger family 12 373 1.0E-69 T 14-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PAJ_RS15940 83683e696587de6b9f5f7d687bb9c4d3 601 Gene3D G3DSA:3.40.50.720 397 531 2.6E-37 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15940 83683e696587de6b9f5f7d687bb9c4d3 601 PANTHER PTHR16254:SF6 1 557 5.9E-258 T 14-09-2016 PAJ_RS14990 4d428d015117bf15b9d5f77458382d5f 434 PANTHER PTHR11662 1 427 2.6E-268 T 14-09-2016 PAJ_RS14990 4d428d015117bf15b9d5f77458382d5f 434 Gene3D G3DSA:1.20.1250.20 225 416 1.5E-18 T 14-09-2016 PAJ_RS14990 4d428d015117bf15b9d5f77458382d5f 434 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 17 411 1.8E-119 T 14-09-2016 IPR004744 D-galactonate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS14990 4d428d015117bf15b9d5f77458382d5f 434 PANTHER PTHR11662:SF285 1 427 2.6E-268 T 14-09-2016 PAJ_RS14990 4d428d015117bf15b9d5f77458382d5f 434 Pfam PF07690 Major Facilitator Superfamily 16 287 2.7E-49 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS14990 4d428d015117bf15b9d5f77458382d5f 434 Gene3D G3DSA:1.20.1250.20 7 199 1.1E-45 T 14-09-2016 PAJ_RS14990 4d428d015117bf15b9d5f77458382d5f 434 SUPERFAMILY SSF103473 3 414 4.05E-79 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS16595 5dede3c7800d3670b8c294b35b164ec9 303 Pfam PF12706 Beta-lactamase superfamily domain 200 269 4.4E-7 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS16595 5dede3c7800d3670b8c294b35b164ec9 303 Pfam PF12706 Beta-lactamase superfamily domain 34 151 3.8E-11 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS16595 5dede3c7800d3670b8c294b35b164ec9 303 SMART SM00849 18 199 1.1E-5 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS16595 5dede3c7800d3670b8c294b35b164ec9 303 Gene3D G3DSA:3.60.15.10 3 303 5.7E-90 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS16595 5dede3c7800d3670b8c294b35b164ec9 303 SUPERFAMILY SSF56281 1 303 4.42E-88 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS16595 5dede3c7800d3670b8c294b35b164ec9 303 PANTHER PTHR12553 181 298 7.2E-85 T 14-09-2016 PAJ_RS16595 5dede3c7800d3670b8c294b35b164ec9 303 PANTHER PTHR12553 1 150 7.2E-85 T 14-09-2016 PAJ_RS16595 5dede3c7800d3670b8c294b35b164ec9 303 TIGRFAM TIGR02651 RNase_Z: ribonuclease Z 3 301 6.6E-106 T 14-09-2016 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 PAJ_RS16595 5dede3c7800d3670b8c294b35b164ec9 303 Hamap MF_01818 Ribonuclease BN [rbn]. 1 303 38.974 T 14-09-2016 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 PAJ_RS01660 5e6718ff90958604d6fde010f5baeea2 346 Pfam PF00107 Zinc-binding dehydrogenase 183 307 1.7E-28 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS01660 5e6718ff90958604d6fde010f5baeea2 346 Gene3D G3DSA:3.90.180.10 1 176 3.1E-71 T 14-09-2016 IPR011032 GroES-like PAJ_RS01660 5e6718ff90958604d6fde010f5baeea2 346 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 139 6.8E-33 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS01660 5e6718ff90958604d6fde010f5baeea2 346 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 68 82 - T 14-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PAJ_RS01660 5e6718ff90958604d6fde010f5baeea2 346 PANTHER PTHR11695:SF280 21 345 9.6E-141 T 14-09-2016 PAJ_RS01660 5e6718ff90958604d6fde010f5baeea2 346 SUPERFAMILY SSF50129 1 188 3.96E-58 T 14-09-2016 IPR011032 GroES-like PAJ_RS01660 5e6718ff90958604d6fde010f5baeea2 346 SUPERFAMILY SSF51735 148 313 3.71E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS01660 5e6718ff90958604d6fde010f5baeea2 346 SMART SM00829 18 342 5.8E-9 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS01660 5e6718ff90958604d6fde010f5baeea2 346 PANTHER PTHR11695 21 345 9.6E-141 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS01660 5e6718ff90958604d6fde010f5baeea2 346 Gene3D G3DSA:3.40.50.720 177 292 1.6E-30 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16850 12a37742403af32ba26d082979d69c4a 418 SUPERFAMILY SSF56059 104 326 3.01E-39 T 14-09-2016 PAJ_RS16850 12a37742403af32ba26d082979d69c4a 418 Gene3D G3DSA:3.30.470.20 105 316 6.6E-31 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS16850 12a37742403af32ba26d082979d69c4a 418 Pfam PF13535 ATP-grasp domain 147 296 2.0E-16 T 14-09-2016 PAJ_RS16850 12a37742403af32ba26d082979d69c4a 418 PANTHER PTHR23132 101 307 5.4E-20 T 14-09-2016 PAJ_RS16850 12a37742403af32ba26d082979d69c4a 418 PANTHER PTHR23132:SF9 101 307 5.4E-20 T 14-09-2016 PAJ_RS18970 a53be485ae64f399f087a0832fb57f91 402 PANTHER PTHR11879 1 402 1.6E-297 T 14-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PAJ_RS18970 a53be485ae64f399f087a0832fb57f91 402 PRINTS PR00799 Aspartate aminotransferase signature 279 304 1.4E-37 T 14-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PAJ_RS18970 a53be485ae64f399f087a0832fb57f91 402 PRINTS PR00799 Aspartate aminotransferase signature 212 224 1.4E-37 T 14-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PAJ_RS18970 a53be485ae64f399f087a0832fb57f91 402 PRINTS PR00799 Aspartate aminotransferase signature 181 200 1.4E-37 T 14-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PAJ_RS18970 a53be485ae64f399f087a0832fb57f91 402 PRINTS PR00799 Aspartate aminotransferase signature 347 365 1.4E-37 T 14-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PAJ_RS18970 a53be485ae64f399f087a0832fb57f91 402 SUPERFAMILY SSF53383 5 401 4.02E-116 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS18970 a53be485ae64f399f087a0832fb57f91 402 Pfam PF00155 Aminotransferase class I and II 32 398 3.7E-83 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS18970 a53be485ae64f399f087a0832fb57f91 402 PANTHER PTHR11879:SF7 1 402 1.6E-297 T 14-09-2016 PAJ_RS18970 a53be485ae64f399f087a0832fb57f91 402 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 249 262 - T 14-09-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 PAJ_RS18970 a53be485ae64f399f087a0832fb57f91 402 Gene3D G3DSA:3.40.640.10 51 321 5.8E-105 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS03055 729b29121f3ff99e71150fbc2c2d64d0 534 Pfam PF01384 Phosphate transporter family 247 524 2.8E-44 T 14-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 PAJ_RS03055 729b29121f3ff99e71150fbc2c2d64d0 534 Pfam PF01384 Phosphate transporter family 79 233 1.4E-35 T 14-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 PAJ_RS03055 729b29121f3ff99e71150fbc2c2d64d0 534 PANTHER PTHR11101:SF61 51 534 4.8E-239 T 14-09-2016 PAJ_RS03055 729b29121f3ff99e71150fbc2c2d64d0 534 PANTHER PTHR11101 51 534 4.8E-239 T 14-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 PAJ_RS18890 e184710cd9b681d8e9177fa07a88fbf2 136 PANTHER PTHR37819:SF1 1 136 1.4E-48 T 14-09-2016 PAJ_RS18890 e184710cd9b681d8e9177fa07a88fbf2 136 PANTHER PTHR37819 1 136 1.4E-48 T 14-09-2016 PAJ_RS18890 e184710cd9b681d8e9177fa07a88fbf2 136 Pfam PF06146 Phosphate-starvation-inducible E 61 123 3.6E-16 T 14-09-2016 IPR020948 Phosphate-starvation-induced PsiE-like PAJ_RS18890 e184710cd9b681d8e9177fa07a88fbf2 136 Hamap MF_01048 Protein PsiE [psiE]. 1 136 24.488 T 14-09-2016 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 PAJ_RS18890 e184710cd9b681d8e9177fa07a88fbf2 136 PIRSF PIRSF029598 1 136 3.1E-48 T 14-09-2016 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 PAJ_RS09880 93464ac4a49b6d8feec1aa2ad532a76f 251 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS09880 93464ac4a49b6d8feec1aa2ad532a76f 251 SMART SM00382 58 232 4.9E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09880 93464ac4a49b6d8feec1aa2ad532a76f 251 PANTHER PTHR24220:SF476 6 16 1.2E-87 T 14-09-2016 PAJ_RS09880 93464ac4a49b6d8feec1aa2ad532a76f 251 SUPERFAMILY SSF52540 46 246 3.08E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09880 93464ac4a49b6d8feec1aa2ad532a76f 251 PANTHER PTHR24220:SF476 46 244 1.2E-87 T 14-09-2016 PAJ_RS09880 93464ac4a49b6d8feec1aa2ad532a76f 251 Pfam PF00005 ABC transporter 49 180 2.3E-23 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09880 93464ac4a49b6d8feec1aa2ad532a76f 251 PANTHER PTHR24220 46 244 1.2E-87 T 14-09-2016 PAJ_RS09880 93464ac4a49b6d8feec1aa2ad532a76f 251 PANTHER PTHR24220 6 16 1.2E-87 T 14-09-2016 PAJ_RS09880 93464ac4a49b6d8feec1aa2ad532a76f 251 Gene3D G3DSA:3.40.50.300 4 242 8.1E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10350 a6ff1383f45f172009950f7692f65bba 74 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 9.0E-26 T 14-09-2016 IPR009857 Uncharacterised protein family UPF0352 PAJ_RS10350 a6ff1383f45f172009950f7692f65bba 74 SUPERFAMILY SSF158651 1 72 1.13E-29 T 14-09-2016 PAJ_RS10350 a6ff1383f45f172009950f7692f65bba 74 PIRSF PIRSF006188 1 72 4.1E-32 T 14-09-2016 IPR009857 Uncharacterised protein family UPF0352 PAJ_RS10350 a6ff1383f45f172009950f7692f65bba 74 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 22.099 T 14-09-2016 IPR009857 Uncharacterised protein family UPF0352 PAJ_RS10350 a6ff1383f45f172009950f7692f65bba 74 Pfam PF07208 Protein of unknown function (DUF1414) 27 69 1.6E-23 T 14-09-2016 IPR009857 Uncharacterised protein family UPF0352 PAJ_RS10350 a6ff1383f45f172009950f7692f65bba 74 Gene3D G3DSA:1.10.3390.10 1 72 7.7E-36 T 14-09-2016 IPR023202 YejL-like domain PAJ_RS09395 294fe27d8f27fd437962f2f7070688d1 256 SUPERFAMILY SSF56281 1 248 6.42E-39 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS09395 294fe27d8f27fd437962f2f7070688d1 256 Pfam PF12706 Beta-lactamase superfamily domain 48 219 5.0E-19 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS09395 294fe27d8f27fd437962f2f7070688d1 256 PANTHER PTHR12553 1 251 2.5E-38 T 14-09-2016 PAJ_RS09395 294fe27d8f27fd437962f2f7070688d1 256 TIGRFAM TIGR03307 PhnP: phosphonate metabolism protein PhnP 1 245 6.5E-108 T 14-09-2016 IPR017693 Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 KEGG: 00440+3.1.4.55 PAJ_RS09395 294fe27d8f27fd437962f2f7070688d1 256 SMART SM00849 36 222 9.9E-4 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS09395 294fe27d8f27fd437962f2f7070688d1 256 Gene3D G3DSA:3.60.15.10 1 248 3.8E-57 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS09395 294fe27d8f27fd437962f2f7070688d1 256 PANTHER PTHR12553:SF7 1 251 2.5E-38 T 14-09-2016 PAJ_RS07110 0a9ffbbd317671fb3577e59a51e83deb 371 Pfam PF13657 HipA N-terminal domain 6 103 1.2E-14 T 14-09-2016 IPR017508 HipA, N-terminal subdomain 1 PAJ_RS07110 0a9ffbbd317671fb3577e59a51e83deb 371 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 4 103 5.6E-17 T 14-09-2016 IPR017508 HipA, N-terminal subdomain 1 PAJ_RS07110 0a9ffbbd317671fb3577e59a51e83deb 371 PANTHER PTHR37419:SF3 132 364 1.1E-48 T 14-09-2016 PAJ_RS07110 0a9ffbbd317671fb3577e59a51e83deb 371 Pfam PF07804 HipA-like C-terminal domain 184 334 1.5E-13 T 14-09-2016 IPR012893 HipA-like, C-terminal PAJ_RS07110 0a9ffbbd317671fb3577e59a51e83deb 371 PANTHER PTHR37419 132 364 1.1E-48 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 Gene3D G3DSA:3.30.70.1430 39 139 2.1E-34 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 SUPERFAMILY SSF82693 39 132 4.71E-27 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PANTHER PTHR32063:SF32 1 1033 0.0 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PANTHER PTHR32063 1 1033 0.0 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 SUPERFAMILY SSF82714 723 809 3.27E-22 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 Gene3D G3DSA:3.30.70.1430 568 672 1.7E-31 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 3.0E-105 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 3.0E-105 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 3.0E-105 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 3.0E-105 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 3.0E-105 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 3.0E-105 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.0E-105 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 3.0E-105 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.0E-105 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 Gene3D G3DSA:1.10.3850.10 815 1028 7.9E-54 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 Gene3D G3DSA:1.10.3850.10 279 498 2.4E-54 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 SUPERFAMILY SSF82693 566 672 8.89E-28 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 Gene3D G3DSA:3.30.2090.10 722 811 5.2E-27 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 Gene3D G3DSA:3.30.2090.10 181 275 1.3E-25 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 SUPERFAMILY SSF82714 182 272 9.94E-22 T 14-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1036 0.0 T 14-09-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 SUPERFAMILY SSF82693 137 182 3.31E-23 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 SUPERFAMILY SSF82693 274 330 3.31E-23 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 SUPERFAMILY SSF82866 807 1030 5.23E-43 T 14-09-2016 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 14-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11515 4efa0da28ca10b14de45f8a80b0a1bb4 1038 SUPERFAMILY SSF82866 299 497 5.75E-45 T 14-09-2016 PAJ_RS18385 36e62ab60a38dfac37ceadc8bf741ee6 852 Pfam PF12633 Adenylate cyclase NT domain 5 200 8.0E-78 T 14-09-2016 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 PAJ_RS18385 36e62ab60a38dfac37ceadc8bf741ee6 852 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 600 614 - T 14-09-2016 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 PAJ_RS18385 36e62ab60a38dfac37ceadc8bf741ee6 852 PANTHER PTHR38760 2 852 0.0 T 14-09-2016 PAJ_RS18385 36e62ab60a38dfac37ceadc8bf741ee6 852 PIRSF PIRSF001444 1 852 0.0 T 14-09-2016 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 PAJ_RS18385 36e62ab60a38dfac37ceadc8bf741ee6 852 Pfam PF01295 Adenylate cyclase, class-I 228 827 2.7E-259 T 14-09-2016 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 PAJ_RS18385 36e62ab60a38dfac37ceadc8bf741ee6 852 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 242 253 - T 14-09-2016 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 PAJ_RS04975 b5005d3b50bf8188e8839ff8d043bc90 320 PANTHER PTHR23024 62 308 1.7E-59 T 14-09-2016 PAJ_RS04975 b5005d3b50bf8188e8839ff8d043bc90 320 SUPERFAMILY SSF53474 46 300 2.7E-57 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS04975 b5005d3b50bf8188e8839ff8d043bc90 320 Gene3D G3DSA:3.40.50.1820 8 307 1.1E-74 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS04975 b5005d3b50bf8188e8839ff8d043bc90 320 Pfam PF07859 alpha/beta hydrolase fold 83 292 3.7E-58 T 14-09-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 PAJ_RS00055 59d824e071e21984b47fe90897ed9217 392 PANTHER PTHR30341:SF0 6 392 4.5E-184 T 14-09-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 PAJ_RS00055 59d824e071e21984b47fe90897ed9217 392 Gene3D G3DSA:1.20.1530.10 11 390 1.0E-154 T 14-09-2016 IPR023171 Na/H antiporter domain PAJ_RS00055 59d824e071e21984b47fe90897ed9217 392 Pfam PF06965 Na+/H+ antiporter 1 13 387 8.5E-149 T 14-09-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 PAJ_RS00055 59d824e071e21984b47fe90897ed9217 392 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 11 392 23.321 T 14-09-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 PAJ_RS00055 59d824e071e21984b47fe90897ed9217 392 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 14 387 1.8E-169 T 14-09-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 PAJ_RS00055 59d824e071e21984b47fe90897ed9217 392 PANTHER PTHR30341 6 392 4.5E-184 T 14-09-2016 PAJ_RS16445 ee6614eb77866875a155fcbd92dfb9cc 501 SUPERFAMILY SSF53720 2 486 6.68E-147 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS16445 ee6614eb77866875a155fcbd92dfb9cc 501 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 485 4.9E-196 T 14-09-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 PAJ_RS16445 ee6614eb77866875a155fcbd92dfb9cc 501 PANTHER PTHR11699:SF188 1 497 0.0 T 14-09-2016 PAJ_RS16445 ee6614eb77866875a155fcbd92dfb9cc 501 PANTHER PTHR11699 1 497 0.0 T 14-09-2016 PAJ_RS16445 ee6614eb77866875a155fcbd92dfb9cc 501 Gene3D G3DSA:3.40.309.10 261 446 1.1E-63 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS16445 ee6614eb77866875a155fcbd92dfb9cc 501 Gene3D G3DSA:3.40.605.10 4 260 2.7E-91 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS16445 ee6614eb77866875a155fcbd92dfb9cc 501 Pfam PF00171 Aldehyde dehydrogenase family 16 480 2.4E-140 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS09760 273f9229098c810680fda3cefdabed19 471 PANTHER PTHR20852 2 468 2.9E-117 T 14-09-2016 PAJ_RS09760 273f9229098c810680fda3cefdabed19 471 SMART SM01230 132 389 3.5E-92 T 14-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS09760 273f9229098c810680fda3cefdabed19 471 Gene3D G3DSA:3.30.590.10 136 457 3.0E-88 T 14-09-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PAJ_RS09760 273f9229098c810680fda3cefdabed19 471 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 270 285 - T 14-09-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS09760 273f9229098c810680fda3cefdabed19 471 Gene3D G3DSA:3.10.20.70 24 135 4.7E-11 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS09760 273f9229098c810680fda3cefdabed19 471 SUPERFAMILY SSF54368 24 131 1.83E-10 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS09760 273f9229098c810680fda3cefdabed19 471 Pfam PF00120 Glutamine synthetase, catalytic domain 133 466 1.1E-98 T 14-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS09760 273f9229098c810680fda3cefdabed19 471 SUPERFAMILY SSF55931 133 468 1.62E-96 T 14-09-2016 PAJ_RS09760 273f9229098c810680fda3cefdabed19 471 PANTHER PTHR20852:SF7 2 468 2.9E-117 T 14-09-2016 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 SUPERFAMILY SSF54980 399 493 1.39E-24 T 14-09-2016 IPR009022 Elongation factor G, III-V domain PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 Pfam PF03144 Elongation factor Tu domain 2 205 275 9.6E-11 T 14-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 Gene3D G3DSA:3.30.70.870 291 369 9.1E-26 T 14-09-2016 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 Gene3D G3DSA:3.40.50.300 2 192 5.7E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 3.6E-301 T 14-09-2016 IPR006297 Elongation factor 4 GO:0005525 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 SUPERFAMILY SSF52540 2 235 3.19E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 PANTHER PTHR23115:SF175 397 595 7.3E-278 T 14-09-2016 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 PANTHER PTHR23115:SF175 2 373 7.3E-278 T 14-09-2016 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 Pfam PF00679 Elongation factor G C-terminus 399 482 6.4E-20 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 Gene3D G3DSA:2.40.30.10 193 289 2.3E-24 T 14-09-2016 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 308.725 T 14-09-2016 IPR006297 Elongation factor 4 GO:0005525 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 3.2E-51 T 14-09-2016 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 SUPERFAMILY SSF54980 292 370 2.48E-18 T 14-09-2016 IPR009022 Elongation factor G, III-V domain PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 PANTHER PTHR23115 397 595 7.3E-278 T 14-09-2016 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 PANTHER PTHR23115 2 373 7.3E-278 T 14-09-2016 PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 8.3E-49 T 14-09-2016 IPR013842 GTP-binding protein LepA, C-terminal PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 Gene3D G3DSA:3.30.70.240 401 489 1.5E-20 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain PAJ_RS12050 37d08d9eccfb59b83f60de487e41101c 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 171 2.2E-16 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 SMART SM01086 773 863 2.4E-14 T 14-09-2016 IPR019489 Clp ATPase, C-terminal PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 SUPERFAMILY SSF52540 550 856 1.16E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 773 848 1.6E-13 T 14-09-2016 IPR019489 Clp ATPase, C-terminal PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 SUPERFAMILY SSF81923 16 128 2.55E-18 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 PANTHER PTHR11638 176 855 0.0 T 14-09-2016 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 224 356 2.6E-9 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 605 623 4.8E-33 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 650 668 4.8E-33 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 679 697 4.8E-33 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 712 726 4.8E-33 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 PANTHER PTHR11638 1 146 0.0 T 14-09-2016 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 PANTHER PTHR11638:SF122 176 855 0.0 T 14-09-2016 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 Gene3D G3DSA:1.10.1780.10 12 152 1.3E-19 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 Pfam PF07724 AAA domain (Cdc48 subfamily) 600 765 3.6E-39 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 Gene3D G3DSA:1.10.8.60 366 449 4.9E-26 T 14-09-2016 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 Gene3D G3DSA:3.40.50.300 557 784 1.2E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 SUPERFAMILY SSF52540 182 502 8.09E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 Gene3D G3DSA:3.40.50.300 181 363 1.7E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 315 327 - T 14-09-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 SMART SM00382 219 364 2.1E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 SMART SM00382 601 743 1.0E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 14 857 0.0 T 14-09-2016 IPR017729 Type VI secretion system, ATPase ClpV1 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 Gene3D G3DSA:1.10.8.60 785 864 4.3E-11 T 14-09-2016 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 PANTHER PTHR11638:SF122 1 146 0.0 T 14-09-2016 PAJ_RS09215 cc94e0dd2bde065b0290f04d905eec63 869 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 27 75 4.9E-5 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 PAJ_RS10285 9f93f8a2eeb75f084effc5a137df3bb6 233 Hamap MF_01945 Lipid A 1-diphosphate synthase [lpxT]. 2 233 40.982 T 14-09-2016 IPR032908 Lipid A 1-diphosphate synthase GO:0005886|GO:0043165|GO:0050380 UniPathway: UPA00030 PAJ_RS10285 9f93f8a2eeb75f084effc5a137df3bb6 233 Pfam PF01569 PAP2 superfamily 141 211 2.3E-8 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS10285 9f93f8a2eeb75f084effc5a137df3bb6 233 SUPERFAMILY SSF48317 52 223 9.55E-19 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS10285 9f93f8a2eeb75f084effc5a137df3bb6 233 SMART SM00014 95 210 4.3E-10 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS10285 9f93f8a2eeb75f084effc5a137df3bb6 233 Gene3D G3DSA:1.20.144.10 24 212 2.4E-11 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS15340 47b200911e155a4fed480886f6accb54 108 SUPERFAMILY SSF159871 3 98 5.49E-17 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS15340 47b200911e155a4fed480886f6accb54 108 Gene3D G3DSA:3.30.1660.10 32 98 1.8E-16 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS15340 47b200911e155a4fed480886f6accb54 108 Pfam PF07338 Protein of unknown function (DUF1471) 46 98 1.1E-17 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS09420 e556d860c81f8a68e57ac165571250c2 282 PIRSF PIRSF011468 1 282 2.1E-165 T 14-09-2016 IPR010306 Phosphonate metabolism PhnJ GO:0016829|GO:0019700|GO:0042916 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399 PAJ_RS09420 e556d860c81f8a68e57ac165571250c2 282 Pfam PF06007 Phosphonate metabolism protein PhnJ 6 277 4.8E-147 T 14-09-2016 IPR010306 Phosphonate metabolism PhnJ GO:0016829|GO:0019700|GO:0042916 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399 PAJ_RS00900 8e915469147fca774237fedacd690e39 243 PANTHER PTHR30231 1 242 5.7E-148 T 14-09-2016 PAJ_RS00900 8e915469147fca774237fedacd690e39 243 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 7 242 3.9E-94 T 14-09-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00900 8e915469147fca774237fedacd690e39 243 Pfam PF00929 Exonuclease 9 175 7.6E-38 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PAJ_RS00900 8e915469147fca774237fedacd690e39 243 Gene3D G3DSA:3.30.420.10 4 185 6.5E-64 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS00900 8e915469147fca774237fedacd690e39 243 SMART SM00479 7 184 1.6E-48 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PAJ_RS00900 8e915469147fca774237fedacd690e39 243 PANTHER PTHR30231:SF0 1 242 5.7E-148 T 14-09-2016 PAJ_RS00900 8e915469147fca774237fedacd690e39 243 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 225 1.3E-90 T 14-09-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00900 8e915469147fca774237fedacd690e39 243 SUPERFAMILY SSF53098 4 185 5.79E-52 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS18085 8e79eefb382ed6bad11df5a507ab49f5 238 Pfam PF11254 Protein of unknown function (DUF3053) 19 233 7.1E-85 T 14-09-2016 IPR021413 Protein of unknown function DUF3053 PAJ_RS06320 086e08d506393e756a800c58a66a9e53 368 SUPERFAMILY SSF50182 188 252 5.56E-13 T 14-09-2016 IPR010920 LSM domain PAJ_RS06320 086e08d506393e756a800c58a66a9e53 368 Gene3D G3DSA:2.30.30.60 202 251 9.4E-6 T 14-09-2016 PAJ_RS06320 086e08d506393e756a800c58a66a9e53 368 PANTHER PTHR30566 64 354 5.3E-70 T 14-09-2016 PAJ_RS06320 086e08d506393e756a800c58a66a9e53 368 PANTHER PTHR30566:SF10 64 354 5.3E-70 T 14-09-2016 PAJ_RS06320 086e08d506393e756a800c58a66a9e53 368 SUPERFAMILY SSF82861 123 185 6.02E-5 T 14-09-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 PAJ_RS06320 086e08d506393e756a800c58a66a9e53 368 Pfam PF00924 Mechanosensitive ion channel 144 338 3.5E-28 T 14-09-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PAJ_RS16590 0e3391b506b2155dc7a3193482cef4ce 271 Pfam PF02517 CAAX protease self-immunity 172 258 7.7E-18 T 14-09-2016 IPR003675 CAAX amino terminal protease GO:0016020 PAJ_RS16590 0e3391b506b2155dc7a3193482cef4ce 271 PANTHER PTHR10794:SF54 65 267 2.9E-74 T 14-09-2016 PAJ_RS16590 0e3391b506b2155dc7a3193482cef4ce 271 PANTHER PTHR10794 65 267 2.9E-74 T 14-09-2016 PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 Gene3D G3DSA:3.40.190.10 175 262 3.2E-18 T 14-09-2016 PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 SUPERFAMILY SSF53850 92 294 7.24E-35 T 14-09-2016 PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 SUPERFAMILY SSF46785 1 82 3.05E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 PANTHER PTHR30346:SF8 1 311 9.3E-103 T 14-09-2016 PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 Gene3D G3DSA:3.40.190.10 92 174 1.0E-15 T 14-09-2016 PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.4E-16 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 PANTHER PTHR30346 1 311 9.3E-103 T 14-09-2016 PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 Gene3D G3DSA:1.10.10.10 1 81 7.4E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 Pfam PF03466 LysR substrate binding domain 92 292 6.2E-36 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.2E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.2E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00220 e11ee4ded79cdcc86ad71e23bfef2aa3 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.2E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07325 df11a741540cf8b722007e16e1579b26 188 Pfam PF01713 Smr domain 91 170 6.7E-17 T 14-09-2016 IPR002625 Smr domain PAJ_RS07325 df11a741540cf8b722007e16e1579b26 188 PANTHER PTHR35562:SF2 1 180 3.4E-63 T 14-09-2016 PAJ_RS07325 df11a741540cf8b722007e16e1579b26 188 SMART SM00463 86 170 7.4E-10 T 14-09-2016 IPR002625 Smr domain PAJ_RS07325 df11a741540cf8b722007e16e1579b26 188 PANTHER PTHR35562 1 180 3.4E-63 T 14-09-2016 PAJ_RS07325 df11a741540cf8b722007e16e1579b26 188 SUPERFAMILY SSF160443 88 169 6.41E-10 T 14-09-2016 IPR002625 Smr domain PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 1 22 3.3E-6 T 14-09-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 Gene3D G3DSA:2.60.40.420 171 308 3.5E-28 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 Gene3D G3DSA:2.60.40.420 392 532 4.8E-30 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 SUPERFAMILY SSF49503 33 166 1.06E-31 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 PANTHER PTHR11709 62 343 7.4E-108 T 14-09-2016 PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 PANTHER PTHR11709 372 533 7.4E-108 T 14-09-2016 PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 Pfam PF07731 Multicopper oxidase 408 532 3.9E-24 T 14-09-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 22 5.9E-4 T 14-09-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 ProSitePatterns PS00080 Multicopper oxidases signature 2. 515 526 - T 14-09-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 PANTHER PTHR11709:SF2 62 343 7.4E-108 T 14-09-2016 PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 PANTHER PTHR11709:SF2 372 533 7.4E-108 T 14-09-2016 PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 Gene3D G3DSA:2.60.40.420 32 170 7.1E-34 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 Pfam PF07732 Multicopper oxidase 57 165 1.3E-30 T 14-09-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 SUPERFAMILY SSF49503 172 294 6.0E-28 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 SUPERFAMILY SSF49503 410 532 2.28E-28 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS00520 541ea9938cc57ff7b8d5b89dea05c88b 533 Pfam PF00394 Multicopper oxidase 232 298 8.2E-5 T 14-09-2016 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 Gene3D G3DSA:3.30.420.40 245 480 1.8E-49 T 14-09-2016 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 252 438 3.7E-32 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 243 1.1E-80 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 PIRSF PIRSF000538 1 486 3.1E-140 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 Gene3D G3DSA:3.30.420.40 1 243 1.5E-72 T 14-09-2016 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 SUPERFAMILY SSF53067 245 481 2.27E-57 T 14-09-2016 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 TIGRFAM TIGR01312 XylB: xylulokinase 3 477 7.5E-178 T 14-09-2016 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 128 140 - T 14-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 SUPERFAMILY SSF53067 2 246 8.98E-79 T 14-09-2016 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 PANTHER PTHR10196:SF72 1 479 4.0E-187 T 14-09-2016 PAJ_RS10735 845b0b270b7fe19a195ac38f51252726 487 PANTHER PTHR10196 1 479 4.0E-187 T 14-09-2016 PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 SUPERFAMILY SSF53850 88 297 9.19E-26 T 14-09-2016 PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.8E-14 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 SUPERFAMILY SSF46785 1 87 9.66E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 PANTHER PTHR30419 1 297 1.1E-49 T 14-09-2016 PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 PANTHER PTHR30419:SF4 1 297 1.1E-49 T 14-09-2016 PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 Gene3D G3DSA:3.40.190.10 186 265 3.7E-13 T 14-09-2016 PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 Gene3D G3DSA:1.10.10.10 2 85 1.9E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 Gene3D G3DSA:3.40.190.10 88 185 2.1E-11 T 14-09-2016 PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 Pfam PF03466 LysR substrate binding domain 88 295 1.0E-25 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.5E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.5E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07540 4667db8206be001df5e5a92a799f3654 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.5E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 PRINTS PR00131 Glycosyl hydrolase family 1 signature 437 449 8.3E-16 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 PRINTS PR00131 Glycosyl hydrolase family 1 signature 390 401 8.3E-16 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 PRINTS PR00131 Glycosyl hydrolase family 1 signature 303 317 8.3E-16 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 PRINTS PR00131 Glycosyl hydrolase family 1 signature 369 377 8.3E-16 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 PRINTS PR00131 Glycosyl hydrolase family 1 signature 412 429 8.3E-16 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 369 377 - T 14-09-2016 IPR018120 Glycoside hydrolase family 1, active site PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 PANTHER PTHR10353:SF35 4 475 9.9E-236 T 14-09-2016 PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 SUPERFAMILY SSF51445 2 473 1.38E-161 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 7 21 - T 14-09-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 PANTHER PTHR10353 4 475 9.9E-236 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 Gene3D G3DSA:3.20.20.80 2 473 4.7E-151 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS13300 97172bc517d3a7018787dbcf22b3c849 475 Pfam PF00232 Glycosyl hydrolase family 1 2 472 1.2E-128 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS01605 625c2c560a01a651ac83279a2eb83751 165 Pfam PF04608 Phosphatidylglycerophosphatase A 19 158 2.7E-54 T 14-09-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 PAJ_RS01605 625c2c560a01a651ac83279a2eb83751 165 SUPERFAMILY SSF101307 12 158 6.67E-49 T 14-09-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 PAJ_RS01605 625c2c560a01a651ac83279a2eb83751 165 Gene3D G3DSA:1.10.3760.10 76 155 8.6E-6 T 14-09-2016 IPR027416 YutG-like domain PAJ_RS01605 625c2c560a01a651ac83279a2eb83751 165 PANTHER PTHR36305 4 165 6.1E-75 T 14-09-2016 PAJ_RS01605 625c2c560a01a651ac83279a2eb83751 165 PIRSF PIRSF006162 8 165 2.2E-58 T 14-09-2016 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 PANTHER PTHR11751:SF389 10 110 1.7E-25 T 14-09-2016 PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 SMART SM00345 15 74 5.1E-18 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 SMART SM00895 94 220 2.1E-19 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 Gene3D G3DSA:1.20.120.530 92 226 5.5E-26 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 Gene3D G3DSA:1.10.10.10 8 77 1.1E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 PANTHER PTHR11751 10 110 1.7E-25 T 14-09-2016 PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 2.6E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 2.6E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 Pfam PF07729 FCD domain 94 219 1.2E-23 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 SUPERFAMILY SSF48008 92 226 1.7E-24 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 SUPERFAMILY SSF46785 7 77 6.98E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS16460 732afbba5c004959d70763e5acff5e07 227 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 2.4E-19 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 2.2E-16 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.2E-16 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 2.2E-16 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.2E-16 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.2E-16 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 PANTHER PTHR24320:SF80 7 187 3.0E-38 T 14-09-2016 PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 PANTHER PTHR24320 7 187 3.0E-38 T 14-09-2016 PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 SUPERFAMILY SSF51735 2 215 4.73E-48 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 Pfam PF00106 short chain dehydrogenase 7 193 3.3E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 2.2E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.2E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.2E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 182 4.4E-4 T 14-09-2016 PAJ_RS08240 9dfa50b084404da8424275830f13e568 248 Gene3D G3DSA:3.40.50.720 4 198 1.2E-47 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS02355 20dafcb5142cfb0ce2de1a4897401d77 364 SUPERFAMILY SSF53807 26 355 1.96E-47 T 14-09-2016 PAJ_RS02355 20dafcb5142cfb0ce2de1a4897401d77 364 PANTHER PTHR30535:SF5 17 351 1.7E-54 T 14-09-2016 PAJ_RS02355 20dafcb5142cfb0ce2de1a4897401d77 364 Pfam PF01497 Periplasmic binding protein 96 310 1.1E-20 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 PAJ_RS02355 20dafcb5142cfb0ce2de1a4897401d77 364 Gene3D G3DSA:3.40.50.1980 39 174 1.4E-14 T 14-09-2016 PAJ_RS02355 20dafcb5142cfb0ce2de1a4897401d77 364 PANTHER PTHR30535 17 351 1.7E-54 T 14-09-2016 PAJ_RS02355 20dafcb5142cfb0ce2de1a4897401d77 364 Gene3D G3DSA:3.40.50.1980 175 344 2.3E-21 T 14-09-2016 PAJ_RS08710 3d50dee7ba1690d174fae3172c969444 322 Pfam PF13391 HNH endonuclease 216 274 6.7E-5 T 14-09-2016 IPR003615 HNH nuclease PAJ_RS07025 46d195a63f2f8ca4cbed564ab82a7cb4 456 Pfam PF07690 Major Facilitator Superfamily 30 364 2.8E-32 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS07025 46d195a63f2f8ca4cbed564ab82a7cb4 456 PANTHER PTHR23508:SF8 1 437 5.5E-183 T 14-09-2016 PAJ_RS07025 46d195a63f2f8ca4cbed564ab82a7cb4 456 PANTHER PTHR23508 1 437 5.5E-183 T 14-09-2016 PAJ_RS07025 46d195a63f2f8ca4cbed564ab82a7cb4 456 Gene3D G3DSA:1.20.1250.20 25 219 1.9E-25 T 14-09-2016 PAJ_RS07025 46d195a63f2f8ca4cbed564ab82a7cb4 456 Gene3D G3DSA:1.20.1250.20 258 439 1.8E-20 T 14-09-2016 PAJ_RS07025 46d195a63f2f8ca4cbed564ab82a7cb4 456 ProSitePatterns PS00216 Sugar transport proteins signature 1. 79 95 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS07025 46d195a63f2f8ca4cbed564ab82a7cb4 456 SUPERFAMILY SSF103473 14 439 2.49E-63 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS01350 a5d38a5d3f430b1fef510de4ec89b8d3 551 Pfam PF02652 L-lactate permease 16 542 2.0E-219 T 14-09-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 PAJ_RS01350 a5d38a5d3f430b1fef510de4ec89b8d3 551 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 6 544 2.6E-230 T 14-09-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 PAJ_RS01350 a5d38a5d3f430b1fef510de4ec89b8d3 551 PANTHER PTHR30003:SF0 2 551 0.0 T 14-09-2016 PAJ_RS01350 a5d38a5d3f430b1fef510de4ec89b8d3 551 PANTHER PTHR30003 2 551 0.0 T 14-09-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 Pfam PF13307 Helicase C-terminal domain 533 688 5.0E-24 T 14-09-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 SMART SM00491 545 677 2.6E-32 T 14-09-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 PANTHER PTHR11472:SF32 1 700 1.3E-300 T 14-09-2016 PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 Pfam PF06733 DEAD_2 202 264 1.3E-6 T 14-09-2016 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 Pfam PF00270 DEAD/DEAH box helicase 29 95 2.6E-5 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 PANTHER PTHR11472 1 700 1.3E-300 T 14-09-2016 PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 SUPERFAMILY SSF52540 12 120 3.8E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 SUPERFAMILY SSF52540 211 265 3.8E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 SUPERFAMILY SSF52540 636 672 3.8E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 SUPERFAMILY SSF52540 244 307 7.34E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 SUPERFAMILY SSF52540 647 661 7.34E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 SUPERFAMILY SSF52540 519 616 7.34E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 SMART SM00487 23 307 2.9E-4 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 Gene3D G3DSA:3.40.50.300 516 671 6.1E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 Gene3D G3DSA:3.40.50.300 211 293 9.3E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 Gene3D G3DSA:3.40.50.300 454 464 9.3E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 Gene3D G3DSA:3.40.50.300 16 122 9.3E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03160 4ae1cefc4132098a5cf5a105f8c394df 720 SMART SM00488 18 291 0.0018 T 14-09-2016 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 PAJ_RS09505 a4d4da6602048477427a89275b1a91bb 535 Gene3D G3DSA:3.40.190.10 213 313 1.3E-20 T 14-09-2016 PAJ_RS09505 a4d4da6602048477427a89275b1a91bb 535 PIRSF PIRSF002741 24 526 8.0E-64 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS09505 a4d4da6602048477427a89275b1a91bb 535 SUPERFAMILY SSF53850 55 525 1.61E-110 T 14-09-2016 PAJ_RS09505 a4d4da6602048477427a89275b1a91bb 535 Gene3D G3DSA:3.90.76.10 74 212 6.9E-35 T 14-09-2016 PAJ_RS09505 a4d4da6602048477427a89275b1a91bb 535 PANTHER PTHR30290 21 527 2.7E-96 T 14-09-2016 PAJ_RS09505 a4d4da6602048477427a89275b1a91bb 535 Gene3D G3DSA:3.10.105.10 314 495 6.7E-29 T 14-09-2016 PAJ_RS09505 a4d4da6602048477427a89275b1a91bb 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 106 447 2.4E-70 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS19110 ee0a167f327593add317e214b7b6afe2 477 PANTHER PTHR30175:SF3 1 477 2.5E-192 T 14-09-2016 PAJ_RS19110 ee0a167f327593add317e214b7b6afe2 477 Pfam PF02378 Phosphotransferase system, EIIC 121 404 4.7E-33 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS19110 ee0a167f327593add317e214b7b6afe2 477 PANTHER PTHR30175 1 477 2.5E-192 T 14-09-2016 PAJ_RS19110 ee0a167f327593add317e214b7b6afe2 477 Gene3D G3DSA:3.30.1360.60 6 82 7.5E-19 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS19110 ee0a167f327593add317e214b7b6afe2 477 SUPERFAMILY SSF55604 9 79 4.84E-14 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS19110 ee0a167f327593add317e214b7b6afe2 477 Pfam PF00367 phosphotransferase system, EIIB 11 37 2.6E-10 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS03710 eac2aa59d1dfe6ad43a5a9d219d9389f 209 Pfam PF00753 Metallo-beta-lactamase superfamily 10 192 2.4E-30 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS03710 eac2aa59d1dfe6ad43a5a9d219d9389f 209 PANTHER PTHR11935 1 209 8.5E-120 T 14-09-2016 PAJ_RS03710 eac2aa59d1dfe6ad43a5a9d219d9389f 209 SUPERFAMILY SSF56281 3 209 1.31E-56 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS03710 eac2aa59d1dfe6ad43a5a9d219d9389f 209 PANTHER PTHR11935:SF115 1 209 8.5E-120 T 14-09-2016 PAJ_RS03710 eac2aa59d1dfe6ad43a5a9d219d9389f 209 Gene3D G3DSA:3.60.15.10 2 209 5.9E-60 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS03710 eac2aa59d1dfe6ad43a5a9d219d9389f 209 SMART SM00849 12 192 5.8E-38 T 14-09-2016 IPR001279 Metallo-beta-lactamase PAJ_RS13870 55f64206382cce05ee919165fe39fafd 816 Gene3D G3DSA:3.30.565.10 7 183 3.7E-11 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS13870 55f64206382cce05ee919165fe39fafd 816 SUPERFAMILY SSF55874 3 98 1.0E-12 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS13870 55f64206382cce05ee919165fe39fafd 816 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 23 104 4.0E-8 T 14-09-2016 PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 SUPERFAMILY SSF51735 6 253 1.02E-61 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 252 2.9E-85 T 14-09-2016 PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.8E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 3.8E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 3.8E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 PANTHER PTHR24322 159 191 3.8E-66 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 PANTHER PTHR24322 11 143 3.8E-66 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 PANTHER PTHR24322:SF317 159 191 3.8E-66 T 14-09-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 PANTHER PTHR24322:SF317 11 143 3.8E-66 T 14-09-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 Gene3D G3DSA:3.40.50.720 2 253 1.7E-62 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07530 40ab2cb070e31c3e77b811fb47bb01bf 262 PIRSF PIRSF000094 1 260 2.1E-125 T 14-09-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PAJ_RS17605 34987dc00d9e86bfb387c869d45474be 146 PANTHER PTHR19384 1 146 6.9E-53 T 14-09-2016 PAJ_RS17605 34987dc00d9e86bfb387c869d45474be 146 Pfam PF00258 Flavodoxin 7 138 2.6E-25 T 14-09-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 PAJ_RS17605 34987dc00d9e86bfb387c869d45474be 146 SUPERFAMILY SSF52218 1 146 1.26E-38 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS17605 34987dc00d9e86bfb387c869d45474be 146 Gene3D G3DSA:3.40.50.360 1 145 4.8E-36 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS17605 34987dc00d9e86bfb387c869d45474be 146 PANTHER PTHR19384:SF81 1 146 6.9E-53 T 14-09-2016 PAJ_RS17605 34987dc00d9e86bfb387c869d45474be 146 PRINTS PR00369 Flavodoxin signature 106 125 1.1E-6 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS17605 34987dc00d9e86bfb387c869d45474be 146 PRINTS PR00369 Flavodoxin signature 5 18 1.1E-6 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS17605 34987dc00d9e86bfb387c869d45474be 146 PRINTS PR00369 Flavodoxin signature 51 62 1.1E-6 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS17605 34987dc00d9e86bfb387c869d45474be 146 PRINTS PR00369 Flavodoxin signature 82 92 1.1E-6 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS04160 82b59d9d98c5d1d98bfa4dd2ba8987ac 111 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 40 97 2.4E-5 T 14-09-2016 IPR008767 Bacteriophage SPP1, head-tail adaptor PAJ_RS04160 82b59d9d98c5d1d98bfa4dd2ba8987ac 111 Pfam PF05521 Phage head-tail joining protein 11 101 2.6E-10 T 14-09-2016 IPR008767 Bacteriophage SPP1, head-tail adaptor PAJ_RS09775 2b03bb0ba7da3550bf18a52be00156e1 425 PANTHER PTHR13847 3 422 1.6E-210 T 14-09-2016 PAJ_RS09775 2b03bb0ba7da3550bf18a52be00156e1 425 PANTHER PTHR13847:SF210 3 422 1.6E-210 T 14-09-2016 PAJ_RS09775 2b03bb0ba7da3550bf18a52be00156e1 425 SUPERFAMILY SSF51905 343 416 1.29E-39 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09775 2b03bb0ba7da3550bf18a52be00156e1 425 SUPERFAMILY SSF51905 26 251 1.29E-39 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09775 2b03bb0ba7da3550bf18a52be00156e1 425 Gene3D G3DSA:3.50.50.60 14 117 9.2E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09775 2b03bb0ba7da3550bf18a52be00156e1 425 Gene3D G3DSA:3.50.50.60 170 250 9.2E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09775 2b03bb0ba7da3550bf18a52be00156e1 425 Gene3D G3DSA:3.50.50.60 343 392 9.2E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS09775 2b03bb0ba7da3550bf18a52be00156e1 425 Pfam PF01266 FAD dependent oxidoreductase 28 379 6.8E-47 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PAJ_RS08015 ba5430ff5285915eb8fb481e4ca1973b 219 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 18 213 7.1E-55 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PAJ_RS08015 ba5430ff5285915eb8fb481e4ca1973b 219 PANTHER PTHR11820 16 213 5.8E-87 T 14-09-2016 PAJ_RS08015 ba5430ff5285915eb8fb481e4ca1973b 219 Gene3D G3DSA:3.90.850.10 14 213 3.0E-79 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PAJ_RS08015 ba5430ff5285915eb8fb481e4ca1973b 219 SUPERFAMILY SSF56529 11 214 3.14E-71 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 43.88 T 14-09-2016 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 PIRSF PIRSF006487 1 363 4.6E-78 T 14-09-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 Gene3D G3DSA:3.30.1360.120 144 231 3.3E-52 T 14-09-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 Gene3D G3DSA:3.30.1360.120 3 53 3.3E-52 T 14-09-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 PANTHER PTHR13847 5 357 3.0E-61 T 14-09-2016 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 PANTHER PTHR13847:SF5 5 357 3.0E-61 T 14-09-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 8.4E-82 T 14-09-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 263 353 2.1E-18 T 14-09-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 Gene3D G3DSA:2.40.30.110 278 361 7.2E-28 T 14-09-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 358 5.9E-152 T 14-09-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 Gene3D G3DSA:3.30.70.1400 54 137 2.7E-29 T 14-09-2016 PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 SUPERFAMILY SSF101790 272 360 1.31E-24 T 14-09-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain PAJ_RS13320 91bf4a6109871f313296e653992a42c9 365 SUPERFAMILY SSF103025 3 277 3.61E-90 T 14-09-2016 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 SUPERFAMILY SSF52540 1 213 1.04E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 Gene3D G3DSA:3.40.50.300 1 212 1.7E-82 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 PANTHER PTHR23359 1 213 1.1E-113 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 PRINTS PR00094 Adenylate kinase signature 81 97 1.4E-35 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 PRINTS PR00094 Adenylate kinase signature 4 17 1.4E-35 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 PRINTS PR00094 Adenylate kinase signature 32 46 1.4E-35 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 PRINTS PR00094 Adenylate kinase signature 173 187 1.4E-35 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 PRINTS PR00094 Adenylate kinase signature 156 171 1.4E-35 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 Pfam PF00406 Adenylate kinase 5 186 2.6E-60 T 14-09-2016 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.5E-15 T 14-09-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 3.3E-76 T 14-09-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PAJ_RS01895 b632967ee2fab4dbf34995c2180fd390 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 53.44 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PAJ_RS03460 929beee9ac398c9b4daeb70de121110e 155 Pfam PF10767 Protein of unknown function (DUF2593) 14 153 1.6E-62 T 14-09-2016 IPR019703 Protein of unknown function DUF2593 PAJ_RS14445 5a33184f842def14a4c08217aa056007 220 Pfam PF09335 SNARE associated Golgi protein 48 173 1.4E-19 T 14-09-2016 IPR032816 SNARE associated Golgi protein PAJ_RS14445 5a33184f842def14a4c08217aa056007 220 PANTHER PTHR30353:SF10 1 216 1.5E-145 T 14-09-2016 PAJ_RS14445 5a33184f842def14a4c08217aa056007 220 PANTHER PTHR30353 1 216 1.5E-145 T 14-09-2016 IPR032818 DedA family PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 3.2E-60 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 3.2E-60 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 3.2E-60 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 3.2E-60 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 3.2E-60 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 3.2E-60 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PANTHER PTHR20854 1 267 2.2E-108 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 Gene3D G3DSA:3.40.190.80 154 261 1.1E-40 T 14-09-2016 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 14-09-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 14-09-2016 IPR020583 Inositol monophosphatase, metal-binding site PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 5.4E-37 T 14-09-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 5.4E-37 T 14-09-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 5.4E-37 T 14-09-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 5.4E-37 T 14-09-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 Pfam PF00459 Inositol monophosphatase family 2 260 1.2E-73 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 PANTHER PTHR20854:SF4 1 267 2.2E-108 T 14-09-2016 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 Gene3D G3DSA:3.30.540.10 2 153 1.8E-51 T 14-09-2016 PAJ_RS11930 c91280f5e48c83c72373c5e237e655bf 267 SUPERFAMILY SSF56655 1 259 4.71E-87 T 14-09-2016 PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 Gene3D G3DSA:3.40.50.790 69 159 4.7E-41 T 14-09-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 Gene3D G3DSA:3.30.190.20 161 225 1.8E-46 T 14-09-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 Gene3D G3DSA:3.30.190.20 17 68 1.8E-46 T 14-09-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 2.0E-106 T 14-09-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 PIRSF PIRSF002155 1 227 3.3E-77 T 14-09-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 1.1E-51 T 14-09-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 PANTHER PTHR23105 21 229 3.0E-81 T 14-09-2016 PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.018 T 14-09-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 14-09-2016 IPR023673 Ribosomal protein L1, conserved site PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 PANTHER PTHR23105:SF5 21 229 3.0E-81 T 14-09-2016 PAJ_RS18670 dfbc1076fad2e8e185d6f9dcaecf566d 234 SUPERFAMILY SSF56808 6 225 2.09E-82 T 14-09-2016 IPR023674 Ribosomal protein L1-like PAJ_RS00500 d099f2242a2880cbd2624844a35c92dd 278 Pfam PF00561 alpha/beta hydrolase fold 31 113 3.0E-7 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS00500 d099f2242a2880cbd2624844a35c92dd 278 SUPERFAMILY SSF53474 26 258 1.57E-20 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS00500 d099f2242a2880cbd2624844a35c92dd 278 Gene3D G3DSA:3.40.50.1820 11 258 4.9E-15 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 PANTHER PTHR10992:SF26 27 192 1.3E-121 T 14-09-2016 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 PRINTS PR00412 Epoxide hydrolase signature 136 149 2.4E-6 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 PRINTS PR00412 Epoxide hydrolase signature 282 304 2.4E-6 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 PRINTS PR00412 Epoxide hydrolase signature 122 135 2.4E-6 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 PRINTS PR00412 Epoxide hydrolase signature 56 74 2.4E-6 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 PANTHER PTHR10992:SF26 208 307 1.3E-121 T 14-09-2016 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 Pfam PF00561 alpha/beta hydrolase fold 50 163 1.5E-16 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 Gene3D G3DSA:3.40.50.1820 19 307 5.0E-63 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 PANTHER PTHR10992 208 307 1.3E-121 T 14-09-2016 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 PRINTS PR00111 Alpha/beta hydrolase fold signature 75 90 5.5E-5 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 PRINTS PR00111 Alpha/beta hydrolase fold signature 136 149 5.5E-5 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 PANTHER PTHR10992 27 192 1.3E-121 T 14-09-2016 PAJ_RS06380 be0a3b37fdcddae3bfa66fffb65f6ae2 311 SUPERFAMILY SSF53474 25 307 1.04E-66 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 SUPERFAMILY SSF90002 241 332 6.41E-19 T 14-09-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 240 331 6.0E-17 T 14-09-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 SMART SM00833 239 333 8.1E-18 T 14-09-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 Gene3D G3DSA:3.40.50.300 4 203 4.1E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 SUPERFAMILY SSF52540 5 186 2.09E-26 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 PANTHER PTHR13748:SF43 3 214 1.7E-61 T 14-09-2016 PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 Gene3D G3DSA:3.30.1220.10 231 332 2.8E-25 T 14-09-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 8 186 1.5E-38 T 14-09-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 PANTHER PTHR13748:SF43 230 331 1.7E-61 T 14-09-2016 PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 PANTHER PTHR13748 230 331 1.7E-61 T 14-09-2016 PAJ_RS07005 0f3eca0611abf9337c7644cd994ab4e8 339 PANTHER PTHR13748 3 214 1.7E-61 T 14-09-2016 PAJ_RS12940 b336591c13151e5a446bade49e5ecc68 275 Gene3D G3DSA:3.30.2140.10 14 100 8.2E-14 T 14-09-2016 PAJ_RS12940 b336591c13151e5a446bade49e5ecc68 275 Gene3D G3DSA:3.30.2140.10 191 261 8.2E-14 T 14-09-2016 PAJ_RS12940 b336591c13151e5a446bade49e5ecc68 275 SUPERFAMILY SSF54001 10 263 1.74E-24 T 14-09-2016 PAJ_RS12940 b336591c13151e5a446bade49e5ecc68 275 Pfam PF00797 N-acetyltransferase 33 140 9.3E-5 T 14-09-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 Pfam PF00245 Alkaline phosphatase 42 375 1.7E-37 T 14-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 SMART SM00098 43 524 6.8E-11 T 14-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 SUPERFAMILY SSF53649 133 521 3.84E-75 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 SUPERFAMILY SSF53649 36 92 3.84E-75 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 PANTHER PTHR11596 333 374 1.6E-51 T 14-09-2016 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 PANTHER PTHR11596 395 435 1.6E-51 T 14-09-2016 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 PANTHER PTHR11596 133 306 1.6E-51 T 14-09-2016 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 Gene3D G3DSA:3.40.720.10 133 523 7.8E-106 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 Gene3D G3DSA:3.40.720.10 23 92 7.8E-106 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 PANTHER PTHR11596:SF5 395 435 1.6E-51 T 14-09-2016 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 PANTHER PTHR11596:SF5 333 374 1.6E-51 T 14-09-2016 PAJ_RS06820 a828ec6fe29e7f5de235016776f66ceb 537 PANTHER PTHR11596:SF5 133 306 1.6E-51 T 14-09-2016 PAJ_RS09410 e617b0e406e043bd85cba4104ea973ff 239 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 10 227 8.0E-106 T 14-09-2016 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 PAJ_RS09410 e617b0e406e043bd85cba4104ea973ff 239 PANTHER PTHR24220 11 230 5.3E-121 T 14-09-2016 PAJ_RS09410 e617b0e406e043bd85cba4104ea973ff 239 PANTHER PTHR24220:SF380 11 230 5.3E-121 T 14-09-2016 PAJ_RS09410 e617b0e406e043bd85cba4104ea973ff 239 Pfam PF00005 ABC transporter 32 186 1.4E-27 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09410 e617b0e406e043bd85cba4104ea973ff 239 SMART SM00382 41 233 3.0E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09410 e617b0e406e043bd85cba4104ea973ff 239 Gene3D G3DSA:3.40.50.300 4 231 3.2E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09410 e617b0e406e043bd85cba4104ea973ff 239 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS09410 e617b0e406e043bd85cba4104ea973ff 239 SUPERFAMILY SSF52540 10 231 9.71E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13650 0e939eace3605a0987e5695eb07deba4 169 Gene3D G3DSA:1.20.1260.10 1 160 2.0E-50 T 14-09-2016 IPR012347 Ferritin-related PAJ_RS13650 0e939eace3605a0987e5695eb07deba4 169 Pfam PF05974 Domain of unknown function (DUF892) 5 157 9.0E-48 T 14-09-2016 IPR010287 Domain of unknown function DUF892 PAJ_RS13650 0e939eace3605a0987e5695eb07deba4 169 SUPERFAMILY SSF47240 2 156 3.88E-45 T 14-09-2016 IPR009078 Ferritin-like superfamily PAJ_RS13650 0e939eace3605a0987e5695eb07deba4 169 PANTHER PTHR30565:SF1 1 169 6.5E-87 T 14-09-2016 PAJ_RS13650 0e939eace3605a0987e5695eb07deba4 169 PANTHER PTHR30565 1 169 6.5E-87 T 14-09-2016 PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 Gene3D G3DSA:3.10.580.10 55 197 7.0E-24 T 14-09-2016 PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 PANTHER PTHR22777:SF17 18 293 6.9E-128 T 14-09-2016 PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 Pfam PF03471 Transporter associated domain 206 281 4.4E-22 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 SMART SM01091 205 283 4.4E-30 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 PANTHER PTHR22777 18 293 6.9E-128 T 14-09-2016 PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 Gene3D G3DSA:3.30.465.10 198 283 3.5E-32 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 SUPERFAMILY SSF56176 203 291 3.54E-24 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 Pfam PF00571 CBS domain 140 189 3.3E-5 T 14-09-2016 IPR000644 CBS domain PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 Pfam PF00571 CBS domain 69 125 1.2E-7 T 14-09-2016 IPR000644 CBS domain PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 SMART SM00116 78 127 3.0 T 14-09-2016 IPR000644 CBS domain PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 SMART SM00116 141 189 1.1 T 14-09-2016 IPR000644 CBS domain PAJ_RS02510 784604aac3de51af9ce6e029ef35d4e8 293 SUPERFAMILY SSF54631 66 202 1.06E-32 T 14-09-2016 PAJ_RS06330 2c06d92c71029acb49438ebc01e5b6a4 235 SUPERFAMILY SSF53474 28 204 5.2E-21 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS06330 2c06d92c71029acb49438ebc01e5b6a4 235 Gene3D G3DSA:3.40.50.1820 8 207 7.9E-17 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS00165 50410afe4d3536cee851b9d4c05a9cd6 271 SMART SM00271 204 269 2.9E-14 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00165 50410afe4d3536cee851b9d4c05a9cd6 271 Gene3D G3DSA:1.10.287.110 210 267 1.4E-12 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00165 50410afe4d3536cee851b9d4c05a9cd6 271 Gene3D G3DSA:1.10.3680.10 22 209 4.3E-26 T 14-09-2016 IPR029024 TerB-like PAJ_RS00165 50410afe4d3536cee851b9d4c05a9cd6 271 PRINTS PR00625 DnaJ domain signature 249 269 3.5E-6 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00165 50410afe4d3536cee851b9d4c05a9cd6 271 PRINTS PR00625 DnaJ domain signature 225 240 3.5E-6 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00165 50410afe4d3536cee851b9d4c05a9cd6 271 PRINTS PR00625 DnaJ domain signature 207 225 3.5E-6 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00165 50410afe4d3536cee851b9d4c05a9cd6 271 Hamap MF_01153 DnaJ-like protein DjlA [djlA]. 1 271 40.823 T 14-09-2016 IPR023749 Co-chaperone DjlA GO:0051087 PAJ_RS00165 50410afe4d3536cee851b9d4c05a9cd6 271 Pfam PF00226 DnaJ domain 208 267 1.5E-9 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS00165 50410afe4d3536cee851b9d4c05a9cd6 271 Pfam PF05099 Tellurite resistance protein TerB 46 171 3.8E-10 T 14-09-2016 IPR007791 Co-chaperone DjlA, N-terminal PAJ_RS00165 50410afe4d3536cee851b9d4c05a9cd6 271 SUPERFAMILY SSF46565 132 267 5.13E-28 T 14-09-2016 IPR001623 DnaJ domain PAJ_RS11585 8da62b78f8164fa3b7a6ef95ee9c6a81 466 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 76 101 - T 14-09-2016 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 PAJ_RS11585 8da62b78f8164fa3b7a6ef95ee9c6a81 466 Pfam PF13347 MFS/sugar transport protein 27 448 1.9E-83 T 14-09-2016 PAJ_RS11585 8da62b78f8164fa3b7a6ef95ee9c6a81 466 SUPERFAMILY SSF103473 30 408 8.37E-26 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS11585 8da62b78f8164fa3b7a6ef95ee9c6a81 466 Gene3D G3DSA:1.20.1250.20 41 221 1.7E-13 T 14-09-2016 PAJ_RS11585 8da62b78f8164fa3b7a6ef95ee9c6a81 466 Gene3D G3DSA:1.20.1250.20 241 409 1.8E-5 T 14-09-2016 PAJ_RS11585 8da62b78f8164fa3b7a6ef95ee9c6a81 466 PANTHER PTHR11328:SF24 20 463 4.5E-105 T 14-09-2016 PAJ_RS11585 8da62b78f8164fa3b7a6ef95ee9c6a81 466 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 25 460 2.3E-101 T 14-09-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 PAJ_RS11585 8da62b78f8164fa3b7a6ef95ee9c6a81 466 PANTHER PTHR11328 20 463 4.5E-105 T 14-09-2016 PAJ_RS09780 a04937deae29b95cfba980d1e54e62ad 275 SUPERFAMILY SSF51735 1 267 1.9E-31 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09780 a04937deae29b95cfba980d1e54e62ad 275 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 213 3.4E-9 T 14-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PAJ_RS09780 a04937deae29b95cfba980d1e54e62ad 275 PANTHER PTHR10366 3 267 8.4E-60 T 14-09-2016 PAJ_RS09780 a04937deae29b95cfba980d1e54e62ad 275 Gene3D G3DSA:3.40.50.720 1 217 4.3E-25 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09780 a04937deae29b95cfba980d1e54e62ad 275 PANTHER PTHR10366:SF289 3 267 8.4E-60 T 14-09-2016 PAJ_RS15790 bdd8038670bfc0da524190ee69074035 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.242 T 14-09-2016 IPR023036 Ribosomal protein S14, bacterial/plastid PAJ_RS15790 bdd8038670bfc0da524190ee69074035 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 14-09-2016 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 PAJ_RS15790 bdd8038670bfc0da524190ee69074035 101 Gene3D G3DSA:4.10.830.10 41 101 2.0E-31 T 14-09-2016 PAJ_RS15790 bdd8038670bfc0da524190ee69074035 101 SUPERFAMILY SSF57716 2 101 7.84E-38 T 14-09-2016 PAJ_RS15790 bdd8038670bfc0da524190ee69074035 101 PANTHER PTHR19836 1 101 5.1E-62 T 14-09-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15790 bdd8038670bfc0da524190ee69074035 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 6.1E-27 T 14-09-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS18725 d1b617160604dbff6e6a252820816f6f 222 PANTHER PTHR28511:SF1 3 218 5.6E-89 T 14-09-2016 PAJ_RS18725 d1b617160604dbff6e6a252820816f6f 222 Hamap MF_00801 Endonuclease V [nfi]. 2 216 34.858 T 14-09-2016 IPR007581 Endonuclease V GO:0004519|GO:0006281 PAJ_RS18725 d1b617160604dbff6e6a252820816f6f 222 Pfam PF04493 Endonuclease V 14 206 1.2E-74 T 14-09-2016 IPR007581 Endonuclease V GO:0004519|GO:0006281 PAJ_RS18725 d1b617160604dbff6e6a252820816f6f 222 PANTHER PTHR28511 3 218 5.6E-89 T 14-09-2016 PAJ_RS19960 c1eba82d9a3a6b09d88c195adeade99b 168 SUPERFAMILY SSF55729 1 153 3.31E-23 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS19960 c1eba82d9a3a6b09d88c195adeade99b 168 Gene3D G3DSA:3.40.630.30 14 127 1.6E-16 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS19960 c1eba82d9a3a6b09d88c195adeade99b 168 PANTHER PTHR23091:SF237 1 165 1.4E-18 T 14-09-2016 PAJ_RS19960 c1eba82d9a3a6b09d88c195adeade99b 168 PANTHER PTHR23091 1 165 1.4E-18 T 14-09-2016 PAJ_RS19960 c1eba82d9a3a6b09d88c195adeade99b 168 Pfam PF00583 Acetyltransferase (GNAT) family 49 123 8.4E-9 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS18120 c098a05eff2d703d30761c25854dbc0e 142 SUPERFAMILY SSF82784 1 140 1.13E-44 T 14-09-2016 IPR003718 OsmC/Ohr family PAJ_RS18120 c098a05eff2d703d30761c25854dbc0e 142 Gene3D G3DSA:3.30.300.20 48 140 6.9E-36 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta PAJ_RS18120 c098a05eff2d703d30761c25854dbc0e 142 Pfam PF02566 OsmC-like protein 44 138 1.2E-16 T 14-09-2016 IPR003718 OsmC/Ohr family PAJ_RS18120 c098a05eff2d703d30761c25854dbc0e 142 PANTHER PTHR33797:SF2 1 140 5.3E-69 T 14-09-2016 PAJ_RS18120 c098a05eff2d703d30761c25854dbc0e 142 PANTHER PTHR33797 1 140 5.3E-69 T 14-09-2016 PAJ_RS18120 c098a05eff2d703d30761c25854dbc0e 142 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 139 6.4E-54 T 14-09-2016 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 PAJ_RS18120 c098a05eff2d703d30761c25854dbc0e 142 Gene3D G3DSA:2.20.25.10 1 45 3.0E-23 T 14-09-2016 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 SUPERFAMILY SSF63380 216 432 2.72E-57 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 Pfam PF00175 Oxidoreductase NAD-binding domain 443 549 2.7E-20 T 14-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 SUPERFAMILY SSF52343 431 585 6.42E-52 T 14-09-2016 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 Gene3D G3DSA:3.40.50.360 44 195 1.5E-45 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 467 476 1.4E-31 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 372 379 1.4E-31 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 480 491 1.4E-31 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 255 265 1.4E-31 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 405 414 1.4E-31 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 442 461 1.4E-31 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 511 527 1.4E-31 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 534 542 1.4E-31 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00369 Flavodoxin signature 133 143 7.4E-14 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00369 Flavodoxin signature 157 176 7.4E-14 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00369 Flavodoxin signature 101 112 7.4E-14 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PRINTS PR00369 Flavodoxin signature 53 66 7.4E-14 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 Gene3D G3DSA:3.40.50.80 442 585 1.3E-58 T 14-09-2016 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 Gene3D G3DSA:1.20.990.10 266 369 4.8E-15 T 14-09-2016 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 Gene3D G3DSA:2.40.30.10 217 265 1.1E-40 T 14-09-2016 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 Gene3D G3DSA:2.40.30.10 370 441 1.1E-40 T 14-09-2016 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 Pfam PF00258 Flavodoxin 54 180 4.4E-31 T 14-09-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PANTHER PTHR19384 54 585 1.1E-191 T 14-09-2016 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 Pfam PF00667 FAD binding domain 217 410 4.6E-33 T 14-09-2016 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 SUPERFAMILY SSF52218 50 193 2.1E-44 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS19705 f7f51b4e244af8bbc84ca7a7585e73ec 585 PIRSF PIRSF000207 8 585 6.3E-228 T 14-09-2016 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PAJ_RS10975 d132fa25230e8d5ecd531c0a7468e18f 246 PANTHER PTHR30071 1 222 2.2E-85 T 14-09-2016 PAJ_RS10975 d132fa25230e8d5ecd531c0a7468e18f 246 Pfam PF01578 Cytochrome C assembly protein 7 184 6.5E-33 T 14-09-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 PAJ_RS10975 d132fa25230e8d5ecd531c0a7468e18f 246 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 226 2.8E-83 T 14-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10975 d132fa25230e8d5ecd531c0a7468e18f 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 202 226 1.5E-61 T 14-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10975 d132fa25230e8d5ecd531c0a7468e18f 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 1.5E-61 T 14-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10975 d132fa25230e8d5ecd531c0a7468e18f 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 1.5E-61 T 14-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10975 d132fa25230e8d5ecd531c0a7468e18f 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 1.5E-61 T 14-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10975 d132fa25230e8d5ecd531c0a7468e18f 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 1.5E-61 T 14-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS10975 d132fa25230e8d5ecd531c0a7468e18f 246 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 1.5E-61 T 14-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PAJ_RS00645 2fdd74b5abddfe36e8dcd6ba92b4f814 232 Pfam PF01048 Phosphorylase superfamily 3 226 1.9E-45 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS00645 2fdd74b5abddfe36e8dcd6ba92b4f814 232 Gene3D G3DSA:3.40.50.1580 1 229 8.4E-75 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS00645 2fdd74b5abddfe36e8dcd6ba92b4f814 232 PANTHER PTHR21234 1 229 2.0E-59 T 14-09-2016 IPR018017 Nucleoside phosphorylase PAJ_RS00645 2fdd74b5abddfe36e8dcd6ba92b4f814 232 SUPERFAMILY SSF53167 1 229 2.75E-72 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PAJ_RS00645 2fdd74b5abddfe36e8dcd6ba92b4f814 232 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 3 229 4.7E-118 T 14-09-2016 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154|UniPathway: UPA00904 PAJ_RS00645 2fdd74b5abddfe36e8dcd6ba92b4f814 232 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 229 46.555 T 14-09-2016 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154|UniPathway: UPA00904 PAJ_RS08870 3635f610bb1ba69168eb1a8e50f89498 103 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 4 103 18.311 T 14-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PAJ_RS08870 3635f610bb1ba69168eb1a8e50f89498 103 Pfam PF02049 Flagellar hook-basal body complex protein FliE 19 103 6.7E-28 T 14-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PAJ_RS08870 3635f610bb1ba69168eb1a8e50f89498 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 32 48 2.4E-17 T 14-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PAJ_RS08870 3635f610bb1ba69168eb1a8e50f89498 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 88 101 2.4E-17 T 14-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PAJ_RS08870 3635f610bb1ba69168eb1a8e50f89498 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 67 83 2.4E-17 T 14-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PAJ_RS08870 3635f610bb1ba69168eb1a8e50f89498 103 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 3 103 1.7E-27 T 14-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PAJ_RS08870 3635f610bb1ba69168eb1a8e50f89498 103 PANTHER PTHR34653 1 103 3.8E-26 T 14-09-2016 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 SUPERFAMILY SSF54197 4 177 3.7E-73 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 PANTHER PTHR11943:SF2 3 348 1.1E-214 T 14-09-2016 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 Gene3D G3DSA:3.30.428.10 176 345 4.3E-79 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 151 168 - T 14-09-2016 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 1 346 3.3E-203 T 14-09-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 Gene3D G3DSA:3.30.428.10 44 175 4.1E-58 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 3 176 1.9E-70 T 14-09-2016 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 SUPERFAMILY SSF54197 179 345 2.63E-58 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 PANTHER PTHR11943 3 348 1.1E-214 T 14-09-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 PIRSF PIRSF000808 1 341 1.1E-126 T 14-09-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS02900 84d612f96800c3910950bdc08048c9e2 348 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 183 346 9.7E-70 T 14-09-2016 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 PAJ_RS12595 be6e78f6705174bfaffd0e68379898a1 346 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 128 4.1E-31 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS12595 be6e78f6705174bfaffd0e68379898a1 346 SUPERFAMILY SSF51735 138 313 2.17E-42 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12595 be6e78f6705174bfaffd0e68379898a1 346 Gene3D G3DSA:3.90.180.10 1 169 1.2E-54 T 14-09-2016 IPR011032 GroES-like PAJ_RS12595 be6e78f6705174bfaffd0e68379898a1 346 Gene3D G3DSA:3.40.50.720 170 290 1.9E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12595 be6e78f6705174bfaffd0e68379898a1 346 PANTHER PTHR11695:SF526 13 333 1.1E-134 T 14-09-2016 PAJ_RS12595 be6e78f6705174bfaffd0e68379898a1 346 SMART SM00829 8 343 9.1E-9 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS12595 be6e78f6705174bfaffd0e68379898a1 346 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 14-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PAJ_RS12595 be6e78f6705174bfaffd0e68379898a1 346 PANTHER PTHR11695 13 333 1.1E-134 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS12595 be6e78f6705174bfaffd0e68379898a1 346 Pfam PF00107 Zinc-binding dehydrogenase 176 305 2.2E-28 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS12595 be6e78f6705174bfaffd0e68379898a1 346 SUPERFAMILY SSF50129 1 167 1.95E-49 T 14-09-2016 IPR011032 GroES-like PAJ_RS13040 1449c1dab09c010507673680f1d9948f 148 Pfam PF00258 Flavodoxin 6 130 2.8E-22 T 14-09-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 PAJ_RS13040 1449c1dab09c010507673680f1d9948f 148 Gene3D G3DSA:3.40.50.360 1 148 3.7E-35 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS13040 1449c1dab09c010507673680f1d9948f 148 PANTHER PTHR19384 1 144 6.3E-25 T 14-09-2016 PAJ_RS13040 1449c1dab09c010507673680f1d9948f 148 SUPERFAMILY SSF52218 1 148 2.29E-39 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS13040 1449c1dab09c010507673680f1d9948f 148 PRINTS PR00369 Flavodoxin signature 84 94 4.5E-5 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS13040 1449c1dab09c010507673680f1d9948f 148 PRINTS PR00369 Flavodoxin signature 108 127 4.5E-5 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS13040 1449c1dab09c010507673680f1d9948f 148 PRINTS PR00369 Flavodoxin signature 53 64 4.5E-5 T 14-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PAJ_RS03310 2a2ecf7a460eadfaaf8caac9d42fa27b 381 Gene3D G3DSA:2.40.50.100 80 113 2.3E-20 T 14-09-2016 PAJ_RS03310 2a2ecf7a460eadfaaf8caac9d42fa27b 381 Gene3D G3DSA:2.40.50.100 250 282 2.3E-20 T 14-09-2016 PAJ_RS03310 2a2ecf7a460eadfaaf8caac9d42fa27b 381 SUPERFAMILY SSF111369 193 326 1.83E-16 T 14-09-2016 PAJ_RS03310 2a2ecf7a460eadfaaf8caac9d42fa27b 381 PANTHER PTHR30386 44 381 2.4E-87 T 14-09-2016 PAJ_RS03310 2a2ecf7a460eadfaaf8caac9d42fa27b 381 PANTHER PTHR30386:SF7 44 381 2.4E-87 T 14-09-2016 PAJ_RS03310 2a2ecf7a460eadfaaf8caac9d42fa27b 381 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 76 326 1.6E-15 T 14-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PAJ_RS03310 2a2ecf7a460eadfaaf8caac9d42fa27b 381 SUPERFAMILY SSF111369 79 174 4.18E-11 T 14-09-2016 PAJ_RS03310 2a2ecf7a460eadfaaf8caac9d42fa27b 381 Pfam PF00529 HlyD membrane-fusion protein of T1SS 62 373 2.6E-7 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS19780 20bb8506d031f25c7cb73cbf3f6d3751 271 SMART SM00382 33 231 5.7E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS19780 20bb8506d031f25c7cb73cbf3f6d3751 271 PANTHER PTHR24220:SF368 10 261 5.2E-183 T 14-09-2016 PAJ_RS19780 20bb8506d031f25c7cb73cbf3f6d3751 271 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS19780 20bb8506d031f25c7cb73cbf3f6d3751 271 SUPERFAMILY SSF52540 8 236 6.19E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19780 20bb8506d031f25c7cb73cbf3f6d3751 271 Gene3D G3DSA:3.40.50.300 5 238 2.6E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19780 20bb8506d031f25c7cb73cbf3f6d3751 271 Pfam PF00005 ABC transporter 25 172 1.1E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS19780 20bb8506d031f25c7cb73cbf3f6d3751 271 PANTHER PTHR24220 10 261 5.2E-183 T 14-09-2016 PAJ_RS11345 d7b9fdf55ab18f83e04e7881b07ce5d2 226 SUPERFAMILY SSF46894 125 225 2.83E-24 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS11345 d7b9fdf55ab18f83e04e7881b07ce5d2 226 Gene3D G3DSA:1.10.10.10 127 225 3.7E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11345 d7b9fdf55ab18f83e04e7881b07ce5d2 226 Gene3D G3DSA:3.40.50.2300 1 126 3.2E-34 T 14-09-2016 PAJ_RS11345 d7b9fdf55ab18f83e04e7881b07ce5d2 226 SMART SM00448 1 111 2.4E-36 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS11345 d7b9fdf55ab18f83e04e7881b07ce5d2 226 PANTHER PTHR26402:SF292 1 226 4.0E-77 T 14-09-2016 PAJ_RS11345 d7b9fdf55ab18f83e04e7881b07ce5d2 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 2.9E-20 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS11345 d7b9fdf55ab18f83e04e7881b07ce5d2 226 Pfam PF00072 Response regulator receiver domain 3 111 6.6E-21 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS11345 d7b9fdf55ab18f83e04e7881b07ce5d2 226 PANTHER PTHR26402 1 226 4.0E-77 T 14-09-2016 PAJ_RS11345 d7b9fdf55ab18f83e04e7881b07ce5d2 226 SUPERFAMILY SSF52172 1 128 7.54E-36 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS11345 d7b9fdf55ab18f83e04e7881b07ce5d2 226 SMART SM00862 149 225 3.5E-20 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 SUPERFAMILY SSF53067 160 398 7.38E-85 T 14-09-2016 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 PRINTS PR00471 Acetate kinase family signature 6 17 8.7E-48 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 PRINTS PR00471 Acetate kinase family signature 325 341 8.7E-48 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 PRINTS PR00471 Acetate kinase family signature 206 227 8.7E-48 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 PRINTS PR00471 Acetate kinase family signature 176 189 8.7E-48 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 PRINTS PR00471 Acetate kinase family signature 302 315 8.7E-48 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 PRINTS PR00471 Acetate kinase family signature 380 392 8.7E-48 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 Pfam PF00871 Acetokinase family 6 393 2.1E-171 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 14-09-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 PANTHER PTHR21060:SF15 2 398 1.9E-275 T 14-09-2016 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 PANTHER PTHR21060 2 398 1.9E-275 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 Gene3D G3DSA:3.30.420.40 208 398 2.2E-73 T 14-09-2016 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 Gene3D G3DSA:3.30.420.40 5 207 1.5E-9 T 14-09-2016 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 Hamap MF_00020 Acetate kinase [ackA]. 1 400 184.26 T 14-09-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 TIGRFAM TIGR00016 ackA: acetate kinase 1 399 2.2E-181 T 14-09-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 SUPERFAMILY SSF53067 4 199 2.46E-61 T 14-09-2016 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 PIRSF PIRSF000722 2 400 2.8E-142 T 14-09-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS10665 9acfbd81d315d68b9ee65665fbbdde5a 400 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 14-09-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 107 118 - T 14-09-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 293 321 - T 14-09-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 PANTHER PTHR23132 1 365 9.3E-172 T 14-09-2016 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 Gene3D G3DSA:3.30.470.20 224 363 1.3E-54 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 PIRSF PIRSF039102 1 359 3.2E-130 T 14-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 Gene3D G3DSA:3.40.50.20 1 129 2.4E-36 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 Pfam PF07478 D-ala D-ala ligase C-terminus 147 348 7.2E-77 T 14-09-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 SUPERFAMILY SSF52440 3 139 3.36E-35 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 Gene3D G3DSA:3.30.1490.20 158 223 2.6E-25 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 Pfam PF01820 D-ala D-ala ligase N-terminus 5 130 2.6E-31 T 14-09-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 351 42.749 T 14-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 350 2.2E-112 T 14-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 PANTHER PTHR23132:SF8 1 365 9.3E-172 T 14-09-2016 PAJ_RS14915 2579886ec2201e3d72a698f1b1ae58ce 365 SUPERFAMILY SSF56059 140 357 1.94E-63 T 14-09-2016 PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 10 438 7.6E-195 T 14-09-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 SUPERFAMILY SSF102114 110 372 7.06E-55 T 14-09-2016 PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 145 165 - T 14-09-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 PANTHER PTHR11918 3 440 5.1E-246 T 14-09-2016 IPR023970 Methylthiotransferase/radical SAM-type protein PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 PANTHER PTHR11918:SF57 3 440 5.1E-246 T 14-09-2016 PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 9 441 62.997 T 14-09-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 Pfam PF04055 Radical SAM superfamily 147 324 2.0E-31 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 10 439 2.5E-108 T 14-09-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 SMART SM00729 141 366 1.2E-53 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 Pfam PF00919 Uncharacterized protein family UPF0004 10 91 1.1E-20 T 14-09-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 Gene3D G3DSA:3.80.30.20 139 378 3.7E-76 T 14-09-2016 IPR023404 Radical SAM, alpha/beta horseshoe PAJ_RS03375 1511592359d7bc7ef50e3f537f54b00d 442 Gene3D G3DSA:2.40.50.140 381 440 7.8E-25 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS08420 9e0d44eb2bdd257c5e89e925f4daed3a 322 PANTHER PTHR10108:SF847 46 321 4.8E-133 T 14-09-2016 PAJ_RS08420 9e0d44eb2bdd257c5e89e925f4daed3a 322 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 7 320 3.2E-145 T 14-09-2016 IPR010017 tRNA (mo5U34)-methyltransferase GO:0002098|GO:0016300 PAJ_RS08420 9e0d44eb2bdd257c5e89e925f4daed3a 322 Gene3D G3DSA:3.40.50.150 92 314 3.1E-29 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08420 9e0d44eb2bdd257c5e89e925f4daed3a 322 Pfam PF08003 Protein of unknown function (DUF1698) 7 321 3.3E-161 T 14-09-2016 IPR027555 tRNA (mo5U34)-methyltransferase-like PAJ_RS08420 9e0d44eb2bdd257c5e89e925f4daed3a 322 SUPERFAMILY SSF53335 90 322 9.62E-35 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08420 9e0d44eb2bdd257c5e89e925f4daed3a 322 Hamap MF_01590 tRNA (mo5U34)-methyltransferase [cmoB]. 12 321 53.694 T 14-09-2016 IPR010017 tRNA (mo5U34)-methyltransferase GO:0002098|GO:0016300 PAJ_RS08420 9e0d44eb2bdd257c5e89e925f4daed3a 322 PANTHER PTHR10108 46 321 4.8E-133 T 14-09-2016 PAJ_RS00430 284163c962214a6b52296e7d5f8d280b 467 Gene3D G3DSA:1.20.1250.20 225 395 4.3E-9 T 14-09-2016 PAJ_RS00430 284163c962214a6b52296e7d5f8d280b 467 PANTHER PTHR11328:SF24 1 460 7.4E-169 T 14-09-2016 PAJ_RS00430 284163c962214a6b52296e7d5f8d280b 467 SUPERFAMILY SSF103473 13 422 4.58E-40 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS00430 284163c962214a6b52296e7d5f8d280b 467 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 62 87 - T 14-09-2016 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 PAJ_RS00430 284163c962214a6b52296e7d5f8d280b 467 Pfam PF13347 MFS/sugar transport protein 13 432 1.3E-106 T 14-09-2016 PAJ_RS00430 284163c962214a6b52296e7d5f8d280b 467 Gene3D G3DSA:1.20.1250.20 19 208 3.8E-17 T 14-09-2016 PAJ_RS00430 284163c962214a6b52296e7d5f8d280b 467 PANTHER PTHR11328 1 460 7.4E-169 T 14-09-2016 PAJ_RS00430 284163c962214a6b52296e7d5f8d280b 467 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 11 444 1.6E-125 T 14-09-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 PAJ_RS03670 d8501204299cd0fae4c96a5dd7174d88 249 PANTHER PTHR21485 1 248 4.2E-120 T 14-09-2016 PAJ_RS03670 d8501204299cd0fae4c96a5dd7174d88 249 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 240 2.4E-124 T 14-09-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 PAJ_RS03670 d8501204299cd0fae4c96a5dd7174d88 249 Pfam PF02348 Cytidylyltransferase 4 221 2.3E-68 T 14-09-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 PAJ_RS03670 d8501204299cd0fae4c96a5dd7174d88 249 SUPERFAMILY SSF53448 3 246 1.85E-67 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS03670 d8501204299cd0fae4c96a5dd7174d88 249 PANTHER PTHR21485:SF4 1 248 4.2E-120 T 14-09-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 PAJ_RS03670 d8501204299cd0fae4c96a5dd7174d88 249 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 45.571 T 14-09-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 PAJ_RS03670 d8501204299cd0fae4c96a5dd7174d88 249 Gene3D G3DSA:3.90.550.10 1 248 2.6E-85 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS00670 40fc289ace01c000da80e98c9ed6a9e1 130 Pfam PF11944 Protein of unknown function (DUF3461) 1 125 5.3E-57 T 14-09-2016 IPR020911 Uncharacterised protein family UPF0325 PAJ_RS00670 40fc289ace01c000da80e98c9ed6a9e1 130 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 126 32.308 T 14-09-2016 IPR020911 Uncharacterised protein family UPF0325 PAJ_RS00670 40fc289ace01c000da80e98c9ed6a9e1 130 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 125 1.0E-61 T 14-09-2016 IPR020911 Uncharacterised protein family UPF0325 PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 Pfam PF01979 Amidohydrolase family 71 432 3.7E-71 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 SUPERFAMILY SSF51556 73 376 4.99E-98 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 Gene3D G3DSA:2.30.40.10 362 435 2.2E-7 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 SUPERFAMILY SSF51338 420 435 1.39E-10 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 SUPERFAMILY SSF51338 26 73 1.39E-10 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 SUPERFAMILY SSF51338 375 391 1.39E-10 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 Gene3D G3DSA:2.30.40.10 31 81 2.0E-10 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 31 429 2.0E-178 T 14-09-2016 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|UniPathway: UPA00603 PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 PANTHER PTHR11271 26 440 2.7E-162 T 14-09-2016 PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 PANTHER PTHR11271:SF6 26 440 2.7E-162 T 14-09-2016 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|UniPathway: UPA00603 PAJ_RS07190 a151ff3e0b349fdcc0f73d6dd069d8c7 442 Gene3D G3DSA:3.20.20.140 82 361 6.2E-113 T 14-09-2016 PAJ_RS15190 4cd41b5557d9410596af8b6d41a24d5f 298 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 285 1.1E-26 T 14-09-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 PAJ_RS15190 4cd41b5557d9410596af8b6d41a24d5f 298 Hamap MF_01913 3-sulfolactaldehyde reductase. 1 292 60.836 T 14-09-2016 IPR030876 3-sulfolactaldehyde reductase GO:0061596|GO:1902777 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|MetaCyc: PWY-7446 PAJ_RS15190 4cd41b5557d9410596af8b6d41a24d5f 298 Gene3D G3DSA:1.10.1040.10 164 291 1.7E-36 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS15190 4cd41b5557d9410596af8b6d41a24d5f 298 SUPERFAMILY SSF51735 3 162 2.87E-38 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15190 4cd41b5557d9410596af8b6d41a24d5f 298 Gene3D G3DSA:3.40.50.720 3 163 2.1E-49 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15190 4cd41b5557d9410596af8b6d41a24d5f 298 PANTHER PTHR22981 4 292 3.2E-83 T 14-09-2016 PAJ_RS15190 4cd41b5557d9410596af8b6d41a24d5f 298 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 14-09-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 PAJ_RS15190 4cd41b5557d9410596af8b6d41a24d5f 298 PIRSF PIRSF000103 1 294 2.0E-92 T 14-09-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 PAJ_RS15190 4cd41b5557d9410596af8b6d41a24d5f 298 SUPERFAMILY SSF48179 163 286 2.15E-31 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS15190 4cd41b5557d9410596af8b6d41a24d5f 298 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 159 3.1E-42 T 14-09-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 PAJ_RS00605 df1755b49c4e2b5e362aecee6bf182bb 734 PANTHER PTHR32552:SF17 37 42 1.0E-208 T 14-09-2016 PAJ_RS00605 df1755b49c4e2b5e362aecee6bf182bb 734 PANTHER PTHR32552:SF17 69 734 1.0E-208 T 14-09-2016 PAJ_RS00605 df1755b49c4e2b5e362aecee6bf182bb 734 Gene3D G3DSA:2.170.130.10 39 191 1.3E-37 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS00605 df1755b49c4e2b5e362aecee6bf182bb 734 SUPERFAMILY SSF56935 58 734 6.02E-138 T 14-09-2016 PAJ_RS00605 df1755b49c4e2b5e362aecee6bf182bb 734 PANTHER PTHR32552 37 42 1.0E-208 T 14-09-2016 PAJ_RS00605 df1755b49c4e2b5e362aecee6bf182bb 734 PANTHER PTHR32552 69 734 1.0E-208 T 14-09-2016 PAJ_RS00605 df1755b49c4e2b5e362aecee6bf182bb 734 Gene3D G3DSA:2.40.170.20 194 734 4.3E-165 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS00605 df1755b49c4e2b5e362aecee6bf182bb 734 Pfam PF07715 TonB-dependent Receptor Plug Domain 78 180 4.1E-22 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS00605 df1755b49c4e2b5e362aecee6bf182bb 734 Pfam PF00593 TonB dependent receptor 489 732 1.6E-28 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS00605 df1755b49c4e2b5e362aecee6bf182bb 734 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 81 734 3.2E-154 T 14-09-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PAJ_RS12585 f7854f78110a946332b51c69cbde5e9a 451 Pfam PF13091 PLD-like domain 257 403 2.4E-22 T 14-09-2016 IPR025202 Phospholipase D-like domain PAJ_RS12585 f7854f78110a946332b51c69cbde5e9a 451 PANTHER PTHR12586 1 450 1.0E-260 T 14-09-2016 IPR016270 Phospholipase D, phosphatidylserine synthase type GO:0008654|GO:0016780 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PAJ_RS12585 f7854f78110a946332b51c69cbde5e9a 451 SUPERFAMILY SSF56024 9 207 2.23E-26 T 14-09-2016 PAJ_RS12585 f7854f78110a946332b51c69cbde5e9a 451 SMART SM00155 352 379 0.002 T 14-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PAJ_RS12585 f7854f78110a946332b51c69cbde5e9a 451 SMART SM00155 133 159 0.029 T 14-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PAJ_RS12585 f7854f78110a946332b51c69cbde5e9a 451 SUPERFAMILY SSF56024 253 402 1.35E-19 T 14-09-2016 PAJ_RS12585 f7854f78110a946332b51c69cbde5e9a 451 Gene3D G3DSA:3.30.870.10 254 404 6.7E-15 T 14-09-2016 PAJ_RS12585 f7854f78110a946332b51c69cbde5e9a 451 Gene3D G3DSA:3.30.870.10 26 197 2.3E-15 T 14-09-2016 PAJ_RS12585 f7854f78110a946332b51c69cbde5e9a 451 PANTHER PTHR12586:SF3 1 450 1.0E-260 T 14-09-2016 PAJ_RS12585 f7854f78110a946332b51c69cbde5e9a 451 PIRSF PIRSF000850 1 451 8.1E-247 T 14-09-2016 IPR016270 Phospholipase D, phosphatidylserine synthase type GO:0008654|GO:0016780 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PAJ_RS08430 9240dcdd01d48c767fbb3a7185fdb2b5 364 Gene3D G3DSA:3.40.50.1970 1 157 5.4E-45 T 14-09-2016 PAJ_RS08430 9240dcdd01d48c767fbb3a7185fdb2b5 364 PANTHER PTHR11496 1 362 2.2E-150 T 14-09-2016 PAJ_RS08430 9240dcdd01d48c767fbb3a7185fdb2b5 364 PIRSF PIRSF000112 2 361 1.9E-100 T 14-09-2016 PAJ_RS08430 9240dcdd01d48c767fbb3a7185fdb2b5 364 SUPERFAMILY SSF56796 2 354 2.49E-88 T 14-09-2016 PAJ_RS08430 9240dcdd01d48c767fbb3a7185fdb2b5 364 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 325 1.2E-64 T 14-09-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 PAJ_RS08430 9240dcdd01d48c767fbb3a7185fdb2b5 364 Gene3D G3DSA:1.20.1090.10 160 362 1.4E-59 T 14-09-2016 PAJ_RS08430 9240dcdd01d48c767fbb3a7185fdb2b5 364 PANTHER PTHR11496:SF57 1 362 2.2E-150 T 14-09-2016 PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 247 1.9E-59 T 14-09-2016 PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PANTHER PTHR24322 157 193 2.2E-69 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.3E-12 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 6.3E-12 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 6.3E-12 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 SUPERFAMILY SSF51735 6 249 1.03E-76 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PANTHER PTHR24322:SF402 157 193 2.2E-69 T 14-09-2016 PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PANTHER PTHR24322:SF402 11 141 2.2E-69 T 14-09-2016 PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PANTHER PTHR24322 11 141 2.2E-69 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.5E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.5E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.5E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.5E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.5E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.5E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS03075 4cf40947d6b498f28aca5d814d81324c 257 Gene3D G3DSA:3.40.50.720 5 250 1.5E-75 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS01670 810181591efee2be4030235777cea7a8 295 Pfam PF01040 UbiA prenyltransferase family 18 266 1.4E-58 T 14-09-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 PAJ_RS01670 810181591efee2be4030235777cea7a8 295 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 1 283 18.031 T 14-09-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 PAJ_RS01670 810181591efee2be4030235777cea7a8 295 PANTHER PTHR11048:SF20 1 295 3.2E-156 T 14-09-2016 PAJ_RS01670 810181591efee2be4030235777cea7a8 295 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 56 78 - T 14-09-2016 IPR030470 UbiA prenyltransferase conserved site PAJ_RS01670 810181591efee2be4030235777cea7a8 295 PANTHER PTHR11048 1 295 3.2E-156 T 14-09-2016 PAJ_RS01670 810181591efee2be4030235777cea7a8 295 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 3 281 2.1E-90 T 14-09-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 Gene3D G3DSA:1.10.10.10 166 231 1.1E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 Gene3D G3DSA:2.60.120.10 14 165 4.8E-39 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 SMART SM00419 183 231 4.3E-13 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 Pfam PF00027 Cyclic nucleotide-binding domain 47 128 8.6E-16 T 14-09-2016 IPR000595 Cyclic nucleotide-binding domain PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 SUPERFAMILY SSF51206 19 158 7.86E-31 T 14-09-2016 IPR018490 Cyclic nucleotide-binding-like PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 SMART SM00100 26 147 9.3E-23 T 14-09-2016 IPR000595 Cyclic nucleotide-binding domain PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 SUPERFAMILY SSF46785 161 240 4.06E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 Pfam PF13545 Crp-like helix-turn-helix domain 164 236 2.8E-16 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 189 205 2.2E-12 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 205 220 2.2E-12 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 ProSitePatterns PS00042 Crp-type HTH domain signature. 191 214 - T 14-09-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 PANTHER PTHR24567:SF28 3 241 3.2E-129 T 14-09-2016 PAJ_RS07330 653483dea96ae95057023a282aac3e1a 246 PANTHER PTHR24567 3 241 3.2E-129 T 14-09-2016 PAJ_RS05410 678fa3568641764f30fdc64aca967f8e 654 SMART SM01204 265 390 2.6E-23 T 14-09-2016 IPR019494 FIST, C-domain PAJ_RS05410 678fa3568641764f30fdc64aca967f8e 654 Pfam PF10442 FIST C domain 267 387 4.8E-13 T 14-09-2016 IPR019494 FIST, C-domain PAJ_RS05410 678fa3568641764f30fdc64aca967f8e 654 SMART SM00283 419 645 3.3E-18 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS05410 678fa3568641764f30fdc64aca967f8e 654 PANTHER PTHR32089 475 643 1.1E-25 T 14-09-2016 PAJ_RS05410 678fa3568641764f30fdc64aca967f8e 654 Gene3D G3DSA:1.10.287.950 444 643 8.7E-35 T 14-09-2016 PAJ_RS05410 678fa3568641764f30fdc64aca967f8e 654 SUPERFAMILY SSF58104 439 645 8.24E-38 T 14-09-2016 PAJ_RS05410 678fa3568641764f30fdc64aca967f8e 654 SMART SM00897 45 259 1.3E-25 T 14-09-2016 IPR013702 FIST domain, N-terminal PAJ_RS05410 678fa3568641764f30fdc64aca967f8e 654 Pfam PF08495 FIST N domain 50 246 7.1E-18 T 14-09-2016 IPR013702 FIST domain, N-terminal PAJ_RS05410 678fa3568641764f30fdc64aca967f8e 654 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 465 645 9.8E-27 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS03445 93a9414c7a10e4624aa0cead4ca69064 377 PANTHER PTHR24220 21 331 9.6E-201 T 14-09-2016 PAJ_RS03445 93a9414c7a10e4624aa0cead4ca69064 377 SMART SM00382 44 227 6.0E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03445 93a9414c7a10e4624aa0cead4ca69064 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 375 4.2E-148 T 14-09-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 PAJ_RS03445 93a9414c7a10e4624aa0cead4ca69064 377 Pfam PF08402 TOBE domain 295 375 5.9E-21 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PAJ_RS03445 93a9414c7a10e4624aa0cead4ca69064 377 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03445 93a9414c7a10e4624aa0cead4ca69064 377 Gene3D G3DSA:3.40.50.300 10 255 4.0E-85 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03445 93a9414c7a10e4624aa0cead4ca69064 377 SUPERFAMILY SSF52540 19 256 2.6E-87 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03445 93a9414c7a10e4624aa0cead4ca69064 377 SUPERFAMILY SSF50331 252 375 4.42E-17 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS03445 93a9414c7a10e4624aa0cead4ca69064 377 Pfam PF00005 ABC transporter 36 177 3.3E-39 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03445 93a9414c7a10e4624aa0cead4ca69064 377 PANTHER PTHR24220:SF481 21 331 9.6E-201 T 14-09-2016 PAJ_RS07465 a45120762f57156b72208e8ac8fb7ed9 355 PANTHER PTHR39342:SF1 1 355 2.7E-134 T 14-09-2016 PAJ_RS07465 a45120762f57156b72208e8ac8fb7ed9 355 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 57 342 6.3E-131 T 14-09-2016 IPR006507 Uncharacterised protein family UPF0283 PAJ_RS07465 a45120762f57156b72208e8ac8fb7ed9 355 PANTHER PTHR39342 1 355 2.7E-134 T 14-09-2016 PAJ_RS07465 a45120762f57156b72208e8ac8fb7ed9 355 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 4 348 38.009 T 14-09-2016 IPR006507 Uncharacterised protein family UPF0283 PAJ_RS07465 a45120762f57156b72208e8ac8fb7ed9 355 Pfam PF05128 Domain of unknown function (DUF697) 184 342 5.9E-55 T 14-09-2016 IPR021147 Protein of unknown function DUF697 PAJ_RS05665 de8614e7690f115109f1d78aeb9957f7 343 Gene3D G3DSA:3.40.630.30 114 132 2.8E-5 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05665 de8614e7690f115109f1d78aeb9957f7 343 Gene3D G3DSA:3.40.630.30 1 79 2.8E-5 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05665 de8614e7690f115109f1d78aeb9957f7 343 Gene3D G3DSA:2.40.40.20 273 336 2.5E-12 T 14-09-2016 PAJ_RS05665 de8614e7690f115109f1d78aeb9957f7 343 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 336 2.7E-152 T 14-09-2016 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109|UniPathway: UPA00185 PAJ_RS05665 de8614e7690f115109f1d78aeb9957f7 343 PANTHER PTHR30420 1 343 2.6E-186 T 14-09-2016 PAJ_RS05665 de8614e7690f115109f1d78aeb9957f7 343 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 334 5.7E-141 T 14-09-2016 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109|UniPathway: UPA00185 PAJ_RS05665 de8614e7690f115109f1d78aeb9957f7 343 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 336 1.5E-141 T 14-09-2016 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109|UniPathway: UPA00185 PAJ_RS05665 de8614e7690f115109f1d78aeb9957f7 343 SUPERFAMILY SSF55729 1 336 9.86E-131 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05665 de8614e7690f115109f1d78aeb9957f7 343 PANTHER PTHR30420:SF1 1 343 2.6E-186 T 14-09-2016 PAJ_RS02440 a0212310680c2f55ec133bfc6584ca29 370 PANTHER PTHR30474 1 370 2.0E-179 T 14-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 PAJ_RS02440 a0212310680c2f55ec133bfc6584ca29 370 PANTHER PTHR30474:SF1 1 370 2.0E-179 T 14-09-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 PAJ_RS02440 a0212310680c2f55ec133bfc6584ca29 370 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 2.1E-137 T 14-09-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 PAJ_RS02440 a0212310680c2f55ec133bfc6584ca29 370 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 14-09-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 PAJ_RS02440 a0212310680c2f55ec133bfc6584ca29 370 Pfam PF01098 Cell cycle protein 21 364 4.4E-124 T 14-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 PAJ_RS14950 bbb97cc251b7bf968f129843be818b4a 372 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 299 305 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS14950 bbb97cc251b7bf968f129843be818b4a 372 PIRSF PIRSF037565 1 371 3.9E-160 T 14-09-2016 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS14950 bbb97cc251b7bf968f129843be818b4a 372 PANTHER PTHR18895 76 371 5.0E-147 T 14-09-2016 PAJ_RS14950 bbb97cc251b7bf968f129843be818b4a 372 PANTHER PTHR18895:SF6 76 371 5.0E-147 T 14-09-2016 PAJ_RS14950 bbb97cc251b7bf968f129843be818b4a 372 SUPERFAMILY SSF53335 194 370 2.76E-24 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS14950 bbb97cc251b7bf968f129843be818b4a 372 Pfam PF05175 Methyltransferase small domain 196 367 3.1E-57 T 14-09-2016 IPR007848 Methyltransferase small domain GO:0008168 PAJ_RS14950 bbb97cc251b7bf968f129843be818b4a 372 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 370 49.786 T 14-09-2016 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS14950 bbb97cc251b7bf968f129843be818b4a 372 Gene3D G3DSA:3.40.50.150 189 370 9.1E-24 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS01640 4dd232f0857c4f95c272cd0374b26aa8 306 SUPERFAMILY SSF48179 168 289 1.12E-32 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS01640 4dd232f0857c4f95c272cd0374b26aa8 306 PANTHER PTHR21708 1 300 2.9E-75 T 14-09-2016 PAJ_RS01640 4dd232f0857c4f95c272cd0374b26aa8 306 PANTHER PTHR21708:SF24 1 300 2.9E-75 T 14-09-2016 PAJ_RS01640 4dd232f0857c4f95c272cd0374b26aa8 306 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 143 7.1E-21 T 14-09-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PAJ_RS01640 4dd232f0857c4f95c272cd0374b26aa8 306 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 168 289 2.3E-32 T 14-09-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PAJ_RS01640 4dd232f0857c4f95c272cd0374b26aa8 306 Gene3D G3DSA:1.10.1040.10 175 290 2.1E-38 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS01640 4dd232f0857c4f95c272cd0374b26aa8 306 Gene3D G3DSA:3.40.50.720 1 174 1.0E-42 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS01640 4dd232f0857c4f95c272cd0374b26aa8 306 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 290 1.5E-67 T 14-09-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PAJ_RS01640 4dd232f0857c4f95c272cd0374b26aa8 306 SUPERFAMILY SSF51735 1 167 3.1E-51 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10510 9c1400018acf96081996df574b171563 216 SUPERFAMILY SSF52172 3 136 1.38E-21 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS10510 9c1400018acf96081996df574b171563 216 PANTHER PTHR26402:SF510 4 214 3.8E-152 T 14-09-2016 PAJ_RS10510 9c1400018acf96081996df574b171563 216 Hamap MF_00981 Transcriptional regulatory protein RcsB [rcsB]. 1 214 51.091 T 14-09-2016 IPR030864 Transcriptional regulatory protein RcsB GO:0000160|GO:0006355 PAJ_RS10510 9c1400018acf96081996df574b171563 216 Pfam PF00072 Response regulator receiver domain 6 120 1.2E-24 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS10510 9c1400018acf96081996df574b171563 216 SUPERFAMILY SSF46894 145 206 2.07E-16 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS10510 9c1400018acf96081996df574b171563 216 Gene3D G3DSA:1.10.10.10 126 205 1.3E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10510 9c1400018acf96081996df574b171563 216 SMART SM00421 148 205 2.0E-15 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS10510 9c1400018acf96081996df574b171563 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 2.4E-18 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS10510 9c1400018acf96081996df574b171563 216 SMART SM00448 4 120 2.6E-13 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS10510 9c1400018acf96081996df574b171563 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS10510 9c1400018acf96081996df574b171563 216 Gene3D G3DSA:3.40.50.2300 2 125 1.9E-21 T 14-09-2016 PAJ_RS10510 9c1400018acf96081996df574b171563 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 4.0E-8 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS10510 9c1400018acf96081996df574b171563 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 4.0E-8 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS10510 9c1400018acf96081996df574b171563 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 4.0E-8 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS10510 9c1400018acf96081996df574b171563 216 PANTHER PTHR26402 4 214 3.8E-152 T 14-09-2016 PAJ_RS06000 621399381312718780c29d7db04fdcd4 288 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 233 1.9E-39 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS06000 621399381312718780c29d7db04fdcd4 288 Gene3D G3DSA:2.40.50.100 154 187 1.3E-17 T 14-09-2016 PAJ_RS06000 621399381312718780c29d7db04fdcd4 288 Gene3D G3DSA:2.40.50.100 48 80 1.3E-17 T 14-09-2016 PAJ_RS06000 621399381312718780c29d7db04fdcd4 288 SUPERFAMILY SSF111369 45 214 6.67E-25 T 14-09-2016 PAJ_RS06000 621399381312718780c29d7db04fdcd4 288 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 46 233 8.0E-16 T 14-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PAJ_RS06000 621399381312718780c29d7db04fdcd4 288 PANTHER PTHR30367 4 288 2.1E-119 T 14-09-2016 PAJ_RS06000 621399381312718780c29d7db04fdcd4 288 PANTHER PTHR30367:SF5 4 288 2.1E-119 T 14-09-2016 PAJ_RS15565 39ab46fe813bb348a4276494edbac1e7 200 Pfam PF01794 Ferric reductase like transmembrane component 48 161 5.2E-15 T 14-09-2016 IPR013130 Ferric reductase transmembrane component-like domain PAJ_RS15565 39ab46fe813bb348a4276494edbac1e7 200 Hamap MF_01207 Sulfoxide reductase heme-binding subunit YedZ [yedZ]. 1 199 23.645 T 14-09-2016 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 PAJ_RS15565 39ab46fe813bb348a4276494edbac1e7 200 PANTHER PTHR36964 1 200 1.4E-69 T 14-09-2016 PAJ_RS11860 791114f98755955d28703c68df78e731 424 PANTHER PTHR11476:SF9 2 424 2.2E-232 T 14-09-2016 PAJ_RS11860 791114f98755955d28703c68df78e731 424 Gene3D G3DSA:3.30.930.10 221 320 8.1E-96 T 14-09-2016 PAJ_RS11860 791114f98755955d28703c68df78e731 424 Gene3D G3DSA:3.30.930.10 4 185 8.1E-96 T 14-09-2016 PAJ_RS11860 791114f98755955d28703c68df78e731 424 Gene3D G3DSA:3.40.50.800 328 422 2.7E-31 T 14-09-2016 IPR004154 Anticodon-binding PAJ_RS11860 791114f98755955d28703c68df78e731 424 Pfam PF13393 Histidyl-tRNA synthetase 10 312 1.7E-44 T 14-09-2016 PAJ_RS11860 791114f98755955d28703c68df78e731 424 PANTHER PTHR11476 2 424 2.2E-232 T 14-09-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 PAJ_RS11860 791114f98755955d28703c68df78e731 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 421 33.516 T 14-09-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 PAJ_RS11860 791114f98755955d28703c68df78e731 424 SUPERFAMILY SSF52954 328 423 2.29E-25 T 14-09-2016 IPR004154 Anticodon-binding PAJ_RS11860 791114f98755955d28703c68df78e731 424 Pfam PF03129 Anticodon binding domain 330 420 1.6E-11 T 14-09-2016 IPR004154 Anticodon-binding PAJ_RS11860 791114f98755955d28703c68df78e731 424 SUPERFAMILY SSF55681 5 318 5.18E-102 T 14-09-2016 PAJ_RS11860 791114f98755955d28703c68df78e731 424 PIRSF PIRSF001549 2 423 2.5E-125 T 14-09-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 PAJ_RS11860 791114f98755955d28703c68df78e731 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 411 8.6E-156 T 14-09-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 PANTHER PTHR11958:SF26 1 431 2.6E-247 T 14-09-2016 IPR033380 Glutamate-aspartate symport protein GltP/GltT GO:0015293|GO:0015810|GO:0015813|GO:0016021 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 PANTHER PTHR11958 1 431 2.6E-247 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 14-09-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 Pfam PF00375 Sodium:dicarboxylate symporter family 8 411 1.3E-119 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 14-09-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 1.1E-51 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 1.1E-51 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 PRINTS PR00173 Glutamate-aspartate symporter signature 365 385 1.1E-51 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 1.1E-51 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 1.1E-51 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 1.1E-51 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 1.1E-51 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 1.1E-51 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 SUPERFAMILY SSF118215 8 412 1.07E-123 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS19100 1d83e2f912f55aa442dd639c3dccd748 433 Gene3D G3DSA:1.10.3860.10 4 416 1.7E-130 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS11195 d9144d77dafd2595cf12d30cb1e3c436 329 SUPERFAMILY SSF51430 13 327 2.23E-88 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS11195 d9144d77dafd2595cf12d30cb1e3c436 329 Pfam PF00248 Aldo/keto reductase family 28 327 4.0E-66 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS11195 d9144d77dafd2595cf12d30cb1e3c436 329 PANTHER PTHR11732 13 328 3.0E-176 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PAJ_RS11195 d9144d77dafd2595cf12d30cb1e3c436 329 PANTHER PTHR11732:SF191 13 328 3.0E-176 T 14-09-2016 PAJ_RS11195 d9144d77dafd2595cf12d30cb1e3c436 329 Gene3D G3DSA:3.20.20.100 13 327 2.5E-86 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS08410 9a92ea0fe6a0e83841c616993a430bd6 131 Gene3D G3DSA:1.20.120.550 4 127 2.1E-24 T 14-09-2016 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain PAJ_RS08410 9a92ea0fe6a0e83841c616993a430bd6 131 PANTHER PTHR35814 1 130 1.2E-45 T 14-09-2016 PAJ_RS08410 9a92ea0fe6a0e83841c616993a430bd6 131 Pfam PF01124 MAPEG family 3 118 8.2E-26 T 14-09-2016 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein PAJ_RS08410 9a92ea0fe6a0e83841c616993a430bd6 131 SUPERFAMILY SSF161084 4 127 8.11E-30 T 14-09-2016 PAJ_RS08410 9a92ea0fe6a0e83841c616993a430bd6 131 PANTHER PTHR35814:SF2 1 130 1.2E-45 T 14-09-2016 PAJ_RS14825 1117cc8bd857fe4d1c540f5e4796b0cb 492 Pfam PF01740 STAS domain 398 483 6.6E-11 T 14-09-2016 IPR002645 STAS domain PAJ_RS14825 1117cc8bd857fe4d1c540f5e4796b0cb 492 PANTHER PTHR11814:SF76 8 486 1.3E-271 T 14-09-2016 PAJ_RS14825 1117cc8bd857fe4d1c540f5e4796b0cb 492 Gene3D G3DSA:3.30.750.24 390 480 8.8E-9 T 14-09-2016 IPR002645 STAS domain PAJ_RS14825 1117cc8bd857fe4d1c540f5e4796b0cb 492 SUPERFAMILY SSF52091 387 481 1.49E-13 T 14-09-2016 IPR002645 STAS domain PAJ_RS14825 1117cc8bd857fe4d1c540f5e4796b0cb 492 Pfam PF00916 Sulfate permease family 15 144 1.2E-28 T 14-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 PAJ_RS14825 1117cc8bd857fe4d1c540f5e4796b0cb 492 Pfam PF00916 Sulfate permease family 165 343 1.3E-26 T 14-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 PAJ_RS14825 1117cc8bd857fe4d1c540f5e4796b0cb 492 PANTHER PTHR11814 8 486 1.3E-271 T 14-09-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PANTHER PTHR11624:SF67 554 769 0.0 T 14-09-2016 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 SUPERFAMILY SSF52518 475 702 2.12E-96 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 Gene3D G3DSA:3.40.50.920 708 886 5.2E-77 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 Gene3D G3DSA:3.40.50.970 474 706 5.9E-118 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PANTHER PTHR11624:SF67 788 870 0.0 T 14-09-2016 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 SUPERFAMILY SSF52922 703 886 2.62E-63 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PANTHER PTHR11624:SF67 473 536 0.0 T 14-09-2016 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PANTHER PTHR11624 473 536 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 107 295 5.3E-9 T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 362 427 4.1E-5 T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 887 0.0 T 14-09-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PIRSF PIRSF000156 1 888 0.0 T 14-09-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PANTHER PTHR11624 554 769 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PANTHER PTHR11624 788 870 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 SUPERFAMILY SSF52518 59 470 1.47E-143 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PANTHER PTHR11624:SF67 364 453 0.0 T 14-09-2016 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 Gene3D G3DSA:3.40.50.970 60 470 6.6E-156 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PANTHER PTHR11624 76 295 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PANTHER PTHR11624:SF67 76 295 0.0 T 14-09-2016 PAJ_RS00445 ea7726d8d84b9d30b945abfbd05a374d 888 PANTHER PTHR11624 364 453 0.0 T 14-09-2016 IPR033247 Transketolase family PAJ_RS19950 df744e5e834b377328909cfa48c18aaf 331 PANTHER PTHR30217 240 330 4.3E-208 T 14-09-2016 PAJ_RS19950 df744e5e834b377328909cfa48c18aaf 331 PANTHER PTHR30217 1 218 4.3E-208 T 14-09-2016 PAJ_RS19950 df744e5e834b377328909cfa48c18aaf 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 14-09-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS19950 df744e5e834b377328909cfa48c18aaf 331 PANTHER PTHR30217:SF3 240 330 4.3E-208 T 14-09-2016 PAJ_RS19950 df744e5e834b377328909cfa48c18aaf 331 PANTHER PTHR30217:SF3 1 218 4.3E-208 T 14-09-2016 PAJ_RS19950 df744e5e834b377328909cfa48c18aaf 331 Pfam PF01136 Peptidase family U32 74 330 1.9E-66 T 14-09-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 PANTHER PTHR11815 1 388 7.5E-233 T 14-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 42.747 T 14-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 Gene3D G3DSA:3.40.50.261 240 383 1.2E-63 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 SUPERFAMILY SSF52210 239 385 3.01E-51 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 SUPERFAMILY SSF56059 1 238 2.3E-81 T 14-09-2016 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 Gene3D G3DSA:3.30.1490.20 22 95 1.5E-35 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 1.8E-180 T 14-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 Gene3D G3DSA:3.30.470.20 96 239 6.7E-56 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 Pfam PF08442 ATP-grasp domain 2 203 1.7E-82 T 14-09-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 Pfam PF00549 CoA-ligase 262 381 2.5E-23 T 14-09-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 PIRSF PIRSF001554 1 388 3.7E-154 T 14-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 PAJ_RS02740 186eddbf52004b69fa347203361a8b26 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 14-09-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS07905 5ba76a451742321544304ab2d79f6915 183 PANTHER PTHR23026 1 168 2.8E-87 T 14-09-2016 PAJ_RS07905 5ba76a451742321544304ab2d79f6915 183 Gene3D G3DSA:3.40.109.10 1 168 1.9E-42 T 14-09-2016 IPR000415 Nitroreductase-like GO:0016491 PAJ_RS07905 5ba76a451742321544304ab2d79f6915 183 PIRSF PIRSF000232 1 182 4.0E-67 T 14-09-2016 IPR026021 Putative NAD(P)H nitroreductase YdjA-like KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- PAJ_RS07905 5ba76a451742321544304ab2d79f6915 183 PANTHER PTHR23026:SF107 1 168 2.8E-87 T 14-09-2016 PAJ_RS07905 5ba76a451742321544304ab2d79f6915 183 Pfam PF00881 Nitroreductase family 9 161 1.2E-22 T 14-09-2016 IPR029479 Nitroreductase PAJ_RS07905 5ba76a451742321544304ab2d79f6915 183 SUPERFAMILY SSF55469 1 176 2.49E-41 T 14-09-2016 IPR000415 Nitroreductase-like GO:0016491 PAJ_RS18950 4180487dff4548b28482b93fa416a6a7 327 PANTHER PTHR11695 16 327 3.5E-127 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS18950 4180487dff4548b28482b93fa416a6a7 327 SMART SM00829 11 325 5.0E-30 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS18950 4180487dff4548b28482b93fa416a6a7 327 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 14-09-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 PAJ_RS18950 4180487dff4548b28482b93fa416a6a7 327 SUPERFAMILY SSF51735 113 275 3.32E-48 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18950 4180487dff4548b28482b93fa416a6a7 327 Gene3D G3DSA:3.40.50.720 146 256 1.7E-30 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18950 4180487dff4548b28482b93fa416a6a7 327 PANTHER PTHR11695:SF605 16 327 3.5E-127 T 14-09-2016 PAJ_RS18950 4180487dff4548b28482b93fa416a6a7 327 Pfam PF00107 Zinc-binding dehydrogenase 152 259 1.3E-28 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS18950 4180487dff4548b28482b93fa416a6a7 327 SUPERFAMILY SSF50129 9 142 5.66E-34 T 14-09-2016 IPR011032 GroES-like PAJ_RS18950 4180487dff4548b28482b93fa416a6a7 327 Gene3D G3DSA:3.90.180.10 3 145 7.4E-42 T 14-09-2016 IPR011032 GroES-like PAJ_RS18950 4180487dff4548b28482b93fa416a6a7 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 4.8E-8 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS03925 0ad3263bf2cb88dae130524aeea0ec13 199 PANTHER PTHR30546 1 199 4.1E-124 T 14-09-2016 PAJ_RS03925 0ad3263bf2cb88dae130524aeea0ec13 199 PANTHER PTHR30546:SF10 1 199 4.1E-124 T 14-09-2016 PAJ_RS03925 0ad3263bf2cb88dae130524aeea0ec13 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 197 2.2E-92 T 14-09-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 PAJ_RS03925 0ad3263bf2cb88dae130524aeea0ec13 199 Gene3D G3DSA:3.40.50.360 1 198 8.8E-74 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS03925 0ad3263bf2cb88dae130524aeea0ec13 199 Pfam PF03358 NADPH-dependent FMN reductase 5 142 1.0E-13 T 14-09-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 PAJ_RS03925 0ad3263bf2cb88dae130524aeea0ec13 199 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 199 38.642 T 14-09-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 PAJ_RS03925 0ad3263bf2cb88dae130524aeea0ec13 199 SUPERFAMILY SSF52218 1 198 1.05E-59 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS03915 723115fe2b2c55532bcce91e54a19cf1 460 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 257 268 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS03915 723115fe2b2c55532bcce91e54a19cf1 460 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 229 236 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS03915 723115fe2b2c55532bcce91e54a19cf1 460 Gene3D G3DSA:3.40.605.10 4 242 1.3E-65 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS03915 723115fe2b2c55532bcce91e54a19cf1 460 PANTHER PTHR11699 1 455 1.7E-260 T 14-09-2016 PAJ_RS03915 723115fe2b2c55532bcce91e54a19cf1 460 Pfam PF00171 Aldehyde dehydrogenase family 4 453 8.8E-133 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS03915 723115fe2b2c55532bcce91e54a19cf1 460 PANTHER PTHR11699:SF205 1 455 1.7E-260 T 14-09-2016 PAJ_RS03915 723115fe2b2c55532bcce91e54a19cf1 460 SUPERFAMILY SSF53720 4 455 2.75E-138 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS03915 723115fe2b2c55532bcce91e54a19cf1 460 Gene3D G3DSA:3.40.309.10 243 428 2.6E-62 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 Gene3D G3DSA:3.40.50.720 311 496 1.2E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 SUPERFAMILY SSF51735 313 494 1.38E-56 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 713 0.0 T 14-09-2016 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 Gene3D G3DSA:1.10.1040.10 497 591 6.2E-21 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 14-09-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 SUPERFAMILY SSF52096 6 304 3.02E-70 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 SUPERFAMILY SSF48179 622 713 6.29E-23 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 PANTHER PTHR23309 8 719 0.0 T 14-09-2016 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 212 2.3E-38 T 14-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 495 591 1.3E-25 T 14-09-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 626 684 3.4E-5 T 14-09-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 PANTHER PTHR23309:SF18 8 719 0.0 T 14-09-2016 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 492 516 - T 14-09-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 315 493 2.9E-61 T 14-09-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 Gene3D G3DSA:3.90.226.10 11 201 6.1E-62 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 Gene3D G3DSA:3.90.226.10 234 295 6.1E-62 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 Gene3D G3DSA:1.10.1040.10 632 708 1.2E-15 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS18570 800d29a65c25a2c4c4bca72ea8a059c8 727 SUPERFAMILY SSF48179 494 608 2.98E-29 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS05975 5277617fa161d179d6a72fdfdfcda03c 200 PANTHER PTHR30055 1 195 3.0E-68 T 14-09-2016 PAJ_RS05975 5277617fa161d179d6a72fdfdfcda03c 200 SUPERFAMILY SSF46689 6 77 3.18E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS05975 5277617fa161d179d6a72fdfdfcda03c 200 PANTHER PTHR30055:SF20 1 195 3.0E-68 T 14-09-2016 PAJ_RS05975 5277617fa161d179d6a72fdfdfcda03c 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 55 1.0E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS05975 5277617fa161d179d6a72fdfdfcda03c 200 Gene3D G3DSA:1.10.357.10 9 195 1.4E-35 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS05975 5277617fa161d179d6a72fdfdfcda03c 200 Pfam PF16925 Bacterial transcriptional repressor C-terminal 85 187 1.3E-12 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS05975 5277617fa161d179d6a72fdfdfcda03c 200 SUPERFAMILY SSF48498 82 195 6.47E-19 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS12435 821a0ec8f83450a2403aa27c6da876ee 261 Gene3D G3DSA:1.10.10.10 27 107 6.4E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12435 821a0ec8f83450a2403aa27c6da876ee 261 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 105 3.2E-13 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS12435 821a0ec8f83450a2403aa27c6da876ee 261 SMART SM00862 28 105 1.1E-11 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS12435 821a0ec8f83450a2403aa27c6da876ee 261 SUPERFAMILY SSF46894 22 105 2.04E-14 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS07520 090805de5bf0da3bc1cfe610ae22b945 331 PANTHER PTHR24220 5 329 6.8E-213 T 14-09-2016 PAJ_RS07520 090805de5bf0da3bc1cfe610ae22b945 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 306 6.4E-17 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS07520 090805de5bf0da3bc1cfe610ae22b945 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 238 324 8.5E-21 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS07520 090805de5bf0da3bc1cfe610ae22b945 331 Pfam PF00005 ABC transporter 24 188 2.3E-27 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS07520 090805de5bf0da3bc1cfe610ae22b945 331 Gene3D G3DSA:3.40.50.300 2 261 1.2E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07520 090805de5bf0da3bc1cfe610ae22b945 331 SUPERFAMILY SSF52540 129 266 3.09E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07520 090805de5bf0da3bc1cfe610ae22b945 331 SUPERFAMILY SSF52540 3 102 3.09E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07520 090805de5bf0da3bc1cfe610ae22b945 331 PANTHER PTHR24220:SF514 5 329 6.8E-213 T 14-09-2016 PAJ_RS07520 090805de5bf0da3bc1cfe610ae22b945 331 SMART SM00382 32 244 4.1E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16830 c7068113458f0e893382c7b47d855c65 323 Gene3D G3DSA:3.40.190.10 12 140 1.0E-15 T 14-09-2016 PAJ_RS16830 c7068113458f0e893382c7b47d855c65 323 PANTHER PTHR30085 6 292 1.1E-51 T 14-09-2016 PAJ_RS16830 c7068113458f0e893382c7b47d855c65 323 Gene3D G3DSA:3.40.190.10 141 237 3.3E-5 T 14-09-2016 PAJ_RS16830 c7068113458f0e893382c7b47d855c65 323 PANTHER PTHR30085:SF5 6 292 1.1E-51 T 14-09-2016 PAJ_RS16830 c7068113458f0e893382c7b47d855c65 323 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 16 234 3.7E-23 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS16830 c7068113458f0e893382c7b47d855c65 323 SMART SM00062 15 248 7.2E-23 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS16830 c7068113458f0e893382c7b47d855c65 323 SUPERFAMILY SSF53850 8 238 1.56E-29 T 14-09-2016 PAJ_RS16830 c7068113458f0e893382c7b47d855c65 323 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 39 52 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS15495 04e1d7eda2818dba4dd06493c266268d 484 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 8.5E-201 T 14-09-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 UniPathway: UPA00733 PAJ_RS15495 04e1d7eda2818dba4dd06493c266268d 484 Gene3D G3DSA:3.40.605.10 12 268 4.8E-102 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS15495 04e1d7eda2818dba4dd06493c266268d 484 Gene3D G3DSA:3.40.309.10 269 458 3.0E-67 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS15495 04e1d7eda2818dba4dd06493c266268d 484 PANTHER PTHR11699 1 476 3.0E-267 T 14-09-2016 PAJ_RS15495 04e1d7eda2818dba4dd06493c266268d 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS15495 04e1d7eda2818dba4dd06493c266268d 484 Pfam PF00171 Aldehyde dehydrogenase family 23 477 3.3E-168 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS15495 04e1d7eda2818dba4dd06493c266268d 484 PANTHER PTHR11699:SF49 1 476 3.0E-267 T 14-09-2016 PAJ_RS15495 04e1d7eda2818dba4dd06493c266268d 484 SUPERFAMILY SSF53720 6 481 9.29E-166 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS00115 d23a95a956f331553bea7365d113f6eb 352 PANTHER PTHR32487 9 352 2.5E-86 T 14-09-2016 PAJ_RS00115 d23a95a956f331553bea7365d113f6eb 352 Gene3D G3DSA:3.40.50.720 9 261 1.4E-17 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00115 d23a95a956f331553bea7365d113f6eb 352 SUPERFAMILY SSF51735 4 273 4.82E-26 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00115 d23a95a956f331553bea7365d113f6eb 352 SUPERFAMILY SSF51735 308 325 4.82E-26 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS00115 d23a95a956f331553bea7365d113f6eb 352 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 103 8.0E-10 T 14-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PAJ_RS19915 47a593fa3c44fe1e68c95c1fc65821e2 314 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 219 9.2E-91 T 14-09-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS19915 47a593fa3c44fe1e68c95c1fc65821e2 314 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 247 3.3E-23 T 14-09-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal PAJ_RS19915 47a593fa3c44fe1e68c95c1fc65821e2 314 SUPERFAMILY SSF55120 11 246 3.74E-83 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS19915 47a593fa3c44fe1e68c95c1fc65821e2 314 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 309 19.219 T 14-09-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS19915 47a593fa3c44fe1e68c95c1fc65821e2 314 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 252 309 6.4E-22 T 14-09-2016 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS19915 47a593fa3c44fe1e68c95c1fc65821e2 314 Gene3D G3DSA:2.30.130.10 250 313 1.3E-29 T 14-09-2016 IPR015947 PUA-like domain PAJ_RS19915 47a593fa3c44fe1e68c95c1fc65821e2 314 SUPERFAMILY SSF88697 251 310 1.14E-14 T 14-09-2016 IPR015947 PUA-like domain PAJ_RS19915 47a593fa3c44fe1e68c95c1fc65821e2 314 PANTHER PTHR13767 2 309 9.7E-139 T 14-09-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS19915 47a593fa3c44fe1e68c95c1fc65821e2 314 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 3.5E-58 T 14-09-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 PAJ_RS19915 47a593fa3c44fe1e68c95c1fc65821e2 314 PANTHER PTHR13767:SF2 2 309 9.7E-139 T 14-09-2016 PAJ_RS18240 25478be1f528abe03ad5e3fb0de6cbbb 257 SMART SM00052 14 248 5.4E-16 T 14-09-2016 IPR001633 EAL domain PAJ_RS18240 25478be1f528abe03ad5e3fb0de6cbbb 257 PANTHER PTHR33121:SF6 1 245 4.8E-99 T 14-09-2016 PAJ_RS18240 25478be1f528abe03ad5e3fb0de6cbbb 257 Pfam PF00563 EAL domain 27 243 8.1E-28 T 14-09-2016 IPR001633 EAL domain PAJ_RS18240 25478be1f528abe03ad5e3fb0de6cbbb 257 PANTHER PTHR33121 1 245 4.8E-99 T 14-09-2016 PAJ_RS18240 25478be1f528abe03ad5e3fb0de6cbbb 257 SUPERFAMILY SSF141868 25 253 1.83E-33 T 14-09-2016 IPR001633 EAL domain PAJ_RS18240 25478be1f528abe03ad5e3fb0de6cbbb 257 Gene3D G3DSA:3.20.20.450 32 251 1.6E-27 T 14-09-2016 IPR001633 EAL domain PAJ_RS05195 56c7c62868402073c32caee1df5ac63a 169 PANTHER PTHR23091:SF187 1 169 5.4E-81 T 14-09-2016 PAJ_RS05195 56c7c62868402073c32caee1df5ac63a 169 Pfam PF13420 Acetyltransferase (GNAT) domain 3 155 1.2E-22 T 14-09-2016 PAJ_RS05195 56c7c62868402073c32caee1df5ac63a 169 SUPERFAMILY SSF55729 2 164 9.97E-33 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05195 56c7c62868402073c32caee1df5ac63a 169 PANTHER PTHR23091 1 169 5.4E-81 T 14-09-2016 PAJ_RS05195 56c7c62868402073c32caee1df5ac63a 169 Gene3D G3DSA:3.40.630.30 1 165 1.0E-39 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS01765 2f2346981529c15b850df91bf69d0cd7 589 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS01765 2f2346981529c15b850df91bf69d0cd7 589 SUPERFAMILY SSF90123 7 322 5.49E-72 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS01765 2f2346981529c15b850df91bf69d0cd7 589 SMART SM00382 361 547 1.5E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01765 2f2346981529c15b850df91bf69d0cd7 589 Pfam PF00005 ABC transporter 352 500 3.2E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS01765 2f2346981529c15b850df91bf69d0cd7 589 Gene3D G3DSA:3.40.50.300 336 564 1.5E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01765 2f2346981529c15b850df91bf69d0cd7 589 PANTHER PTHR24221 2 580 4.0E-189 T 14-09-2016 PAJ_RS01765 2f2346981529c15b850df91bf69d0cd7 589 SUPERFAMILY SSF52540 327 572 6.74E-78 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01765 2f2346981529c15b850df91bf69d0cd7 589 Gene3D G3DSA:1.20.1560.10 7 322 3.5E-70 T 14-09-2016 PAJ_RS01765 2f2346981529c15b850df91bf69d0cd7 589 Pfam PF00664 ABC transporter transmembrane region 22 291 8.8E-38 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 Gene3D G3DSA:1.10.10.60 12 54 2.0E-17 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 Gene3D G3DSA:1.10.10.60 55 76 1.8E-5 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 9.8E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 9.8E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 SUPERFAMILY SSF46689 10 90 3.69E-19 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 Pfam PF08362 YcdC-like protein, C-terminal region 69 210 1.9E-57 T 14-09-2016 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 PANTHER PTHR30055:SF53 1 173 4.0E-58 T 14-09-2016 PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 Gene3D G3DSA:1.10.357.10 77 211 2.8E-58 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 2.0E-13 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 SUPERFAMILY SSF48498 86 210 1.0E-40 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS03935 77c4c3926dae5117f22de6fbdf19af00 211 PANTHER PTHR30055 1 173 4.0E-58 T 14-09-2016 PAJ_RS13560 8ada4d89d97118681a1509df5d5e9c20 359 Pfam PF11873 Domain of unknown function (DUF3393) 5 191 6.2E-74 T 14-09-2016 IPR024570 Murein transglycosylase-C, N-terminal PAJ_RS13560 8ada4d89d97118681a1509df5d5e9c20 359 Gene3D G3DSA:1.10.530.10 187 358 6.8E-41 T 14-09-2016 PAJ_RS13560 8ada4d89d97118681a1509df5d5e9c20 359 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 213 241 - T 14-09-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 PAJ_RS13560 8ada4d89d97118681a1509df5d5e9c20 359 PANTHER PTHR21666 175 359 2.1E-51 T 14-09-2016 PAJ_RS13560 8ada4d89d97118681a1509df5d5e9c20 359 Pfam PF01464 Transglycosylase SLT domain 195 317 3.0E-32 T 14-09-2016 IPR008258 Transglycosylase SLT domain 1 PAJ_RS13560 8ada4d89d97118681a1509df5d5e9c20 359 SUPERFAMILY SSF53955 158 356 2.03E-36 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS03835 e2f85dd42f17c35509b245c6bad8835e 163 SUPERFAMILY SSF52540 26 140 1.96E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03835 e2f85dd42f17c35509b245c6bad8835e 163 PANTHER PTHR35369 12 163 4.0E-33 T 14-09-2016 PAJ_RS03835 e2f85dd42f17c35509b245c6bad8835e 163 Hamap MF_01179 Cell division inhibitor SulA [sulA]. 1 163 29.271 T 14-09-2016 IPR004596 Cell division suppressor protein, SulA GO:0009276|GO:0009432|GO:0051782 PAJ_RS03835 e2f85dd42f17c35509b245c6bad8835e 163 Pfam PF03846 Cell division inhibitor SulA 4 114 1.0E-47 T 14-09-2016 IPR004596 Cell division suppressor protein, SulA GO:0009276|GO:0009432|GO:0051782 PAJ_RS03835 e2f85dd42f17c35509b245c6bad8835e 163 PIRSF PIRSF003093 1 163 2.8E-52 T 14-09-2016 IPR004596 Cell division suppressor protein, SulA GO:0009276|GO:0009432|GO:0051782 PAJ_RS03835 e2f85dd42f17c35509b245c6bad8835e 163 Gene3D G3DSA:3.40.50.300 26 140 2.5E-35 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 SUPERFAMILY SSF47384 211 292 1.12E-14 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 291 1.5E-11 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 SMART SM00388 228 293 8.7E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 Gene3D G3DSA:1.10.287.130 220 279 1.8E-11 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 SMART SM00387 338 446 9.5E-14 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 PANTHER PTHR24423 118 132 1.1E-52 T 14-09-2016 PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 PANTHER PTHR24423 169 417 1.1E-52 T 14-09-2016 PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 PANTHER PTHR24423:SF474 118 132 1.1E-52 T 14-09-2016 PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 Pfam PF00672 HAMP domain 159 224 2.3E-6 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 Gene3D G3DSA:3.30.565.10 280 418 6.0E-25 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 PANTHER PTHR24423:SF474 169 417 1.1E-52 T 14-09-2016 PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 SUPERFAMILY SSF55874 283 418 4.32E-27 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS19175 95bb795987bce733e9760275b3d008f4 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 418 3.4E-12 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 SMART SM00481 7 74 5.4E-26 T 14-09-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 Pfam PF02811 PHP domain 8 172 1.2E-40 T 14-09-2016 IPR004013 PHP domain GO:0003824 PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1031 0.0 T 14-09-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 Pfam PF14579 Helix-hairpin-helix motif 808 897 8.5E-25 T 14-09-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 SUPERFAMILY SSF89550 6 263 2.55E-13 T 14-09-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 Gene3D G3DSA:3.20.20.140 6 257 2.5E-18 T 14-09-2016 PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 PANTHER PTHR32294:SF0 2 1160 0.0 T 14-09-2016 PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 PANTHER PTHR32294 2 1160 0.0 T 14-09-2016 PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 Gene3D G3DSA:1.10.150.280 836 882 2.3E-5 T 14-09-2016 PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 292 733 1.3E-177 T 14-09-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 Gene3D G3DSA:2.40.50.140 985 1078 9.1E-10 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS00765 45b9d9260f05cc530a6ef3d4e43836db 1160 Pfam PF01336 OB-fold nucleic acid binding domain 1000 1072 2.2E-8 T 14-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 PAJ_RS10165 0fcc9cbb3a539221c2cbb87908141d9f 386 PANTHER PTHR30590:SF2 2 378 1.8E-123 T 14-09-2016 PAJ_RS10165 0fcc9cbb3a539221c2cbb87908141d9f 386 Pfam PF04235 Protein of unknown function (DUF418) 215 373 8.3E-42 T 14-09-2016 IPR007349 Domain of unknown function DUF418 PAJ_RS10165 0fcc9cbb3a539221c2cbb87908141d9f 386 PANTHER PTHR30590 2 378 1.8E-123 T 14-09-2016 PAJ_RS06440 d24048d5d1cfa816d48e0b8929d7b9eb 331 SUPERFAMILY SSF51556 5 325 3.57E-73 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS06440 d24048d5d1cfa816d48e0b8929d7b9eb 331 Gene3D G3DSA:3.20.20.140 5 330 4.6E-97 T 14-09-2016 PAJ_RS06440 d24048d5d1cfa816d48e0b8929d7b9eb 331 Pfam PF00962 Adenosine/AMP deaminase 6 327 6.9E-88 T 14-09-2016 IPR001365 Adenosine/AMP deaminase domain GO:0019239 PAJ_RS06440 d24048d5d1cfa816d48e0b8929d7b9eb 331 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 330 3.5E-104 T 14-09-2016 IPR006330 Adenosine/adenine deaminase GO:0019239 PAJ_RS06440 d24048d5d1cfa816d48e0b8929d7b9eb 331 PANTHER PTHR11409 5 331 3.3E-101 T 14-09-2016 PAJ_RS06440 d24048d5d1cfa816d48e0b8929d7b9eb 331 Hamap MF_00540 Adenosine deaminase [add]. 1 331 50.891 T 14-09-2016 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 161 4.4E-50 T 14-09-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 Gene3D G3DSA:3.40.50.720 1 162 7.4E-60 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 2 292 3.8E-142 T 14-09-2016 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 PANTHER PTHR22981:SF78 1 294 3.0E-209 T 14-09-2016 PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 PANTHER PTHR22981 1 294 3.0E-209 T 14-09-2016 PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 281 1.8E-38 T 14-09-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 SUPERFAMILY SSF48179 162 291 9.52E-37 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 SUPERFAMILY SSF51735 1 162 2.19E-49 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 14-09-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 PIRSF PIRSF000103 1 292 1.3E-89 T 14-09-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 Hamap MF_02032 2-hydroxy-3-oxopropionate reductase [garR]. 1 294 65.611 T 14-09-2016 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 PAJ_RS13010 27310ec0a60d8f9982098da059582849 294 Gene3D G3DSA:1.10.1040.10 164 292 1.6E-43 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS16645 fb8f3c36e738016d13f6c11eec2812a1 311 PANTHER PTHR23024:SF41 58 296 1.0E-27 T 14-09-2016 PAJ_RS16645 fb8f3c36e738016d13f6c11eec2812a1 311 Gene3D G3DSA:3.40.50.1820 66 296 2.5E-46 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS16645 fb8f3c36e738016d13f6c11eec2812a1 311 PANTHER PTHR23024 58 296 1.0E-27 T 14-09-2016 PAJ_RS16645 fb8f3c36e738016d13f6c11eec2812a1 311 SUPERFAMILY SSF53474 61 294 9.34E-25 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS02615 d380fdab292b969be39455081268b6f1 176 PANTHER PTHR19384:SF77 1 120 2.1E-111 T 14-09-2016 PAJ_RS02615 d380fdab292b969be39455081268b6f1 176 PIRSF PIRSF038996 1 172 1.2E-69 T 14-09-2016 IPR010086 Flavodoxin, long chain GO:0010181 PAJ_RS02615 d380fdab292b969be39455081268b6f1 176 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 14-09-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 PAJ_RS02615 d380fdab292b969be39455081268b6f1 176 Gene3D G3DSA:3.40.50.360 2 168 2.3E-63 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS02615 d380fdab292b969be39455081268b6f1 176 PANTHER PTHR19384 141 175 2.1E-111 T 14-09-2016 PAJ_RS02615 d380fdab292b969be39455081268b6f1 176 PANTHER PTHR19384 1 120 2.1E-111 T 14-09-2016 PAJ_RS02615 d380fdab292b969be39455081268b6f1 176 Pfam PF00258 Flavodoxin 6 160 1.5E-31 T 14-09-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 PAJ_RS02615 d380fdab292b969be39455081268b6f1 176 PANTHER PTHR19384:SF77 141 175 2.1E-111 T 14-09-2016 PAJ_RS02615 d380fdab292b969be39455081268b6f1 176 SUPERFAMILY SSF52218 4 171 3.79E-53 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS02615 d380fdab292b969be39455081268b6f1 176 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 8.8E-76 T 14-09-2016 IPR010086 Flavodoxin, long chain GO:0010181 PAJ_RS04945 72e7be98ac07f8d58124b54e08adad09 240 Gene3D G3DSA:3.40.50.880 27 207 2.6E-44 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS04945 72e7be98ac07f8d58124b54e08adad09 240 Pfam PF00117 Glutamine amidotransferase class-I 59 205 3.5E-20 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PAJ_RS04945 72e7be98ac07f8d58124b54e08adad09 240 PANTHER PTHR11922 56 194 1.4E-29 T 14-09-2016 PAJ_RS04945 72e7be98ac07f8d58124b54e08adad09 240 SUPERFAMILY SSF52317 32 202 9.47E-38 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS01755 f0fe262dd331bcea99d415c1d126f435 344 Gene3D G3DSA:3.40.50.1100 142 331 7.0E-36 T 14-09-2016 PAJ_RS01755 f0fe262dd331bcea99d415c1d126f435 344 SUPERFAMILY SSF53686 21 335 2.75E-68 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS01755 f0fe262dd331bcea99d415c1d126f435 344 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 32 314 1.5E-42 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS01755 f0fe262dd331bcea99d415c1d126f435 344 PANTHER PTHR10314:SF126 10 343 3.8E-191 T 14-09-2016 PAJ_RS01755 f0fe262dd331bcea99d415c1d126f435 344 Gene3D G3DSA:3.40.50.1100 47 141 1.0E-22 T 14-09-2016 PAJ_RS01755 f0fe262dd331bcea99d415c1d126f435 344 PANTHER PTHR10314 10 343 3.8E-191 T 14-09-2016 PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 2.7E-162 T 14-09-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 PANTHER PTHR11907 1 480 1.8E-259 T 14-09-2016 PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 Gene3D G3DSA:3.40.50.2020 280 446 1.3E-46 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 PANTHER PTHR11907:SF0 1 480 1.8E-259 T 14-09-2016 PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 468 45.087 T 14-09-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 Pfam PF00156 Phosphoribosyl transferase domain 285 394 4.4E-7 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 PIRSF PIRSF000485 1 483 3.2E-170 T 14-09-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 Gene3D G3DSA:3.60.20.10 2 260 1.3E-65 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 SUPERFAMILY SSF53271 252 485 2.36E-70 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 SUPERFAMILY SSF56235 2 259 3.35E-74 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS10775 d7f0288d18e083178c72485b7bc16edc 505 Pfam PF13522 Glutamine amidotransferase domain 64 209 3.4E-16 T 14-09-2016 PAJ_RS14000 cd9925a1b9a4cdd72d7fdffed9a607a5 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 53 63 1.5E-9 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PAJ_RS14000 cd9925a1b9a4cdd72d7fdffed9a607a5 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 64 75 1.5E-9 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PAJ_RS14000 cd9925a1b9a4cdd72d7fdffed9a607a5 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 92 104 1.5E-9 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PAJ_RS14000 cd9925a1b9a4cdd72d7fdffed9a607a5 139 Gene3D G3DSA:2.10.109.10 26 127 1.0E-36 T 14-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PAJ_RS14000 cd9925a1b9a4cdd72d7fdffed9a607a5 139 PANTHER PTHR33516 1 121 4.9E-39 T 14-09-2016 PAJ_RS14000 cd9925a1b9a4cdd72d7fdffed9a607a5 139 SUPERFAMILY SSF51306 20 122 3.84E-27 T 14-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PAJ_RS14000 cd9925a1b9a4cdd72d7fdffed9a607a5 139 Pfam PF00717 Peptidase S24-like 58 109 1.2E-11 T 14-09-2016 IPR019759 Peptidase S24/S26A/S26B PAJ_RS14000 cd9925a1b9a4cdd72d7fdffed9a607a5 139 PANTHER PTHR33516:SF1 1 121 4.9E-39 T 14-09-2016 PAJ_RS01560 953d420929ea0600f736fc62486f7b5d 110 PANTHER PTHR33909:SF1 1 108 1.2E-36 T 14-09-2016 PAJ_RS01560 953d420929ea0600f736fc62486f7b5d 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 1.4E-16 T 14-09-2016 IPR003849 Preprotein translocase YajC PAJ_RS01560 953d420929ea0600f736fc62486f7b5d 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 1.4E-16 T 14-09-2016 IPR003849 Preprotein translocase YajC PAJ_RS01560 953d420929ea0600f736fc62486f7b5d 110 Pfam PF02699 Preprotein translocase subunit 23 99 4.2E-26 T 14-09-2016 IPR003849 Preprotein translocase YajC PAJ_RS01560 953d420929ea0600f736fc62486f7b5d 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 102 1.5E-33 T 14-09-2016 IPR003849 Preprotein translocase YajC PAJ_RS01560 953d420929ea0600f736fc62486f7b5d 110 PANTHER PTHR33909 1 108 1.2E-36 T 14-09-2016 PAJ_RS01560 953d420929ea0600f736fc62486f7b5d 110 SMART SM01323 19 102 5.1E-37 T 14-09-2016 IPR003849 Preprotein translocase YajC PAJ_RS14815 b0833a895df8f3733a1fb2e65b14e80a 157 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 10 152 5.3E-40 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS14815 b0833a895df8f3733a1fb2e65b14e80a 157 Gene3D G3DSA:3.40.930.10 5 153 2.8E-47 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS14815 b0833a895df8f3733a1fb2e65b14e80a 157 PANTHER PTHR30505 5 151 2.5E-35 T 14-09-2016 PAJ_RS14815 b0833a895df8f3733a1fb2e65b14e80a 157 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 10 138 5.0E-37 T 14-09-2016 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS14815 b0833a895df8f3733a1fb2e65b14e80a 157 SUPERFAMILY SSF55804 7 153 8.76E-39 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 SUPERFAMILY SSF81767 227 368 1.22E-43 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 Pfam PF01043 SecA preprotein cross-linking domain 232 358 2.4E-38 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 Pfam PF02810 SEC-C motif 881 899 9.9E-11 T 14-09-2016 IPR004027 SEC-C motif PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 Gene3D G3DSA:1.10.3060.10 648 831 3.8E-60 T 14-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 ProSitePatterns PS01312 SecA family signature. 500 515 - T 14-09-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 SUPERFAMILY SSF52540 368 415 7.52E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 SUPERFAMILY SSF52540 4 228 7.52E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 19.938 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 SUPERFAMILY SSF52540 416 618 5.76E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 SUPERFAMILY SSF81886 620 840 1.23E-85 T 14-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 SUPERFAMILY SSF81886 877 889 1.23E-85 T 14-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 SMART SM00957 6 402 0.0 T 14-09-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 Gene3D G3DSA:3.90.1440.10 230 368 1.6E-45 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 Gene3D G3DSA:3.40.50.300 2 228 3.3E-124 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 Gene3D G3DSA:3.40.50.300 369 416 3.3E-124 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 Gene3D G3DSA:3.40.50.300 417 619 9.0E-90 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 Pfam PF07517 SecA DEAD-like domain 7 402 2.5E-131 T 14-09-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 PRINTS PR00906 SecA protein signature 170 190 1.8E-73 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 PRINTS PR00906 SecA protein signature 63 87 1.8E-73 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 PRINTS PR00906 SecA protein signature 376 393 1.8E-73 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 PRINTS PR00906 SecA protein signature 101 115 1.8E-73 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 PRINTS PR00906 SecA protein signature 339 361 1.8E-73 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 PRINTS PR00906 SecA protein signature 117 127 1.8E-73 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 PRINTS PR00906 SecA protein signature 413 426 1.8E-73 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 Pfam PF07516 SecA Wing and Scaffold domain 617 830 1.3E-69 T 14-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 SMART SM00958 228 358 7.3E-82 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 PANTHER PTHR30612 550 901 0.0 T 14-09-2016 PAJ_RS00365 53c2906c55c868be3f12f027f9144e2b 901 PANTHER PTHR30612 1 520 0.0 T 14-09-2016 PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 Pfam PF00563 EAL domain 406 632 1.5E-37 T 14-09-2016 IPR001633 EAL domain PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 PANTHER PTHR33121:SF16 70 84 1.3E-18 T 14-09-2016 PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 PANTHER PTHR33121:SF16 354 631 1.3E-18 T 14-09-2016 PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 PANTHER PTHR33121 70 84 1.3E-18 T 14-09-2016 PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 33 130 1.0E-24 T 14-09-2016 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 SMART SM00267 216 388 1.4E-14 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 Pfam PF00990 Diguanylate cyclase, GGDEF domain 227 383 2.1E-21 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 SUPERFAMILY SSF141868 406 645 3.01E-37 T 14-09-2016 IPR001633 EAL domain PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 PANTHER PTHR33121 354 631 1.3E-18 T 14-09-2016 PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 Gene3D G3DSA:3.20.20.450 401 640 8.4E-34 T 14-09-2016 IPR001633 EAL domain PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 Gene3D G3DSA:3.30.70.270 230 386 8.1E-18 T 14-09-2016 PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 SMART SM00052 398 638 1.2E-30 T 14-09-2016 IPR001633 EAL domain PAJ_RS15555 0c3d46850bee816a0bdf092b19434361 649 SUPERFAMILY SSF55073 233 385 1.33E-18 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS01345 6829f8d983b9dee22352f15fa673487d 387 PANTHER PTHR23523 6 387 1.6E-115 T 14-09-2016 PAJ_RS01345 6829f8d983b9dee22352f15fa673487d 387 SUPERFAMILY SSF103473 6 384 2.09E-44 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS01345 6829f8d983b9dee22352f15fa673487d 387 Pfam PF07690 Major Facilitator Superfamily 13 337 6.6E-23 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS01345 6829f8d983b9dee22352f15fa673487d 387 PANTHER PTHR23523:SF1 6 387 1.6E-115 T 14-09-2016 PAJ_RS01345 6829f8d983b9dee22352f15fa673487d 387 Gene3D G3DSA:1.20.1250.20 198 381 3.9E-13 T 14-09-2016 PAJ_RS01345 6829f8d983b9dee22352f15fa673487d 387 Gene3D G3DSA:1.20.1250.20 9 188 5.4E-14 T 14-09-2016 PAJ_RS16000 100f9d2a914c85b5e6023e5a34034b69 134 PANTHER PTHR34352 1 134 1.5E-56 T 14-09-2016 PAJ_RS16000 100f9d2a914c85b5e6023e5a34034b69 134 Gene3D G3DSA:2.20.25.10 1 34 2.0E-19 T 14-09-2016 PAJ_RS16000 100f9d2a914c85b5e6023e5a34034b69 134 SUPERFAMILY SSF82784 1 132 3.01E-43 T 14-09-2016 IPR003718 OsmC/Ohr family PAJ_RS16000 100f9d2a914c85b5e6023e5a34034b69 134 Gene3D G3DSA:3.30.300.20 35 132 3.5E-43 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta PAJ_RS16000 100f9d2a914c85b5e6023e5a34034b69 134 Pfam PF02566 OsmC-like protein 30 127 1.7E-19 T 14-09-2016 IPR003718 OsmC/Ohr family PAJ_RS07730 b0313f96f6c98fd157d36b1c38acc938 210 PANTHER PTHR36920 1 210 2.3E-82 T 14-09-2016 PAJ_RS07730 b0313f96f6c98fd157d36b1c38acc938 210 SUPERFAMILY SSF56925 22 210 2.38E-27 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS07730 b0313f96f6c98fd157d36b1c38acc938 210 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 202 210 - T 14-09-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PAJ_RS07730 b0313f96f6c98fd157d36b1c38acc938 210 Gene3D G3DSA:2.40.160.20 21 210 2.4E-72 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS07730 b0313f96f6c98fd157d36b1c38acc938 210 Pfam PF03922 OmpW family 22 210 3.9E-66 T 14-09-2016 IPR005618 Outer membrane protein, OmpW GO:0019867 PAJ_RS07730 b0313f96f6c98fd157d36b1c38acc938 210 PANTHER PTHR36920:SF1 1 210 2.3E-82 T 14-09-2016 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 PANTHER PTHR11986:SF71 1 405 4.9E-281 T 14-09-2016 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 5 400 4.0E-217 T 14-09-2016 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 Gene3D G3DSA:3.90.1150.10 304 398 1.2E-32 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 Gene3D G3DSA:3.90.1150.10 8 57 1.2E-32 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 Pfam PF00202 Aminotransferase class-III 21 396 1.5E-120 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 Gene3D G3DSA:3.40.640.10 58 301 1.5E-90 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 PANTHER PTHR11986 1 405 4.9E-281 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 11 398 44.545 T 14-09-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 220 257 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 13 398 5.1E-159 T 14-09-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 PAJ_RS05660 f0461f13fe1f8374e85d8b379c24e454 406 SUPERFAMILY SSF53383 12 398 2.13E-124 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS07615 61da7321a5671dd3bbd6762c02f14cbb 254 PANTHER PTHR14969 1 123 2.1E-84 T 14-09-2016 PAJ_RS07615 61da7321a5671dd3bbd6762c02f14cbb 254 PANTHER PTHR14969:SF22 1 123 2.1E-84 T 14-09-2016 PAJ_RS07615 61da7321a5671dd3bbd6762c02f14cbb 254 Pfam PF01569 PAP2 superfamily 80 232 1.8E-28 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS07615 61da7321a5671dd3bbd6762c02f14cbb 254 Gene3D G3DSA:1.20.144.10 156 232 2.8E-23 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS07615 61da7321a5671dd3bbd6762c02f14cbb 254 Gene3D G3DSA:1.20.144.10 56 120 2.8E-23 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS07615 61da7321a5671dd3bbd6762c02f14cbb 254 SUPERFAMILY SSF48317 145 233 1.44E-28 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS07615 61da7321a5671dd3bbd6762c02f14cbb 254 SUPERFAMILY SSF48317 15 113 1.44E-28 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS07615 61da7321a5671dd3bbd6762c02f14cbb 254 SMART SM00014 79 227 4.2E-33 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS07615 61da7321a5671dd3bbd6762c02f14cbb 254 PANTHER PTHR14969:SF22 157 251 2.1E-84 T 14-09-2016 PAJ_RS07615 61da7321a5671dd3bbd6762c02f14cbb 254 PANTHER PTHR14969 157 251 2.1E-84 T 14-09-2016 PAJ_RS15830 5aeae9e3ab06271f97647e6cf172c357 110 SUPERFAMILY SSF54843 1 109 6.28E-43 T 14-09-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15830 5aeae9e3ab06271f97647e6cf172c357 110 Gene3D G3DSA:3.90.470.10 1 109 2.4E-43 T 14-09-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15830 5aeae9e3ab06271f97647e6cf172c357 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 14-09-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15830 5aeae9e3ab06271f97647e6cf172c357 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 5.0E-51 T 14-09-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 PAJ_RS15830 5aeae9e3ab06271f97647e6cf172c357 110 Pfam PF00237 Ribosomal protein L22p/L17e 8 107 5.8E-34 T 14-09-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15830 5aeae9e3ab06271f97647e6cf172c357 110 PANTHER PTHR13501 1 109 4.4E-54 T 14-09-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 PAJ_RS15830 5aeae9e3ab06271f97647e6cf172c357 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.012 T 14-09-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 PAJ_RS15175 746b3b8081958e4643d5ea25eb76f61e 282 PANTHER PTHR10091:SF15 1 281 3.6E-122 T 14-09-2016 PAJ_RS15175 746b3b8081958e4643d5ea25eb76f61e 282 SUPERFAMILY SSF74650 9 274 1.07E-49 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS15175 746b3b8081958e4643d5ea25eb76f61e 282 PANTHER PTHR10091 1 281 3.6E-122 T 14-09-2016 PAJ_RS15175 746b3b8081958e4643d5ea25eb76f61e 282 Pfam PF01263 Aldose 1-epimerase 8 268 9.0E-40 T 14-09-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 PAJ_RS15175 746b3b8081958e4643d5ea25eb76f61e 282 Gene3D G3DSA:2.70.98.10 7 268 1.1E-29 T 14-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PAJ_RS00565 159df269ce5fb29c904161553f12df97 161 SUPERFAMILY SSF55083 1 158 4.58E-53 T 14-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PAJ_RS00565 159df269ce5fb29c904161553f12df97 161 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 3.4E-36 T 14-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PAJ_RS00565 159df269ce5fb29c904161553f12df97 161 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 3.8E-44 T 14-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PAJ_RS00565 159df269ce5fb29c904161553f12df97 161 Gene3D G3DSA:3.30.70.560 3 154 4.1E-56 T 14-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PAJ_RS00565 159df269ce5fb29c904161553f12df97 161 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 14-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PAJ_RS00565 159df269ce5fb29c904161553f12df97 161 PANTHER PTHR20941 1 157 5.0E-69 T 14-09-2016 PAJ_RS08920 d6d60ed4eeec07ef8cb3aa8738d151fe 132 PANTHER PTHR38766:SF1 11 131 4.6E-32 T 14-09-2016 PAJ_RS08920 d6d60ed4eeec07ef8cb3aa8738d151fe 132 PANTHER PTHR38766 11 131 4.6E-32 T 14-09-2016 PAJ_RS08920 d6d60ed4eeec07ef8cb3aa8738d151fe 132 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 31 99 1.7E-20 T 14-09-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 PAJ_RS08920 d6d60ed4eeec07ef8cb3aa8738d151fe 132 Pfam PF04347 Flagellar biosynthesis protein, FliO 43 125 2.2E-19 T 14-09-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 PAJ_RS14030 17f2ded74787f3b6676dd46cd2268e06 235 Gene3D G3DSA:3.40.50.1240 4 230 1.9E-79 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS14030 17f2ded74787f3b6676dd46cd2268e06 235 SUPERFAMILY SSF53254 4 230 9.56E-66 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS14030 17f2ded74787f3b6676dd46cd2268e06 235 SMART SM00855 5 190 4.9E-28 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PAJ_RS14030 17f2ded74787f3b6676dd46cd2268e06 235 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 229 39.609 T 14-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 PAJ_RS14030 17f2ded74787f3b6676dd46cd2268e06 235 PANTHER PTHR11931 2 218 1.4E-102 T 14-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 PAJ_RS14030 17f2ded74787f3b6676dd46cd2268e06 235 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 134 5.6E-28 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PAJ_RS14030 17f2ded74787f3b6676dd46cd2268e06 235 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 140 221 2.8E-7 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PAJ_RS14030 17f2ded74787f3b6676dd46cd2268e06 235 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 14-09-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 PAJ_RS14030 17f2ded74787f3b6676dd46cd2268e06 235 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 230 2.2E-88 T 14-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 PAJ_RS03245 ecb140880f4477f46e0a4d324513ad7c 499 PANTHER PTHR10362 14 494 2.2E-181 T 14-09-2016 PAJ_RS03245 ecb140880f4477f46e0a4d324513ad7c 499 Pfam PF00221 Aromatic amino acid lyase 14 468 3.4E-160 T 14-09-2016 IPR001106 Aromatic amino acid lyase PAJ_RS03245 ecb140880f4477f46e0a4d324513ad7c 499 Gene3D G3DSA:1.10.275.10 5 195 1.9E-55 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal PAJ_RS03245 ecb140880f4477f46e0a4d324513ad7c 499 SUPERFAMILY SSF48557 4 494 6.44E-160 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 PAJ_RS03245 ecb140880f4477f46e0a4d324513ad7c 499 Gene3D G3DSA:1.20.200.10 196 494 4.4E-108 T 14-09-2016 PAJ_RS03245 ecb140880f4477f46e0a4d324513ad7c 499 PANTHER PTHR10362:SF7 14 494 2.2E-181 T 14-09-2016 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 PANTHER PTHR32089:SF63 119 517 8.1E-130 T 14-09-2016 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 SMART SM00283 267 514 3.5E-78 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 513 1.6E-55 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 Pfam PF05227 CHASE3 domain 37 178 2.9E-33 T 14-09-2016 IPR007891 CHASE3 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 SUPERFAMILY SSF58104 247 515 2.22E-66 T 14-09-2016 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 PANTHER PTHR32089 119 517 8.1E-130 T 14-09-2016 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 1.3E-56 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 5 1.3E-56 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 1.3E-56 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 1.3E-56 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 1.3E-56 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS13690 885d5ffb354c4a039761a6b9feb42094 527 Gene3D G3DSA:1.10.287.950 282 486 2.4E-58 T 14-09-2016 PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 Pfam PF00270 DEAD/DEAH box helicase 82 233 1.3E-8 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 PANTHER PTHR18934 738 866 0.0 T 14-09-2016 PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 SMART SM00847 464 558 3.4E-36 T 14-09-2016 IPR007502 Helicase-associated domain GO:0004386 PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 SMART SM00490 305 404 1.6E-15 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 SUPERFAMILY SSF52540 74 597 5.53E-108 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 SMART SM00487 75 259 2.0E-30 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 PANTHER PTHR18934:SF109 15 701 0.0 T 14-09-2016 PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 Pfam PF00271 Helicase conserved C-terminal domain 286 403 1.9E-10 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 598 697 4.1E-15 T 14-09-2016 IPR011709 Domain of unknown function DUF1605 PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 PANTHER PTHR18934 15 701 0.0 T 14-09-2016 PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 Pfam PF11898 Domain of unknown function (DUF3418) 712 1296 7.4E-236 T 14-09-2016 IPR024590 RNA helicase HrpA, C-terminal PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 Pfam PF04408 Helicase associated domain (HA2) 466 555 5.3E-17 T 14-09-2016 IPR007502 Helicase-associated domain GO:0004386 PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 Gene3D G3DSA:3.40.50.300 272 416 1.6E-11 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 Gene3D G3DSA:3.40.50.300 77 233 1.1E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 14 1296 0.0 T 14-09-2016 IPR010222 RNA helicase HrpA GO:0004004 PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 PANTHER PTHR18934:SF109 738 866 0.0 T 14-09-2016 PAJ_RS07390 834ad65090e62bbaeccb37c9898cc719 1299 SMART SM00382 92 384 3.3E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17635 b866b2aa102e3d8dcb81892bad0ca312 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 4.4E-60 T 14-09-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 PAJ_RS17635 b866b2aa102e3d8dcb81892bad0ca312 156 Gene3D G3DSA:1.20.5.620 62 122 1.3E-25 T 14-09-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain PAJ_RS17635 b866b2aa102e3d8dcb81892bad0ca312 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 156 13.139 T 14-09-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 PAJ_RS17635 b866b2aa102e3d8dcb81892bad0ca312 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 9.4E-38 T 14-09-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 PAJ_RS17635 b866b2aa102e3d8dcb81892bad0ca312 156 SUPERFAMILY SSF81573 63 121 1.83E-15 T 14-09-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain PAJ_RS17635 b866b2aa102e3d8dcb81892bad0ca312 156 PANTHER PTHR33445 1 156 6.8E-48 T 14-09-2016 PAJ_RS07435 e23f9d284bae7a53d70b6a6b2a27dc45 327 SUPERFAMILY SSF143865 14 259 1.26E-49 T 14-09-2016 PAJ_RS07435 e23f9d284bae7a53d70b6a6b2a27dc45 327 Gene3D G3DSA:1.20.58.340 146 242 1.8E-13 T 14-09-2016 PAJ_RS07435 e23f9d284bae7a53d70b6a6b2a27dc45 327 Gene3D G3DSA:3.30.460.20 35 137 2.7E-4 T 14-09-2016 PAJ_RS07435 e23f9d284bae7a53d70b6a6b2a27dc45 327 PANTHER PTHR21535 42 327 2.1E-45 T 14-09-2016 PAJ_RS07435 e23f9d284bae7a53d70b6a6b2a27dc45 327 Pfam PF01544 CorA-like Mg2+ transporter protein 39 323 1.6E-63 T 14-09-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 PAJ_RS07435 e23f9d284bae7a53d70b6a6b2a27dc45 327 Gene3D G3DSA:1.20.58.340 253 327 1.2E-20 T 14-09-2016 PAJ_RS07435 e23f9d284bae7a53d70b6a6b2a27dc45 327 SUPERFAMILY SSF144083 263 324 1.57E-14 T 14-09-2016 PAJ_RS15950 f027504075d45bae34726788af70f14a 634 PANTHER PTHR19211:SF49 1 555 0.0 T 14-09-2016 PAJ_RS15950 f027504075d45bae34726788af70f14a 634 SMART SM00382 26 223 1.0E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS15950 f027504075d45bae34726788af70f14a 634 SMART SM00382 337 504 1.6E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS15950 f027504075d45bae34726788af70f14a 634 PANTHER PTHR19211 1 555 0.0 T 14-09-2016 PAJ_RS15950 f027504075d45bae34726788af70f14a 634 SUPERFAMILY SSF52540 295 510 1.01E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15950 f027504075d45bae34726788af70f14a 634 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS15950 f027504075d45bae34726788af70f14a 634 Gene3D G3DSA:3.40.50.300 4 275 2.2E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15950 f027504075d45bae34726788af70f14a 634 Pfam PF12848 ABC transporter 217 295 1.4E-27 T 14-09-2016 IPR032781 ABC-transporter extension domain PAJ_RS15950 f027504075d45bae34726788af70f14a 634 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS15950 f027504075d45bae34726788af70f14a 634 Pfam PF00005 ABC transporter 328 459 1.0E-24 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS15950 f027504075d45bae34726788af70f14a 634 Pfam PF00005 ABC transporter 17 178 2.2E-23 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS15950 f027504075d45bae34726788af70f14a 634 SUPERFAMILY SSF52540 4 92 3.92E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15950 f027504075d45bae34726788af70f14a 634 SUPERFAMILY SSF52540 119 249 3.92E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15950 f027504075d45bae34726788af70f14a 634 Gene3D G3DSA:3.40.50.300 310 535 5.1E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15965 fbd40fa0df85af63dc95b47500a1834a 255 SUPERFAMILY SSF52540 1 213 1.14E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15965 fbd40fa0df85af63dc95b47500a1834a 255 Gene3D G3DSA:3.40.50.300 1 214 5.9E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15965 fbd40fa0df85af63dc95b47500a1834a 255 Pfam PF00005 ABC transporter 17 156 4.9E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS15965 fbd40fa0df85af63dc95b47500a1834a 255 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS15965 fbd40fa0df85af63dc95b47500a1834a 255 PANTHER PTHR24220 3 205 1.6E-127 T 14-09-2016 PAJ_RS15965 fbd40fa0df85af63dc95b47500a1834a 255 PANTHER PTHR24220:SF564 3 205 1.6E-127 T 14-09-2016 PAJ_RS15965 fbd40fa0df85af63dc95b47500a1834a 255 SMART SM00382 26 205 4.6E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS04420 e33f78b4c49e7f6bb05721b8c6431a20 306 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 120 7.8E-30 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 PAJ_RS04420 e33f78b4c49e7f6bb05721b8c6431a20 306 Gene3D G3DSA:3.40.50.720 2 128 2.7E-38 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS04420 e33f78b4c49e7f6bb05721b8c6431a20 306 Gene3D G3DSA:3.30.360.10 129 305 2.5E-65 T 14-09-2016 PAJ_RS04420 e33f78b4c49e7f6bb05721b8c6431a20 306 SUPERFAMILY SSF55347 122 263 1.02E-40 T 14-09-2016 PAJ_RS04420 e33f78b4c49e7f6bb05721b8c6431a20 306 PANTHER PTHR22604:SF126 2 305 2.9E-124 T 14-09-2016 PAJ_RS04420 e33f78b4c49e7f6bb05721b8c6431a20 306 PANTHER PTHR22604 2 305 2.9E-124 T 14-09-2016 PAJ_RS04420 e33f78b4c49e7f6bb05721b8c6431a20 306 SUPERFAMILY SSF51735 2 137 6.01E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15530 fd765df8dd9f2f3172223df4b00fe266 489 Pfam PF00575 S1 RNA binding domain 38 109 2.4E-5 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS15530 fd765df8dd9f2f3172223df4b00fe266 489 Gene3D G3DSA:2.40.50.140 30 128 6.6E-33 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15530 fd765df8dd9f2f3172223df4b00fe266 489 Pfam PF10150 Ribonuclease E/G family 124 393 1.1E-99 T 14-09-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 PAJ_RS15530 fd765df8dd9f2f3172223df4b00fe266 489 SUPERFAMILY SSF50249 39 128 8.31E-19 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS15530 fd765df8dd9f2f3172223df4b00fe266 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 1.5E-171 T 14-09-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 PAJ_RS15530 fd765df8dd9f2f3172223df4b00fe266 489 SMART SM00316 37 122 1.4E-9 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS15530 fd765df8dd9f2f3172223df4b00fe266 489 PANTHER PTHR30001 1 489 3.1E-219 T 14-09-2016 PAJ_RS00970 37f603606671d28c1bd0e5e20aba8916 224 SUPERFAMILY SSF56235 1 224 8.49E-73 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS00970 37f603606671d28c1bd0e5e20aba8916 224 PANTHER PTHR39328 2 224 6.0E-58 T 14-09-2016 PAJ_RS00970 37f603606671d28c1bd0e5e20aba8916 224 PANTHER PTHR39328:SF1 2 224 6.0E-58 T 14-09-2016 PAJ_RS00970 37f603606671d28c1bd0e5e20aba8916 224 Gene3D G3DSA:3.60.20.10 1 215 6.3E-75 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS00970 37f603606671d28c1bd0e5e20aba8916 224 Pfam PF06267 Family of unknown function (DUF1028) 2 191 8.6E-63 T 14-09-2016 IPR010430 Protein of unknown function DUF1028 PAJ_RS06225 b61b5ab5f10c8156570c5f23e3e6b6a2 193 PANTHER PTHR30335:SF0 2 193 2.9E-126 T 14-09-2016 PAJ_RS06225 b61b5ab5f10c8156570c5f23e3e6b6a2 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 5.1E-59 T 14-09-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 PAJ_RS06225 b61b5ab5f10c8156570c5f23e3e6b6a2 193 PIRSF PIRSF006102 1 193 1.0E-57 T 14-09-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 PAJ_RS06225 b61b5ab5f10c8156570c5f23e3e6b6a2 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 1.6E-89 T 14-09-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 PAJ_RS06225 b61b5ab5f10c8156570c5f23e3e6b6a2 193 PANTHER PTHR30335 2 193 2.9E-126 T 14-09-2016 PAJ_RS06225 b61b5ab5f10c8156570c5f23e3e6b6a2 193 Hamap MF_00459 Electron transport complex subunit RsxA [rsxA]. 2 191 26.132 T 14-09-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 PAJ_RS13545 728d801289e489cd5bb7e0aea736bb52 470 Gene3D G3DSA:1.20.1250.20 229 430 1.4E-4 T 14-09-2016 PAJ_RS13545 728d801289e489cd5bb7e0aea736bb52 470 Gene3D G3DSA:1.20.1250.20 12 200 2.4E-13 T 14-09-2016 PAJ_RS13545 728d801289e489cd5bb7e0aea736bb52 470 PANTHER PTHR11328 1 470 0.0 T 14-09-2016 PAJ_RS13545 728d801289e489cd5bb7e0aea736bb52 470 PANTHER PTHR11328:SF36 1 470 0.0 T 14-09-2016 PAJ_RS13545 728d801289e489cd5bb7e0aea736bb52 470 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 8 450 4.8E-170 T 14-09-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 PAJ_RS13545 728d801289e489cd5bb7e0aea736bb52 470 Pfam PF13347 MFS/sugar transport protein 10 436 2.0E-86 T 14-09-2016 PAJ_RS13545 728d801289e489cd5bb7e0aea736bb52 470 SUPERFAMILY SSF103473 10 435 4.84E-30 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20075 66ced5113f6cb60d98b189af8641f85e 140 PIRSF PIRSF018193 1 140 3.4E-64 T 14-09-2016 IPR016716 Regulator of ribonuclease activity B PAJ_RS20075 66ced5113f6cb60d98b189af8641f85e 140 SUPERFAMILY SSF89946 2 124 6.41E-41 T 14-09-2016 IPR009671 Regulator of ribonuclease activity B domain PAJ_RS20075 66ced5113f6cb60d98b189af8641f85e 140 Gene3D G3DSA:3.30.70.970 1 125 2.2E-53 T 14-09-2016 IPR009671 Regulator of ribonuclease activity B domain PAJ_RS20075 66ced5113f6cb60d98b189af8641f85e 140 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 4 117 30.937 T 14-09-2016 IPR016716 Regulator of ribonuclease activity B PAJ_RS20075 66ced5113f6cb60d98b189af8641f85e 140 Pfam PF06877 Regulator of ribonuclease activity B 12 113 1.8E-32 T 14-09-2016 IPR009671 Regulator of ribonuclease activity B domain PAJ_RS01475 331d9668fdc385ac2cd30e5c9018d830 303 Pfam PF04381 Putative exonuclease, RdgC 2 300 2.9E-130 T 14-09-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 PAJ_RS01475 331d9668fdc385ac2cd30e5c9018d830 303 PANTHER PTHR38103 3 303 1.8E-163 T 14-09-2016 PAJ_RS01475 331d9668fdc385ac2cd30e5c9018d830 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 302 42.654 T 14-09-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 PAJ_RS01475 331d9668fdc385ac2cd30e5c9018d830 303 PANTHER PTHR38103:SF1 3 303 1.8E-163 T 14-09-2016 PAJ_RS15750 463c3aa2b04ee177c2932d1642bb3b83 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 8.0E-10 T 14-09-2016 PAJ_RS15750 463c3aa2b04ee177c2932d1642bb3b83 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 18.073 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15750 463c3aa2b04ee177c2932d1642bb3b83 38 Pfam PF00444 Ribosomal protein L36 1 38 6.3E-21 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15750 463c3aa2b04ee177c2932d1642bb3b83 38 SUPERFAMILY SSF57840 1 38 3.66E-17 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15750 463c3aa2b04ee177c2932d1642bb3b83 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 1.4E-22 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15750 463c3aa2b04ee177c2932d1642bb3b83 38 PANTHER PTHR18804 1 38 9.8E-20 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15750 463c3aa2b04ee177c2932d1642bb3b83 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS13855 9b3caa336b05e8987b4a8249ef0dc23b 939 SUPERFAMILY SSF52540 619 855 2.53E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13855 9b3caa336b05e8987b4a8249ef0dc23b 939 SUPERFAMILY SSF52540 458 580 2.53E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13855 9b3caa336b05e8987b4a8249ef0dc23b 939 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 50 314 6.6E-71 T 14-09-2016 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase PAJ_RS13855 9b3caa336b05e8987b4a8249ef0dc23b 939 Gene3D G3DSA:3.40.50.300 504 582 3.9E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13855 9b3caa336b05e8987b4a8249ef0dc23b 939 Gene3D G3DSA:3.40.50.300 731 837 3.9E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS13855 9b3caa336b05e8987b4a8249ef0dc23b 939 TIGRFAM TIGR03744 traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family 39 931 0.0 T 14-09-2016 IPR022303 Conjugative transfer ATPase PAJ_RS08065 63b44e9e604ad239665705d0cf5711e9 114 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 14-09-2016 IPR019897 RidA, conserved site PAJ_RS08065 63b44e9e604ad239665705d0cf5711e9 114 SUPERFAMILY SSF55298 2 113 3.61E-28 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PAJ_RS08065 63b44e9e604ad239665705d0cf5711e9 114 Pfam PF01042 Endoribonuclease L-PSP 4 113 7.5E-25 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family PAJ_RS08065 63b44e9e604ad239665705d0cf5711e9 114 PANTHER PTHR11803:SF17 1 113 4.6E-31 T 14-09-2016 PAJ_RS08065 63b44e9e604ad239665705d0cf5711e9 114 PANTHER PTHR11803 1 113 4.6E-31 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family PAJ_RS08065 63b44e9e604ad239665705d0cf5711e9 114 Gene3D G3DSA:3.30.1330.40 6 113 5.9E-22 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 Gene3D G3DSA:3.40.50.720 9 253 4.9E-73 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 192 0.0067 T 14-09-2016 PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.4E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.4E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.4E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 SUPERFAMILY SSF51735 9 254 9.79E-71 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PANTHER PTHR24322 157 193 5.7E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PANTHER PTHR24322 12 140 5.7E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 7.1E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 7.1E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 7.1E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 7.1E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.1E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 7.1E-38 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07020 a3ad1faab3612ccd6ad011aaa079d6c2 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 252 2.3E-64 T 14-09-2016 PAJ_RS08175 cd0385f47108b9f93b6143e3447d9cb5 414 SUPERFAMILY SSF48695 209 242 3.73E-5 T 14-09-2016 IPR011031 Multihaem cytochrome PAJ_RS08175 cd0385f47108b9f93b6143e3447d9cb5 414 PANTHER PTHR30462 1 414 3.2E-229 T 14-09-2016 PAJ_RS08175 cd0385f47108b9f93b6143e3447d9cb5 414 Pfam PF04403 Paraquat-inducible protein A 54 204 1.3E-37 T 14-09-2016 IPR007498 Paraquat-inducible protein A PAJ_RS08175 cd0385f47108b9f93b6143e3447d9cb5 414 Pfam PF04403 Paraquat-inducible protein A 250 404 1.0E-44 T 14-09-2016 IPR007498 Paraquat-inducible protein A PAJ_RS08175 cd0385f47108b9f93b6143e3447d9cb5 414 PANTHER PTHR30462:SF1 1 414 3.2E-229 T 14-09-2016 PAJ_RS08175 cd0385f47108b9f93b6143e3447d9cb5 414 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 4 404 6.8E-174 T 14-09-2016 IPR005219 Conserved hypothetical protein CHP00155 PAJ_RS04930 21421710077cc04849337efd72850fd6 189 PANTHER PTHR34227:SF2 1 185 2.3E-69 T 14-09-2016 PAJ_RS04930 21421710077cc04849337efd72850fd6 189 PIRSF PIRSF004690 1 187 1.1E-54 T 14-09-2016 IPR026269 Tat proofreading chaperone DmsD-type PAJ_RS04930 21421710077cc04849337efd72850fd6 189 SUPERFAMILY SSF89155 2 180 5.89E-42 T 14-09-2016 IPR020945 DMSO/Nitrate reductase chaperone PAJ_RS04930 21421710077cc04849337efd72850fd6 189 Gene3D G3DSA:1.10.3480.10 1 181 2.8E-46 T 14-09-2016 IPR020945 DMSO/Nitrate reductase chaperone PAJ_RS04930 21421710077cc04849337efd72850fd6 189 PANTHER PTHR34227 1 185 2.3E-69 T 14-09-2016 PAJ_RS04930 21421710077cc04849337efd72850fd6 189 Pfam PF02613 Nitrate reductase delta subunit 35 147 2.6E-12 T 14-09-2016 IPR020945 DMSO/Nitrate reductase chaperone PAJ_RS01535 47fe09936588689b72894434fbd0b904 422 PANTHER PTHR41972 1 412 1.8E-58 T 14-09-2016 PAJ_RS01535 47fe09936588689b72894434fbd0b904 422 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 31 45 - T 14-09-2016 IPR033379 Histidine acid phosphatase active site PAJ_RS01535 47fe09936588689b72894434fbd0b904 422 Gene3D G3DSA:3.40.50.1240 27 139 2.0E-67 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS01535 47fe09936588689b72894434fbd0b904 422 Gene3D G3DSA:3.40.50.1240 270 411 2.0E-67 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS01535 47fe09936588689b72894434fbd0b904 422 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 30 354 5.6E-24 T 14-09-2016 IPR000560 Histidine phosphatase superfamily, clade-2 GO:0003993 PAJ_RS01535 47fe09936588689b72894434fbd0b904 422 Gene3D G3DSA:3.40.50.1240 140 267 1.9E-33 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS01535 47fe09936588689b72894434fbd0b904 422 SUPERFAMILY SSF53254 27 404 7.58E-58 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS15040 49307ad4e05db42bbbc05228c87bf4ec 230 Pfam PF01988 VIT family 15 222 7.4E-52 T 14-09-2016 IPR008217 Ccc1 family PAJ_RS15040 49307ad4e05db42bbbc05228c87bf4ec 230 PANTHER PTHR31851 10 224 3.1E-53 T 14-09-2016 PAJ_RS00625 4f003337b1bcfe5bd623fa2fd134d1e6 426 PANTHER PTHR11986:SF5 1 426 1.6E-239 T 14-09-2016 PAJ_RS00625 4f003337b1bcfe5bd623fa2fd134d1e6 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS00625 4f003337b1bcfe5bd623fa2fd134d1e6 426 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 107.21 T 14-09-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 PAJ_RS00625 4f003337b1bcfe5bd623fa2fd134d1e6 426 Gene3D G3DSA:3.40.640.10 71 315 7.7E-85 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS00625 4f003337b1bcfe5bd623fa2fd134d1e6 426 Pfam PF00202 Aminotransferase class-III 33 398 4.5E-79 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS00625 4f003337b1bcfe5bd623fa2fd134d1e6 426 Gene3D G3DSA:3.90.1150.10 2 69 2.1E-46 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS00625 4f003337b1bcfe5bd623fa2fd134d1e6 426 Gene3D G3DSA:3.90.1150.10 319 425 2.1E-46 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS00625 4f003337b1bcfe5bd623fa2fd134d1e6 426 PANTHER PTHR11986 1 426 1.6E-239 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS00625 4f003337b1bcfe5bd623fa2fd134d1e6 426 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 425 1.8E-201 T 14-09-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 PAJ_RS00625 4f003337b1bcfe5bd623fa2fd134d1e6 426 SUPERFAMILY SSF53383 1 425 1.1E-139 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS12105 cd37f1dae75b80475ce4552e001beb1a 292 Gene3D G3DSA:3.40.50.10330 3 154 2.7E-41 T 14-09-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PAJ_RS12105 cd37f1dae75b80475ce4552e001beb1a 292 PANTHER PTHR20275 8 291 4.2E-110 T 14-09-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PAJ_RS12105 cd37f1dae75b80475ce4552e001beb1a 292 Hamap MF_00361 NAD kinase [nadK]. 6 287 33.233 T 14-09-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PAJ_RS12105 cd37f1dae75b80475ce4552e001beb1a 292 Pfam PF01513 ATP-NAD kinase 8 271 2.9E-77 T 14-09-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PAJ_RS12105 cd37f1dae75b80475ce4552e001beb1a 292 Gene3D G3DSA:2.60.200.30 155 261 2.5E-41 T 14-09-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PAJ_RS12105 cd37f1dae75b80475ce4552e001beb1a 292 SUPERFAMILY SSF111331 8 289 3.66E-92 T 14-09-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain PAJ_RS03500 e3005c6b00e78b70ec1389ccde9daee1 106 PANTHER PTHR34068:SF1 1 106 3.2E-46 T 14-09-2016 PAJ_RS03500 e3005c6b00e78b70ec1389ccde9daee1 106 Gene3D G3DSA:3.30.110.70 1 105 1.1E-38 T 14-09-2016 IPR002765 Uncharacterised protein family UPF0145 PAJ_RS03500 e3005c6b00e78b70ec1389ccde9daee1 106 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 24.835 T 14-09-2016 IPR002765 Uncharacterised protein family UPF0145 PAJ_RS03500 e3005c6b00e78b70ec1389ccde9daee1 106 PANTHER PTHR34068 1 106 3.2E-46 T 14-09-2016 PAJ_RS03500 e3005c6b00e78b70ec1389ccde9daee1 106 Pfam PF01906 Putative heavy-metal-binding 1 105 4.8E-41 T 14-09-2016 IPR002765 Uncharacterised protein family UPF0145 PAJ_RS03500 e3005c6b00e78b70ec1389ccde9daee1 106 SUPERFAMILY SSF117782 1 105 2.09E-38 T 14-09-2016 IPR002765 Uncharacterised protein family UPF0145 PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 Gene3D G3DSA:3.30.70.120 1 112 9.2E-51 T 14-09-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 SUPERFAMILY SSF54913 1 112 1.84E-46 T 14-09-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 14-09-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 PANTHER PTHR30115 1 112 1.1E-67 T 14-09-2016 PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 PRINTS PR00340 P-II protein signature 2 17 1.5E-43 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 PRINTS PR00340 P-II protein signature 52 75 1.5E-43 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 PRINTS PR00340 P-II protein signature 23 41 1.5E-43 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 PRINTS PR00340 P-II protein signature 83 103 1.5E-43 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 14-09-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 SMART SM00938 4 105 3.4E-67 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.7E-43 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS11970 1fa7eeeeaad46c6c3a880dc818a8aa15 112 PIRSF PIRSF039144 1 112 2.3E-57 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PAJ_RS01385 9b79d25e6773045bf7b47c8215f8736a 434 PANTHER PTHR33989 1 426 2.2E-151 T 14-09-2016 PAJ_RS01385 9b79d25e6773045bf7b47c8215f8736a 434 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 17 425 1.4E-114 T 14-09-2016 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 PAJ_RS01385 9b79d25e6773045bf7b47c8215f8736a 434 Pfam PF02378 Phosphotransferase system, EIIC 33 352 1.6E-58 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS01385 9b79d25e6773045bf7b47c8215f8736a 434 PIRSF PIRSF006351 5 433 2.2E-142 T 14-09-2016 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 Gene3D G3DSA:3.40.47.10 263 412 8.4E-63 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 PIRSF PIRSF000447 1 413 4.9E-200 T 14-09-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 SUPERFAMILY SSF53901 4 252 1.32E-75 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 SMART SM00825 Beta-ketoacyl synthase 6 413 1.0E-13 T 14-09-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 Gene3D G3DSA:3.40.47.10 2 260 4.1E-74 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 2.9E-60 T 14-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 SUPERFAMILY SSF53901 215 412 6.31E-73 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 14-09-2016 IPR018201 Beta-ketoacyl synthase, active site PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 PANTHER PTHR11712 3 412 1.2E-206 T 14-09-2016 PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 5.3E-40 T 14-09-2016 IPR014031 Beta-ketoacyl synthase, C-terminal PAJ_RS04555 47cfa5f5e31558f9117b5c97f8c4d2ff 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 411 2.3E-194 T 14-09-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 PAJ_RS15420 19ffed8ca5a9645c66d557e0c7742619 379 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 7 315 51.587 T 14-09-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS15420 19ffed8ca5a9645c66d557e0c7742619 379 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 14 348 8.5E-155 T 14-09-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS15420 19ffed8ca5a9645c66d557e0c7742619 379 SUPERFAMILY SSF46548 139 256 2.82E-19 T 14-09-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PAJ_RS15420 19ffed8ca5a9645c66d557e0c7742619 379 Pfam PF13484 4Fe-4S double cluster binding domain 192 256 1.4E-18 T 14-09-2016 PAJ_RS15420 19ffed8ca5a9645c66d557e0c7742619 379 Pfam PF08331 Domain of unknown function (DUF1730) 62 140 2.1E-24 T 14-09-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700|UniPathway: UPA00392 PAJ_RS15420 19ffed8ca5a9645c66d557e0c7742619 379 Gene3D G3DSA:3.30.70.20 190 256 3.5E-6 T 14-09-2016 PAJ_RS15420 19ffed8ca5a9645c66d557e0c7742619 379 PANTHER PTHR30002:SF4 2 371 2.4E-207 T 14-09-2016 PAJ_RS15420 19ffed8ca5a9645c66d557e0c7742619 379 PANTHER PTHR30002 2 371 2.4E-207 T 14-09-2016 PAJ_RS15420 19ffed8ca5a9645c66d557e0c7742619 379 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 193 204 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS10280 6bdb9129e67a367592937c40acfd8255 325 PANTHER PTHR13748 1 325 2.8E-74 T 14-09-2016 PAJ_RS10280 6bdb9129e67a367592937c40acfd8255 325 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 4 178 2.9E-41 T 14-09-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PAJ_RS10280 6bdb9129e67a367592937c40acfd8255 325 SUPERFAMILY SSF52540 4 177 1.18E-26 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10280 6bdb9129e67a367592937c40acfd8255 325 Gene3D G3DSA:3.40.50.300 2 191 9.3E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19245 c18f052eee1a78826d7f0e559ce873d3 271 PANTHER PTHR32243 6 271 4.1E-71 T 14-09-2016 PAJ_RS19245 c18f052eee1a78826d7f0e559ce873d3 271 SUPERFAMILY SSF161098 7 271 4.3E-66 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS19245 c18f052eee1a78826d7f0e559ce873d3 271 Gene3D G3DSA:1.10.3720.10 9 259 7.4E-59 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS19245 c18f052eee1a78826d7f0e559ce873d3 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 261 4.2E-23 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS06685 e4f73e8aed38df44c3dbdb7280ee38e4 343 Pfam PF00107 Zinc-binding dehydrogenase 161 297 8.8E-20 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS06685 e4f73e8aed38df44c3dbdb7280ee38e4 343 SUPERFAMILY SSF51735 126 303 2.45E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06685 e4f73e8aed38df44c3dbdb7280ee38e4 343 SUPERFAMILY SSF50129 285 340 4.71E-7 T 14-09-2016 IPR011032 GroES-like PAJ_RS06685 e4f73e8aed38df44c3dbdb7280ee38e4 343 SMART SM00829 22 339 1.2E-5 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS06685 e4f73e8aed38df44c3dbdb7280ee38e4 343 Gene3D G3DSA:3.40.50.720 143 309 2.9E-63 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06685 e4f73e8aed38df44c3dbdb7280ee38e4 343 SUPERFAMILY SSF50129 6 146 5.36E-44 T 14-09-2016 IPR011032 GroES-like PAJ_RS06685 e4f73e8aed38df44c3dbdb7280ee38e4 343 PANTHER PTHR11695:SF557 26 342 2.7E-166 T 14-09-2016 PAJ_RS06685 e4f73e8aed38df44c3dbdb7280ee38e4 343 Pfam PF16884 N-terminal domain of oxidoreductase 10 114 1.3E-41 T 14-09-2016 PAJ_RS06685 e4f73e8aed38df44c3dbdb7280ee38e4 343 PANTHER PTHR11695 26 342 2.7E-166 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS06685 e4f73e8aed38df44c3dbdb7280ee38e4 343 Gene3D G3DSA:3.90.180.10 4 142 2.7E-55 T 14-09-2016 IPR011032 GroES-like PAJ_RS08005 ff5bd4212540d6208e32c9c3bdd44d33 176 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 167 21.551 T 14-09-2016 IPR022920 Disulphide bond formation protein DsbB PAJ_RS08005 ff5bd4212540d6208e32c9c3bdd44d33 176 PANTHER PTHR36570:SF2 1 176 1.4E-88 T 14-09-2016 PAJ_RS08005 ff5bd4212540d6208e32c9c3bdd44d33 176 PANTHER PTHR36570 1 176 1.4E-88 T 14-09-2016 PAJ_RS08005 ff5bd4212540d6208e32c9c3bdd44d33 176 Pfam PF02600 Disulfide bond formation protein DsbB 12 158 5.7E-42 T 14-09-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 PAJ_RS08005 ff5bd4212540d6208e32c9c3bdd44d33 176 SUPERFAMILY SSF158442 15 161 1.83E-41 T 14-09-2016 PAJ_RS08005 ff5bd4212540d6208e32c9c3bdd44d33 176 Gene3D G3DSA:1.20.1550.10 1 174 7.7E-66 T 14-09-2016 IPR023380 Disulphide bond formation protein DsbB-like domain PAJ_RS12560 f87f88ca1f15f9536a2d1a9c45e8d62a 135 Pfam PF01638 HxlR-like helix-turn-helix 25 111 1.4E-23 T 14-09-2016 IPR002577 Helix-turn-helix, HxlR type PAJ_RS12560 f87f88ca1f15f9536a2d1a9c45e8d62a 135 SUPERFAMILY SSF46785 15 119 2.9E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12560 f87f88ca1f15f9536a2d1a9c45e8d62a 135 Gene3D G3DSA:1.10.10.10 11 122 2.2E-35 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12560 f87f88ca1f15f9536a2d1a9c45e8d62a 135 PANTHER PTHR33204 2 117 3.0E-29 T 14-09-2016 PAJ_RS07600 9dcd26f4c070e5deabd6085de09e9325 237 PANTHER PTHR32119 3 234 1.0E-120 T 14-09-2016 PAJ_RS07600 9dcd26f4c070e5deabd6085de09e9325 237 PANTHER PTHR32119:SF2 3 234 1.0E-120 T 14-09-2016 PAJ_RS07600 9dcd26f4c070e5deabd6085de09e9325 237 Gene3D G3DSA:3.20.20.70 5 232 1.7E-89 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS07600 9dcd26f4c070e5deabd6085de09e9325 237 SMART SM00934 8 229 2.0E-97 T 14-09-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS07600 9dcd26f4c070e5deabd6085de09e9325 237 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 6 234 39.713 T 14-09-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS07600 9dcd26f4c070e5deabd6085de09e9325 237 SUPERFAMILY SSF51366 7 231 4.71E-80 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PAJ_RS07600 9dcd26f4c070e5deabd6085de09e9325 237 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 10 228 2.1E-57 T 14-09-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS07600 9dcd26f4c070e5deabd6085de09e9325 237 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 60 73 - T 14-09-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS07600 9dcd26f4c070e5deabd6085de09e9325 237 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 8 228 2.2E-55 T 14-09-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS00280 da597475ba5fe76b8a9151717c31878e 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 140 4.8E-21 T 14-09-2016 IPR020603 MraZ domain PAJ_RS00280 da597475ba5fe76b8a9151717c31878e 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 1.8E-21 T 14-09-2016 IPR020603 MraZ domain PAJ_RS00280 da597475ba5fe76b8a9151717c31878e 152 SUPERFAMILY SSF89447 1 135 5.02E-44 T 14-09-2016 PAJ_RS00280 da597475ba5fe76b8a9151717c31878e 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 152 9.0E-61 T 14-09-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 PAJ_RS00280 da597475ba5fe76b8a9151717c31878e 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 140 6.0E-70 T 14-09-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 PAJ_RS00280 da597475ba5fe76b8a9151717c31878e 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 55.674 T 14-09-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 PAJ_RS00280 da597475ba5fe76b8a9151717c31878e 152 PANTHER PTHR34701 2 151 2.2E-62 T 14-09-2016 PAJ_RS15865 0248f2d757165d7920526c82a46e02dd 257 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 11 100 1.9E-20 T 14-09-2016 IPR010627 Peptidase A24A, N-terminal KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PAJ_RS15865 0248f2d757165d7920526c82a46e02dd 257 PANTHER PTHR30487 2 255 7.3E-58 T 14-09-2016 PAJ_RS15865 0248f2d757165d7920526c82a46e02dd 257 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 120 137 8.9E-16 T 14-09-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PAJ_RS15865 0248f2d757165d7920526c82a46e02dd 257 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 200 215 8.9E-16 T 14-09-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PAJ_RS15865 0248f2d757165d7920526c82a46e02dd 257 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 188 199 8.9E-16 T 14-09-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PAJ_RS15865 0248f2d757165d7920526c82a46e02dd 257 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 177 187 8.9E-16 T 14-09-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PAJ_RS15865 0248f2d757165d7920526c82a46e02dd 257 PANTHER PTHR30487:SF0 2 255 7.3E-58 T 14-09-2016 PAJ_RS15865 0248f2d757165d7920526c82a46e02dd 257 Pfam PF01478 Type IV leader peptidase family 112 217 6.2E-20 T 14-09-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 137 6.3E-21 T 14-09-2016 IPR016188 PurM-like, N-terminal domain PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 PANTHER PTHR30270:SF0 1 322 8.8E-140 T 14-09-2016 PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 PANTHER PTHR30270 1 322 8.8E-140 T 14-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 SUPERFAMILY SSF56042 143 308 1.79E-39 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 322 1.9E-115 T 14-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 Gene3D G3DSA:3.90.650.10 146 322 7.7E-53 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 PIRSF PIRSF005303 1 322 1.0E-88 T 14-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 SUPERFAMILY SSF55326 4 137 8.2E-33 T 14-09-2016 PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 3 319 31.905 T 14-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 Pfam PF02769 AIR synthase related protein, C-terminal domain 150 299 3.7E-10 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain PAJ_RS01600 3e22947b268cf7565e6246b894986f6d 325 Gene3D G3DSA:3.30.1330.10 3 141 1.2E-44 T 14-09-2016 IPR016188 PurM-like, N-terminal domain PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.1E-40 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.1E-40 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.1E-40 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.1E-40 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.1E-40 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 Pfam PF00334 Nucleoside diphosphate kinase 4 138 1.7E-56 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 PANTHER PTHR11349 1 143 5.1E-81 T 14-09-2016 PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 SMART SM00562 3 140 4.3E-89 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 SUPERFAMILY SSF54919 1 141 3.54E-61 T 14-09-2016 PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 Gene3D G3DSA:3.30.70.141 1 140 3.2E-61 T 14-09-2016 PAJ_RS11885 fa92d0b0904b82127ca3f2148ed3c375 143 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.852 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 Gene3D G3DSA:3.40.50.2300 169 331 4.8E-50 T 14-09-2016 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 PANTHER PTHR30146:SF48 1 334 5.0E-114 T 14-09-2016 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 Gene3D G3DSA:1.10.260.40 2 57 8.2E-26 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 SMART SM00354 1 71 2.7E-31 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.0E-20 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 SUPERFAMILY SSF47413 1 59 4.61E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 PANTHER PTHR30146 1 334 5.0E-114 T 14-09-2016 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 Gene3D G3DSA:3.40.50.2300 58 168 4.2E-36 T 14-09-2016 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 Pfam PF13377 Periplasmic binding protein-like domain 171 330 5.8E-32 T 14-09-2016 PAJ_RS01400 c9b1e9eee53a7bc3f9ff58c46a6ff25b 337 SUPERFAMILY SSF53822 61 335 1.61E-66 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 ProSitePatterns PS00927 Trehalase signature 1. 156 169 - T 14-09-2016 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 Pfam PF01204 Trehalase 62 540 2.2E-163 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 PANTHER PTHR23403:SF13 1 549 2.7E-281 T 14-09-2016 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 SUPERFAMILY SSF48208 46 547 7.48E-163 T 14-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 PANTHER PTHR23403 1 549 2.7E-281 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 Hamap MF_01060 Periplasmic trehalase [treA]. 6 542 84.174 T 14-09-2016 IPR023720 Trehalase, periplasmic GO:0004555|GO:0005993|GO:0042597|GO:0071474 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 PRINTS PR00744 Glycosyl hydrolase family 37 signature 524 537 1.6E-44 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 PRINTS PR00744 Glycosyl hydrolase family 37 signature 446 462 1.6E-44 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 PRINTS PR00744 Glycosyl hydrolase family 37 signature 198 216 1.6E-44 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 PRINTS PR00744 Glycosyl hydrolase family 37 signature 273 290 1.6E-44 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 PRINTS PR00744 Glycosyl hydrolase family 37 signature 307 324 1.6E-44 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 PRINTS PR00744 Glycosyl hydrolase family 37 signature 339 356 1.6E-44 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 PRINTS PR00744 Glycosyl hydrolase family 37 signature 382 398 1.6E-44 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04915 f0947a1cad846eae76fd0a079a64342d 561 ProSitePatterns PS00928 Trehalase signature 2. 453 462 - T 14-09-2016 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS04150 76df27d57bb7848b8ed0e08c6846b71a 404 SUPERFAMILY SSF56563 130 398 2.75E-69 T 14-09-2016 PAJ_RS04150 76df27d57bb7848b8ed0e08c6846b71a 404 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 3 397 3.1E-51 T 14-09-2016 IPR006444 Phage major capsid protein, HK97 PAJ_RS04150 76df27d57bb7848b8ed0e08c6846b71a 404 Pfam PF05065 Phage capsid family 130 397 2.8E-51 T 14-09-2016 IPR024455 Phage capsid PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 Hamap MF_00551 Uridine kinase [udk]. 5 213 40.917 T 14-09-2016 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 SUPERFAMILY SSF52540 8 205 6.01E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 PRINTS PR00988 Uridine kinase signature 8 25 6.7E-38 T 14-09-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 PRINTS PR00988 Uridine kinase signature 42 53 6.7E-38 T 14-09-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 PRINTS PR00988 Uridine kinase signature 157 168 6.7E-38 T 14-09-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 PRINTS PR00988 Uridine kinase signature 143 153 6.7E-38 T 14-09-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 PRINTS PR00988 Uridine kinase signature 179 192 6.7E-38 T 14-09-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 PRINTS PR00988 Uridine kinase signature 87 102 6.7E-38 T 14-09-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 PANTHER PTHR10285 1 213 2.9E-90 T 14-09-2016 PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 Gene3D G3DSA:3.40.50.300 3 205 3.5E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 199 1.4E-43 T 14-09-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 PAJ_RS09985 0fa2f847d1ac30d221bb093438d35dc7 213 TIGRFAM TIGR00235 udk: uridine kinase 5 213 1.2E-94 T 14-09-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 PIRSF PIRSF000151 1 417 1.9E-171 T 14-09-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 1 416 40.711 T 14-09-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 323 344 - T 14-09-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 PANTHER PTHR11063:SF8 1 417 3.2E-185 T 14-09-2016 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 Gene3D G3DSA:3.40.309.10 223 374 9.1E-36 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 PANTHER PTHR11063 1 417 3.2E-185 T 14-09-2016 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 Gene3D G3DSA:3.40.605.10 2 220 4.9E-103 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 Gene3D G3DSA:3.40.605.10 375 415 4.9E-103 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 Pfam PF00171 Aldehyde dehydrogenase family 3 280 1.2E-12 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 9 406 1.7E-185 T 14-09-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PAJ_RS01180 4987c93bc89b69fb77413422385d3593 417 SUPERFAMILY SSF53720 2 414 1.09E-111 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS18585 01b7d53b0ebd8127456ecd365660c0ad 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 466 3.1E-128 T 14-09-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 PAJ_RS18585 01b7d53b0ebd8127456ecd365660c0ad 483 Pfam PF02386 Cation transport protein 37 477 1.2E-90 T 14-09-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 PAJ_RS18585 01b7d53b0ebd8127456ecd365660c0ad 483 PANTHER PTHR32024 1 483 2.0E-279 T 14-09-2016 PAJ_RS18585 01b7d53b0ebd8127456ecd365660c0ad 483 PIRSF PIRSF006247 1 483 1.2E-184 T 14-09-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 PAJ_RS18585 01b7d53b0ebd8127456ecd365660c0ad 483 PANTHER PTHR32024:SF2 1 483 2.0E-279 T 14-09-2016 PAJ_RS18225 f399956a167ef1feee3461f67a142c8e 290 PANTHER PTHR23024:SF41 48 287 6.6E-46 T 14-09-2016 PAJ_RS18225 f399956a167ef1feee3461f67a142c8e 290 SUPERFAMILY SSF53474 35 267 1.66E-32 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS18225 f399956a167ef1feee3461f67a142c8e 290 Pfam PF00326 Prolyl oligopeptidase family 176 266 2.9E-11 T 14-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 PAJ_RS18225 f399956a167ef1feee3461f67a142c8e 290 Gene3D G3DSA:3.40.50.1820 41 287 2.3E-58 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS18225 f399956a167ef1feee3461f67a142c8e 290 PANTHER PTHR23024 48 287 6.6E-46 T 14-09-2016 PAJ_RS07890 e56684bf944a61c857ee245bf34fc88e 268 Gene3D G3DSA:3.60.10.10 1 266 8.7E-86 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS07890 e56684bf944a61c857ee245bf34fc88e 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 14-09-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 PAJ_RS07890 e56684bf944a61c857ee245bf34fc88e 268 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 223 234 - T 14-09-2016 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 PAJ_RS07890 e56684bf944a61c857ee245bf34fc88e 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 266 1.2E-88 T 14-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 PAJ_RS07890 e56684bf944a61c857ee245bf34fc88e 268 SUPERFAMILY SSF56219 1 267 1.01E-85 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS07890 e56684bf944a61c857ee245bf34fc88e 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 266 2.0E-103 T 14-09-2016 PAJ_RS07890 e56684bf944a61c857ee245bf34fc88e 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 259 6.0E-29 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS07890 e56684bf944a61c857ee245bf34fc88e 268 PANTHER PTHR22748:SF7 1 266 3.8E-133 T 14-09-2016 PAJ_RS07890 e56684bf944a61c857ee245bf34fc88e 268 PANTHER PTHR22748 1 266 3.8E-133 T 14-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 PAJ_RS13800 5f2f4bf691f981a99f2332927eb6f3d8 170 PANTHER PTHR23091 1 145 5.4E-12 T 14-09-2016 PAJ_RS13800 5f2f4bf691f981a99f2332927eb6f3d8 170 Pfam PF00583 Acetyltransferase (GNAT) family 67 147 1.1E-8 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS13800 5f2f4bf691f981a99f2332927eb6f3d8 170 PANTHER PTHR23091:SF258 1 145 5.4E-12 T 14-09-2016 PAJ_RS13800 5f2f4bf691f981a99f2332927eb6f3d8 170 SUPERFAMILY SSF55729 3 150 1.98E-18 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS13800 5f2f4bf691f981a99f2332927eb6f3d8 170 Gene3D G3DSA:3.40.630.30 5 145 5.8E-23 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS18510 a15dd99697b5e6bece8b432a19669026 499 PANTHER PTHR30563 5 494 3.1E-136 T 14-09-2016 PAJ_RS18510 a15dd99697b5e6bece8b432a19669026 499 Pfam PF02646 RmuC family 164 460 6.6E-105 T 14-09-2016 IPR003798 DNA recombination RmuC PAJ_RS15595 91f587a2dace2c1c6387386e4fe8de9c 294 Gene3D G3DSA:3.40.50.150 98 286 2.4E-39 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS15595 91f587a2dace2c1c6387386e4fe8de9c 294 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 292 1.1E-101 T 14-09-2016 PAJ_RS15595 91f587a2dace2c1c6387386e4fe8de9c 294 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 286 3.3E-115 T 14-09-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 PAJ_RS15595 91f587a2dace2c1c6387386e4fe8de9c 294 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 292 32.451 T 14-09-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 PAJ_RS15595 91f587a2dace2c1c6387386e4fe8de9c 294 PANTHER PTHR18895 12 292 1.2E-167 T 14-09-2016 PAJ_RS15595 91f587a2dace2c1c6387386e4fe8de9c 294 PANTHER PTHR18895:SF69 12 292 1.2E-167 T 14-09-2016 PAJ_RS15595 91f587a2dace2c1c6387386e4fe8de9c 294 PIRSF PIRSF000401 1 294 4.6E-92 T 14-09-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 PAJ_RS15595 91f587a2dace2c1c6387386e4fe8de9c 294 SUPERFAMILY SSF53335 66 289 2.05E-41 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 SMART SM00421 147 204 1.1E-20 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 PANTHER PTHR26402 6 208 9.1E-87 T 14-09-2016 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 Gene3D G3DSA:1.10.10.10 150 207 6.1E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 PANTHER PTHR26402:SF458 6 208 9.1E-87 T 14-09-2016 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 4.5E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 4.5E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 4.5E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 SUPERFAMILY SSF52172 6 134 1.57E-33 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 SMART SM00448 6 119 7.7E-32 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 203 1.6E-21 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 Pfam PF00072 Response regulator receiver domain 8 118 3.4E-28 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 SUPERFAMILY SSF46894 132 207 3.4E-20 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS11510 484977693700dcc440ce5513e42132c3 210 Gene3D G3DSA:3.40.50.2300 5 149 5.3E-37 T 14-09-2016 PAJ_RS12495 98485162a1323dff92e66cff108ab85d 105 Pfam PF05957 Bacterial protein of unknown function (DUF883) 12 104 2.0E-25 T 14-09-2016 IPR010279 Protein of unknown function DUF883, ElaB PAJ_RS12495 98485162a1323dff92e66cff108ab85d 105 PANTHER PTHR35893 1 105 6.3E-51 T 14-09-2016 PAJ_RS12495 98485162a1323dff92e66cff108ab85d 105 Gene3D G3DSA:1.20.120.20 11 78 4.3E-4 T 14-09-2016 PAJ_RS12495 98485162a1323dff92e66cff108ab85d 105 PANTHER PTHR35893:SF3 1 105 6.3E-51 T 14-09-2016 PAJ_RS16715 c58079792ca3c7d18825a5b64ab92d7c 374 SUPERFAMILY SSF55729 173 343 7.42E-36 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS16715 c58079792ca3c7d18825a5b64ab92d7c 374 PANTHER PTHR31384 1 305 2.1E-52 T 14-09-2016 PAJ_RS16715 c58079792ca3c7d18825a5b64ab92d7c 374 PANTHER PTHR31384:SF26 1 305 2.1E-52 T 14-09-2016 PAJ_RS16715 c58079792ca3c7d18825a5b64ab92d7c 374 SUPERFAMILY SSF51658 70 207 2.98E-5 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS16715 c58079792ca3c7d18825a5b64ab92d7c 374 Gene3D G3DSA:3.40.630.30 173 321 1.5E-19 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS16715 c58079792ca3c7d18825a5b64ab92d7c 374 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 9 371 6.9E-146 T 14-09-2016 IPR007434 Peptidogalycan biosysnthesis/recognition PAJ_RS17150 4d635a8bbc134b5b92e6fefe83ef8e8a 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 228 5.4E-21 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS17150 4d635a8bbc134b5b92e6fefe83ef8e8a 232 SMART SM00862 152 228 1.8E-22 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS17150 4d635a8bbc134b5b92e6fefe83ef8e8a 232 SMART SM00448 2 111 4.5E-47 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS17150 4d635a8bbc134b5b92e6fefe83ef8e8a 232 PANTHER PTHR26402 2 231 2.9E-81 T 14-09-2016 PAJ_RS17150 4d635a8bbc134b5b92e6fefe83ef8e8a 232 Gene3D G3DSA:3.40.50.2300 2 132 2.5E-42 T 14-09-2016 PAJ_RS17150 4d635a8bbc134b5b92e6fefe83ef8e8a 232 SUPERFAMILY SSF52172 2 188 1.42E-41 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS17150 4d635a8bbc134b5b92e6fefe83ef8e8a 232 Gene3D G3DSA:1.10.10.10 133 229 5.9E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS17150 4d635a8bbc134b5b92e6fefe83ef8e8a 232 Pfam PF00072 Response regulator receiver domain 4 112 2.1E-30 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS17150 4d635a8bbc134b5b92e6fefe83ef8e8a 232 PANTHER PTHR26402:SF117 2 231 2.9E-81 T 14-09-2016 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 307 329 - T 14-09-2016 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 SUPERFAMILY SSF58104 249 530 5.1E-76 T 14-09-2016 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 PANTHER PTHR32089 18 532 1.3E-232 T 14-09-2016 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 Pfam PF00672 HAMP domain 212 276 5.3E-14 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 SUPERFAMILY SSF47170 51 181 1.96E-12 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 Gene3D G3DSA:1.10.287.950 297 501 3.9E-63 T 14-09-2016 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 SMART SM00319 51 191 8.2E-4 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 341 528 1.7E-65 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 SMART SM00283 282 529 1.6E-90 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 Pfam PF02203 Tar ligand binding domain homologue 16 182 1.1E-22 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 74 89 4.7E-60 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 303 332 4.7E-60 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 380 407 4.7E-60 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 409 438 4.7E-60 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 457 486 4.7E-60 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 SMART SM00304 229 281 9.3E-8 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS08945 99a5c8e6381c2207af00f956166806d5 568 PANTHER PTHR32089:SF35 18 532 1.3E-232 T 14-09-2016 PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 SUPERFAMILY SSF52440 1 113 9.35E-46 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 Gene3D G3DSA:3.30.470.20 204 444 2.4E-99 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 SMART SM00878 336 441 6.6E-64 T 14-09-2016 IPR005482 Biotin carboxylase, C-terminal PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.9E-43 T 14-09-2016 IPR005481 Biotin carboxylase-like, N-terminal domain PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 6.6E-38 T 14-09-2016 IPR005482 Biotin carboxylase, C-terminal PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 6.2E-247 T 14-09-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 SUPERFAMILY SSF51246 331 444 7.85E-43 T 14-09-2016 IPR011054 Rudiment single hybrid motif PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 PANTHER PTHR18866 1 442 0.0 T 14-09-2016 PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 Gene3D G3DSA:3.30.1490.20 130 203 6.3E-31 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 8.7E-85 T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 Gene3D G3DSA:3.40.50.20 1 129 1.2E-49 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS15580 620e88f93cc9f58007b309267bf866d7 449 SUPERFAMILY SSF56059 83 347 2.19E-70 T 14-09-2016 PAJ_RS09680 5e0ab632e0989d594b093056bdd9cc7d 160 Gene3D G3DSA:2.30.110.20 1 159 2.1E-61 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS09680 5e0ab632e0989d594b093056bdd9cc7d 160 SUPERFAMILY SSF141452 2 159 8.76E-49 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS09680 5e0ab632e0989d594b093056bdd9cc7d 160 PANTHER PTHR36152 1 160 2.0E-51 T 14-09-2016 PAJ_RS09680 5e0ab632e0989d594b093056bdd9cc7d 160 Pfam PF05638 Type VI secretion system effector, Hcp 6 126 1.6E-38 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS09680 5e0ab632e0989d594b093056bdd9cc7d 160 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 136 1.5E-18 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS09680 5e0ab632e0989d594b093056bdd9cc7d 160 PANTHER PTHR36152:SF1 1 160 2.0E-51 T 14-09-2016 PAJ_RS07115 57d3d186d6775bbcbddf2cb03bb95e26 79 Gene3D G3DSA:1.10.260.40 6 64 7.0E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS07115 57d3d186d6775bbcbddf2cb03bb95e26 79 SMART SM00530 11 66 1.3E-11 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS07115 57d3d186d6775bbcbddf2cb03bb95e26 79 Pfam PF01381 Helix-turn-helix 13 63 2.6E-14 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS07115 57d3d186d6775bbcbddf2cb03bb95e26 79 SUPERFAMILY SSF47413 5 68 2.2E-17 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS19590 762e1fb484bb787ce981ded7cd901b42 192 PANTHER PTHR30055:SF92 1 190 1.2E-23 T 14-09-2016 PAJ_RS19590 762e1fb484bb787ce981ded7cd901b42 192 PANTHER PTHR30055 1 190 1.2E-23 T 14-09-2016 PAJ_RS19590 762e1fb484bb787ce981ded7cd901b42 192 Gene3D G3DSA:1.10.357.10 3 184 4.4E-14 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS19590 762e1fb484bb787ce981ded7cd901b42 192 SUPERFAMILY SSF46689 2 70 1.08E-6 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS17245 7db3f6673c00884756f28ee5570864e0 365 Pfam PF00534 Glycosyl transferases group 1 194 340 3.8E-26 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 PAJ_RS17245 7db3f6673c00884756f28ee5570864e0 365 SUPERFAMILY SSF53756 2 358 1.04E-59 T 14-09-2016 PAJ_RS17245 7db3f6673c00884756f28ee5570864e0 365 PANTHER PTHR12526:SF141 1 358 1.0E-49 T 14-09-2016 PAJ_RS17245 7db3f6673c00884756f28ee5570864e0 365 PANTHER PTHR12526 1 358 1.0E-49 T 14-09-2016 PAJ_RS17245 7db3f6673c00884756f28ee5570864e0 365 Gene3D G3DSA:3.40.50.2000 196 341 2.1E-16 T 14-09-2016 PAJ_RS17245 7db3f6673c00884756f28ee5570864e0 365 Pfam PF13439 Glycosyltransferase Family 4 9 179 1.7E-17 T 14-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PAJ_RS17925 8054814e442dcacbe337f11faf1fdb6a 305 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 10 303 2.8E-76 T 14-09-2016 IPR010106 Conserved hypothetical protein CHP01784 PAJ_RS17925 8054814e442dcacbe337f11faf1fdb6a 305 PANTHER PTHR34611 3 305 5.1E-187 T 14-09-2016 PAJ_RS17925 8054814e442dcacbe337f11faf1fdb6a 305 Pfam PF04754 Putative transposase, YhgA-like 9 209 5.2E-84 T 14-09-2016 IPR006842 Transposase (putative), YhgA-like PAJ_RS17925 8054814e442dcacbe337f11faf1fdb6a 305 PANTHER PTHR34611:SF3 3 305 5.1E-187 T 14-09-2016 PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 Gene3D G3DSA:3.40.50.270 402 479 6.8E-5 T 14-09-2016 PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 PANTHER PTHR30185:SF5 5 634 8.9E-179 T 14-09-2016 PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 Gene3D G3DSA:1.10.1790.10 295 391 1.4E-21 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 Gene3D G3DSA:1.10.10.10 5 65 2.3E-9 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 Gene3D G3DSA:1.10.10.10 90 151 3.6E-6 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 508 622 8.3E-17 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 PANTHER PTHR30185 5 634 8.9E-179 T 14-09-2016 PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 SUPERFAMILY SSF55804 490 623 9.42E-24 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 SUPERFAMILY SSF63520 295 391 3.66E-21 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 Pfam PF00874 PRD domain 300 386 1.4E-18 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 Pfam PF05043 Mga helix-turn-helix domain 89 165 2.8E-12 T 14-09-2016 IPR007737 Mga helix-turn-helix domain PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 Gene3D G3DSA:3.40.930.10 489 625 1.9E-24 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 SUPERFAMILY SSF52794 402 478 3.82E-5 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS15110 0d2f01d9119f540cd76de37b365ceb7c 636 Pfam PF08279 HTH domain 8 63 2.4E-8 T 14-09-2016 IPR013196 Helix-turn-helix, type 11 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 14-09-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 9.2E-60 T 14-09-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 PANTHER PTHR30437 1 157 6.5E-73 T 14-09-2016 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 SUPERFAMILY SSF54534 82 157 2.22E-24 T 14-09-2016 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 2.2E-32 T 14-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.903 T 14-09-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 Gene3D G3DSA:1.10.287.180 1 75 8.8E-36 T 14-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 PIRSF PIRSF006092 1 158 9.6E-56 T 14-09-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 SUPERFAMILY SSF46557 3 78 3.79E-29 T 14-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 Gene3D G3DSA:3.10.50.30 80 157 1.4E-31 T 14-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 2.9E-28 T 14-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PAJ_RS19850 dc58061c44c498c54015ca4a17c15643 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 14-09-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 PAJ_RS07685 9e0d9ac84b32d3311ba7862e3037548d 206 SUPERFAMILY SSF55821 1 204 2.32E-64 T 14-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PAJ_RS07685 9e0d9ac84b32d3311ba7862e3037548d 206 Gene3D G3DSA:3.90.870.10 2 202 3.7E-63 T 14-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PAJ_RS07685 9e0d9ac84b32d3311ba7862e3037548d 206 Pfam PF01300 Telomere recombination 22 198 7.2E-45 T 14-09-2016 IPR006070 YrdC-like domain GO:0003725 PAJ_RS07685 9e0d9ac84b32d3311ba7862e3037548d 206 PANTHER PTHR17490 1 205 1.1E-98 T 14-09-2016 PAJ_RS07685 9e0d9ac84b32d3311ba7862e3037548d 206 PANTHER PTHR17490:SF7 1 205 1.1E-98 T 14-09-2016 PAJ_RS07685 9e0d9ac84b32d3311ba7862e3037548d 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 202 1.5E-70 T 14-09-2016 IPR006070 YrdC-like domain GO:0003725 PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 SUPERFAMILY SSF48008 96 228 1.1E-21 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 SMART SM00895 97 221 2.7E-17 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 Gene3D G3DSA:1.20.120.530 97 230 2.9E-22 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 PANTHER PTHR11751 1 79 1.2E-54 T 14-09-2016 PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 PANTHER PTHR11751:SF421 1 79 1.2E-54 T 14-09-2016 PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 SMART SM00345 13 72 1.1E-23 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 SUPERFAMILY SSF46785 2 76 6.81E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 Gene3D G3DSA:1.10.10.10 4 79 1.0E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 Pfam PF07729 FCD domain 97 220 2.1E-18 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 PANTHER PTHR11751 95 113 1.2E-54 T 14-09-2016 PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 PANTHER PTHR11751:SF421 95 113 1.2E-54 T 14-09-2016 PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 5.0E-22 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 1.5E-8 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS14995 d6369138a949bd70ce1c64fb51be944b 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 1.5E-8 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS08055 9fe1c2e923eab2d6be9cb3902c35ea74 232 SUPERFAMILY SSF53067 5 108 4.14E-27 T 14-09-2016 PAJ_RS08055 9fe1c2e923eab2d6be9cb3902c35ea74 232 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 221 2.9E-64 T 14-09-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 PAJ_RS08055 9fe1c2e923eab2d6be9cb3902c35ea74 232 SUPERFAMILY SSF53067 110 219 4.4E-27 T 14-09-2016 PAJ_RS08055 9fe1c2e923eab2d6be9cb3902c35ea74 232 PANTHER PTHR11735:SF11 1 141 1.0E-57 T 14-09-2016 PAJ_RS08055 9fe1c2e923eab2d6be9cb3902c35ea74 232 Pfam PF00814 Glycoprotease family 30 226 1.6E-27 T 14-09-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS08055 9fe1c2e923eab2d6be9cb3902c35ea74 232 PANTHER PTHR11735 1 141 1.0E-57 T 14-09-2016 PAJ_RS08055 9fe1c2e923eab2d6be9cb3902c35ea74 232 Gene3D G3DSA:3.30.420.40 4 134 8.6E-42 T 14-09-2016 PAJ_RS11215 78e0656f78ce0c596283a8b41bb2a91e 396 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 392 4.8E-136 T 14-09-2016 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS11215 78e0656f78ce0c596283a8b41bb2a91e 396 PANTHER PTHR10590 4 394 1.4E-243 T 14-09-2016 IPR008276 Concentrative nucleoside transporter GO:0005337|GO:0016020|GO:1901642 Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS11215 78e0656f78ce0c596283a8b41bb2a91e 396 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 82 1.1E-18 T 14-09-2016 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS11215 78e0656f78ce0c596283a8b41bb2a91e 396 Pfam PF07670 Nucleoside recognition 92 190 2.4E-6 T 14-09-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS11215 78e0656f78ce0c596283a8b41bb2a91e 396 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 392 9.8E-59 T 14-09-2016 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS11215 78e0656f78ce0c596283a8b41bb2a91e 396 PANTHER PTHR10590:SF13 4 394 1.4E-243 T 14-09-2016 PAJ_RS11575 5f7a3936a6b4e8b4ef785a9b938b9ca4 356 PANTHER PTHR21716 7 356 2.2E-153 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like PAJ_RS11575 5f7a3936a6b4e8b4ef785a9b938b9ca4 356 PANTHER PTHR21716:SF19 7 356 2.2E-153 T 14-09-2016 PAJ_RS11575 5f7a3936a6b4e8b4ef785a9b938b9ca4 356 Pfam PF01594 Domain of unknown function DUF20 20 345 3.7E-76 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like PAJ_RS14245 42e7ba308c6199441977930622e71ce3 568 Gene3D G3DSA:3.40.1130.10 67 257 8.4E-6 T 14-09-2016 PAJ_RS14245 42e7ba308c6199441977930622e71ce3 568 SMART SM00563 77 194 7.1E-10 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PAJ_RS14245 42e7ba308c6199441977930622e71ce3 568 Pfam PF01553 Acyltransferase 67 190 1.8E-10 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PAJ_RS14245 42e7ba308c6199441977930622e71ce3 568 SUPERFAMILY SSF55729 306 464 1.8E-24 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS14245 42e7ba308c6199441977930622e71ce3 568 PANTHER PTHR37323:SF1 11 566 3.3E-90 T 14-09-2016 PAJ_RS14245 42e7ba308c6199441977930622e71ce3 568 Pfam PF13444 Acetyltransferase (GNAT) domain 322 422 3.9E-24 T 14-09-2016 PAJ_RS14245 42e7ba308c6199441977930622e71ce3 568 SUPERFAMILY SSF69593 60 260 5.62E-14 T 14-09-2016 PAJ_RS14245 42e7ba308c6199441977930622e71ce3 568 PANTHER PTHR37323 11 566 3.3E-90 T 14-09-2016 PAJ_RS08025 90c83fc583a76613d676904174b02a0e 232 SUPERFAMILY SSF63848 126 231 6.67E-30 T 14-09-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 PAJ_RS08025 90c83fc583a76613d676904174b02a0e 232 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 128 228 1.6E-30 T 14-09-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 PAJ_RS08025 90c83fc583a76613d676904174b02a0e 232 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 231 1.3E-69 T 14-09-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 PAJ_RS08025 90c83fc583a76613d676904174b02a0e 232 PANTHER PTHR34108 3 232 4.5E-70 T 14-09-2016 PAJ_RS08025 90c83fc583a76613d676904174b02a0e 232 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 103 4.1E-34 T 14-09-2016 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 PAJ_RS08025 90c83fc583a76613d676904174b02a0e 232 Gene3D G3DSA:2.160.20.70 115 231 2.1E-37 T 14-09-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 PAJ_RS08025 90c83fc583a76613d676904174b02a0e 232 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 232 27.736 T 14-09-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 PAJ_RS08025 90c83fc583a76613d676904174b02a0e 232 PANTHER PTHR34108:SF1 3 232 4.5E-70 T 14-09-2016 PAJ_RS13530 bc27aec5984026171c6a5df5e4fc6a16 239 SUPERFAMILY SSF53335 18 237 9.13E-41 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS13530 bc27aec5984026171c6a5df5e4fc6a16 239 Pfam PF02390 Putative methyltransferase 64 233 2.6E-61 T 14-09-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 PAJ_RS13530 bc27aec5984026171c6a5df5e4fc6a16 239 PANTHER PTHR23417 9 239 3.4E-92 T 14-09-2016 PAJ_RS13530 bc27aec5984026171c6a5df5e4fc6a16 239 PANTHER PTHR23417:SF14 9 239 3.4E-92 T 14-09-2016 PAJ_RS13530 bc27aec5984026171c6a5df5e4fc6a16 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 24 238 30.939 T 14-09-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 PAJ_RS13530 bc27aec5984026171c6a5df5e4fc6a16 239 Gene3D G3DSA:3.40.50.150 56 194 8.8E-16 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS13530 bc27aec5984026171c6a5df5e4fc6a16 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 238 7.4E-71 T 14-09-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 PAJ_RS14155 86795608bf5a0d64bff21d82a1aefe5f 627 Pfam PF00905 Penicillin binding protein transpeptidase domain 269 607 1.5E-66 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PAJ_RS14155 86795608bf5a0d64bff21d82a1aefe5f 627 SUPERFAMILY SSF56519 53 249 4.58E-52 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PAJ_RS14155 86795608bf5a0d64bff21d82a1aefe5f 627 SUPERFAMILY SSF56601 250 610 4.88E-86 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS14155 86795608bf5a0d64bff21d82a1aefe5f 627 Gene3D G3DSA:3.90.1310.10 125 248 3.0E-39 T 14-09-2016 PAJ_RS14155 86795608bf5a0d64bff21d82a1aefe5f 627 Pfam PF03717 Penicillin-binding Protein dimerisation domain 60 235 5.4E-47 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PAJ_RS14155 86795608bf5a0d64bff21d82a1aefe5f 627 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 15 610 5.9E-224 T 14-09-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 PAJ_RS14155 86795608bf5a0d64bff21d82a1aefe5f 627 PANTHER PTHR30627 1 611 3.2E-244 T 14-09-2016 PAJ_RS14155 86795608bf5a0d64bff21d82a1aefe5f 627 PANTHER PTHR30627:SF2 1 611 3.2E-244 T 14-09-2016 PAJ_RS14155 86795608bf5a0d64bff21d82a1aefe5f 627 Gene3D G3DSA:3.40.710.10 249 610 6.2E-93 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS03345 6a547ccecdd79515632e95571d0ba40e 319 PANTHER PTHR10188 1 319 8.5E-135 T 14-09-2016 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 PAJ_RS03345 6a547ccecdd79515632e95571d0ba40e 319 Pfam PF01112 Asparaginase 5 316 5.5E-122 T 14-09-2016 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 PAJ_RS03345 6a547ccecdd79515632e95571d0ba40e 319 PANTHER PTHR10188:SF24 1 319 8.5E-135 T 14-09-2016 PAJ_RS03345 6a547ccecdd79515632e95571d0ba40e 319 SUPERFAMILY SSF56235 4 316 3.34E-98 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS16130 6ffab8b1d577aeb4aabf421a798db02d 288 PANTHER PTHR30111 1 284 1.9E-84 T 14-09-2016 PAJ_RS16130 6ffab8b1d577aeb4aabf421a798db02d 288 Gene3D G3DSA:3.90.1280.10 222 278 1.4E-24 T 14-09-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 PAJ_RS16130 6ffab8b1d577aeb4aabf421a798db02d 288 SUPERFAMILY SSF118352 220 277 5.23E-20 T 14-09-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 PAJ_RS16130 6ffab8b1d577aeb4aabf421a798db02d 288 PANTHER PTHR30111:SF1 1 284 1.9E-84 T 14-09-2016 PAJ_RS16130 6ffab8b1d577aeb4aabf421a798db02d 288 Gene3D G3DSA:3.55.30.10 2 172 3.0E-65 T 14-09-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 PAJ_RS16130 6ffab8b1d577aeb4aabf421a798db02d 288 PIRSF PIRSF005261 1 280 2.7E-76 T 14-09-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 PAJ_RS16130 6ffab8b1d577aeb4aabf421a798db02d 288 Pfam PF01430 Hsp33 protein 5 269 1.4E-86 T 14-09-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 PAJ_RS16130 6ffab8b1d577aeb4aabf421a798db02d 288 Gene3D G3DSA:1.10.287.480 174 221 1.4E-26 T 14-09-2016 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain PAJ_RS16130 6ffab8b1d577aeb4aabf421a798db02d 288 SUPERFAMILY SSF64397 5 228 4.58E-75 T 14-09-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 PAJ_RS16130 6ffab8b1d577aeb4aabf421a798db02d 288 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 280 32.672 T 14-09-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 PAJ_RS03195 6f08c0504312d53dc2042b5b29bbb0f4 518 PANTHER PTHR10362 6 495 2.2E-230 T 14-09-2016 PAJ_RS03195 6f08c0504312d53dc2042b5b29bbb0f4 518 SUPERFAMILY SSF48557 5 505 1.81E-184 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 PAJ_RS03195 6f08c0504312d53dc2042b5b29bbb0f4 518 Pfam PF00221 Aromatic amino acid lyase 16 473 1.2E-180 T 14-09-2016 IPR001106 Aromatic amino acid lyase PAJ_RS03195 6f08c0504312d53dc2042b5b29bbb0f4 518 Gene3D G3DSA:1.20.200.10 202 507 2.2E-125 T 14-09-2016 PAJ_RS03195 6f08c0504312d53dc2042b5b29bbb0f4 518 PANTHER PTHR10362:SF7 6 495 2.2E-230 T 14-09-2016 PAJ_RS03195 6f08c0504312d53dc2042b5b29bbb0f4 518 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 11 505 1.9E-205 T 14-09-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PAJ_RS03195 6f08c0504312d53dc2042b5b29bbb0f4 518 Gene3D G3DSA:1.10.275.10 5 201 1.6E-68 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal PAJ_RS03195 6f08c0504312d53dc2042b5b29bbb0f4 518 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 7 507 43.378 T 14-09-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PAJ_RS03195 6f08c0504312d53dc2042b5b29bbb0f4 518 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 143 159 - T 14-09-2016 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 PAJ_RS16385 1e5a16f86a4f0a8339708d6fc6a33046 119 Pfam PF10694 Protein of unknown function (DUF2500) 5 115 4.4E-33 T 14-09-2016 IPR019635 Protein of unknown function DUF2500 PAJ_RS20830 bf6db2767e81d1e81e4955b293f9e77e 517 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 97 436 2.3E-62 T 14-09-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 PAJ_RS20830 bf6db2767e81d1e81e4955b293f9e77e 517 PANTHER PTHR11999 43 510 3.2E-203 T 14-09-2016 PAJ_RS20830 bf6db2767e81d1e81e4955b293f9e77e 517 SUPERFAMILY SSF53383 35 503 1.15E-119 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS20830 bf6db2767e81d1e81e4955b293f9e77e 517 Gene3D G3DSA:3.90.1150.10 390 505 3.5E-38 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS20830 bf6db2767e81d1e81e4955b293f9e77e 517 Gene3D G3DSA:1.20.1650.10 15 100 9.3E-23 T 14-09-2016 PAJ_RS20830 bf6db2767e81d1e81e4955b293f9e77e 517 Gene3D G3DSA:3.40.640.10 111 389 1.9E-95 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS20830 bf6db2767e81d1e81e4955b293f9e77e 517 PANTHER PTHR11999:SF106 43 510 3.2E-203 T 14-09-2016 PAJ_RS03895 5e4245e2fd1f0f1032043bf076183103 218 PANTHER PTHR23291:SF37 8 213 1.2E-103 T 14-09-2016 PAJ_RS03895 5e4245e2fd1f0f1032043bf076183103 218 ProSitePatterns PS01243 Bax inhibitor-1 family signature. 86 116 - T 14-09-2016 IPR006213 Bax inhibitor 1, conserved site GO:0016021|GO:0043066 PAJ_RS03895 5e4245e2fd1f0f1032043bf076183103 218 PANTHER PTHR23291 8 213 1.2E-103 T 14-09-2016 IPR006214 Bax inhibitor 1-related PAJ_RS03895 5e4245e2fd1f0f1032043bf076183103 218 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 18 212 1.2E-39 T 14-09-2016 PAJ_RS03780 b34fed6b904a30793db3dbcfbcba9952 180 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 178 39.596 T 14-09-2016 IPR009809 Cell division protein ZapC PAJ_RS03780 b34fed6b904a30793db3dbcfbcba9952 180 PIRSF PIRSF010252 1 179 5.2E-62 T 14-09-2016 IPR009809 Cell division protein ZapC PAJ_RS03780 b34fed6b904a30793db3dbcfbcba9952 180 Pfam PF07126 Cell-division protein ZapC 2 170 1.6E-73 T 14-09-2016 IPR009809 Cell division protein ZapC PAJ_RS05860 3d273475055201bb9c2fc82c5f9454ad 124 Gene3D G3DSA:2.60.300.12 19 112 9.0E-28 T 14-09-2016 IPR000361 FeS cluster biogenesis PAJ_RS05860 3d273475055201bb9c2fc82c5f9454ad 124 PANTHER PTHR10072 1 124 6.3E-67 T 14-09-2016 PAJ_RS05860 3d273475055201bb9c2fc82c5f9454ad 124 Pfam PF01521 Iron-sulphur cluster biosynthesis 19 119 2.8E-18 T 14-09-2016 IPR000361 FeS cluster biogenesis PAJ_RS05860 3d273475055201bb9c2fc82c5f9454ad 124 SUPERFAMILY SSF89360 19 112 3.53E-27 T 14-09-2016 IPR000361 FeS cluster biogenesis PAJ_RS05860 3d273475055201bb9c2fc82c5f9454ad 124 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 104 121 - T 14-09-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site PAJ_RS05860 3d273475055201bb9c2fc82c5f9454ad 124 TIGRFAM TIGR01997 sufA_proteo: FeS assembly scaffold SufA 18 123 1.7E-41 T 14-09-2016 IPR011298 FeS assembly scaffold SufA GO:0016226 PAJ_RS05860 3d273475055201bb9c2fc82c5f9454ad 124 PANTHER PTHR10072:SF47 1 124 6.3E-67 T 14-09-2016 PAJ_RS05860 3d273475055201bb9c2fc82c5f9454ad 124 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 19 122 2.8E-32 T 14-09-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 318 50.892 T 14-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 SUPERFAMILY SSF52096 5 317 1.91E-104 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 115 133 4.3E-50 T 14-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 90 101 4.3E-50 T 14-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 199 208 4.3E-50 T 14-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 171 184 4.3E-50 T 14-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 136 152 4.3E-50 T 14-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 155 168 4.3E-50 T 14-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 PANTHER PTHR22855 1 316 2.8E-133 T 14-09-2016 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 150 4.0E-62 T 14-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 1 318 1.2E-170 T 14-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PAJ_RS00770 1d3528e3b73f41741b6e939e858456c1 318 Gene3D G3DSA:3.90.226.10 58 274 1.1E-48 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS02670 bd1417929423c691490e91b7d46e9a1a 310 Gene3D G3DSA:2.40.100.10 177 295 1.2E-4 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS02670 bd1417929423c691490e91b7d46e9a1a 310 SUPERFAMILY SSF50891 173 288 2.69E-10 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS02670 bd1417929423c691490e91b7d46e9a1a 310 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 310 1.4E-117 T 14-09-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PAJ_RS02670 bd1417929423c691490e91b7d46e9a1a 310 PANTHER PTHR18866 139 261 1.9E-37 T 14-09-2016 PAJ_RS02670 bd1417929423c691490e91b7d46e9a1a 310 SMART SM00797 23 298 4.6E-143 T 14-09-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PAJ_RS02670 bd1417929423c691490e91b7d46e9a1a 310 Pfam PF02626 Allophanate hydrolase subunit 2 24 280 5.6E-92 T 14-09-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PAJ_RS12780 9e53a58f6712ac632ca205f75dc833dc 164 SUPERFAMILY SSF142433 5 161 3.53E-58 T 14-09-2016 IPR008136 CinA, C-terminal PAJ_RS12780 9e53a58f6712ac632ca205f75dc833dc 164 PANTHER PTHR13939 1 161 5.5E-76 T 14-09-2016 PAJ_RS12780 9e53a58f6712ac632ca205f75dc833dc 164 Pfam PF02464 Competence-damaged protein 8 159 1.3E-59 T 14-09-2016 IPR008136 CinA, C-terminal PAJ_RS12780 9e53a58f6712ac632ca205f75dc833dc 164 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 160 5.7E-59 T 14-09-2016 IPR008136 CinA, C-terminal PAJ_RS12780 9e53a58f6712ac632ca205f75dc833dc 164 Gene3D G3DSA:3.90.950.20 4 162 3.0E-62 T 14-09-2016 IPR008136 CinA, C-terminal PAJ_RS11855 2b12f74614c2a999525a436995ff281d 205 SUPERFAMILY SSF48452 88 187 6.9E-7 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS11855 2b12f74614c2a999525a436995ff281d 205 PANTHER PTHR38035 2 205 6.9E-75 T 14-09-2016 PAJ_RS11855 2b12f74614c2a999525a436995ff281d 205 PIRSF PIRSF006170 1 205 6.0E-58 T 14-09-2016 IPR026039 Uncharacterised protein family UPF0070 PAJ_RS11855 2b12f74614c2a999525a436995ff281d 205 Gene3D G3DSA:1.25.40.10 85 186 4.1E-7 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS11855 2b12f74614c2a999525a436995ff281d 205 Pfam PF09976 Tetratricopeptide repeat-like domain 15 205 3.6E-55 T 14-09-2016 IPR018704 Tetratricopeptide repeat-like domain PAJ_RS20325 ecc112c697383bd66b0d748b6bf5a30f 461 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 62 392 9.1E-45 T 14-09-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 PAJ_RS20325 ecc112c697383bd66b0d748b6bf5a30f 461 PANTHER PTHR11751:SF283 45 293 7.0E-18 T 14-09-2016 PAJ_RS20325 ecc112c697383bd66b0d748b6bf5a30f 461 Gene3D G3DSA:3.40.640.10 12 304 8.5E-64 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS20325 ecc112c697383bd66b0d748b6bf5a30f 461 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 414 442 3.2E-5 T 14-09-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PAJ_RS20325 ecc112c697383bd66b0d748b6bf5a30f 461 SUPERFAMILY SSF53383 63 407 2.97E-50 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS20325 ecc112c697383bd66b0d748b6bf5a30f 461 PANTHER PTHR11751 45 293 7.0E-18 T 14-09-2016 PAJ_RS20325 ecc112c697383bd66b0d748b6bf5a30f 461 Gene3D G3DSA:3.90.100.10 413 455 2.8E-11 T 14-09-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PAJ_RS10205 97b15d8dde4e6e3e97baf8b5c3ac78bb 488 ProSitePatterns PS00218 Amino acid permeases signature. 46 77 - T 14-09-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PAJ_RS10205 97b15d8dde4e6e3e97baf8b5c3ac78bb 488 Pfam PF00324 Amino acid permease 21 469 4.4E-142 T 14-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PAJ_RS10205 97b15d8dde4e6e3e97baf8b5c3ac78bb 488 PANTHER PTHR11785:SF204 6 488 6.3E-221 T 14-09-2016 PAJ_RS10205 97b15d8dde4e6e3e97baf8b5c3ac78bb 488 PANTHER PTHR11785 6 488 6.3E-221 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS10205 97b15d8dde4e6e3e97baf8b5c3ac78bb 488 PIRSF PIRSF006060 1 481 1.6E-78 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS03225 925810cfe3b311c0f66e5db802b2da78 282 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 277 3.5E-56 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS03225 925810cfe3b311c0f66e5db802b2da78 282 SUPERFAMILY SSF53850 11 279 1.5E-56 T 14-09-2016 PAJ_RS03225 925810cfe3b311c0f66e5db802b2da78 282 Gene3D G3DSA:3.40.190.10 168 235 1.9E-18 T 14-09-2016 PAJ_RS03225 925810cfe3b311c0f66e5db802b2da78 282 Gene3D G3DSA:3.40.190.10 29 167 1.4E-44 T 14-09-2016 PAJ_RS03225 925810cfe3b311c0f66e5db802b2da78 282 PANTHER PTHR18966 25 276 4.4E-41 T 14-09-2016 PAJ_RS03225 925810cfe3b311c0f66e5db802b2da78 282 SMART SM00062 33 279 1.4E-51 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS03225 925810cfe3b311c0f66e5db802b2da78 282 PANTHER PTHR18966:SF152 25 276 4.4E-41 T 14-09-2016 PAJ_RS10105 8ae79cc405daea8852876809081752d1 151 Gene3D G3DSA:3.40.630.30 2 136 1.1E-28 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS10105 8ae79cc405daea8852876809081752d1 151 PANTHER PTHR23091 1 136 1.5E-14 T 14-09-2016 PAJ_RS10105 8ae79cc405daea8852876809081752d1 151 SUPERFAMILY SSF55729 2 136 2.87E-28 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS10105 8ae79cc405daea8852876809081752d1 151 Pfam PF13508 Acetyltransferase (GNAT) domain 45 121 2.8E-14 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 220 251 - T 14-09-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 19 115 1.7E-22 T 14-09-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 SMART SM00922 133 270 7.1E-14 T 14-09-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 PANTHER PTHR13794:SF61 6 153 9.3E-121 T 14-09-2016 PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 SUPERFAMILY SSF54826 6 120 3.21E-28 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 Gene3D G3DSA:3.30.390.10 6 124 7.1E-43 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 PANTHER PTHR13794:SF61 194 416 9.3E-121 T 14-09-2016 PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 PANTHER PTHR13794 6 153 9.3E-121 T 14-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 SUPERFAMILY SSF51604 103 399 6.06E-69 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 90 115 - T 14-09-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 Gene3D G3DSA:3.20.20.120 125 379 4.2E-74 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 Pfam PF13378 Enolase C-terminal domain-like 206 390 3.3E-42 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS20600 507689c45eed21335b35e09f5bc00239 417 PANTHER PTHR13794 194 416 9.3E-121 T 14-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PAJ_RS07920 de6d51e45db2c97c37c861354c392bb6 202 SUPERFAMILY SSF52499 2 202 5.89E-51 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS07920 de6d51e45db2c97c37c861354c392bb6 202 Gene3D G3DSA:3.40.50.850 1 202 1.3E-60 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS07920 de6d51e45db2c97c37c861354c392bb6 202 PANTHER PTHR11080 1 202 6.9E-59 T 14-09-2016 PAJ_RS07920 de6d51e45db2c97c37c861354c392bb6 202 Pfam PF00857 Isochorismatase family 4 201 7.1E-33 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS07920 de6d51e45db2c97c37c861354c392bb6 202 PANTHER PTHR11080:SF2 1 202 6.9E-59 T 14-09-2016 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 PANTHER PTHR11739 39 423 2.6E-203 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 Pfam PF00285 Citrate synthase, C-terminal domain 46 410 9.3E-132 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 14-09-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 Gene3D G3DSA:1.10.230.10 281 373 1.0E-42 T 14-09-2016 IPR016143 Citrate synthase-like, small alpha subdomain PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 PRINTS PR00143 Citrate synthase signature 165 178 5.1E-56 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 PRINTS PR00143 Citrate synthase signature 359 375 5.1E-56 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 PRINTS PR00143 Citrate synthase signature 219 234 5.1E-56 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 PRINTS PR00143 Citrate synthase signature 241 269 5.1E-56 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 PRINTS PR00143 Citrate synthase signature 379 393 5.1E-56 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 PRINTS PR00143 Citrate synthase signature 296 316 5.1E-56 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 14 421 1.6E-240 T 14-09-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 SUPERFAMILY SSF48256 4 423 1.7E-168 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 PIRSF PIRSF001369 38 427 4.5E-175 T 14-09-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 PAJ_RS02705 7d46796c4e041afe84d573f173b19efe 427 Gene3D G3DSA:1.10.580.10 52 280 1.2E-96 T 14-09-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 PAJ_RS13750 63c272ebd5110df76a52bbc196bf6d8e 401 Gene3D G3DSA:1.20.1250.20 27 206 5.1E-25 T 14-09-2016 PAJ_RS13750 63c272ebd5110df76a52bbc196bf6d8e 401 PANTHER PTHR23501 22 397 2.8E-111 T 14-09-2016 PAJ_RS13750 63c272ebd5110df76a52bbc196bf6d8e 401 Gene3D G3DSA:1.20.1250.20 234 396 2.9E-10 T 14-09-2016 PAJ_RS13750 63c272ebd5110df76a52bbc196bf6d8e 401 SUPERFAMILY SSF103473 27 397 3.92E-48 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS13750 63c272ebd5110df76a52bbc196bf6d8e 401 PANTHER PTHR23501:SF79 22 397 2.8E-111 T 14-09-2016 PAJ_RS13750 63c272ebd5110df76a52bbc196bf6d8e 401 Pfam PF07690 Major Facilitator Superfamily 34 337 2.5E-26 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS16760 6452fdd4ce32afdaaf3e386dbd944eef 315 Gene3D G3DSA:3.40.50.1820 68 307 1.2E-42 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS16760 6452fdd4ce32afdaaf3e386dbd944eef 315 SUPERFAMILY SSF53474 60 307 4.4E-43 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS16760 6452fdd4ce32afdaaf3e386dbd944eef 315 Pfam PF08386 TAP-like protein 248 289 6.3E-5 T 14-09-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal PAJ_RS16760 6452fdd4ce32afdaaf3e386dbd944eef 315 Pfam PF00561 alpha/beta hydrolase fold 85 187 2.7E-14 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS16760 6452fdd4ce32afdaaf3e386dbd944eef 315 PANTHER PTHR10992 66 307 4.6E-32 T 14-09-2016 PAJ_RS16760 6452fdd4ce32afdaaf3e386dbd944eef 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 124 7.1E-7 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS16760 6452fdd4ce32afdaaf3e386dbd944eef 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 155 168 7.1E-7 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS16760 6452fdd4ce32afdaaf3e386dbd944eef 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 169 182 7.1E-7 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS17355 308acf6aec0980da6f013593a52bb1cb 355 SUPERFAMILY SSF56112 6 255 3.64E-58 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS17355 308acf6aec0980da6f013593a52bb1cb 355 Gene3D G3DSA:1.10.510.10 114 256 9.8E-37 T 14-09-2016 PAJ_RS17355 308acf6aec0980da6f013593a52bb1cb 355 Gene3D G3DSA:3.30.200.20 7 113 3.0E-22 T 14-09-2016 PAJ_RS17355 308acf6aec0980da6f013593a52bb1cb 355 SMART SM00220 9 253 1.3E-41 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 PAJ_RS17355 308acf6aec0980da6f013593a52bb1cb 355 PANTHER PTHR24362 16 259 8.0E-52 T 14-09-2016 PAJ_RS17355 308acf6aec0980da6f013593a52bb1cb 355 Pfam PF00069 Protein kinase domain 17 250 3.1E-46 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 Hamap MF_01183 Chaperone SurA [surA]. 9 428 34.364 T 14-09-2016 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 Pfam PF00639 PPIC-type PPIASE domain 289 380 3.2E-27 T 14-09-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 SUPERFAMILY SSF109998 25 201 9.61E-42 T 14-09-2016 IPR027304 Trigger factor/SurA domain PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 Pfam PF09312 SurA N-terminal domain 25 142 5.6E-43 T 14-09-2016 IPR015391 SurA N-terminal PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 SUPERFAMILY SSF54534 283 385 2.75E-34 T 14-09-2016 PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 PANTHER PTHR10657:SF15 1 430 8.1E-160 T 14-09-2016 PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 Gene3D G3DSA:3.10.50.40 166 277 2.2E-33 T 14-09-2016 PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 Gene3D G3DSA:3.10.50.40 280 406 1.4E-38 T 14-09-2016 PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 321 342 - T 14-09-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 SUPERFAMILY SSF54534 173 275 1.11E-28 T 14-09-2016 PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 Pfam PF13616 PPIC-type PPIASE domain 166 272 6.2E-20 T 14-09-2016 PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 PANTHER PTHR10657 1 430 8.1E-160 T 14-09-2016 PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 212 232 - T 14-09-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site PAJ_RS00155 e5c19705f3560e929f7e90482541638e 431 Gene3D G3DSA:1.10.3120.10 37 115 1.8E-5 T 14-09-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 PANTHER PTHR11689 13 557 1.3E-52 T 14-09-2016 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 SUPERFAMILY SSF54631 446 557 7.96E-15 T 14-09-2016 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 Pfam PF00654 Voltage gated chloride channel 67 408 2.7E-66 T 14-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 Gene3D G3DSA:3.10.580.10 446 556 3.2E-13 T 14-09-2016 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 PANTHER PTHR11689:SF14 13 557 1.3E-52 T 14-09-2016 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 SUPERFAMILY SSF81340 9 425 5.36E-80 T 14-09-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 Gene3D G3DSA:1.10.3080.10 9 420 1.2E-69 T 14-09-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 PRINTS PR00762 Chloride channel signature 110 129 1.5E-21 T 14-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 PRINTS PR00762 Chloride channel signature 162 181 1.5E-21 T 14-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 PRINTS PR00762 Chloride channel signature 325 345 1.5E-21 T 14-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 PRINTS PR00762 Chloride channel signature 359 375 1.5E-21 T 14-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 PAJ_RS14960 28a8ebd10441999ea4cc2f0d9a7093c3 562 PRINTS PR00762 Chloride channel signature 377 396 1.5E-21 T 14-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 PAJ_RS10450 a041e5c33484177d4754322a95f4340f 550 PANTHER PTHR24220:SF425 324 529 6.5E-109 T 14-09-2016 PAJ_RS10450 a041e5c33484177d4754322a95f4340f 550 SUPERFAMILY SSF52540 322 530 1.89E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10450 a041e5c33484177d4754322a95f4340f 550 PANTHER PTHR24220 324 529 6.5E-109 T 14-09-2016 PAJ_RS10450 a041e5c33484177d4754322a95f4340f 550 Pfam PF00005 ABC transporter 341 477 1.6E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10450 a041e5c33484177d4754322a95f4340f 550 SMART SM00382 348 526 7.1E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10450 a041e5c33484177d4754322a95f4340f 550 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 3 527 1.1E-111 T 14-09-2016 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015197|GO:0015833|GO:0016021 PAJ_RS10450 a041e5c33484177d4754322a95f4340f 550 SUPERFAMILY SSF90123 10 299 1.27E-22 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS10450 a041e5c33484177d4754322a95f4340f 550 Gene3D G3DSA:1.20.1560.10 10 302 5.2E-16 T 14-09-2016 PAJ_RS10450 a041e5c33484177d4754322a95f4340f 550 Gene3D G3DSA:3.40.50.300 321 529 9.2E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10450 a041e5c33484177d4754322a95f4340f 550 ProSitePatterns PS00211 ABC transporters family signature. 450 464 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS11320 fb0fcdb93604b1017cda49a7ba4db6ef 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 300 4.6E-68 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS11320 fb0fcdb93604b1017cda49a7ba4db6ef 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 312 1.9E-142 T 14-09-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 PAJ_RS11320 fb0fcdb93604b1017cda49a7ba4db6ef 322 SUPERFAMILY SSF53686 3 317 5.24E-97 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS11320 fb0fcdb93604b1017cda49a7ba4db6ef 322 Gene3D G3DSA:3.40.50.1100 36 131 1.3E-37 T 14-09-2016 PAJ_RS11320 fb0fcdb93604b1017cda49a7ba4db6ef 322 PANTHER PTHR10314:SF110 3 318 1.1E-157 T 14-09-2016 PAJ_RS11320 fb0fcdb93604b1017cda49a7ba4db6ef 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 14-09-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 PAJ_RS11320 fb0fcdb93604b1017cda49a7ba4db6ef 322 Gene3D G3DSA:3.40.50.1100 132 314 2.8E-71 T 14-09-2016 PAJ_RS11320 fb0fcdb93604b1017cda49a7ba4db6ef 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 312 3.0E-134 T 14-09-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 PAJ_RS11320 fb0fcdb93604b1017cda49a7ba4db6ef 322 PANTHER PTHR10314 3 318 1.1E-157 T 14-09-2016 PAJ_RS15245 6aaff34f0c560bffcc47e74dee23c271 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.964 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS15245 6aaff34f0c560bffcc47e74dee23c271 176 Pfam PF00719 Inorganic pyrophosphatase 18 172 6.5E-54 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS15245 6aaff34f0c560bffcc47e74dee23c271 176 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS15245 6aaff34f0c560bffcc47e74dee23c271 176 PANTHER PTHR10286 6 175 1.3E-79 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS15245 6aaff34f0c560bffcc47e74dee23c271 176 SUPERFAMILY SSF50324 3 173 2.35E-67 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS15245 6aaff34f0c560bffcc47e74dee23c271 176 Gene3D G3DSA:3.90.80.10 4 175 1.4E-61 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 Gene3D G3DSA:3.40.50.720 2 167 8.4E-61 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 PANTHER PTHR32092:SF6 1 450 2.8E-278 T 14-09-2016 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 172 - T 14-09-2016 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 PANTHER PTHR32092 1 450 2.8E-278 T 14-09-2016 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 SUPERFAMILY SSF56327 171 448 7.02E-69 T 14-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 Gene3D G3DSA:3.90.110.10 170 448 1.2E-80 T 14-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 PRINTS PR00732 Glycosyl hydrolase family 4 signature 193 205 1.6E-40 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 PRINTS PR00732 Glycosyl hydrolase family 4 signature 74 90 1.6E-40 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 PRINTS PR00732 Glycosyl hydrolase family 4 signature 96 109 1.6E-40 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 1.6E-40 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 1.6E-40 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 1.6E-40 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 1.6E-40 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 Pfam PF02056 Family 4 glycosyl hydrolase 5 187 1.5E-76 T 14-09-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 SUPERFAMILY SSF51735 4 170 2.93E-51 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13540 5257a228b6c5729591c20ae086875517 450 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 198 420 5.0E-60 T 14-09-2016 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 PAJ_RS01115 aaf3f4171470f86f222557c62667c0ee 351 Gene3D G3DSA:3.30.70.270 66 164 2.0E-34 T 14-09-2016 PAJ_RS01115 aaf3f4171470f86f222557c62667c0ee 351 SUPERFAMILY SSF100879 241 349 1.18E-24 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS01115 aaf3f4171470f86f222557c62667c0ee 351 PANTHER PTHR11076:SF32 1 347 1.4E-212 T 14-09-2016 PAJ_RS01115 aaf3f4171470f86f222557c62667c0ee 351 Pfam PF00817 impB/mucB/samB family 7 154 6.4E-50 T 14-09-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS01115 aaf3f4171470f86f222557c62667c0ee 351 Hamap MF_01113 DNA polymerase IV [dinB]. 1 349 36.931 T 14-09-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS01115 aaf3f4171470f86f222557c62667c0ee 351 Gene3D G3DSA:1.10.150.20 165 237 2.6E-25 T 14-09-2016 PAJ_RS01115 aaf3f4171470f86f222557c62667c0ee 351 Pfam PF11799 impB/mucB/samB family C-terminal domain 237 341 8.0E-7 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS01115 aaf3f4171470f86f222557c62667c0ee 351 SUPERFAMILY SSF56672 1 234 1.51E-92 T 14-09-2016 PAJ_RS01115 aaf3f4171470f86f222557c62667c0ee 351 PANTHER PTHR11076 1 347 1.4E-212 T 14-09-2016 PAJ_RS01115 aaf3f4171470f86f222557c62667c0ee 351 Gene3D G3DSA:3.30.1490.100 238 349 2.1E-40 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS14760 bbfc5cf66ac106bbdf1a5c12d1081eaa 169 SUPERFAMILY SSF53955 9 167 2.35E-50 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS14760 bbfc5cf66ac106bbdf1a5c12d1081eaa 169 PANTHER PTHR38107 2 169 2.2E-73 T 14-09-2016 PAJ_RS14760 bbfc5cf66ac106bbdf1a5c12d1081eaa 169 PANTHER PTHR38107:SF1 2 169 2.2E-73 T 14-09-2016 PAJ_RS14760 bbfc5cf66ac106bbdf1a5c12d1081eaa 169 Pfam PF00959 Phage lysozyme 53 159 4.3E-16 T 14-09-2016 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 PAJ_RS14760 bbfc5cf66ac106bbdf1a5c12d1081eaa 169 Gene3D G3DSA:1.10.530.40 28 168 5.1E-51 T 14-09-2016 IPR023347 Lysozyme domain GO:0003796 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 10 32 3.5E-23 T 14-09-2016 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 3.5E-23 T 14-09-2016 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 3.5E-23 T 14-09-2016 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 3.5E-23 T 14-09-2016 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 SUPERFAMILY SSF51905 272 355 2.27E-55 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 SUPERFAMILY SSF51905 10 180 2.27E-55 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 PANTHER PTHR13789 7 394 2.7E-124 T 14-09-2016 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 Gene3D G3DSA:3.50.50.60 273 341 1.1E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 Gene3D G3DSA:3.50.50.60 10 185 1.1E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 Pfam PF01494 FAD binding domain 10 322 2.0E-48 T 14-09-2016 IPR002938 FAD-binding domain GO:0071949 PAJ_RS04775 ba9638951af82bf0d83f9f88a20c1867 400 PANTHER PTHR13789:SF209 7 394 2.7E-124 T 14-09-2016 PAJ_RS12945 61451c72cd340f47e3e82d7d9c6dc65d 119 Gene3D G3DSA:3.30.479.10 2 118 9.3E-40 T 14-09-2016 PAJ_RS12945 61451c72cd340f47e3e82d7d9c6dc65d 119 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 5 96 3.1E-33 T 14-09-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein PAJ_RS12945 61451c72cd340f47e3e82d7d9c6dc65d 119 PIRSF PIRSF006113 1 119 1.3E-53 T 14-09-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein PAJ_RS12945 61451c72cd340f47e3e82d7d9c6dc65d 119 PANTHER PTHR12589 5 119 1.3E-49 T 14-09-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein PAJ_RS12945 61451c72cd340f47e3e82d7d9c6dc65d 119 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 5 118 2.9E-34 T 14-09-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein PAJ_RS12945 61451c72cd340f47e3e82d7d9c6dc65d 119 SUPERFAMILY SSF55620 3 119 1.45E-40 T 14-09-2016 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 Pfam PF00303 Thymidylate synthase 2 264 1.5E-124 T 14-09-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 1.2E-41 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 6.6E-95 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 Gene3D G3DSA:3.30.572.10 1 264 3.1E-136 T 14-09-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 PANTHER PTHR11548 1 264 5.6E-198 T 14-09-2016 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 SUPERFAMILY SSF55831 1 264 1.02E-132 T 14-09-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 14-09-2016 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 46.55 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 1.9E-47 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 1.9E-47 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 1.9E-47 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 1.9E-47 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS13185 b45fa0325b621ddf459833ad9ee81162 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 1.9E-47 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 Pfam PF13721 SecD export protein N-terminal TM region 1 92 1.9E-31 T 14-09-2016 IPR027398 SecD export protein N-terminal TM domain PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 PANTHER PTHR30081 1 162 1.4E-224 T 14-09-2016 PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 603 46.977 T 14-09-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 PANTHER PTHR30081 302 602 1.4E-224 T 14-09-2016 PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 PANTHER PTHR30081 213 271 1.4E-224 T 14-09-2016 PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 SUPERFAMILY SSF82866 399 595 1.31E-40 T 14-09-2016 PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 Pfam PF02355 Protein export membrane protein 422 591 8.3E-17 T 14-09-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 Gene3D G3DSA:1.20.1640.10 429 600 1.6E-25 T 14-09-2016 PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 Pfam PF07549 SecD/SecF GG Motif 104 129 1.7E-7 T 14-09-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 334 583 5.8E-85 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 112 590 7.1E-152 T 14-09-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 PANTHER PTHR30081:SF1 1 162 1.4E-224 T 14-09-2016 PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 PANTHER PTHR30081:SF1 302 602 1.4E-224 T 14-09-2016 PAJ_RS01565 6f4290517c2fbb2e2e8dc0870fbacead 604 PANTHER PTHR30081:SF1 213 271 1.4E-224 T 14-09-2016 PAJ_RS13610 ce784edb5dffe7930b5f73b941f3e3e0 470 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 437 5.1E-165 T 14-09-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 PAJ_RS13610 ce784edb5dffe7930b5f73b941f3e3e0 470 PANTHER PTHR30365:SF8 1 456 2.5E-282 T 14-09-2016 PAJ_RS13610 ce784edb5dffe7930b5f73b941f3e3e0 470 PANTHER PTHR30365 1 456 2.5E-282 T 14-09-2016 PAJ_RS13610 ce784edb5dffe7930b5f73b941f3e3e0 470 PIRSF PIRSF006446 2 462 5.2E-224 T 14-09-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 Gene3D G3DSA:1.10.287.610 100 152 8.2E-27 T 14-09-2016 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 14-09-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 SUPERFAMILY SSF52313 6 235 4.19E-95 T 14-09-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 41.066 T 14-09-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 1.8E-106 T 14-09-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 PRINTS PR00395 Ribosomal protein S2 signature 196 210 1.3E-36 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 PRINTS PR00395 Ribosomal protein S2 signature 37 46 1.3E-36 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 PRINTS PR00395 Ribosomal protein S2 signature 158 175 1.3E-36 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 PRINTS PR00395 Ribosomal protein S2 signature 6 24 1.3E-36 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 PRINTS PR00395 Ribosomal protein S2 signature 175 186 1.3E-36 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 PRINTS PR00395 Ribosomal protein S2 signature 87 104 1.3E-36 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 Pfam PF00318 Ribosomal protein S2 9 224 2.9E-93 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 Gene3D G3DSA:3.40.50.10490 158 236 3.4E-67 T 14-09-2016 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 Gene3D G3DSA:3.40.50.10490 23 99 3.4E-67 T 14-09-2016 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 14-09-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 PAJ_RS00690 54064d195f7ce1428241399563abe23a 241 PANTHER PTHR12534 1 236 1.0E-122 T 14-09-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PANTHER PTHR23083 119 131 2.0E-18 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PRINTS PR01441 Cellulose synthase subunit C signature 488 508 7.2E-29 T 14-09-2016 IPR003921 Cellulose synthase, subunit C GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PRINTS PR01441 Cellulose synthase subunit C signature 154 166 7.2E-29 T 14-09-2016 IPR003921 Cellulose synthase, subunit C GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PRINTS PR01441 Cellulose synthase subunit C signature 1170 1191 7.2E-29 T 14-09-2016 IPR003921 Cellulose synthase, subunit C GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PRINTS PR01441 Cellulose synthase subunit C signature 403 423 7.2E-29 T 14-09-2016 IPR003921 Cellulose synthase, subunit C GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PRINTS PR01441 Cellulose synthase subunit C signature 1130 1154 7.2E-29 T 14-09-2016 IPR003921 Cellulose synthase, subunit C GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PRINTS PR01441 Cellulose synthase subunit C signature 44 64 7.2E-29 T 14-09-2016 IPR003921 Cellulose synthase, subunit C GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PRINTS PR01441 Cellulose synthase subunit C signature 184 201 7.2E-29 T 14-09-2016 IPR003921 Cellulose synthase, subunit C GO:0006011|GO:0016020 UniPathway: UPA00694 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PANTHER PTHR23083:SF195 278 332 2.0E-18 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PANTHER PTHR23083:SF195 380 521 2.0E-18 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PANTHER PTHR23083:SF195 119 131 2.0E-18 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PANTHER PTHR23083 278 332 2.0E-18 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PANTHER PTHR23083 380 521 2.0E-18 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SUPERFAMILY SSF48452 270 334 2.96E-18 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SUPERFAMILY SSF48452 382 513 2.96E-18 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 Pfam PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) 915 1265 7.6E-133 T 14-09-2016 IPR008410 Cellulose synthase operon C, C-terminal GO:0019867|GO:0030244 UniPathway: UPA00694 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PANTHER PTHR23083:SF195 676 804 2.0E-18 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 Pfam PF14559 Tetratricopeptide repeat 466 529 1.0E-7 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 Pfam PF14559 Tetratricopeptide repeat 392 446 3.3E-6 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PANTHER PTHR23083 26 103 2.0E-18 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 Gene3D G3DSA:2.40.160.20 1122 1253 8.6E-4 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PANTHER PTHR23083 676 804 2.0E-18 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 Gene3D G3DSA:1.25.40.10 279 433 8.4E-17 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SMART SM00028 380 413 12.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SMART SM00028 265 298 160.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SMART SM00028 299 332 0.18 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SMART SM00028 36 69 52.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SMART SM00028 455 488 290.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SMART SM00028 70 103 120.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 Gene3D G3DSA:1.25.40.10 30 203 1.3E-7 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 PANTHER PTHR23083:SF195 26 103 2.0E-18 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SUPERFAMILY SSF48452 36 202 2.55E-8 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SUPERFAMILY SSF48452 562 625 7.82E-5 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 SUPERFAMILY SSF48452 460 518 7.82E-5 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 Pfam PF13432 Tetratricopeptide repeat 274 329 1.1E-5 T 14-09-2016 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 Gene3D G3DSA:1.25.40.10 686 803 7.3E-7 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 Gene3D G3DSA:1.25.40.10 562 622 1.4E-6 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS18190 2ba2edfe0035503e54a46ccc39f65b56 1268 Gene3D G3DSA:1.25.40.10 460 518 1.4E-6 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS10895 51f3760e023cc6ee4671009bd047eac0 361 Pfam PF01264 Chorismate synthase 10 345 1.1E-142 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS10895 51f3760e023cc6ee4671009bd047eac0 361 SUPERFAMILY SSF103263 4 351 1.96E-148 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS10895 51f3760e023cc6ee4671009bd047eac0 361 PANTHER PTHR21085 2 352 1.3E-221 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS10895 51f3760e023cc6ee4671009bd047eac0 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 2.6E-140 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS10895 51f3760e023cc6ee4671009bd047eac0 361 Gene3D G3DSA:3.60.150.10 10 352 7.0E-160 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS10895 51f3760e023cc6ee4671009bd047eac0 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 14-09-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS10895 51f3760e023cc6ee4671009bd047eac0 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 354 37.497 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS10895 51f3760e023cc6ee4671009bd047eac0 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 14-09-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS10895 51f3760e023cc6ee4671009bd047eac0 361 PIRSF PIRSF001456 3 359 4.2E-143 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS10895 51f3760e023cc6ee4671009bd047eac0 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 14-09-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 SMART SM00387 360 470 1.0E-22 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 411 4.1E-8 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 425 4.1E-8 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 450 4.1E-8 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 SUPERFAMILY SSF55874 320 468 7.2E-31 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 PANTHER PTHR24423 1 11 1.6E-185 T 14-09-2016 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 PANTHER PTHR24423 189 472 1.6E-185 T 14-09-2016 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 313 3.7E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 364 469 7.6E-16 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 Gene3D G3DSA:1.10.287.130 241 313 6.9E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 PANTHER PTHR24423:SF473 189 472 1.6E-185 T 14-09-2016 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 PANTHER PTHR24423:SF473 1 11 1.6E-185 T 14-09-2016 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 SMART SM00388 249 317 1.2E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 Gene3D G3DSA:3.30.565.10 320 469 1.4E-31 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11985 36fb53411f1acde0ce01ec8f2ab598c9 475 SUPERFAMILY SSF47384 234 313 4.51E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS09585 470d52f3e400467dead87c8ddaca536c 61 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 3 52 4.3E-9 T 14-09-2016 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 Hamap MF_01151 Protein GrpE [grpE]. 3 190 21.946 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 Gene3D G3DSA:2.30.22.10 134 192 1.4E-26 T 14-09-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 ProSitePatterns PS01071 grpE protein signature. 145 188 - T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 SUPERFAMILY SSF58014 34 134 8.89E-27 T 14-09-2016 PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 SUPERFAMILY SSF51064 135 191 2.22E-19 T 14-09-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 Pfam PF01025 GrpE 32 190 6.1E-50 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 Gene3D G3DSA:3.90.20.20 32 133 4.8E-31 T 14-09-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 PRINTS PR00773 GrpE protein signature 169 188 1.8E-27 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 PRINTS PR00773 GrpE protein signature 87 102 1.8E-27 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 PRINTS PR00773 GrpE protein signature 142 157 1.8E-27 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 PRINTS PR00773 GrpE protein signature 59 75 1.8E-27 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PAJ_RS12100 cf8527072ca7c51c86b9db21f5c72f7e 193 PANTHER PTHR21237 20 193 2.3E-61 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 15 205 3.1E-111 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 Pfam PF00574 Clp protease 25 205 1.4E-90 T 14-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 Gene3D G3DSA:3.90.226.10 16 206 3.1E-92 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 SUPERFAMILY SSF52096 23 206 5.9E-76 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 44.9 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 14-09-2016 IPR018215 ClpP, Ser active site PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 PANTHER PTHR10381 2 207 2.7E-143 T 14-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 5.8E-54 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 5.8E-54 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 5.8E-54 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 5.8E-54 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 5.8E-54 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 14-09-2016 IPR033135 ClpP, histidine active site PAJ_RS01715 201e3c41f93b9587fb1d49b7cc5c04a6 207 PANTHER PTHR10381:SF22 2 207 2.7E-143 T 14-09-2016 PAJ_RS03715 626ffc64880572bd97a8562a927e95c3 396 PANTHER PTHR11879 1 395 2.0E-268 T 14-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PAJ_RS03715 626ffc64880572bd97a8562a927e95c3 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 14-09-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 PAJ_RS03715 626ffc64880572bd97a8562a927e95c3 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 2.7E-39 T 14-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PAJ_RS03715 626ffc64880572bd97a8562a927e95c3 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 2.7E-39 T 14-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PAJ_RS03715 626ffc64880572bd97a8562a927e95c3 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 2.7E-39 T 14-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PAJ_RS03715 626ffc64880572bd97a8562a927e95c3 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 2.7E-39 T 14-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PAJ_RS03715 626ffc64880572bd97a8562a927e95c3 396 SUPERFAMILY SSF53383 1 396 1.4E-117 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS03715 626ffc64880572bd97a8562a927e95c3 396 Gene3D G3DSA:3.40.640.10 45 315 2.8E-104 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS03715 626ffc64880572bd97a8562a927e95c3 396 Pfam PF00155 Aminotransferase class I and II 27 392 2.7E-89 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS03715 626ffc64880572bd97a8562a927e95c3 396 PANTHER PTHR11879:SF11 1 395 2.0E-268 T 14-09-2016 PAJ_RS13515 edc79bacb2ee40c45bf30d93a38449b7 458 Pfam PF03611 PTS system sugar-specific permease component 13 408 8.2E-143 T 14-09-2016 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 PAJ_RS13515 edc79bacb2ee40c45bf30d93a38449b7 458 PANTHER PTHR33843:SF4 1 457 2.3E-242 T 14-09-2016 PAJ_RS13515 edc79bacb2ee40c45bf30d93a38449b7 458 PANTHER PTHR33843 1 457 2.3E-242 T 14-09-2016 PAJ_RS03610 5df6cd0dfffcfd65f43cc6fd7a03857d 286 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 26 280 4.1E-92 T 14-09-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 PAJ_RS03610 5df6cd0dfffcfd65f43cc6fd7a03857d 286 Gene3D G3DSA:1.20.1080.10 30 280 1.0E-87 T 14-09-2016 IPR023271 Aquaporin-like PAJ_RS03610 5df6cd0dfffcfd65f43cc6fd7a03857d 286 PANTHER PTHR30520:SF4 1 228 6.2E-101 T 14-09-2016 PAJ_RS03610 5df6cd0dfffcfd65f43cc6fd7a03857d 286 PANTHER PTHR30520:SF4 245 281 6.2E-101 T 14-09-2016 PAJ_RS03610 5df6cd0dfffcfd65f43cc6fd7a03857d 286 Pfam PF01226 Formate/nitrite transporter 15 276 5.5E-74 T 14-09-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 PAJ_RS03610 5df6cd0dfffcfd65f43cc6fd7a03857d 286 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 83 92 - T 14-09-2016 IPR024002 Formate/nitrite transporter, conserved site PAJ_RS03610 5df6cd0dfffcfd65f43cc6fd7a03857d 286 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 168 178 - T 14-09-2016 IPR024002 Formate/nitrite transporter, conserved site PAJ_RS03610 5df6cd0dfffcfd65f43cc6fd7a03857d 286 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 14 279 1.3E-121 T 14-09-2016 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 PAJ_RS03610 5df6cd0dfffcfd65f43cc6fd7a03857d 286 PANTHER PTHR30520 1 228 6.2E-101 T 14-09-2016 PAJ_RS03610 5df6cd0dfffcfd65f43cc6fd7a03857d 286 PANTHER PTHR30520 245 281 6.2E-101 T 14-09-2016 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 Hamap MF_00109 Shikimate kinase [aroK]. 2 169 24.02 T 14-09-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 PANTHER PTHR21087:SF9 1 169 4.8E-72 T 14-09-2016 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 Pfam PF01202 Shikimate kinase 11 168 9.2E-44 T 14-09-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 PRINTS PR01100 Shikimate kinase family signature 57 65 6.9E-20 T 14-09-2016 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 PRINTS PR01100 Shikimate kinase family signature 95 112 6.9E-20 T 14-09-2016 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 PRINTS PR01100 Shikimate kinase family signature 29 42 6.9E-20 T 14-09-2016 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 PRINTS PR01100 Shikimate kinase family signature 5 20 6.9E-20 T 14-09-2016 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 PRINTS PR01100 Shikimate kinase family signature 74 83 6.9E-20 T 14-09-2016 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 ProSitePatterns PS01128 Shikimate kinase signature. 58 82 - T 14-09-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 Gene3D G3DSA:3.40.50.300 2 168 2.5E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 PANTHER PTHR21087 1 169 4.8E-72 T 14-09-2016 PAJ_RS01460 9a5bfa340d52dc46f2a012f58b6c84e2 174 SUPERFAMILY SSF52540 2 169 6.0E-23 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15560 2cbd2e6646a260759de9222e1648cbd3 334 Gene3D G3DSA:3.90.420.10 67 331 3.3E-75 T 14-09-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 PAJ_RS15560 2cbd2e6646a260759de9222e1648cbd3 334 PANTHER PTHR19372 6 329 7.0E-172 T 14-09-2016 PAJ_RS15560 2cbd2e6646a260759de9222e1648cbd3 334 SUPERFAMILY SSF56524 72 330 3.79E-92 T 14-09-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 PAJ_RS15560 2cbd2e6646a260759de9222e1648cbd3 334 Hamap MF_01206 Sulfoxide reductase catalytic subunit YedY [yedY]. 2 334 60.032 T 14-09-2016 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 PAJ_RS15560 2cbd2e6646a260759de9222e1648cbd3 334 PANTHER PTHR19372:SF1 6 329 7.0E-172 T 14-09-2016 PAJ_RS15560 2cbd2e6646a260759de9222e1648cbd3 334 Pfam PF00174 Oxidoreductase molybdopterin binding domain 108 267 8.0E-28 T 14-09-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 4 458 4.2E-94 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 ProSitePatterns PS00217 Sugar transport proteins signature 2. 112 137 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 ProSitePatterns PS00216 Sugar transport proteins signature 1. 317 334 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 Gene3D G3DSA:1.20.1250.20 20 210 2.3E-33 T 14-09-2016 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 Gene3D G3DSA:1.20.1250.20 264 460 1.9E-18 T 14-09-2016 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 PANTHER PTHR23500 12 467 2.4E-130 T 14-09-2016 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 ProSitePatterns PS00216 Sugar transport proteins signature 1. 70 86 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 SUPERFAMILY SSF103473 8 461 7.32E-72 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 Pfam PF00083 Sugar (and other) transporter 16 462 4.3E-97 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 PRINTS PR00171 Sugar transporter signature 107 126 6.7E-19 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 PRINTS PR00171 Sugar transporter signature 273 283 6.7E-19 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 PRINTS PR00171 Sugar transporter signature 24 34 6.7E-19 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 PRINTS PR00171 Sugar transporter signature 358 379 6.7E-19 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS05390 0d88b16280ccb1a11fab1d96a27c1ec6 481 PRINTS PR00171 Sugar transporter signature 381 393 6.7E-19 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PAJ_RS16440 1c47f22b05db847689e0c4dc88fbef43 272 SUPERFAMILY SSF51182 10 253 1.11E-67 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS16440 1c47f22b05db847689e0c4dc88fbef43 272 PANTHER PTHR39193 1 269 5.9E-122 T 14-09-2016 PAJ_RS16440 1c47f22b05db847689e0c4dc88fbef43 272 Gene3D G3DSA:2.60.120.10 122 267 2.3E-69 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS16440 1c47f22b05db847689e0c4dc88fbef43 272 Gene3D G3DSA:2.60.120.10 15 121 9.6E-42 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS16440 1c47f22b05db847689e0c4dc88fbef43 272 PANTHER PTHR39193:SF1 1 269 5.9E-122 T 14-09-2016 PAJ_RS16440 1c47f22b05db847689e0c4dc88fbef43 272 Pfam PF04962 KduI/IolB family 4 264 5.9E-107 T 14-09-2016 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 PAJ_RS16440 1c47f22b05db847689e0c4dc88fbef43 272 PIRSF PIRSF036628 1 270 4.4E-109 T 14-09-2016 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30|UniPathway: UPA00076 PAJ_RS16440 1c47f22b05db847689e0c4dc88fbef43 272 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 18 264 1.7E-97 T 14-09-2016 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30|UniPathway: UPA00076 PAJ_RS00360 b33da85ef46794c03d93c8b87aa6ddde 174 ProDom PD089227 MONITOR PERIPLASMIC SECRETION PRECURSOR SIGNAL YACA 9 169 2.0E-35 T 14-09-2016 IPR009502 Secretion monitor GO:0045182 PAJ_RS00360 b33da85ef46794c03d93c8b87aa6ddde 174 Pfam PF06558 Secretion monitor precursor protein (SecM) 30 170 2.0E-43 T 14-09-2016 IPR009502 Secretion monitor GO:0045182 PAJ_RS00360 b33da85ef46794c03d93c8b87aa6ddde 174 Hamap MF_01332 Secretion monitor [secM]. 7 173 30.39 T 14-09-2016 IPR009502 Secretion monitor GO:0045182 PAJ_RS19500 b57bc468db0ab2e166e7e5f6c7757e7c 320 PANTHER PTHR11732:SF132 4 317 8.8E-134 T 14-09-2016 PAJ_RS19500 b57bc468db0ab2e166e7e5f6c7757e7c 320 PANTHER PTHR11732 4 317 8.8E-134 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PAJ_RS19500 b57bc468db0ab2e166e7e5f6c7757e7c 320 Gene3D G3DSA:3.20.20.100 5 318 8.6E-96 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS19500 b57bc468db0ab2e166e7e5f6c7757e7c 320 SUPERFAMILY SSF51430 4 317 4.58E-93 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS19500 b57bc468db0ab2e166e7e5f6c7757e7c 320 Pfam PF00248 Aldo/keto reductase family 19 317 7.5E-71 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 Pfam PF13416 Bacterial extracellular solute-binding protein 46 333 1.3E-35 T 14-09-2016 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 SUPERFAMILY SSF53850 28 368 1.48E-105 T 14-09-2016 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 Gene3D G3DSA:3.40.190.10 150 318 6.2E-76 T 14-09-2016 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PANTHER PTHR30222 18 369 4.7E-175 T 14-09-2016 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 Gene3D G3DSA:3.40.190.10 45 149 1.4E-14 T 14-09-2016 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PIRSF PIRSF019574 1 369 3.5E-145 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PANTHER PTHR30222:SF11 18 369 4.7E-175 T 14-09-2016 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 126 142 2.2E-72 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 268 287 2.2E-72 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 313 339 2.2E-72 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 180 199 2.2E-72 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 34 50 2.2E-72 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 50 71 2.2E-72 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 77 91 2.2E-72 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 93 106 2.2E-72 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 157 171 2.2E-72 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS03440 1a616dffdfdd850fdb8ae8b9fed2c772 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 218 237 2.2E-72 T 14-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PAJ_RS06375 1be4765f2d9e173a723c4ae5862aa1f7 196 SUPERFAMILY SSF160904 7 190 3.27E-44 T 14-09-2016 PAJ_RS06375 1be4765f2d9e173a723c4ae5862aa1f7 196 PANTHER PTHR35525:SF3 9 195 2.3E-37 T 14-09-2016 PAJ_RS06375 1be4765f2d9e173a723c4ae5862aa1f7 196 Gene3D G3DSA:1.10.3300.10 8 192 5.6E-49 T 14-09-2016 IPR023286 ABATE domain PAJ_RS06375 1be4765f2d9e173a723c4ae5862aa1f7 196 PANTHER PTHR35525 9 195 2.3E-37 T 14-09-2016 PAJ_RS06375 1be4765f2d9e173a723c4ae5862aa1f7 196 Pfam PF07336 Putative stress-induced transcription regulator 16 143 2.7E-21 T 14-09-2016 IPR010852 Putative stress-induced transcription regulator PAJ_RS06375 1be4765f2d9e173a723c4ae5862aa1f7 196 Pfam PF11706 CGNR zinc finger 149 191 1.2E-18 T 14-09-2016 IPR021005 Zinc finger, CGNR PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 PANTHER PTHR11014 5 377 1.0E-147 T 14-09-2016 PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 PANTHER PTHR11014:SF107 5 377 1.0E-147 T 14-09-2016 PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 Gene3D G3DSA:3.30.70.360 173 289 3.1E-37 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 Gene3D G3DSA:3.40.630.10 6 170 2.6E-86 T 14-09-2016 PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 Gene3D G3DSA:3.40.630.10 290 374 2.6E-86 T 14-09-2016 PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 Pfam PF07687 Peptidase dimerisation domain 177 269 2.3E-10 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 SUPERFAMILY SSF53187 290 373 1.53E-75 T 14-09-2016 PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 SUPERFAMILY SSF53187 6 189 1.53E-75 T 14-09-2016 PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 Pfam PF01546 Peptidase family M20/M25/M40 65 368 1.6E-29 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 SUPERFAMILY SSF55031 175 286 2.22E-29 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 PIRSF PIRSF005962 1 376 1.1E-114 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 PAJ_RS14310 696a0d9ed5f9b6ee0a2de8bf8eafea39 388 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 9 359 3.7E-110 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 PAJ_RS11100 c5f5fbacf6159f6a00677ef199b69ce2 191 PANTHER PTHR33420 1 191 3.2E-36 T 14-09-2016 PAJ_RS11100 c5f5fbacf6159f6a00677ef199b69ce2 191 Gene3D G3DSA:2.60.40.1090 29 190 3.3E-40 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS11100 c5f5fbacf6159f6a00677ef199b69ce2 191 SUPERFAMILY SSF49401 30 191 9.94E-34 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS11100 c5f5fbacf6159f6a00677ef199b69ce2 191 PANTHER PTHR33420:SF7 1 191 3.2E-36 T 14-09-2016 PAJ_RS11100 c5f5fbacf6159f6a00677ef199b69ce2 191 Pfam PF00419 Fimbrial protein 32 190 3.2E-14 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS20795 99b2f6cc456a8338104289ee496df735 333 Gene3D G3DSA:3.40.50.720 152 251 2.4E-16 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20795 99b2f6cc456a8338104289ee496df735 333 SMART SM00829 8 331 3.7E-10 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PAJ_RS20795 99b2f6cc456a8338104289ee496df735 333 PANTHER PTHR11695 16 332 7.5E-101 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS20795 99b2f6cc456a8338104289ee496df735 333 Pfam PF13602 Zinc-binding dehydrogenase 192 330 2.5E-18 T 14-09-2016 PAJ_RS20795 99b2f6cc456a8338104289ee496df735 333 SUPERFAMILY SSF50129 10 136 1.07E-27 T 14-09-2016 IPR011032 GroES-like PAJ_RS20795 99b2f6cc456a8338104289ee496df735 333 SUPERFAMILY SSF51735 116 281 1.31E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20795 99b2f6cc456a8338104289ee496df735 333 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 12 331 7.4E-114 T 14-09-2016 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 PAJ_RS20795 99b2f6cc456a8338104289ee496df735 333 PANTHER PTHR11695:SF558 16 332 7.5E-101 T 14-09-2016 PAJ_RS20795 99b2f6cc456a8338104289ee496df735 333 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 89 1.6E-7 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS20795 99b2f6cc456a8338104289ee496df735 333 Gene3D G3DSA:3.90.180.10 23 151 1.3E-32 T 14-09-2016 IPR011032 GroES-like PAJ_RS13695 b58365fcfcea6739f3beba53a454aad8 131 Gene3D G3DSA:3.10.129.10 1 120 2.1E-16 T 14-09-2016 IPR029069 HotDog domain PAJ_RS13695 b58365fcfcea6739f3beba53a454aad8 131 SUPERFAMILY SSF54637 1 126 1.78E-19 T 14-09-2016 IPR029069 HotDog domain PAJ_RS02025 bd77c71b8b2c127d08a72b66af965610 70 PANTHER PTHR32319 10 69 1.1E-25 T 14-09-2016 PAJ_RS02025 bd77c71b8b2c127d08a72b66af965610 70 Pfam PF13275 S4 domain 10 69 1.5E-25 T 14-09-2016 PAJ_RS02025 bd77c71b8b2c127d08a72b66af965610 70 SUPERFAMILY SSF55174 10 69 4.19E-20 T 14-09-2016 PAJ_RS02025 bd77c71b8b2c127d08a72b66af965610 70 Gene3D G3DSA:3.10.290.10 9 69 4.8E-28 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 PAJ_RS08990 bd27f1d4ca6a86ed3bf5c9faea17b04e 159 Gene3D G3DSA:3.40.960.10 21 154 1.2E-48 T 14-09-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 PAJ_RS08990 bd27f1d4ca6a86ed3bf5c9faea17b04e 159 SUPERFAMILY SSF52980 2 154 5.09E-54 T 14-09-2016 IPR011335 Restriction endonuclease type II-like PAJ_RS08990 bd27f1d4ca6a86ed3bf5c9faea17b04e 159 TIGRFAM TIGR00632 vsr: DNA mismatch endonuclease Vsr 1 118 1.8E-46 T 14-09-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 PAJ_RS08990 bd27f1d4ca6a86ed3bf5c9faea17b04e 159 Pfam PF03852 DNA mismatch endonuclease Vsr 2 74 2.0E-30 T 14-09-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 PAJ_RS04580 f75f9c4de87e9987a724ceced3d0cdf8 263 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 255 1.1E-89 T 14-09-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 PAJ_RS04580 f75f9c4de87e9987a724ceced3d0cdf8 263 PANTHER PTHR10060 1 258 4.7E-130 T 14-09-2016 IPR001130 TatD family GO:0016788 PAJ_RS04580 f75f9c4de87e9987a724ceced3d0cdf8 263 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 14-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PAJ_RS04580 f75f9c4de87e9987a724ceced3d0cdf8 263 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 14-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PAJ_RS04580 f75f9c4de87e9987a724ceced3d0cdf8 263 Pfam PF01026 TatD related DNase 4 255 8.0E-74 T 14-09-2016 IPR001130 TatD family GO:0016788 PAJ_RS04580 f75f9c4de87e9987a724ceced3d0cdf8 263 PIRSF PIRSF005902 1 259 3.7E-72 T 14-09-2016 IPR001130 TatD family GO:0016788 PAJ_RS04580 f75f9c4de87e9987a724ceced3d0cdf8 263 SUPERFAMILY SSF51556 1 258 7.54E-84 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS04580 f75f9c4de87e9987a724ceced3d0cdf8 263 PANTHER PTHR10060:SF20 1 258 4.7E-130 T 14-09-2016 PAJ_RS04580 f75f9c4de87e9987a724ceced3d0cdf8 263 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 126 136 - T 14-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PAJ_RS04580 f75f9c4de87e9987a724ceced3d0cdf8 263 Gene3D G3DSA:3.20.20.140 2 256 1.1E-82 T 14-09-2016 PAJ_RS15130 5f6f907be713180af2a781c6269bb430 214 TIGRFAM TIGR03579 EF_0833: conserved hypothetical protein EF_0833/AHA_3914 6 214 5.5E-118 T 14-09-2016 IPR025456 Protein of unknown function DUF4310 PAJ_RS15130 5f6f907be713180af2a781c6269bb430 214 Pfam PF14187 Domain of unknown function (DUF4310) 5 212 2.8E-106 T 14-09-2016 IPR025456 Protein of unknown function DUF4310 PAJ_RS16840 045032e384a9a724973f22e2cacb7712 247 Pfam PF10014 2OG-Fe dioxygenase 45 235 1.2E-40 T 14-09-2016 IPR018724 2OG-Fe dioxygenase PAJ_RS14615 f6c7c6c87bdac185887cc402dbcb03cd 199 PANTHER PTHR30309:SF0 1 199 4.3E-100 T 14-09-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 PAJ_RS14615 f6c7c6c87bdac185887cc402dbcb03cd 199 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 1.2E-50 T 14-09-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 PAJ_RS14615 f6c7c6c87bdac185887cc402dbcb03cd 199 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 194 3.1E-80 T 14-09-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 PAJ_RS14615 f6c7c6c87bdac185887cc402dbcb03cd 199 SMART SM01207 10 185 1.8E-84 T 14-09-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 PAJ_RS14615 f6c7c6c87bdac185887cc402dbcb03cd 199 PANTHER PTHR30309 1 199 4.3E-100 T 14-09-2016 PAJ_RS14615 f6c7c6c87bdac185887cc402dbcb03cd 199 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 18.684 T 14-09-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 PAJ_RS15375 e308b7573f55a7ac33dc0fea9f0dfb28 334 PANTHER PTHR10264 196 334 1.1E-114 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS15375 e308b7573f55a7ac33dc0fea9f0dfb28 334 PANTHER PTHR10264 5 156 1.1E-114 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS15375 e308b7573f55a7ac33dc0fea9f0dfb28 334 PANTHER PTHR10264:SF80 5 156 1.1E-114 T 14-09-2016 PAJ_RS15375 e308b7573f55a7ac33dc0fea9f0dfb28 334 SUPERFAMILY SSF117892 197 233 6.02E-7 T 14-09-2016 IPR001107 Band 7 domain PAJ_RS15375 e308b7573f55a7ac33dc0fea9f0dfb28 334 PIRSF PIRSF005651 1 334 3.9E-105 T 14-09-2016 IPR010200 HflC GO:0016021|GO:0052547 PAJ_RS15375 e308b7573f55a7ac33dc0fea9f0dfb28 334 SMART SM00244 18 227 2.3E-38 T 14-09-2016 IPR001107 Band 7 domain PAJ_RS15375 e308b7573f55a7ac33dc0fea9f0dfb28 334 SUPERFAMILY SSF117892 56 158 9.15E-17 T 14-09-2016 IPR001107 Band 7 domain PAJ_RS15375 e308b7573f55a7ac33dc0fea9f0dfb28 334 Pfam PF01145 SPFH domain / Band 7 family 22 243 7.4E-33 T 14-09-2016 IPR001107 Band 7 domain PAJ_RS15375 e308b7573f55a7ac33dc0fea9f0dfb28 334 TIGRFAM TIGR01932 hflC: HflC protein 1 327 2.5E-137 T 14-09-2016 IPR010200 HflC GO:0016021|GO:0052547 PAJ_RS15375 e308b7573f55a7ac33dc0fea9f0dfb28 334 PANTHER PTHR10264:SF80 196 334 1.1E-114 T 14-09-2016 PAJ_RS03015 9695313ea61c015151c7cf893bc11e75 235 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 231 4.4E-61 T 14-09-2016 PAJ_RS03015 9695313ea61c015151c7cf893bc11e75 235 PANTHER PTHR23291 1 235 4.5E-92 T 14-09-2016 IPR006214 Bax inhibitor 1-related PAJ_RS03015 9695313ea61c015151c7cf893bc11e75 235 PANTHER PTHR23291:SF42 1 235 4.5E-92 T 14-09-2016 PAJ_RS19220 df33da112075a3d3d51fc187089bc8e5 372 SUPERFAMILY SSF53067 75 357 7.56E-39 T 14-09-2016 PAJ_RS19220 df33da112075a3d3d51fc187089bc8e5 372 Gene3D G3DSA:1.10.10.10 8 69 3.3E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19220 df33da112075a3d3d51fc187089bc8e5 372 SUPERFAMILY SSF46785 7 69 1.99E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19220 df33da112075a3d3d51fc187089bc8e5 372 Pfam PF00480 ROK family 76 333 4.6E-38 T 14-09-2016 IPR000600 ROK family PAJ_RS19220 df33da112075a3d3d51fc187089bc8e5 372 Gene3D G3DSA:3.30.420.40 70 205 4.3E-35 T 14-09-2016 PAJ_RS19220 df33da112075a3d3d51fc187089bc8e5 372 PANTHER PTHR18964 51 360 2.3E-44 T 14-09-2016 PAJ_RS19220 df33da112075a3d3d51fc187089bc8e5 372 PANTHER PTHR18964:SF123 51 360 2.3E-44 T 14-09-2016 PAJ_RS19220 df33da112075a3d3d51fc187089bc8e5 372 Gene3D G3DSA:3.30.420.40 206 330 1.2E-26 T 14-09-2016 PAJ_RS19220 df33da112075a3d3d51fc187089bc8e5 372 Pfam PF13412 Winged helix-turn-helix DNA-binding 9 50 4.1E-5 T 14-09-2016 PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 Pfam PF07731 Multicopper oxidase 362 473 1.4E-12 T 14-09-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 SUPERFAMILY SSF49503 324 469 1.48E-16 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 PANTHER PTHR11709 55 308 1.2E-152 T 14-09-2016 PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 SUPERFAMILY SSF49503 37 170 1.41E-21 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 Gene3D G3DSA:2.60.40.420 35 174 4.7E-19 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 Pfam PF07732 Multicopper oxidase 56 170 6.3E-23 T 14-09-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 Pfam PF00394 Multicopper oxidase 233 293 1.9E-5 T 14-09-2016 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 PANTHER PTHR11709:SF69 55 308 1.2E-152 T 14-09-2016 PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 Gene3D G3DSA:2.60.40.420 175 291 5.1E-33 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 Hamap MF_00915 Cell division protein FtsP [ftsP]. 1 472 56.684 T 14-09-2016 IPR026589 Cell division protein FtsP GO:0043093 PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 SUPERFAMILY SSF49503 176 313 3.45E-30 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS14465 89df4a1f4a8f1fbb8daedf02c1f263a0 476 Gene3D G3DSA:2.60.40.420 356 472 1.9E-11 T 14-09-2016 IPR008972 Cupredoxin PAJ_RS04040 54b54052ff2a2f24e866f0d48013e11c 78 Pfam PF01381 Helix-turn-helix 8 60 1.1E-8 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS04040 54b54052ff2a2f24e866f0d48013e11c 78 SUPERFAMILY SSF47413 7 62 3.1E-9 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS04040 54b54052ff2a2f24e866f0d48013e11c 78 SMART SM00530 7 62 6.6E-6 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS04040 54b54052ff2a2f24e866f0d48013e11c 78 Gene3D G3DSA:1.10.260.40 8 62 5.7E-9 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS03335 43005b61e260094f1f65f1ac56b63a6f 252 PANTHER PTHR10953 4 249 1.9E-86 T 14-09-2016 PAJ_RS03335 43005b61e260094f1f65f1ac56b63a6f 252 Gene3D G3DSA:3.40.50.720 5 249 3.5E-79 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS03335 43005b61e260094f1f65f1ac56b63a6f 252 Pfam PF00899 ThiF family 13 245 9.8E-64 T 14-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 PAJ_RS03335 43005b61e260094f1f65f1ac56b63a6f 252 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 9 248 2.0E-121 T 14-09-2016 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS03335 43005b61e260094f1f65f1ac56b63a6f 252 SUPERFAMILY SSF69572 4 249 2.09E-87 T 14-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 PAJ_RS10485 76e044f06a4f7a9ce1e5ce9a08d1dc00 451 PANTHER PTHR30026:SF4 39 441 7.2E-45 T 14-09-2016 PAJ_RS10485 76e044f06a4f7a9ce1e5ce9a08d1dc00 451 Gene3D G3DSA:1.20.1600.10 36 428 3.6E-60 T 14-09-2016 PAJ_RS10485 76e044f06a4f7a9ce1e5ce9a08d1dc00 451 SUPERFAMILY SSF56954 5 431 3.92E-69 T 14-09-2016 PAJ_RS10485 76e044f06a4f7a9ce1e5ce9a08d1dc00 451 PANTHER PTHR30026 39 441 7.2E-45 T 14-09-2016 PAJ_RS10485 76e044f06a4f7a9ce1e5ce9a08d1dc00 451 Pfam PF02321 Outer membrane efflux protein 48 231 5.1E-27 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS10485 76e044f06a4f7a9ce1e5ce9a08d1dc00 451 Pfam PF02321 Outer membrane efflux protein 253 426 9.4E-20 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS10485 76e044f06a4f7a9ce1e5ce9a08d1dc00 451 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 45 440 8.5E-90 T 14-09-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 PAJ_RS01525 6542496702e2b0a3dd6aa11c74b3fe64 448 PIRSF PIRSF006060 1 448 2.7E-72 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS01525 6542496702e2b0a3dd6aa11c74b3fe64 448 ProSitePatterns PS00218 Amino acid permeases signature. 40 70 - T 14-09-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PAJ_RS01525 6542496702e2b0a3dd6aa11c74b3fe64 448 Pfam PF00324 Amino acid permease 15 447 3.4E-105 T 14-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PAJ_RS01525 6542496702e2b0a3dd6aa11c74b3fe64 448 PANTHER PTHR11785:SF352 1 448 0.0 T 14-09-2016 PAJ_RS01525 6542496702e2b0a3dd6aa11c74b3fe64 448 PANTHER PTHR11785 1 448 0.0 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS05525 6da97b4b6984f23d45f9883ece814f67 363 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 7 361 2.2E-108 T 14-09-2016 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 PAJ_RS05525 6da97b4b6984f23d45f9883ece814f67 363 PANTHER PTHR37958:SF1 2 363 5.6E-125 T 14-09-2016 PAJ_RS05525 6da97b4b6984f23d45f9883ece814f67 363 PANTHER PTHR37958 2 363 5.6E-125 T 14-09-2016 PAJ_RS05525 6da97b4b6984f23d45f9883ece814f67 363 Pfam PF01699 Sodium/calcium exchanger protein 37 187 1.1E-12 T 14-09-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 PAJ_RS05525 6da97b4b6984f23d45f9883ece814f67 363 Pfam PF01699 Sodium/calcium exchanger protein 220 360 5.8E-10 T 14-09-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 PAJ_RS08290 8dfb2535a32baf8ace805c6601c79229 275 Pfam PF05425 Copper resistance protein D 169 268 2.9E-19 T 14-09-2016 IPR008457 Copper resistance protein D GO:0016021 PAJ_RS08290 8dfb2535a32baf8ace805c6601c79229 275 PANTHER PTHR34820:SF2 1 274 1.1E-41 T 14-09-2016 PAJ_RS08290 8dfb2535a32baf8ace805c6601c79229 275 PANTHER PTHR34820 1 274 1.1E-41 T 14-09-2016 PAJ_RS02265 a1f0b7ef138683e371556acf825083a6 186 Pfam PF00419 Fimbrial protein 48 185 8.2E-14 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS02265 a1f0b7ef138683e371556acf825083a6 186 PANTHER PTHR33420 15 186 1.0E-11 T 14-09-2016 PAJ_RS02265 a1f0b7ef138683e371556acf825083a6 186 Gene3D G3DSA:2.60.40.1090 40 185 5.0E-28 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS02265 a1f0b7ef138683e371556acf825083a6 186 SUPERFAMILY SSF49401 40 186 1.74E-25 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 294 1.4E-50 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 PANTHER PTHR10996 1 370 8.3E-241 T 14-09-2016 PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 Gene3D G3DSA:3.40.50.720 121 297 5.2E-62 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 1.2E-36 T 14-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 SUPERFAMILY SSF51735 108 295 3.03E-57 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 14-09-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 Gene3D G3DSA:3.40.50.720 8 120 1.6E-34 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 SUPERFAMILY SSF55021 338 411 4.2E-18 T 14-09-2016 PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 Gene3D G3DSA:3.30.70.260 324 411 3.3E-28 T 14-09-2016 PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 SUPERFAMILY SSF52283 7 137 6.59E-49 T 14-09-2016 PAJ_RS13360 d6752b0b04fcd0120ee1f9b0737906b1 412 PANTHER PTHR10996:SF18 1 370 8.3E-241 T 14-09-2016 IPR029015 D-3-phosphoglycerate dehydrogenase, type2 GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|UniPathway: UPA00135 PAJ_RS20440 12b4001cddc579e04d4e68d6787d6d76 563 Pfam PF00535 Glycosyl transferase family 2 8 127 6.1E-17 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS20440 12b4001cddc579e04d4e68d6787d6d76 563 PANTHER PTHR10859:SF84 8 347 1.6E-78 T 14-09-2016 PAJ_RS20440 12b4001cddc579e04d4e68d6787d6d76 563 SUPERFAMILY SSF53448 8 239 4.5E-30 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS20440 12b4001cddc579e04d4e68d6787d6d76 563 PANTHER PTHR10859 8 347 1.6E-78 T 14-09-2016 PAJ_RS20440 12b4001cddc579e04d4e68d6787d6d76 563 Gene3D G3DSA:3.90.550.10 9 127 1.2E-10 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS14570 1ae734f63fa7cb1297416b0b20c51d1e 218 PANTHER PTHR21327 1 215 1.4E-156 T 14-09-2016 PAJ_RS14570 1ae734f63fa7cb1297416b0b20c51d1e 218 Gene3D G3DSA:3.90.870.10 12 214 1.5E-93 T 14-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PAJ_RS14570 1ae734f63fa7cb1297416b0b20c51d1e 218 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 17 208 4.7E-82 T 14-09-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS14570 1ae734f63fa7cb1297416b0b20c51d1e 218 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 213 42.61 T 14-09-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS14570 1ae734f63fa7cb1297416b0b20c51d1e 218 PANTHER PTHR21327:SF15 1 215 1.4E-156 T 14-09-2016 PAJ_RS14570 1ae734f63fa7cb1297416b0b20c51d1e 218 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 14 209 1.9E-82 T 14-09-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PAJ_RS14570 1ae734f63fa7cb1297416b0b20c51d1e 218 SUPERFAMILY SSF55821 7 213 2.17E-85 T 14-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PAJ_RS09495 f201ee411f58d093ede9e77c4845125b 282 Gene3D G3DSA:1.10.3720.10 68 269 3.1E-20 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09495 f201ee411f58d093ede9e77c4845125b 282 SUPERFAMILY SSF161098 72 259 7.85E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09495 f201ee411f58d093ede9e77c4845125b 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 271 7.9E-24 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09495 f201ee411f58d093ede9e77c4845125b 282 PANTHER PTHR30465 7 278 1.3E-62 T 14-09-2016 PAJ_RS09495 f201ee411f58d093ede9e77c4845125b 282 PANTHER PTHR30465:SF10 7 278 1.3E-62 T 14-09-2016 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 Pfam PF02203 Tar ligand binding domain homologue 33 183 2.0E-20 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 SUPERFAMILY SSF47170 54 193 3.01E-26 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 SMART SM00283 288 535 9.6E-30 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 PANTHER PTHR32089 153 538 5.6E-51 T 14-09-2016 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 SUPERFAMILY SSF58104 267 536 5.62E-40 T 14-09-2016 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 Gene3D G3DSA:1.20.120.30 63 195 3.3E-28 T 14-09-2016 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 32 57 1.4E-22 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 87 102 1.4E-22 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 309 338 1.4E-22 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 413 1.4E-22 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 415 444 1.4E-22 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 463 492 1.4E-22 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 342 534 4.6E-32 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS09000 62bc5699cfcb30dad61e091ca2742072 538 Gene3D G3DSA:1.10.287.950 303 506 1.0E-33 T 14-09-2016 PAJ_RS17485 ab24a69956515f9bfbaf550a6418a898 209 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 14-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PAJ_RS17485 ab24a69956515f9bfbaf550a6418a898 209 PIRSF PIRSF001488 1 209 1.6E-82 T 14-09-2016 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL PAJ_RS17485 ab24a69956515f9bfbaf550a6418a898 209 Pfam PF01323 DSBA-like thioredoxin domain 40 182 2.4E-25 T 14-09-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 PAJ_RS17485 ab24a69956515f9bfbaf550a6418a898 209 SUPERFAMILY SSF52833 20 207 1.07E-44 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS17485 ab24a69956515f9bfbaf550a6418a898 209 Gene3D G3DSA:3.40.30.10 1 119 2.2E-41 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS17485 ab24a69956515f9bfbaf550a6418a898 209 Gene3D G3DSA:3.40.30.10 121 206 3.3E-22 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS17485 ab24a69956515f9bfbaf550a6418a898 209 PANTHER PTHR35891 1 209 3.4E-89 T 14-09-2016 PAJ_RS17485 ab24a69956515f9bfbaf550a6418a898 209 PANTHER PTHR35891:SF2 1 209 3.4E-89 T 14-09-2016 PAJ_RS13345 3d07c39b469ef76ab3a4fa7c73f6b5da 109 PANTHER PTHR34981:SF1 2 109 5.0E-31 T 14-09-2016 PAJ_RS13345 3d07c39b469ef76ab3a4fa7c73f6b5da 109 PANTHER PTHR34981 2 109 5.0E-31 T 14-09-2016 PAJ_RS13345 3d07c39b469ef76ab3a4fa7c73f6b5da 109 Pfam PF05164 Cell division protein ZapA 6 90 8.0E-20 T 14-09-2016 IPR007838 Cell division protein ZapA-like PAJ_RS13345 3d07c39b469ef76ab3a4fa7c73f6b5da 109 Hamap MF_02012 Cell division protein ZapA [zapA]. 1 109 34.091 T 14-09-2016 IPR023771 Cell division protein ZapA, eubacteria PAJ_RS13345 3d07c39b469ef76ab3a4fa7c73f6b5da 109 SUPERFAMILY SSF102829 6 95 2.62E-25 T 14-09-2016 IPR007838 Cell division protein ZapA-like PAJ_RS00185 68a10068ad4fe15b04aa66a2092d59e1 254 PANTHER PTHR30353:SF7 1 254 4.0E-142 T 14-09-2016 PAJ_RS00185 68a10068ad4fe15b04aa66a2092d59e1 254 PANTHER PTHR30353 1 254 4.0E-142 T 14-09-2016 IPR032818 DedA family PAJ_RS00185 68a10068ad4fe15b04aa66a2092d59e1 254 Pfam PF09335 SNARE associated Golgi protein 36 159 1.3E-16 T 14-09-2016 IPR032816 SNARE associated Golgi protein PAJ_RS10200 5c185b3eba52174c2112293d82ad2035 358 PANTHER PTHR30472 19 358 1.1E-168 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS10200 5c185b3eba52174c2112293d82ad2035 358 SUPERFAMILY SSF81345 21 353 1.03E-79 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS10200 5c185b3eba52174c2112293d82ad2035 358 Gene3D G3DSA:1.10.3470.10 21 355 6.6E-99 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS10200 5c185b3eba52174c2112293d82ad2035 358 PANTHER PTHR30472:SF25 19 358 1.1E-168 T 14-09-2016 PAJ_RS10200 5c185b3eba52174c2112293d82ad2035 358 Pfam PF01032 FecCD transport family 39 353 1.5E-84 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 PANTHER PTHR10210 1 312 1.3E-188 T 14-09-2016 PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 126 141 - T 14-09-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 Pfam PF14572 Phosphoribosyl synthetase-associated domain 201 310 3.3E-30 T 14-09-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 1 311 49.72 T 14-09-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 Gene3D G3DSA:3.40.50.2020 1 156 4.5E-71 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 1 311 3.3E-127 T 14-09-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 1 118 2.0E-49 T 14-09-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 PANTHER PTHR10210:SF41 1 312 1.3E-188 T 14-09-2016 PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 SMART SM01400 1 118 5.7E-76 T 14-09-2016 PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 Gene3D G3DSA:3.40.50.2020 157 282 7.5E-53 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS05480 6a5d885aaf8d330878e2f161c8116283 312 SUPERFAMILY SSF53271 66 303 3.57E-67 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 218 232 7.6E-16 T 14-09-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 90 106 7.6E-16 T 14-09-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 271 284 7.6E-16 T 14-09-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 PANTHER PTHR10629:SF31 18 450 5.1E-76 T 14-09-2016 PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 Gene3D G3DSA:3.40.50.150 85 319 7.0E-55 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 SUPERFAMILY SSF53335 89 452 9.51E-75 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 PANTHER PTHR10629 18 450 5.1E-76 T 14-09-2016 PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 Gene3D G3DSA:3.90.120.10 320 438 3.0E-27 T 14-09-2016 PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 Pfam PF00145 C-5 cytosine-specific DNA methylase 89 448 4.6E-73 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 91 449 1.5E-100 T 14-09-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 PAJ_RS08995 8c34bf69ed81bea56fe1a38a613d0401 459 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 432 450 - T 14-09-2016 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 PAJ_RS14190 4aef45d80aecc00d23e976a8845043bf 204 PANTHER PTHR34606 6 204 2.1E-59 T 14-09-2016 PAJ_RS14190 4aef45d80aecc00d23e976a8845043bf 204 SMART SM00749 141 204 6.3E-12 T 14-09-2016 IPR014004 Transport-associated and nodulation domain, bacteria PAJ_RS14190 4aef45d80aecc00d23e976a8845043bf 204 SMART SM00749 62 125 4.0E-10 T 14-09-2016 IPR014004 Transport-associated and nodulation domain, bacteria PAJ_RS14190 4aef45d80aecc00d23e976a8845043bf 204 PANTHER PTHR34606:SF3 6 204 2.1E-59 T 14-09-2016 PAJ_RS14190 4aef45d80aecc00d23e976a8845043bf 204 Pfam PF04972 BON domain 57 124 1.2E-19 T 14-09-2016 IPR007055 BON domain PAJ_RS14190 4aef45d80aecc00d23e976a8845043bf 204 Pfam PF04972 BON domain 137 203 6.9E-20 T 14-09-2016 IPR007055 BON domain PAJ_RS10940 37a634c9a09b4480b369ed7b07160e9c 254 PRINTS PR01805 VacJ lipoprotein signature 102 119 1.3E-34 T 14-09-2016 IPR007428 MlaA lipoprotein GO:0016020 PAJ_RS10940 37a634c9a09b4480b369ed7b07160e9c 254 PRINTS PR01805 VacJ lipoprotein signature 33 46 1.3E-34 T 14-09-2016 IPR007428 MlaA lipoprotein GO:0016020 PAJ_RS10940 37a634c9a09b4480b369ed7b07160e9c 254 PRINTS PR01805 VacJ lipoprotein signature 51 67 1.3E-34 T 14-09-2016 IPR007428 MlaA lipoprotein GO:0016020 PAJ_RS10940 37a634c9a09b4480b369ed7b07160e9c 254 PRINTS PR01805 VacJ lipoprotein signature 141 158 1.3E-34 T 14-09-2016 IPR007428 MlaA lipoprotein GO:0016020 PAJ_RS10940 37a634c9a09b4480b369ed7b07160e9c 254 Pfam PF04333 MlaA lipoprotein 32 225 1.2E-64 T 14-09-2016 IPR007428 MlaA lipoprotein GO:0016020 PAJ_RS10940 37a634c9a09b4480b369ed7b07160e9c 254 PANTHER PTHR30035 1 253 1.2E-110 T 14-09-2016 IPR007428 MlaA lipoprotein GO:0016020 PAJ_RS10940 37a634c9a09b4480b369ed7b07160e9c 254 PANTHER PTHR30035:SF3 1 253 1.2E-110 T 14-09-2016 PAJ_RS08650 21fa34de895af0e7b163f167ece434ee 494 PANTHER PTHR11819:SF148 4 485 2.6E-189 T 14-09-2016 PAJ_RS08650 21fa34de895af0e7b163f167ece434ee 494 Pfam PF00474 Sodium:solute symporter family 35 437 1.8E-138 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS08650 21fa34de895af0e7b163f167ece434ee 494 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 2.9E-126 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS08650 21fa34de895af0e7b163f167ece434ee 494 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 489 3.1E-228 T 14-09-2016 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 PAJ_RS08650 21fa34de895af0e7b163f167ece434ee 494 PANTHER PTHR11819 4 485 2.6E-189 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS08650 21fa34de895af0e7b163f167ece434ee 494 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 14-09-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 PAJ_RS08650 21fa34de895af0e7b163f167ece434ee 494 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 14-09-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 PAJ_RS19730 22f9078eea348b671262be86b205824b 284 Pfam PF03668 P-loop ATPase protein family 1 282 6.0E-145 T 14-09-2016 IPR005337 RapZ-like family GO:0005524 PAJ_RS19730 22f9078eea348b671262be86b205824b 284 SUPERFAMILY SSF52540 2 151 3.82E-12 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19730 22f9078eea348b671262be86b205824b 284 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 281 41.149 T 14-09-2016 IPR005337 RapZ-like family GO:0005524 PAJ_RS19730 22f9078eea348b671262be86b205824b 284 PIRSF PIRSF005052 1 284 8.1E-114 T 14-09-2016 IPR005337 RapZ-like family GO:0005524 PAJ_RS19730 22f9078eea348b671262be86b205824b 284 Gene3D G3DSA:3.40.50.300 2 150 3.1E-14 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19730 22f9078eea348b671262be86b205824b 284 PANTHER PTHR30448 1 283 1.1E-156 T 14-09-2016 PAJ_RS19730 22f9078eea348b671262be86b205824b 284 PANTHER PTHR30448:SF0 1 283 1.1E-156 T 14-09-2016 PAJ_RS08980 e1f2f4ec37c005042d58440ba2dc9dea 300 PIRSF PIRSF016660 1 300 1.3E-124 T 14-09-2016 IPR008526 Inner membrane protein YedI PAJ_RS08980 e1f2f4ec37c005042d58440ba2dc9dea 300 PANTHER PTHR30503 2 299 1.2E-97 T 14-09-2016 PAJ_RS08980 e1f2f4ec37c005042d58440ba2dc9dea 300 Pfam PF05661 Protein of unknown function (DUF808) 4 291 1.0E-113 T 14-09-2016 IPR008526 Inner membrane protein YedI PAJ_RS11865 bbe7b25ca5976dfe63508b157af247c8 373 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 351 3.9E-124 T 14-09-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 PAJ_RS11865 bbe7b25ca5976dfe63508b157af247c8 373 PANTHER PTHR30454 1 372 8.1E-223 T 14-09-2016 PAJ_RS11865 bbe7b25ca5976dfe63508b157af247c8 373 SUPERFAMILY SSF51604 24 138 4.94E-9 T 14-09-2016 IPR029065 Enolase C-terminal domain-like PAJ_RS11865 bbe7b25ca5976dfe63508b157af247c8 373 SUPERFAMILY SSF56014 265 354 1.21E-10 T 14-09-2016 PAJ_RS11865 bbe7b25ca5976dfe63508b157af247c8 373 Gene3D G3DSA:3.20.20.70 30 132 9.5E-9 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS11865 bbe7b25ca5976dfe63508b157af247c8 373 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 359 34.408 T 14-09-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 PAJ_RS11865 bbe7b25ca5976dfe63508b157af247c8 373 Pfam PF04551 GcpE protein 13 354 1.1E-130 T 14-09-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 PAJ_RS11865 bbe7b25ca5976dfe63508b157af247c8 373 PIRSF PIRSF004640 1 364 4.6E-146 T 14-09-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 Gene3D G3DSA:3.30.1360.10 9 57 1.5E-10 T 14-09-2016 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 PANTHER PTHR32108:SF0 1 329 1.2E-159 T 14-09-2016 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 6.0E-24 T 14-09-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 Gene3D G3DSA:1.10.150.20 244 328 6.1E-38 T 14-09-2016 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 1.6E-23 T 14-09-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 5.0E-24 T 14-09-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 1.1E-112 T 14-09-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 SMART SM00662 23 234 6.6E-106 T 14-09-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.577 T 14-09-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 PANTHER PTHR32108 1 329 1.2E-159 T 14-09-2016 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 Gene3D G3DSA:2.170.120.12 58 177 5.5E-40 T 14-09-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 SUPERFAMILY SSF56553 53 178 2.09E-41 T 14-09-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 14-09-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 SUPERFAMILY SSF55257 179 233 3.53E-30 T 14-09-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 SUPERFAMILY SSF55257 7 53 3.53E-30 T 14-09-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PAJ_RS15730 9ef02a12f66eb5bbd22ace09ff41ae6e 329 SUPERFAMILY SSF47789 251 325 1.27E-25 T 14-09-2016 PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 Gene3D G3DSA:3.30.70.360 177 293 1.6E-36 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 SUPERFAMILY SSF55031 179 292 1.5E-27 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 Pfam PF07687 Peptidase dimerisation domain 181 275 2.9E-12 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 13 370 2.0E-102 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 PANTHER PTHR11014 3 386 1.2E-144 T 14-09-2016 PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 SUPERFAMILY SSF53187 4 193 2.09E-85 T 14-09-2016 PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 SUPERFAMILY SSF53187 294 382 2.09E-85 T 14-09-2016 PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 PANTHER PTHR11014:SF63 3 386 1.2E-144 T 14-09-2016 PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 Gene3D G3DSA:3.40.630.10 294 382 9.5E-97 T 14-09-2016 PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 Gene3D G3DSA:3.40.630.10 6 174 9.5E-97 T 14-09-2016 PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 Pfam PF01546 Peptidase family M20/M25/M40 69 379 2.8E-32 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS03170 9807ae1d1a0c8f5439441d77b7214ec7 387 PIRSF PIRSF005962 1 385 1.5E-122 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 PAJ_RS10190 f89d3949bc495b39b85bba09f36a8a11 281 PANTHER PTHR10061 4 281 2.0E-167 T 14-09-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 PAJ_RS10190 f89d3949bc495b39b85bba09f36a8a11 281 Pfam PF00756 Putative esterase 25 272 1.6E-63 T 14-09-2016 IPR000801 Putative esterase PAJ_RS10190 f89d3949bc495b39b85bba09f36a8a11 281 Gene3D G3DSA:3.40.50.1820 5 278 2.2E-76 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS10190 f89d3949bc495b39b85bba09f36a8a11 281 SUPERFAMILY SSF53474 5 278 1.14E-89 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS10190 f89d3949bc495b39b85bba09f36a8a11 281 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 278 8.2E-118 T 14-09-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 PAJ_RS13235 8b6cb80b77a5d76a8b3f04ea0ae1bfaa 387 Gene3D G3DSA:1.20.1250.20 5 184 1.9E-29 T 14-09-2016 PAJ_RS13235 8b6cb80b77a5d76a8b3f04ea0ae1bfaa 387 Gene3D G3DSA:1.20.1250.20 200 379 1.2E-11 T 14-09-2016 PAJ_RS13235 8b6cb80b77a5d76a8b3f04ea0ae1bfaa 387 PANTHER PTHR23501 1 377 2.5E-164 T 14-09-2016 PAJ_RS13235 8b6cb80b77a5d76a8b3f04ea0ae1bfaa 387 Pfam PF07690 Major Facilitator Superfamily 8 316 2.2E-40 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS13235 8b6cb80b77a5d76a8b3f04ea0ae1bfaa 387 SUPERFAMILY SSF103473 3 377 3.66E-56 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS13235 8b6cb80b77a5d76a8b3f04ea0ae1bfaa 387 PANTHER PTHR23501:SF4 1 377 2.5E-164 T 14-09-2016 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 63.458 T 14-09-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 PANTHER PTHR11735 1 336 8.7E-166 T 14-09-2016 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 5.4E-53 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 5.4E-53 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 5.4E-53 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 5.4E-53 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 5.4E-53 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 5.4E-53 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 3.4E-127 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 Pfam PF00814 Glycoprotease family 24 307 3.6E-103 T 14-09-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 14-09-2016 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 PANTHER PTHR11735:SF6 1 336 8.7E-166 T 14-09-2016 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 Gene3D G3DSA:3.30.420.40 1 159 7.1E-50 T 14-09-2016 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 1.3E-135 T 14-09-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PAJ_RS14620 4f0b266c1e2bbdc338f8f1c19cec365f 337 SUPERFAMILY SSF53067 1 309 4.17E-42 T 14-09-2016 PAJ_RS05880 8499334a737f4e7775d883a479e9216f 407 Pfam PF00266 Aminotransferase class-V 26 394 3.8E-155 T 14-09-2016 IPR000192 Aminotransferase class V domain PAJ_RS05880 8499334a737f4e7775d883a479e9216f 407 Gene3D G3DSA:3.90.1150.10 285 399 8.8E-29 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS05880 8499334a737f4e7775d883a479e9216f 407 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 7 405 4.3E-181 T 14-09-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 PAJ_RS05880 8499334a737f4e7775d883a479e9216f 407 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 217 236 - T 14-09-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PAJ_RS05880 8499334a737f4e7775d883a479e9216f 407 PANTHER PTHR11601 6 405 3.0E-196 T 14-09-2016 PAJ_RS05880 8499334a737f4e7775d883a479e9216f 407 SUPERFAMILY SSF53383 3 402 5.36E-129 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS05880 8499334a737f4e7775d883a479e9216f 407 Gene3D G3DSA:3.40.640.10 37 284 4.1E-86 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS05880 8499334a737f4e7775d883a479e9216f 407 PANTHER PTHR11601:SF17 6 405 3.0E-196 T 14-09-2016 PAJ_RS04050 f109ecd81523bdee7242672df00e882f 292 Pfam PF09524 Conserved phage C-terminus (Phg_2220_C) 181 252 4.5E-19 T 14-09-2016 IPR011741 Phage conserved hypothetical protein, C-terminal PAJ_RS11200 b00ea8e6c8a0a03a605460d43195c850 120 Pfam PF10697 Protein of unknown function (DUF2502) 28 104 9.2E-12 T 14-09-2016 IPR019638 Protein of unknown function DUF2502 PAJ_RS19260 b3c80851e33db37f8869806452ddc863 310 PANTHER PTHR30537:SF5 4 304 3.2E-102 T 14-09-2016 PAJ_RS19260 b3c80851e33db37f8869806452ddc863 310 Gene3D G3DSA:1.10.10.10 13 91 8.8E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19260 b3c80851e33db37f8869806452ddc863 310 Gene3D G3DSA:3.40.190.10 186 269 1.6E-20 T 14-09-2016 PAJ_RS19260 b3c80851e33db37f8869806452ddc863 310 SUPERFAMILY SSF46785 7 118 2.39E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19260 b3c80851e33db37f8869806452ddc863 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 9.9E-18 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS19260 b3c80851e33db37f8869806452ddc863 310 PANTHER PTHR30537 4 304 3.2E-102 T 14-09-2016 PAJ_RS19260 b3c80851e33db37f8869806452ddc863 310 Pfam PF03466 LysR substrate binding domain 96 301 8.9E-43 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS19260 b3c80851e33db37f8869806452ddc863 310 Gene3D G3DSA:3.40.190.10 100 185 5.8E-24 T 14-09-2016 PAJ_RS19260 b3c80851e33db37f8869806452ddc863 310 SUPERFAMILY SSF53850 97 303 5.25E-44 T 14-09-2016 PAJ_RS02470 4cc6e7c938ec2e0a718baa13993384f5 199 PANTHER PTHR38098 1 173 2.5E-60 T 14-09-2016 PAJ_RS02470 4cc6e7c938ec2e0a718baa13993384f5 199 Pfam PF04390 Lipopolysaccharide-assembly 12 161 6.0E-23 T 14-09-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 PAJ_RS02470 4cc6e7c938ec2e0a718baa13993384f5 199 PANTHER PTHR38098:SF1 1 173 2.5E-60 T 14-09-2016 PAJ_RS02470 4cc6e7c938ec2e0a718baa13993384f5 199 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 5 166 25.977 T 14-09-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 PAJ_RS02470 4cc6e7c938ec2e0a718baa13993384f5 199 Gene3D G3DSA:3.30.160.150 20 172 3.2E-59 T 14-09-2016 PAJ_RS05330 bc54cff13f14046c233ef057095b9c05 115 SMART SM00507 15 70 2.9E-5 T 14-09-2016 IPR003615 HNH nuclease PAJ_RS05330 bc54cff13f14046c233ef057095b9c05 115 Pfam PF01844 HNH endonuclease 27 75 4.8E-12 T 14-09-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 SMART SM00387 464 557 2.9E-9 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 467 555 5.2E-6 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 32 134 4.5E-20 T 14-09-2016 IPR029095 NarX-like, N-terminal PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 SUPERFAMILY SSF55874 429 554 2.49E-15 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 SUPERFAMILY SSF158472 176 224 1.44E-5 T 14-09-2016 PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 SMART SM00304 174 227 0.0046 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 Gene3D G3DSA:3.30.565.10 426 555 3.2E-9 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 Pfam PF07730 Histidine kinase 360 423 4.0E-15 T 14-09-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 Pfam PF00672 HAMP domain 154 223 5.8E-9 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 PANTHER PTHR24421:SF25 2 286 1.8E-166 T 14-09-2016 PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 PANTHER PTHR24421:SF25 355 554 1.8E-166 T 14-09-2016 PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 PANTHER PTHR24421 2 286 1.8E-166 T 14-09-2016 PAJ_RS11505 9b8edffa695795e3c372c77fe149004f 562 PANTHER PTHR24421 355 554 1.8E-166 T 14-09-2016 PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 SUPERFAMILY SSF52540 5 256 9.08E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 505 529 0.091 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 264 0.06 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 Pfam PF00005 ABC transporter 26 184 1.1E-26 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 Pfam PF00005 ABC transporter 303 454 3.4E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 PANTHER PTHR24220:SF574 7 411 7.4E-187 T 14-09-2016 PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 SUPERFAMILY SSF52540 276 525 9.32E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 Gene3D G3DSA:3.40.50.300 4 258 1.4E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 Gene3D G3DSA:3.40.50.300 275 527 1.9E-77 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 SMART SM00382 34 242 3.1E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 SMART SM00382 311 502 4.3E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10315 e1ba7d95114b9e6e82bb84ee02d69716 534 PANTHER PTHR24220 7 411 7.4E-187 T 14-09-2016 PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 6 179 6.4E-16 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 180 1.9E-25 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 2.2E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 2.2E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 95 108 2.2E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 163 2.2E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 Gene3D G3DSA:3.40.50.1000 65 210 2.0E-44 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 PANTHER PTHR18901:SF20 1 205 5.8E-117 T 14-09-2016 PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 PANTHER PTHR18901 1 205 5.8E-117 T 14-09-2016 PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 Gene3D G3DSA:1.10.150.240 19 56 2.6E-5 T 14-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PAJ_RS10650 c7e9cd513a7ebd46af4a408eb69eb077 219 SUPERFAMILY SSF56784 3 203 1.6E-41 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.0E-14 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.0E-14 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.0E-14 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 229 4.0E-56 T 14-09-2016 PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PANTHER PTHR24322 10 138 5.4E-49 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PANTHER PTHR24322 154 186 5.4E-49 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 SUPERFAMILY SSF51735 1 245 2.44E-71 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PANTHER PTHR24322:SF328 10 138 5.4E-49 T 14-09-2016 PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PANTHER PTHR24322:SF328 154 186 5.4E-49 T 14-09-2016 PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 Gene3D G3DSA:3.40.50.720 2 244 4.2E-73 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.1E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.1E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.1E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.1E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.1E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07015 5ec0fd610c9299b1c71523071ee3b82f 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.1E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS01285 878147cfeb7ac90be11dfca930b9d995 169 Pfam PF10004 Uncharacterized protein conserved in bacteria (DUF2247) 9 163 1.0E-53 T 14-09-2016 IPR016630 Uncharacterised conserved protein UCP015278 PAJ_RS01285 878147cfeb7ac90be11dfca930b9d995 169 PIRSF PIRSF015278 1 169 3.0E-49 T 14-09-2016 IPR016630 Uncharacterised conserved protein UCP015278 PAJ_RS01770 fc675086c60f6f720705b0ce1847d6e7 591 Pfam PF00664 ABC transporter transmembrane region 27 295 8.0E-42 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS01770 fc675086c60f6f720705b0ce1847d6e7 591 PANTHER PTHR24221:SF256 6 584 0.0 T 14-09-2016 PAJ_RS01770 fc675086c60f6f720705b0ce1847d6e7 591 SMART SM00382 366 551 9.1E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01770 fc675086c60f6f720705b0ce1847d6e7 591 Gene3D G3DSA:3.40.50.300 340 576 4.0E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01770 fc675086c60f6f720705b0ce1847d6e7 591 Gene3D G3DSA:1.20.1560.10 12 325 4.6E-72 T 14-09-2016 PAJ_RS01770 fc675086c60f6f720705b0ce1847d6e7 591 PANTHER PTHR24221 6 584 0.0 T 14-09-2016 PAJ_RS01770 fc675086c60f6f720705b0ce1847d6e7 591 SUPERFAMILY SSF90123 12 325 3.14E-68 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS01770 fc675086c60f6f720705b0ce1847d6e7 591 Pfam PF00005 ABC transporter 357 505 3.2E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS01770 fc675086c60f6f720705b0ce1847d6e7 591 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS01770 fc675086c60f6f720705b0ce1847d6e7 591 SUPERFAMILY SSF52540 335 576 9.01E-79 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00075 d048e1752f65f7b2804b2f85344ce2b0 167 TIGRFAM TIGR00077 lspA: signal peptidase II 5 163 2.1E-54 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PAJ_RS00075 d048e1752f65f7b2804b2f85344ce2b0 167 PANTHER PTHR33695:SF1 9 166 1.8E-56 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PAJ_RS00075 d048e1752f65f7b2804b2f85344ce2b0 167 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 162 16.963 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PAJ_RS00075 d048e1752f65f7b2804b2f85344ce2b0 167 Pfam PF01252 Signal peptidase (SPase) II 16 157 1.1E-34 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PAJ_RS00075 d048e1752f65f7b2804b2f85344ce2b0 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 101 116 1.1E-17 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PAJ_RS00075 d048e1752f65f7b2804b2f85344ce2b0 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 53 61 1.1E-17 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PAJ_RS00075 d048e1752f65f7b2804b2f85344ce2b0 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 1.1E-17 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PAJ_RS00075 d048e1752f65f7b2804b2f85344ce2b0 167 PANTHER PTHR33695 9 166 1.8E-56 T 14-09-2016 PAJ_RS17255 9ad42f89230ac3dd67a1f33e86fd5e2f 316 PANTHER PTHR22916:SF24 1 314 2.2E-84 T 14-09-2016 PAJ_RS17255 9ad42f89230ac3dd67a1f33e86fd5e2f 316 PANTHER PTHR22916 1 314 2.2E-84 T 14-09-2016 PAJ_RS17255 9ad42f89230ac3dd67a1f33e86fd5e2f 316 SUPERFAMILY SSF53448 2 219 7.59E-47 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS17255 9ad42f89230ac3dd67a1f33e86fd5e2f 316 Pfam PF00535 Glycosyl transferase family 2 1 122 4.4E-29 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS17255 9ad42f89230ac3dd67a1f33e86fd5e2f 316 Gene3D G3DSA:3.90.550.10 2 195 2.4E-48 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS07170 7147373ef646bb028d7c1a1bf5dce308 680 PANTHER PTHR11804 6 680 0.0 T 14-09-2016 PAJ_RS07170 7147373ef646bb028d7c1a1bf5dce308 680 Gene3D G3DSA:1.20.1050.40 14 142 7.5E-18 T 14-09-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal PAJ_RS07170 7147373ef646bb028d7c1a1bf5dce308 680 SUPERFAMILY SSF55486 13 677 1.35E-164 T 14-09-2016 PAJ_RS07170 7147373ef646bb028d7c1a1bf5dce308 680 Gene3D G3DSA:1.10.1370.10 145 351 5.9E-109 T 14-09-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PAJ_RS07170 7147373ef646bb028d7c1a1bf5dce308 680 Gene3D G3DSA:1.10.1370.10 504 678 5.9E-109 T 14-09-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PAJ_RS07170 7147373ef646bb028d7c1a1bf5dce308 680 Gene3D G3DSA:3.40.390.10 361 503 8.5E-52 T 14-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 PAJ_RS07170 7147373ef646bb028d7c1a1bf5dce308 680 Pfam PF01432 Peptidase family M3 229 677 1.4E-133 T 14-09-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 PAJ_RS07170 7147373ef646bb028d7c1a1bf5dce308 680 PANTHER PTHR11804:SF47 6 680 0.0 T 14-09-2016 PAJ_RS08450 2378d63ca8d49509b353e472362446d1 186 SUPERFAMILY SSF54593 7 185 4.84E-64 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS08450 2378d63ca8d49509b353e472362446d1 186 Pfam PF06185 YecM protein 9 184 6.1E-71 T 14-09-2016 IPR010393 Protein of unknown function DUF991 PAJ_RS08450 2378d63ca8d49509b353e472362446d1 186 PANTHER PTHR37519 2 185 5.3E-90 T 14-09-2016 PAJ_RS08450 2378d63ca8d49509b353e472362446d1 186 Gene3D G3DSA:3.10.180.10 6 185 2.7E-74 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS08450 2378d63ca8d49509b353e472362446d1 186 PANTHER PTHR37519:SF1 2 185 5.3E-90 T 14-09-2016 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 Gene3D G3DSA:3.20.20.150 3 439 3.0E-208 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 4 437 3.7E-215 T 14-09-2016 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PANTHER PTHR32176:SF0 4 439 2.6E-256 T 14-09-2016 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 Hamap MF_00455 Xylose isomerase [xylA]. 11 437 52.785 T 14-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PRINTS PR00688 Xylose isomerase signature 300 311 2.8E-84 T 14-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PRINTS PR00688 Xylose isomerase signature 133 153 2.8E-84 T 14-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PRINTS PR00688 Xylose isomerase signature 180 201 2.8E-84 T 14-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PRINTS PR00688 Xylose isomerase signature 156 175 2.8E-84 T 14-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PRINTS PR00688 Xylose isomerase signature 271 298 2.8E-84 T 14-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PRINTS PR00688 Xylose isomerase signature 333 344 2.8E-84 T 14-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PRINTS PR00688 Xylose isomerase signature 92 114 2.8E-84 T 14-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PRINTS PR00688 Xylose isomerase signature 207 226 2.8E-84 T 14-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PRINTS PR00688 Xylose isomerase signature 229 253 2.8E-84 T 14-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 SUPERFAMILY SSF51658 4 439 1.55E-170 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS17715 627313e659fc6adc3126aa8bbc74ef68 440 PANTHER PTHR32176 4 439 2.6E-256 T 14-09-2016 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 6.8E-95 T 14-09-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 SUPERFAMILY SSF52029 185 376 1.4E-82 T 14-09-2016 IPR027409 GroEL-like apical domain PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 5.6E-257 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 Gene3D G3DSA:1.10.560.10 3 188 5.1E-47 T 14-09-2016 IPR027413 GroEL-like equatorial domain PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 SUPERFAMILY SSF48592 406 521 2.06E-77 T 14-09-2016 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 SUPERFAMILY SSF48592 7 134 2.06E-77 T 14-09-2016 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 PANTHER PTHR11353 2 549 1.1E-251 T 14-09-2016 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 Gene3D G3DSA:3.50.7.10 189 368 1.8E-98 T 14-09-2016 IPR027409 GroEL-like apical domain PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 SUPERFAMILY SSF54849 137 203 2.98E-24 T 14-09-2016 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 14-09-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 Gene3D G3DSA:1.10.560.10 369 518 3.4E-41 T 14-09-2016 IPR027413 GroEL-like equatorial domain PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 Hamap MF_00600 60 kDa chaperonin [groL]. 2 548 41.561 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PAJ_RS19625 f954a8fcf81c97898bc7f1f95d01fa85 549 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 SMART SM00490 250 331 9.8E-29 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 SUPERFAMILY SSF52540 12 199 9.26E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 Gene3D G3DSA:1.10.10.10 345 514 1.7E-58 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 15 463 2.5E-196 T 14-09-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 Gene3D G3DSA:3.40.50.300 206 344 2.3E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 Pfam PF00271 Helicase conserved C-terminal domain 226 331 7.5E-19 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 SUPERFAMILY SSF52540 208 454 3.45E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 SMART SM00341 531 608 5.8E-25 T 14-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 SMART SM00487 22 218 4.7E-29 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 SUPERFAMILY SSF47819 532 607 6.11E-26 T 14-09-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 Pfam PF09382 RQC domain 406 514 2.5E-36 T 14-09-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 Gene3D G3DSA:1.10.150.80 532 604 7.5E-23 T 14-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 PANTHER PTHR13710 13 608 6.6E-304 T 14-09-2016 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 Pfam PF00270 DEAD/DEAH box helicase 28 186 1.6E-19 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 13 604 4.6E-267 T 14-09-2016 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 SMART SM00956 411 514 2.1E-50 T 14-09-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 Pfam PF00570 HRDC domain 535 601 1.5E-23 T 14-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 Gene3D G3DSA:3.40.50.300 13 203 5.6E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 Pfam PF16124 RecQ zinc-binding 343 404 2.8E-15 T 14-09-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain PAJ_RS18450 2343dd8c1138debeaf506d29552c91e6 608 PANTHER PTHR13710:SF81 13 608 6.6E-304 T 14-09-2016 PAJ_RS03205 dc13f55bb38fc0cd784af6df88919592 181 SUPERFAMILY SSF51182 2 178 1.69E-44 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS03205 dc13f55bb38fc0cd784af6df88919592 181 Pfam PF05962 HutD 9 172 2.8E-45 T 14-09-2016 IPR010282 Uncharacterised protein family HutD/Ves PAJ_RS03205 dc13f55bb38fc0cd784af6df88919592 181 Gene3D G3DSA:2.60.120.10 9 113 3.5E-35 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS03205 dc13f55bb38fc0cd784af6df88919592 181 PANTHER PTHR37943:SF1 1 178 3.5E-40 T 14-09-2016 PAJ_RS03205 dc13f55bb38fc0cd784af6df88919592 181 PANTHER PTHR37943 1 178 3.5E-40 T 14-09-2016 PAJ_RS17790 862f080017867940ca8ccbf84707d479 62 Pfam PF14070 Putative motility protein 9 61 1.9E-9 T 14-09-2016 IPR025906 Putative motility protein PAJ_RS12680 6f168f599e1d8d10a5d8af26bfb13cd8 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.413 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12680 6f168f599e1d8d10a5d8af26bfb13cd8 115 PANTHER PTHR15680 1 114 1.4E-58 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12680 6f168f599e1d8d10a5d8af26bfb13cd8 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 2.3E-53 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12680 6f168f599e1d8d10a5d8af26bfb13cd8 115 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 14-09-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12680 6f168f599e1d8d10a5d8af26bfb13cd8 115 Pfam PF01245 Ribosomal protein L19 3 113 2.8E-50 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12680 6f168f599e1d8d10a5d8af26bfb13cd8 115 SUPERFAMILY SSF50104 2 114 5.82E-48 T 14-09-2016 IPR008991 Translation protein SH3-like domain PAJ_RS12680 6f168f599e1d8d10a5d8af26bfb13cd8 115 PIRSF PIRSF002191 1 115 1.5E-50 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12680 6f168f599e1d8d10a5d8af26bfb13cd8 115 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12680 6f168f599e1d8d10a5d8af26bfb13cd8 115 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS12680 6f168f599e1d8d10a5d8af26bfb13cd8 115 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 485 646 7.1E-48 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 301 313 - T 14-09-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 SUPERFAMILY SSF52540 168 425 3.0E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 SUPERFAMILY SSF81923 1 141 3.66E-58 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 Gene3D G3DSA:3.40.50.300 442 662 8.9E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 9.5E-15 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 Gene3D G3DSA:3.40.50.300 166 349 1.6E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 SMART SM00382 486 653 5.8E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 SMART SM00382 205 350 1.5E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 517 535 - T 14-09-2016 IPR028299 ClpA/B, conserved site 2 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 Gene3D G3DSA:1.10.1780.10 1 141 2.2E-45 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 652 732 1.9E-24 T 14-09-2016 IPR019489 Clp ATPase, C-terminal PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 PANTHER PTHR11638 1 754 0.0 T 14-09-2016 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 326 1.4E-12 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 SUPERFAMILY SSF52540 436 739 7.59E-77 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 Gene3D G3DSA:1.10.8.60 663 751 3.0E-31 T 14-09-2016 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 733 0.0 T 14-09-2016 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 Gene3D G3DSA:1.10.8.60 350 434 7.3E-31 T 14-09-2016 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 SMART SM01086 652 743 1.2E-35 T 14-09-2016 IPR019489 Clp ATPase, C-terminal PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 PANTHER PTHR11638:SF111 1 754 0.0 T 14-09-2016 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 490 508 4.8E-36 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 594 608 4.8E-36 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 532 550 4.8E-36 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS03540 1e03f897d1e694e59d6e749d50850157 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 561 579 4.8E-36 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 PAJ_RS04860 3d5009224af87491f9e7ac202e1fbb26 137 SUPERFAMILY SSF55729 9 137 5.57E-22 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS04860 3d5009224af87491f9e7ac202e1fbb26 137 Pfam PF13673 Acetyltransferase (GNAT) domain 45 117 7.6E-12 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS04860 3d5009224af87491f9e7ac202e1fbb26 137 Gene3D G3DSA:3.40.630.30 39 136 2.7E-24 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS04595 f0708cc62705f78a98bdd35906fc5540 116 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 14-09-2016 IPR019808 Histidine triad, conserved site PAJ_RS04595 f0708cc62705f78a98bdd35906fc5540 116 PRINTS PR00332 Histidine triad family signature 95 105 1.2E-19 T 14-09-2016 IPR001310 Histidine triad (HIT) protein PAJ_RS04595 f0708cc62705f78a98bdd35906fc5540 116 PRINTS PR00332 Histidine triad family signature 6 22 1.2E-19 T 14-09-2016 IPR001310 Histidine triad (HIT) protein PAJ_RS04595 f0708cc62705f78a98bdd35906fc5540 116 PRINTS PR00332 Histidine triad family signature 27 45 1.2E-19 T 14-09-2016 IPR001310 Histidine triad (HIT) protein PAJ_RS04595 f0708cc62705f78a98bdd35906fc5540 116 Gene3D G3DSA:3.30.428.10 3 110 4.0E-35 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 PAJ_RS04595 f0708cc62705f78a98bdd35906fc5540 116 Pfam PF01230 HIT domain 12 108 2.9E-29 T 14-09-2016 IPR001310 Histidine triad (HIT) protein PAJ_RS04595 f0708cc62705f78a98bdd35906fc5540 116 PANTHER PTHR23089:SF2 2 112 7.6E-49 T 14-09-2016 PAJ_RS04595 f0708cc62705f78a98bdd35906fc5540 116 SUPERFAMILY SSF54197 2 113 1.05E-33 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 PAJ_RS04595 f0708cc62705f78a98bdd35906fc5540 116 PANTHER PTHR23089 2 112 7.6E-49 T 14-09-2016 IPR001310 Histidine triad (HIT) protein PAJ_RS11010 f0d3421df7fc79c405330189043a9844 237 Gene3D G3DSA:3.20.20.190 2 234 1.5E-46 T 14-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 PAJ_RS11010 f0d3421df7fc79c405330189043a9844 237 SUPERFAMILY SSF51695 1 234 2.72E-52 T 14-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 PAJ_RS11010 f0d3421df7fc79c405330189043a9844 237 PANTHER PTHR23344:SF20 1 234 1.3E-39 T 14-09-2016 PAJ_RS11010 f0d3421df7fc79c405330189043a9844 237 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 7 154 2.1E-22 T 14-09-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 PAJ_RS11010 f0d3421df7fc79c405330189043a9844 237 PANTHER PTHR23344 1 234 1.3E-39 T 14-09-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 PAJ_RS08485 42740c4cb2e22ba39a6698041bbc6b1c 213 PANTHER PTHR22617 15 213 1.2E-116 T 14-09-2016 PAJ_RS08485 42740c4cb2e22ba39a6698041bbc6b1c 213 Pfam PF04344 Chemotaxis phosphatase, CheZ 15 213 2.8E-75 T 14-09-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- PAJ_RS08485 42740c4cb2e22ba39a6698041bbc6b1c 213 Gene3D G3DSA:1.20.5.590 1 33 2.8E-16 T 14-09-2016 PAJ_RS08485 42740c4cb2e22ba39a6698041bbc6b1c 213 Gene3D G3DSA:1.10.287.500 34 166 4.0E-55 T 14-09-2016 PAJ_RS08485 42740c4cb2e22ba39a6698041bbc6b1c 213 PANTHER PTHR22617:SF32 15 213 1.2E-116 T 14-09-2016 PAJ_RS08485 42740c4cb2e22ba39a6698041bbc6b1c 213 SUPERFAMILY SSF75708 9 212 3.53E-64 T 14-09-2016 PAJ_RS08485 42740c4cb2e22ba39a6698041bbc6b1c 213 PIRSF PIRSF002884 1 213 8.7E-85 T 14-09-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 Pfam PF00005 ABC transporter 273 427 9.1E-19 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 Pfam PF00005 ABC transporter 23 173 1.1E-22 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 SMART SM00382 31 221 3.5E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 SMART SM00382 282 470 6.1E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 PANTHER PTHR24220:SF308 8 382 2.4E-130 T 14-09-2016 PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 Gene3D G3DSA:3.40.50.300 269 490 5.3E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 Gene3D G3DSA:3.40.50.300 6 239 5.1E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 SUPERFAMILY SSF52540 268 483 4.84E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 SUPERFAMILY SSF52540 9 225 4.18E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01135 7ff661422b9c8a43ed3f043f148d1c6e 501 PANTHER PTHR24220 8 382 2.4E-130 T 14-09-2016 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 SMART SM00919 271 531 1.0E-134 T 14-09-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 PANTHER PTHR23406:SF25 1 565 0.0 T 14-09-2016 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 PANTHER PTHR23406 1 565 0.0 T 14-09-2016 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 Gene3D G3DSA:3.40.50.720 269 562 2.3E-108 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 SMART SM01274 81 261 2.8E-112 T 14-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 Gene3D G3DSA:3.40.50.10380 17 268 2.0E-118 T 14-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 Pfam PF03949 Malic enzyme, NAD binding domain 271 530 8.4E-103 T 14-09-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 Pfam PF00390 Malic enzyme, N-terminal domain 81 261 1.1E-80 T 14-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 565 71.427 T 14-09-2016 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 14-09-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 SUPERFAMILY SSF53223 6 270 7.19E-111 T 14-09-2016 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 SUPERFAMILY SSF51735 271 562 5.34E-94 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 PRINTS PR00072 Malic enzyme signature 267 283 8.7E-75 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 PRINTS PR00072 Malic enzyme signature 298 314 8.7E-75 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 PRINTS PR00072 Malic enzyme signature 87 111 8.7E-75 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 PRINTS PR00072 Malic enzyme signature 183 205 8.7E-75 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 PRINTS PR00072 Malic enzyme signature 242 260 8.7E-75 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 PRINTS PR00072 Malic enzyme signature 408 424 8.7E-75 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 PRINTS PR00072 Malic enzyme signature 147 176 8.7E-75 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 PAJ_RS10135 a6eb07b29aca509e91a88e66a5e6a4fb 565 PIRSF PIRSF000106 3 563 1.8E-228 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 PAJ_RS05090 62925ba9dd1da23b4564f942f395af2f 469 SUPERFAMILY SSF75304 4 459 2.49E-128 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS05090 62925ba9dd1da23b4564f942f395af2f 469 Gene3D G3DSA:3.90.1300.10 3 461 1.7E-130 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS05090 62925ba9dd1da23b4564f942f395af2f 469 Pfam PF01425 Amidase 26 449 7.5E-100 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS05090 62925ba9dd1da23b4564f942f395af2f 469 PANTHER PTHR11895 4 467 5.2E-139 T 14-09-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS05090 62925ba9dd1da23b4564f942f395af2f 469 ProSitePatterns PS00571 Amidases signature. 153 184 - T 14-09-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PAJ_RS14680 2c018b1905afd06aee3709df4d3ba601 385 SUPERFAMILY SSF69279 17 189 2.61E-22 T 14-09-2016 PAJ_RS14680 2c018b1905afd06aee3709df4d3ba601 385 Pfam PF05954 Phage late control gene D protein (GPD) 101 359 1.3E-23 T 14-09-2016 PAJ_RS16225 1b560d636e841da92a190863f2cfe64f 815 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 15 810 0.0 T 14-09-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS16225 1b560d636e841da92a190863f2cfe64f 815 SUPERFAMILY SSF53756 9 814 0.0 T 14-09-2016 PAJ_RS16225 1b560d636e841da92a190863f2cfe64f 815 Pfam PF00343 Carbohydrate phosphorylase 102 810 0.0 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS16225 1b560d636e841da92a190863f2cfe64f 815 PANTHER PTHR11468:SF3 14 815 0.0 T 14-09-2016 PAJ_RS16225 1b560d636e841da92a190863f2cfe64f 815 Gene3D G3DSA:3.40.50.2000 11 479 5.1E-209 T 14-09-2016 PAJ_RS16225 1b560d636e841da92a190863f2cfe64f 815 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 654 666 - T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS16225 1b560d636e841da92a190863f2cfe64f 815 PANTHER PTHR11468 14 815 0.0 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS16225 1b560d636e841da92a190863f2cfe64f 815 PIRSF PIRSF000460 1 815 2.3E-228 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PAJ_RS16225 1b560d636e841da92a190863f2cfe64f 815 Gene3D G3DSA:3.40.50.2000 480 795 1.2E-140 T 14-09-2016 PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 Pfam PF00557 Metallopeptidase family M24 12 242 3.3E-53 T 14-09-2016 IPR000994 Peptidase M24, structural domain PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 PANTHER PTHR10804:SF75 1 262 7.7E-185 T 14-09-2016 PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 Gene3D G3DSA:3.90.230.10 3 256 9.8E-101 T 14-09-2016 IPR000994 Peptidase M24, structural domain PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 2.1E-21 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 2.1E-21 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 2.1E-21 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 2.1E-21 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 SUPERFAMILY SSF55920 3 254 1.31E-92 T 14-09-2016 IPR000994 Peptidase M24, structural domain PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 43.331 T 14-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 PANTHER PTHR10804 1 262 7.7E-185 T 14-09-2016 PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 14-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 PAJ_RS00685 fd56514a6c69abc45dc07c6437f36941 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 250 6.2E-108 T 14-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 PAJ_RS12725 ca0c2cc384cd781b68e3fca0d6d427ba 142 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 43 122 0.006 T 14-09-2016 IPR020143 Uncharacterised protein family, RP436 PAJ_RS12725 ca0c2cc384cd781b68e3fca0d6d427ba 142 PANTHER PTHR30353:SF12 5 141 1.7E-48 T 14-09-2016 PAJ_RS12725 ca0c2cc384cd781b68e3fca0d6d427ba 142 PANTHER PTHR30353 5 141 1.7E-48 T 14-09-2016 IPR032818 DedA family PAJ_RS17205 fbc07cdacdcb80daf6afa09d5aeaeba4 398 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 14-09-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 PAJ_RS17205 fbc07cdacdcb80daf6afa09d5aeaeba4 398 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 395 52.926 T 14-09-2016 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|UniPathway: UPA00046 PAJ_RS17205 fbc07cdacdcb80daf6afa09d5aeaeba4 398 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 5 397 9.5E-212 T 14-09-2016 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|UniPathway: UPA00046 PAJ_RS17205 fbc07cdacdcb80daf6afa09d5aeaeba4 398 Gene3D G3DSA:3.90.1150.10 279 393 3.2E-35 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS17205 fbc07cdacdcb80daf6afa09d5aeaeba4 398 PANTHER PTHR13693:SF60 1 397 1.7E-256 T 14-09-2016 PAJ_RS17205 fbc07cdacdcb80daf6afa09d5aeaeba4 398 PANTHER PTHR13693 1 397 1.7E-256 T 14-09-2016 PAJ_RS17205 fbc07cdacdcb80daf6afa09d5aeaeba4 398 SUPERFAMILY SSF53383 4 396 3.2E-122 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS17205 fbc07cdacdcb80daf6afa09d5aeaeba4 398 Pfam PF00155 Aminotransferase class I and II 43 386 4.4E-76 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS17205 fbc07cdacdcb80daf6afa09d5aeaeba4 398 Gene3D G3DSA:3.40.640.10 61 278 2.4E-89 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 Gene3D G3DSA:3.40.47.10 142 183 6.9E-63 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 Gene3D G3DSA:3.40.47.10 268 386 6.9E-63 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 Gene3D G3DSA:3.40.47.10 184 267 4.0E-62 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 Gene3D G3DSA:3.40.47.10 4 126 4.0E-62 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 14-09-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 1.1E-81 T 14-09-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 14-09-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 2.5E-143 T 14-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 Pfam PF02803 Thiolase, C-terminal domain 261 386 1.0E-51 T 14-09-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 PANTHER PTHR18919:SF69 1 387 1.5E-200 T 14-09-2016 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 PANTHER PTHR18919 1 387 1.5E-200 T 14-09-2016 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 SUPERFAMILY SSF53901 1 259 1.97E-77 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 14-09-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 387 6.5E-225 T 14-09-2016 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 SUPERFAMILY SSF53901 262 386 2.88E-45 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 60.297 T 14-09-2016 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726|UniPathway: UPA00659 PAJ_RS18565 1683ce071c8db913751ad9895b84b552 387 PIRSF PIRSF000429 1 387 2.1E-131 T 14-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 357 379 1.5E-89 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 1.5E-89 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 1.5E-89 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.5E-89 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.5E-89 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.5E-89 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 173 4.8E-52 T 14-09-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 PANTHER PTHR11811:SF25 1 467 8.1E-301 T 14-09-2016 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 467 1.1E-129 T 14-09-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 Gene3D G3DSA:1.20.5.320 437 468 3.1E-22 T 14-09-2016 IPR012284 6-phosphogluconate dehydrogenase, domain 3 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 Gene3D G3DSA:1.10.1040.10 181 435 1.0E-115 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 14-09-2016 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 SUPERFAMILY SSF48179 177 468 1.23E-130 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 SUPERFAMILY SSF51735 4 172 8.57E-52 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 PIRSF PIRSF000109 1 469 4.5E-240 T 14-09-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 PANTHER PTHR11811 1 467 8.1E-301 T 14-09-2016 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 SMART SM01350 179 468 3.3E-219 T 14-09-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 468 6.3E-228 T 14-09-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PAJ_RS09850 c461b6bd01ce24d30883a0588cb7c101 469 Gene3D G3DSA:3.40.50.720 1 180 2.5E-61 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS15985 bf50661a967a6a05aeb38d31e2b365bc 338 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 240 281 - T 14-09-2016 IPR000952 AB hydrolase 4, conserved site KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- PAJ_RS15985 bf50661a967a6a05aeb38d31e2b365bc 338 PANTHER PTHR10794:SF46 18 337 2.4E-85 T 14-09-2016 PAJ_RS15985 bf50661a967a6a05aeb38d31e2b365bc 338 PIRSF PIRSF005211 16 338 1.4E-103 T 14-09-2016 IPR012020 AB hydrolase 4 family KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- PAJ_RS15985 bf50661a967a6a05aeb38d31e2b365bc 338 SUPERFAMILY SSF53474 45 319 1.1E-35 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS15985 bf50661a967a6a05aeb38d31e2b365bc 338 Gene3D G3DSA:3.40.50.1820 71 314 2.2E-25 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS15985 bf50661a967a6a05aeb38d31e2b365bc 338 Pfam PF00561 alpha/beta hydrolase fold 74 313 1.9E-15 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS15985 bf50661a967a6a05aeb38d31e2b365bc 338 PANTHER PTHR10794 18 337 2.4E-85 T 14-09-2016 PAJ_RS16620 c9e9b70f7ff095c576d546856a05e391 288 SUPERFAMILY SSF161098 4 275 5.7E-41 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16620 c9e9b70f7ff095c576d546856a05e391 288 Gene3D G3DSA:1.10.3720.10 3 273 3.9E-40 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16620 c9e9b70f7ff095c576d546856a05e391 288 PANTHER PTHR30193 1 287 9.9E-49 T 14-09-2016 PAJ_RS16620 c9e9b70f7ff095c576d546856a05e391 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 283 8.1E-11 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS02090 bf3d39a21eb8384e95535e2af1cf88be 563 Gene3D G3DSA:2.40.160.50 184 562 5.1E-116 T 14-09-2016 PAJ_RS02090 bf3d39a21eb8384e95535e2af1cf88be 563 Gene3D G3DSA:3.10.20.310 73 153 8.4E-23 T 14-09-2016 PAJ_RS02090 bf3d39a21eb8384e95535e2af1cf88be 563 PIRSF PIRSF029745 2 563 5.5E-148 T 14-09-2016 IPR027282 Two partner secretion pathway transporter GO:0015031 PAJ_RS02090 bf3d39a21eb8384e95535e2af1cf88be 563 PANTHER PTHR34597:SF2 28 563 4.9E-140 T 14-09-2016 PAJ_RS02090 bf3d39a21eb8384e95535e2af1cf88be 563 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 175 487 1.6E-25 T 14-09-2016 IPR005565 Haemolysin activator HlyB PAJ_RS02090 bf3d39a21eb8384e95535e2af1cf88be 563 Pfam PF08479 POTRA domain, ShlB-type 78 153 4.7E-17 T 14-09-2016 IPR013686 Polypeptide-transport-associated, ShlB-type PAJ_RS02090 bf3d39a21eb8384e95535e2af1cf88be 563 PANTHER PTHR34597 28 563 4.9E-140 T 14-09-2016 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 892 0.0 T 14-09-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 Pfam PF00330 Aconitase family (aconitate hydratase) 69 564 2.2E-181 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 Gene3D G3DSA:3.30.499.10 29 249 4.0E-79 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 SUPERFAMILY SSF53732 10 628 1.31E-220 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 Gene3D G3DSA:3.20.19.10 639 891 2.4E-82 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PANTHER PTHR11670:SF1 7 393 0.0 T 14-09-2016 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PANTHER PTHR11670:SF1 668 713 0.0 T 14-09-2016 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PANTHER PTHR11670:SF1 752 893 0.0 T 14-09-2016 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PANTHER PTHR11670 7 393 0.0 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PANTHER PTHR11670 668 713 0.0 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PANTHER PTHR11670 752 893 0.0 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PANTHER PTHR11670:SF1 418 652 0.0 T 14-09-2016 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 ProSitePatterns PS01244 Aconitase family signature 2. 495 508 - T 14-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 Gene3D G3DSA:3.40.1060.10 250 366 2.3E-35 T 14-09-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PANTHER PTHR11670 418 652 0.0 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 Pfam PF00694 Aconitase C-terminal domain 693 820 6.9E-49 T 14-09-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PRINTS PR00415 Aconitase family signature 495 508 2.5E-41 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PRINTS PR00415 Aconitase family signature 293 306 2.5E-41 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PRINTS PR00415 Aconitase family signature 146 159 2.5E-41 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PRINTS PR00415 Aconitase family signature 279 292 2.5E-41 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PRINTS PR00415 Aconitase family signature 170 178 2.5E-41 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PRINTS PR00415 Aconitase family signature 372 386 2.5E-41 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PRINTS PR00415 Aconitase family signature 433 444 2.5E-41 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PRINTS PR00415 Aconitase family signature 203 216 2.5E-41 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 PRINTS PR00415 Aconitase family signature 217 232 2.5E-41 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 ProSitePatterns PS00450 Aconitase family signature 1. 429 445 - T 14-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 SUPERFAMILY SSF52016 632 892 1.35E-90 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PAJ_RS07625 c77fd60e4736cefd78e37acce0fe7ae4 893 Gene3D G3DSA:3.30.499.10 369 577 1.6E-61 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PAJ_RS20500 2a506a7ffaae33cfd19786d78673a097 146 Pfam PF00583 Acetyltransferase (GNAT) family 66 126 9.7E-14 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS20500 2a506a7ffaae33cfd19786d78673a097 146 SUPERFAMILY SSF55729 2 131 1.08E-20 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS20500 2a506a7ffaae33cfd19786d78673a097 146 PANTHER PTHR23091 73 146 3.0E-12 T 14-09-2016 PAJ_RS20500 2a506a7ffaae33cfd19786d78673a097 146 Gene3D G3DSA:3.40.630.30 7 143 5.8E-21 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS19250 2456bfa8a97902ab38d837ca0e26ba03 443 SMART SM00710 190 211 1100.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat PAJ_RS19250 2456bfa8a97902ab38d837ca0e26ba03 443 SMART SM00710 163 189 1300.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat PAJ_RS19250 2456bfa8a97902ab38d837ca0e26ba03 443 SMART SM00710 249 270 64.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat PAJ_RS19250 2456bfa8a97902ab38d837ca0e26ba03 443 Pfam PF00295 Glycosyl hydrolases family 28 88 284 2.1E-23 T 14-09-2016 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 PAJ_RS19250 2456bfa8a97902ab38d837ca0e26ba03 443 Gene3D G3DSA:2.160.20.10 5 356 2.1E-73 T 14-09-2016 IPR012334 Pectin lyase fold PAJ_RS19250 2456bfa8a97902ab38d837ca0e26ba03 443 SUPERFAMILY SSF51126 11 297 3.93E-58 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS19250 2456bfa8a97902ab38d837ca0e26ba03 443 PANTHER PTHR31339 1 287 1.0E-70 T 14-09-2016 PAJ_RS19250 2456bfa8a97902ab38d837ca0e26ba03 443 PANTHER PTHR31339:SF0 1 287 1.0E-70 T 14-09-2016 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 SMART SM00342 21 104 1.8E-28 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 SUPERFAMILY SSF46689 58 107 4.26E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 Gene3D G3DSA:1.10.10.60 3 56 1.0E-20 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 SUPERFAMILY SSF46689 6 55 3.09E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 Pfam PF12833 Helix-turn-helix domain 28 105 1.1E-21 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 PANTHER PTHR11019:SF84 5 112 5.8E-42 T 14-09-2016 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 Gene3D G3DSA:1.10.10.60 58 109 5.0E-19 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 PANTHER PTHR11019 5 112 5.8E-42 T 14-09-2016 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 1.3E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS06490 dd2370169476e203e003c5b516ea036d 115 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 1.3E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS06985 b9c9a32f0bbbae0f616316b5ae72e171 178 Gene3D G3DSA:3.90.1720.10 48 165 5.5E-32 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS06985 b9c9a32f0bbbae0f616316b5ae72e171 178 PANTHER PTHR21666 12 163 1.6E-24 T 14-09-2016 PAJ_RS06985 b9c9a32f0bbbae0f616316b5ae72e171 178 SUPERFAMILY SSF54001 47 166 2.03E-31 T 14-09-2016 PAJ_RS06985 b9c9a32f0bbbae0f616316b5ae72e171 178 Pfam PF00877 NlpC/P60 family 60 163 5.7E-22 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS06120 d9101e191c55bebc7382c1bc3e6e7daf 281 PANTHER PTHR11019:SF109 130 270 3.5E-84 T 14-09-2016 PAJ_RS06120 d9101e191c55bebc7382c1bc3e6e7daf 281 PANTHER PTHR11019:SF109 3 112 3.5E-84 T 14-09-2016 PAJ_RS06120 d9101e191c55bebc7382c1bc3e6e7daf 281 PIRSF PIRSF037798 1 281 1.7E-132 T 14-09-2016 IPR017283 Molecular chaperone Hsp31 and glyoxalase 3 GO:0016829|GO:0042026 KEGG: 00620+4.2.1.130|MetaCyc: PWY-901 PAJ_RS06120 d9101e191c55bebc7382c1bc3e6e7daf 281 PANTHER PTHR11019 130 270 3.5E-84 T 14-09-2016 PAJ_RS06120 d9101e191c55bebc7382c1bc3e6e7daf 281 Gene3D G3DSA:3.40.50.880 4 278 6.9E-77 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS06120 d9101e191c55bebc7382c1bc3e6e7daf 281 PANTHER PTHR11019 3 112 3.5E-84 T 14-09-2016 PAJ_RS06120 d9101e191c55bebc7382c1bc3e6e7daf 281 SUPERFAMILY SSF52317 6 277 2.93E-54 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 SUPERFAMILY SSF53697 5 547 2.45E-225 T 14-09-2016 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 PANTHER PTHR11469 1 548 0.0 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 Gene3D G3DSA:3.40.50.10490 263 501 3.0E-179 T 14-09-2016 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 Gene3D G3DSA:3.40.50.10490 147 184 3.0E-179 T 14-09-2016 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 Gene3D G3DSA:3.40.50.10490 4 102 3.0E-179 T 14-09-2016 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 2.3E-55 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 2.3E-55 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 2.3E-55 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 2.3E-55 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 2.3E-55 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 2.3E-55 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 Gene3D G3DSA:1.10.1390.10 502 548 4.8E-22 T 14-09-2016 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 14-09-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 42.741 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 14-09-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 Pfam PF00342 Phosphoglucose isomerase 52 541 1.5E-254 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PAJ_RS18865 01ac86b60eb0710c7af7411410c26ea2 548 PANTHER PTHR11469:SF11 1 548 0.0 T 14-09-2016 PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 SMART SM00388 267 331 7.5E-4 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 Gene3D G3DSA:3.30.565.10 342 481 1.9E-31 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 Pfam PF08918 PhoQ Sensor 9 188 8.3E-86 T 14-09-2016 IPR015014 PhoQ Sensor GO:0000160|GO:0004673|GO:0005524|GO:0016020|GO:0018106|GO:0046872 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 PANTHER PTHR24423:SF496 55 137 6.6E-140 T 14-09-2016 PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 Pfam PF00672 HAMP domain 197 261 3.6E-8 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 SUPERFAMILY SSF47384 250 329 1.04E-5 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 376 478 2.0E-12 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 PANTHER PTHR24423 55 137 6.6E-140 T 14-09-2016 PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 PANTHER PTHR24423 209 488 6.6E-140 T 14-09-2016 PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 425 1.5E-7 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 460 1.5E-7 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 SMART SM00387 376 482 4.2E-24 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 SUPERFAMILY SSF55874 339 478 4.19E-31 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PAJ_RS04680 ebde835eec0fe52c9895b0a00c96e060 488 PANTHER PTHR24423:SF496 209 488 6.6E-140 T 14-09-2016 PAJ_RS02280 18836bbc93a44a09e98067b3ef5cd9ff 329 SUPERFAMILY SSF49401 192 327 1.14E-7 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS02280 18836bbc93a44a09e98067b3ef5cd9ff 329 Pfam PF00419 Fimbrial protein 190 268 4.9E-5 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS13240 adbd6a5b4bd069e7d3865fbcc88b2554 208 SUPERFAMILY SSF50494 26 205 5.81E-15 T 14-09-2016 IPR009003 Peptidase S1, PA clan PAJ_RS09630 454ca4f5bc6b8d4a0a1ac5ccf9ee0a96 104 TIGRFAM TIGR02625 YiiL_rotase: L-rhamnose mutarotase 3 103 4.8E-48 T 14-09-2016 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 UniPathway: UPA00125 PAJ_RS09630 454ca4f5bc6b8d4a0a1ac5ccf9ee0a96 104 PANTHER PTHR34389:SF2 1 103 1.1E-45 T 14-09-2016 PAJ_RS09630 454ca4f5bc6b8d4a0a1ac5ccf9ee0a96 104 Pfam PF05336 Domain of unknown function (DUF718) 3 98 7.7E-25 T 14-09-2016 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 UniPathway: UPA00125 PAJ_RS09630 454ca4f5bc6b8d4a0a1ac5ccf9ee0a96 104 PANTHER PTHR34389 1 103 1.1E-45 T 14-09-2016 PAJ_RS09630 454ca4f5bc6b8d4a0a1ac5ccf9ee0a96 104 SUPERFAMILY SSF54909 1 103 2.21E-33 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS09630 454ca4f5bc6b8d4a0a1ac5ccf9ee0a96 104 Hamap MF_01663 L-rhamnose mutarotase [rhaM]. 1 104 29.071 T 14-09-2016 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 UniPathway: UPA00125 PAJ_RS00025 4518d1cb11c535532a590444d84d54f1 317 Hamap MF_00492 Transaldolase [tal]. 2 317 51.89 T 14-09-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS00025 4518d1cb11c535532a590444d84d54f1 317 TIGRFAM TIGR00874 talAB: transaldolase 4 317 1.5E-165 T 14-09-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS00025 4518d1cb11c535532a590444d84d54f1 317 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 14-09-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS00025 4518d1cb11c535532a590444d84d54f1 317 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 14-09-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS00025 4518d1cb11c535532a590444d84d54f1 317 PANTHER PTHR10683 1 317 3.4E-182 T 14-09-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS00025 4518d1cb11c535532a590444d84d54f1 317 PANTHER PTHR10683:SF18 1 317 3.4E-182 T 14-09-2016 PAJ_RS00025 4518d1cb11c535532a590444d84d54f1 317 Gene3D G3DSA:3.20.20.70 3 315 1.1E-134 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS00025 4518d1cb11c535532a590444d84d54f1 317 SUPERFAMILY SSF51569 1 316 4.5E-117 T 14-09-2016 PAJ_RS00025 4518d1cb11c535532a590444d84d54f1 317 Pfam PF00923 Transaldolase 14 313 1.9E-103 T 14-09-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS16255 9e0372fa3c4f390b922f2614c327eacd 197 PANTHER PTHR33508:SF4 1 197 1.1E-89 T 14-09-2016 PAJ_RS16255 9e0372fa3c4f390b922f2614c327eacd 197 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 191 5.1E-30 T 14-09-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PAJ_RS16255 9e0372fa3c4f390b922f2614c327eacd 197 PANTHER PTHR33508 1 197 1.1E-89 T 14-09-2016 PAJ_RS16255 9e0372fa3c4f390b922f2614c327eacd 197 Pfam PF01914 MarC family integral membrane protein 2 193 1.5E-59 T 14-09-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PAJ_RS20845 f65e4c26fb676039363fbbc55fa3b982 410 SUPERFAMILY SSF103473 7 405 1.44E-53 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20845 f65e4c26fb676039363fbbc55fa3b982 410 ProSitePatterns PS00216 Sugar transport proteins signature 1. 71 87 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS20845 f65e4c26fb676039363fbbc55fa3b982 410 Pfam PF07690 Major Facilitator Superfamily 24 362 2.1E-33 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS20845 f65e4c26fb676039363fbbc55fa3b982 410 PANTHER PTHR23502:SF43 7 404 2.9E-170 T 14-09-2016 PAJ_RS20845 f65e4c26fb676039363fbbc55fa3b982 410 Gene3D G3DSA:1.20.1250.20 21 198 1.1E-24 T 14-09-2016 PAJ_RS20845 f65e4c26fb676039363fbbc55fa3b982 410 Gene3D G3DSA:1.20.1250.20 216 405 1.9E-10 T 14-09-2016 PAJ_RS20845 f65e4c26fb676039363fbbc55fa3b982 410 PANTHER PTHR23502 7 404 2.9E-170 T 14-09-2016 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 Gene3D G3DSA:3.30.1330.20 214 321 8.7E-47 T 14-09-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 172 8.1E-43 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 PRINTS PR00423 Cell division protein FtsZ signature 188 210 1.4E-51 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 PRINTS PR00423 Cell division protein FtsZ signature 97 117 1.4E-51 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 PRINTS PR00423 Cell division protein FtsZ signature 125 146 1.4E-51 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 PRINTS PR00423 Cell division protein FtsZ signature 211 232 1.4E-51 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 Pfam PF12327 FtsZ family, C-terminal domain 221 315 8.6E-37 T 14-09-2016 IPR024757 Cell division protein FtsZ, C-terminal PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 ProSitePatterns PS01134 FtsZ protein signature 1. 43 77 - T 14-09-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 Gene3D G3DSA:3.40.50.1440 13 213 8.6E-94 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 SUPERFAMILY SSF52490 12 207 1.28E-69 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 PANTHER PTHR30314:SF3 1 382 5.9E-209 T 14-09-2016 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 14-09-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 SMART SM00864 12 204 1.2E-113 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 PANTHER PTHR30314 1 382 5.9E-209 T 14-09-2016 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 8 374 38.16 T 14-09-2016 IPR000158 Cell division protein FtsZ GO:0005525 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 333 7.9E-142 T 14-09-2016 IPR000158 Cell division protein FtsZ GO:0005525 PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 SMART SM00865 206 324 8.3E-56 T 14-09-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain PAJ_RS00350 c1cc9c91dde628c002174451a95d1e84 384 SUPERFAMILY SSF55307 203 319 2.98E-42 T 14-09-2016 IPR008280 Tubulin/FtsZ, C-terminal PAJ_RS06800 514966f594f6504faec0d59a9bfbc63b 130 SUPERFAMILY SSF54593 1 124 6.79E-14 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS06800 514966f594f6504faec0d59a9bfbc63b 130 Gene3D G3DSA:3.10.180.10 11 123 1.7E-8 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 Pfam PF00842 Alanine racemase, C-terminal domain 232 353 6.0E-38 T 14-09-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 Gene3D G3DSA:2.40.37.10 208 353 6.2E-55 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 Hamap MF_01201 Alanine racemase. 2 356 33.602 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PRINTS PR00992 Alanine racemase signature 155 166 1.0E-71 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PRINTS PR00992 Alanine racemase signature 121 133 1.0E-71 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PRINTS PR00992 Alanine racemase signature 27 43 1.0E-71 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PRINTS PR00992 Alanine racemase signature 248 263 1.0E-71 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PRINTS PR00992 Alanine racemase signature 190 217 1.0E-71 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PRINTS PR00992 Alanine racemase signature 265 280 1.0E-71 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PRINTS PR00992 Alanine racemase signature 338 351 1.0E-71 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PRINTS PR00992 Alanine racemase signature 61 79 1.0E-71 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PRINTS PR00992 Alanine racemase signature 286 303 1.0E-71 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PANTHER PTHR30511 1 352 3.4E-138 T 14-09-2016 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 14-09-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 TIGRFAM TIGR00492 alr: alanine racemase 4 354 4.5E-124 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 SUPERFAMILY SSF51419 9 233 1.31E-64 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 SMART SM01005 232 356 1.0E-62 T 14-09-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 SUPERFAMILY SSF50621 228 353 3.38E-45 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 Gene3D G3DSA:3.20.20.10 12 207 1.4E-65 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 Pfam PF01168 Alanine racemase, N-terminal domain 9 217 1.1E-66 T 14-09-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS07985 b69a0b30fd50d915cee145d1a60c5e55 356 PANTHER PTHR30511:SF0 1 352 3.4E-138 T 14-09-2016 PAJ_RS07820 022085fe3c01a1a7720b20bbaa65432d 223 Pfam PF00265 Thymidine kinase 18 202 1.6E-61 T 14-09-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 PAJ_RS07820 022085fe3c01a1a7720b20bbaa65432d 223 PIRSF PIRSF035805 15 213 9.7E-57 T 14-09-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 PAJ_RS07820 022085fe3c01a1a7720b20bbaa65432d 223 SUPERFAMILY SSF52540 17 157 1.22E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07820 022085fe3c01a1a7720b20bbaa65432d 223 Gene3D G3DSA:3.30.60.20 158 207 2.5E-20 T 14-09-2016 PAJ_RS07820 022085fe3c01a1a7720b20bbaa65432d 223 SUPERFAMILY SSF57716 158 206 3.92E-17 T 14-09-2016 PAJ_RS07820 022085fe3c01a1a7720b20bbaa65432d 223 PANTHER PTHR11441 1 208 3.1E-82 T 14-09-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 PAJ_RS07820 022085fe3c01a1a7720b20bbaa65432d 223 Hamap MF_00124 Thymidine kinase [tdk]. 17 205 34.906 T 14-09-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 PAJ_RS07820 022085fe3c01a1a7720b20bbaa65432d 223 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 189 202 - T 14-09-2016 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 Pfam PF00271 Helicase conserved C-terminal domain 828 945 5.8E-13 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 Pfam PF00176 SNF2 family N-terminal domain 511 786 1.7E-38 T 14-09-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 SUPERFAMILY SSF52540 470 741 4.85E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 Gene3D G3DSA:3.40.50.300 492 588 1.5E-14 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 Gene3D G3DSA:3.40.50.300 620 708 1.5E-14 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 SMART SM00487 498 719 2.2E-13 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 SMART SM00490 856 945 3.3E-10 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 PANTHER PTHR10799 624 953 1.3E-77 T 14-09-2016 PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 PANTHER PTHR10799 485 599 1.3E-77 T 14-09-2016 PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 Gene3D G3DSA:3.40.50.300 821 949 5.8E-13 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20240 55869597f0ef85536ea533d6c3aa8ea0 1042 SUPERFAMILY SSF52540 754 989 1.43E-37 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04460 d519807d5d05abfb1f45fdf3f49df5d8 223 PANTHER PTHR30435 5 223 1.7E-51 T 14-09-2016 PAJ_RS04460 d519807d5d05abfb1f45fdf3f49df5d8 223 Pfam PF03963 Flagellar hook capping protein - N-terminal region 17 78 1.7E-22 T 14-09-2016 IPR005648 Flagellar hook capping protein PAJ_RS04460 d519807d5d05abfb1f45fdf3f49df5d8 223 PANTHER PTHR30435:SF15 5 223 1.7E-51 T 14-09-2016 PAJ_RS04460 d519807d5d05abfb1f45fdf3f49df5d8 223 Pfam PF13861 FlgD Tudor-like domain 86 220 7.9E-16 T 14-09-2016 IPR025963 FlgD Tudor-like domain PAJ_RS04460 d519807d5d05abfb1f45fdf3f49df5d8 223 Pfam PF13860 FlgD Ig-like domain 105 180 6.5E-23 T 14-09-2016 IPR025965 FlgD Ig-like domain PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 8 429 1.6E-165 T 14-09-2016 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 Pfam PF01189 16S rRNA methyltransferase RsmB/F 240 426 6.8E-74 T 14-09-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 SUPERFAMILY SSF53335 138 429 7.08E-77 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 Gene3D G3DSA:3.40.50.150 233 428 8.8E-59 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 PANTHER PTHR22807 32 429 1.7E-130 T 14-09-2016 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 316 327 - T 14-09-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 1.2E-31 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 411 428 1.2E-31 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 1.2E-31 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 1.2E-31 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 1.2E-31 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 Gene3D G3DSA:1.10.287.730 148 172 4.8E-16 T 14-09-2016 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 Gene3D G3DSA:3.30.70.1170 173 230 5.2E-23 T 14-09-2016 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 Gene3D G3DSA:1.10.940.10 3 147 9.7E-44 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 SUPERFAMILY SSF48013 6 149 4.74E-33 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 Pfam PF01029 NusB family 6 127 8.7E-23 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PAJ_RS15700 872d47cd9e53e5b37e8f1855b123d341 433 PANTHER PTHR22807:SF30 32 429 1.7E-130 T 14-09-2016 PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 6 534 1.1E-154 T 14-09-2016 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 SMART SM00382 365 550 5.3E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 Pfam PF00664 ABC transporter transmembrane region 23 287 2.0E-6 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 SUPERFAMILY SSF52540 333 572 2.01E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 Gene3D G3DSA:1.20.1560.10 7 327 3.5E-29 T 14-09-2016 PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 PANTHER PTHR24222 1 573 5.1E-233 T 14-09-2016 PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 Pfam PF00005 ABC transporter 356 503 1.0E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 Gene3D G3DSA:3.40.50.300 340 567 1.9E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 PANTHER PTHR24222:SF30 1 573 5.1E-233 T 14-09-2016 PAJ_RS03555 3a9e5ed1e8bab1e5bb600eb811f9629d 576 SUPERFAMILY SSF90123 7 322 6.41E-38 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS15055 f6590f339764ddc3d3b66ffec8afb8fc 442 PANTHER PTHR35334:SF1 1 442 0.0 T 14-09-2016 PAJ_RS15055 f6590f339764ddc3d3b66ffec8afb8fc 442 Pfam PF03222 Tryptophan/tyrosine permease family 28 405 9.5E-10 T 14-09-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 PAJ_RS15055 f6590f339764ddc3d3b66ffec8afb8fc 442 PANTHER PTHR35334 1 442 0.0 T 14-09-2016 PAJ_RS15055 f6590f339764ddc3d3b66ffec8afb8fc 442 TIGRFAM TIGR00814 stp: serine transporter 16 432 2.6E-165 T 14-09-2016 IPR004694 Hydroxy amino acid transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS15055 f6590f339764ddc3d3b66ffec8afb8fc 442 Hamap MF_01583 Threonine/serine transporter TdcC [tdcC]. 1 442 53.159 T 14-09-2016 IPR023726 Threonine/serine transporter TdcC GO:0015565|GO:0015826|GO:0016021|GO:0022889|GO:0032329 PAJ_RS09625 73668692ff45986bb231cd400589d7a3 100 Gene3D G3DSA:1.10.260.40 33 84 9.9E-11 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS09625 73668692ff45986bb231cd400589d7a3 100 Pfam PF13744 Helix-turn-helix domain 18 88 4.7E-10 T 14-09-2016 PAJ_RS09625 73668692ff45986bb231cd400589d7a3 100 SUPERFAMILY SSF47413 19 96 7.68E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS09625 73668692ff45986bb231cd400589d7a3 100 SMART SM00530 32 87 1.5E-4 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS20820 0bd7b805e5dca2372314a307b6447852 441 Pfam PF07690 Major Facilitator Superfamily 44 375 1.1E-18 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS20820 0bd7b805e5dca2372314a307b6447852 441 SUPERFAMILY SSF103473 201 430 4.32E-36 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20820 0bd7b805e5dca2372314a307b6447852 441 SUPERFAMILY SSF103473 21 170 4.32E-36 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20820 0bd7b805e5dca2372314a307b6447852 441 PANTHER PTHR23514 197 428 5.8E-186 T 14-09-2016 PAJ_RS20820 0bd7b805e5dca2372314a307b6447852 441 PANTHER PTHR23514 4 179 5.8E-186 T 14-09-2016 PAJ_RS20820 0bd7b805e5dca2372314a307b6447852 441 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 20 418 9.3E-97 T 14-09-2016 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 PAJ_RS20820 0bd7b805e5dca2372314a307b6447852 441 Gene3D G3DSA:1.20.1250.20 22 228 6.3E-12 T 14-09-2016 PAJ_RS20820 0bd7b805e5dca2372314a307b6447852 441 Gene3D G3DSA:1.20.1250.20 247 429 2.2E-12 T 14-09-2016 PAJ_RS20820 0bd7b805e5dca2372314a307b6447852 441 PANTHER PTHR23514:SF11 197 428 5.8E-186 T 14-09-2016 PAJ_RS20820 0bd7b805e5dca2372314a307b6447852 441 PANTHER PTHR23514:SF11 4 179 5.8E-186 T 14-09-2016 PAJ_RS19455 9ef23e63b3b5bb993c52ee4ea0370d53 276 Gene3D G3DSA:2.120.10.30 5 275 1.1E-65 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like PAJ_RS19455 9ef23e63b3b5bb993c52ee4ea0370d53 276 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 210 227 4.4E-7 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS19455 9ef23e63b3b5bb993c52ee4ea0370d53 276 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 13 30 4.4E-7 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS19455 9ef23e63b3b5bb993c52ee4ea0370d53 276 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 143 165 4.4E-7 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS19455 9ef23e63b3b5bb993c52ee4ea0370d53 276 SUPERFAMILY SSF63829 3 275 1.74E-60 T 14-09-2016 PAJ_RS19455 9ef23e63b3b5bb993c52ee4ea0370d53 276 PANTHER PTHR10907 10 275 5.4E-69 T 14-09-2016 PAJ_RS19455 9ef23e63b3b5bb993c52ee4ea0370d53 276 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 12 266 4.3E-49 T 14-09-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region PAJ_RS19455 9ef23e63b3b5bb993c52ee4ea0370d53 276 PANTHER PTHR10907:SF47 10 275 5.4E-69 T 14-09-2016 PAJ_RS02500 a2af9babcab81856688c66fa94086079 298 SMART SM00062 37 269 5.5E-67 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS02500 a2af9babcab81856688c66fa94086079 298 Gene3D G3DSA:3.40.190.10 34 122 5.3E-29 T 14-09-2016 PAJ_RS02500 a2af9babcab81856688c66fa94086079 298 Gene3D G3DSA:3.40.190.10 230 272 5.3E-29 T 14-09-2016 PAJ_RS02500 a2af9babcab81856688c66fa94086079 298 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 267 1.2E-46 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS02500 a2af9babcab81856688c66fa94086079 298 PANTHER PTHR30085 1 296 1.1E-135 T 14-09-2016 PAJ_RS02500 a2af9babcab81856688c66fa94086079 298 SUPERFAMILY SSF53850 6 270 5.25E-64 T 14-09-2016 PAJ_RS02500 a2af9babcab81856688c66fa94086079 298 Gene3D G3DSA:3.40.190.10 123 229 1.0E-31 T 14-09-2016 PAJ_RS02500 a2af9babcab81856688c66fa94086079 298 PANTHER PTHR30085:SF2 1 296 1.1E-135 T 14-09-2016 PAJ_RS11225 f1bcc0e85c6d0204110b3dbc10edf105 274 Pfam PF13276 HTH-like domain 33 88 2.0E-15 T 14-09-2016 IPR025948 HTH-like domain PAJ_RS11225 f1bcc0e85c6d0204110b3dbc10edf105 274 SUPERFAMILY SSF53098 97 259 1.52E-41 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS11225 f1bcc0e85c6d0204110b3dbc10edf105 274 Gene3D G3DSA:3.30.420.10 98 254 1.0E-41 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS11225 f1bcc0e85c6d0204110b3dbc10edf105 274 PANTHER PTHR32552:SF35 1 256 1.0E-132 T 14-09-2016 PAJ_RS11225 f1bcc0e85c6d0204110b3dbc10edf105 274 PANTHER PTHR32552 1 256 1.0E-132 T 14-09-2016 PAJ_RS11225 f1bcc0e85c6d0204110b3dbc10edf105 274 Pfam PF13683 Integrase core domain 187 253 1.8E-32 T 14-09-2016 IPR001584 Integrase, catalytic core GO:0015074 PAJ_RS02970 eee700295d3178a4d84e50a1e3e88010 240 PANTHER PTHR24220 3 230 1.6E-89 T 14-09-2016 PAJ_RS02970 eee700295d3178a4d84e50a1e3e88010 240 Gene3D G3DSA:3.40.50.300 1 230 1.5E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02970 eee700295d3178a4d84e50a1e3e88010 240 SMART SM00382 26 218 9.9E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS02970 eee700295d3178a4d84e50a1e3e88010 240 Pfam PF00005 ABC transporter 19 168 5.7E-22 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS02970 eee700295d3178a4d84e50a1e3e88010 240 PANTHER PTHR24220:SF404 3 230 1.6E-89 T 14-09-2016 PAJ_RS02970 eee700295d3178a4d84e50a1e3e88010 240 SUPERFAMILY SSF52540 2 229 4.12E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15160 ca9c8c0e68396e6d7cfbdb80d044f8e4 464 Pfam PF13347 MFS/sugar transport protein 24 447 1.9E-78 T 14-09-2016 PAJ_RS15160 ca9c8c0e68396e6d7cfbdb80d044f8e4 464 PANTHER PTHR11328 11 464 0.0 T 14-09-2016 PAJ_RS15160 ca9c8c0e68396e6d7cfbdb80d044f8e4 464 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 22 460 4.9E-154 T 14-09-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 PAJ_RS15160 ca9c8c0e68396e6d7cfbdb80d044f8e4 464 Gene3D G3DSA:1.20.1250.20 244 447 1.2E-14 T 14-09-2016 PAJ_RS15160 ca9c8c0e68396e6d7cfbdb80d044f8e4 464 Gene3D G3DSA:1.20.1250.20 33 213 1.1E-4 T 14-09-2016 PAJ_RS15160 ca9c8c0e68396e6d7cfbdb80d044f8e4 464 PANTHER PTHR11328:SF39 11 464 0.0 T 14-09-2016 PAJ_RS15160 ca9c8c0e68396e6d7cfbdb80d044f8e4 464 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 73 100 - T 14-09-2016 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 PAJ_RS15160 ca9c8c0e68396e6d7cfbdb80d044f8e4 464 SUPERFAMILY SSF103473 25 449 3.4E-29 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS12130 42afb1b6a420854c924cf31940c56069 160 SUPERFAMILY SSF74982 8 138 6.41E-49 T 14-09-2016 IPR023620 Small protein B PAJ_RS12130 42afb1b6a420854c924cf31940c56069 160 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 14-09-2016 IPR020081 SsrA-binding protein, conserved site PAJ_RS12130 42afb1b6a420854c924cf31940c56069 160 Pfam PF01668 SmpB protein 13 74 8.9E-27 T 14-09-2016 IPR000037 SsrA-binding protein GO:0003723 PAJ_RS12130 42afb1b6a420854c924cf31940c56069 160 PANTHER PTHR30308 1 160 3.5E-81 T 14-09-2016 PAJ_RS12130 42afb1b6a420854c924cf31940c56069 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 2.0E-63 T 14-09-2016 IPR000037 SsrA-binding protein GO:0003723 PAJ_RS12130 42afb1b6a420854c924cf31940c56069 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 1.4E-52 T 14-09-2016 IPR000037 SsrA-binding protein GO:0003723 PAJ_RS12130 42afb1b6a420854c924cf31940c56069 160 PANTHER PTHR30308:SF2 1 160 3.5E-81 T 14-09-2016 PAJ_RS12130 42afb1b6a420854c924cf31940c56069 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 160 70.667 T 14-09-2016 IPR000037 SsrA-binding protein GO:0003723 PAJ_RS12130 42afb1b6a420854c924cf31940c56069 160 Gene3D G3DSA:2.40.280.10 13 133 1.0E-47 T 14-09-2016 IPR023620 Small protein B PAJ_RS01580 1fa1d7c2a3133aaa28bc0888a88a6b46 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 5.3E-76 T 14-09-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 PAJ_RS01580 1fa1d7c2a3133aaa28bc0888a88a6b46 149 PANTHER PTHR30455:SF2 2 149 1.5E-74 T 14-09-2016 PAJ_RS01580 1fa1d7c2a3133aaa28bc0888a88a6b46 149 PANTHER PTHR30455 2 149 1.5E-74 T 14-09-2016 PAJ_RS01580 1fa1d7c2a3133aaa28bc0888a88a6b46 149 Pfam PF03477 ATP cone domain 50 136 7.2E-15 T 14-09-2016 IPR005144 ATP-cone domain PAJ_RS01580 1fa1d7c2a3133aaa28bc0888a88a6b46 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 89.345 T 14-09-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 PAJ_RS12960 af3d2a3433f13cf2105468f9cbd32669 157 Pfam PF07670 Nucleoside recognition 86 150 4.2E-7 T 14-09-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 393 3.7E-14 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 Pfam PF08245 Mur ligase middle domain 106 293 1.1E-47 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 SUPERFAMILY SSF53623 100 310 5.89E-59 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 Gene3D G3DSA:3.40.1190.10 82 310 2.8E-77 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 Gene3D G3DSA:3.40.1390.10 1 80 1.6E-26 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 446 3.0E-139 T 14-09-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 PANTHER PTHR23135 11 448 7.7E-166 T 14-09-2016 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 SUPERFAMILY SSF53244 313 446 6.41E-36 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 447 33.573 T 14-09-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 SUPERFAMILY SSF63418 1 97 1.57E-27 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 PANTHER PTHR23135:SF3 11 448 7.7E-166 T 14-09-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 Pfam PF01225 Mur ligase family, catalytic domain 27 89 1.2E-9 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00305 5ed385f993d3bad0c6e0ac942b669933 452 Gene3D G3DSA:3.90.190.20 313 449 4.2E-42 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS20545 41fddff5f1ea2035f14496bdf72d1a5b 454 TIGRFAM TIGR00908 2A0305: ethanolamine permease 1 441 1.9E-185 T 14-09-2016 IPR004757 Ethanolamine permease PAJ_RS20545 41fddff5f1ea2035f14496bdf72d1a5b 454 PANTHER PTHR11785 5 441 5.4E-144 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS20545 41fddff5f1ea2035f14496bdf72d1a5b 454 PIRSF PIRSF006060 1 445 1.3E-68 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS20545 41fddff5f1ea2035f14496bdf72d1a5b 454 Pfam PF13520 Amino acid permease 9 419 3.5E-43 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS20545 41fddff5f1ea2035f14496bdf72d1a5b 454 PANTHER PTHR11785:SF337 5 441 5.4E-144 T 14-09-2016 PAJ_RS12140 aa29d6b6e73ccb8defa543e2d38a1007 423 SUPERFAMILY SSF56349 123 407 5.89E-53 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PAJ_RS12140 aa29d6b6e73ccb8defa543e2d38a1007 423 PANTHER PTHR30629 16 415 3.2E-142 T 14-09-2016 PAJ_RS12140 aa29d6b6e73ccb8defa543e2d38a1007 423 Pfam PF13356 Domain of unknown function (DUF4102) 22 108 8.6E-15 T 14-09-2016 IPR025166 Domain of unknown function DUF4102 PAJ_RS12140 aa29d6b6e73ccb8defa543e2d38a1007 423 Pfam PF00589 Phage integrase family 233 396 4.1E-17 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS12140 aa29d6b6e73ccb8defa543e2d38a1007 423 Gene3D G3DSA:1.10.150.130 123 221 9.5E-18 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal PAJ_RS12140 aa29d6b6e73ccb8defa543e2d38a1007 423 PANTHER PTHR30629:SF2 16 415 3.2E-142 T 14-09-2016 PAJ_RS12140 aa29d6b6e73ccb8defa543e2d38a1007 423 Gene3D G3DSA:1.10.443.10 233 398 2.0E-17 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS09685 649f9e226464dec52457ae797824017e 160 Pfam PF05638 Type VI secretion system effector, Hcp 6 128 1.6E-34 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS09685 649f9e226464dec52457ae797824017e 160 PANTHER PTHR36152 1 160 3.3E-42 T 14-09-2016 PAJ_RS09685 649f9e226464dec52457ae797824017e 160 SUPERFAMILY SSF141452 2 159 2.22E-47 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS09685 649f9e226464dec52457ae797824017e 160 PANTHER PTHR36152:SF1 1 160 3.3E-42 T 14-09-2016 PAJ_RS09685 649f9e226464dec52457ae797824017e 160 Gene3D G3DSA:2.30.110.20 1 159 2.4E-59 T 14-09-2016 IPR008514 Type VI secretion system effector, Hcp PAJ_RS07560 a3e91d9e07213937b38128663bbf7c40 688 Pfam PF02554 Carbon starvation protein CstA 32 409 2.7E-170 T 14-09-2016 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 PAJ_RS07560 a3e91d9e07213937b38128663bbf7c40 688 PANTHER PTHR30252 5 684 0.0 T 14-09-2016 PAJ_RS07560 a3e91d9e07213937b38128663bbf7c40 688 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 463 591 2.4E-32 T 14-09-2016 IPR025299 CstA, C-terminal domain PAJ_RS07560 a3e91d9e07213937b38128663bbf7c40 688 PANTHER PTHR30252:SF2 5 684 0.0 T 14-09-2016 PAJ_RS09515 59e250ac5d22791167f047f89d3d039c 222 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 7 200 6.9E-48 T 14-09-2016 IPR006328 Haloacid dehalogenase, type II GO:0008152|GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 PAJ_RS09515 59e250ac5d22791167f047f89d3d039c 222 PANTHER PTHR12725 1 199 2.9E-15 T 14-09-2016 PAJ_RS09515 59e250ac5d22791167f047f89d3d039c 222 Gene3D G3DSA:3.40.50.1000 86 210 4.6E-23 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS09515 59e250ac5d22791167f047f89d3d039c 222 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 9 183 1.8E-14 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS09515 59e250ac5d22791167f047f89d3d039c 222 SUPERFAMILY SSF56784 5 220 2.34E-37 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS09515 59e250ac5d22791167f047f89d3d039c 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 86 189 1.1E-7 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS20410 863104c09b824348c94aa2322f8d42e0 277 SUPERFAMILY SSF69593 5 245 6.67E-28 T 14-09-2016 PAJ_RS20410 863104c09b824348c94aa2322f8d42e0 277 Pfam PF01553 Acyltransferase 83 195 2.5E-16 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PAJ_RS20410 863104c09b824348c94aa2322f8d42e0 277 PANTHER PTHR10434:SF11 54 261 1.8E-18 T 14-09-2016 PAJ_RS20410 863104c09b824348c94aa2322f8d42e0 277 SMART SM00563 96 206 3.1E-18 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PAJ_RS20410 863104c09b824348c94aa2322f8d42e0 277 Gene3D G3DSA:3.40.1130.10 85 199 1.2E-9 T 14-09-2016 PAJ_RS20410 863104c09b824348c94aa2322f8d42e0 277 PANTHER PTHR10434 54 261 1.8E-18 T 14-09-2016 PAJ_RS20450 a2d3ab7895de5b19e6d20aee2ff54f55 201 Gene3D G3DSA:2.50.20.10 20 187 1.6E-16 T 14-09-2016 PAJ_RS20450 a2d3ab7895de5b19e6d20aee2ff54f55 201 SUPERFAMILY SSF89392 20 187 6.28E-24 T 14-09-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX PAJ_RS20450 a2d3ab7895de5b19e6d20aee2ff54f55 201 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 33 187 4.1E-12 T 14-09-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like PAJ_RS14535 e680e45df90f81b8008339a9e18a867e 275 SUPERFAMILY SSF56300 16 271 3.21E-56 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS14535 e680e45df90f81b8008339a9e18a867e 275 PANTHER PTHR12905 51 275 5.4E-109 T 14-09-2016 PAJ_RS14535 e680e45df90f81b8008339a9e18a867e 275 PANTHER PTHR12905:SF7 6 35 5.4E-109 T 14-09-2016 PAJ_RS14535 e680e45df90f81b8008339a9e18a867e 275 Gene3D G3DSA:3.60.21.10 15 262 5.9E-37 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS14535 e680e45df90f81b8008339a9e18a867e 275 PANTHER PTHR12905:SF7 51 275 5.4E-109 T 14-09-2016 PAJ_RS14535 e680e45df90f81b8008339a9e18a867e 275 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 15 261 40.255 T 14-09-2016 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 PAJ_RS14535 e680e45df90f81b8008339a9e18a867e 275 Pfam PF00149 Calcineurin-like phosphoesterase 16 206 4.3E-17 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PAJ_RS14535 e680e45df90f81b8008339a9e18a867e 275 PANTHER PTHR12905 6 35 5.4E-109 T 14-09-2016 PAJ_RS14535 e680e45df90f81b8008339a9e18a867e 275 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 261 3.0E-19 T 14-09-2016 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 PAJ_RS08200 c57e69543ce38953e902e2bc34b0b258 676 PANTHER PTHR30047:SF6 6 672 0.0 T 14-09-2016 PAJ_RS08200 c57e69543ce38953e902e2bc34b0b258 676 PANTHER PTHR30047 6 672 0.0 T 14-09-2016 PAJ_RS08200 c57e69543ce38953e902e2bc34b0b258 676 ProSitePatterns PS01303 BCCT family of transporters signature. 317 326 - T 14-09-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 PAJ_RS08200 c57e69543ce38953e902e2bc34b0b258 676 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 16 500 7.1E-179 T 14-09-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PAJ_RS08200 c57e69543ce38953e902e2bc34b0b258 676 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 54 502 1.2E-179 T 14-09-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PAJ_RS19415 a2daee93bf02f5bef47263234a7b495e 232 SUPERFAMILY SSF53639 5 224 2.94E-66 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS19415 a2daee93bf02f5bef47263234a7b495e 232 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 197 8.3E-46 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS19415 a2daee93bf02f5bef47263234a7b495e 232 PANTHER PTHR22789:SF7 6 232 1.7E-150 T 14-09-2016 PAJ_RS19415 a2daee93bf02f5bef47263234a7b495e 232 SMART SM01007 8 199 6.8E-66 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS19415 a2daee93bf02f5bef47263234a7b495e 232 Gene3D G3DSA:3.40.225.10 6 232 1.8E-70 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS19415 a2daee93bf02f5bef47263234a7b495e 232 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 4 232 3.2E-124 T 14-09-2016 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 PAJ_RS19415 a2daee93bf02f5bef47263234a7b495e 232 PANTHER PTHR22789 6 232 1.7E-150 T 14-09-2016 PAJ_RS02205 48f2d66aa8b1f614c73754900ae68198 473 PANTHER PTHR36120 5 471 3.1E-192 T 14-09-2016 PAJ_RS02205 48f2d66aa8b1f614c73754900ae68198 473 PANTHER PTHR36120:SF1 5 471 3.1E-192 T 14-09-2016 PAJ_RS02205 48f2d66aa8b1f614c73754900ae68198 473 SUPERFAMILY SSF53743 7 325 1.83E-56 T 14-09-2016 IPR009015 L-fucose isomerase, N-terminal/central domain GO:0005737|GO:0005996|GO:0016861 PAJ_RS02205 48f2d66aa8b1f614c73754900ae68198 473 Pfam PF02952 L-fucose isomerase, C-terminal domain 343 467 7.7E-31 T 14-09-2016 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25|UniPathway: UPA00563 PAJ_RS02285 7959541418dcca188d89e84a07af60b8 220 Gene3D G3DSA:3.20.20.450 10 204 2.9E-9 T 14-09-2016 IPR001633 EAL domain PAJ_RS02285 7959541418dcca188d89e84a07af60b8 220 SUPERFAMILY SSF141868 8 204 7.19E-20 T 14-09-2016 IPR001633 EAL domain PAJ_RS02285 7959541418dcca188d89e84a07af60b8 220 Pfam PF00563 EAL domain 8 204 9.7E-12 T 14-09-2016 IPR001633 EAL domain PAJ_RS09415 46e0fcd1ba3e28aaf9766454d14ca16b 253 PANTHER PTHR24220:SF554 9 253 1.9E-140 T 14-09-2016 PAJ_RS09415 46e0fcd1ba3e28aaf9766454d14ca16b 253 Pfam PF00005 ABC transporter 24 175 4.2E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09415 46e0fcd1ba3e28aaf9766454d14ca16b 253 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 5 252 3.0E-120 T 14-09-2016 IPR012700 Phosphonate C-P lyase system, PhnK PAJ_RS09415 46e0fcd1ba3e28aaf9766454d14ca16b 253 PIRSF PIRSF037116 1 253 3.4E-139 T 14-09-2016 IPR012700 Phosphonate C-P lyase system, PhnK PAJ_RS09415 46e0fcd1ba3e28aaf9766454d14ca16b 253 PANTHER PTHR24220 9 253 1.9E-140 T 14-09-2016 PAJ_RS09415 46e0fcd1ba3e28aaf9766454d14ca16b 253 SMART SM00382 32 225 1.1E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09415 46e0fcd1ba3e28aaf9766454d14ca16b 253 SUPERFAMILY SSF52540 4 250 5.23E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09415 46e0fcd1ba3e28aaf9766454d14ca16b 253 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS09415 46e0fcd1ba3e28aaf9766454d14ca16b 253 Gene3D G3DSA:3.40.50.300 6 249 9.2E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20140 4d4e027f1aa62bd532b87298dd03ce58 336 PANTHER PTHR32196:SF21 29 323 3.7E-89 T 14-09-2016 PAJ_RS20140 4d4e027f1aa62bd532b87298dd03ce58 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 319 5.1E-46 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS20140 4d4e027f1aa62bd532b87298dd03ce58 336 PANTHER PTHR32196 29 323 3.7E-89 T 14-09-2016 PAJ_RS16175 e5bc99fa639e48161220e024450f52f1 258 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 4 254 46.448 T 14-09-2016 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519|UniPathway: UPA00078 PAJ_RS16175 e5bc99fa639e48161220e024450f52f1 258 SUPERFAMILY SSF53474 4 255 3.43E-50 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS16175 e5bc99fa639e48161220e024450f52f1 258 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 10 253 2.2E-102 T 14-09-2016 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519|UniPathway: UPA00078 PAJ_RS16175 e5bc99fa639e48161220e024450f52f1 258 Pfam PF00561 alpha/beta hydrolase fold 16 242 2.2E-21 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS16175 e5bc99fa639e48161220e024450f52f1 258 PANTHER PTHR10992:SF812 4 255 4.2E-115 T 14-09-2016 PAJ_RS16175 e5bc99fa639e48161220e024450f52f1 258 PANTHER PTHR10992 4 255 4.2E-115 T 14-09-2016 PAJ_RS16175 e5bc99fa639e48161220e024450f52f1 258 Gene3D G3DSA:3.40.50.1820 4 255 8.7E-55 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 Gene3D G3DSA:3.40.50.720 2 232 2.9E-62 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 2.7E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.7E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 2.7E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 2.7E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 2.7E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 2.7E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PANTHER PTHR24322 5 131 5.3E-88 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 2.2E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 2.2E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 2.2E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 SUPERFAMILY SSF51735 3 231 4.37E-61 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PANTHER PTHR24322:SF392 5 131 5.3E-88 T 14-09-2016 PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PANTHER PTHR24322:SF392 147 179 5.3E-88 T 14-09-2016 PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 PANTHER PTHR24322 147 179 5.3E-88 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS07195 056cfad2536d2710376c536d4eff1c44 248 Pfam PF00106 short chain dehydrogenase 2 187 1.3E-52 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS13660 795a02ef9497d37edd9e1f4ccc930abb 54 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 10 30 2.1E-9 T 14-09-2016 IPR019626 Stress-induced protein, KGG, repeat PAJ_RS13660 795a02ef9497d37edd9e1f4ccc930abb 54 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 32 51 3.6E-7 T 14-09-2016 IPR019626 Stress-induced protein, KGG, repeat PAJ_RS13660 795a02ef9497d37edd9e1f4ccc930abb 54 PANTHER PTHR36569:SF4 1 53 4.3E-24 T 14-09-2016 PAJ_RS13660 795a02ef9497d37edd9e1f4ccc930abb 54 PANTHER PTHR36569 1 53 4.3E-24 T 14-09-2016 PAJ_RS14935 1513e9f27efef69f82d53bb5505fef86 269 PANTHER PTHR31284:SF10 223 239 8.7E-63 T 14-09-2016 PAJ_RS14935 1513e9f27efef69f82d53bb5505fef86 269 PANTHER PTHR31284:SF10 39 204 8.7E-63 T 14-09-2016 PAJ_RS14935 1513e9f27efef69f82d53bb5505fef86 269 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 27 239 1.9E-60 T 14-09-2016 IPR005519 Acid phosphatase, class B-like PAJ_RS14935 1513e9f27efef69f82d53bb5505fef86 269 SUPERFAMILY SSF56784 53 247 2.4E-42 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS14935 1513e9f27efef69f82d53bb5505fef86 269 PIRSF PIRSF019271 1 269 1.2E-101 T 14-09-2016 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 PAJ_RS14935 1513e9f27efef69f82d53bb5505fef86 269 Gene3D G3DSA:3.40.50.1000 42 246 8.5E-47 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS14935 1513e9f27efef69f82d53bb5505fef86 269 PANTHER PTHR31284 223 239 8.7E-63 T 14-09-2016 PAJ_RS14935 1513e9f27efef69f82d53bb5505fef86 269 PANTHER PTHR31284 39 204 8.7E-63 T 14-09-2016 PAJ_RS14935 1513e9f27efef69f82d53bb5505fef86 269 TIGRFAM TIGR01533 lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family 3 266 2.3E-87 T 14-09-2016 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 PAJ_RS16545 558e73b0b8fa7ef5f6c4faddbc29704c 316 PANTHER PTHR24220 7 308 2.4E-125 T 14-09-2016 PAJ_RS16545 558e73b0b8fa7ef5f6c4faddbc29704c 316 SUPERFAMILY SSF52540 5 246 5.83E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16545 558e73b0b8fa7ef5f6c4faddbc29704c 316 Gene3D G3DSA:3.40.50.300 4 249 7.7E-78 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16545 558e73b0b8fa7ef5f6c4faddbc29704c 316 Pfam PF00005 ABC transporter 32 176 5.1E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS16545 558e73b0b8fa7ef5f6c4faddbc29704c 316 PANTHER PTHR24220:SF336 7 308 2.4E-125 T 14-09-2016 PAJ_RS16545 558e73b0b8fa7ef5f6c4faddbc29704c 316 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 225 308 1.0E-20 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS16545 558e73b0b8fa7ef5f6c4faddbc29704c 316 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS16545 558e73b0b8fa7ef5f6c4faddbc29704c 316 SMART SM00382 41 225 2.0E-20 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16545 558e73b0b8fa7ef5f6c4faddbc29704c 316 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 227 290 1.6E-18 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS07545 1b6c65081e041b4f9f3239ad308885d3 528 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 427 511 9.7E-16 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS07545 1b6c65081e041b4f9f3239ad308885d3 528 Gene3D G3DSA:3.30.1360.60 449 526 1.7E-23 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS07545 1b6c65081e041b4f9f3239ad308885d3 528 PANTHER PTHR30009:SF11 5 526 7.8E-150 T 14-09-2016 PAJ_RS07545 1b6c65081e041b4f9f3239ad308885d3 528 Pfam PF02378 Phosphotransferase system, EIIC 12 368 1.3E-74 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS07545 1b6c65081e041b4f9f3239ad308885d3 528 PANTHER PTHR30009 5 526 7.8E-150 T 14-09-2016 PAJ_RS07545 1b6c65081e041b4f9f3239ad308885d3 528 SUPERFAMILY SSF55604 452 525 4.32E-17 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS07545 1b6c65081e041b4f9f3239ad308885d3 528 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 464 481 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS07545 1b6c65081e041b4f9f3239ad308885d3 528 Pfam PF00367 phosphotransferase system, EIIB 455 485 2.5E-11 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 SUPERFAMILY SSF46785 3 77 4.53E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 7.0E-28 T 14-09-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 UniPathway: UPA00068 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 Gene3D G3DSA:1.10.10.10 2 77 3.4E-35 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 PANTHER PTHR34471 2 156 2.9E-68 T 14-09-2016 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 148 2.4E-23 T 14-09-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 UniPathway: UPA00068 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 SUPERFAMILY SSF55252 82 149 1.7E-20 T 14-09-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 UniPathway: UPA00068 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 Gene3D G3DSA:3.30.1360.40 80 154 2.2E-27 T 14-09-2016 IPR024946 Arginine repressor C-terminal-like domain PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 74 5.2E-25 T 14-09-2016 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 UniPathway: UPA00068 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 4.2E-25 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 4.2E-25 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 4.2E-25 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 4.2E-25 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 11 151 4.4E-48 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 PANTHER PTHR34471:SF1 2 156 2.9E-68 T 14-09-2016 PAJ_RS15465 a3e4cfaa500ebb51236b94370c2c7c0d 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 60.808 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 PAJ_RS01025 edd59717df31b0a34b3980dc0a074d37 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 107 5.2E-26 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS01025 edd59717df31b0a34b3980dc0a074d37 218 Gene3D G3DSA:1.10.3720.10 9 213 1.8E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS01025 edd59717df31b0a34b3980dc0a074d37 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 212 1.5E-14 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS01025 edd59717df31b0a34b3980dc0a074d37 218 SUPERFAMILY SSF161098 13 204 1.44E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS01025 edd59717df31b0a34b3980dc0a074d37 218 PANTHER PTHR30614 7 218 8.9E-79 T 14-09-2016 PAJ_RS19910 c186a0cde81078e88c3498517e1e5097 135 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 100 4.0E-42 T 14-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 PAJ_RS19910 c186a0cde81078e88c3498517e1e5097 135 Pfam PF02033 Ribosome-binding factor A 7 112 6.2E-33 T 14-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 PAJ_RS19910 c186a0cde81078e88c3498517e1e5097 135 ProSitePatterns PS01319 Ribosome-binding factor A signature. 79 100 - T 14-09-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 PAJ_RS19910 c186a0cde81078e88c3498517e1e5097 135 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 118 3.7E-44 T 14-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 PAJ_RS19910 c186a0cde81078e88c3498517e1e5097 135 PANTHER PTHR33515 1 134 7.6E-54 T 14-09-2016 PAJ_RS19910 c186a0cde81078e88c3498517e1e5097 135 SUPERFAMILY SSF89919 2 107 1.83E-36 T 14-09-2016 IPR023799 Ribosome-binding factor A domain PAJ_RS19910 c186a0cde81078e88c3498517e1e5097 135 Gene3D G3DSA:3.30.300.20 1 107 1.7E-39 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta PAJ_RS19910 c186a0cde81078e88c3498517e1e5097 135 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 120 23.607 T 14-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 PAJ_RS11090 3ee8d10969bd3423f8b776e16d1d41b9 805 Pfam PF00577 Outer membrane usher protein 173 723 1.2E-170 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11090 3ee8d10969bd3423f8b776e16d1d41b9 805 Pfam PF13954 PapC N-terminal domain 12 155 4.4E-42 T 14-09-2016 IPR025885 PapC, N-terminal domain GO:0005515 PAJ_RS11090 3ee8d10969bd3423f8b776e16d1d41b9 805 PANTHER PTHR30451 10 805 0.0 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS11090 3ee8d10969bd3423f8b776e16d1d41b9 805 PANTHER PTHR30451:SF10 10 805 0.0 T 14-09-2016 PAJ_RS11090 3ee8d10969bd3423f8b776e16d1d41b9 805 SUPERFAMILY SSF141729 10 131 8.5E-33 T 14-09-2016 PAJ_RS11090 3ee8d10969bd3423f8b776e16d1d41b9 805 Pfam PF13953 PapC C-terminal domain 734 791 1.2E-13 T 14-09-2016 IPR025949 PapC-like, C-terminal domain PAJ_RS16770 404ccd5af96243dbf0aec3e71045d2ae 190 Pfam PF02659 Putative manganese efflux pump 33 182 7.5E-52 T 14-09-2016 IPR003810 Putative manganese efflux pump PAJ_RS16770 404ccd5af96243dbf0aec3e71045d2ae 190 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 185 25.302 T 14-09-2016 IPR022929 Putative manganese efflux pump MntP PAJ_RS16770 404ccd5af96243dbf0aec3e71045d2ae 190 PANTHER PTHR35529 2 189 3.3E-72 T 14-09-2016 PAJ_RS03020 a5b1569f5782e2e691204c3f156277af 321 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 17 295 8.5E-15 T 14-09-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD PAJ_RS03020 a5b1569f5782e2e691204c3f156277af 321 PANTHER PTHR34697:SF2 1 318 1.1E-35 T 14-09-2016 PAJ_RS03020 a5b1569f5782e2e691204c3f156277af 321 PANTHER PTHR34697 1 318 1.1E-35 T 14-09-2016 PAJ_RS13180 382baffbb23c3572412b1801ed0fda68 156 SUPERFAMILY SSF54523 9 97 4.39E-13 T 14-09-2016 PAJ_RS13180 382baffbb23c3572412b1801ed0fda68 156 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 25 5.1E-5 T 14-09-2016 IPR012902 Prokaryotic N-terminal methylation site PAJ_RS13180 382baffbb23c3572412b1801ed0fda68 156 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 29 2.2E-7 T 14-09-2016 IPR012902 Prokaryotic N-terminal methylation site PAJ_RS13180 382baffbb23c3572412b1801ed0fda68 156 Gene3D G3DSA:3.30.700.10 9 47 1.8E-4 T 14-09-2016 PAJ_RS15600 dc2d618577c18634a7a3ca8238965c84 321 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 14-09-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS15600 dc2d618577c18634a7a3ca8238965c84 321 Pfam PF01207 Dihydrouridine synthase (Dus) 14 318 1.1E-114 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS15600 dc2d618577c18634a7a3ca8238965c84 321 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 49.376 T 14-09-2016 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 PAJ_RS15600 dc2d618577c18634a7a3ca8238965c84 321 SUPERFAMILY SSF51395 10 319 2.93E-88 T 14-09-2016 PAJ_RS15600 dc2d618577c18634a7a3ca8238965c84 321 PIRSF PIRSF006621 1 321 9.2E-102 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS15600 dc2d618577c18634a7a3ca8238965c84 321 Gene3D G3DSA:1.10.1200.80 252 320 3.9E-17 T 14-09-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 PAJ_RS15600 dc2d618577c18634a7a3ca8238965c84 321 PANTHER PTHR11082:SF25 1 318 2.2E-149 T 14-09-2016 PAJ_RS15600 dc2d618577c18634a7a3ca8238965c84 321 PANTHER PTHR11082 1 318 2.2E-149 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS15600 dc2d618577c18634a7a3ca8238965c84 321 Gene3D G3DSA:3.20.20.70 7 244 2.9E-82 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS15600 dc2d618577c18634a7a3ca8238965c84 321 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 319 8.1E-139 T 14-09-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 9.9E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 9.9E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 9.9E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 SMART SM00421 147 204 3.6E-18 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 Gene3D G3DSA:3.40.50.2300 2 121 3.2E-34 T 14-09-2016 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 Pfam PF00072 Response regulator receiver domain 4 116 4.4E-30 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 PANTHER PTHR26402:SF506 2 219 5.1E-112 T 14-09-2016 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 SUPERFAMILY SSF46894 131 211 1.39E-19 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 PANTHER PTHR26402 2 219 5.1E-112 T 14-09-2016 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 SUPERFAMILY SSF52172 2 131 2.7E-33 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 6.2E-21 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 Gene3D G3DSA:1.10.10.10 122 210 1.4E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS03975 94ad721dff0185c73ce61bb5728ed6b6 219 SMART SM00448 2 115 4.1E-30 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS14555 b98841bba682adcb32ab074cad4f22ed 223 Pfam PF06693 Protein of unknown function (DUF1190) 41 208 9.3E-58 T 14-09-2016 IPR009576 Biofilm formation YgiB PAJ_RS14555 b98841bba682adcb32ab074cad4f22ed 223 Hamap MF_01188 UPF0441 protein YgiB [ygiB]. 1 223 36.132 T 14-09-2016 IPR009576 Biofilm formation YgiB PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 PANTHER PTHR32089 177 514 6.7E-113 T 14-09-2016 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 Gene3D G3DSA:1.10.287.950 278 483 1.3E-57 T 14-09-2016 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 SMART SM00304 210 263 4.8E-4 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 Pfam PF00672 HAMP domain 192 258 1.5E-6 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 320 510 5.7E-56 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 SUPERFAMILY SSF58104 231 513 8.11E-70 T 14-09-2016 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 PANTHER PTHR32089:SF63 177 514 6.7E-113 T 14-09-2016 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 285 314 4.3E-50 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 362 389 4.3E-50 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 439 468 4.3E-50 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 391 420 4.3E-50 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 SMART SM00283 264 511 6.9E-84 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS19400 4c60dc087d7430d71f4f894798c41605 553 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 183 1.6E-7 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS13470 30e1fde4f35c9b1cbebe10f4759612ea 138 PANTHER PTHR33317 5 136 5.4E-47 T 14-09-2016 PAJ_RS13470 30e1fde4f35c9b1cbebe10f4759612ea 138 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 136 1.0E-58 T 14-09-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 PAJ_RS13470 30e1fde4f35c9b1cbebe10f4759612ea 138 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 138 24.488 T 14-09-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 PAJ_RS13470 30e1fde4f35c9b1cbebe10f4759612ea 138 Pfam PF03652 Holliday junction resolvase 5 136 1.5E-43 T 14-09-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 PAJ_RS13470 30e1fde4f35c9b1cbebe10f4759612ea 138 Gene3D G3DSA:3.30.420.140 4 137 2.3E-48 T 14-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 PAJ_RS13470 30e1fde4f35c9b1cbebe10f4759612ea 138 SUPERFAMILY SSF53098 4 137 1.2E-43 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS13470 30e1fde4f35c9b1cbebe10f4759612ea 138 SMART SM00732 4 104 1.0E-41 T 14-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 PAJ_RS19650 3105d9cd8265df4f0645c4146dbfed14 44 Pfam PF08085 Entericidin EcnA/B family 23 43 2.8E-10 T 14-09-2016 IPR012556 Entericidin A/B GO:0009636|GO:0016020 PAJ_RS18910 49a29022e208011960dc42661cf2cd9a 122 PANTHER PTHR34299:SF1 1 121 3.7E-42 T 14-09-2016 PAJ_RS18910 49a29022e208011960dc42661cf2cd9a 122 Gene3D G3DSA:1.10.3830.10 4 121 1.3E-47 T 14-09-2016 PAJ_RS18910 49a29022e208011960dc42661cf2cd9a 122 PANTHER PTHR34299 1 121 3.7E-42 T 14-09-2016 PAJ_RS18910 49a29022e208011960dc42661cf2cd9a 122 Pfam PF01219 Prokaryotic diacylglycerol kinase 16 116 1.7E-37 T 14-09-2016 IPR000829 Diacylglycerol kinase, prokaryotic GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 PAJ_RS18910 49a29022e208011960dc42661cf2cd9a 122 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 70 81 - T 14-09-2016 IPR000829 Diacylglycerol kinase, prokaryotic GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 PANTHER PTHR21110:SF0 2 407 1.3E-159 T 14-09-2016 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 SUPERFAMILY SSF143856 117 235 4.32E-49 T 14-09-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 Hamap MF_00740 Phosphopentomutase [deoB]. 1 407 55.341 T 14-09-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 Gene3D G3DSA:3.40.720.10 1 113 3.7E-73 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 Gene3D G3DSA:3.40.720.10 240 407 3.7E-73 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 PIRSF PIRSF001491 1 407 1.0E-162 T 14-09-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 SUPERFAMILY SSF53649 1 114 2.22E-70 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 SUPERFAMILY SSF53649 236 407 2.22E-70 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 PANTHER PTHR21110 2 407 1.3E-159 T 14-09-2016 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 404 1.1E-186 T 14-09-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 Pfam PF01676 Metalloenzyme superfamily 2 398 4.9E-43 T 14-09-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 PAJ_RS14165 886b5aadc5064c9073a079ebfc7690e7 407 Gene3D G3DSA:3.30.70.1250 114 235 3.2E-52 T 14-09-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 PAJ_RS18730 04b03a24dbf22031778c39b853dcb451 196 Gene3D G3DSA:1.20.1590.10 1 194 9.1E-89 T 14-09-2016 IPR023381 YP001051499.1-like domain PAJ_RS18730 04b03a24dbf22031778c39b853dcb451 196 Pfam PF04222 Protein of unknown function (DUF416) 6 193 9.4E-80 T 14-09-2016 IPR007338 Protein of unknown function DUF416 PAJ_RS09355 d866e51f26a6d22b1f2062c072d41baf 312 Gene3D G3DSA:3.40.50.2300 21 144 6.0E-38 T 14-09-2016 PAJ_RS09355 d866e51f26a6d22b1f2062c072d41baf 312 SUPERFAMILY SSF53822 11 306 1.48E-80 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS09355 d866e51f26a6d22b1f2062c072d41baf 312 PANTHER PTHR32196:SF41 1 303 7.0E-141 T 14-09-2016 PAJ_RS09355 d866e51f26a6d22b1f2062c072d41baf 312 Pfam PF13407 Periplasmic binding protein domain 29 284 1.0E-54 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS09355 d866e51f26a6d22b1f2062c072d41baf 312 PANTHER PTHR32196 1 303 7.0E-141 T 14-09-2016 PAJ_RS09355 d866e51f26a6d22b1f2062c072d41baf 312 Gene3D G3DSA:3.40.50.2300 145 306 4.3E-49 T 14-09-2016 PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 PANTHER PTHR11772 446 612 2.8E-165 T 14-09-2016 PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 PANTHER PTHR11772 2 397 2.8E-165 T 14-09-2016 PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 PIRSF PIRSF001589 1 610 1.5E-134 T 14-09-2016 PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 PANTHER PTHR11772:SF7 446 612 2.8E-165 T 14-09-2016 PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 Gene3D G3DSA:3.40.50.620 224 399 5.7E-71 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 Gene3D G3DSA:3.40.50.620 461 583 5.7E-71 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 SUPERFAMILY SSF52402 457 573 3.84E-61 T 14-09-2016 PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 SUPERFAMILY SSF52402 230 395 3.84E-61 T 14-09-2016 PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 Pfam PF00733 Asparagine synthase 241 582 5.5E-86 T 14-09-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 SUPERFAMILY SSF56235 1 225 1.29E-55 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 Gene3D G3DSA:3.60.20.10 1 223 8.3E-66 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 PANTHER PTHR11772:SF7 2 397 2.8E-165 T 14-09-2016 PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 Pfam PF13537 Glutamine amidotransferase domain 48 169 1.2E-37 T 14-09-2016 IPR017932 Glutamine amidotransferase type 2 domain PAJ_RS13975 a87675f535f9b5b5e2cba6453e2ced34 612 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 537 4.5E-141 T 14-09-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 PAJ_RS19725 6aa79990617ee80b4252be28eb6f3547 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 3.1E-22 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS19725 6aa79990617ee80b4252be28eb6f3547 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 6.0E-9 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS19725 6aa79990617ee80b4252be28eb6f3547 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 6.0E-9 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS19725 6aa79990617ee80b4252be28eb6f3547 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 6.0E-9 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS19725 6aa79990617ee80b4252be28eb6f3547 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 14-09-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PAJ_RS19725 6aa79990617ee80b4252be28eb6f3547 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 84 1.4E-21 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS19725 6aa79990617ee80b4252be28eb6f3547 90 Gene3D G3DSA:3.30.1340.10 3 89 9.7E-26 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS19725 6aa79990617ee80b4252be28eb6f3547 90 SUPERFAMILY SSF55594 4 90 5.63E-24 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like PAJ_RS19725 6aa79990617ee80b4252be28eb6f3547 90 PANTHER PTHR33705:SF2 1 90 5.1E-38 T 14-09-2016 PAJ_RS19725 6aa79990617ee80b4252be28eb6f3547 90 PANTHER PTHR33705 1 90 5.1E-38 T 14-09-2016 PAJ_RS01335 0c0db647c3756561ecea3d7f58b75f53 460 Gene3D G3DSA:3.20.20.140 126 405 2.8E-88 T 14-09-2016 PAJ_RS01335 0c0db647c3756561ecea3d7f58b75f53 460 Gene3D G3DSA:2.30.40.10 75 125 1.7E-6 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS01335 0c0db647c3756561ecea3d7f58b75f53 460 PANTHER PTHR32027:SF9 52 456 1.5E-157 T 14-09-2016 PAJ_RS01335 0c0db647c3756561ecea3d7f58b75f53 460 PANTHER PTHR32027 52 456 1.5E-157 T 14-09-2016 PAJ_RS01335 0c0db647c3756561ecea3d7f58b75f53 460 Pfam PF07969 Amidohydrolase family 164 430 6.8E-13 T 14-09-2016 IPR013108 Amidohydrolase 3 PAJ_RS01335 0c0db647c3756561ecea3d7f58b75f53 460 SUPERFAMILY SSF51556 119 425 1.61E-64 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS08780 9ddf595da44cef83b511b884dbb526a6 155 PANTHER PTHR23416:SF23 29 148 1.9E-24 T 14-09-2016 PAJ_RS08780 9ddf595da44cef83b511b884dbb526a6 155 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 101 129 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS08780 9ddf595da44cef83b511b884dbb526a6 155 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 57 91 2.3E-6 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS08780 9ddf595da44cef83b511b884dbb526a6 155 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 92 126 3.7E-8 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS08780 9ddf595da44cef83b511b884dbb526a6 155 Gene3D G3DSA:2.160.10.10 27 150 2.2E-32 T 14-09-2016 PAJ_RS08780 9ddf595da44cef83b511b884dbb526a6 155 PANTHER PTHR23416 29 148 1.9E-24 T 14-09-2016 PAJ_RS08780 9ddf595da44cef83b511b884dbb526a6 155 SUPERFAMILY SSF51161 21 149 4.99E-37 T 14-09-2016 IPR011004 Trimeric LpxA-like PAJ_RS08780 9ddf595da44cef83b511b884dbb526a6 155 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 28 54 0.18 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS17260 3813aec5732345d61cf4f9759b8b4457 358 Gene3D G3DSA:3.40.50.2000 189 357 6.2E-55 T 14-09-2016 PAJ_RS17260 3813aec5732345d61cf4f9759b8b4457 358 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 86 327 8.2E-53 T 14-09-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 PAJ_RS17260 3813aec5732345d61cf4f9759b8b4457 358 PANTHER PTHR30160 11 333 1.0E-86 T 14-09-2016 PAJ_RS17260 3813aec5732345d61cf4f9759b8b4457 358 PANTHER PTHR30160:SF1 11 333 1.0E-86 T 14-09-2016 PAJ_RS17260 3813aec5732345d61cf4f9759b8b4457 358 SUPERFAMILY SSF53756 12 357 2.28E-90 T 14-09-2016 PAJ_RS17260 3813aec5732345d61cf4f9759b8b4457 358 TIGRFAM TIGR02201 heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III 13 356 1.7E-140 T 14-09-2016 IPR011916 Lipopolysaccharide heptosyltransferase III, putative KEGG: 00231+2.-.-.-|UniPathway: UPA00958 PAJ_RS17260 3813aec5732345d61cf4f9759b8b4457 358 Gene3D G3DSA:3.40.50.2000 12 167 5.0E-47 T 14-09-2016 PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 363 518 6.9E-45 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 SUPERFAMILY SSF103190 83 182 5.49E-5 T 14-09-2016 IPR029151 Periplasmic sensor domain-like PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 SUPERFAMILY SSF55073 370 518 4.87E-41 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 Pfam PF02743 Cache domain 45 267 4.3E-19 T 14-09-2016 IPR033479 Double Cache domain 1 PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 Gene3D G3DSA:3.30.70.270 367 521 2.8E-44 T 14-09-2016 PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 PANTHER PTHR10799:SF750 394 516 4.1E-25 T 14-09-2016 PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 PANTHER PTHR10799:SF750 23 62 4.1E-25 T 14-09-2016 PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 PANTHER PTHR10799 394 516 4.1E-25 T 14-09-2016 PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 PANTHER PTHR10799 23 62 4.1E-25 T 14-09-2016 PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 Gene3D G3DSA:3.30.450.20 146 274 6.6E-10 T 14-09-2016 PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 SMART SM00267 351 519 3.4E-40 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS06260 6d29975f27203b72c43604659ae2a035 526 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 515 1.6E-37 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 Gene3D G3DSA:1.10.3720.10 11 221 3.7E-42 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 SUPERFAMILY SSF52540 260 492 3.44E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 SMART SM00382 282 479 4.6E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 SUPERFAMILY SSF161098 16 206 1.44E-37 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 115 1.5E-19 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 Gene3D G3DSA:3.40.50.300 257 501 2.9E-77 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 Pfam PF00005 ABC transporter 275 431 2.7E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 PANTHER PTHR24220 259 504 1.4E-108 T 14-09-2016 PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 218 1.0E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00950 788777d7832698e0dfdee0e34cc9ff0e 507 PANTHER PTHR24220:SF327 259 504 1.4E-108 T 14-09-2016 PAJ_RS01110 7c7f63bd785378e4e85310d8e9513a9d 246 SUPERFAMILY SSF141523 42 159 1.44E-8 T 14-09-2016 PAJ_RS01110 7c7f63bd785378e4e85310d8e9513a9d 246 Pfam PF03734 L,D-transpeptidase catalytic domain 45 160 3.6E-6 T 14-09-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 PAJ_RS01110 7c7f63bd785378e4e85310d8e9513a9d 246 PANTHER PTHR36699 6 233 2.8E-63 T 14-09-2016 PAJ_RS19135 226ed7164c4366e5bfc67be841732a63 415 PANTHER PTHR11384 76 413 3.2E-34 T 14-09-2016 PAJ_RS19135 226ed7164c4366e5bfc67be841732a63 415 PANTHER PTHR11384:SF3 76 413 3.2E-34 T 14-09-2016 PAJ_RS19135 226ed7164c4366e5bfc67be841732a63 415 SUPERFAMILY SSF90123 94 395 7.06E-7 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS19135 226ed7164c4366e5bfc67be841732a63 415 Pfam PF05992 SbmA/BacA-like family 85 398 1.5E-159 T 14-09-2016 IPR009248 SbmA/BacA-like GO:0005215|GO:0006810|GO:0016021 PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.2E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.8E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.8E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.8E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 Gene3D G3DSA:1.10.10.10 2 83 2.3E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 Gene3D G3DSA:3.40.190.10 91 130 9.5E-4 T 14-09-2016 PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 SUPERFAMILY SSF46785 2 82 7.69E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 Pfam PF03466 LysR substrate binding domain 90 294 2.2E-37 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 SUPERFAMILY SSF53850 90 297 7.78E-41 T 14-09-2016 PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 PANTHER PTHR30537 1 292 2.3E-94 T 14-09-2016 PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 PANTHER PTHR30537:SF1 1 292 2.3E-94 T 14-09-2016 PAJ_RS06730 012a47a90b78288fcd60adcb2da044b3 299 Gene3D G3DSA:3.40.190.10 162 262 1.0E-15 T 14-09-2016 PAJ_RS18830 d21b163cf07557bfa3a1e8309f8df9a3 390 Pfam PF00144 Beta-lactamase 20 372 1.0E-60 T 14-09-2016 IPR001466 Beta-lactamase-related PAJ_RS18830 d21b163cf07557bfa3a1e8309f8df9a3 390 PANTHER PTHR22935 10 371 1.4E-76 T 14-09-2016 PAJ_RS18830 d21b163cf07557bfa3a1e8309f8df9a3 390 PANTHER PTHR22935:SF77 10 371 1.4E-76 T 14-09-2016 PAJ_RS18830 d21b163cf07557bfa3a1e8309f8df9a3 390 SUPERFAMILY SSF56601 13 386 5.46E-82 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS18830 d21b163cf07557bfa3a1e8309f8df9a3 390 Gene3D G3DSA:3.40.710.10 3 386 1.1E-82 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS10855 20f079a17646094a1293199bbe8e1783 147 Gene3D G3DSA:3.40.250.10 28 127 2.9E-19 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS10855 20f079a17646094a1293199bbe8e1783 147 Pfam PF00581 Rhodanese-like domain 39 122 1.1E-11 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS10855 20f079a17646094a1293199bbe8e1783 147 SUPERFAMILY SSF52821 7 129 4.58E-23 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS10855 20f079a17646094a1293199bbe8e1783 147 SMART SM00450 29 126 1.1E-14 T 14-09-2016 IPR001763 Rhodanese-like domain PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 7 637 42.173 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 Gene3D G3DSA:2.40.37.10 459 591 2.6E-14 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 Gene3D G3DSA:2.40.37.10 336 359 2.6E-14 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01180 Arginine decarboxylase signature 95 109 6.0E-74 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01180 Arginine decarboxylase signature 468 489 6.0E-74 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01180 Arginine decarboxylase signature 493 518 6.0E-74 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01180 Arginine decarboxylase signature 326 343 6.0E-74 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01180 Arginine decarboxylase signature 199 221 6.0E-74 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01180 Arginine decarboxylase signature 546 567 6.0E-74 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01180 Arginine decarboxylase signature 71 86 6.0E-74 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01180 Arginine decarboxylase signature 149 164 6.0E-74 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01180 Arginine decarboxylase signature 175 196 6.0E-74 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 78 347 2.4E-69 T 14-09-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PANTHER PTHR11482 443 601 4.1E-279 T 14-09-2016 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PANTHER PTHR11482 1 369 4.1E-279 T 14-09-2016 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 SUPERFAMILY SSF50621 461 565 1.43E-8 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 SUPERFAMILY SSF51419 71 348 6.73E-67 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PANTHER PTHR11482:SF36 443 601 4.1E-279 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 351 565 3.9E-24 T 14-09-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 TIGRFAM TIGR01273 speA: arginine decarboxylase 12 636 3.0E-271 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PANTHER PTHR11482:SF36 1 369 4.1E-279 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 103 121 5.8E-19 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 546 559 5.8E-19 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 125 137 5.8E-19 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 242 255 5.8E-19 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 336 355 5.8E-19 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 Gene3D G3DSA:3.20.20.10 73 335 6.6E-60 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 PIRSF PIRSF001336 1 638 1.2E-251 T 14-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PAJ_RS13425 93d0369277b558507d5406d81bfe15fb 638 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 103 121 - T 14-09-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 PAJ_RS11150 d2722b94dd6d510da496b45c53f2cbf0 261 SMART SM00346 16 103 5.4E-19 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS11150 d2722b94dd6d510da496b45c53f2cbf0 261 PANTHER PTHR30136 9 254 2.6E-42 T 14-09-2016 PAJ_RS11150 d2722b94dd6d510da496b45c53f2cbf0 261 Pfam PF09339 IclR helix-turn-helix domain 19 67 5.7E-13 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS11150 d2722b94dd6d510da496b45c53f2cbf0 261 Gene3D G3DSA:1.10.10.10 2 76 3.7E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11150 d2722b94dd6d510da496b45c53f2cbf0 261 Gene3D G3DSA:3.30.450.40 87 254 1.3E-34 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS11150 d2722b94dd6d510da496b45c53f2cbf0 261 SUPERFAMILY SSF46785 16 82 2.85E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11150 d2722b94dd6d510da496b45c53f2cbf0 261 SUPERFAMILY SSF55781 74 253 7.19E-32 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS11150 d2722b94dd6d510da496b45c53f2cbf0 261 Pfam PF01614 Bacterial transcriptional regulator 130 245 1.1E-18 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal PAJ_RS01495 934787ac422c099bef79a5e21d31906a 398 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 253 2.5E-74 T 14-09-2016 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 PAJ_RS01495 934787ac422c099bef79a5e21d31906a 398 Gene3D G3DSA:3.60.21.10 1 274 7.0E-67 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS01495 934787ac422c099bef79a5e21d31906a 398 PANTHER PTHR30337 1 389 3.3E-116 T 14-09-2016 PAJ_RS01495 934787ac422c099bef79a5e21d31906a 398 PANTHER PTHR30337:SF0 1 389 3.3E-116 T 14-09-2016 PAJ_RS01495 934787ac422c099bef79a5e21d31906a 398 SUPERFAMILY SSF56300 1 334 1.03E-58 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS01495 934787ac422c099bef79a5e21d31906a 398 Pfam PF00149 Calcineurin-like phosphoesterase 1 92 1.2E-13 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PAJ_RS01495 934787ac422c099bef79a5e21d31906a 398 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 275 371 1.1E-27 T 14-09-2016 IPR026843 Nuclease SbcCD subunit D, C-terminal domain PAJ_RS02520 2e2094055fe38bf8d00e038b7f959ee2 353 Pfam PF02562 PhoH-like protein 118 321 2.9E-95 T 14-09-2016 IPR003714 PhoH-like protein GO:0005524 PAJ_RS02520 2e2094055fe38bf8d00e038b7f959ee2 353 PANTHER PTHR30473:SF1 1 344 8.5E-208 T 14-09-2016 PAJ_RS02520 2e2094055fe38bf8d00e038b7f959ee2 353 SUPERFAMILY SSF52540 117 293 1.47E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02520 2e2094055fe38bf8d00e038b7f959ee2 353 Gene3D G3DSA:3.40.50.300 118 321 1.4E-89 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02520 2e2094055fe38bf8d00e038b7f959ee2 353 PANTHER PTHR30473 1 344 8.5E-208 T 14-09-2016 PAJ_RS04740 6ee15769bb49ef76f64831a5cbdee25d 431 Gene3D G3DSA:2.60.40.1090 255 431 8.8E-11 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS04740 6ee15769bb49ef76f64831a5cbdee25d 431 SUPERFAMILY SSF49401 255 431 2.98E-10 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS04740 6ee15769bb49ef76f64831a5cbdee25d 431 Pfam PF00419 Fimbrial protein 246 431 1.9E-27 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS04740 6ee15769bb49ef76f64831a5cbdee25d 431 PIRSF PIRSF029766 5 431 2.4E-148 T 14-09-2016 IPR011228 Uncharacterised conserved protein UCP029766 PAJ_RS04480 eadc905131c4f51b61aec53f2514d2bc 236 PANTHER PTHR34933 17 236 1.1E-70 T 14-09-2016 PAJ_RS04480 eadc905131c4f51b61aec53f2514d2bc 236 Hamap MF_00415 Flagellar L-ring protein [flgH]. 6 234 27.514 T 14-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PAJ_RS04480 eadc905131c4f51b61aec53f2514d2bc 236 PRINTS PR01008 Flagellar L-ring protein signature 176 192 2.3E-34 T 14-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PAJ_RS04480 eadc905131c4f51b61aec53f2514d2bc 236 PRINTS PR01008 Flagellar L-ring protein signature 213 227 2.3E-34 T 14-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PAJ_RS04480 eadc905131c4f51b61aec53f2514d2bc 236 PRINTS PR01008 Flagellar L-ring protein signature 197 211 2.3E-34 T 14-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PAJ_RS04480 eadc905131c4f51b61aec53f2514d2bc 236 PRINTS PR01008 Flagellar L-ring protein signature 75 87 2.3E-34 T 14-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PAJ_RS04480 eadc905131c4f51b61aec53f2514d2bc 236 PRINTS PR01008 Flagellar L-ring protein signature 150 165 2.3E-34 T 14-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PAJ_RS04480 eadc905131c4f51b61aec53f2514d2bc 236 PANTHER PTHR34933:SF1 17 236 1.1E-70 T 14-09-2016 PAJ_RS04480 eadc905131c4f51b61aec53f2514d2bc 236 Pfam PF02107 Flagellar L-ring protein 50 235 1.3E-59 T 14-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 Pfam PF01204 Trehalase 38 514 2.2E-156 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 Hamap MF_01059 Cytoplasmic trehalase [treF]. 1 516 81.676 T 14-09-2016 IPR023715 Trehalase, cytoplasmic GO:0004555|GO:0005737|GO:0005993|GO:0071474 KEGG: 00500+3.2.1.28|UniPathway: UPA00300 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 PANTHER PTHR23403:SF8 1 514 1.3E-292 T 14-09-2016 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 ProSitePatterns PS00928 Trehalase signature 2. 426 435 - T 14-09-2016 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 SUPERFAMILY SSF48208 22 514 3.45E-145 T 14-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 PANTHER PTHR23403 1 514 1.3E-292 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 PRINTS PR00744 Glycosyl hydrolase family 37 signature 313 330 6.2E-45 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 PRINTS PR00744 Glycosyl hydrolase family 37 signature 248 265 6.2E-45 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 PRINTS PR00744 Glycosyl hydrolase family 37 signature 419 435 6.2E-45 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 PRINTS PR00744 Glycosyl hydrolase family 37 signature 174 192 6.2E-45 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 PRINTS PR00744 Glycosyl hydrolase family 37 signature 497 510 6.2E-45 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 PRINTS PR00744 Glycosyl hydrolase family 37 signature 281 298 6.2E-45 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 PRINTS PR00744 Glycosyl hydrolase family 37 signature 356 372 6.2E-45 T 14-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS13645 a1378eb519f302eb8dbc90c06dff764d 519 ProSitePatterns PS00927 Trehalase signature 1. 132 145 - T 14-09-2016 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 Hamap MF_01878 Dipeptide and tripeptide permease A [dtpA]. 1 489 48.756 T 14-09-2016 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A GO:0006857|GO:0015197|GO:0016020 PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 PANTHER PTHR11654:SF99 5 492 2.3E-236 T 14-09-2016 PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 SUPERFAMILY SSF103473 19 215 7.76E-26 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 SUPERFAMILY SSF103473 259 484 7.76E-26 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 Pfam PF00854 POT family 89 447 6.2E-88 T 14-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 Gene3D G3DSA:1.20.1250.20 21 203 9.1E-22 T 14-09-2016 PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 Gene3D G3DSA:1.20.1250.20 273 480 3.7E-7 T 14-09-2016 PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 PANTHER PTHR11654 5 492 2.3E-236 T 14-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 17 485 5.6E-141 T 14-09-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 152 164 - T 14-09-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS06185 6f254adc04b33c874a81a93df3aaade9 494 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 77 101 - T 14-09-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS15925 394a02d662668b3b444150923008a422 72 Hamap MF_00715 Protein SlyX [slyX]. 5 72 16.162 T 14-09-2016 IPR007236 SlyX PAJ_RS15925 394a02d662668b3b444150923008a422 72 Pfam PF04102 SlyX 7 72 5.8E-24 T 14-09-2016 IPR007236 SlyX PAJ_RS15925 394a02d662668b3b444150923008a422 72 PANTHER PTHR36508 1 72 1.1E-25 T 14-09-2016 PAJ_RS15925 394a02d662668b3b444150923008a422 72 Gene3D G3DSA:1.20.5.300 2 51 1.2E-19 T 14-09-2016 PAJ_RS14150 914fc15ddf864918ac5ba662e1c63bd1 236 SMART SM00267 71 236 9.9E-50 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14150 914fc15ddf864918ac5ba662e1c63bd1 236 Gene3D G3DSA:3.30.70.270 83 235 4.2E-41 T 14-09-2016 PAJ_RS14150 914fc15ddf864918ac5ba662e1c63bd1 236 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 78 234 1.1E-38 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS14150 914fc15ddf864918ac5ba662e1c63bd1 236 PANTHER PTHR10799 110 236 2.3E-26 T 14-09-2016 PAJ_RS14150 914fc15ddf864918ac5ba662e1c63bd1 236 PANTHER PTHR10799 4 9 2.3E-26 T 14-09-2016 PAJ_RS14150 914fc15ddf864918ac5ba662e1c63bd1 236 PANTHER PTHR10799:SF750 110 236 2.3E-26 T 14-09-2016 PAJ_RS14150 914fc15ddf864918ac5ba662e1c63bd1 236 PANTHER PTHR10799:SF750 4 9 2.3E-26 T 14-09-2016 PAJ_RS14150 914fc15ddf864918ac5ba662e1c63bd1 236 SUPERFAMILY SSF55073 87 235 8.63E-38 T 14-09-2016 IPR029787 Nucleotide cyclase PAJ_RS14150 914fc15ddf864918ac5ba662e1c63bd1 236 Pfam PF00990 Diguanylate cyclase, GGDEF domain 82 232 7.2E-35 T 14-09-2016 IPR000160 GGDEF domain PAJ_RS04320 30b88f5e9df4c0b4e51e4b2db5e8a1fb 509 Gene3D G3DSA:2.70.98.10 19 393 2.2E-174 T 14-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PAJ_RS04320 30b88f5e9df4c0b4e51e4b2db5e8a1fb 509 SUPERFAMILY SSF81296 396 508 1.39E-31 T 14-09-2016 IPR014756 Immunoglobulin E-set PAJ_RS04320 30b88f5e9df4c0b4e51e4b2db5e8a1fb 509 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 3 507 61.029 T 14-09-2016 IPR023704 Glucan biosynthesis protein G UniPathway: UPA00637 PAJ_RS04320 30b88f5e9df4c0b4e51e4b2db5e8a1fb 509 PANTHER PTHR30504:SF4 1 509 0.0 T 14-09-2016 PAJ_RS04320 30b88f5e9df4c0b4e51e4b2db5e8a1fb 509 PIRSF PIRSF006281 2 509 7.7E-236 T 14-09-2016 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D UniPathway: UPA00637 PAJ_RS04320 30b88f5e9df4c0b4e51e4b2db5e8a1fb 509 SUPERFAMILY SSF74650 20 391 5.96E-163 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS04320 30b88f5e9df4c0b4e51e4b2db5e8a1fb 509 PANTHER PTHR30504 1 509 0.0 T 14-09-2016 PAJ_RS04320 30b88f5e9df4c0b4e51e4b2db5e8a1fb 509 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 20 505 1.8E-198 T 14-09-2016 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 UniPathway: UPA00637 PAJ_RS04320 30b88f5e9df4c0b4e51e4b2db5e8a1fb 509 Gene3D G3DSA:2.60.40.10 397 508 2.8E-39 T 14-09-2016 IPR013783 Immunoglobulin-like fold PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 Gene3D G3DSA:2.40.50.140 49 117 2.5E-36 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 251.311 T 14-09-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 SUPERFAMILY SSF50249 48 125 2.06E-29 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 4.8E-32 T 14-09-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.7E-22 T 14-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 SUPERFAMILY SSF68912 1 46 6.67E-12 T 14-09-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 PANTHER PTHR15184:SF34 19 141 8.0E-200 T 14-09-2016 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 Gene3D G3DSA:1.10.720.10 1 47 1.6E-21 T 14-09-2016 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 SMART SM00959 5 47 5.6E-16 T 14-09-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 SMART SM00382 170 355 4.1E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.0E-15 T 14-09-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 PANTHER PTHR15184 160 416 8.0E-200 T 14-09-2016 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 SMART SM00357 52 118 3.0E-17 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 PANTHER PTHR15184:SF34 160 416 8.0E-200 T 14-09-2016 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 4.6E-222 T 14-09-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 Gene3D G3DSA:3.40.50.300 132 418 1.9E-106 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 SUPERFAMILY SSF52540 90 371 1.65E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18275 01a9fb40e3211170dc6619835b681f69 419 PANTHER PTHR15184 19 141 8.0E-200 T 14-09-2016 PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 139 283 1.6E-47 T 14-09-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 14 445 2.7E-178 T 14-09-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 SUPERFAMILY SSF46548 336 444 1.57E-20 T 14-09-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 PANTHER PTHR11780:SF1 14 482 5.5E-240 T 14-09-2016 PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 416 427 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 714 242.355 T 14-09-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 PANTHER PTHR11780 14 482 5.5E-240 T 14-09-2016 PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 115 4.5E-31 T 14-09-2016 IPR026902 RnfC Barrel sandwich hybrid domain PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 Pfam PF12838 4Fe-4S dicluster domain 376 430 1.3E-9 T 14-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 Pfam PF10531 SLBB domain 296 344 2.1E-8 T 14-09-2016 IPR019554 Soluble ligand binding domain PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 SUPERFAMILY SSF142019 95 303 5.75E-59 T 14-09-2016 PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 377 388 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PAJ_RS06215 502bed435f5aa415abf8a6829003b372 814 Gene3D G3DSA:1.10.1060.10 328 446 9.9E-19 T 14-09-2016 PAJ_RS15240 244b70877f8d9abbaebec1a77a52ed91 149 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 4 149 18.131 T 14-09-2016 IPR007382 Uncharacterised protein family UPF0756, transmembrame PAJ_RS15240 244b70877f8d9abbaebec1a77a52ed91 149 PANTHER PTHR38452:SF1 1 146 2.8E-57 T 14-09-2016 PAJ_RS15240 244b70877f8d9abbaebec1a77a52ed91 149 PANTHER PTHR38452 1 146 2.8E-57 T 14-09-2016 PAJ_RS15240 244b70877f8d9abbaebec1a77a52ed91 149 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 21 131 3.0E-30 T 14-09-2016 IPR007382 Uncharacterised protein family UPF0756, transmembrame PAJ_RS15240 244b70877f8d9abbaebec1a77a52ed91 149 Pfam PF04284 Protein of unknown function (DUF441) 8 146 1.1E-46 T 14-09-2016 IPR007382 Uncharacterised protein family UPF0756, transmembrame PAJ_RS08295 4fc6e039b0e556e91cfe2ae9be6dc618 124 PANTHER PTHR34820:SF1 4 113 2.2E-13 T 14-09-2016 IPR032694 Copper transport protein YcnJ GO:0006825 PAJ_RS08295 4fc6e039b0e556e91cfe2ae9be6dc618 124 SUPERFAMILY SSF81296 27 124 8.4E-25 T 14-09-2016 IPR014756 Immunoglobulin E-set PAJ_RS08295 4fc6e039b0e556e91cfe2ae9be6dc618 124 Pfam PF04234 CopC domain 28 123 3.6E-24 T 14-09-2016 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 PAJ_RS08295 4fc6e039b0e556e91cfe2ae9be6dc618 124 Gene3D G3DSA:2.60.40.1220 27 124 1.0E-28 T 14-09-2016 IPR014755 Copper resistance protein CopC/internalin, immunoglobulin-like PAJ_RS08295 4fc6e039b0e556e91cfe2ae9be6dc618 124 PANTHER PTHR34820 4 113 2.2E-13 T 14-09-2016 PAJ_RS00125 76522b149f5bf88acd8cc63f2bd3252c 379 Gene3D G3DSA:2.40.160.10 44 373 2.7E-38 T 14-09-2016 IPR023614 Porin domain PAJ_RS00125 76522b149f5bf88acd8cc63f2bd3252c 379 SUPERFAMILY SSF56935 43 379 1.74E-30 T 14-09-2016 PAJ_RS19765 69ea03d1958c1d904db651609a98b098 188 PANTHER PTHR21485 7 186 1.2E-66 T 14-09-2016 PAJ_RS19765 69ea03d1958c1d904db651609a98b098 188 Gene3D G3DSA:3.40.50.1000 16 182 8.3E-48 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS19765 69ea03d1958c1d904db651609a98b098 188 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 26 179 1.1E-69 T 14-09-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PAJ_RS19765 69ea03d1958c1d904db651609a98b098 188 SUPERFAMILY SSF56784 22 180 2.2E-39 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS19765 69ea03d1958c1d904db651609a98b098 188 PIRSF PIRSF006118 13 188 1.5E-73 T 14-09-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PAJ_RS19765 69ea03d1958c1d904db651609a98b098 188 Pfam PF08282 haloacid dehalogenase-like hydrolase 95 158 3.9E-9 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS02940 f123d68edc2b5c20322c00e5fc0918e3 158 Pfam PF01161 Phosphatidylethanolamine-binding protein 15 157 7.4E-40 T 14-09-2016 IPR008914 Phosphatidylethanolamine-binding protein PAJ_RS02940 f123d68edc2b5c20322c00e5fc0918e3 158 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 18 155 2.0E-53 T 14-09-2016 IPR005247 YbhB/YbcL PAJ_RS02940 f123d68edc2b5c20322c00e5fc0918e3 158 SUPERFAMILY SSF49777 1 157 3.66E-54 T 14-09-2016 IPR008914 Phosphatidylethanolamine-binding protein PAJ_RS02940 f123d68edc2b5c20322c00e5fc0918e3 158 Gene3D G3DSA:3.90.280.10 1 157 4.0E-60 T 14-09-2016 IPR008914 Phosphatidylethanolamine-binding protein PAJ_RS02940 f123d68edc2b5c20322c00e5fc0918e3 158 PANTHER PTHR30289 1 154 2.4E-99 T 14-09-2016 PAJ_RS02940 f123d68edc2b5c20322c00e5fc0918e3 158 PANTHER PTHR30289:SF3 1 154 2.4E-99 T 14-09-2016 PAJ_RS11800 607d23750abc5741e84a1489b0881b37 76 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 13 60 3.4E-13 T 14-09-2016 IPR010260 Prophage CP4-57 regulatory protein (AlpA) PAJ_RS11800 607d23750abc5741e84a1489b0881b37 76 Gene3D G3DSA:1.10.10.10 13 62 4.7E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11800 607d23750abc5741e84a1489b0881b37 76 SUPERFAMILY SSF46955 13 63 1.03E-7 T 14-09-2016 IPR009061 Putative DNA-binding domain PAJ_RS17495 10ac785430950344e217631656900828 91 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 1.0E-33 T 14-09-2016 IPR009383 Protein of unknown function DUF1040 PAJ_RS17495 10ac785430950344e217631656900828 91 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 3.1E-42 T 14-09-2016 IPR009383 Protein of unknown function DUF1040 PAJ_RS14375 45824cae91a9701da3d5105042520bf4 338 Gene3D G3DSA:3.40.50.2300 56 175 1.0E-30 T 14-09-2016 PAJ_RS14375 45824cae91a9701da3d5105042520bf4 338 Gene3D G3DSA:1.10.260.40 4 55 2.9E-21 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS14375 45824cae91a9701da3d5105042520bf4 338 SUPERFAMILY SSF53822 63 337 9.79E-52 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS14375 45824cae91a9701da3d5105042520bf4 338 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 63 322 1.2E-30 T 14-09-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain PAJ_RS14375 45824cae91a9701da3d5105042520bf4 338 Gene3D G3DSA:3.40.50.2300 176 319 1.2E-36 T 14-09-2016 PAJ_RS14375 45824cae91a9701da3d5105042520bf4 338 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS14375 45824cae91a9701da3d5105042520bf4 338 PANTHER PTHR30146 3 337 3.8E-82 T 14-09-2016 PAJ_RS14375 45824cae91a9701da3d5105042520bf4 338 SMART SM00354 3 73 2.2E-28 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS14375 45824cae91a9701da3d5105042520bf4 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 50 6.5E-16 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS14375 45824cae91a9701da3d5105042520bf4 338 SUPERFAMILY SSF47413 2 61 2.56E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 SUPERFAMILY SSF48557 5 462 5.5E-159 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 91.659 T 14-09-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 Pfam PF00206 Lyase 12 342 3.8E-121 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 Pfam PF10415 Fumarase C C-terminus 408 461 3.7E-25 T 14-09-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 5 461 5.0E-247 T 14-09-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 14-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 PANTHER PTHR11444:SF1 5 461 7.8E-253 T 14-09-2016 PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 Gene3D G3DSA:1.20.200.10 139 416 4.2E-106 T 14-09-2016 PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 Gene3D G3DSA:1.10.40.30 417 462 1.0E-32 T 14-09-2016 PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 Gene3D G3DSA:1.10.275.10 4 138 7.0E-60 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 3.6E-34 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 3.6E-34 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 3.6E-34 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 3.6E-34 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 PANTHER PTHR11444 5 461 7.8E-253 T 14-09-2016 IPR000362 Fumarate lyase family PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 5.3E-5 T 14-09-2016 PAJ_RS06455 ae3e9770924d9d2a982888149037c9fd 465 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 5.3E-5 T 14-09-2016 PAJ_RS14470 d0d905ddb7e47a2c24225ac600836221 245 PANTHER PTHR10434:SF20 1 245 1.4E-155 T 14-09-2016 PAJ_RS14470 d0d905ddb7e47a2c24225ac600836221 245 Pfam PF01553 Acyltransferase 58 180 6.1E-31 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PAJ_RS14470 d0d905ddb7e47a2c24225ac600836221 245 SUPERFAMILY SSF69593 2 240 8.37E-56 T 14-09-2016 PAJ_RS14470 d0d905ddb7e47a2c24225ac600836221 245 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 1.6E-46 T 14-09-2016 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|Reactome: REACT_22258|UniPathway: UPA00557 PAJ_RS14470 d0d905ddb7e47a2c24225ac600836221 245 PANTHER PTHR10434 1 245 1.4E-155 T 14-09-2016 PAJ_RS14470 d0d905ddb7e47a2c24225ac600836221 245 SMART SM00563 67 182 4.8E-38 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PAJ_RS14470 d0d905ddb7e47a2c24225ac600836221 245 Gene3D G3DSA:3.40.1130.10 59 240 1.1E-15 T 14-09-2016 PAJ_RS08360 2972728417c88041f85bd337cd35b8c6 315 PANTHER PTHR30477:SF1 133 299 9.3E-90 T 14-09-2016 PAJ_RS08360 2972728417c88041f85bd337cd35b8c6 315 PANTHER PTHR30477 133 299 9.3E-90 T 14-09-2016 PAJ_RS08360 2972728417c88041f85bd337cd35b8c6 315 PANTHER PTHR30477 8 116 9.3E-90 T 14-09-2016 PAJ_RS08360 2972728417c88041f85bd337cd35b8c6 315 Pfam PF01297 Zinc-uptake complex component A periplasmic 29 307 2.5E-58 T 14-09-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 PAJ_RS08360 2972728417c88041f85bd337cd35b8c6 315 Gene3D G3DSA:3.40.50.1980 28 202 5.4E-44 T 14-09-2016 PAJ_RS08360 2972728417c88041f85bd337cd35b8c6 315 Gene3D G3DSA:3.40.50.1980 203 314 4.5E-30 T 14-09-2016 PAJ_RS08360 2972728417c88041f85bd337cd35b8c6 315 SUPERFAMILY SSF53807 28 312 7.36E-77 T 14-09-2016 PAJ_RS08360 2972728417c88041f85bd337cd35b8c6 315 PANTHER PTHR30477:SF1 8 116 9.3E-90 T 14-09-2016 PAJ_RS02885 a3b7e8a55b1d6e4f14c093e80d2e2cb0 250 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 248 1.1E-128 T 14-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 PAJ_RS02885 a3b7e8a55b1d6e4f14c093e80d2e2cb0 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 125 1.5E-30 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PAJ_RS02885 a3b7e8a55b1d6e4f14c093e80d2e2cb0 250 PANTHER PTHR11931 1 250 6.1E-172 T 14-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 PAJ_RS02885 a3b7e8a55b1d6e4f14c093e80d2e2cb0 250 Gene3D G3DSA:3.40.50.1240 2 250 3.4E-98 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS02885 a3b7e8a55b1d6e4f14c093e80d2e2cb0 250 SMART SM00855 5 191 1.9E-27 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PAJ_RS02885 a3b7e8a55b1d6e4f14c093e80d2e2cb0 250 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 14-09-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 PAJ_RS02885 a3b7e8a55b1d6e4f14c093e80d2e2cb0 250 SUPERFAMILY SSF53254 4 247 5.13E-78 T 14-09-2016 IPR029033 Histidine phosphatase superfamily PAJ_RS02885 a3b7e8a55b1d6e4f14c093e80d2e2cb0 250 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 230 46.674 T 14-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 PAJ_RS10770 f9e72576e887b5f58b16519982ae2be5 189 Gene3D G3DSA:3.40.50.1950 2 188 5.4E-76 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 PAJ_RS10770 f9e72576e887b5f58b16519982ae2be5 189 PANTHER PTHR30108:SF10 2 188 4.8E-116 T 14-09-2016 PAJ_RS10770 f9e72576e887b5f58b16519982ae2be5 189 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 188 36.858 T 14-09-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 PAJ_RS10770 f9e72576e887b5f58b16519982ae2be5 189 SUPERFAMILY SSF52507 2 188 2.75E-59 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 PAJ_RS10770 f9e72576e887b5f58b16519982ae2be5 189 PANTHER PTHR30108 2 188 4.8E-116 T 14-09-2016 PAJ_RS10770 f9e72576e887b5f58b16519982ae2be5 189 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 186 3.0E-70 T 14-09-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 PAJ_RS10770 f9e72576e887b5f58b16519982ae2be5 189 Pfam PF02441 Flavoprotein 2 127 4.0E-26 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PANTHER PTHR24322:SF459 159 191 1.9E-65 T 14-09-2016 PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PANTHER PTHR24322:SF459 14 143 1.9E-65 T 14-09-2016 PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PANTHER PTHR24322 159 191 1.9E-65 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PANTHER PTHR24322 14 143 1.9E-65 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.1E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.1E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.1E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.1E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 1.1E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.1E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 251 1.9E-61 T 14-09-2016 PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 Gene3D G3DSA:3.40.50.720 4 253 2.7E-86 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 4.9E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 4.9E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 4.9E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20605 cb4901f10f2773dd8e53fa82ee00e608 255 SUPERFAMILY SSF51735 4 253 7.35E-81 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17615 2e223105e1f46d444a9ffd24557cb4c6 208 Pfam PF02527 rRNA small subunit methyltransferase G 20 200 7.2E-64 T 14-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 PAJ_RS17615 2e223105e1f46d444a9ffd24557cb4c6 208 PANTHER PTHR31760 1 205 4.2E-88 T 14-09-2016 PAJ_RS17615 2e223105e1f46d444a9ffd24557cb4c6 208 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 13 201 28.705 T 14-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 PAJ_RS17615 2e223105e1f46d444a9ffd24557cb4c6 208 PANTHER PTHR31760:SF0 1 205 4.2E-88 T 14-09-2016 PAJ_RS17615 2e223105e1f46d444a9ffd24557cb4c6 208 Gene3D G3DSA:3.40.50.150 4 204 5.9E-75 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS17615 2e223105e1f46d444a9ffd24557cb4c6 208 PIRSF PIRSF003078 1 207 8.9E-66 T 14-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 PAJ_RS17615 2e223105e1f46d444a9ffd24557cb4c6 208 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 25 202 1.6E-58 T 14-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 PAJ_RS17615 2e223105e1f46d444a9ffd24557cb4c6 208 SUPERFAMILY SSF53335 3 205 1.37E-44 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 SUPERFAMILY SSF54909 69 154 1.19E-17 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 Gene3D G3DSA:3.30.70.920 63 144 3.5E-20 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 Pfam PF01037 Lrp/AsnC ligand binding domain 74 146 1.3E-18 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 Pfam PF13412 Winged helix-turn-helix DNA-binding 7 54 1.6E-18 T 14-09-2016 PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 PANTHER PTHR30154:SF28 1 156 9.4E-49 T 14-09-2016 PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 14-09-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 2.7E-18 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 2.7E-18 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 2.7E-18 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 Gene3D G3DSA:1.10.10.10 8 58 1.8E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 SUPERFAMILY SSF46785 6 64 1.48E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 PANTHER PTHR30154 1 156 9.4E-49 T 14-09-2016 PAJ_RS09460 cdf16aac29b867f73bda9c7be33f262c 170 SMART SM00344 7 116 2.5E-42 T 14-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PAJ_RS11490 325e8be1aa9019e19f18ff003b1ca9f0 192 Gene3D G3DSA:3.90.79.10 5 185 9.9E-57 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS11490 325e8be1aa9019e19f18ff003b1ca9f0 192 Pfam PF00293 NUDIX domain 45 155 1.9E-9 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS11490 325e8be1aa9019e19f18ff003b1ca9f0 192 PANTHER PTHR11839 12 189 9.3E-40 T 14-09-2016 PAJ_RS11490 325e8be1aa9019e19f18ff003b1ca9f0 192 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 5 183 7.2E-65 T 14-09-2016 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 PAJ_RS11490 325e8be1aa9019e19f18ff003b1ca9f0 192 SUPERFAMILY SSF55811 11 186 1.29E-46 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS18530 39f8ce36ed4b46555029b9ce480d4f8c 84 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 79 25.013 T 14-09-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 PAJ_RS18530 39f8ce36ed4b46555029b9ce480d4f8c 84 Pfam PF02416 mttA/Hcf106 family 4 55 2.7E-16 T 14-09-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 PAJ_RS18530 39f8ce36ed4b46555029b9ce480d4f8c 84 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 1.5E-22 T 14-09-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 PAJ_RS18530 39f8ce36ed4b46555029b9ce480d4f8c 84 PANTHER PTHR33162 1 69 3.2E-24 T 14-09-2016 PAJ_RS14495 cbd55d05bd5d7d9f75977762081d0be7 363 Pfam PF02378 Phosphotransferase system, EIIC 19 253 3.0E-10 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS14495 cbd55d05bd5d7d9f75977762081d0be7 363 PANTHER PTHR30505 3 358 7.4E-118 T 14-09-2016 PAJ_RS14495 cbd55d05bd5d7d9f75977762081d0be7 363 PANTHER PTHR30505:SF0 3 358 7.4E-118 T 14-09-2016 PAJ_RS14495 cbd55d05bd5d7d9f75977762081d0be7 363 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 4 335 5.5E-90 T 14-09-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 PAJ_RS00385 3deb651243f0ae61c212684eebbb941b 205 SUPERFAMILY SSF52540 7 194 2.98E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00385 3deb651243f0ae61c212684eebbb941b 205 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 5 199 27.249 T 14-09-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 PAJ_RS00385 3deb651243f0ae61c212684eebbb941b 205 Pfam PF01121 Dephospho-CoA kinase 7 181 3.3E-67 T 14-09-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 PAJ_RS00385 3deb651243f0ae61c212684eebbb941b 205 Gene3D G3DSA:3.40.50.300 3 198 4.3E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00385 3deb651243f0ae61c212684eebbb941b 205 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 8 190 2.8E-62 T 14-09-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 PAJ_RS00385 3deb651243f0ae61c212684eebbb941b 205 PANTHER PTHR10695 2 198 2.0E-70 T 14-09-2016 PAJ_RS19775 ded082f6e4a5c787e90bccff5078406b 326 PANTHER PTHR10846 1 320 3.6E-72 T 14-09-2016 IPR004481 Sodium/potassium/calcium exchanger Reactome: REACT_15518 PAJ_RS19775 ded082f6e4a5c787e90bccff5078406b 326 Pfam PF01699 Sodium/calcium exchanger protein 4 144 4.6E-26 T 14-09-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 PAJ_RS19775 ded082f6e4a5c787e90bccff5078406b 326 Pfam PF01699 Sodium/calcium exchanger protein 176 318 3.2E-26 T 14-09-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 PAJ_RS19775 ded082f6e4a5c787e90bccff5078406b 326 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 3 313 1.1E-87 T 14-09-2016 IPR004481 Sodium/potassium/calcium exchanger Reactome: REACT_15518 PAJ_RS17760 cb1380b19c72d003dc93d59ca0d37f92 333 PANTHER PTHR32196 1 333 2.0E-92 T 14-09-2016 PAJ_RS17760 cb1380b19c72d003dc93d59ca0d37f92 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 46 313 3.7E-40 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS17760 cb1380b19c72d003dc93d59ca0d37f92 333 PANTHER PTHR32196:SF35 1 333 2.0E-92 T 14-09-2016 PAJ_RS10435 10f33a2d08b799f249425ac89e76a82a 467 PANTHER PTHR11328:SF24 25 461 1.1E-124 T 14-09-2016 PAJ_RS10435 10f33a2d08b799f249425ac89e76a82a 467 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 29 461 3.5E-118 T 14-09-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 PAJ_RS10435 10f33a2d08b799f249425ac89e76a82a 467 SUPERFAMILY SSF103473 33 444 9.68E-29 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS10435 10f33a2d08b799f249425ac89e76a82a 467 Pfam PF13347 MFS/sugar transport protein 30 447 4.3E-96 T 14-09-2016 PAJ_RS10435 10f33a2d08b799f249425ac89e76a82a 467 Gene3D G3DSA:1.20.1250.20 244 443 4.6E-7 T 14-09-2016 PAJ_RS10435 10f33a2d08b799f249425ac89e76a82a 467 Gene3D G3DSA:1.20.1250.20 37 225 2.2E-13 T 14-09-2016 PAJ_RS10435 10f33a2d08b799f249425ac89e76a82a 467 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 79 104 - T 14-09-2016 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 PAJ_RS10435 10f33a2d08b799f249425ac89e76a82a 467 PANTHER PTHR11328 25 461 1.1E-124 T 14-09-2016 PAJ_RS04265 2b242a65cae9e1793557e87606910f36 501 PANTHER PTHR11814:SF76 24 489 9.5E-180 T 14-09-2016 PAJ_RS04265 2b242a65cae9e1793557e87606910f36 501 Pfam PF01740 STAS domain 421 485 2.6E-6 T 14-09-2016 IPR002645 STAS domain PAJ_RS04265 2b242a65cae9e1793557e87606910f36 501 Pfam PF00916 Sulfate permease family 176 372 1.0E-23 T 14-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 PAJ_RS04265 2b242a65cae9e1793557e87606910f36 501 Pfam PF00916 Sulfate permease family 31 159 1.1E-15 T 14-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 PAJ_RS04265 2b242a65cae9e1793557e87606910f36 501 Gene3D G3DSA:3.30.750.24 412 485 5.3E-8 T 14-09-2016 IPR002645 STAS domain PAJ_RS04265 2b242a65cae9e1793557e87606910f36 501 PANTHER PTHR11814 24 489 9.5E-180 T 14-09-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 PAJ_RS04265 2b242a65cae9e1793557e87606910f36 501 SUPERFAMILY SSF52091 411 486 9.03E-10 T 14-09-2016 IPR002645 STAS domain PAJ_RS07510 755c664090fc455d6051994f0e022115 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 311 7.1E-44 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07510 755c664090fc455d6051994f0e022115 321 PANTHER PTHR30465:SF65 1 147 7.4E-167 T 14-09-2016 PAJ_RS07510 755c664090fc455d6051994f0e022115 321 PANTHER PTHR30465:SF65 172 315 7.4E-167 T 14-09-2016 PAJ_RS07510 755c664090fc455d6051994f0e022115 321 PANTHER PTHR30465 172 315 7.4E-167 T 14-09-2016 PAJ_RS07510 755c664090fc455d6051994f0e022115 321 PANTHER PTHR30465 1 147 7.4E-167 T 14-09-2016 PAJ_RS07510 755c664090fc455d6051994f0e022115 321 SUPERFAMILY SSF161098 72 138 6.28E-23 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07510 755c664090fc455d6051994f0e022115 321 SUPERFAMILY SSF161098 175 300 6.28E-23 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07510 755c664090fc455d6051994f0e022115 321 Gene3D G3DSA:1.10.3720.10 72 141 8.2E-24 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07510 755c664090fc455d6051994f0e022115 321 Gene3D G3DSA:1.10.3720.10 178 310 8.2E-24 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 Gene3D G3DSA:3.30.559.10 168 405 4.1E-92 T 14-09-2016 IPR023213 Chloramphenicol acetyltransferase-like domain PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 177 405 3.0E-81 T 14-09-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 PANTHER PTHR23151:SF47 4 407 4.7E-249 T 14-09-2016 PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 407 3.5E-194 T 14-09-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 SUPERFAMILY SSF51230 2 94 9.68E-25 T 14-09-2016 IPR011053 Single hybrid motif PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 SUPERFAMILY SSF47005 107 151 1.83E-11 T 14-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 14-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 SUPERFAMILY SSF52777 177 406 1.78E-89 T 14-09-2016 PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 Gene3D G3DSA:4.10.320.10 114 154 6.2E-21 T 14-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 Gene3D G3DSA:2.40.50.100 1 94 2.5E-26 T 14-09-2016 PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 PANTHER PTHR23151 4 407 4.7E-249 T 14-09-2016 PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 Pfam PF02817 e3 binding domain 114 147 1.9E-12 T 14-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PAJ_RS02735 82cc9243e81abaa3c8dbe951b4e6d62c 407 Pfam PF00364 Biotin-requiring enzyme 5 76 2.0E-18 T 14-09-2016 IPR000089 Biotin/lipoyl attachment PAJ_RS05530 148428a1f3447eb213542299fd0bbe01 76 Pfam PF06150 ChaB 9 75 3.0E-27 T 14-09-2016 IPR009317 ChaB PAJ_RS05530 148428a1f3447eb213542299fd0bbe01 76 SUPERFAMILY SSF140376 2 74 2.62E-28 T 14-09-2016 PAJ_RS13355 80131a412b4e77e6466fc74825637401 198 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 9 190 3.1E-56 T 14-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase PAJ_RS13355 80131a412b4e77e6466fc74825637401 198 PANTHER PTHR23407 1 198 1.4E-64 T 14-09-2016 PAJ_RS13355 80131a412b4e77e6466fc74825637401 198 Gene3D G3DSA:3.40.50.10420 9 195 1.8E-59 T 14-09-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain PAJ_RS13355 80131a412b4e77e6466fc74825637401 198 PANTHER PTHR23407:SF1 1 198 1.4E-64 T 14-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase PAJ_RS13355 80131a412b4e77e6466fc74825637401 198 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 9 190 7.6E-48 T 14-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase PAJ_RS13355 80131a412b4e77e6466fc74825637401 198 SUPERFAMILY SSF100950 9 196 6.42E-58 T 14-09-2016 PAJ_RS13355 80131a412b4e77e6466fc74825637401 198 PIRSF PIRSF006806 6 193 2.4E-40 T 14-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase PAJ_RS01155 f2551a0fb038f5a6a79bd2a92f14e036 152 Gene3D G3DSA:3.40.50.2020 1 145 3.3E-44 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS01155 f2551a0fb038f5a6a79bd2a92f14e036 152 SUPERFAMILY SSF53271 4 146 8.92E-31 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS01155 f2551a0fb038f5a6a79bd2a92f14e036 152 PANTHER PTHR39563 2 152 2.0E-111 T 14-09-2016 PAJ_RS01155 f2551a0fb038f5a6a79bd2a92f14e036 152 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 152 40.16 T 14-09-2016 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22|UniPathway: UPA00602 PAJ_RS01155 f2551a0fb038f5a6a79bd2a92f14e036 152 Pfam PF00156 Phosphoribosyl transferase domain 12 143 1.0E-17 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 SUPERFAMILY SSF55136 189 270 6.54E-9 T 14-09-2016 IPR011256 Regulatory factor, effector binding domain PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 Pfam PF12833 Helix-turn-helix domain 35 109 1.8E-19 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 SMART SM00342 25 108 8.8E-26 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 Gene3D G3DSA:1.10.10.60 62 110 1.7E-19 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 Gene3D G3DSA:1.10.10.60 7 61 1.5E-18 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 Gene3D G3DSA:3.20.80.10 137 286 1.6E-15 T 14-09-2016 IPR011256 Regulatory factor, effector binding domain PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 PANTHER PTHR11019:SF84 11 116 1.2E-40 T 14-09-2016 PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 SUPERFAMILY SSF46689 9 59 2.42E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 77 92 5.4E-5 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 92 108 5.4E-5 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 SUPERFAMILY SSF46689 61 112 1.34E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS13600 927999a427f6fd23d89add9f0ee1d782 288 PANTHER PTHR11019 11 116 1.2E-40 T 14-09-2016 PAJ_RS17235 e04d62a9f9076394ed43507b5c8a39a0 329 Pfam PF00535 Glycosyl transferase family 2 9 161 8.5E-28 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS17235 e04d62a9f9076394ed43507b5c8a39a0 329 SUPERFAMILY SSF53448 7 231 9.38E-43 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS17235 e04d62a9f9076394ed43507b5c8a39a0 329 PANTHER PTHR22916 7 236 1.0E-33 T 14-09-2016 PAJ_RS17235 e04d62a9f9076394ed43507b5c8a39a0 329 Gene3D G3DSA:3.90.550.10 7 205 1.9E-39 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS16575 b35bcbfe43dbe050f000a4a2bea4f23c 249 Pfam PF04445 Putative SAM-dependent methyltransferase 19 246 3.9E-107 T 14-09-2016 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 PAJ_RS16575 b35bcbfe43dbe050f000a4a2bea4f23c 249 Gene3D G3DSA:3.40.1630.10 1 56 2.2E-26 T 14-09-2016 PAJ_RS16575 b35bcbfe43dbe050f000a4a2bea4f23c 249 SUPERFAMILY SSF53335 10 246 2.06E-74 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS16575 b35bcbfe43dbe050f000a4a2bea4f23c 249 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 3 248 38.304 T 14-09-2016 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 PAJ_RS16575 b35bcbfe43dbe050f000a4a2bea4f23c 249 PANTHER PTHR36112:SF1 1 246 6.2E-138 T 14-09-2016 PAJ_RS16575 b35bcbfe43dbe050f000a4a2bea4f23c 249 PANTHER PTHR36112 1 246 6.2E-138 T 14-09-2016 PAJ_RS16575 b35bcbfe43dbe050f000a4a2bea4f23c 249 Gene3D G3DSA:3.40.50.150 57 247 7.4E-76 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS15575 97d930557165175feb61b26f421a2b9b 154 Gene3D G3DSA:2.40.50.100 78 154 3.4E-33 T 14-09-2016 PAJ_RS15575 97d930557165175feb61b26f421a2b9b 154 PANTHER PTHR23151 1 154 6.3E-50 T 14-09-2016 PAJ_RS15575 97d930557165175feb61b26f421a2b9b 154 Pfam PF00364 Biotin-requiring enzyme 81 153 5.1E-26 T 14-09-2016 IPR000089 Biotin/lipoyl attachment PAJ_RS15575 97d930557165175feb61b26f421a2b9b 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 83 96 1.3E-18 T 14-09-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 PAJ_RS15575 97d930557165175feb61b26f421a2b9b 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 100 114 1.3E-18 T 14-09-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 PAJ_RS15575 97d930557165175feb61b26f421a2b9b 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 115 128 1.3E-18 T 14-09-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 PAJ_RS15575 97d930557165175feb61b26f421a2b9b 154 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 110 127 - T 14-09-2016 IPR001882 Biotin-binding site PAJ_RS15575 97d930557165175feb61b26f421a2b9b 154 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 154 1.8E-68 T 14-09-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 PAJ_RS15575 97d930557165175feb61b26f421a2b9b 154 SUPERFAMILY SSF51230 79 154 1.31E-26 T 14-09-2016 IPR011053 Single hybrid motif PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PANTHER PTHR34501:SF1 2 367 3.5E-225 T 14-09-2016 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 151 162 2.9E-17 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 238 250 2.9E-17 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 319 336 2.9E-17 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 2.9E-17 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 2.9E-17 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PANTHER PTHR34501 2 367 3.5E-225 T 14-09-2016 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 SUPERFAMILY SSF56935 22 367 9.77E-82 T 14-09-2016 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 1.3E-67 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 1.3E-67 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 149 171 1.3E-67 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 1.3E-67 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 244 261 1.3E-67 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 275 294 1.3E-67 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 Pfam PF00267 Gram-negative porin 27 367 1.2E-142 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS12365 7f70af6b86cc10a0ffb314207a86fb4b 367 Gene3D G3DSA:2.40.160.10 22 367 2.2E-100 T 14-09-2016 IPR023614 Porin domain PAJ_RS08695 13d501124d96db1517a411b8dedf2660 328 SUPERFAMILY SSF53686 8 325 2.23E-83 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS08695 13d501124d96db1517a411b8dedf2660 328 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 13 316 5.3E-53 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS08695 13d501124d96db1517a411b8dedf2660 328 Gene3D G3DSA:3.40.50.1100 112 325 1.3E-67 T 14-09-2016 PAJ_RS08695 13d501124d96db1517a411b8dedf2660 328 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 12 327 7.5E-126 T 14-09-2016 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 PAJ_RS08695 13d501124d96db1517a411b8dedf2660 328 PANTHER PTHR10314:SF105 6 317 2.9E-145 T 14-09-2016 PAJ_RS08695 13d501124d96db1517a411b8dedf2660 328 PANTHER PTHR10314 6 317 2.9E-145 T 14-09-2016 PAJ_RS08695 13d501124d96db1517a411b8dedf2660 328 PIRSF PIRSF006278 2 328 2.6E-92 T 14-09-2016 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase PAJ_RS08695 13d501124d96db1517a411b8dedf2660 328 Hamap MF_01045 D-cysteine desulfhydrase [dcyD]. 1 328 65.56 T 14-09-2016 IPR023702 D-cysteine desulphhydrase, bacterial GO:0019148 KEGG: 00270+4.4.1.15 PAJ_RS08145 bcb372bfb31e96cfeb1f05a74097b56c 264 SUPERFAMILY SSF55781 77 259 1.63E-51 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS08145 bcb372bfb31e96cfeb1f05a74097b56c 264 Gene3D G3DSA:1.10.10.10 12 85 4.6E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08145 bcb372bfb31e96cfeb1f05a74097b56c 264 SUPERFAMILY SSF46785 13 86 3.47E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS08145 bcb372bfb31e96cfeb1f05a74097b56c 264 SMART SM00346 13 102 2.1E-35 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS08145 bcb372bfb31e96cfeb1f05a74097b56c 264 PANTHER PTHR30136 6 264 1.5E-114 T 14-09-2016 PAJ_RS08145 bcb372bfb31e96cfeb1f05a74097b56c 264 Pfam PF01614 Bacterial transcriptional regulator 129 254 5.1E-38 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal PAJ_RS08145 bcb372bfb31e96cfeb1f05a74097b56c 264 Gene3D G3DSA:3.30.450.40 86 261 3.8E-64 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS08145 bcb372bfb31e96cfeb1f05a74097b56c 264 PANTHER PTHR30136:SF7 6 264 1.5E-114 T 14-09-2016 PAJ_RS08145 bcb372bfb31e96cfeb1f05a74097b56c 264 Pfam PF09339 IclR helix-turn-helix domain 15 65 8.3E-15 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS19025 595ff977c5db465e570b5403ce1e6c70 418 Pfam PF01943 Polysaccharide biosynthesis protein 7 253 1.7E-6 T 14-09-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 PAJ_RS15765 86102beebe35e726160a723d74822d16 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 22.129 T 14-09-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 PAJ_RS15765 86102beebe35e726160a723d74822d16 59 SUPERFAMILY SSF55129 3 59 1.57E-21 T 14-09-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain PAJ_RS15765 86102beebe35e726160a723d74822d16 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 1.2E-19 T 14-09-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain PAJ_RS15765 86102beebe35e726160a723d74822d16 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 2.1E-27 T 14-09-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 PAJ_RS15765 86102beebe35e726160a723d74822d16 59 PIRSF PIRSF002211 1 59 1.3E-29 T 14-09-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 PAJ_RS15765 86102beebe35e726160a723d74822d16 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 14-09-2016 IPR018038 Ribosomal protein L30, conserved site PAJ_RS15765 86102beebe35e726160a723d74822d16 59 PANTHER PTHR15892 1 59 2.4E-28 T 14-09-2016 PAJ_RS15765 86102beebe35e726160a723d74822d16 59 Gene3D G3DSA:3.30.1390.20 3 59 5.8E-31 T 14-09-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain PAJ_RS00140 fbfe577220b8fdc050f5378997757a93 125 Gene3D G3DSA:2.60.40.1470 6 124 2.6E-46 T 14-09-2016 IPR007474 ApaG domain PAJ_RS00140 fbfe577220b8fdc050f5378997757a93 125 Pfam PF04379 Protein of unknown function (DUF525) 18 102 1.2E-34 T 14-09-2016 IPR007474 ApaG domain PAJ_RS00140 fbfe577220b8fdc050f5378997757a93 125 PANTHER PTHR14289 11 120 1.1E-52 T 14-09-2016 PAJ_RS00140 fbfe577220b8fdc050f5378997757a93 125 SUPERFAMILY SSF110069 6 124 4.45E-47 T 14-09-2016 IPR007474 ApaG domain PAJ_RS00140 fbfe577220b8fdc050f5378997757a93 125 Hamap MF_00791 Protein ApaG [apaG]. 1 125 32.1 T 14-09-2016 IPR023065 Uncharacterised protein family ApaG PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 SUPERFAMILY SSF53187 5 174 3.71E-54 T 14-09-2016 PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 SUPERFAMILY SSF53187 285 367 3.71E-54 T 14-09-2016 PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 102 140 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 PANTHER PTHR11014 8 366 2.7E-70 T 14-09-2016 PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 Gene3D G3DSA:3.40.630.10 309 366 2.2E-61 T 14-09-2016 PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 Gene3D G3DSA:3.40.630.10 7 183 2.2E-61 T 14-09-2016 PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 Gene3D G3DSA:3.30.70.360 184 272 5.2E-25 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 Pfam PF07687 Peptidase dimerisation domain 171 272 2.0E-21 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 Pfam PF01546 Peptidase family M20/M25/M40 69 366 9.8E-31 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 SUPERFAMILY SSF55031 175 270 1.94E-20 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain PAJ_RS20125 b6ad6513b38cfe8eca2a61d876ba0a8f 371 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 68 77 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PAJ_RS02770 76e03e0117797d2791b0a541261443e2 134 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 130 2.3E-50 T 14-09-2016 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- PAJ_RS02770 76e03e0117797d2791b0a541261443e2 134 Gene3D G3DSA:3.10.129.10 4 133 6.8E-47 T 14-09-2016 IPR029069 HotDog domain PAJ_RS02770 76e03e0117797d2791b0a541261443e2 134 PIRSF PIRSF003230 1 134 2.1E-48 T 14-09-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 PAJ_RS02770 76e03e0117797d2791b0a541261443e2 134 Pfam PF03061 Thioesterase superfamily 20 103 1.7E-18 T 14-09-2016 IPR006683 Thioesterase domain PAJ_RS02770 76e03e0117797d2791b0a541261443e2 134 PANTHER PTHR31793 1 134 3.2E-50 T 14-09-2016 PAJ_RS02770 76e03e0117797d2791b0a541261443e2 134 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 125 7.2E-44 T 14-09-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 PAJ_RS02770 76e03e0117797d2791b0a541261443e2 134 SUPERFAMILY SSF54637 4 133 1.39E-38 T 14-09-2016 IPR029069 HotDog domain PAJ_RS02770 76e03e0117797d2791b0a541261443e2 134 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 11 28 - T 14-09-2016 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 PAJ_RS02770 76e03e0117797d2791b0a541261443e2 134 PANTHER PTHR31793:SF9 1 134 3.2E-50 T 14-09-2016 PAJ_RS14315 2d83c5161c24b7c2cf650c3187eb559e 160 Pfam PF10777 Inner membrane protein YlaC 1 152 3.7E-61 T 14-09-2016 IPR019713 Inner membrane protein YlaC PAJ_RS13850 5f3ea4a8ddc9d46444c4708ccf2b9052 137 TIGRFAM TIGR03751 conj_TIGR03751: conjugative transfer region lipoprotein, TIGR03751 family 15 134 1.3E-55 T 14-09-2016 IPR022262 Lipoprotein, putative PAJ_RS20810 3d7931ae556347d7e4af1d85ad79752d 254 Gene3D G3DSA:1.10.10.10 3 43 8.2E-4 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20810 3d7931ae556347d7e4af1d85ad79752d 254 SUPERFAMILY SSF100950 76 236 1.0E-24 T 14-09-2016 PAJ_RS20810 3d7931ae556347d7e4af1d85ad79752d 254 PANTHER PTHR30363 2 254 1.4E-120 T 14-09-2016 PAJ_RS20810 3d7931ae556347d7e4af1d85ad79752d 254 Pfam PF08220 DeoR-like helix-turn-helix domain 8 55 3.0E-10 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS20810 3d7931ae556347d7e4af1d85ad79752d 254 Pfam PF00455 DeoR C terminal sensor domain 76 234 8.2E-42 T 14-09-2016 IPR014036 DeoR C-terminal sensor domain PAJ_RS20810 3d7931ae556347d7e4af1d85ad79752d 254 SMART SM00420 8 57 7.3E-7 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PAJ_RS20810 3d7931ae556347d7e4af1d85ad79752d 254 PANTHER PTHR30363:SF8 2 254 1.4E-120 T 14-09-2016 PAJ_RS20810 3d7931ae556347d7e4af1d85ad79752d 254 Gene3D G3DSA:3.40.50.1360 78 217 2.7E-8 T 14-09-2016 PAJ_RS20810 3d7931ae556347d7e4af1d85ad79752d 254 SMART SM01134 74 235 1.6E-54 T 14-09-2016 PAJ_RS20810 3d7931ae556347d7e4af1d85ad79752d 254 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 14-09-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 PAJ_RS07800 df7f1bac4cf9a12d027305460f4a4384 546 Gene3D G3DSA:3.10.105.10 300 514 5.4E-65 T 14-09-2016 PAJ_RS07800 df7f1bac4cf9a12d027305460f4a4384 546 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 89 110 - T 14-09-2016 IPR023765 Solute-binding protein family 5, conserved site PAJ_RS07800 df7f1bac4cf9a12d027305460f4a4384 546 PANTHER PTHR30290 1 545 1.9E-200 T 14-09-2016 PAJ_RS07800 df7f1bac4cf9a12d027305460f4a4384 546 PANTHER PTHR30290:SF10 1 545 1.9E-200 T 14-09-2016 PAJ_RS07800 df7f1bac4cf9a12d027305460f4a4384 546 PIRSF PIRSF002741 1 545 4.0E-110 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS07800 df7f1bac4cf9a12d027305460f4a4384 546 SUPERFAMILY SSF53850 37 528 1.27E-144 T 14-09-2016 PAJ_RS07800 df7f1bac4cf9a12d027305460f4a4384 546 Gene3D G3DSA:3.90.76.10 50 224 3.1E-51 T 14-09-2016 PAJ_RS07800 df7f1bac4cf9a12d027305460f4a4384 546 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 466 5.4E-86 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS11890 5b9ebabd480c6ac1fca8621138ec42e6 775 Gene3D G3DSA:1.10.3810.10 60 228 6.0E-47 T 14-09-2016 PAJ_RS11890 5b9ebabd480c6ac1fca8621138ec42e6 775 Pfam PF00905 Penicillin binding protein transpeptidase domain 302 558 1.9E-13 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PAJ_RS11890 5b9ebabd480c6ac1fca8621138ec42e6 775 Gene3D G3DSA:3.40.710.10 229 616 1.6E-70 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS11890 5b9ebabd480c6ac1fca8621138ec42e6 775 PANTHER PTHR32282:SF0 12 677 7.0E-196 T 14-09-2016 PAJ_RS11890 5b9ebabd480c6ac1fca8621138ec42e6 775 PANTHER PTHR32282 12 677 7.0E-196 T 14-09-2016 PAJ_RS11890 5b9ebabd480c6ac1fca8621138ec42e6 775 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 690 772 7.3E-13 T 14-09-2016 IPR009647 Penicillin-binding, C-terminal KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 PAJ_RS11890 5b9ebabd480c6ac1fca8621138ec42e6 775 Pfam PF00912 Transglycosylase 60 226 1.2E-46 T 14-09-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 PAJ_RS11890 5b9ebabd480c6ac1fca8621138ec42e6 775 SUPERFAMILY SSF53955 40 259 5.62E-61 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS11890 5b9ebabd480c6ac1fca8621138ec42e6 775 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 37 772 3.2E-246 T 14-09-2016 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 PAJ_RS11890 5b9ebabd480c6ac1fca8621138ec42e6 775 SUPERFAMILY SSF56601 208 638 1.45E-91 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS06540 12364945eec73b12e0d6dbb195ee7896 286 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 283 5.0E-12 T 14-09-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 PAJ_RS06540 12364945eec73b12e0d6dbb195ee7896 286 PANTHER PTHR22981 3 284 8.7E-69 T 14-09-2016 PAJ_RS06540 12364945eec73b12e0d6dbb195ee7896 286 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 163 1.4E-37 T 14-09-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 PAJ_RS06540 12364945eec73b12e0d6dbb195ee7896 286 SUPERFAMILY SSF51735 5 164 7.89E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06540 12364945eec73b12e0d6dbb195ee7896 286 SUPERFAMILY SSF48179 164 284 3.97E-25 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS06540 12364945eec73b12e0d6dbb195ee7896 286 Gene3D G3DSA:1.10.1040.10 168 284 3.7E-27 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS06540 12364945eec73b12e0d6dbb195ee7896 286 Gene3D G3DSA:3.40.50.720 1 167 1.3E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06540 12364945eec73b12e0d6dbb195ee7896 286 PIRSF PIRSF000103 1 286 5.2E-73 T 14-09-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 PAJ_RS17730 1991354f6d51a75e4e73b645634cbfe6 393 PANTHER PTHR32196 239 392 2.6E-155 T 14-09-2016 PAJ_RS17730 1991354f6d51a75e4e73b645634cbfe6 393 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 383 5.1E-47 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS17730 1991354f6d51a75e4e73b645634cbfe6 393 PANTHER PTHR32196 26 181 2.6E-155 T 14-09-2016 PAJ_RS17730 1991354f6d51a75e4e73b645634cbfe6 393 PANTHER PTHR32196:SF32 26 181 2.6E-155 T 14-09-2016 PAJ_RS17730 1991354f6d51a75e4e73b645634cbfe6 393 PANTHER PTHR32196:SF32 239 392 2.6E-155 T 14-09-2016 PAJ_RS02460 3c1c3009b1a57cda703861d6ed9fe272 213 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 7 211 1.4E-55 T 14-09-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 PAJ_RS02460 3c1c3009b1a57cda703861d6ed9fe272 213 Pfam PF01467 Cytidylyltransferase-like 7 186 1.4E-31 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PAJ_RS02460 3c1c3009b1a57cda703861d6ed9fe272 213 PANTHER PTHR12039 6 144 1.2E-49 T 14-09-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 PAJ_RS02460 3c1c3009b1a57cda703861d6ed9fe272 213 PANTHER PTHR12039 160 213 1.2E-49 T 14-09-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 PAJ_RS02460 3c1c3009b1a57cda703861d6ed9fe272 213 Gene3D G3DSA:3.40.50.620 6 212 8.0E-63 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS02460 3c1c3009b1a57cda703861d6ed9fe272 213 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 6 67 1.7E-11 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PAJ_RS02460 3c1c3009b1a57cda703861d6ed9fe272 213 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 3 212 29.996 T 14-09-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 PAJ_RS02460 3c1c3009b1a57cda703861d6ed9fe272 213 SUPERFAMILY SSF52374 4 212 3.56E-55 T 14-09-2016 PAJ_RS12355 ef8deacd8b66fbe0496b04aa499850dd 232 Pfam PF03737 Demethylmenaquinone methyltransferase 28 178 1.1E-41 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PAJ_RS12355 ef8deacd8b66fbe0496b04aa499850dd 232 Gene3D G3DSA:3.50.30.40 24 185 3.6E-47 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PAJ_RS12355 ef8deacd8b66fbe0496b04aa499850dd 232 PANTHER PTHR33254 17 231 3.9E-50 T 14-09-2016 PAJ_RS12355 ef8deacd8b66fbe0496b04aa499850dd 232 SUPERFAMILY SSF89562 24 189 1.7E-41 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PAJ_RS12355 ef8deacd8b66fbe0496b04aa499850dd 232 PANTHER PTHR33254:SF5 17 231 3.9E-50 T 14-09-2016 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 PIRSF PIRSF001373 1 520 1.0E-246 T 14-09-2016 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 Pfam PF00425 chorismate binding enzyme 242 502 5.4E-85 T 14-09-2016 IPR015890 Chorismate-utilising enzyme, C-terminal PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 Gene3D G3DSA:3.60.120.10 7 517 3.4E-162 T 14-09-2016 IPR005801 ADC synthase GO:0009058 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 17 515 4.4E-242 T 14-09-2016 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 SUPERFAMILY SSF56322 12 516 2.35E-162 T 14-09-2016 IPR005801 ADC synthase GO:0009058 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 PANTHER PTHR11236:SF22 1 513 4.0E-256 T 14-09-2016 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 Pfam PF04715 Anthranilate synthase component I, N terminal region 19 191 2.4E-15 T 14-09-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 PRINTS PR00095 Anthranilate synthase component I signature 364 377 5.6E-25 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 PRINTS PR00095 Anthranilate synthase component I signature 350 363 5.6E-25 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 PRINTS PR00095 Anthranilate synthase component I signature 444 458 5.6E-25 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 PRINTS PR00095 Anthranilate synthase component I signature 459 473 5.6E-25 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS07695 d0cb7a3efc4422c268d62995561a2e84 520 PANTHER PTHR11236 1 513 4.0E-256 T 14-09-2016 PAJ_RS04385 35a0b32e4dddb7c888d1c650910d267a 84 Pfam PF13991 BssS protein family 11 79 2.4E-37 T 14-09-2016 IPR025730 Biofilm regulator BssS PAJ_RS04385 35a0b32e4dddb7c888d1c650910d267a 84 ProDom PD060858 YCEP CYTOPLASMIC STY1199 ESCHERICHIA COLI SIMILAR ECS1438 1 84 4.0E-27 T 14-09-2016 IPR025730 Biofilm regulator BssS PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Gene3D G3DSA:2.160.20.10 75 375 2.3E-92 T 14-09-2016 IPR012334 Pectin lyase fold PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 25 1.4E-6 T 14-09-2016 IPR024973 ESPR domain PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF04829 Pre-toxin domain with VENN motif 3265 3314 2.4E-15 T 14-09-2016 IPR006914 VENN motif-containing domain PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 PANTHER PTHR32093 1 207 1.9E-54 T 14-09-2016 PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 103 202 1.5E-24 T 14-09-2016 IPR008638 Filamentous haemagglutinin, N-terminal PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF15530 Bacterial toxin 25 3334 3490 1.3E-45 T 14-09-2016 IPR029113 Bacterial toxin 25 PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 1205 1248 0.0067 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 961 998 0.028 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 1368 1450 5.1E-5 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 772 832 1.5E-4 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 855 916 0.0023 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 1108 1146 160.0 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 686 738 1.4 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 259 336 1.6E-4 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 1154 1200 0.0093 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 386 491 0.022 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 605 668 0.023 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 1256 1314 1.8E-8 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 917 956 0.14 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05594 Haemagluttinin repeat 1020 1103 1.2E-8 T 14-09-2016 IPR008619 Filamentous haemagglutinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2098 2127 0.1 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 362 403 0.16 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1050 1090 2.2E-6 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1180 1220 2.5E-5 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 522 553 0.068 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 989 1027 0.63 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1139 1177 2.3E-4 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1777 1816 1.7E-6 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1343 1374 0.0065 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 570 595 8.0E-4 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1261 1299 3.9E-5 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 658 699 4.7E-7 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 950 988 2.3E-4 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1563 1598 0.082 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 433 464 0.34 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1537 1573 1.6 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 700 740 2.6E-6 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 781 820 7.2E-4 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 883 923 6.2E-4 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1221 1260 2.1E-4 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1010 1043 0.98 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1419 1455 1.7 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 821 862 0.0014 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 619 657 3.2E-6 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1399 1433 1.5E-5 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 741 780 1.8E-4 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1302 1342 1.4E-4 T 14-09-2016 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF05860 haemagglutination activity domain 82 206 1.1E-33 T 14-09-2016 IPR008638 Filamentous haemagglutinin, N-terminal PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF13332 Haemagluttinin repeat 2566 2654 0.0034 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF13332 Haemagluttinin repeat 2465 2554 6.8E-8 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF13332 Haemagluttinin repeat 2254 2317 1.1E-8 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF13332 Haemagluttinin repeat 2720 2895 1.4E-47 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF13332 Haemagluttinin repeat 2173 2241 0.0047 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 Pfam PF13332 Haemagluttinin repeat 2386 2455 1.9E-4 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 SMART SM00912 85 207 5.7E-52 T 14-09-2016 IPR008638 Filamentous haemagglutinin, N-terminal PAJ_RS02095 3400041c13b5571246f0bdb91e27fa93 3490 SUPERFAMILY SSF51126 77 389 1.76E-60 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS03175 3ca570243bc6e396686e508ee7412d65 351 PANTHER PTHR30146 26 350 9.2E-147 T 14-09-2016 PAJ_RS03175 3ca570243bc6e396686e508ee7412d65 351 SMART SM00354 26 96 8.1E-28 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS03175 3ca570243bc6e396686e508ee7412d65 351 SUPERFAMILY SSF53822 83 337 1.15E-50 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS03175 3ca570243bc6e396686e508ee7412d65 351 Pfam PF00356 Bacterial regulatory proteins, lacI family 28 73 1.6E-16 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PAJ_RS03175 3ca570243bc6e396686e508ee7412d65 351 SUPERFAMILY SSF47413 26 84 2.04E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS03175 3ca570243bc6e396686e508ee7412d65 351 Gene3D G3DSA:3.40.50.2300 79 194 7.3E-32 T 14-09-2016 PAJ_RS03175 3ca570243bc6e396686e508ee7412d65 351 Gene3D G3DSA:1.10.260.40 27 78 4.8E-23 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS03175 3ca570243bc6e396686e508ee7412d65 351 PANTHER PTHR30146:SF2 26 350 9.2E-147 T 14-09-2016 PAJ_RS03175 3ca570243bc6e396686e508ee7412d65 351 Gene3D G3DSA:3.40.50.2300 195 350 8.4E-37 T 14-09-2016 PAJ_RS03175 3ca570243bc6e396686e508ee7412d65 351 Pfam PF13377 Periplasmic binding protein-like domain 193 350 9.8E-26 T 14-09-2016 PAJ_RS10385 877ae26eb1ce7357fc3ffbc57874f1a4 457 SUPERFAMILY SSF111283 18 457 5.49E-95 T 14-09-2016 PAJ_RS10385 877ae26eb1ce7357fc3ffbc57874f1a4 457 Pfam PF01523 Putative modulator of DNA gyrase 39 330 2.3E-41 T 14-09-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS10385 877ae26eb1ce7357fc3ffbc57874f1a4 457 PANTHER PTHR30624:SF1 12 457 4.3E-103 T 14-09-2016 PAJ_RS10385 877ae26eb1ce7357fc3ffbc57874f1a4 457 PANTHER PTHR30624 12 457 4.3E-103 T 14-09-2016 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR00701 60kDa inner membrane protein signature 158 178 7.7E-106 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR00701 60kDa inner membrane protein signature 66 87 7.7E-106 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR00701 60kDa inner membrane protein signature 324 344 7.7E-106 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR00701 60kDa inner membrane protein signature 499 522 7.7E-106 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR00701 60kDa inner membrane protein signature 217 235 7.7E-106 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR00701 60kDa inner membrane protein signature 2 23 7.7E-106 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR00701 60kDa inner membrane protein signature 251 266 7.7E-106 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR00701 60kDa inner membrane protein signature 415 438 7.7E-106 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR00701 60kDa inner membrane protein signature 462 484 7.7E-106 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 Pfam PF02096 60Kd inner membrane protein 354 533 1.7E-60 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PANTHER PTHR12428:SF14 165 548 1.5E-150 T 14-09-2016 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 352 3.0E-120 T 14-09-2016 IPR028053 Membrane insertase YidC, N-terminal PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PANTHER PTHR12428 165 548 1.5E-150 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 Pfam PF14849 YidC periplasmic domain 60 343 6.2E-93 T 14-09-2016 IPR028053 Membrane insertase YidC, N-terminal PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR01900 YidC translocation/secretion protein signature 468 483 7.0E-30 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR01900 YidC translocation/secretion protein signature 488 512 7.0E-30 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 PRINTS PR01900 YidC translocation/secretion protein signature 339 355 7.0E-30 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 535 26.814 T 14-09-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 PAJ_RS17980 9f1cd927894696577ff0996f85a91634 548 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 353 533 1.8E-69 T 14-09-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal PAJ_RS04035 6e9d4a61d1d48a3312d2517425c35209 230 PANTHER PTHR10245:SF53 1 226 2.2E-47 T 14-09-2016 PAJ_RS04035 6e9d4a61d1d48a3312d2517425c35209 230 SMART SM00530 6 62 8.3E-14 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS04035 6e9d4a61d1d48a3312d2517425c35209 230 Pfam PF00717 Peptidase S24-like 140 206 5.1E-12 T 14-09-2016 IPR019759 Peptidase S24/S26A/S26B PAJ_RS04035 6e9d4a61d1d48a3312d2517425c35209 230 Pfam PF13560 Helix-turn-helix domain 4 62 1.2E-12 T 14-09-2016 PAJ_RS04035 6e9d4a61d1d48a3312d2517425c35209 230 SUPERFAMILY SSF47413 1 64 1.31E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS04035 6e9d4a61d1d48a3312d2517425c35209 230 Gene3D G3DSA:2.10.109.10 90 219 1.4E-19 T 14-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PAJ_RS04035 6e9d4a61d1d48a3312d2517425c35209 230 PANTHER PTHR10245 1 226 2.2E-47 T 14-09-2016 PAJ_RS04035 6e9d4a61d1d48a3312d2517425c35209 230 SUPERFAMILY SSF51306 88 219 2.22E-21 T 14-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PAJ_RS04035 6e9d4a61d1d48a3312d2517425c35209 230 Gene3D G3DSA:1.10.260.40 2 77 5.8E-20 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS04805 5c2d8f3dbd180298fd74306c1bfb3c54 120 PANTHER PTHR37001:SF1 30 109 5.8E-18 T 14-09-2016 PAJ_RS04805 5c2d8f3dbd180298fd74306c1bfb3c54 120 SUPERFAMILY SSF101967 35 105 1.02E-5 T 14-09-2016 PAJ_RS04805 5c2d8f3dbd180298fd74306c1bfb3c54 120 PANTHER PTHR37001 30 109 5.8E-18 T 14-09-2016 PAJ_RS11415 f60dcd57300323c60233b6a7e9293374 453 PIRSF PIRSF005348 15 452 3.6E-151 T 14-09-2016 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 PAJ_RS11415 f60dcd57300323c60233b6a7e9293374 453 Pfam PF03390 2-hydroxycarboxylate transporter family 36 444 2.0E-134 T 14-09-2016 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 PAJ_RS11415 f60dcd57300323c60233b6a7e9293374 453 PANTHER PTHR40033 4 453 6.8E-126 T 14-09-2016 PAJ_RS19385 527e16194f6826db9e53c528c5e071c3 577 PANTHER PTHR34384:SF2 6 577 2.9E-297 T 14-09-2016 PAJ_RS19385 527e16194f6826db9e53c528c5e071c3 577 Pfam PF04183 IucA / IucC family 130 372 9.9E-69 T 14-09-2016 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 PAJ_RS19385 527e16194f6826db9e53c528c5e071c3 577 Pfam PF06276 Ferric iron reductase FhuF-like transporter 394 553 1.4E-34 T 14-09-2016 IPR022770 Ferric iron reductase FhuF domain PAJ_RS19385 527e16194f6826db9e53c528c5e071c3 577 PANTHER PTHR34384 6 577 2.9E-297 T 14-09-2016 PAJ_RS11300 161c395f103db99bfbcf6fca2f2cbe5f 72 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 68 7.0E-20 T 14-09-2016 IPR024530 Putative quorum-sensing-regulated virulence factor PAJ_RS11300 161c395f103db99bfbcf6fca2f2cbe5f 72 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 2 68 3.6E-30 T 14-09-2016 IPR024530 Putative quorum-sensing-regulated virulence factor PAJ_RS11300 161c395f103db99bfbcf6fca2f2cbe5f 72 PANTHER PTHR40613 1 72 6.2E-39 T 14-09-2016 PAJ_RS11300 161c395f103db99bfbcf6fca2f2cbe5f 72 PANTHER PTHR40613:SF1 1 72 6.2E-39 T 14-09-2016 PAJ_RS05055 d9b61666774669ccfe19ec1777907833 356 Gene3D G3DSA:3.20.20.140 22 343 1.6E-40 T 14-09-2016 PAJ_RS05055 d9b61666774669ccfe19ec1777907833 356 PANTHER PTHR21240:SF9 12 352 8.3E-69 T 14-09-2016 PAJ_RS05055 d9b61666774669ccfe19ec1777907833 356 Pfam PF04909 Amidohydrolase 31 341 1.1E-27 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 PAJ_RS05055 d9b61666774669ccfe19ec1777907833 356 SUPERFAMILY SSF51556 30 342 3.09E-33 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS05055 d9b61666774669ccfe19ec1777907833 356 PANTHER PTHR21240 12 352 8.3E-69 T 14-09-2016 PAJ_RS19355 f523aef077cdab1233bd4bb32717c9cb 289 PANTHER PTHR30126 4 268 1.9E-47 T 14-09-2016 PAJ_RS19355 f523aef077cdab1233bd4bb32717c9cb 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 3.9E-15 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS19355 f523aef077cdab1233bd4bb32717c9cb 289 PANTHER PTHR30126:SF19 4 268 1.9E-47 T 14-09-2016 PAJ_RS19355 f523aef077cdab1233bd4bb32717c9cb 289 Pfam PF03466 LysR substrate binding domain 90 286 8.3E-18 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS19355 f523aef077cdab1233bd4bb32717c9cb 289 Gene3D G3DSA:3.40.190.10 88 195 2.7E-7 T 14-09-2016 PAJ_RS19355 f523aef077cdab1233bd4bb32717c9cb 289 Gene3D G3DSA:1.10.10.10 5 87 5.6E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19355 f523aef077cdab1233bd4bb32717c9cb 289 SUPERFAMILY SSF53850 88 287 2.9E-19 T 14-09-2016 PAJ_RS19355 f523aef077cdab1233bd4bb32717c9cb 289 SUPERFAMILY SSF46785 6 90 6.81E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 Gene3D G3DSA:2.160.20.10 40 329 2.6E-94 T 14-09-2016 IPR012334 Pectin lyase fold PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 Gene3D G3DSA:2.160.20.10 729 841 5.4E-4 T 14-09-2016 IPR012334 Pectin lyase fold PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 Pfam PF13332 Haemagluttinin repeat 2460 2528 2.7E-7 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 Pfam PF13332 Haemagluttinin repeat 2897 3072 5.3E-44 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 Pfam PF13332 Haemagluttinin repeat 2590 2651 1.6E-6 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 Pfam PF13332 Haemagluttinin repeat 2667 2798 2.6E-12 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 PANTHER PTHR32093 7 173 4.0E-53 T 14-09-2016 PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 Pfam PF05860 haemagglutination activity domain 46 171 9.6E-34 T 14-09-2016 IPR008638 Filamentous haemagglutinin, N-terminal PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 SMART SM00912 51 173 3.1E-51 T 14-09-2016 IPR008638 Filamentous haemagglutinin, N-terminal PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 69 168 5.3E-19 T 14-09-2016 IPR008638 Filamentous haemagglutinin, N-terminal PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 SUPERFAMILY SSF51126 45 297 2.29E-60 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 SUPERFAMILY SSF51126 358 383 2.29E-60 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS01270 bc9c9e2b5973d88b9c1505346b18f24b 3466 Pfam PF04829 Pre-toxin domain with VENN motif 3419 3466 8.2E-17 T 14-09-2016 IPR006914 VENN motif-containing domain PAJ_RS12240 138e76e63606e27751ae072770814cbb 298 Pfam PF12697 Alpha/beta hydrolase family 38 287 1.1E-17 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS12240 138e76e63606e27751ae072770814cbb 298 PRINTS PR00412 Epoxide hydrolase signature 119 132 9.5E-5 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS12240 138e76e63606e27751ae072770814cbb 298 PRINTS PR00412 Epoxide hydrolase signature 42 60 9.5E-5 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS12240 138e76e63606e27751ae072770814cbb 298 PRINTS PR00412 Epoxide hydrolase signature 105 118 9.5E-5 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PAJ_RS12240 138e76e63606e27751ae072770814cbb 298 Gene3D G3DSA:3.40.50.1820 8 293 1.3E-64 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS12240 138e76e63606e27751ae072770814cbb 298 PANTHER PTHR10992 13 295 7.2E-45 T 14-09-2016 PAJ_RS12240 138e76e63606e27751ae072770814cbb 298 PANTHER PTHR10992:SF796 13 295 7.2E-45 T 14-09-2016 PAJ_RS12240 138e76e63606e27751ae072770814cbb 298 SUPERFAMILY SSF53474 10 296 4.18E-68 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS12030 685694a6007e00b29b87ab1e90660568 245 SUPERFAMILY SSF57863 85 166 2.62E-10 T 14-09-2016 PAJ_RS12030 685694a6007e00b29b87ab1e90660568 245 PANTHER PTHR33991 1 241 7.7E-65 T 14-09-2016 PAJ_RS12030 685694a6007e00b29b87ab1e90660568 245 SUPERFAMILY SSF50249 4 75 3.77E-14 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS12030 685694a6007e00b29b87ab1e90660568 245 Hamap MF_00201 DNA repair protein RecO [recO]. 1 231 23.707 T 14-09-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 PAJ_RS12030 685694a6007e00b29b87ab1e90660568 245 TIGRFAM TIGR00613 reco: DNA repair protein RecO 5 230 1.3E-40 T 14-09-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 PAJ_RS12030 685694a6007e00b29b87ab1e90660568 245 Pfam PF02565 Recombination protein O C terminal 83 225 7.1E-24 T 14-09-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 PAJ_RS12030 685694a6007e00b29b87ab1e90660568 245 Pfam PF11967 Recombination protein O N terminal 4 76 8.1E-23 T 14-09-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal PAJ_RS12030 685694a6007e00b29b87ab1e90660568 245 Gene3D G3DSA:2.40.50.140 6 75 4.9E-9 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS19130 f610aaf9e9c96b8d131b84dd3b610443 69 SUPERFAMILY SSF159871 3 69 3.14E-11 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS19130 f610aaf9e9c96b8d131b84dd3b610443 69 Gene3D G3DSA:3.30.1660.10 23 69 6.6E-12 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS19130 f610aaf9e9c96b8d131b84dd3b610443 69 Pfam PF07338 Protein of unknown function (DUF1471) 24 67 8.6E-8 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 217 477 4.4E-85 T 14-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 Gene3D G3DSA:3.40.1190.20 219 475 3.3E-92 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 212 481 22.703 T 14-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 Pfam PF03853 YjeF-related protein N-terminus 18 177 7.2E-43 T 14-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 Pfam PF01256 Carbohydrate kinase 235 471 1.4E-72 T 14-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 PANTHER PTHR12592 1 482 9.6E-144 T 14-09-2016 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 SUPERFAMILY SSF64153 2 233 5.36E-58 T 14-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 1 198 20.607 T 14-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 PIRSF PIRSF017184 1 484 4.1E-152 T 14-09-2016 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 3 198 2.4E-56 T 14-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 416 426 - T 14-09-2016 IPR017953 Carbohydrate kinase, predicted, conserved site PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 SUPERFAMILY SSF53613 210 476 3.45E-76 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 Gene3D G3DSA:3.40.50.10260 2 218 4.8E-64 T 14-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 PAJ_RS15415 532ecfc4a6c61a1262525379bc7453ab 484 PANTHER PTHR12592:SF0 1 482 9.6E-144 T 14-09-2016 PAJ_RS18975 459aec8e5602704c5855c18acd466a69 138 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 4 138 5.0E-47 T 14-09-2016 IPR001602 Uncharacterised protein family UPF0047 PAJ_RS18975 459aec8e5602704c5855c18acd466a69 138 Gene3D G3DSA:2.60.120.460 1 138 5.9E-55 T 14-09-2016 IPR001602 Uncharacterised protein family UPF0047 PAJ_RS18975 459aec8e5602704c5855c18acd466a69 138 PANTHER PTHR30615 1 138 1.2E-69 T 14-09-2016 PAJ_RS18975 459aec8e5602704c5855c18acd466a69 138 SUPERFAMILY SSF111038 1 138 1.44E-47 T 14-09-2016 IPR001602 Uncharacterised protein family UPF0047 PAJ_RS18975 459aec8e5602704c5855c18acd466a69 138 PANTHER PTHR30615:SF5 1 138 1.2E-69 T 14-09-2016 PAJ_RS18975 459aec8e5602704c5855c18acd466a69 138 Pfam PF01894 Uncharacterised protein family UPF0047 19 134 2.1E-36 T 14-09-2016 IPR001602 Uncharacterised protein family UPF0047 PAJ_RS18975 459aec8e5602704c5855c18acd466a69 138 PIRSF PIRSF004681 1 138 3.8E-44 T 14-09-2016 IPR001602 Uncharacterised protein family UPF0047 PAJ_RS18975 459aec8e5602704c5855c18acd466a69 138 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 99 117 - T 14-09-2016 IPR001602 Uncharacterised protein family UPF0047 PAJ_RS16670 d4644c8fe73e97b5f9323cf71827728d 167 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 166 89.222 T 14-09-2016 IPR020765 Uncharacterised protein family UPF0114, gammaproteobacteria GO:0005886 PAJ_RS16670 d4644c8fe73e97b5f9323cf71827728d 167 PANTHER PTHR38596:SF1 1 161 4.3E-93 T 14-09-2016 PAJ_RS16670 d4644c8fe73e97b5f9323cf71827728d 167 Pfam PF03350 Uncharacterized protein family, UPF0114 9 125 5.0E-35 T 14-09-2016 IPR005134 Uncharacterised protein family UPF0114 PAJ_RS16670 d4644c8fe73e97b5f9323cf71827728d 167 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 1 165 1.5E-72 T 14-09-2016 IPR020761 Uncharacterised protein family UPF0114, bacteria PAJ_RS16670 d4644c8fe73e97b5f9323cf71827728d 167 PANTHER PTHR38596 1 161 4.3E-93 T 14-09-2016 PAJ_RS16010 2b6028bc55c37b0ec09fbd7aa7594e10 691 PANTHER PTHR30509 1 689 0.0 T 14-09-2016 PAJ_RS16010 2b6028bc55c37b0ec09fbd7aa7594e10 691 Pfam PF13515 Fusaric acid resistance protein-like 378 498 2.4E-18 T 14-09-2016 PAJ_RS16010 2b6028bc55c37b0ec09fbd7aa7594e10 691 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 671 2.7E-199 T 14-09-2016 IPR010020 Integral membrane protein, YccS/YhfK PAJ_RS16010 2b6028bc55c37b0ec09fbd7aa7594e10 691 PANTHER PTHR30509:SF4 1 689 0.0 T 14-09-2016 PAJ_RS16010 2b6028bc55c37b0ec09fbd7aa7594e10 691 Pfam PF12805 FUSC-like inner membrane protein yccS 63 335 7.1E-71 T 14-09-2016 IPR032692 Integral membrane protein YccS, N-terminal PAJ_RS11035 d85c769f37f6ab404fdb53dd849c4b68 396 Pfam PF13412 Winged helix-turn-helix DNA-binding 24 67 4.1E-5 T 14-09-2016 PAJ_RS11035 d85c769f37f6ab404fdb53dd849c4b68 396 PANTHER PTHR18964 69 381 9.9E-31 T 14-09-2016 PAJ_RS11035 d85c769f37f6ab404fdb53dd849c4b68 396 SUPERFAMILY SSF53067 91 382 6.22E-29 T 14-09-2016 PAJ_RS11035 d85c769f37f6ab404fdb53dd849c4b68 396 PANTHER PTHR18964:SF112 69 381 9.9E-31 T 14-09-2016 PAJ_RS11035 d85c769f37f6ab404fdb53dd849c4b68 396 Gene3D G3DSA:3.30.420.40 91 230 2.4E-27 T 14-09-2016 PAJ_RS11035 d85c769f37f6ab404fdb53dd849c4b68 396 Gene3D G3DSA:1.10.10.10 26 87 5.1E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11035 d85c769f37f6ab404fdb53dd849c4b68 396 Pfam PF00480 ROK family 98 252 2.5E-21 T 14-09-2016 IPR000600 ROK family PAJ_RS11035 d85c769f37f6ab404fdb53dd849c4b68 396 SUPERFAMILY SSF46785 25 80 1.53E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11035 d85c769f37f6ab404fdb53dd849c4b68 396 Gene3D G3DSA:3.30.420.40 231 334 2.4E-13 T 14-09-2016 PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 1.7E-18 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 Gene3D G3DSA:3.40.190.10 103 184 8.6E-18 T 14-09-2016 PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 PANTHER PTHR30419:SF10 6 303 2.4E-132 T 14-09-2016 PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 Gene3D G3DSA:3.40.190.10 185 274 3.1E-9 T 14-09-2016 PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 SUPERFAMILY SSF53850 102 304 1.45E-32 T 14-09-2016 PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 SUPERFAMILY SSF46785 10 121 2.05E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 Gene3D G3DSA:1.10.10.10 10 90 1.2E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 Pfam PF03466 LysR substrate binding domain 102 303 3.6E-32 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 2.0E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 2.0E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 2.0E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS07320 4c12d472051c098b08cacfc360aba9c5 306 PANTHER PTHR30419 6 303 2.4E-132 T 14-09-2016 PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 SUPERFAMILY SSF52096 213 288 8.29E-28 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 SUPERFAMILY SSF52096 55 182 8.29E-28 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 PIRSF PIRSF001217 8 620 2.7E-214 T 14-09-2016 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 611 2.3E-233 T 14-09-2016 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 PANTHER PTHR33209 1 616 4.1E-223 T 14-09-2016 PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 SUPERFAMILY SSF52096 470 532 1.04E-41 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 SUPERFAMILY SSF52096 320 442 1.04E-41 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 Pfam PF01343 Peptidase family S49 394 544 1.1E-48 T 14-09-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 Pfam PF01343 Peptidase family S49 142 294 1.5E-39 T 14-09-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 Gene3D G3DSA:3.90.226.10 221 317 2.7E-66 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 Gene3D G3DSA:3.90.226.10 325 434 5.4E-67 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 Gene3D G3DSA:3.90.226.10 31 178 2.7E-66 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 Gene3D G3DSA:3.90.226.10 471 554 5.4E-67 T 14-09-2016 IPR029045 ClpP/crotonase-like domain PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 329 543 6.2E-52 T 14-09-2016 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 PAJ_RS07910 b4a8cb99d750830b001e5a6993f21d2c 620 PANTHER PTHR33209:SF1 1 616 4.1E-223 T 14-09-2016 PAJ_RS11125 6f820e485f6fa63926bf2438f2992913 406 PANTHER PTHR11360:SF3 8 397 2.2E-85 T 14-09-2016 PAJ_RS11125 6f820e485f6fa63926bf2438f2992913 406 SUPERFAMILY SSF103473 8 391 3.66E-45 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS11125 6f820e485f6fa63926bf2438f2992913 406 Gene3D G3DSA:1.20.1250.20 11 191 1.0E-18 T 14-09-2016 PAJ_RS11125 6f820e485f6fa63926bf2438f2992913 406 Gene3D G3DSA:1.20.1250.20 217 393 2.7E-15 T 14-09-2016 PAJ_RS11125 6f820e485f6fa63926bf2438f2992913 406 PANTHER PTHR11360 8 397 2.2E-85 T 14-09-2016 PAJ_RS11125 6f820e485f6fa63926bf2438f2992913 406 Pfam PF07690 Major Facilitator Superfamily 22 233 4.0E-17 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS06280 c0d0a433cc36af1fc61f7501c82935ec 786 PANTHER PTHR30451 1 706 1.1E-14 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 SUPERFAMILY SSF160544 252 355 1.57E-40 T 14-09-2016 IPR029025 Type III secretion system substrate exporter, C-terminal PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 8.7E-126 T 14-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 1.9E-42 T 14-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 1.9E-42 T 14-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 1.9E-42 T 14-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 1.9E-42 T 14-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 1.9E-42 T 14-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 353 4.7E-135 T 14-09-2016 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 PANTHER PTHR30531 5 361 1.1E-145 T 14-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 Gene3D G3DSA:3.40.1690.10 218 357 2.9E-64 T 14-09-2016 IPR029025 Type III secretion system substrate exporter, C-terminal PAJ_RS08480 b04267f1f7c983620d11583ca5214f9e 383 PANTHER PTHR30531:SF0 5 361 1.1E-145 T 14-09-2016 PAJ_RS01300 b28ef624c642f915f693316b30f6c28a 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 5.1E-15 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS01300 b28ef624c642f915f693316b30f6c28a 300 SUPERFAMILY SSF53850 87 290 7.76E-42 T 14-09-2016 PAJ_RS01300 b28ef624c642f915f693316b30f6c28a 300 PANTHER PTHR30118 4 294 7.3E-89 T 14-09-2016 PAJ_RS01300 b28ef624c642f915f693316b30f6c28a 300 Gene3D G3DSA:1.10.10.10 2 81 6.1E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01300 b28ef624c642f915f693316b30f6c28a 300 Gene3D G3DSA:3.40.190.10 170 264 2.6E-26 T 14-09-2016 PAJ_RS01300 b28ef624c642f915f693316b30f6c28a 300 Gene3D G3DSA:3.40.190.10 268 293 6.4E-29 T 14-09-2016 PAJ_RS01300 b28ef624c642f915f693316b30f6c28a 300 Gene3D G3DSA:3.40.190.10 87 169 6.4E-29 T 14-09-2016 PAJ_RS01300 b28ef624c642f915f693316b30f6c28a 300 PANTHER PTHR30118:SF7 4 294 7.3E-89 T 14-09-2016 PAJ_RS01300 b28ef624c642f915f693316b30f6c28a 300 SUPERFAMILY SSF46785 2 81 4.46E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS01300 b28ef624c642f915f693316b30f6c28a 300 Pfam PF03466 LysR substrate binding domain 95 291 4.8E-29 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS09075 2c03db178d7daa9863d367dddb5ac854 162 PANTHER PTHR11527 38 158 1.8E-28 T 14-09-2016 IPR031107 Small heat shock protein HSP20 PAJ_RS09075 2c03db178d7daa9863d367dddb5ac854 162 SUPERFAMILY SSF49764 17 150 2.16E-18 T 14-09-2016 IPR008978 HSP20-like chaperone PAJ_RS09075 2c03db178d7daa9863d367dddb5ac854 162 Gene3D G3DSA:2.60.40.790 14 151 9.5E-20 T 14-09-2016 IPR008978 HSP20-like chaperone PAJ_RS09075 2c03db178d7daa9863d367dddb5ac854 162 Pfam PF00011 Hsp20/alpha crystallin family 48 150 1.3E-15 T 14-09-2016 IPR002068 Alpha crystallin/Hsp20 domain PAJ_RS09075 2c03db178d7daa9863d367dddb5ac854 162 PANTHER PTHR11527:SF127 38 158 1.8E-28 T 14-09-2016 PAJ_RS12830 5ed6fd1fedb89a22b9034a1e00d7632c 253 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 6.5E-78 T 14-09-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 PAJ_RS12830 5ed6fd1fedb89a22b9034a1e00d7632c 253 Pfam PF01975 Survival protein SurE 3 180 9.9E-57 T 14-09-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 PAJ_RS12830 5ed6fd1fedb89a22b9034a1e00d7632c 253 Gene3D G3DSA:3.40.1210.10 1 248 4.7E-85 T 14-09-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 PAJ_RS12830 5ed6fd1fedb89a22b9034a1e00d7632c 253 SUPERFAMILY SSF64167 1 247 2.35E-82 T 14-09-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 PAJ_RS12830 5ed6fd1fedb89a22b9034a1e00d7632c 253 PANTHER PTHR30457 1 249 1.2E-99 T 14-09-2016 PAJ_RS12830 5ed6fd1fedb89a22b9034a1e00d7632c 253 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 249 39.685 T 14-09-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 Gene3D G3DSA:3.40.50.1100 80 333 3.0E-78 T 14-09-2016 PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 Gene3D G3DSA:3.40.1020.10 339 512 6.1E-57 T 14-09-2016 PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 SUPERFAMILY SSF55021 420 512 4.35E-26 T 14-09-2016 PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 14-09-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 SUPERFAMILY SSF55021 336 423 3.97E-29 T 14-09-2016 PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 15 512 1.9E-260 T 14-09-2016 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 30 316 5.4E-78 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 PANTHER PTHR10314:SF30 21 368 1.3E-194 T 14-09-2016 PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 SUPERFAMILY SSF53686 15 365 3.14E-100 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 425 512 3.2E-26 T 14-09-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 419 4.1E-30 T 14-09-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 PAJ_RS16870 888920a2ab8d826de3878a8d304f87b4 515 PANTHER PTHR10314 21 368 1.3E-194 T 14-09-2016 PAJ_RS14540 2e731c406d41ae9c44b7f144f914f772 141 PANTHER PTHR38774 1 139 1.2E-60 T 14-09-2016 PAJ_RS14540 2e731c406d41ae9c44b7f144f914f772 141 Pfam PF06853 Protein of unknown function (DUF1249) 22 135 1.2E-42 T 14-09-2016 IPR009659 Protein of unknown function DUF1249 PAJ_RS14540 2e731c406d41ae9c44b7f144f914f772 141 PANTHER PTHR38774:SF1 1 139 1.2E-60 T 14-09-2016 PAJ_RS17915 3b543ba3ed0e05bfc46732f994f111ac 303 PANTHER PTHR32322 4 296 1.5E-87 T 14-09-2016 PAJ_RS17915 3b543ba3ed0e05bfc46732f994f111ac 303 SUPERFAMILY SSF103481 42 134 2.35E-11 T 14-09-2016 PAJ_RS17915 3b543ba3ed0e05bfc46732f994f111ac 303 PANTHER PTHR32322:SF9 4 296 1.5E-87 T 14-09-2016 PAJ_RS17915 3b543ba3ed0e05bfc46732f994f111ac 303 Pfam PF00892 EamA-like transporter family 147 287 9.8E-19 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS17915 3b543ba3ed0e05bfc46732f994f111ac 303 Pfam PF00892 EamA-like transporter family 6 131 1.8E-16 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS17915 3b543ba3ed0e05bfc46732f994f111ac 303 SUPERFAMILY SSF103481 208 292 1.57E-12 T 14-09-2016 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PANTHER PTHR30381:SF1 13 369 1.3E-205 T 14-09-2016 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PRINTS PR01010 Flagellar P-ring protein signature 40 55 1.2E-86 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PRINTS PR01010 Flagellar P-ring protein signature 125 143 1.2E-86 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PRINTS PR01010 Flagellar P-ring protein signature 191 209 1.2E-86 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PRINTS PR01010 Flagellar P-ring protein signature 25 40 1.2E-86 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PRINTS PR01010 Flagellar P-ring protein signature 108 125 1.2E-86 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PRINTS PR01010 Flagellar P-ring protein signature 165 183 1.2E-86 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PRINTS PR01010 Flagellar P-ring protein signature 60 75 1.2E-86 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PRINTS PR01010 Flagellar P-ring protein signature 86 105 1.2E-86 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PRINTS PR01010 Flagellar P-ring protein signature 255 267 1.2E-86 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 PANTHER PTHR30381 13 369 1.3E-205 T 14-09-2016 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 Hamap MF_00416 Flagellar P-ring protein [flgI]. 8 369 37.61 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS04485 e5142d7a780d57a8ba1ee22aaf69d816 369 Pfam PF02119 Flagellar P-ring protein 26 368 4.4E-134 T 14-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PAJ_RS09405 c3dd2a39c9b507112371e336a4f55011 378 Pfam PF07969 Amidohydrolase family 172 378 1.2E-12 T 14-09-2016 IPR013108 Amidohydrolase 3 PAJ_RS09405 c3dd2a39c9b507112371e336a4f55011 378 SUPERFAMILY SSF51556 50 345 2.21E-22 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS09405 c3dd2a39c9b507112371e336a4f55011 378 PANTHER PTHR11271:SF43 1 378 1.9E-163 T 14-09-2016 PAJ_RS09405 c3dd2a39c9b507112371e336a4f55011 378 SUPERFAMILY SSF51338 2 49 6.17E-8 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS09405 c3dd2a39c9b507112371e336a4f55011 378 SUPERFAMILY SSF51338 345 378 6.17E-8 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS09405 c3dd2a39c9b507112371e336a4f55011 378 PANTHER PTHR11271 1 378 1.9E-163 T 14-09-2016 PAJ_RS09405 c3dd2a39c9b507112371e336a4f55011 378 Gene3D G3DSA:3.20.20.140 284 378 4.7E-10 T 14-09-2016 PAJ_RS09405 c3dd2a39c9b507112371e336a4f55011 378 Gene3D G3DSA:2.30.40.10 1 94 8.4E-8 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS09405 c3dd2a39c9b507112371e336a4f55011 378 PIRSF PIRSF038971 1 378 2.5E-146 T 14-09-2016 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 PAJ_RS09405 c3dd2a39c9b507112371e336a4f55011 378 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 2 378 4.9E-154 T 14-09-2016 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 PAJ_RS20925 5b04cb2b8baa997f7179b3fca748f1d0 238 PANTHER PTHR26402 4 238 1.7E-151 T 14-09-2016 PAJ_RS20925 5b04cb2b8baa997f7179b3fca748f1d0 238 SMART SM00862 156 232 7.1E-15 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS20925 5b04cb2b8baa997f7179b3fca748f1d0 238 Gene3D G3DSA:1.10.10.10 134 233 1.8E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20925 5b04cb2b8baa997f7179b3fca748f1d0 238 Pfam PF00072 Response regulator receiver domain 6 113 1.6E-26 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS20925 5b04cb2b8baa997f7179b3fca748f1d0 238 SMART SM00448 4 114 2.3E-37 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS20925 5b04cb2b8baa997f7179b3fca748f1d0 238 PANTHER PTHR26402:SF586 4 238 1.7E-151 T 14-09-2016 PAJ_RS20925 5b04cb2b8baa997f7179b3fca748f1d0 238 SUPERFAMILY SSF46894 136 234 8.5E-22 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS20925 5b04cb2b8baa997f7179b3fca748f1d0 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 4.8E-18 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS20925 5b04cb2b8baa997f7179b3fca748f1d0 238 SUPERFAMILY SSF52172 2 122 5.83E-35 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS20925 5b04cb2b8baa997f7179b3fca748f1d0 238 Gene3D G3DSA:3.40.50.2300 2 121 2.7E-34 T 14-09-2016 PAJ_RS12525 91180c2c82f37ff5f80998b2402bb20f 383 PANTHER PTHR30177 88 372 1.4E-138 T 14-09-2016 PAJ_RS12525 91180c2c82f37ff5f80998b2402bb20f 383 PANTHER PTHR30177:SF2 88 372 1.4E-138 T 14-09-2016 PAJ_RS12525 91180c2c82f37ff5f80998b2402bb20f 383 Gene3D G3DSA:1.10.3720.10 168 353 4.5E-44 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12525 91180c2c82f37ff5f80998b2402bb20f 383 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 191 351 5.8E-26 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12525 91180c2c82f37ff5f80998b2402bb20f 383 SUPERFAMILY SSF161098 170 352 1.57E-42 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 SMART SM01011 1 136 3.6E-57 T 14-09-2016 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 348 360 - T 14-09-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 SUPERFAMILY SSF53092 2 174 1.52E-52 T 14-09-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 PANTHER PTHR10804:SF17 1 434 2.3E-159 T 14-09-2016 PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 SUPERFAMILY SSF55920 175 434 8.64E-86 T 14-09-2016 IPR000994 Peptidase M24, structural domain PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 PANTHER PTHR10804 1 434 2.3E-159 T 14-09-2016 PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 Pfam PF00557 Metallopeptidase family M24 182 412 1.3E-65 T 14-09-2016 IPR000994 Peptidase M24, structural domain PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 PRINTS PR00599 Methionine aminopeptidase-1 signature 253 269 2.5E-5 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 PRINTS PR00599 Methionine aminopeptidase-1 signature 371 383 2.5E-5 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 126 1.5E-35 T 14-09-2016 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 Gene3D G3DSA:3.40.350.10 2 178 6.6E-53 T 14-09-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PAJ_RS13335 f4870d2cd7092bce58f94060feb5b23c 439 Gene3D G3DSA:3.90.230.10 179 434 1.2E-87 T 14-09-2016 IPR000994 Peptidase M24, structural domain PAJ_RS09055 acdab279b789f086bac0e012cdeb5054 336 PANTHER PTHR30472 3 336 8.3E-101 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS09055 acdab279b789f086bac0e012cdeb5054 336 SUPERFAMILY SSF81345 5 332 1.83E-76 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS09055 acdab279b789f086bac0e012cdeb5054 336 Pfam PF01032 FecCD transport family 18 332 6.8E-85 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS09055 acdab279b789f086bac0e012cdeb5054 336 Gene3D G3DSA:1.10.3470.10 7 333 2.6E-93 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS09055 acdab279b789f086bac0e012cdeb5054 336 PANTHER PTHR30472:SF32 3 336 8.3E-101 T 14-09-2016 PAJ_RS05630 f87c8ca8db8dc26e6307f34e0318d9d8 203 PIRSF PIRSF033535 4 203 2.3E-29 T 14-09-2016 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein PAJ_RS05630 f87c8ca8db8dc26e6307f34e0318d9d8 203 Pfam PF10054 Predicted periplasmic lipoprotein (DUF2291) 10 200 9.7E-50 T 14-09-2016 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein PAJ_RS05630 f87c8ca8db8dc26e6307f34e0318d9d8 203 SUPERFAMILY SSF141318 41 187 9.29E-18 T 14-09-2016 PAJ_RS06900 787edf474aebea8cff04af43a34a3f86 386 PANTHER PTHR30032 1 188 1.4E-94 T 14-09-2016 PAJ_RS06900 787edf474aebea8cff04af43a34a3f86 386 PANTHER PTHR30032 208 372 1.4E-94 T 14-09-2016 PAJ_RS06900 787edf474aebea8cff04af43a34a3f86 386 SUPERFAMILY SSF51445 25 307 6.0E-31 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS06900 787edf474aebea8cff04af43a34a3f86 386 Pfam PF02638 Glycosyl hydrolase-like 10 1 334 9.6E-122 T 14-09-2016 IPR003790 Glycosyl hydrolase-like 10 PAJ_RS06900 787edf474aebea8cff04af43a34a3f86 386 PANTHER PTHR30032:SF2 1 188 1.4E-94 T 14-09-2016 PAJ_RS06900 787edf474aebea8cff04af43a34a3f86 386 PANTHER PTHR30032:SF2 208 372 1.4E-94 T 14-09-2016 PAJ_RS06900 787edf474aebea8cff04af43a34a3f86 386 Gene3D G3DSA:3.20.20.80 34 269 5.1E-8 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS12415 c958c174327ad0b9560251fa50a8b51a 345 SUPERFAMILY SSF81345 12 341 1.12E-76 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS12415 c958c174327ad0b9560251fa50a8b51a 345 Pfam PF01032 FecCD transport family 25 341 1.7E-87 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS12415 c958c174327ad0b9560251fa50a8b51a 345 Gene3D G3DSA:1.10.3470.10 15 344 1.9E-98 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS12415 c958c174327ad0b9560251fa50a8b51a 345 PANTHER PTHR30472 1 345 2.1E-94 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS12415 c958c174327ad0b9560251fa50a8b51a 345 PANTHER PTHR30472:SF3 1 345 2.1E-94 T 14-09-2016 PAJ_RS17195 9b26dc1ecf820c6700ca913565ac2ead 303 Gene3D G3DSA:3.20.20.370 18 244 2.7E-103 T 14-09-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PAJ_RS17195 9b26dc1ecf820c6700ca913565ac2ead 303 PANTHER PTHR30105 15 255 9.9E-91 T 14-09-2016 PAJ_RS17195 9b26dc1ecf820c6700ca913565ac2ead 303 Pfam PF04748 Divergent polysaccharide deacetylase 28 237 4.3E-75 T 14-09-2016 IPR006837 Protein of unknown function DUF610, YibQ PAJ_RS17195 9b26dc1ecf820c6700ca913565ac2ead 303 SUPERFAMILY SSF88713 25 238 4.67E-71 T 14-09-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PAJ_RS17920 1c715e6bde87712aeab5bec5b56f2a46 312 PANTHER PTHR35563 10 308 4.0E-72 T 14-09-2016 PAJ_RS17920 1c715e6bde87712aeab5bec5b56f2a46 312 SUPERFAMILY SSF51556 41 307 1.11E-73 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS17920 1c715e6bde87712aeab5bec5b56f2a46 312 Gene3D G3DSA:3.20.20.140 26 308 3.1E-94 T 14-09-2016 PAJ_RS17920 1c715e6bde87712aeab5bec5b56f2a46 312 Pfam PF04909 Amidohydrolase 45 306 1.6E-38 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 PAJ_RS17920 1c715e6bde87712aeab5bec5b56f2a46 312 PANTHER PTHR35563:SF1 10 308 4.0E-72 T 14-09-2016 PAJ_RS11315 43d683fd74aca667088eaaef363756ec 253 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 15 229 7.4E-43 T 14-09-2016 PAJ_RS11315 43d683fd74aca667088eaaef363756ec 253 PANTHER PTHR37468 2 253 3.6E-104 T 14-09-2016 PAJ_RS11315 43d683fd74aca667088eaaef363756ec 253 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 9 249 28.98 T 14-09-2016 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 PAJ_RS11475 546ef7ce3b1c3d4a307b59b0d26cd87d 230 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 134 156 - T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PAJ_RS11475 546ef7ce3b1c3d4a307b59b0d26cd87d 230 PANTHER PTHR11749 1 223 3.7E-78 T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PAJ_RS11475 546ef7ce3b1c3d4a307b59b0d26cd87d 230 SUPERFAMILY SSF51366 2 216 1.67E-52 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PAJ_RS11475 546ef7ce3b1c3d4a307b59b0d26cd87d 230 Gene3D G3DSA:3.20.20.70 4 224 2.3E-71 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS11475 546ef7ce3b1c3d4a307b59b0d26cd87d 230 PANTHER PTHR11749:SF3 1 223 3.7E-78 T 14-09-2016 PAJ_RS11475 546ef7ce3b1c3d4a307b59b0d26cd87d 230 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PAJ_RS11475 546ef7ce3b1c3d4a307b59b0d26cd87d 230 Pfam PF00834 Ribulose-phosphate 3 epimerase family 5 198 2.0E-59 T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PAJ_RS12530 79ec1613d962bc8423a5632409f49111 332 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 313 2.1E-52 T 14-09-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 PAJ_RS12530 79ec1613d962bc8423a5632409f49111 332 SUPERFAMILY SSF53850 25 330 2.72E-89 T 14-09-2016 PAJ_RS12530 79ec1613d962bc8423a5632409f49111 332 Gene3D G3DSA:3.40.190.10 265 330 1.0E-53 T 14-09-2016 PAJ_RS12530 79ec1613d962bc8423a5632409f49111 332 Gene3D G3DSA:3.40.190.10 24 113 1.0E-53 T 14-09-2016 PAJ_RS12530 79ec1613d962bc8423a5632409f49111 332 Gene3D G3DSA:3.40.190.100 114 264 2.3E-53 T 14-09-2016 PAJ_RS08105 67e4bc891be6dc2ef2744d94671b073b 266 PANTHER PTHR32502 1 266 7.1E-171 T 14-09-2016 PAJ_RS08105 67e4bc891be6dc2ef2744d94671b073b 266 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 266 1.3E-127 T 14-09-2016 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit GO:0009401|GO:0016021 PAJ_RS08105 67e4bc891be6dc2ef2744d94671b073b 266 Pfam PF03609 PTS system sorbose-specific iic component 6 237 5.8E-76 T 14-09-2016 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit GO:0009401|GO:0016021 PAJ_RS08105 67e4bc891be6dc2ef2744d94671b073b 266 PANTHER PTHR32502:SF4 1 266 7.1E-171 T 14-09-2016 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit GO:0009401|GO:0016021 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 416 36.362 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 51 69 - T 14-09-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PANTHER PTHR11482:SF5 16 416 1.8E-138 T 14-09-2016 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 8 416 3.7E-122 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 291 309 5.3E-23 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 69 86 5.3E-23 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 155 164 5.3E-23 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 384 406 5.3E-23 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 278 393 3.8E-16 T 14-09-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 SUPERFAMILY SSF50621 249 416 9.0E-54 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 Gene3D G3DSA:2.40.37.10 261 416 1.1E-53 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 36 273 1.6E-54 T 14-09-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 214 227 - T 14-09-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 SUPERFAMILY SSF51419 26 275 4.36E-55 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 Gene3D G3DSA:3.20.20.10 47 260 1.0E-61 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PANTHER PTHR11482 16 416 1.8E-138 T 14-09-2016 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 71 83 1.7E-19 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 374 387 1.7E-19 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 263 282 1.7E-19 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 51 69 1.7E-19 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PAJ_RS13225 1c46a2c4f9001cd1133594d50afa8a8d 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 180 193 1.7E-19 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PAJ_RS05690 b0085d9346778fedfb7b0f820d6f55e4 287 SMART SM00465 34 112 3.7E-12 T 14-09-2016 IPR000305 GIY-YIG nuclease superfamily PAJ_RS05690 b0085d9346778fedfb7b0f820d6f55e4 287 PANTHER PTHR30562 1 284 2.0E-148 T 14-09-2016 PAJ_RS05690 b0085d9346778fedfb7b0f820d6f55e4 287 SUPERFAMILY SSF82771 33 111 8.5E-10 T 14-09-2016 IPR000305 GIY-YIG nuclease superfamily PAJ_RS05690 b0085d9346778fedfb7b0f820d6f55e4 287 PANTHER PTHR30562:SF10 1 284 2.0E-148 T 14-09-2016 PAJ_RS01090 0e7d23001dcaef0ae7d4134c8fab1ba7 399 PANTHER PTHR34273 1 397 4.0E-124 T 14-09-2016 PAJ_RS01090 0e7d23001dcaef0ae7d4134c8fab1ba7 399 Hamap MF_01683 Methylthioribose kinase [mtnK]. 1 399 199.75 T 14-09-2016 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754|UniPathway: UPA00904 PAJ_RS01090 0e7d23001dcaef0ae7d4134c8fab1ba7 399 SUPERFAMILY SSF56112 1 397 1.91E-89 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS01090 0e7d23001dcaef0ae7d4134c8fab1ba7 399 Gene3D G3DSA:3.90.1200.10 97 270 1.3E-7 T 14-09-2016 PAJ_RS01090 0e7d23001dcaef0ae7d4134c8fab1ba7 399 PANTHER PTHR34273:SF2 1 397 4.0E-124 T 14-09-2016 PAJ_RS01090 0e7d23001dcaef0ae7d4134c8fab1ba7 399 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 33 397 2.2E-164 T 14-09-2016 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754|UniPathway: UPA00904 PAJ_RS01090 0e7d23001dcaef0ae7d4134c8fab1ba7 399 Pfam PF01636 Phosphotransferase enzyme family 31 263 8.5E-10 T 14-09-2016 IPR002575 Aminoglycoside phosphotransferase PAJ_RS01090 0e7d23001dcaef0ae7d4134c8fab1ba7 399 PIRSF PIRSF031134 1 399 4.6E-157 T 14-09-2016 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754|UniPathway: UPA00904 PAJ_RS18430 e2632b91e58b72145f40a97a35ea1942 125 PANTHER PTHR33204:SF15 2 118 7.0E-42 T 14-09-2016 PAJ_RS18430 e2632b91e58b72145f40a97a35ea1942 125 SUPERFAMILY SSF46785 11 113 1.57E-34 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18430 e2632b91e58b72145f40a97a35ea1942 125 Pfam PF01638 HxlR-like helix-turn-helix 24 110 1.0E-26 T 14-09-2016 IPR002577 Helix-turn-helix, HxlR type PAJ_RS18430 e2632b91e58b72145f40a97a35ea1942 125 Gene3D G3DSA:1.10.10.10 11 118 5.4E-42 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18430 e2632b91e58b72145f40a97a35ea1942 125 PANTHER PTHR33204 2 118 7.0E-42 T 14-09-2016 PAJ_RS07355 35d2a11b7d35146f3376d37d7cb60649 462 Pfam PF13520 Amino acid permease 5 408 8.3E-73 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS07355 35d2a11b7d35146f3376d37d7cb60649 462 PANTHER PTHR11785 1 461 7.3E-216 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS07355 35d2a11b7d35146f3376d37d7cb60649 462 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 461 1.8E-167 T 14-09-2016 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 PAJ_RS07355 35d2a11b7d35146f3376d37d7cb60649 462 PANTHER PTHR11785:SF77 1 461 7.3E-216 T 14-09-2016 PAJ_RS07355 35d2a11b7d35146f3376d37d7cb60649 462 PIRSF PIRSF006060 1 452 3.4E-48 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS20870 74a816b7d894176c4cb3f687f2b8a20b 521 Gene3D G3DSA:1.25.10.10 113 218 1.1E-7 T 14-09-2016 IPR011989 Armadillo-like helical PAJ_RS20870 74a816b7d894176c4cb3f687f2b8a20b 521 PANTHER PTHR11795 93 521 1.1E-172 T 14-09-2016 PAJ_RS20870 74a816b7d894176c4cb3f687f2b8a20b 521 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 227 518 1.0E-129 T 14-09-2016 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type PAJ_RS20870 74a816b7d894176c4cb3f687f2b8a20b 521 PANTHER PTHR11795:SF349 93 521 1.1E-172 T 14-09-2016 PAJ_RS20870 74a816b7d894176c4cb3f687f2b8a20b 521 SUPERFAMILY SSF48371 111 217 3.37E-9 T 14-09-2016 IPR016024 Armadillo-type fold GO:0005488 PAJ_RS20870 74a816b7d894176c4cb3f687f2b8a20b 521 Pfam PF02653 Branched-chain amino acid transport system / permease component 229 504 2.3E-55 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 PANTHER PTHR11686 10 528 1.4E-156 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 PANTHER PTHR11686:SF8 10 528 1.4E-156 T 14-09-2016 PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 32 57 1.3E-21 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 342 360 1.3E-21 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 222 238 1.3E-21 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 397 412 1.3E-21 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 124 143 1.3E-21 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 251 270 1.3E-21 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 366 384 1.3E-21 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 SUPERFAMILY SSF56235 6 528 8.68E-151 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS01005 88c170cd8977514b5eaf69b9ae73ddb0 528 Pfam PF01019 Gamma-glutamyltranspeptidase 25 523 1.2E-134 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PAJ_RS17905 98bf363a9e4411f3b3e38913e72fa01f 324 PANTHER PTHR10996 1 323 4.9E-151 T 14-09-2016 PAJ_RS17905 98bf363a9e4411f3b3e38913e72fa01f 324 Gene3D G3DSA:3.40.50.720 114 287 4.7E-68 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17905 98bf363a9e4411f3b3e38913e72fa01f 324 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PAJ_RS17905 98bf363a9e4411f3b3e38913e72fa01f 324 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 287 2.2E-63 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PAJ_RS17905 98bf363a9e4411f3b3e38913e72fa01f 324 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 319 1.3E-26 T 14-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PAJ_RS17905 98bf363a9e4411f3b3e38913e72fa01f 324 SUPERFAMILY SSF52283 1 134 7.56E-29 T 14-09-2016 PAJ_RS17905 98bf363a9e4411f3b3e38913e72fa01f 324 Gene3D G3DSA:3.40.50.720 2 113 2.5E-30 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17905 98bf363a9e4411f3b3e38913e72fa01f 324 SUPERFAMILY SSF51735 100 288 2.51E-60 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17905 98bf363a9e4411f3b3e38913e72fa01f 324 PANTHER PTHR10996:SF118 1 323 4.9E-151 T 14-09-2016 PAJ_RS10500 bcbde488f7e60b569a58198fb026c7b8 384 Pfam PF07690 Major Facilitator Superfamily 22 324 8.3E-20 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS10500 bcbde488f7e60b569a58198fb026c7b8 384 Gene3D G3DSA:1.20.1250.20 23 193 6.4E-17 T 14-09-2016 PAJ_RS10500 bcbde488f7e60b569a58198fb026c7b8 384 PANTHER PTHR23514 9 384 1.8E-116 T 14-09-2016 PAJ_RS10500 bcbde488f7e60b569a58198fb026c7b8 384 SUPERFAMILY SSF103473 5 379 2.49E-40 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS10500 bcbde488f7e60b569a58198fb026c7b8 384 Gene3D G3DSA:1.20.1250.20 210 377 1.1E-12 T 14-09-2016 PAJ_RS10500 bcbde488f7e60b569a58198fb026c7b8 384 PANTHER PTHR23514:SF13 9 384 1.8E-116 T 14-09-2016 PAJ_RS19605 24a50d80e3d31c9d7184ca1a10e5dead 433 PANTHER PTHR36106 1 433 1.2E-256 T 14-09-2016 PAJ_RS19605 24a50d80e3d31c9d7184ca1a10e5dead 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 365 4.0E-150 T 14-09-2016 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 PAJ_RS19605 24a50d80e3d31c9d7184ca1a10e5dead 433 PANTHER PTHR36106:SF2 1 433 1.2E-256 T 14-09-2016 PAJ_RS19605 24a50d80e3d31c9d7184ca1a10e5dead 433 PIRSF PIRSF004539 1 433 8.9E-177 T 14-09-2016 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 PAJ_RS19605 24a50d80e3d31c9d7184ca1a10e5dead 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 432 9.7E-191 T 14-09-2016 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 PAJ_RS18160 5db0e873e203148d569709143e465706 342 Gene3D G3DSA:3.40.50.300 11 262 9.0E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18160 5db0e873e203148d569709143e465706 342 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS18160 5db0e873e203148d569709143e465706 342 PANTHER PTHR24220:SF493 13 329 1.7E-212 T 14-09-2016 PAJ_RS18160 5db0e873e203148d569709143e465706 342 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 305 3.7E-18 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS18160 5db0e873e203148d569709143e465706 342 SUPERFAMILY SSF52540 12 260 1.3E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS18160 5db0e873e203148d569709143e465706 342 PANTHER PTHR24220 13 329 1.7E-212 T 14-09-2016 PAJ_RS18160 5db0e873e203148d569709143e465706 342 Pfam PF00005 ABC transporter 37 188 1.1E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS18160 5db0e873e203148d569709143e465706 342 SMART SM00382 46 238 4.5E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS18160 5db0e873e203148d569709143e465706 342 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 239 323 3.4E-25 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PAJ_RS17830 19869472247568f0e70a830979bdab37 460 PANTHER PTHR10353:SF73 1 460 3.2E-298 T 14-09-2016 PAJ_RS17830 19869472247568f0e70a830979bdab37 460 Pfam PF00232 Glycosyl hydrolase family 1 3 459 1.2E-129 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS17830 19869472247568f0e70a830979bdab37 460 PANTHER PTHR10353 1 460 3.2E-298 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS17830 19869472247568f0e70a830979bdab37 460 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 360 368 - T 14-09-2016 IPR018120 Glycoside hydrolase family 1, active site PAJ_RS17830 19869472247568f0e70a830979bdab37 460 SUPERFAMILY SSF51445 2 454 3.73E-153 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS17830 19869472247568f0e70a830979bdab37 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 2.1E-14 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS17830 19869472247568f0e70a830979bdab37 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 404 421 2.1E-14 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS17830 19869472247568f0e70a830979bdab37 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 383 394 2.1E-14 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS17830 19869472247568f0e70a830979bdab37 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 428 440 2.1E-14 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS17830 19869472247568f0e70a830979bdab37 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 360 368 2.1E-14 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 PAJ_RS17830 19869472247568f0e70a830979bdab37 460 Gene3D G3DSA:3.20.20.80 3 459 1.7E-140 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS20690 ccc7dcd42ae772e7831e6445962efb61 154 PANTHER PTHR30411 1 152 7.3E-70 T 14-09-2016 PAJ_RS20690 ccc7dcd42ae772e7831e6445962efb61 154 SUPERFAMILY SSF55826 4 152 9.42E-42 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS20690 ccc7dcd42ae772e7831e6445962efb61 154 Gene3D G3DSA:3.90.960.10 1 152 1.1E-48 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS20690 ccc7dcd42ae772e7831e6445962efb61 154 Pfam PF04073 Aminoacyl-tRNA editing domain 26 141 4.3E-28 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS20690 ccc7dcd42ae772e7831e6445962efb61 154 PANTHER PTHR30411:SF6 1 152 7.3E-70 T 14-09-2016 PAJ_RS19320 ee85357eb65492b33a0fd589b97bb720 144 PANTHER PTHR30574 9 136 1.2E-39 T 14-09-2016 PAJ_RS19320 ee85357eb65492b33a0fd589b97bb720 144 PANTHER PTHR30574:SF1 9 136 1.2E-39 T 14-09-2016 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 156 176 1.5E-12 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 1.5E-12 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 107 120 1.5E-12 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 138 154 1.5E-12 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 11 222 4.4E-73 T 14-09-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 PANTHER PTHR18901:SF14 1 223 1.2E-71 T 14-09-2016 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 Gene3D G3DSA:3.40.50.1000 85 223 4.5E-43 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 7 224 34.078 T 14-09-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 SUPERFAMILY SSF56784 7 223 4.26E-57 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 Gene3D G3DSA:1.10.150.240 22 84 3.1E-22 T 14-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 96 188 1.7E-10 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 193 2.9E-34 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 72 193 3.2E-10 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16050 7ec7516e1620f7a62c6b731524fb440e 225 PANTHER PTHR18901 1 223 1.2E-71 T 14-09-2016 PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 Gene3D G3DSA:3.40.190.10 97 190 2.8E-16 T 14-09-2016 PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 Pfam PF03466 LysR substrate binding domain 97 277 2.5E-28 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 PANTHER PTHR30579 6 299 2.0E-205 T 14-09-2016 PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 SUPERFAMILY SSF46785 11 119 2.13E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 Gene3D G3DSA:1.10.10.10 10 90 1.4E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 SUPERFAMILY SSF53850 96 288 1.15E-29 T 14-09-2016 PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 Gene3D G3DSA:3.40.190.10 191 246 5.4E-11 T 14-09-2016 PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 2.4E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 2.4E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 2.4E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 PANTHER PTHR30579:SF4 6 299 2.0E-205 T 14-09-2016 PAJ_RS10635 a6b6d1bc352221ca42b8041deaea12fc 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 6.9E-18 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS01810 7266680ab65be0d3a5efc44d434c6388 125 Pfam PF10757 Biofilm formation regulator YbaJ 1 115 1.3E-58 T 14-09-2016 IPR019693 Biofilm formation regulator YbaJ PAJ_RS02505 b038a0a2124a24838c3bb08c58380aec 507 PANTHER PTHR38686 2 503 3.9E-143 T 14-09-2016 PAJ_RS02505 b038a0a2124a24838c3bb08c58380aec 507 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 10 494 23.48 T 14-09-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 PAJ_RS02505 b038a0a2124a24838c3bb08c58380aec 507 Pfam PF00795 Carbon-nitrogen hydrolase 224 474 3.7E-34 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PAJ_RS02505 b038a0a2124a24838c3bb08c58380aec 507 Gene3D G3DSA:3.60.110.10 218 486 1.4E-18 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PAJ_RS02505 b038a0a2124a24838c3bb08c58380aec 507 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 456 1.0E-106 T 14-09-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 PAJ_RS02505 b038a0a2124a24838c3bb08c58380aec 507 SUPERFAMILY SSF56317 215 488 2.62E-34 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PAJ_RS01620 bf6c65c7d72a391edd79455fa5322251 299 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 215 227 - T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 PAJ_RS01620 bf6c65c7d72a391edd79455fa5322251 299 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 97 - T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 PAJ_RS01620 bf6c65c7d72a391edd79455fa5322251 299 PANTHER PTHR12001:SF23 1 274 1.5E-105 T 14-09-2016 PAJ_RS01620 bf6c65c7d72a391edd79455fa5322251 299 PANTHER PTHR12001 1 274 1.5E-105 T 14-09-2016 IPR017446 Polyprenyl synthetase-related PAJ_RS01620 bf6c65c7d72a391edd79455fa5322251 299 Pfam PF00348 Polyprenyl synthetase 32 265 2.9E-55 T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 PAJ_RS01620 bf6c65c7d72a391edd79455fa5322251 299 SUPERFAMILY SSF48576 1 280 9.66E-86 T 14-09-2016 IPR008949 Isoprenoid synthase domain PAJ_RS01620 bf6c65c7d72a391edd79455fa5322251 299 Gene3D G3DSA:1.10.600.10 2 296 3.1E-88 T 14-09-2016 IPR008949 Isoprenoid synthase domain PAJ_RS12635 b04ac583937422ef50c05d0635916d90 242 PANTHER PTHR30616 1 241 3.9E-121 T 14-09-2016 PAJ_RS12635 b04ac583937422ef50c05d0635916d90 242 PANTHER PTHR30616:SF3 1 241 3.9E-121 T 14-09-2016 PAJ_RS12635 b04ac583937422ef50c05d0635916d90 242 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 19 240 4.5E-76 T 14-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase PAJ_RS12635 b04ac583937422ef50c05d0635916d90 242 Gene3D G3DSA:3.60.140.10 2 241 1.2E-96 T 14-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase PAJ_RS12635 b04ac583937422ef50c05d0635916d90 242 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 241 2.3E-64 T 14-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase PAJ_RS12635 b04ac583937422ef50c05d0635916d90 242 SUPERFAMILY SSF64438 2 241 2.01E-85 T 14-09-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic PAJ_RS08715 3c0e478f014f67a0487eb87b0b08e407 288 PANTHER PTHR22572:SF105 2 269 2.2E-167 T 14-09-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 PAJ_RS08715 3c0e478f014f67a0487eb87b0b08e407 288 Pfam PF00483 Nucleotidyl transferase 2 238 1.2E-65 T 14-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 PAJ_RS08715 3c0e478f014f67a0487eb87b0b08e407 288 SUPERFAMILY SSF53448 1 287 2.48E-86 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS08715 3c0e478f014f67a0487eb87b0b08e407 288 PANTHER PTHR22572 2 269 2.2E-167 T 14-09-2016 PAJ_RS08715 3c0e478f014f67a0487eb87b0b08e407 288 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 3.1E-153 T 14-09-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 PAJ_RS08715 3c0e478f014f67a0487eb87b0b08e407 288 Gene3D G3DSA:3.90.550.10 1 265 1.5E-60 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS12110 04a8168607c9ee9277d481bd15f567b1 553 PANTHER PTHR11059 2 553 3.2E-182 T 14-09-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 PAJ_RS12110 04a8168607c9ee9277d481bd15f567b1 553 Gene3D G3DSA:3.40.50.300 426 494 7.6E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12110 04a8168607c9ee9277d481bd15f567b1 553 SUPERFAMILY SSF52540 1 217 4.78E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12110 04a8168607c9ee9277d481bd15f567b1 553 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 1.9E-168 T 14-09-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 PAJ_RS12110 04a8168607c9ee9277d481bd15f567b1 553 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 510 6.0E-19 T 14-09-2016 IPR003395 RecF/RecN/SMC, N-terminal PAJ_RS12110 04a8168607c9ee9277d481bd15f567b1 553 SUPERFAMILY SSF52540 4 50 2.56E-30 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12110 04a8168607c9ee9277d481bd15f567b1 553 SUPERFAMILY SSF52540 284 506 2.56E-30 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12110 04a8168607c9ee9277d481bd15f567b1 553 PIRSF PIRSF003128 1 553 4.4E-156 T 14-09-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 PAJ_RS12110 04a8168607c9ee9277d481bd15f567b1 553 Gene3D G3DSA:3.40.50.300 1 206 1.4E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 174 2.3E-49 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 5.7E-63 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 Gene3D G3DSA:1.10.520.20 3 104 1.0E-33 T 14-09-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 14-09-2016 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.2E-27 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.2E-27 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.2E-27 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.2E-27 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.2E-27 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 PANTHER PTHR11910 8 176 1.3E-55 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 SUPERFAMILY SSF47928 3 104 5.1E-26 T 14-09-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain PAJ_RS17640 8a6d67e20bee993b42ddcb38763b9a06 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.059 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 SMART SM01002 146 311 6.0E-84 T 14-09-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 368 2.3E-74 T 14-09-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 Gene3D G3DSA:3.40.50.1770 1 172 2.9E-67 T 14-09-2016 PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 14-09-2016 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 Gene3D G3DSA:3.40.50.1770 197 371 2.4E-48 T 14-09-2016 PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 3 510 8.3E-283 T 14-09-2016 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2 PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 SMART SM01003 4 137 2.0E-71 T 14-09-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 427 509 1.2E-35 T 14-09-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 170 195 - T 14-09-2016 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 Gene3D G3DSA:3.50.50.60 173 196 2.1E-5 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 SUPERFAMILY SSF51735 137 317 5.83E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 PANTHER PTHR10160 1 509 0.0 T 14-09-2016 PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 SUPERFAMILY SSF52283 1 168 1.02E-54 T 14-09-2016 PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 4.6E-49 T 14-09-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal PAJ_RS07345 26bb8f8444c65bf258e28d033dbc39a7 510 PIRSF PIRSF000203 1 509 8.3E-272 T 14-09-2016 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 PANTHER PTHR13789 2 390 7.3E-208 T 14-09-2016 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 1.6E-15 T 14-09-2016 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 1.6E-15 T 14-09-2016 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 1.6E-15 T 14-09-2016 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 1.6E-15 T 14-09-2016 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 Gene3D G3DSA:3.50.50.60 267 352 8.1E-47 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 Gene3D G3DSA:3.50.50.60 5 182 8.1E-47 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 PANTHER PTHR13789:SF233 2 390 7.3E-208 T 14-09-2016 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 389 1.2E-125 T 14-09-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 SUPERFAMILY SSF51905 266 383 6.88E-61 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 SUPERFAMILY SSF51905 6 177 6.88E-61 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS02530 da870d01f6e0c43a7e0b4ad09c987ad8 390 Pfam PF01494 FAD binding domain 6 338 9.2E-25 T 14-09-2016 IPR002938 FAD-binding domain GO:0071949 PAJ_RS00035 f677e9db113d4916f3d6383493651cf1 435 Gene3D G3DSA:1.20.1250.20 15 220 9.2E-20 T 14-09-2016 PAJ_RS00035 f677e9db113d4916f3d6383493651cf1 435 Gene3D G3DSA:1.20.1250.20 241 424 1.2E-15 T 14-09-2016 PAJ_RS00035 f677e9db113d4916f3d6383493651cf1 435 SUPERFAMILY SSF103473 12 420 1.57E-58 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS00035 f677e9db113d4916f3d6383493651cf1 435 PANTHER PTHR23508:SF5 8 425 2.2E-234 T 14-09-2016 PAJ_RS00035 f677e9db113d4916f3d6383493651cf1 435 PANTHER PTHR23508 8 425 2.2E-234 T 14-09-2016 PAJ_RS00035 f677e9db113d4916f3d6383493651cf1 435 Pfam PF07690 Major Facilitator Superfamily 60 366 2.7E-25 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS07925 47f002939ca5e92dc8025b816d26ad01 93 Pfam PF07023 Protein of unknown function (DUF1315) 6 82 2.2E-26 T 14-09-2016 IPR009749 Protein of unknown function DUF1315 PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 Gene3D G3DSA:3.40.190.10 180 263 2.2E-24 T 14-09-2016 PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 SUPERFAMILY SSF46785 3 84 4.83E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.2E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.2E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.2E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 4.0E-16 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 SUPERFAMILY SSF53850 93 298 3.98E-46 T 14-09-2016 PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 PANTHER PTHR30427 2 299 3.7E-142 T 14-09-2016 PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 Gene3D G3DSA:1.10.10.10 3 82 7.9E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 Pfam PF03466 LysR substrate binding domain 92 294 2.7E-47 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 PANTHER PTHR30427:SF1 2 299 3.7E-142 T 14-09-2016 PAJ_RS13230 c787727f21f9a920eed17783ad16c8bb 306 Gene3D G3DSA:3.40.190.10 93 179 2.2E-17 T 14-09-2016 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 PIRSF PIRSF006641 1 363 7.7E-159 T 14-09-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 4.2E-175 T 14-09-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 Gene3D G3DSA:3.40.50.300 4 130 7.6E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 Gene3D G3DSA:3.40.50.300 201 266 7.6E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 Gene3D G3DSA:3.10.20.30 267 363 1.1E-49 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 2.3E-39 T 14-09-2016 IPR013029 Domain of unknown function DUF933 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.3E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.3E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.3E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.3E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 46.349 T 14-09-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 Gene3D G3DSA:1.10.150.300 131 200 9.5E-29 T 14-09-2016 IPR023192 TGS-like domain PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 PANTHER PTHR23305 1 363 4.5E-216 T 14-09-2016 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 Pfam PF01926 50S ribosome-binding GTPase 5 125 1.8E-21 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 SUPERFAMILY SSF81271 279 359 1.05E-35 T 14-09-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 PAJ_RS05460 bbecbd9b2ec5776d9c5ccd29866fa3c9 363 SUPERFAMILY SSF52540 3 301 3.68E-85 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02515 3805bdf924bb4d46f9b467b8af64876b 157 Pfam PF02130 Uncharacterized protein family UPF0054 18 142 9.6E-40 T 14-09-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 PAJ_RS02515 3805bdf924bb4d46f9b467b8af64876b 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 148 24.527 T 14-09-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 PAJ_RS02515 3805bdf924bb4d46f9b467b8af64876b 157 Gene3D G3DSA:3.40.390.30 11 155 7.2E-53 T 14-09-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 PAJ_RS02515 3805bdf924bb4d46f9b467b8af64876b 157 PANTHER PTHR22881 1 154 4.2E-71 T 14-09-2016 PAJ_RS02515 3805bdf924bb4d46f9b467b8af64876b 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 144 4.6E-37 T 14-09-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 PAJ_RS02515 3805bdf924bb4d46f9b467b8af64876b 157 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 114 124 - T 14-09-2016 IPR020549 Endoribonuclease YbeY, conserved site PAJ_RS02515 3805bdf924bb4d46f9b467b8af64876b 157 SUPERFAMILY SSF55486 3 151 1.78E-50 T 14-09-2016 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 SUPERFAMILY SSF81301 526 814 7.52E-87 T 14-09-2016 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 SUPERFAMILY SSF81593 286 435 5.02E-44 T 14-09-2016 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 SUPERFAMILY SSF81593 814 942 5.81E-31 T 14-09-2016 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 Gene3D G3DSA:3.30.460.10 638 810 7.4E-61 T 14-09-2016 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 Gene3D G3DSA:3.30.460.10 111 284 4.5E-64 T 14-09-2016 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 Pfam PF08335 GlnD PII-uridylyltransferase 296 435 3.6E-45 T 14-09-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 Pfam PF08335 GlnD PII-uridylyltransferase 824 916 6.2E-10 T 14-09-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 26 944 19.605 T 14-09-2016 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 552 803 3.4E-99 T 14-09-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 35 273 2.6E-92 T 14-09-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 SUPERFAMILY SSF81301 16 285 3.05E-88 T 14-09-2016 PAJ_RS14585 950ba2572a9266f8903218ca664a579a 950 PANTHER PTHR30621 35 945 0.0 T 14-09-2016 PAJ_RS04505 8588d694c01923029b6c886db0092739 1095 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 1.3E-170 T 14-09-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 PAJ_RS04505 8588d694c01923029b6c886db0092739 1095 PANTHER PTHR30001:SF1 1 856 0.0 T 14-09-2016 PAJ_RS04505 8588d694c01923029b6c886db0092739 1095 SUPERFAMILY SSF50249 40 124 9.38E-21 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS04505 8588d694c01923029b6c886db0092739 1095 Pfam PF10150 Ribonuclease E/G family 121 391 4.3E-93 T 14-09-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 PAJ_RS04505 8588d694c01923029b6c886db0092739 1095 Gene3D G3DSA:2.40.50.140 31 124 5.1E-36 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS04505 8588d694c01923029b6c886db0092739 1095 Pfam PF00575 S1 RNA binding domain 36 118 1.5E-16 T 14-09-2016 IPR003029 S1 domain GO:0003676 PAJ_RS04505 8588d694c01923029b6c886db0092739 1095 SMART SM00316 37 119 2.1E-12 T 14-09-2016 IPR022967 RNA-binding domain, S1 PAJ_RS04505 8588d694c01923029b6c886db0092739 1095 Hamap MF_00970 Ribonuclease E [rne]. 1 1085 38.037 T 14-09-2016 IPR028878 Ribonuclease E GO:0006396|GO:0008995 PAJ_RS04505 8588d694c01923029b6c886db0092739 1095 Pfam PF12111 Polyribonucleotide phosphorylase C terminal 1060 1095 1.6E-17 T 14-09-2016 IPR021968 Polyribonucleotide phosphorylase C-terminal PAJ_RS04505 8588d694c01923029b6c886db0092739 1095 PANTHER PTHR30001 1 856 0.0 T 14-09-2016 PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 Gene3D G3DSA:3.40.50.720 2 224 6.2E-66 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 185 0.0017 T 14-09-2016 PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 SUPERFAMILY SSF51735 1 224 5.64E-63 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 Pfam PF00106 short chain dehydrogenase 3 193 4.4E-54 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.3E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.3E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.3E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 4.2E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.2E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 4.2E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 4.2E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 4.2E-27 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 PANTHER PTHR24322 7 135 2.8E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS06735 bc6c613940d383042a34aa1d902b523b 240 PANTHER PTHR24322 151 180 2.8E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS11695 97cdfa0765429049cb3c1fa68dc3662d 61 Pfam PF11119 Protein of unknown function (DUF2633) 8 47 2.6E-14 T 14-09-2016 IPR022576 Protein of unknown function DUF2633 PAJ_RS08630 3a1a49f60d4d818462bb1bebebdb94b9 262 PANTHER PTHR30473 1 262 9.6E-218 T 14-09-2016 PAJ_RS08630 3a1a49f60d4d818462bb1bebebdb94b9 262 Gene3D G3DSA:3.40.50.300 56 261 1.1E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08630 3a1a49f60d4d818462bb1bebebdb94b9 262 SUPERFAMILY SSF52540 56 239 6.81E-31 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08630 3a1a49f60d4d818462bb1bebebdb94b9 262 PANTHER PTHR30473:SF3 1 262 9.6E-218 T 14-09-2016 PAJ_RS08630 3a1a49f60d4d818462bb1bebebdb94b9 262 Pfam PF02562 PhoH-like protein 57 261 1.0E-76 T 14-09-2016 IPR003714 PhoH-like protein GO:0005524 PAJ_RS08700 d24ec0abc11beaa5f95b26f9d2a1caab 167 TIGRFAM TIGR03823 FliZ: flagellar regulatory protein FliZ 3 166 1.3E-85 T 14-09-2016 IPR022523 Flagellar regulator, FliZ PAJ_RS08700 d24ec0abc11beaa5f95b26f9d2a1caab 167 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 90 166 2.4E-8 T 14-09-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 PAJ_RS07150 4465a4d0fbc3873c7a2258c3029112e2 378 Gene3D G3DSA:3.40.710.10 23 377 1.7E-83 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS07150 4465a4d0fbc3873c7a2258c3029112e2 378 PANTHER PTHR22935:SF64 22 378 3.0E-59 T 14-09-2016 PAJ_RS07150 4465a4d0fbc3873c7a2258c3029112e2 378 ProSitePatterns PS00336 Beta-lactamase class-C active site. 78 85 - T 14-09-2016 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 PAJ_RS07150 4465a4d0fbc3873c7a2258c3029112e2 378 Pfam PF00144 Beta-lactamase 31 377 1.1E-72 T 14-09-2016 IPR001466 Beta-lactamase-related PAJ_RS07150 4465a4d0fbc3873c7a2258c3029112e2 378 PANTHER PTHR22935 22 378 3.0E-59 T 14-09-2016 PAJ_RS07150 4465a4d0fbc3873c7a2258c3029112e2 378 SUPERFAMILY SSF56601 23 377 8.03E-91 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 PANTHER PTHR32303 1 393 5.5E-186 T 14-09-2016 PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 SUPERFAMILY SSF50998 29 384 2.09E-81 T 14-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 PANTHER PTHR32303:SF8 1 393 5.5E-186 T 14-09-2016 PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 Gene3D G3DSA:2.140.10.10 4 392 8.7E-83 T 14-09-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 2 393 40.765 T 14-09-2016 IPR017687 Outer membrane protein assembly factor BamB PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 SMART SM00564 156 187 8.5E-4 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 SMART SM00564 201 232 80.0 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 SMART SM00564 252 283 9.0E-6 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 SMART SM00564 116 147 7.9E-4 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 SMART SM00564 64 96 1.6E-4 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 SMART SM00564 330 362 0.49 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 SMART SM00564 290 321 83.0 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 10 391 3.6E-136 T 14-09-2016 IPR017687 Outer membrane protein assembly factor BamB PAJ_RS11850 6f7a7ddca6d4228d9b12c5001da7fc77 393 Pfam PF13360 PQQ-like domain 79 294 2.2E-48 T 14-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat PAJ_RS17940 f621316fc9eec6082556625ded2277f4 417 Gene3D G3DSA:2.120.10.30 126 148 1.1E-28 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like PAJ_RS17940 f621316fc9eec6082556625ded2277f4 417 Gene3D G3DSA:2.120.10.30 12 62 1.1E-28 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like PAJ_RS17940 f621316fc9eec6082556625ded2277f4 417 Gene3D G3DSA:2.120.10.30 242 408 1.1E-28 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like PAJ_RS17940 f621316fc9eec6082556625ded2277f4 417 Pfam PF07676 WD40-like Beta Propeller Repeat 391 405 0.013 T 14-09-2016 IPR011659 WD40-like Beta Propeller PAJ_RS17940 f621316fc9eec6082556625ded2277f4 417 SUPERFAMILY SSF82171 220 253 4.58E-19 T 14-09-2016 PAJ_RS17940 f621316fc9eec6082556625ded2277f4 417 SUPERFAMILY SSF82171 280 412 4.58E-19 T 14-09-2016 PAJ_RS17940 f621316fc9eec6082556625ded2277f4 417 SUPERFAMILY SSF82171 21 162 4.58E-19 T 14-09-2016 PAJ_RS17940 f621316fc9eec6082556625ded2277f4 417 Pfam PF12566 Protein of unknown function (DUF3748) 65 182 9.8E-57 T 14-09-2016 IPR022223 Protein of unknown function DUF3748 PAJ_RS10725 b2b17fcf9ec3f06b16e7188c4a34b141 299 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 293 1.9E-109 T 14-09-2016 IPR010099 Epimerase family protein SDR39U1 PAJ_RS10725 b2b17fcf9ec3f06b16e7188c4a34b141 299 PANTHER PTHR11092 1 298 4.1E-144 T 14-09-2016 IPR010099 Epimerase family protein SDR39U1 PAJ_RS10725 b2b17fcf9ec3f06b16e7188c4a34b141 299 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 214 4.1E-19 T 14-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PAJ_RS10725 b2b17fcf9ec3f06b16e7188c4a34b141 299 Pfam PF08338 Domain of unknown function (DUF1731) 250 296 2.9E-17 T 14-09-2016 IPR013549 Domain of unknown function DUF1731 PAJ_RS10725 b2b17fcf9ec3f06b16e7188c4a34b141 299 PANTHER PTHR11092:SF0 1 298 4.1E-144 T 14-09-2016 PAJ_RS10725 b2b17fcf9ec3f06b16e7188c4a34b141 299 Gene3D G3DSA:3.40.50.720 1 198 2.5E-22 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10725 b2b17fcf9ec3f06b16e7188c4a34b141 299 Gene3D G3DSA:3.90.25.10 199 249 1.4E-6 T 14-09-2016 PAJ_RS10725 b2b17fcf9ec3f06b16e7188c4a34b141 299 SUPERFAMILY SSF51735 1 297 1.1E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16680 44930adc8bb85096c86f500dba68b4d9 189 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 2 187 9.8E-77 T 14-09-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 PAJ_RS16680 44930adc8bb85096c86f500dba68b4d9 189 PANTHER PTHR30042:SF2 1 189 2.0E-89 T 14-09-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 PAJ_RS16680 44930adc8bb85096c86f500dba68b4d9 189 PIRSF PIRSF001296 1 189 1.1E-75 T 14-09-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 PAJ_RS16680 44930adc8bb85096c86f500dba68b4d9 189 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 1 188 34.856 T 14-09-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 PAJ_RS16680 44930adc8bb85096c86f500dba68b4d9 189 Pfam PF02669 K+-transporting ATPase, c chain 5 186 3.1E-72 T 14-09-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 PAJ_RS16680 44930adc8bb85096c86f500dba68b4d9 189 PANTHER PTHR30042 1 189 2.0E-89 T 14-09-2016 PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 PANTHER PTHR24220:SF284 246 286 2.6E-113 T 14-09-2016 PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 PANTHER PTHR24220:SF284 1 221 2.6E-113 T 14-09-2016 PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 SMART SM00382 23 206 2.5E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 PANTHER PTHR24220 246 286 2.6E-113 T 14-09-2016 PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 PANTHER PTHR24220 1 221 2.6E-113 T 14-09-2016 PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 Pfam PF03459 TOBE domain 290 351 2.6E-15 T 14-09-2016 IPR005116 Transport-associated OB, type 1 PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 SUPERFAMILY SSF52540 7 228 6.15E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 Gene3D G3DSA:2.40.50.100 279 348 3.5E-18 T 14-09-2016 PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 Gene3D G3DSA:3.40.50.300 17 220 1.2E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 Pfam PF00005 ABC transporter 17 156 4.9E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 SUPERFAMILY SSF50331 235 350 9.14E-22 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal PAJ_RS02925 a282a5c9e5dab94e3491c09c6982a86a 352 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 3 350 2.0E-145 T 14-09-2016 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 PAJ_RS12685 64e693dc52e9bb866dcbb323863a01b5 253 Gene3D G3DSA:3.40.1280.10 1 160 3.1E-68 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PAJ_RS12685 64e693dc52e9bb866dcbb323863a01b5 253 PANTHER PTHR32125:SF1 1 228 3.3E-124 T 14-09-2016 PAJ_RS12685 64e693dc52e9bb866dcbb323863a01b5 253 Gene3D G3DSA:1.10.1270.20 161 247 3.0E-37 T 14-09-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 PAJ_RS12685 64e693dc52e9bb866dcbb323863a01b5 253 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 5.9E-72 T 14-09-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 PAJ_RS12685 64e693dc52e9bb866dcbb323863a01b5 253 SUPERFAMILY SSF75217 1 247 3.92E-104 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases PAJ_RS12685 64e693dc52e9bb866dcbb323863a01b5 253 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 234 4.6E-111 T 14-09-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 PAJ_RS12685 64e693dc52e9bb866dcbb323863a01b5 253 PANTHER PTHR32125 1 228 3.3E-124 T 14-09-2016 PAJ_RS12685 64e693dc52e9bb866dcbb323863a01b5 253 PIRSF PIRSF000386 1 251 2.5E-104 T 14-09-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 PAJ_RS12685 64e693dc52e9bb866dcbb323863a01b5 253 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 253 121.115 T 14-09-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 PAJ_RS06715 80fffc4872ffef4ac09ee221974d9ee6 201 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 139 167 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS06715 80fffc4872ffef4ac09ee221974d9ee6 201 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 131 163 5.4E-10 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS06715 80fffc4872ffef4ac09ee221974d9ee6 201 SUPERFAMILY SSF51161 16 191 1.52E-51 T 14-09-2016 IPR011004 Trimeric LpxA-like PAJ_RS06715 80fffc4872ffef4ac09ee221974d9ee6 201 PANTHER PTHR23416 10 189 5.7E-71 T 14-09-2016 PAJ_RS06715 80fffc4872ffef4ac09ee221974d9ee6 201 Gene3D G3DSA:2.160.10.10 9 190 5.1E-60 T 14-09-2016 PAJ_RS06715 80fffc4872ffef4ac09ee221974d9ee6 201 PANTHER PTHR23416:SF58 10 189 5.7E-71 T 14-09-2016 PAJ_RS06715 80fffc4872ffef4ac09ee221974d9ee6 201 Pfam PF12464 Maltose acetyltransferase 10 58 2.4E-12 T 14-09-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 PAJ_RS06715 80fffc4872ffef4ac09ee221974d9ee6 201 SMART SM01266 10 59 3.0E-8 T 14-09-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 PAJ_RS19420 cd5820f6a662db4a6d1fc6c78b1efc30 286 PANTHER PTHR12110:SF20 1 286 1.5E-120 T 14-09-2016 PAJ_RS19420 cd5820f6a662db4a6d1fc6c78b1efc30 286 SUPERFAMILY SSF51658 2 279 1.44E-53 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS19420 cd5820f6a662db4a6d1fc6c78b1efc30 286 PANTHER PTHR12110 1 286 1.5E-120 T 14-09-2016 PAJ_RS19420 cd5820f6a662db4a6d1fc6c78b1efc30 286 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 3 285 5.2E-144 T 14-09-2016 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961|UniPathway: UPA00263 PAJ_RS19420 cd5820f6a662db4a6d1fc6c78b1efc30 286 Pfam PF01261 Xylose isomerase-like TIM barrel 24 235 1.6E-33 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS19420 cd5820f6a662db4a6d1fc6c78b1efc30 286 Gene3D G3DSA:3.20.20.150 6 280 1.7E-51 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS04950 7dfba94d29070b129b809b508892b50f 187 Gene3D G3DSA:3.40.50.150 15 166 8.4E-13 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS04950 7dfba94d29070b129b809b508892b50f 187 Pfam PF13649 Methyltransferase domain 52 143 1.6E-6 T 14-09-2016 PAJ_RS04950 7dfba94d29070b129b809b508892b50f 187 SUPERFAMILY SSF53335 13 178 8.36E-20 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS15450 e742e03af953793208bee6641c6dd7c9 298 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 285 3.6E-92 T 14-09-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 PAJ_RS15450 e742e03af953793208bee6641c6dd7c9 298 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 287 49.067 T 14-09-2016 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 PAJ_RS15450 e742e03af953793208bee6641c6dd7c9 298 PANTHER PTHR10067 12 294 1.6E-115 T 14-09-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 PAJ_RS15450 e742e03af953793208bee6641c6dd7c9 298 Pfam PF02666 Phosphatidylserine decarboxylase 63 284 1.1E-59 T 14-09-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 PAJ_RS08550 7587ac442f2febc89463eaaf8d961ea1 262 PANTHER PTHR10788 12 252 8.8E-94 T 14-09-2016 PAJ_RS08550 7587ac442f2febc89463eaaf8d961ea1 262 SUPERFAMILY SSF56784 20 248 2.42E-42 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS08550 7587ac442f2febc89463eaaf8d961ea1 262 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 19 245 9.0E-59 T 14-09-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 PAJ_RS08550 7587ac442f2febc89463eaaf8d961ea1 262 PANTHER PTHR10788:SF42 12 252 8.8E-94 T 14-09-2016 PAJ_RS08550 7587ac442f2febc89463eaaf8d961ea1 262 Gene3D G3DSA:3.40.50.1000 169 249 9.0E-44 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS08550 7587ac442f2febc89463eaaf8d961ea1 262 Gene3D G3DSA:3.40.50.1000 20 94 9.0E-44 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS08550 7587ac442f2febc89463eaaf8d961ea1 262 Pfam PF02358 Trehalose-phosphatase 22 236 1.3E-49 T 14-09-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 PAJ_RS08550 7587ac442f2febc89463eaaf8d961ea1 262 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 21 213 1.3E-18 T 14-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 PAJ_RS01980 522429e889bf77845ad2df520adef711 228 Gene3D G3DSA:3.40.50.300 5 227 9.5E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01980 522429e889bf77845ad2df520adef711 228 PANTHER PTHR24220 8 228 1.1E-113 T 14-09-2016 PAJ_RS01980 522429e889bf77845ad2df520adef711 228 SUPERFAMILY SSF52540 6 227 3.24E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01980 522429e889bf77845ad2df520adef711 228 SMART SM00382 35 223 1.4E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01980 522429e889bf77845ad2df520adef711 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS01980 522429e889bf77845ad2df520adef711 228 Pfam PF00005 ABC transporter 27 174 1.2E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS01980 522429e889bf77845ad2df520adef711 228 PANTHER PTHR24220:SF509 8 228 1.1E-113 T 14-09-2016 PAJ_RS12350 ca05559013509658e49a074fe96547ee 464 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 20 459 3.4E-107 T 14-09-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS12350 ca05559013509658e49a074fe96547ee 464 Pfam PF00939 Sodium:sulfate symporter transmembrane region 4 463 6.7E-117 T 14-09-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS12350 ca05559013509658e49a074fe96547ee 464 PIRSF PIRSF002457 1 464 3.0E-109 T 14-09-2016 IPR030676 Citrate carrier CitT-related PAJ_RS12350 ca05559013509658e49a074fe96547ee 464 PANTHER PTHR10283:SF89 1 464 1.7E-121 T 14-09-2016 PAJ_RS12350 ca05559013509658e49a074fe96547ee 464 PANTHER PTHR10283 1 464 1.7E-121 T 14-09-2016 PAJ_RS19825 2017f37b541514a50a5ad5a4cbf0c70d 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.0E-38 T 14-09-2016 IPR028909 Ribosomal protein L21-like GO:0005840 PAJ_RS19825 2017f37b541514a50a5ad5a4cbf0c70d 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 1.4E-44 T 14-09-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19825 2017f37b541514a50a5ad5a4cbf0c70d 103 SUPERFAMILY SSF141091 1 102 1.44E-37 T 14-09-2016 IPR028909 Ribosomal protein L21-like GO:0005840 PAJ_RS19825 2017f37b541514a50a5ad5a4cbf0c70d 103 PANTHER PTHR21349 1 101 5.1E-48 T 14-09-2016 PAJ_RS19825 2017f37b541514a50a5ad5a4cbf0c70d 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.751 T 14-09-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS19825 2017f37b541514a50a5ad5a4cbf0c70d 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 14-09-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 PANTHER PTHR23135 9 491 5.6E-220 T 14-09-2016 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 22 491 2.1E-167 T 14-09-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 424 8.3E-26 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 Pfam PF08245 Mur ligase middle domain 114 318 7.7E-52 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 4 491 35.034 T 14-09-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 PANTHER PTHR23135:SF4 9 491 5.6E-220 T 14-09-2016 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 Gene3D G3DSA:3.40.1390.10 4 104 6.7E-34 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 SUPERFAMILY SSF63418 5 103 1.1E-23 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 Gene3D G3DSA:3.90.190.20 343 484 4.6E-59 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 Gene3D G3DSA:3.40.1190.10 107 342 6.3E-81 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 SUPERFAMILY SSF53244 339 491 5.95E-52 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 SUPERFAMILY SSF53623 105 338 2.88E-79 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS00300 518c6916dde05884d6fce02b6c6b939a 495 Pfam PF01225 Mur ligase family, catalytic domain 25 102 7.6E-14 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 193 209 - T 14-09-2016 IPR004035 Endonuclease III, iron-sulphur binding site PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 SMART SM00525 192 212 6.2E-5 T 14-09-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 Gene3D G3DSA:1.10.340.30 23 123 4.6E-45 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 SUPERFAMILY SSF48150 4 226 5.18E-79 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 193 209 3.4E-4 T 14-09-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 SUPERFAMILY SSF55811 221 344 1.2E-22 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 SMART SM00478 40 191 3.7E-53 T 14-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 Gene3D G3DSA:3.90.79.10 231 347 1.5E-19 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 Pfam PF00633 Helix-hairpin-helix motif 101 128 8.8E-7 T 14-09-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 ProSitePatterns PS01155 Endonuclease III family signature. 103 132 - T 14-09-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 6 276 6.4E-125 T 14-09-2016 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 Gene3D G3DSA:1.10.1670.10 124 225 6.9E-40 T 14-09-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 Pfam PF14815 NUDIX domain 235 342 8.1E-21 T 14-09-2016 IPR029119 MutY, C-terminal PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 PANTHER PTHR10359 6 351 4.5E-108 T 14-09-2016 PAJ_RS13550 1e9877da0cdefee1dcfc0f0b851559b6 361 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 37 168 2.0E-21 T 14-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PAJ_RS13840 70b29c87323d1a8eefb2cf045805e42e 295 Pfam PF11920 Protein of unknown function (DUF3438) 7 285 6.1E-109 T 14-09-2016 IPR021844 Integrating conjugative element protein, PFL4704 PAJ_RS13840 70b29c87323d1a8eefb2cf045805e42e 295 TIGRFAM TIGR03749 conj_TIGR03749: integrating conjugative element protein, PFL_4704 family 10 276 1.5E-99 T 14-09-2016 IPR021844 Integrating conjugative element protein, PFL4704 PAJ_RS08220 956d33dbaffdcd03f8d871e9c12fc23f 116 PANTHER PTHR30561 1 111 1.6E-54 T 14-09-2016 PAJ_RS08220 956d33dbaffdcd03f8d871e9c12fc23f 116 SUPERFAMILY SSF103481 7 106 1.57E-16 T 14-09-2016 PAJ_RS08220 956d33dbaffdcd03f8d871e9c12fc23f 116 Pfam PF00893 Small Multidrug Resistance protein 3 93 1.5E-25 T 14-09-2016 IPR000390 Small multidrug resistance protein family GO:0016021 PAJ_RS08220 956d33dbaffdcd03f8d871e9c12fc23f 116 PANTHER PTHR30561:SF2 1 111 1.6E-54 T 14-09-2016 IPR023740 Spermidine export protein MdtJ GO:0005886|GO:0015606|GO:0015848 PAJ_RS08755 888002866455e97e7e5cd5cd0a5f06f1 275 Gene3D G3DSA:3.40.50.970 2 271 2.1E-81 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS08755 888002866455e97e7e5cd5cd0a5f06f1 275 PANTHER PTHR11624 4 273 5.9E-76 T 14-09-2016 IPR033247 Transketolase family PAJ_RS08755 888002866455e97e7e5cd5cd0a5f06f1 275 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 13 267 2.8E-37 T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PAJ_RS08755 888002866455e97e7e5cd5cd0a5f06f1 275 PANTHER PTHR11624:SF86 4 273 5.9E-76 T 14-09-2016 PAJ_RS08755 888002866455e97e7e5cd5cd0a5f06f1 275 SUPERFAMILY SSF52518 5 269 4.55E-68 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 PRINTS PR00990 Ribokinase signature 173 188 6.0E-31 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 PRINTS PR00990 Ribokinase signature 5 26 6.0E-31 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 PRINTS PR00990 Ribokinase signature 217 228 6.0E-31 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 PRINTS PR00990 Ribokinase signature 32 51 6.0E-31 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 PRINTS PR00990 Ribokinase signature 104 117 6.0E-31 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 PANTHER PTHR10584:SF184 1 302 7.9E-108 T 14-09-2016 PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 Gene3D G3DSA:3.40.1190.20 1 303 1.4E-94 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 SUPERFAMILY SSF53613 1 302 5.14E-82 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 Pfam PF00294 pfkB family carbohydrate kinase 2 293 3.7E-65 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 PANTHER PTHR10584 1 302 7.9E-108 T 14-09-2016 PAJ_RS20815 cf8f289af1104a396dd1324da795c308 305 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 3 299 8.6E-110 T 14-09-2016 IPR011877 Ribokinase, bacterial type GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|UniPathway: UPA00916 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 Gene3D G3DSA:3.40.630.20 2 212 1.4E-72 T 14-09-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 1.5E-45 T 14-09-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 1.5E-45 T 14-09-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 162 174 1.5E-45 T 14-09-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 1.5E-45 T 14-09-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 1.5E-45 T 14-09-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 SUPERFAMILY SSF53182 1 215 8.24E-76 T 14-09-2016 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 201 41.668 T 14-09-2016 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 4 213 1.7E-87 T 14-09-2016 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 14-09-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 Pfam PF01470 Pyroglutamyl peptidase 3 202 1.5E-84 T 14-09-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 PANTHER PTHR23402 1 214 8.7E-70 T 14-09-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 PANTHER PTHR23402:SF1 1 214 8.7E-70 T 14-09-2016 PAJ_RS02690 ab40dc10bcd79c44de109917bdd21d4c 215 PIRSF PIRSF015592 1 213 4.9E-89 T 14-09-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 PAJ_RS00805 4b4dbb870e8882be44b354dcdbc826bc 136 SUPERFAMILY SSF75620 7 109 4.32E-14 T 14-09-2016 PAJ_RS00805 4b4dbb870e8882be44b354dcdbc826bc 136 Gene3D G3DSA:3.30.160.200 4 106 5.6E-32 T 14-09-2016 PAJ_RS00805 4b4dbb870e8882be44b354dcdbc826bc 136 PANTHER PTHR11075 7 136 2.9E-39 T 14-09-2016 PAJ_RS00805 4b4dbb870e8882be44b354dcdbc826bc 136 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 14-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 PAJ_RS00805 4b4dbb870e8882be44b354dcdbc826bc 136 Pfam PF00472 RF-1 domain 6 132 8.5E-26 T 14-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 SMART SM00859 3 146 2.3E-51 T 14-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 PANTHER PTHR32338 1 334 3.6E-161 T 14-09-2016 PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 38.672 T 14-09-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 163 311 5.9E-15 T 14-09-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 SUPERFAMILY SSF51735 2 180 5.28E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 SUPERFAMILY SSF55347 154 308 1.37E-49 T 14-09-2016 PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 Gene3D G3DSA:3.40.50.720 1 162 9.4E-62 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 Gene3D G3DSA:3.30.360.10 163 308 3.8E-48 T 14-09-2016 PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 146 1.9E-34 T 14-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 14-09-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS17000 d0411d3488c9da194a7154ec13c532e1 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 3.0E-124 T 14-09-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS04880 68e516fa8e38c34d3eafd53cb96f0473 315 PANTHER PTHR34294 6 313 4.0E-74 T 14-09-2016 PAJ_RS04880 68e516fa8e38c34d3eafd53cb96f0473 315 SUPERFAMILY SSF46689 9 69 2.78E-5 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS04880 68e516fa8e38c34d3eafd53cb96f0473 315 SUPERFAMILY SSF100950 63 313 5.76E-66 T 14-09-2016 PAJ_RS04880 68e516fa8e38c34d3eafd53cb96f0473 315 Pfam PF04198 Putative sugar-binding domain 64 313 4.2E-60 T 14-09-2016 IPR007324 Sugar-binding domain, putative GO:0030246 PAJ_RS04880 68e516fa8e38c34d3eafd53cb96f0473 315 Gene3D G3DSA:1.10.10.10 21 68 2.4E-4 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04880 68e516fa8e38c34d3eafd53cb96f0473 315 Gene3D G3DSA:3.40.50.1360 69 313 4.6E-75 T 14-09-2016 PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 Pfam PF00698 Acyl transferase domain 6 287 3.5E-43 T 14-09-2016 IPR014043 Acyl transferase PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 309 7.7E-45 T 14-09-2016 IPR020801 Polyketide synthase, acyl transferase domain PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 290 3.8E-133 T 14-09-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 SUPERFAMILY SSF55048 128 197 1.31E-17 T 14-09-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 Gene3D G3DSA:3.40.366.10 197 302 5.2E-75 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 Gene3D G3DSA:3.40.366.10 3 122 5.2E-75 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 SUPERFAMILY SSF52151 190 307 4.45E-84 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 SUPERFAMILY SSF52151 4 122 4.45E-84 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 PIRSF PIRSF000446 1 309 1.6E-143 T 14-09-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 Gene3D G3DSA:3.30.70.250 125 196 1.9E-30 T 14-09-2016 PAJ_RS04540 40e0e83f98c9c668d78b904873c79ca6 310 PANTHER PTHR10982 1 303 1.1E-164 T 14-09-2016 PAJ_RS09735 33df9832cdb37e27eadcc2079766970c 208 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 185 2.4E-43 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS09735 33df9832cdb37e27eadcc2079766970c 208 SUPERFAMILY SSF53639 1 207 1.86E-59 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS09735 33df9832cdb37e27eadcc2079766970c 208 Gene3D G3DSA:3.40.225.10 1 208 9.1E-67 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS09735 33df9832cdb37e27eadcc2079766970c 208 PANTHER PTHR22789 1 208 2.1E-119 T 14-09-2016 PAJ_RS09735 33df9832cdb37e27eadcc2079766970c 208 SMART SM01007 8 187 1.7E-58 T 14-09-2016 IPR001303 Class II aldolase/adducin N-terminal PAJ_RS09735 33df9832cdb37e27eadcc2079766970c 208 PANTHER PTHR22789:SF6 1 208 2.1E-119 T 14-09-2016 PAJ_RS14200 f77b72a6215cfa046735e48292cbcce6 199 Pfam PF00805 Pentapeptide repeats (8 copies) 124 162 5.1E-10 T 14-09-2016 IPR001646 Pentapeptide repeat PAJ_RS14200 f77b72a6215cfa046735e48292cbcce6 199 Pfam PF13599 Pentapeptide repeats (9 copies) 30 110 4.1E-10 T 14-09-2016 IPR001646 Pentapeptide repeat PAJ_RS14200 f77b72a6215cfa046735e48292cbcce6 199 PANTHER PTHR14136:SF13 8 185 8.5E-28 T 14-09-2016 PAJ_RS14200 f77b72a6215cfa046735e48292cbcce6 199 PANTHER PTHR14136 8 185 8.5E-28 T 14-09-2016 PAJ_RS14200 f77b72a6215cfa046735e48292cbcce6 199 SUPERFAMILY SSF141571 14 197 5.3E-40 T 14-09-2016 PAJ_RS03665 976bd0beda9a71b176183fb9d4594057 60 Pfam PF03966 Trm112p-like protein 2 41 2.5E-9 T 14-09-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 PAJ_RS03665 976bd0beda9a71b176183fb9d4594057 60 Gene3D G3DSA:2.20.25.10 8 57 3.8E-24 T 14-09-2016 PAJ_RS03665 976bd0beda9a71b176183fb9d4594057 60 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 27.057 T 14-09-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 PAJ_RS03665 976bd0beda9a71b176183fb9d4594057 60 SUPERFAMILY SSF158997 1 54 5.89E-20 T 14-09-2016 PAJ_RS03665 976bd0beda9a71b176183fb9d4594057 60 PANTHER PTHR33505 1 57 1.8E-24 T 14-09-2016 PAJ_RS15020 c90de731d9b2b2b22a0a888860a9e76d 132 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 20 128 3.2E-23 T 14-09-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III PAJ_RS15020 c90de731d9b2b2b22a0a888860a9e76d 132 Gene3D G3DSA:1.20.1250.20 53 111 5.9E-5 T 14-09-2016 PAJ_RS12295 7d708f6c4752c847fc4d820a5aa9eeca 446 Gene3D G3DSA:1.20.1250.20 245 434 2.8E-18 T 14-09-2016 PAJ_RS12295 7d708f6c4752c847fc4d820a5aa9eeca 446 Gene3D G3DSA:1.20.1250.20 24 221 1.4E-42 T 14-09-2016 PAJ_RS12295 7d708f6c4752c847fc4d820a5aa9eeca 446 PANTHER PTHR11662:SF3 12 436 8.9E-141 T 14-09-2016 PAJ_RS12295 7d708f6c4752c847fc4d820a5aa9eeca 446 PANTHER PTHR11662 12 436 8.9E-141 T 14-09-2016 PAJ_RS12295 7d708f6c4752c847fc4d820a5aa9eeca 446 Pfam PF07690 Major Facilitator Superfamily 30 390 6.7E-43 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS12295 7d708f6c4752c847fc4d820a5aa9eeca 446 SUPERFAMILY SSF103473 1 432 4.84E-79 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS18895 cae9ea0cb1df8e94d32ce6f7d1d83fd0 170 Gene3D G3DSA:3.40.1410.10 12 166 2.5E-58 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PAJ_RS18895 cae9ea0cb1df8e94d32ce6f7d1d83fd0 170 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 12 166 27.665 T 14-09-2016 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|UniPathway: UPA00232 PAJ_RS18895 cae9ea0cb1df8e94d32ce6f7d1d83fd0 170 PANTHER PTHR38683 1 169 2.4E-62 T 14-09-2016 PAJ_RS18895 cae9ea0cb1df8e94d32ce6f7d1d83fd0 170 Pfam PF04345 Chorismate lyase 12 167 4.3E-39 T 14-09-2016 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|UniPathway: UPA00232 PAJ_RS18895 cae9ea0cb1df8e94d32ce6f7d1d83fd0 170 SUPERFAMILY SSF64288 11 166 5.49E-48 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PAJ_RS14790 a0af827bff9a416564ccfc1d5d38ef4c 72 Pfam PF10809 Protein of unknown function (DUF2732) 1 70 5.3E-18 T 14-09-2016 IPR020126 Protein of unknown function DUF2732 PAJ_RS08525 75cca6bf6e173f2cb3fa81218418657f 424 Pfam PF00691 OmpA family 160 257 4.1E-13 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS08525 75cca6bf6e173f2cb3fa81218418657f 424 SUPERFAMILY SSF103088 156 264 6.67E-19 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS08525 75cca6bf6e173f2cb3fa81218418657f 424 PANTHER PTHR30329:SF2 2 288 8.0E-129 T 14-09-2016 PAJ_RS08525 75cca6bf6e173f2cb3fa81218418657f 424 Gene3D G3DSA:3.30.1330.60 151 264 5.7E-17 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS08525 75cca6bf6e173f2cb3fa81218418657f 424 PANTHER PTHR30329 2 288 8.0E-129 T 14-09-2016 PAJ_RS08525 75cca6bf6e173f2cb3fa81218418657f 424 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 12 66 1.6E-20 T 14-09-2016 IPR025713 Motility protein B, N-terminal domain PAJ_RS06100 86040a0cff7f4d26eaeb9f83477d7ccd 92 Gene3D G3DSA:1.10.10.10 10 70 2.6E-6 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06100 86040a0cff7f4d26eaeb9f83477d7ccd 92 SUPERFAMILY SSF46894 10 70 2.52E-9 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS13030 b4f9b4228b93f71e93f90f12db1cd67a 447 Gene3D G3DSA:1.20.1250.20 245 441 1.5E-34 T 14-09-2016 PAJ_RS13030 b4f9b4228b93f71e93f90f12db1cd67a 447 SUPERFAMILY SSF103473 10 444 2.62E-82 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS13030 b4f9b4228b93f71e93f90f12db1cd67a 447 PANTHER PTHR11662:SF18 6 447 7.9E-230 T 14-09-2016 PAJ_RS13030 b4f9b4228b93f71e93f90f12db1cd67a 447 PANTHER PTHR11662 6 447 7.9E-230 T 14-09-2016 PAJ_RS13030 b4f9b4228b93f71e93f90f12db1cd67a 447 Pfam PF07690 Major Facilitator Superfamily 25 317 2.5E-48 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS13030 b4f9b4228b93f71e93f90f12db1cd67a 447 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 27 436 6.4E-153 T 14-09-2016 IPR004744 D-galactonate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS13030 b4f9b4228b93f71e93f90f12db1cd67a 447 PIRSF PIRSF002808 1 447 3.2E-44 T 14-09-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS13030 b4f9b4228b93f71e93f90f12db1cd67a 447 Gene3D G3DSA:1.20.1250.20 13 204 3.2E-43 T 14-09-2016 PAJ_RS10945 5d8d57b94962925ea7e08897f650dbc6 403 SUPERFAMILY SSF48452 160 268 2.11E-19 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS10945 5d8d57b94962925ea7e08897f650dbc6 403 SMART SM00028 235 268 11.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS10945 5d8d57b94962925ea7e08897f650dbc6 403 SMART SM00028 164 197 20.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS10945 5d8d57b94962925ea7e08897f650dbc6 403 Gene3D G3DSA:1.25.40.10 205 284 6.2E-27 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS10945 5d8d57b94962925ea7e08897f650dbc6 403 PANTHER PTHR30009:SF10 89 309 6.9E-60 T 14-09-2016 PAJ_RS10945 5d8d57b94962925ea7e08897f650dbc6 403 Gene3D G3DSA:1.25.40.10 157 204 6.6E-6 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS10945 5d8d57b94962925ea7e08897f650dbc6 403 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 4 112 8.9E-23 T 14-09-2016 IPR017560 Cytochrome c-type biogenesis protein CcmI PAJ_RS10945 5d8d57b94962925ea7e08897f650dbc6 403 PANTHER PTHR30009 89 309 6.9E-60 T 14-09-2016 PAJ_RS10945 5d8d57b94962925ea7e08897f650dbc6 403 Pfam PF14559 Tetratricopeptide repeat 178 242 1.6E-6 T 14-09-2016 PAJ_RS00535 8d609eb5cc13a229ffb9a3978a1c9b4d 230 SMART SM00947 39 201 6.6E-69 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS00535 8d609eb5cc13a229ffb9a3978a1c9b4d 230 SUPERFAMILY SSF53056 7 221 5.1E-76 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS00535 8d609eb5cc13a229ffb9a3978a1c9b4d 230 Pfam PF00484 Carbonic anhydrase 47 195 3.0E-50 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS00535 8d609eb5cc13a229ffb9a3978a1c9b4d 230 PANTHER PTHR11002 1 216 4.5E-150 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS00535 8d609eb5cc13a229ffb9a3978a1c9b4d 230 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 51 58 - T 14-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS00535 8d609eb5cc13a229ffb9a3978a1c9b4d 230 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 91 111 - T 14-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS00535 8d609eb5cc13a229ffb9a3978a1c9b4d 230 PANTHER PTHR11002:SF23 1 216 4.5E-150 T 14-09-2016 PAJ_RS00535 8d609eb5cc13a229ffb9a3978a1c9b4d 230 Gene3D G3DSA:3.40.1050.10 9 219 3.7E-79 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PAJ_RS16900 b58a3abb0951e236c46df4c8cce2ea9f 112 Pfam PF04219 Protein of unknown function, DUF 10 98 7.6E-38 T 14-09-2016 IPR007335 Protein of unknown function DUF413 PAJ_RS04660 65696ddc65c6cb1941dc04cb4e1e9251 414 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 4 414 6.0E-215 T 14-09-2016 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0006810|GO:0009276|GO:0016021 PAJ_RS04660 65696ddc65c6cb1941dc04cb4e1e9251 414 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 413 3.8E-158 T 14-09-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 PAJ_RS04660 65696ddc65c6cb1941dc04cb4e1e9251 414 Pfam PF12704 MacB-like periplasmic core domain 27 240 1.3E-13 T 14-09-2016 IPR025857 MacB-like periplasmic core domain PAJ_RS04660 65696ddc65c6cb1941dc04cb4e1e9251 414 PANTHER PTHR30489 1 414 4.8E-83 T 14-09-2016 PAJ_RS04660 65696ddc65c6cb1941dc04cb4e1e9251 414 Pfam PF02687 FtsX-like permease family 274 407 1.3E-20 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PAJ_RS04660 65696ddc65c6cb1941dc04cb4e1e9251 414 PANTHER PTHR30489:SF0 1 414 4.8E-83 T 14-09-2016 PAJ_RS15255 e4bfc14949a5c26cc076739f95f35e7b 118 SUPERFAMILY SSF110857 1 114 2.75E-32 T 14-09-2016 IPR013024 Butirosin biosynthesis, BtrG-like PAJ_RS15255 e4bfc14949a5c26cc076739f95f35e7b 118 Gene3D G3DSA:3.10.490.10 1 116 1.1E-39 T 14-09-2016 IPR013024 Butirosin biosynthesis, BtrG-like PAJ_RS15255 e4bfc14949a5c26cc076739f95f35e7b 118 PANTHER PTHR12510 1 114 6.3E-62 T 14-09-2016 PAJ_RS15255 e4bfc14949a5c26cc076739f95f35e7b 118 PANTHER PTHR12510:SF6 1 114 6.3E-62 T 14-09-2016 PAJ_RS15255 e4bfc14949a5c26cc076739f95f35e7b 118 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 109 1.4E-21 T 14-09-2016 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 PANTHER PTHR30185 1 275 3.4E-124 T 14-09-2016 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 SMART SM01061 1 59 9.3E-28 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 Pfam PF00874 PRD domain 78 161 1.7E-20 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 Pfam PF00874 PRD domain 179 271 1.4E-19 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 Gene3D G3DSA:2.30.24.10 1 54 3.7E-24 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 SUPERFAMILY SSF50151 1 54 2.88E-17 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 Gene3D G3DSA:1.10.1790.10 65 163 1.5E-27 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 Gene3D G3DSA:1.10.1790.10 169 275 3.0E-32 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 SUPERFAMILY SSF63520 170 273 6.02E-27 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 PANTHER PTHR30185:SF2 1 275 3.4E-124 T 14-09-2016 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 Pfam PF03123 CAT RNA binding domain 1 54 1.6E-22 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 ProSitePatterns PS00654 PRD domain signature. 97 109 - T 14-09-2016 IPR001550 Transcription antiterminator, conserved site GO:0003723|GO:0045893 PAJ_RS12305 a07d12236972bd97a1679e95c7314511 277 SUPERFAMILY SSF63520 59 166 3.4E-27 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS05750 330ce66f46d20587c4ddfa257b133613 100 Pfam PF11080 Protein of unknown function (DUF2622) 1 94 1.9E-33 T 14-09-2016 IPR022597 Endoribonuclease GhoS GO:0004521 PAJ_RS05750 330ce66f46d20587c4ddfa257b133613 100 ProDom PD066031 YDIZ CYTOPLASMIC STY1786 1 91 2.0E-14 T 14-09-2016 IPR020499 Uncharacterised protein family YdiZ PAJ_RS13655 470bcb74010e3dfe99de2e8da861dc34 165 Pfam PF05974 Domain of unknown function (DUF892) 5 157 4.9E-52 T 14-09-2016 IPR010287 Domain of unknown function DUF892 PAJ_RS13655 470bcb74010e3dfe99de2e8da861dc34 165 SUPERFAMILY SSF47240 4 157 3.39E-49 T 14-09-2016 IPR009078 Ferritin-like superfamily PAJ_RS13655 470bcb74010e3dfe99de2e8da861dc34 165 PANTHER PTHR30565 1 157 7.1E-61 T 14-09-2016 PAJ_RS13655 470bcb74010e3dfe99de2e8da861dc34 165 Gene3D G3DSA:1.20.1260.10 1 158 1.7E-61 T 14-09-2016 IPR012347 Ferritin-related PAJ_RS20055 0d6283b079d62fc5121dc8c78ab7fdcd 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 126 6.2E-53 T 14-09-2016 IPR006056 RidA family PAJ_RS20055 0d6283b079d62fc5121dc8c78ab7fdcd 128 SUPERFAMILY SSF55298 5 126 1.73E-42 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PAJ_RS20055 0d6283b079d62fc5121dc8c78ab7fdcd 128 PANTHER PTHR11803 5 127 1.9E-52 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family PAJ_RS20055 0d6283b079d62fc5121dc8c78ab7fdcd 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 103 121 - T 14-09-2016 IPR019897 RidA, conserved site PAJ_RS20055 0d6283b079d62fc5121dc8c78ab7fdcd 128 Pfam PF01042 Endoribonuclease L-PSP 8 126 1.0E-43 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family PAJ_RS20055 0d6283b079d62fc5121dc8c78ab7fdcd 128 Gene3D G3DSA:3.30.1330.40 3 126 1.4E-46 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PAJ_RS09690 d1a487a5fd6feb71328044008178f9bd 340 SUPERFAMILY SSF51679 7 333 1.44E-52 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS09690 d1a487a5fd6feb71328044008178f9bd 340 PANTHER PTHR30137 1 340 3.5E-226 T 14-09-2016 PAJ_RS09690 d1a487a5fd6feb71328044008178f9bd 340 Pfam PF00296 Luciferase-like monooxygenase 8 250 4.6E-23 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS09690 d1a487a5fd6feb71328044008178f9bd 340 PANTHER PTHR30137:SF3 1 340 3.5E-226 T 14-09-2016 PAJ_RS09690 d1a487a5fd6feb71328044008178f9bd 340 Gene3D G3DSA:3.20.20.30 2 340 1.2E-58 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS14230 68a458eecda31ce4c470c38284a831e0 580 Gene3D G3DSA:1.10.3720.10 25 293 5.4E-43 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS14230 68a458eecda31ce4c470c38284a831e0 580 Gene3D G3DSA:1.10.3720.10 318 565 9.6E-34 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS14230 68a458eecda31ce4c470c38284a831e0 580 PANTHER PTHR30183 11 574 3.4E-43 T 14-09-2016 PAJ_RS14230 68a458eecda31ce4c470c38284a831e0 580 SUPERFAMILY SSF161098 317 569 2.07E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS14230 68a458eecda31ce4c470c38284a831e0 580 SUPERFAMILY SSF161098 21 292 1.53E-43 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS14230 68a458eecda31ce4c470c38284a831e0 580 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 291 1.1E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS14230 68a458eecda31ce4c470c38284a831e0 580 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 387 569 2.8E-12 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS04535 5b597a5d5dde9b660c9ef1ac245ab1d3 317 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 2 317 1.3E-145 T 14-09-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 PAJ_RS04535 5b597a5d5dde9b660c9ef1ac245ab1d3 317 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 228 316 1.4E-37 T 14-09-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 PAJ_RS04535 5b597a5d5dde9b660c9ef1ac245ab1d3 317 PANTHER PTHR18919 26 317 2.9E-131 T 14-09-2016 PAJ_RS04535 5b597a5d5dde9b660c9ef1ac245ab1d3 317 PANTHER PTHR18919:SF109 26 317 2.9E-131 T 14-09-2016 PAJ_RS04535 5b597a5d5dde9b660c9ef1ac245ab1d3 317 SUPERFAMILY SSF53901 3 317 8.73E-72 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS04535 5b597a5d5dde9b660c9ef1ac245ab1d3 317 Gene3D G3DSA:3.40.47.10 161 316 4.1E-54 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS04535 5b597a5d5dde9b660c9ef1ac245ab1d3 317 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 317 70.72 T 14-09-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 PAJ_RS04535 5b597a5d5dde9b660c9ef1ac245ab1d3 317 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 1.4E-30 T 14-09-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 PAJ_RS04535 5b597a5d5dde9b660c9ef1ac245ab1d3 317 Gene3D G3DSA:3.40.47.10 4 160 9.2E-63 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS15980 777166ca2c6f5574e10d2b02c33fe62d 200 Pfam PF01810 LysE type translocator 16 190 2.2E-17 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS15980 777166ca2c6f5574e10d2b02c33fe62d 200 PANTHER PTHR30086:SF12 1 190 2.1E-84 T 14-09-2016 PAJ_RS15980 777166ca2c6f5574e10d2b02c33fe62d 200 PANTHER PTHR30086 1 190 2.1E-84 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS17705 23fee63d3fa7d8dc5fe4f45d81b1ee41 412 SUPERFAMILY SSF103473 12 404 1.57E-79 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS17705 23fee63d3fa7d8dc5fe4f45d81b1ee41 412 ProSitePatterns PS00217 Sugar transport proteins signature 2. 112 137 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS17705 23fee63d3fa7d8dc5fe4f45d81b1ee41 412 Pfam PF07690 Major Facilitator Superfamily 23 304 3.2E-40 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS17705 23fee63d3fa7d8dc5fe4f45d81b1ee41 412 PANTHER PTHR23508 15 399 1.5E-125 T 14-09-2016 PAJ_RS17705 23fee63d3fa7d8dc5fe4f45d81b1ee41 412 Gene3D G3DSA:1.20.1250.20 16 193 1.6E-32 T 14-09-2016 PAJ_RS17705 23fee63d3fa7d8dc5fe4f45d81b1ee41 412 Gene3D G3DSA:1.20.1250.20 225 402 8.2E-27 T 14-09-2016 PAJ_RS17705 23fee63d3fa7d8dc5fe4f45d81b1ee41 412 PANTHER PTHR23508:SF18 15 399 1.5E-125 T 14-09-2016 PAJ_RS07200 af00a351d0846cbcbb1677d709812ca5 108 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 2 106 22.911 T 14-09-2016 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 PAJ_RS07200 af00a351d0846cbcbb1677d709812ca5 108 PANTHER PTHR36116 1 102 6.9E-44 T 14-09-2016 PAJ_RS07200 af00a351d0846cbcbb1677d709812ca5 108 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 1 105 9.9E-43 T 14-09-2016 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 PAJ_RS07200 af00a351d0846cbcbb1677d709812ca5 108 SUPERFAMILY SSF103481 7 105 2.09E-5 T 14-09-2016 PAJ_RS07200 af00a351d0846cbcbb1677d709812ca5 108 PANTHER PTHR36116:SF1 1 102 6.9E-44 T 14-09-2016 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 PRINTS PR00738 Glycosyl hydrolase family 20 signature 548 564 8.3E-45 T 14-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 PRINTS PR00738 Glycosyl hydrolase family 20 signature 232 249 8.3E-45 T 14-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 PRINTS PR00738 Glycosyl hydrolase family 20 signature 180 201 8.3E-45 T 14-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 PRINTS PR00738 Glycosyl hydrolase family 20 signature 565 582 8.3E-45 T 14-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 PRINTS PR00738 Glycosyl hydrolase family 20 signature 151 168 8.3E-45 T 14-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 PRINTS PR00738 Glycosyl hydrolase family 20 signature 116 136 8.3E-45 T 14-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 Gene3D G3DSA:3.30.379.10 7 154 3.8E-23 T 14-09-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 SUPERFAMILY SSF55545 25 156 2.22E-25 T 14-09-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 PANTHER PTHR22600 535 599 2.8E-139 T 14-09-2016 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 PANTHER PTHR22600 490 510 2.8E-139 T 14-09-2016 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 PANTHER PTHR22600 1 414 2.8E-139 T 14-09-2016 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 SUPERFAMILY SSF51445 157 420 1.04E-99 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 SUPERFAMILY SSF51445 535 600 1.04E-99 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 Gene3D G3DSA:3.20.20.80 155 414 1.2E-136 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 Gene3D G3DSA:3.20.20.80 491 612 1.2E-136 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 24 154 3.6E-14 T 14-09-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 PAJ_RS19995 628d2b77264661aa8b40438935027f44 791 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 157 583 1.1E-96 T 14-09-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 PAJ_RS08675 70d0eaa266a6243496d71b88625ac25e 361 Pfam PF01757 Acyltransferase family 9 318 1.2E-15 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 PAJ_RS20825 e63fd0ebd1c19b17d0527abd889b5d11 337 Pfam PF14486 Domain of unknown function (DUF4432) 35 334 1.8E-18 T 14-09-2016 IPR027839 Protein of unknown function DUF4432 PAJ_RS20825 e63fd0ebd1c19b17d0527abd889b5d11 337 SUPERFAMILY SSF74650 37 331 3.3E-8 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS04530 38212690e9e449a24c25924b6672abca 346 Pfam PF02504 Fatty acid synthesis protein 5 331 3.3E-117 T 14-09-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 UniPathway: UPA00085 PAJ_RS04530 38212690e9e449a24c25924b6672abca 346 PANTHER PTHR30100:SF1 2 346 7.1E-142 T 14-09-2016 PAJ_RS04530 38212690e9e449a24c25924b6672abca 346 PIRSF PIRSF002465 2 344 4.6E-123 T 14-09-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 PAJ_RS04530 38212690e9e449a24c25924b6672abca 346 PANTHER PTHR30100 2 346 7.1E-142 T 14-09-2016 PAJ_RS04530 38212690e9e449a24c25924b6672abca 346 SUPERFAMILY SSF53659 4 340 4.52E-102 T 14-09-2016 PAJ_RS04530 38212690e9e449a24c25924b6672abca 346 Gene3D G3DSA:3.40.718.10 3 339 1.5E-132 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PAJ_RS04530 38212690e9e449a24c25924b6672abca 346 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 340 8.3E-133 T 14-09-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 PAJ_RS04530 38212690e9e449a24c25924b6672abca 346 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 344 140.159 T 14-09-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 368 34.039 T 14-09-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 SMART SM00859 3 123 6.7E-27 T 14-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 PANTHER PTHR10174 104 180 6.8E-159 T 14-09-2016 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 PANTHER PTHR10174 202 369 6.8E-159 T 14-09-2016 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 Gene3D G3DSA:3.40.50.720 1 143 8.6E-65 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 368 9.0E-212 T 14-09-2016 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 Gene3D G3DSA:3.30.360.10 144 351 1.7E-76 T 14-09-2016 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 SUPERFAMILY SSF55347 135 355 2.68E-78 T 14-09-2016 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 262 276 - T 14-09-2016 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 SUPERFAMILY SSF51735 1 148 1.18E-55 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 145 354 5.4E-59 T 14-09-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 PANTHER PTHR10174:SF116 202 369 6.8E-159 T 14-09-2016 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 PANTHER PTHR10174:SF116 104 180 6.8E-159 T 14-09-2016 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 122 2.1E-25 T 14-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PAJ_RS16250 299ae6c5a2177e44996e9429586b64e0 369 PIRSF PIRSF000148 1 369 2.4E-70 T 14-09-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PAJ_RS06895 1142814adcbbad5de02fbad2ceef6d85 145 PANTHER PTHR13947 37 132 7.1E-15 T 14-09-2016 PAJ_RS06895 1142814adcbbad5de02fbad2ceef6d85 145 Pfam PF00583 Acetyltransferase (GNAT) family 51 124 1.0E-9 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS06895 1142814adcbbad5de02fbad2ceef6d85 145 SUPERFAMILY SSF55729 40 145 2.06E-18 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS06895 1142814adcbbad5de02fbad2ceef6d85 145 Gene3D G3DSA:3.40.630.30 32 144 6.6E-23 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS09295 c08f9acfc4df6638adc2643f5b6bec9e 413 PANTHER PTHR30329 202 395 2.9E-79 T 14-09-2016 PAJ_RS09295 c08f9acfc4df6638adc2643f5b6bec9e 413 PANTHER PTHR30329:SF7 81 159 2.9E-79 T 14-09-2016 PAJ_RS09295 c08f9acfc4df6638adc2643f5b6bec9e 413 SUPERFAMILY SSF103088 281 395 1.96E-28 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS09295 c08f9acfc4df6638adc2643f5b6bec9e 413 PANTHER PTHR30329 81 159 2.9E-79 T 14-09-2016 PAJ_RS09295 c08f9acfc4df6638adc2643f5b6bec9e 413 TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain 260 394 1.5E-49 T 14-09-2016 IPR017733 Type VI secretion system peptidoglycan-associated domain PAJ_RS09295 c08f9acfc4df6638adc2643f5b6bec9e 413 PANTHER PTHR30329:SF7 202 395 2.9E-79 T 14-09-2016 PAJ_RS09295 c08f9acfc4df6638adc2643f5b6bec9e 413 Pfam PF09850 Type VI secretion system protein DotU 23 224 1.2E-71 T 14-09-2016 IPR017732 Type IV / VI secretion system, DotU PAJ_RS09295 c08f9acfc4df6638adc2643f5b6bec9e 413 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 21 229 6.5E-70 T 14-09-2016 IPR017732 Type IV / VI secretion system, DotU PAJ_RS09295 c08f9acfc4df6638adc2643f5b6bec9e 413 Gene3D G3DSA:3.30.1330.60 269 395 2.3E-31 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS09295 c08f9acfc4df6638adc2643f5b6bec9e 413 Pfam PF00691 OmpA family 291 389 7.0E-18 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS09465 04f3c35977b665cd4fd5218817ab34c8 438 PANTHER PTHR11986 16 438 3.2E-187 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS09465 04f3c35977b665cd4fd5218817ab34c8 438 Pfam PF00202 Aminotransferase class-III 34 428 3.0E-127 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS09465 04f3c35977b665cd4fd5218817ab34c8 438 Gene3D G3DSA:3.40.640.10 70 328 2.7E-85 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS09465 04f3c35977b665cd4fd5218817ab34c8 438 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 21 431 8.5E-161 T 14-09-2016 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 PAJ_RS09465 04f3c35977b665cd4fd5218817ab34c8 438 SUPERFAMILY SSF53383 30 430 1.51E-132 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS09465 04f3c35977b665cd4fd5218817ab34c8 438 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 246 283 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PAJ_RS09465 04f3c35977b665cd4fd5218817ab34c8 438 PANTHER PTHR11986:SF17 16 438 3.2E-187 T 14-09-2016 PAJ_RS09465 04f3c35977b665cd4fd5218817ab34c8 438 Gene3D G3DSA:3.90.1150.10 31 69 4.5E-40 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS09465 04f3c35977b665cd4fd5218817ab34c8 438 Gene3D G3DSA:3.90.1150.10 329 431 4.5E-40 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS03745 86269c884ee9bb142ca2ca8bc07ee00d 263 Gene3D G3DSA:1.10.3720.10 52 248 5.9E-28 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03745 86269c884ee9bb142ca2ca8bc07ee00d 263 PANTHER PTHR30151:SF22 5 263 2.5E-183 T 14-09-2016 PAJ_RS03745 86269c884ee9bb142ca2ca8bc07ee00d 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 247 3.0E-27 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03745 86269c884ee9bb142ca2ca8bc07ee00d 263 SUPERFAMILY SSF161098 56 237 2.49E-36 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03745 86269c884ee9bb142ca2ca8bc07ee00d 263 PANTHER PTHR30151 5 263 2.5E-183 T 14-09-2016 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 174 246 2.2E-18 T 14-09-2016 IPR006260 TonB, C-terminal GO:0006810 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 PANTHER PTHR33446 4 252 2.1E-44 T 14-09-2016 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 Pfam PF16031 TonB N-terminal region 36 170 7.8E-31 T 14-09-2016 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 SUPERFAMILY SSF74653 172 234 6.02E-18 T 14-09-2016 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 Gene3D G3DSA:3.30.1150.10 139 246 2.7E-11 T 14-09-2016 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 PANTHER PTHR33446:SF1 4 252 2.1E-44 T 14-09-2016 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 173 238 1.0E-15 T 14-09-2016 IPR006260 TonB, C-terminal GO:0006810 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 PRINTS PR01374 Gram-negative bacterial tonB protein signature 189 207 1.7E-33 T 14-09-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 PRINTS PR01374 Gram-negative bacterial tonB protein signature 208 225 1.7E-33 T 14-09-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 PRINTS PR01374 Gram-negative bacterial tonB protein signature 168 189 1.7E-33 T 14-09-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 PAJ_RS07755 8505b3d805483be1274c3d27f67dac96 252 PRINTS PR01374 Gram-negative bacterial tonB protein signature 98 108 1.7E-33 T 14-09-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 PAJ_RS09830 f64fd59316ca3da0fd323e5e6c252647 111 SMART SM00530 31 87 0.0042 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS09830 f64fd59316ca3da0fd323e5e6c252647 111 Pfam PF13560 Helix-turn-helix domain 29 83 3.9E-8 T 14-09-2016 PAJ_RS09830 f64fd59316ca3da0fd323e5e6c252647 111 Gene3D G3DSA:1.10.260.40 28 86 2.1E-10 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS09830 f64fd59316ca3da0fd323e5e6c252647 111 SUPERFAMILY SSF47413 28 86 5.9E-9 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 Gene3D G3DSA:3.40.50.800 470 571 9.2E-32 T 14-09-2016 IPR004154 Anticodon-binding PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 6.6E-51 T 14-09-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 PANTHER PTHR11451 4 244 2.7E-161 T 14-09-2016 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 567 4.6E-273 T 14-09-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 Gene3D G3DSA:3.90.960.10 255 388 2.1E-30 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 4.0E-19 T 14-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 4.0E-19 T 14-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 4.0E-19 T 14-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 4.0E-19 T 14-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 SUPERFAMILY SSF55826 219 390 3.53E-29 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 42.978 T 14-09-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 PANTHER PTHR11451:SF3 4 244 2.7E-161 T 14-09-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 PANTHER PTHR11451:SF3 399 572 2.7E-161 T 14-09-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 SUPERFAMILY SSF55681 407 478 3.25E-107 T 14-09-2016 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 SUPERFAMILY SSF55681 10 237 3.25E-107 T 14-09-2016 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 SUPERFAMILY SSF52954 462 571 2.87E-33 T 14-09-2016 IPR004154 Anticodon-binding PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 Gene3D G3DSA:3.30.930.10 392 468 1.1E-109 T 14-09-2016 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 Gene3D G3DSA:3.30.930.10 6 204 1.1E-109 T 14-09-2016 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 Pfam PF04073 Aminoacyl-tRNA editing domain 257 377 2.5E-25 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 PIRSF PIRSF001535 1 572 4.9E-278 T 14-09-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 Pfam PF03129 Anticodon binding domain 475 567 4.1E-20 T 14-09-2016 IPR004154 Anticodon-binding PAJ_RS00810 808eff3ea6c07ed8e497fb55efd2adda 572 PANTHER PTHR11451 399 572 2.7E-161 T 14-09-2016 PAJ_RS10750 8098530ce4830d0f053b26bf9ca225d4 257 Gene3D G3DSA:3.40.50.300 5 252 4.7E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10750 8098530ce4830d0f053b26bf9ca225d4 257 SMART SM00382 30 229 2.2E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10750 8098530ce4830d0f053b26bf9ca225d4 257 PANTHER PTHR24220:SF347 7 257 2.0E-183 T 14-09-2016 PAJ_RS10750 8098530ce4830d0f053b26bf9ca225d4 257 SUPERFAMILY SSF52540 6 251 1.81E-74 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10750 8098530ce4830d0f053b26bf9ca225d4 257 PIRSF PIRSF039085 2 257 9.6E-120 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PAJ_RS10750 8098530ce4830d0f053b26bf9ca225d4 257 PANTHER PTHR24220 7 257 2.0E-183 T 14-09-2016 PAJ_RS10750 8098530ce4830d0f053b26bf9ca225d4 257 Pfam PF00005 ABC transporter 21 181 1.5E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10750 8098530ce4830d0f053b26bf9ca225d4 257 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS00020 9852e45c63dc6123cc1eab025c2c4f2e 257 Pfam PF03883 Protein of unknown function (DUF328) 1 243 5.2E-93 T 14-09-2016 IPR005583 Peroxide stress protein YaaA PAJ_RS00020 9852e45c63dc6123cc1eab025c2c4f2e 257 PANTHER PTHR30283:SF3 2 254 2.4E-121 T 14-09-2016 PAJ_RS00020 9852e45c63dc6123cc1eab025c2c4f2e 257 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 38.1 T 14-09-2016 IPR005583 Peroxide stress protein YaaA PAJ_RS00020 9852e45c63dc6123cc1eab025c2c4f2e 257 PANTHER PTHR30283 2 254 2.4E-121 T 14-09-2016 PAJ_RS20590 5639833c83a972b3171e5ba31196b374 445 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS20590 5639833c83a972b3171e5ba31196b374 445 Gene3D G3DSA:3.40.50.300 15 242 2.1E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20590 5639833c83a972b3171e5ba31196b374 445 PANTHER PTHR24220:SF589 25 303 1.3E-129 T 14-09-2016 PAJ_RS20590 5639833c83a972b3171e5ba31196b374 445 SMART SM00382 52 234 2.8E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS20590 5639833c83a972b3171e5ba31196b374 445 Pfam PF09821 C-terminal AAA-associated domain 314 432 3.4E-41 T 14-09-2016 IPR018632 C-terminal AAA-associated domain PAJ_RS20590 5639833c83a972b3171e5ba31196b374 445 PANTHER PTHR24220 324 433 1.3E-129 T 14-09-2016 PAJ_RS20590 5639833c83a972b3171e5ba31196b374 445 Pfam PF00005 ABC transporter 43 182 6.5E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS20590 5639833c83a972b3171e5ba31196b374 445 PANTHER PTHR24220 25 303 1.3E-129 T 14-09-2016 PAJ_RS20590 5639833c83a972b3171e5ba31196b374 445 SUPERFAMILY SSF52540 24 263 1.36E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20590 5639833c83a972b3171e5ba31196b374 445 PANTHER PTHR24220:SF589 324 433 1.3E-129 T 14-09-2016 PAJ_RS06585 e938680b977322f99ec1ae9637b20168 194 PANTHER PTHR34406:SF1 11 192 6.3E-45 T 14-09-2016 PAJ_RS06585 e938680b977322f99ec1ae9637b20168 194 SMART SM00867 28 192 1.9E-62 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS06585 e938680b977322f99ec1ae9637b20168 194 PANTHER PTHR34406 11 192 6.3E-45 T 14-09-2016 PAJ_RS06585 e938680b977322f99ec1ae9637b20168 194 Pfam PF04264 YceI-like domain 29 191 2.4E-39 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS06585 e938680b977322f99ec1ae9637b20168 194 Gene3D G3DSA:2.40.128.110 26 192 3.1E-56 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS06585 e938680b977322f99ec1ae9637b20168 194 SUPERFAMILY SSF101874 27 192 1.09E-50 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PAJ_RS10310 3f77c0e746c264886af4a4c25d2ed390 340 PANTHER PTHR30325 1 338 1.7E-197 T 14-09-2016 PAJ_RS10310 3f77c0e746c264886af4a4c25d2ed390 340 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 6 50 9.1E-6 T 14-09-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PAJ_RS10310 3f77c0e746c264886af4a4c25d2ed390 340 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 157 337 2.9E-29 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10310 3f77c0e746c264886af4a4c25d2ed390 340 SUPERFAMILY SSF161098 134 320 1.05E-20 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10310 3f77c0e746c264886af4a4c25d2ed390 340 Gene3D G3DSA:1.10.3720.10 133 336 4.1E-20 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11870 050e5caedddb46a04766e5d3f69372ec 333 PANTHER PTHR34475:SF1 2 330 8.7E-50 T 14-09-2016 PAJ_RS11870 050e5caedddb46a04766e5d3f69372ec 333 SMART SM00530 18 79 8.0E-5 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS11870 050e5caedddb46a04766e5d3f69372ec 333 PANTHER PTHR34475 2 330 8.7E-50 T 14-09-2016 PAJ_RS11870 050e5caedddb46a04766e5d3f69372ec 333 Pfam PF13464 Domain of unknown function (DUF4115) 256 330 2.5E-23 T 14-09-2016 IPR025194 Domain of unknown function DUF4115 PAJ_RS11870 050e5caedddb46a04766e5d3f69372ec 333 Pfam PF13413 Helix-turn-helix domain 18 78 7.2E-14 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS11870 050e5caedddb46a04766e5d3f69372ec 333 SUPERFAMILY SSF47413 14 82 4.5E-8 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS11870 050e5caedddb46a04766e5d3f69372ec 333 Gene3D G3DSA:1.10.260.40 8 85 3.1E-13 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS00550 8bb10989b719af20b422fba25d67594a 126 PIRSF PIRSF006246 1 124 7.5E-52 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 PAJ_RS00550 8bb10989b719af20b422fba25d67594a 126 PANTHER PTHR21012 2 126 6.3E-65 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 PAJ_RS00550 8bb10989b719af20b422fba25d67594a 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 3.0E-53 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 PAJ_RS00550 8bb10989b719af20b422fba25d67594a 126 PANTHER PTHR21012:SF0 2 126 6.3E-65 T 14-09-2016 PAJ_RS00550 8bb10989b719af20b422fba25d67594a 126 Gene3D G3DSA:2.40.40.20 1 123 1.5E-53 T 14-09-2016 PAJ_RS00550 8bb10989b719af20b422fba25d67594a 126 Pfam PF02261 Aspartate decarboxylase 1 114 4.2E-47 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 PAJ_RS00550 8bb10989b719af20b422fba25d67594a 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 125 7.7E-59 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 PAJ_RS00550 8bb10989b719af20b422fba25d67594a 126 SUPERFAMILY SSF50692 1 120 4.72E-46 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain PAJ_RS00550 8bb10989b719af20b422fba25d67594a 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 68.075 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 PAJ_RS12230 33613a43595f7a7cde50ebc98322c126 125 Pfam PF06755 CbtA_toxin of type IV toxin-antitoxin system 1 112 5.9E-48 T 14-09-2016 IPR009610 CbtA toxin of type IV toxin-antitoxin system PAJ_RS08050 dd82f07cf2df9736379195fda60138ef 197 PIRSF PIRSF004982 5 191 7.3E-49 T 14-09-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 PAJ_RS08050 dd82f07cf2df9736379195fda60138ef 197 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 11 192 5.3E-63 T 14-09-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 PAJ_RS08050 dd82f07cf2df9736379195fda60138ef 197 PANTHER PTHR37530 1 197 1.4E-52 T 14-09-2016 PAJ_RS08050 dd82f07cf2df9736379195fda60138ef 197 Pfam PF03843 Outer membrane lipoprotein Slp family 19 167 8.9E-47 T 14-09-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 PAJ_RS20610 06d89b0a983cf131a85a39a3cc036ad2 343 Gene3D G3DSA:3.90.180.10 3 169 7.3E-46 T 14-09-2016 IPR011032 GroES-like PAJ_RS20610 06d89b0a983cf131a85a39a3cc036ad2 343 SUPERFAMILY SSF50129 4 177 1.95E-42 T 14-09-2016 IPR011032 GroES-like PAJ_RS20610 06d89b0a983cf131a85a39a3cc036ad2 343 PANTHER PTHR11695 12 331 2.2E-91 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PAJ_RS20610 06d89b0a983cf131a85a39a3cc036ad2 343 SUPERFAMILY SSF51735 144 308 3.4E-32 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20610 06d89b0a983cf131a85a39a3cc036ad2 343 PANTHER PTHR11695:SF523 12 331 2.2E-91 T 14-09-2016 PAJ_RS20610 06d89b0a983cf131a85a39a3cc036ad2 343 Pfam PF00107 Zinc-binding dehydrogenase 178 303 1.8E-22 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PAJ_RS20610 06d89b0a983cf131a85a39a3cc036ad2 343 Gene3D G3DSA:3.40.50.720 170 289 1.1E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20610 06d89b0a983cf131a85a39a3cc036ad2 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 136 2.1E-30 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PAJ_RS15270 e4ad9ac7c38a1a316a6f2f6003c80f35 439 PANTHER PTHR22777 1 439 0.0 T 14-09-2016 PAJ_RS15270 e4ad9ac7c38a1a316a6f2f6003c80f35 439 Gene3D G3DSA:3.10.580.10 198 335 3.0E-10 T 14-09-2016 PAJ_RS15270 e4ad9ac7c38a1a316a6f2f6003c80f35 439 Gene3D G3DSA:3.30.465.10 342 425 4.5E-28 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS15270 e4ad9ac7c38a1a316a6f2f6003c80f35 439 SMART SM01091 346 426 6.6E-29 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS15270 e4ad9ac7c38a1a316a6f2f6003c80f35 439 PANTHER PTHR22777:SF16 1 439 0.0 T 14-09-2016 PAJ_RS15270 e4ad9ac7c38a1a316a6f2f6003c80f35 439 Pfam PF03471 Transporter associated domain 347 425 1.6E-21 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS15270 e4ad9ac7c38a1a316a6f2f6003c80f35 439 Pfam PF01595 Domain of unknown function DUF21 6 197 2.2E-38 T 14-09-2016 IPR002550 Domain of unknown function DUF21 PAJ_RS15270 e4ad9ac7c38a1a316a6f2f6003c80f35 439 SUPERFAMILY SSF56176 344 428 1.28E-23 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS15270 e4ad9ac7c38a1a316a6f2f6003c80f35 439 SUPERFAMILY SSF54631 200 335 1.22E-19 T 14-09-2016 PAJ_RS20685 cb1f80c39267040a551c22edf5641f06 406 PANTHER PTHR23508:SF10 5 404 1.2E-146 T 14-09-2016 PAJ_RS20685 cb1f80c39267040a551c22edf5641f06 406 ProSitePatterns PS00217 Sugar transport proteins signature 2. 107 132 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS20685 cb1f80c39267040a551c22edf5641f06 406 PANTHER PTHR23508 5 404 1.2E-146 T 14-09-2016 PAJ_RS20685 cb1f80c39267040a551c22edf5641f06 406 Pfam PF07690 Major Facilitator Superfamily 20 247 1.0E-30 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS20685 cb1f80c39267040a551c22edf5641f06 406 SUPERFAMILY SSF103473 5 395 3.27E-73 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20685 cb1f80c39267040a551c22edf5641f06 406 Gene3D G3DSA:1.20.1250.20 13 197 2.4E-34 T 14-09-2016 PAJ_RS20685 cb1f80c39267040a551c22edf5641f06 406 Gene3D G3DSA:1.20.1250.20 209 387 3.5E-24 T 14-09-2016 PAJ_RS05455 67af5af6a37a9eda07764d448068f175 88 Gene3D G3DSA:1.10.10.60 13 84 9.5E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS05455 67af5af6a37a9eda07764d448068f175 88 SUPERFAMILY SSF46689 1 73 4.48E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS05455 67af5af6a37a9eda07764d448068f175 88 PANTHER PTHR33609:SF1 2 87 2.0E-51 T 14-09-2016 PAJ_RS05455 67af5af6a37a9eda07764d448068f175 88 PANTHER PTHR33609 2 87 2.0E-51 T 14-09-2016 PAJ_RS05455 67af5af6a37a9eda07764d448068f175 88 Pfam PF01527 Transposase 2 71 1.7E-21 T 14-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PAJ_RS00320 2ff75c9d197cf3437102a4161e8008a9 404 Hamap MF_00913 Putative lipid II flippase FtsW [ftsW]. 33 400 42.516 T 14-09-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 PAJ_RS00320 2ff75c9d197cf3437102a4161e8008a9 404 PANTHER PTHR30474 15 401 9.9E-191 T 14-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 PAJ_RS00320 2ff75c9d197cf3437102a4161e8008a9 404 Pfam PF01098 Cell cycle protein 37 392 2.6E-124 T 14-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 PAJ_RS00320 2ff75c9d197cf3437102a4161e8008a9 404 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 35 390 1.5E-136 T 14-09-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 PAJ_RS00320 2ff75c9d197cf3437102a4161e8008a9 404 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 349 373 - T 14-09-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 PAJ_RS00320 2ff75c9d197cf3437102a4161e8008a9 404 PANTHER PTHR30474:SF2 15 401 9.9E-191 T 14-09-2016 PAJ_RS03365 036bc9748e419eec2c57c5de5b5c52d4 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 300 5.9E-31 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03365 036bc9748e419eec2c57c5de5b5c52d4 301 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 67 6.7E-12 T 14-09-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PAJ_RS03365 036bc9748e419eec2c57c5de5b5c52d4 301 PANTHER PTHR30465 16 301 8.5E-203 T 14-09-2016 PAJ_RS03365 036bc9748e419eec2c57c5de5b5c52d4 301 SUPERFAMILY SSF161098 94 281 1.23E-30 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03365 036bc9748e419eec2c57c5de5b5c52d4 301 PANTHER PTHR30465:SF57 16 301 8.5E-203 T 14-09-2016 PAJ_RS03365 036bc9748e419eec2c57c5de5b5c52d4 301 Gene3D G3DSA:1.10.3720.10 90 297 7.4E-30 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 430 689 2.3E-11 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 PANTHER PTHR30425:SF3 525 694 4.3E-123 T 14-09-2016 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 PANTHER PTHR30425:SF3 358 472 4.3E-123 T 14-09-2016 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 SUPERFAMILY SSF50969 85 347 8.63E-12 T 14-09-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 SUPERFAMILY SSF161098 383 473 9.81E-7 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 Gene3D G3DSA:2.130.10.10 107 359 5.0E-10 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 PANTHER PTHR30425 525 694 4.3E-123 T 14-09-2016 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 PANTHER PTHR30425 358 472 4.3E-123 T 14-09-2016 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 SUPERFAMILY SSF161098 492 682 3.66E-20 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 Gene3D G3DSA:1.10.3720.10 30 54 5.3E-46 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 Gene3D G3DSA:1.10.3720.10 527 690 5.3E-46 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11675 46bc9c9ab7aa4fa6ab215ea373fcad63 698 Gene3D G3DSA:1.10.3720.10 366 471 5.3E-46 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12065 be6c0cf99365a6ecbb0085d7873db203 217 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 87 1.8E-36 T 14-09-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 PAJ_RS12065 be6c0cf99365a6ecbb0085d7873db203 217 SUPERFAMILY SSF89069 1 66 1.26E-21 T 14-09-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 PAJ_RS12065 be6c0cf99365a6ecbb0085d7873db203 217 PANTHER PTHR38104 1 217 2.4E-78 T 14-09-2016 PAJ_RS12065 be6c0cf99365a6ecbb0085d7873db203 217 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 133 187 1.3E-24 T 14-09-2016 IPR005573 Anti sigma-E protein RseA, C-terminal PAJ_RS12065 be6c0cf99365a6ecbb0085d7873db203 217 PIRSF PIRSF016938 1 206 1.8E-31 T 14-09-2016 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0006950|GO:0016989 PAJ_RS00495 e0fb93434e8af0febc5dddc235b10ffb 390 Gene3D G3DSA:3.40.50.2000 1 241 3.2E-20 T 14-09-2016 PAJ_RS00495 e0fb93434e8af0febc5dddc235b10ffb 390 PANTHER PTHR11926:SF394 1 346 5.8E-14 T 14-09-2016 PAJ_RS00495 e0fb93434e8af0febc5dddc235b10ffb 390 Gene3D G3DSA:3.40.50.2000 245 345 3.4E-14 T 14-09-2016 PAJ_RS00495 e0fb93434e8af0febc5dddc235b10ffb 390 SUPERFAMILY SSF53756 1 346 9.07E-37 T 14-09-2016 PAJ_RS00495 e0fb93434e8af0febc5dddc235b10ffb 390 PANTHER PTHR11926 1 346 5.8E-14 T 14-09-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 SUPERFAMILY SSF55816 363 541 7.85E-51 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 PANTHER PTHR11575 2 549 1.8E-186 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 PANTHER PTHR11575:SF27 2 549 1.8E-186 T 14-09-2016 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 Pfam PF02872 5'-nucleotidase, C-terminal domain 363 506 3.3E-35 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 ProSitePatterns PS00786 5'-nucleotidase signature 2. 108 119 - T 14-09-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 PRINTS PR01607 Apyrase family signature 416 439 1.6E-49 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 PRINTS PR01607 Apyrase family signature 31 49 1.6E-49 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 PRINTS PR01607 Apyrase family signature 282 302 1.6E-49 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 PRINTS PR01607 Apyrase family signature 483 502 1.6E-49 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 PRINTS PR01607 Apyrase family signature 206 223 1.6E-49 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 PRINTS PR01607 Apyrase family signature 237 260 1.6E-49 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 Gene3D G3DSA:3.60.21.10 29 359 3.1E-91 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 Gene3D G3DSA:3.90.780.10 363 538 3.5E-52 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 SUPERFAMILY SSF56300 28 359 9.49E-88 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like PAJ_RS01910 d2d8993953df6f00b402bc798c4ec2f7 588 Pfam PF00149 Calcineurin-like phosphoesterase 33 254 3.1E-14 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 Pfam PF01011 PQQ enzyme repeat 445 471 2.5E-7 T 14-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 Pfam PF13360 PQQ-like domain 199 380 1.6E-7 T 14-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 Pfam PF13360 PQQ-like domain 675 775 3.2E-7 T 14-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 PANTHER PTHR32303 580 794 1.1E-301 T 14-09-2016 PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 PANTHER PTHR32303 131 511 1.1E-301 T 14-09-2016 PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 Gene3D G3DSA:2.140.10.10 163 537 6.2E-165 T 14-09-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 Gene3D G3DSA:2.140.10.10 572 795 6.2E-165 T 14-09-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 SUPERFAMILY SSF50998 165 525 5.36E-161 T 14-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 SUPERFAMILY SSF50998 561 793 5.36E-161 T 14-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 SMART SM00564 222 253 0.0028 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 SMART SM00564 285 317 86.0 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 SMART SM00564 716 749 0.016 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 SMART SM00564 404 461 84.0 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 SMART SM00564 342 383 0.7 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 SMART SM00564 668 692 760.0 T 14-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 407 428 - T 14-09-2016 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 14 793 0.0 T 14-09-2016 IPR017511 PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related GO:0016021|GO:0016614|GO:0048038|GO:0055114 PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 PANTHER PTHR32303:SF4 580 794 1.1E-301 T 14-09-2016 PAJ_RS19200 d70280b7c978b6e20f31b159030a06c0 796 PANTHER PTHR32303:SF4 131 511 1.1E-301 T 14-09-2016 PAJ_RS19315 86ed31c2c901269e7036350e7a8ce2a7 250 Pfam PF13098 Thioredoxin-like domain 119 245 6.8E-16 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19315 86ed31c2c901269e7036350e7a8ce2a7 250 PANTHER PTHR35272:SF2 1 246 1.4E-83 T 14-09-2016 PAJ_RS19315 86ed31c2c901269e7036350e7a8ce2a7 250 Gene3D G3DSA:3.40.30.10 109 245 4.7E-30 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19315 86ed31c2c901269e7036350e7a8ce2a7 250 SUPERFAMILY SSF52833 90 245 7.7E-32 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19315 86ed31c2c901269e7036350e7a8ce2a7 250 SUPERFAMILY SSF54423 22 79 9.29E-21 T 14-09-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PAJ_RS19315 86ed31c2c901269e7036350e7a8ce2a7 250 PANTHER PTHR35272 1 246 1.4E-83 T 14-09-2016 PAJ_RS19315 86ed31c2c901269e7036350e7a8ce2a7 250 Gene3D G3DSA:3.10.450.70 57 81 6.1E-4 T 14-09-2016 IPR009094 Disulphide bond isomerase, DsbC, N-terminal PAJ_RS00640 0f5460ede18cb4aeb583cef38bb6b768 264 Pfam PF01497 Periplasmic binding protein 24 219 5.3E-24 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 PAJ_RS00640 0f5460ede18cb4aeb583cef38bb6b768 264 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 3 264 44.7 T 14-09-2016 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 PAJ_RS00640 0f5460ede18cb4aeb583cef38bb6b768 264 SUPERFAMILY SSF53807 21 262 1.26E-58 T 14-09-2016 PAJ_RS00640 0f5460ede18cb4aeb583cef38bb6b768 264 Gene3D G3DSA:3.40.50.1980 141 262 1.6E-34 T 14-09-2016 PAJ_RS00640 0f5460ede18cb4aeb583cef38bb6b768 264 Gene3D G3DSA:3.40.50.1980 21 137 3.0E-31 T 14-09-2016 PAJ_RS00640 0f5460ede18cb4aeb583cef38bb6b768 264 PANTHER PTHR30535 16 262 2.4E-49 T 14-09-2016 PAJ_RS15585 f1a73d72605efd08f2cdd4327d227172 80 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 1 78 3.0E-24 T 14-09-2016 IPR010398 Protein of unknown function DUF997 PAJ_RS15585 f1a73d72605efd08f2cdd4327d227172 80 Pfam PF06196 Protein of unknown function (DUF997) 7 77 1.3E-26 T 14-09-2016 IPR010398 Protein of unknown function DUF997 PAJ_RS15585 f1a73d72605efd08f2cdd4327d227172 80 PANTHER PTHR39174:SF1 1 79 5.8E-28 T 14-09-2016 PAJ_RS15585 f1a73d72605efd08f2cdd4327d227172 80 PANTHER PTHR39174 1 79 5.8E-28 T 14-09-2016 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 125 4.4E-25 T 14-09-2016 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 Gene3D G3DSA:3.90.100.10 589 712 6.8E-39 T 14-09-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 Gene3D G3DSA:3.90.1150.10 427 588 4.2E-62 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 PANTHER PTHR11751 132 460 9.7E-247 T 14-09-2016 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 PANTHER PTHR11751 484 492 9.7E-247 T 14-09-2016 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 PANTHER PTHR11751 512 632 9.7E-247 T 14-09-2016 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 PIRSF PIRSF009393 2 714 2.2E-271 T 14-09-2016 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 572 701 2.6E-46 T 14-09-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 363 377 - T 14-09-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 SUPERFAMILY SSF53383 131 564 5.79E-97 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 PANTHER PTHR11751:SF406 132 460 9.7E-247 T 14-09-2016 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 PANTHER PTHR11751:SF406 484 492 9.7E-247 T 14-09-2016 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 PANTHER PTHR11751:SF406 512 632 9.7E-247 T 14-09-2016 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 131 547 1.6E-183 T 14-09-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 SUPERFAMILY SSF55904 569 710 2.35E-45 T 14-09-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PAJ_RS00775 d15afd755ba2dc6d2a201819ed4c4b07 715 Gene3D G3DSA:3.40.640.10 131 424 6.8E-99 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS19325 3d3536e5547d846ecbd48cf4e05d180e 141 PANTHER PTHR30574:SF1 9 134 5.2E-27 T 14-09-2016 PAJ_RS19325 3d3536e5547d846ecbd48cf4e05d180e 141 PANTHER PTHR30574 9 134 5.2E-27 T 14-09-2016 PAJ_RS05180 9f492b382fcbe446ab926dee7cbf441b 298 Gene3D G3DSA:3.10.310.10 3 128 8.0E-38 T 14-09-2016 PAJ_RS05180 9f492b382fcbe446ab926dee7cbf441b 298 SUPERFAMILY SSF54506 1 296 8.15E-64 T 14-09-2016 PAJ_RS05180 9f492b382fcbe446ab926dee7cbf441b 298 PANTHER PTHR13774 1 297 1.9E-80 T 14-09-2016 PAJ_RS05180 9f492b382fcbe446ab926dee7cbf441b 298 Pfam PF02567 Phenazine biosynthesis-like protein 9 293 6.9E-58 T 14-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- PAJ_RS05180 9f492b382fcbe446ab926dee7cbf441b 298 PIRSF PIRSF016184 1 297 6.2E-77 T 14-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- PAJ_RS05180 9f492b382fcbe446ab926dee7cbf441b 298 PANTHER PTHR13774:SF15 1 297 1.9E-80 T 14-09-2016 PAJ_RS05180 9f492b382fcbe446ab926dee7cbf441b 298 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 4 296 1.4E-62 T 14-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- PAJ_RS05180 9f492b382fcbe446ab926dee7cbf441b 298 Gene3D G3DSA:3.10.310.10 135 286 8.9E-33 T 14-09-2016 PAJ_RS19485 d2a7fba30e30d19095c1be7f447f255e 179 SUPERFAMILY SSF52540 11 136 1.45E-11 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19485 d2a7fba30e30d19095c1be7f447f255e 179 Gene3D G3DSA:3.40.50.300 12 110 9.7E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19485 d2a7fba30e30d19095c1be7f447f255e 179 PANTHER PTHR37816 13 137 5.1E-19 T 14-09-2016 PAJ_RS19485 d2a7fba30e30d19095c1be7f447f255e 179 PANTHER PTHR37816:SF1 13 137 5.1E-19 T 14-09-2016 PAJ_RS08660 b6074b21d6c574f5d95b0331bb5e8072 70 Pfam PF02665 Nitrate reductase gamma subunit 3 69 5.4E-20 T 14-09-2016 IPR023234 NarG-like domain PAJ_RS08660 b6074b21d6c574f5d95b0331bb5e8072 70 PANTHER PTHR30598:SF4 1 69 1.6E-29 T 14-09-2016 PAJ_RS08660 b6074b21d6c574f5d95b0331bb5e8072 70 SUPERFAMILY SSF103501 1 70 3.01E-17 T 14-09-2016 IPR023234 NarG-like domain PAJ_RS08660 b6074b21d6c574f5d95b0331bb5e8072 70 PANTHER PTHR30598 1 69 1.6E-29 T 14-09-2016 PAJ_RS08660 b6074b21d6c574f5d95b0331bb5e8072 70 Gene3D G3DSA:1.20.950.20 4 61 9.4E-14 T 14-09-2016 PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 288 302 1.2E-5 T 14-09-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 316 329 1.2E-5 T 14-09-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 208 223 1.2E-5 T 14-09-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 3.0E-42 T 14-09-2016 PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 492 6.3E-214 T 14-09-2016 IPR004482 Mg chelatase-related protein PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 Gene3D G3DSA:3.40.50.300 189 385 1.3E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 SMART SM00382 209 389 2.1E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 SUPERFAMILY SSF52540 189 500 9.89E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 400 492 1.9E-30 T 14-09-2016 IPR025158 Mg chelatase-related protein, C-terminal domain PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 SUPERFAMILY SSF54211 9 169 2.88E-28 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 PANTHER PTHR32039:SF7 1 503 8.1E-254 T 14-09-2016 IPR004482 Mg chelatase-related protein PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 Gene3D G3DSA:3.30.230.10 6 155 2.2E-24 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 PANTHER PTHR32039 1 503 8.1E-254 T 14-09-2016 PAJ_RS16895 94fb154eed7231b826dc23e41c6483e1 506 Pfam PF01078 Magnesium chelatase, subunit ChlI 189 389 6.7E-90 T 14-09-2016 IPR000523 Magnesium chelatase ChlI domain PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 PANTHER PTHR33866 112 263 1.4E-166 T 14-09-2016 PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 PANTHER PTHR33866:SF1 112 263 1.4E-166 T 14-09-2016 PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 PANTHER PTHR33866 15 84 1.4E-166 T 14-09-2016 PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 SUPERFAMILY SSF56276 112 174 4.71E-23 T 14-09-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 SUPERFAMILY SSF56276 43 84 4.71E-23 T 14-09-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 3 261 2.0E-148 T 14-09-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 PANTHER PTHR33866:SF1 15 84 1.4E-166 T 14-09-2016 PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 Gene3D G3DSA:3.60.90.10 33 186 2.1E-46 T 14-09-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 269 177.254 T 14-09-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 PIRSF PIRSF001356 1 263 4.2E-156 T 14-09-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 PAJ_RS00505 9df8721ca9834ec836139bca7dc2f332 269 Pfam PF02675 S-adenosylmethionine decarboxylase 33 169 7.9E-30 T 14-09-2016 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 PAJ_RS17120 31df92ec4229d3ed17531f5f4e9d1aa3 257 Gene3D G3DSA:3.30.428.30 30 251 2.2E-91 T 14-09-2016 PAJ_RS17120 31df92ec4229d3ed17531f5f4e9d1aa3 257 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 34 249 6.2E-86 T 14-09-2016 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26|UniPathway: UPA00609 PAJ_RS17120 31df92ec4229d3ed17531f5f4e9d1aa3 257 SUPERFAMILY SSF54197 34 249 3.74E-81 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 PAJ_RS17120 31df92ec4229d3ed17531f5f4e9d1aa3 257 PIRSF PIRSF001273 3 254 6.2E-80 T 14-09-2016 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26|UniPathway: UPA00609 PAJ_RS16735 c49e768b55ccbf7133fab6eebadcd2b7 305 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 296 9.2E-70 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain PAJ_RS16735 c49e768b55ccbf7133fab6eebadcd2b7 305 SUPERFAMILY SSF53590 2 304 2.35E-80 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain PAJ_RS16735 c49e768b55ccbf7133fab6eebadcd2b7 305 PANTHER PTHR12304 2 303 5.6E-89 T 14-09-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase PAJ_RS16735 c49e768b55ccbf7133fab6eebadcd2b7 305 Gene3D G3DSA:3.90.245.10 2 304 4.3E-90 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 PANTHER PTHR11552 1 553 5.7E-261 T 14-09-2016 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 259 273 - T 14-09-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 SUPERFAMILY SSF54373 295 477 1.67E-66 T 14-09-2016 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 PIRSF PIRSF000137 1 537 5.3E-143 T 14-09-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 TIGRFAM TIGR01810 betA: choline dehydrogenase 4 537 1.4E-290 T 14-09-2016 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 Pfam PF00732 GMC oxidoreductase 3 300 3.8E-101 T 14-09-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 SUPERFAMILY SSF51905 1 293 7.29E-89 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 SUPERFAMILY SSF51905 476 534 7.29E-89 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 Pfam PF05199 GMC oxidoreductase 393 527 3.6E-41 T 14-09-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 82 105 - T 14-09-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 PANTHER PTHR11552:SF135 1 553 5.7E-261 T 14-09-2016 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 Gene3D G3DSA:3.50.50.60 470 533 1.6E-122 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 Gene3D G3DSA:3.50.50.60 2 127 1.6E-122 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 Gene3D G3DSA:3.50.50.60 190 318 1.6E-122 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS08215 cecb1ebc0a265005f1d8541429679057 560 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 1 554 60.489 T 14-09-2016 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PAJ_RS14360 4c61e653366d96dac19d8ac3ce75b2f5 140 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 15 136 3.5E-64 T 14-09-2016 IPR014170 TonB system transport protein ExbD type-1 GO:0006810|GO:0016020 PAJ_RS14360 4c61e653366d96dac19d8ac3ce75b2f5 140 PANTHER PTHR30558 13 136 9.7E-73 T 14-09-2016 PAJ_RS14360 4c61e653366d96dac19d8ac3ce75b2f5 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 133 2.8E-29 T 14-09-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 PAJ_RS14360 4c61e653366d96dac19d8ac3ce75b2f5 140 PANTHER PTHR30558:SF9 13 136 9.7E-73 T 14-09-2016 PAJ_RS03400 6eb9b0e47a8a0829990f49847d8c9680 201 PANTHER PTHR14969:SF20 2 196 2.7E-61 T 14-09-2016 PAJ_RS03400 6eb9b0e47a8a0829990f49847d8c9680 201 Pfam PF01569 PAP2 superfamily 66 170 1.4E-14 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS03400 6eb9b0e47a8a0829990f49847d8c9680 201 SUPERFAMILY SSF48317 2 200 1.7E-37 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS03400 6eb9b0e47a8a0829990f49847d8c9680 201 PANTHER PTHR14969 2 196 2.7E-61 T 14-09-2016 PAJ_RS03400 6eb9b0e47a8a0829990f49847d8c9680 201 Gene3D G3DSA:1.20.144.10 3 169 1.6E-24 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS03400 6eb9b0e47a8a0829990f49847d8c9680 201 SMART SM00014 63 168 5.7E-23 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 Pfam PF03412 Peptidase C39 family 5 113 3.0E-14 T 14-09-2016 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 Gene3D G3DSA:1.20.1560.10 146 453 3.4E-78 T 14-09-2016 PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 Pfam PF00005 ABC transporter 489 638 6.3E-36 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 16 708 3.0E-301 T 14-09-2016 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 Gene3D G3DSA:3.40.50.300 471 702 5.5E-82 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 SMART SM00382 498 684 6.2E-21 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 ProSitePatterns PS00211 ABC transporters family signature. 610 624 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 PANTHER PTHR24221 128 708 3.1E-284 T 14-09-2016 PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 PANTHER PTHR24221:SF246 128 708 3.1E-284 T 14-09-2016 PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 Gene3D G3DSA:3.90.70.10 13 133 6.1E-26 T 14-09-2016 PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 Pfam PF00664 ABC transporter transmembrane region 159 422 1.9E-49 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 SUPERFAMILY SSF90123 146 453 3.01E-65 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS06970 3ef0a37b13af21a2b103663318e36feb 710 SUPERFAMILY SSF52540 465 708 9.13E-90 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 Gene3D G3DSA:3.50.50.60 14 257 1.6E-101 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 Gene3D G3DSA:3.50.50.60 363 422 1.6E-101 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 SUPERFAMILY SSF51905 370 461 1.35E-73 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 SUPERFAMILY SSF51905 18 269 1.35E-73 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 22 534 3.0E-219 T 14-09-2016 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 SUPERFAMILY SSF46977 440 543 3.27E-31 T 14-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 369 391 1.6E-9 T 14-09-2016 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 25 44 1.6E-9 T 14-09-2016 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 Pfam PF02910 Fumarate reductase flavoprotein C-term 455 535 2.3E-14 T 14-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 Gene3D G3DSA:1.20.58.100 441 539 5.0E-33 T 14-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 SUPERFAMILY SSF56425 252 367 1.79E-40 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 Pfam PF00890 FAD binding domain 24 406 2.5E-101 T 14-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 PANTHER PTHR11632 19 547 1.7E-265 T 14-09-2016 PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 Gene3D G3DSA:3.90.700.10 258 362 3.4E-36 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PAJ_RS12075 7730d8ffc4038962a974058c94ae0b70 553 PANTHER PTHR11632:SF27 19 547 1.7E-265 T 14-09-2016 PAJ_RS02795 45a96d48a6b74c5b9690398c04313810 174 ProSitePatterns PS01068 OmpA-like domain. 106 150 - T 14-09-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 PAJ_RS02795 45a96d48a6b74c5b9690398c04313810 174 Gene3D G3DSA:3.30.1330.60 62 173 2.1E-34 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS02795 45a96d48a6b74c5b9690398c04313810 174 SUPERFAMILY SSF103088 62 173 2.22E-34 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS02795 45a96d48a6b74c5b9690398c04313810 174 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 72 174 3.0E-47 T 14-09-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 PAJ_RS02795 45a96d48a6b74c5b9690398c04313810 174 PANTHER PTHR30128 44 174 1.1E-66 T 14-09-2016 PAJ_RS02795 45a96d48a6b74c5b9690398c04313810 174 Pfam PF00691 OmpA family 73 168 9.6E-22 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS02795 45a96d48a6b74c5b9690398c04313810 174 PRINTS PR01021 OMPA domain signature 119 135 1.2E-16 T 14-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PAJ_RS02795 45a96d48a6b74c5b9690398c04313810 174 PRINTS PR01021 OMPA domain signature 74 96 1.2E-16 T 14-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PAJ_RS02795 45a96d48a6b74c5b9690398c04313810 174 PRINTS PR01021 OMPA domain signature 104 119 1.2E-16 T 14-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PAJ_RS02795 45a96d48a6b74c5b9690398c04313810 174 PANTHER PTHR30128:SF18 44 174 1.1E-66 T 14-09-2016 PAJ_RS16350 3a175b67f79325fbd860e3d43065828f 128 SUPERFAMILY SSF55729 22 120 3.54E-10 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS16350 3a175b67f79325fbd860e3d43065828f 128 Gene3D G3DSA:3.40.630.30 23 120 3.2E-8 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS16350 3a175b67f79325fbd860e3d43065828f 128 Pfam PF12568 Acetyltransferase (GNAT) domain 2 126 3.6E-46 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS16350 3a175b67f79325fbd860e3d43065828f 128 Hamap MF_02018 PanD maturation factor [panM]. 1 128 33.996 T 14-09-2016 IPR032900 PanD maturation factor PanM GO:0015940|GO:0031638 PAJ_RS13585 7e7324b5039b6f6696342e5d2d809ce4 176 Gene3D G3DSA:1.10.10.10 21 122 1.0E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13585 7e7324b5039b6f6696342e5d2d809ce4 176 PANTHER PTHR33169:SF2 23 173 9.2E-20 T 14-09-2016 PAJ_RS13585 7e7324b5039b6f6696342e5d2d809ce4 176 Pfam PF03551 Transcriptional regulator PadR-like family 37 106 9.9E-16 T 14-09-2016 IPR005149 Transcription regulator PadR, N-terminal PAJ_RS13585 7e7324b5039b6f6696342e5d2d809ce4 176 PANTHER PTHR33169 23 173 9.2E-20 T 14-09-2016 PAJ_RS13585 7e7324b5039b6f6696342e5d2d809ce4 176 SUPERFAMILY SSF46785 33 165 2.23E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS07725 66811ed8310e18225cfebdee85bae8f2 104 Pfam PF04972 BON domain 37 104 3.9E-22 T 14-09-2016 IPR007055 BON domain PAJ_RS07725 66811ed8310e18225cfebdee85bae8f2 104 PANTHER PTHR34606 1 104 4.0E-45 T 14-09-2016 PAJ_RS07725 66811ed8310e18225cfebdee85bae8f2 104 SMART SM00749 42 104 1.2E-5 T 14-09-2016 IPR014004 Transport-associated and nodulation domain, bacteria PAJ_RS07725 66811ed8310e18225cfebdee85bae8f2 104 PANTHER PTHR34606:SF1 1 104 4.0E-45 T 14-09-2016 PAJ_RS19600 5da412e5e0c0f041c3565360e99b0f01 104 Pfam PF03091 CutA1 divalent ion tolerance protein 4 101 5.9E-32 T 14-09-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 PAJ_RS19600 5da412e5e0c0f041c3565360e99b0f01 104 SUPERFAMILY SSF54913 2 102 1.37E-33 T 14-09-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta PAJ_RS19600 5da412e5e0c0f041c3565360e99b0f01 104 PANTHER PTHR23419 4 104 9.2E-38 T 14-09-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 PAJ_RS19600 5da412e5e0c0f041c3565360e99b0f01 104 Gene3D G3DSA:3.30.70.830 2 103 6.0E-37 T 14-09-2016 PAJ_RS16955 f81df73f22a2f7c953aeecc269a26b59 618 Pfam PF07715 TonB-dependent Receptor Plug Domain 44 150 1.9E-28 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS16955 f81df73f22a2f7c953aeecc269a26b59 618 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 9 618 5.5E-235 T 14-09-2016 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 PAJ_RS16955 f81df73f22a2f7c953aeecc269a26b59 618 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 601 618 - T 14-09-2016 IPR010917 TonB-dependent receptor, conserved site PAJ_RS16955 f81df73f22a2f7c953aeecc269a26b59 618 PANTHER PTHR30069:SF10 5 594 5.3E-284 T 14-09-2016 PAJ_RS16955 f81df73f22a2f7c953aeecc269a26b59 618 PANTHER PTHR30069 5 594 5.3E-284 T 14-09-2016 PAJ_RS16955 f81df73f22a2f7c953aeecc269a26b59 618 Gene3D G3DSA:2.40.170.20 154 618 7.0E-89 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS16955 f81df73f22a2f7c953aeecc269a26b59 618 Pfam PF00593 TonB dependent receptor 397 616 1.4E-30 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS16955 f81df73f22a2f7c953aeecc269a26b59 618 SUPERFAMILY SSF56935 33 618 3.36E-120 T 14-09-2016 PAJ_RS16955 f81df73f22a2f7c953aeecc269a26b59 618 Gene3D G3DSA:2.170.130.10 33 153 6.8E-39 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS16955 f81df73f22a2f7c953aeecc269a26b59 618 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 1 618 36.317 T 14-09-2016 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 PAJ_RS03415 15f9f52b32b2c58bccca01be300f9470 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 3 85 1.8E-42 T 14-09-2016 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 PAJ_RS03415 15f9f52b32b2c58bccca01be300f9470 87 PANTHER PTHR10168 1 82 7.7E-39 T 14-09-2016 PAJ_RS03415 15f9f52b32b2c58bccca01be300f9470 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 14-09-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 PAJ_RS03415 15f9f52b32b2c58bccca01be300f9470 87 Pfam PF00462 Glutaredoxin 4 69 2.7E-16 T 14-09-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 PAJ_RS03415 15f9f52b32b2c58bccca01be300f9470 87 Gene3D G3DSA:3.40.30.10 4 82 5.2E-24 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS03415 15f9f52b32b2c58bccca01be300f9470 87 SUPERFAMILY SSF52833 4 82 2.25E-19 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS03415 15f9f52b32b2c58bccca01be300f9470 87 PRINTS PR00160 Glutaredoxin signature 52 65 6.0E-10 T 14-09-2016 IPR014025 Glutaredoxin subgroup PAJ_RS03415 15f9f52b32b2c58bccca01be300f9470 87 PRINTS PR00160 Glutaredoxin signature 3 21 6.0E-10 T 14-09-2016 IPR014025 Glutaredoxin subgroup PAJ_RS03415 15f9f52b32b2c58bccca01be300f9470 87 PRINTS PR00160 Glutaredoxin signature 66 79 6.0E-10 T 14-09-2016 IPR014025 Glutaredoxin subgroup PAJ_RS03415 15f9f52b32b2c58bccca01be300f9470 87 PANTHER PTHR10168:SF85 1 82 7.7E-39 T 14-09-2016 PAJ_RS01435 a5ce3d62a45cf2a033115cd346a479fc 100 Pfam PF07769 psiF repeat 67 98 3.2E-16 T 14-09-2016 IPR011690 Phosphate-starvation-induced PsiF repeat PAJ_RS01435 a5ce3d62a45cf2a033115cd346a479fc 100 Pfam PF07769 psiF repeat 24 57 1.3E-16 T 14-09-2016 IPR011690 Phosphate-starvation-induced PsiF repeat PAJ_RS03290 f17997e7f02c805591bd5c5d00cf545f 170 Gene3D G3DSA:2.40.160.20 24 170 9.5E-42 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS03290 f17997e7f02c805591bd5c5d00cf545f 170 Pfam PF13505 Outer membrane protein beta-barrel domain 8 170 7.3E-22 T 14-09-2016 IPR027385 Outer membrane protein beta-barrel PAJ_RS03290 f17997e7f02c805591bd5c5d00cf545f 170 SUPERFAMILY SSF56925 26 170 4.71E-28 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS03290 f17997e7f02c805591bd5c5d00cf545f 170 PANTHER PTHR35892 2 170 4.6E-108 T 14-09-2016 PAJ_RS03290 f17997e7f02c805591bd5c5d00cf545f 170 PANTHER PTHR35892:SF3 2 170 4.6E-108 T 14-09-2016 PAJ_RS03290 f17997e7f02c805591bd5c5d00cf545f 170 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 45 53 - T 14-09-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PAJ_RS03290 f17997e7f02c805591bd5c5d00cf545f 170 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 83 106 1.3E-36 T 14-09-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PAJ_RS03290 f17997e7f02c805591bd5c5d00cf545f 170 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 44 56 1.3E-36 T 14-09-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PAJ_RS03290 f17997e7f02c805591bd5c5d00cf545f 170 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 131 152 1.3E-36 T 14-09-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PAJ_RS03290 f17997e7f02c805591bd5c5d00cf545f 170 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 158 169 1.3E-36 T 14-09-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PAJ_RS17060 6c643468b770a4ed3d8fe09b80eeeea7 163 Pfam PF00227 Proteasome subunit 1 156 2.9E-18 T 14-09-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 PAJ_RS17060 6c643468b770a4ed3d8fe09b80eeeea7 163 PANTHER PTHR32194 1 159 6.8E-115 T 14-09-2016 PAJ_RS17060 6c643468b770a4ed3d8fe09b80eeeea7 163 Gene3D G3DSA:3.60.20.10 1 160 1.6E-78 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS17060 6c643468b770a4ed3d8fe09b80eeeea7 163 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 1 159 3.8E-80 T 14-09-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 PAJ_RS17060 6c643468b770a4ed3d8fe09b80eeeea7 163 PIRSF PIRSF039093 1 162 4.4E-82 T 14-09-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 PAJ_RS17060 6c643468b770a4ed3d8fe09b80eeeea7 163 SUPERFAMILY SSF56235 1 159 3.46E-52 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS09140 eb5d28e2802cfe3aaa9d98bd88e1bcc0 146 Pfam PF08786 Domain of unknown function (DUF1795) 7 137 4.2E-24 T 14-09-2016 IPR014894 Protein DcrB PAJ_RS09140 eb5d28e2802cfe3aaa9d98bd88e1bcc0 146 SUPERFAMILY SSF55724 1 141 6.28E-27 T 14-09-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich PAJ_RS09140 eb5d28e2802cfe3aaa9d98bd88e1bcc0 146 Gene3D G3DSA:3.40.1000.10 1 144 1.2E-36 T 14-09-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich PAJ_RS15805 0be876d4988552b0e083724440dcaf9b 123 PANTHER PTHR11761 1 123 3.3E-79 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PAJ_RS15805 0be876d4988552b0e083724440dcaf9b 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 4.8E-55 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PAJ_RS15805 0be876d4988552b0e083724440dcaf9b 123 SMART SM01374 1 123 6.6E-87 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PAJ_RS15805 0be876d4988552b0e083724440dcaf9b 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 1.1E-59 T 14-09-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 PAJ_RS15805 0be876d4988552b0e083724440dcaf9b 123 Gene3D G3DSA:2.40.150.20 1 123 4.9E-56 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PAJ_RS15805 0be876d4988552b0e083724440dcaf9b 123 SUPERFAMILY SSF50193 2 122 1.57E-51 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PAJ_RS15805 0be876d4988552b0e083724440dcaf9b 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 14-09-2016 IPR019972 Ribosomal protein L14P, conserved site PAJ_RS15805 0be876d4988552b0e083724440dcaf9b 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 28.078 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PAJ_RS10625 6c39ef2ff610fcbdde41275dc4ada7fd 225 PANTHER PTHR11995 2 221 3.1E-138 T 14-09-2016 PAJ_RS10625 6c39ef2ff610fcbdde41275dc4ada7fd 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 47 183 1.5E-68 T 14-09-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 PAJ_RS10625 6c39ef2ff610fcbdde41275dc4ada7fd 225 PANTHER PTHR11995:SF14 2 221 3.1E-138 T 14-09-2016 PAJ_RS10625 6c39ef2ff610fcbdde41275dc4ada7fd 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 28 182 41.824 T 14-09-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 PAJ_RS10625 6c39ef2ff610fcbdde41275dc4ada7fd 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 149 165 - T 14-09-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 PAJ_RS10625 6c39ef2ff610fcbdde41275dc4ada7fd 225 Gene3D G3DSA:3.40.50.700 52 179 2.4E-30 T 14-09-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 PAJ_RS10625 6c39ef2ff610fcbdde41275dc4ada7fd 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 69 175 4.5E-21 T 14-09-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 PAJ_RS10625 6c39ef2ff610fcbdde41275dc4ada7fd 225 SUPERFAMILY SSF56770 44 190 2.88E-63 T 14-09-2016 PAJ_RS09035 897c27923295cd2fcdd4ec6ab2b652b9 85 SMART SM00966 7 52 4.9E-4 T 14-09-2016 IPR007159 SpoVT-AbrB domain GO:0003677 PAJ_RS09035 897c27923295cd2fcdd4ec6ab2b652b9 85 SUPERFAMILY SSF89447 2 75 1.17E-14 T 14-09-2016 PAJ_RS09035 897c27923295cd2fcdd4ec6ab2b652b9 85 Gene3D G3DSA:2.10.260.10 1 84 3.2E-26 T 14-09-2016 PAJ_RS12840 bb46f5f6e28db139b2ff81f6095ac669 160 Gene3D G3DSA:3.30.1330.50 1 157 4.5E-72 T 14-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS12840 bb46f5f6e28db139b2ff81f6095ac669 160 Pfam PF02542 YgbB family 1 154 5.0E-65 T 14-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS12840 bb46f5f6e28db139b2ff81f6095ac669 160 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 156 4.3E-70 T 14-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS12840 bb46f5f6e28db139b2ff81f6095ac669 160 PANTHER PTHR32125 1 158 1.5E-62 T 14-09-2016 PAJ_RS12840 bb46f5f6e28db139b2ff81f6095ac669 160 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 14-09-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS12840 bb46f5f6e28db139b2ff81f6095ac669 160 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 36.228 T 14-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS12840 bb46f5f6e28db139b2ff81f6095ac669 160 SUPERFAMILY SSF69765 1 157 6.15E-66 T 14-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PAJ_RS01160 48b272a3e2a6265c0c18dedd7b52e33a 417 Gene3D G3DSA:3.40.50.1820 348 413 9.2E-22 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS01160 48b272a3e2a6265c0c18dedd7b52e33a 417 Gene3D G3DSA:3.40.50.1820 162 303 9.2E-22 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS01160 48b272a3e2a6265c0c18dedd7b52e33a 417 SUPERFAMILY SSF53474 45 415 3.27E-49 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS01160 48b272a3e2a6265c0c18dedd7b52e33a 417 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 3 415 3.6E-180 T 14-09-2016 IPR010520 UPF0255 family PAJ_RS01160 48b272a3e2a6265c0c18dedd7b52e33a 417 Hamap MF_01063 Esterase FrsA [frsA]. 1 417 58.226 T 14-09-2016 IPR010520 UPF0255 family PAJ_RS11570 89f4a27e4f4000f5ee29e65695e09753 155 Gene3D G3DSA:3.40.30.10 2 154 2.6E-50 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS11570 89f4a27e4f4000f5ee29e65695e09753 155 PIRSF PIRSF000239 1 154 2.2E-17 T 14-09-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 PAJ_RS11570 89f4a27e4f4000f5ee29e65695e09753 155 SUPERFAMILY SSF52833 3 154 1.19E-48 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS11570 89f4a27e4f4000f5ee29e65695e09753 155 PANTHER PTHR10681 1 154 3.0E-49 T 14-09-2016 PAJ_RS11570 89f4a27e4f4000f5ee29e65695e09753 155 Pfam PF00578 AhpC/TSA family 7 134 7.6E-39 T 14-09-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 PAJ_RS20130 cb67296f936ef7bba5bb525f29f40161 251 PANTHER PTHR37947 4 247 1.1E-36 T 14-09-2016 PAJ_RS20130 cb67296f936ef7bba5bb525f29f40161 251 PIRSF PIRSF034405 1 251 2.8E-100 T 14-09-2016 IPR017027 Uncharacterised conserved protein UCP034405 PAJ_RS20130 cb67296f936ef7bba5bb525f29f40161 251 SUPERFAMILY SSF52317 4 248 5.95E-62 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS20130 cb67296f936ef7bba5bb525f29f40161 251 Pfam PF07090 Putative glutamine amidotransferase 4 248 1.4E-110 T 14-09-2016 IPR010768 Putative glutamine amidotransferase PAJ_RS20130 cb67296f936ef7bba5bb525f29f40161 251 Gene3D G3DSA:3.40.50.880 2 248 6.5E-87 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS07265 b1b83c81c6bcb6da06769a475c8a438c 181 PANTHER PTHR30529:SF4 1 178 1.0E-73 T 14-09-2016 PAJ_RS07265 b1b83c81c6bcb6da06769a475c8a438c 181 PANTHER PTHR30529 1 178 1.0E-73 T 14-09-2016 PAJ_RS07265 b1b83c81c6bcb6da06769a475c8a438c 181 SUPERFAMILY SSF81342 5 179 4.79E-31 T 14-09-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PAJ_RS07265 b1b83c81c6bcb6da06769a475c8a438c 181 Pfam PF01292 Prokaryotic cytochrome b561 6 175 1.9E-22 T 14-09-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 SUPERFAMILY SSF118215 29 443 5.75E-98 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 PANTHER PTHR11958 26 459 3.4E-260 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 Pfam PF00375 Sodium:dicarboxylate symporter family 29 443 2.1E-103 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 PRINTS PR00173 Glutamate-aspartate symporter signature 182 204 2.3E-24 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 PRINTS PR00173 Glutamate-aspartate symporter signature 370 389 2.3E-24 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 2.3E-24 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 2.3E-24 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 2.3E-24 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 PRINTS PR00173 Glutamate-aspartate symporter signature 397 417 2.3E-24 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 Gene3D G3DSA:1.10.3860.10 26 449 1.5E-101 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PAJ_RS05725 9aa50e4ceeacbaf463430f0fed585e30 463 PANTHER PTHR11958:SF5 26 459 3.4E-260 T 14-09-2016 PAJ_RS06890 904f2fd8c5c0b367954f6651a5106fa6 409 Pfam PF07690 Major Facilitator Superfamily 242 406 7.2E-12 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS06890 904f2fd8c5c0b367954f6651a5106fa6 409 Pfam PF07690 Major Facilitator Superfamily 33 216 2.3E-21 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS06890 904f2fd8c5c0b367954f6651a5106fa6 409 SUPERFAMILY SSF103473 17 402 2.75E-52 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS06890 904f2fd8c5c0b367954f6651a5106fa6 409 Gene3D G3DSA:1.20.1250.20 246 402 3.0E-16 T 14-09-2016 PAJ_RS06890 904f2fd8c5c0b367954f6651a5106fa6 409 Gene3D G3DSA:1.20.1250.20 30 209 1.2E-18 T 14-09-2016 PAJ_RS06890 904f2fd8c5c0b367954f6651a5106fa6 409 PANTHER PTHR23505:SF8 1 407 2.1E-122 T 14-09-2016 PAJ_RS06890 904f2fd8c5c0b367954f6651a5106fa6 409 PANTHER PTHR23505 1 407 2.1E-122 T 14-09-2016 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 175 4.2E-17 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 9.2E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 9.2E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 20 9.2E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 9.2E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 9.2E-54 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 512 4.3E-59 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 PANTHER PTHR32089 145 514 6.1E-115 T 14-09-2016 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 SUPERFAMILY SSF58104 234 514 5.23E-66 T 14-09-2016 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 Gene3D G3DSA:1.10.287.950 280 485 1.9E-55 T 14-09-2016 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 SMART SM00283 266 513 2.7E-77 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 PANTHER PTHR32089:SF48 145 514 6.1E-115 T 14-09-2016 PAJ_RS08255 d8414bc935fb4041727e09d90b2195fa 514 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 291 313 - T 14-09-2016 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site PAJ_RS02785 cdaf59754b82f14700047f9fcc3822c5 431 Gene3D G3DSA:3.30.1150.10 332 431 1.2E-43 T 14-09-2016 PAJ_RS02785 cdaf59754b82f14700047f9fcc3822c5 431 SUPERFAMILY SSF74653 343 431 4.71E-20 T 14-09-2016 PAJ_RS02785 cdaf59754b82f14700047f9fcc3822c5 431 Pfam PF06519 TolA C-terminal 334 428 5.0E-37 T 14-09-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 PAJ_RS02785 cdaf59754b82f14700047f9fcc3822c5 431 TIGRFAM TIGR02794 tolA_full: protein TolA 196 430 1.7E-49 T 14-09-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 PAJ_RS02785 cdaf59754b82f14700047f9fcc3822c5 431 TIGRFAM TIGR02794 tolA_full: protein TolA 12 222 9.7E-43 T 14-09-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 PAJ_RS00225 7e1fbd51fe8f1b291f41090e727b3506 251 PANTHER PTHR21089:SF5 17 250 9.7E-85 T 14-09-2016 PAJ_RS00225 7e1fbd51fe8f1b291f41090e727b3506 251 Pfam PF01487 Type I 3-dehydroquinase 20 246 1.3E-73 T 14-09-2016 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS00225 7e1fbd51fe8f1b291f41090e727b3506 251 TIGRFAM TIGR01093 aroD: 3-dehydroquinate dehydratase, type I 19 246 8.7E-77 T 14-09-2016 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS00225 7e1fbd51fe8f1b291f41090e727b3506 251 Gene3D G3DSA:3.20.20.70 4 250 4.4E-91 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS00225 7e1fbd51fe8f1b291f41090e727b3506 251 ProSitePatterns PS01028 Dehydroquinase class I active site. 115 145 - T 14-09-2016 IPR018508 3-dehydroquinate dehydratase, active site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS00225 7e1fbd51fe8f1b291f41090e727b3506 251 SUPERFAMILY SSF51569 4 250 1.95E-77 T 14-09-2016 PAJ_RS00225 7e1fbd51fe8f1b291f41090e727b3506 251 PANTHER PTHR21089 17 250 9.7E-85 T 14-09-2016 PAJ_RS00225 7e1fbd51fe8f1b291f41090e727b3506 251 Hamap MF_00214 3-dehydroquinate dehydratase [aroD]. 18 250 38.515 T 14-09-2016 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 PANTHER PTHR24220 4 385 2.7E-204 T 14-09-2016 PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 Gene3D G3DSA:3.40.50.300 2 233 1.8E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 PANTHER PTHR24220:SF392 4 385 2.7E-204 T 14-09-2016 PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 Gene3D G3DSA:3.40.50.300 250 498 2.7E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 SUPERFAMILY SSF52540 256 485 4.3E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 Pfam PF00005 ABC transporter 275 431 1.9E-19 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 Pfam PF00005 ABC transporter 18 169 6.2E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 SMART SM00382 284 480 7.0E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 SMART SM00382 27 217 2.0E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 TIGRFAM TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein 2 500 1.9E-265 T 14-09-2016 IPR013455 ABC transporter, D-xylose, ATP-binding protein GO:0005524|GO:0015614|GO:0015753|GO:0016020 PAJ_RS17725 69d288604788ab6d41a4ef88fe8ef029 506 SUPERFAMILY SSF52540 2 229 1.16E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08815 5c99e59e66a3ad19d3fa2ba1fb722c26 309 PANTHER PTHR30244 2 309 2.2E-118 T 14-09-2016 PAJ_RS08815 5c99e59e66a3ad19d3fa2ba1fb722c26 309 PANTHER PTHR30244:SF1 2 309 2.2E-118 T 14-09-2016 PAJ_RS08815 5c99e59e66a3ad19d3fa2ba1fb722c26 309 SUPERFAMILY SSF64518 1 309 5.89E-94 T 14-09-2016 PAJ_RS08815 5c99e59e66a3ad19d3fa2ba1fb722c26 309 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 138 2.2E-41 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08815 5c99e59e66a3ad19d3fa2ba1fb722c26 309 PRINTS PR00207 Flagellin signature 75 94 7.8E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08815 5c99e59e66a3ad19d3fa2ba1fb722c26 309 PRINTS PR00207 Flagellin signature 110 133 7.8E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08815 5c99e59e66a3ad19d3fa2ba1fb722c26 309 PRINTS PR00207 Flagellin signature 36 53 7.8E-30 T 14-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PAJ_RS08815 5c99e59e66a3ad19d3fa2ba1fb722c26 309 Pfam PF00700 Bacterial flagellin C-terminal helical region 224 308 3.1E-30 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08815 5c99e59e66a3ad19d3fa2ba1fb722c26 309 Gene3D G3DSA:1.20.1330.10 211 265 2.9E-55 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08815 5c99e59e66a3ad19d3fa2ba1fb722c26 309 Gene3D G3DSA:1.20.1330.10 53 172 2.9E-55 T 14-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PAJ_RS08035 736b75496bc1b40e4d0c50fb662990f4 89 PANTHER PTHR33404 1 89 8.2E-37 T 14-09-2016 PAJ_RS08035 736b75496bc1b40e4d0c50fb662990f4 89 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 5.9E-36 T 14-09-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 PAJ_RS08035 736b75496bc1b40e4d0c50fb662990f4 89 SUPERFAMILY SSF55229 32 85 1.83E-18 T 14-09-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 PAJ_RS08035 736b75496bc1b40e4d0c50fb662990f4 89 Gene3D G3DSA:3.30.1070.10 31 85 2.6E-25 T 14-09-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 PAJ_RS08035 736b75496bc1b40e4d0c50fb662990f4 89 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 86 19.499 T 14-09-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 PAJ_RS08035 736b75496bc1b40e4d0c50fb662990f4 89 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 3.5E-25 T 14-09-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 PAJ_RS14025 3dba0933f009da0f3b8c04f07dc61225 126 TIGRFAM TIGR00494 crcB: protein CrcB 8 121 1.1E-31 T 14-09-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 PAJ_RS14025 3dba0933f009da0f3b8c04f07dc61225 126 PANTHER PTHR28259 6 122 7.4E-36 T 14-09-2016 PAJ_RS14025 3dba0933f009da0f3b8c04f07dc61225 126 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 8 118 3.5E-24 T 14-09-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 PAJ_RS14025 3dba0933f009da0f3b8c04f07dc61225 126 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 6 123 17.907 T 14-09-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 PAJ_RS14255 0b2734661b624a9a6239a38f960728e0 200 PANTHER PTHR36448:SF2 15 194 6.6E-52 T 14-09-2016 PAJ_RS14255 0b2734661b624a9a6239a38f960728e0 200 PIRSF PIRSF019307 20 192 3.1E-54 T 14-09-2016 IPR014500 Uncharacterised conserved protein UCP019307, cupin-type PAJ_RS14255 0b2734661b624a9a6239a38f960728e0 200 PANTHER PTHR36448 15 194 6.6E-52 T 14-09-2016 PAJ_RS14255 0b2734661b624a9a6239a38f960728e0 200 Pfam PF07883 Cupin domain 85 137 5.2E-8 T 14-09-2016 IPR013096 Cupin 2, conserved barrel PAJ_RS14255 0b2734661b624a9a6239a38f960728e0 200 SUPERFAMILY SSF51182 57 148 3.28E-19 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS14255 0b2734661b624a9a6239a38f960728e0 200 Gene3D G3DSA:2.60.120.10 49 155 1.4E-19 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS09980 665ff8d9c57517c67946f174b284d98c 193 PANTHER PTHR11241 1 58 2.1E-67 T 14-09-2016 PAJ_RS09980 665ff8d9c57517c67946f174b284d98c 193 Pfam PF00692 dUTPase 79 187 1.3E-10 T 14-09-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 PAJ_RS09980 665ff8d9c57517c67946f174b284d98c 193 PANTHER PTHR11241 77 192 2.1E-67 T 14-09-2016 PAJ_RS09980 665ff8d9c57517c67946f174b284d98c 193 SUPERFAMILY SSF51283 1 193 1.01E-59 T 14-09-2016 IPR029054 dUTPase-like PAJ_RS09980 665ff8d9c57517c67946f174b284d98c 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 1.4E-68 T 14-09-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 PAJ_RS09980 665ff8d9c57517c67946f174b284d98c 193 PANTHER PTHR11241:SF1 77 192 2.1E-67 T 14-09-2016 PAJ_RS09980 665ff8d9c57517c67946f174b284d98c 193 PANTHER PTHR11241:SF1 1 58 2.1E-67 T 14-09-2016 PAJ_RS09980 665ff8d9c57517c67946f174b284d98c 193 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 190 34.519 T 14-09-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 PAJ_RS09980 665ff8d9c57517c67946f174b284d98c 193 Gene3D G3DSA:2.70.40.10 1 192 4.8E-60 T 14-09-2016 IPR029054 dUTPase-like PAJ_RS03850 d5085104a888a54e50e0bcbe0d3f91b5 147 PIRSF PIRSF028777 1 139 8.9E-53 T 14-09-2016 IPR031308 Uncharacterised conserved protein UCP028777 PAJ_RS03850 d5085104a888a54e50e0bcbe0d3f91b5 147 PANTHER PTHR31503 1 147 5.0E-57 T 14-09-2016 PAJ_RS03850 d5085104a888a54e50e0bcbe0d3f91b5 147 Pfam PF03733 Inner membrane component domain 77 127 4.5E-17 T 14-09-2016 IPR005185 Inner membrane component domain PAJ_RS03850 d5085104a888a54e50e0bcbe0d3f91b5 147 Pfam PF03733 Inner membrane component domain 4 53 4.7E-10 T 14-09-2016 IPR005185 Inner membrane component domain PAJ_RS03005 1f06b3761bf6b61e98721522f9046f01 150 Pfam PF02391 MoaE protein 11 120 4.1E-37 T 14-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS03005 1f06b3761bf6b61e98721522f9046f01 150 Gene3D G3DSA:3.90.1170.40 2 149 4.9E-58 T 14-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS03005 1f06b3761bf6b61e98721522f9046f01 150 PANTHER PTHR23404:SF2 16 150 5.1E-48 T 14-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS03005 1f06b3761bf6b61e98721522f9046f01 150 PANTHER PTHR23404 16 150 5.1E-48 T 14-09-2016 PAJ_RS03005 1f06b3761bf6b61e98721522f9046f01 150 SUPERFAMILY SSF54690 5 149 6.02E-55 T 14-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 Gene3D G3DSA:1.10.10.10 5 76 1.0E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 SMART SM00895 96 225 1.5E-18 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 PANTHER PTHR11751:SF389 1 112 2.2E-41 T 14-09-2016 PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 Pfam PF07729 FCD domain 98 224 1.5E-17 T 14-09-2016 IPR011711 GntR, C-terminal PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 Gene3D G3DSA:1.20.120.530 94 233 6.8E-30 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 SMART SM00345 13 72 5.2E-24 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 SUPERFAMILY SSF46785 4 76 2.27E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 7.2E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 7.2E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 PANTHER PTHR11751 1 112 2.2E-41 T 14-09-2016 PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 8.5E-23 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS18815 987ca34d54cefb0380a53376c13f50ed 256 SUPERFAMILY SSF48008 95 233 3.4E-26 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PAJ_RS16635 e2c0ee1d360b54859e6b14ddbe9962d6 248 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 18 245 3.8E-34 T 14-09-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 PAJ_RS16635 e2c0ee1d360b54859e6b14ddbe9962d6 248 PANTHER PTHR23344 5 247 4.1E-52 T 14-09-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 PAJ_RS16635 e2c0ee1d360b54859e6b14ddbe9962d6 248 Gene3D G3DSA:3.20.20.190 12 247 2.1E-57 T 14-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 PAJ_RS16635 e2c0ee1d360b54859e6b14ddbe9962d6 248 SUPERFAMILY SSF51695 14 247 4.45E-58 T 14-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 PAJ_RS06835 178c2a1d59173c00c0af9f4ebd7de4b5 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 289 2.6E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS06835 178c2a1d59173c00c0af9f4ebd7de4b5 296 PANTHER PTHR32243:SF4 3 296 2.8E-141 T 14-09-2016 PAJ_RS06835 178c2a1d59173c00c0af9f4ebd7de4b5 296 PANTHER PTHR32243 3 296 2.8E-141 T 14-09-2016 PAJ_RS06835 178c2a1d59173c00c0af9f4ebd7de4b5 296 SUPERFAMILY SSF161098 8 296 1.4E-68 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS06835 178c2a1d59173c00c0af9f4ebd7de4b5 296 Gene3D G3DSA:1.10.3720.10 5 283 8.9E-63 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS01915 2ad564082920b68bc2a652df28a3b1bb 143 PANTHER PTHR42641:SF2 1 132 4.9E-63 T 14-09-2016 PAJ_RS01915 2ad564082920b68bc2a652df28a3b1bb 143 Pfam PF05232 Chlorhexidine efflux transporter 73 133 1.9E-21 T 14-09-2016 IPR007896 Chlorhexidine efflux transporter PAJ_RS01915 2ad564082920b68bc2a652df28a3b1bb 143 Pfam PF05232 Chlorhexidine efflux transporter 4 66 1.5E-26 T 14-09-2016 IPR007896 Chlorhexidine efflux transporter PAJ_RS01915 2ad564082920b68bc2a652df28a3b1bb 143 PANTHER PTHR42641 1 132 4.9E-63 T 14-09-2016 PAJ_RS19700 b8016b79b121880f241ef9447e280ac8 161 PIRSF PIRSF005276 3 161 1.9E-60 T 14-09-2016 IPR007481 Stringent starvation protein B PAJ_RS19700 b8016b79b121880f241ef9447e280ac8 161 PANTHER PTHR37486 2 161 4.0E-83 T 14-09-2016 PAJ_RS19700 b8016b79b121880f241ef9447e280ac8 161 SUPERFAMILY SSF101738 3 113 2.75E-48 T 14-09-2016 IPR007481 Stringent starvation protein B PAJ_RS19700 b8016b79b121880f241ef9447e280ac8 161 Pfam PF04386 Stringent starvation protein B 9 161 1.4E-44 T 14-09-2016 IPR007481 Stringent starvation protein B PAJ_RS19700 b8016b79b121880f241ef9447e280ac8 161 Gene3D G3DSA:2.30.30.220 3 111 6.8E-52 T 14-09-2016 IPR007481 Stringent starvation protein B PAJ_RS19700 b8016b79b121880f241ef9447e280ac8 161 PANTHER PTHR37486:SF1 2 161 4.0E-83 T 14-09-2016 PAJ_RS14745 5a2e4296265c301eec4ee18c487f4a62 194 Pfam PF04717 Type VI secretion system, phage-baseplate injector 7 117 2.6E-46 T 14-09-2016 IPR006531 Gp5 N-terminal PAJ_RS14745 5a2e4296265c301eec4ee18c487f4a62 194 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 9 191 3.9E-59 T 14-09-2016 IPR013046 Phage baseplate assembly protein V/Gp45 PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 Pfam PF06964 Alpha-L-arabinofuranosidase C-terminal domain 289 494 3.6E-36 T 14-09-2016 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 PANTHER PTHR31776:SF1 15 243 7.9E-172 T 14-09-2016 PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 SUPERFAMILY SSF51011 365 499 7.55E-25 T 14-09-2016 PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 SUPERFAMILY SSF51445 15 384 3.5E-99 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 PANTHER PTHR31776 15 243 7.9E-172 T 14-09-2016 PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 SMART SM00813 289 494 6.6E-54 T 14-09-2016 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 PANTHER PTHR31776:SF1 319 503 7.9E-172 T 14-09-2016 PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 PANTHER PTHR31776:SF1 263 297 7.9E-172 T 14-09-2016 PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 Gene3D G3DSA:3.20.20.80 37 303 1.1E-28 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 PANTHER PTHR31776 263 297 7.9E-172 T 14-09-2016 PAJ_RS10430 79f06269054488eaa58610da2a26b08b 504 PANTHER PTHR31776 319 503 7.9E-172 T 14-09-2016 PAJ_RS13770 d70759bf7a6bfd57986ccb24f9877eb2 424 SUPERFAMILY SSF103473 18 421 1.31E-61 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS13770 d70759bf7a6bfd57986ccb24f9877eb2 424 Pfam PF00083 Sugar (and other) transporter 226 411 3.4E-10 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS13770 d70759bf7a6bfd57986ccb24f9877eb2 424 Pfam PF00083 Sugar (and other) transporter 22 211 3.1E-18 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS13770 d70759bf7a6bfd57986ccb24f9877eb2 424 Gene3D G3DSA:1.20.1250.20 236 418 3.1E-17 T 14-09-2016 PAJ_RS13770 d70759bf7a6bfd57986ccb24f9877eb2 424 Gene3D G3DSA:1.20.1250.20 18 217 3.6E-23 T 14-09-2016 PAJ_RS13770 d70759bf7a6bfd57986ccb24f9877eb2 424 PANTHER PTHR23508 19 417 3.6E-110 T 14-09-2016 PAJ_RS01860 17b05f450192a61c3433cb8ecd602657 176 Pfam PF07445 Primosomal replication protein priC 11 167 1.3E-37 T 14-09-2016 IPR010890 Primosomal replication PriB/PriC PAJ_RS21585 c51ccafc23f816fd12ecdce6cc9b5125 165 PANTHER PTHR18934 1 165 3.4E-48 T 14-09-2016 PAJ_RS21585 c51ccafc23f816fd12ecdce6cc9b5125 165 SUPERFAMILY SSF52540 10 162 3.97E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS21585 c51ccafc23f816fd12ecdce6cc9b5125 165 Gene3D G3DSA:3.40.50.300 4 76 3.9E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 14-09-2016 IPR025505 FHIPEP conserved site PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 PANTHER PTHR30161 2 696 0.0 T 14-09-2016 PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 PANTHER PTHR30161:SF1 2 696 0.0 T 14-09-2016 PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 693 9.0E-280 T 14-09-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 PIRSF PIRSF005419 13 697 3.5E-244 T 14-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 1.1E-56 T 14-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 1.1E-56 T 14-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 1.1E-56 T 14-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 1.1E-56 T 14-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 1.1E-56 T 14-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 1.1E-56 T 14-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PAJ_RS08475 30e5a8088b5211b8ff9762caf50e760f 697 Pfam PF00771 FHIPEP family 31 685 1.5E-269 T 14-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PAJ_RS14985 106b98bee9d28c612f02beb79ca0a023 471 Hamap MF_00675 Uronate isomerase [uxaC]. 2 467 48.68 T 14-09-2016 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248|UniPathway: UPA00246 PAJ_RS14985 106b98bee9d28c612f02beb79ca0a023 471 SUPERFAMILY SSF51556 3 466 9.86E-179 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS14985 106b98bee9d28c612f02beb79ca0a023 471 Gene3D G3DSA:3.20.20.140 139 466 1.5E-159 T 14-09-2016 PAJ_RS14985 106b98bee9d28c612f02beb79ca0a023 471 Gene3D G3DSA:3.20.20.140 3 44 1.5E-159 T 14-09-2016 PAJ_RS14985 106b98bee9d28c612f02beb79ca0a023 471 Pfam PF02614 Glucuronate isomerase 1 465 3.9E-224 T 14-09-2016 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248|UniPathway: UPA00246 PAJ_RS14985 106b98bee9d28c612f02beb79ca0a023 471 PANTHER PTHR30068 2 469 9.8E-287 T 14-09-2016 PAJ_RS14985 106b98bee9d28c612f02beb79ca0a023 471 Gene3D G3DSA:1.10.2020.10 46 137 3.5E-43 T 14-09-2016 IPR023177 Uronate isomerase, domain 2 GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248|UniPathway: UPA00246 PAJ_RS14985 106b98bee9d28c612f02beb79ca0a023 471 PANTHER PTHR30068:SF4 2 469 9.8E-287 T 14-09-2016 PAJ_RS03965 fd62a59d24de20f433635006afff89d3 203 Gene3D G3DSA:3.40.630.30 1 175 9.4E-28 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS03965 fd62a59d24de20f433635006afff89d3 203 PRINTS PR01549 Autoinducer synthesis protein signature 153 170 3.3E-8 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS03965 fd62a59d24de20f433635006afff89d3 203 PRINTS PR01549 Autoinducer synthesis protein signature 41 63 3.3E-8 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS03965 fd62a59d24de20f433635006afff89d3 203 PRINTS PR01549 Autoinducer synthesis protein signature 18 37 3.3E-8 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS03965 fd62a59d24de20f433635006afff89d3 203 PRINTS PR01549 Autoinducer synthesis protein signature 65 83 3.3E-8 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS03965 fd62a59d24de20f433635006afff89d3 203 PANTHER PTHR39322 1 180 1.0E-15 T 14-09-2016 PAJ_RS03965 fd62a59d24de20f433635006afff89d3 203 Pfam PF00765 Autoinducer synthase 10 99 6.9E-5 T 14-09-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 PAJ_RS03965 fd62a59d24de20f433635006afff89d3 203 SUPERFAMILY SSF55729 11 178 7.42E-17 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS07240 b36a8666b4c017b6ca4e724cff8414f2 232 Gene3D G3DSA:3.40.50.300 2 211 9.4E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07240 b36a8666b4c017b6ca4e724cff8414f2 232 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 171 1.9E-37 T 14-09-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS07240 b36a8666b4c017b6ca4e724cff8414f2 232 SUPERFAMILY SSF52540 2 208 1.59E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07240 b36a8666b4c017b6ca4e724cff8414f2 232 PANTHER PTHR21343:SF12 2 220 3.8E-112 T 14-09-2016 PAJ_RS07240 b36a8666b4c017b6ca4e724cff8414f2 232 PIRSF PIRSF006755 1 227 9.5E-61 T 14-09-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS07240 b36a8666b4c017b6ca4e724cff8414f2 232 Pfam PF13500 AAA domain 2 206 8.7E-26 T 14-09-2016 PAJ_RS07240 b36a8666b4c017b6ca4e724cff8414f2 232 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 213 23.264 T 14-09-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 PAJ_RS07240 b36a8666b4c017b6ca4e724cff8414f2 232 PANTHER PTHR21343 2 220 3.8E-112 T 14-09-2016 PAJ_RS00420 d5d2bab68c3599fe79b4ed34245b3004 284 Pfam PF17113 Regulatory signalling modulator protein AmpE 1 284 8.9E-156 T 14-09-2016 IPR031347 Protein AmpE PAJ_RS00420 d5d2bab68c3599fe79b4ed34245b3004 284 PANTHER PTHR38684 2 284 2.1E-88 T 14-09-2016 PAJ_RS12805 24a91f50c0fb0f3b9fe3b594619c9c78 158 Gene3D G3DSA:1.10.260.40 5 68 6.7E-17 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS12805 24a91f50c0fb0f3b9fe3b594619c9c78 158 PANTHER PTHR10245 5 91 1.1E-13 T 14-09-2016 PAJ_RS12805 24a91f50c0fb0f3b9fe3b594619c9c78 158 Pfam PF13239 2TM domain 79 154 3.8E-14 T 14-09-2016 IPR025698 2TM domain PAJ_RS12805 24a91f50c0fb0f3b9fe3b594619c9c78 158 Pfam PF01381 Helix-turn-helix 7 60 4.5E-16 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS12805 24a91f50c0fb0f3b9fe3b594619c9c78 158 SMART SM00530 6 60 1.8E-14 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS12805 24a91f50c0fb0f3b9fe3b594619c9c78 158 SUPERFAMILY SSF47413 5 63 2.09E-14 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS07605 b4b3ec3c7f2ab6eb0fe4f356f88ac880 389 PANTHER PTHR23083 8 348 7.6E-40 T 14-09-2016 PAJ_RS07605 b4b3ec3c7f2ab6eb0fe4f356f88ac880 389 SUPERFAMILY SSF81901 40 246 1.23E-13 T 14-09-2016 PAJ_RS07605 b4b3ec3c7f2ab6eb0fe4f356f88ac880 389 Pfam PF13181 Tetratricopeptide repeat 215 245 0.025 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS07605 b4b3ec3c7f2ab6eb0fe4f356f88ac880 389 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 387 36.143 T 14-09-2016 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 PAJ_RS07605 b4b3ec3c7f2ab6eb0fe4f356f88ac880 389 Gene3D G3DSA:1.25.40.10 39 314 5.8E-25 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS07605 b4b3ec3c7f2ab6eb0fe4f356f88ac880 389 SMART SM00028 214 247 0.022 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS07605 b4b3ec3c7f2ab6eb0fe4f356f88ac880 389 SMART SM00028 180 213 82.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS07605 b4b3ec3c7f2ab6eb0fe4f356f88ac880 389 SMART SM00028 107 140 390.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS07605 b4b3ec3c7f2ab6eb0fe4f356f88ac880 389 SMART SM00028 69 102 56.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS11295 96000f7a95db07f56ca7845507e29439 335 PANTHER PTHR18640:SF9 3 332 1.4E-116 T 14-09-2016 PAJ_RS11295 96000f7a95db07f56ca7845507e29439 335 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 8 317 4.2E-99 T 14-09-2016 IPR016833 Putative sodium bile acid cotransporter PAJ_RS11295 96000f7a95db07f56ca7845507e29439 335 PIRSF PIRSF026166 1 334 3.3E-129 T 14-09-2016 IPR016833 Putative sodium bile acid cotransporter PAJ_RS11295 96000f7a95db07f56ca7845507e29439 335 PANTHER PTHR18640 3 332 1.4E-116 T 14-09-2016 IPR016833 Putative sodium bile acid cotransporter PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 Gene3D G3DSA:3.40.50.1980 30 118 2.4E-31 T 14-09-2016 PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 PANTHER PTHR30532 30 289 6.8E-70 T 14-09-2016 PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 SUPERFAMILY SSF53807 30 289 1.88E-57 T 14-09-2016 PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 PANTHER PTHR30532:SF1 30 289 6.8E-70 T 14-09-2016 PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 270 283 1.7E-42 T 14-09-2016 IPR008091 Ferrichrome-binding periplasmic protein PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 181 196 1.7E-42 T 14-09-2016 IPR008091 Ferrichrome-binding periplasmic protein PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 51 69 1.7E-42 T 14-09-2016 IPR008091 Ferrichrome-binding periplasmic protein PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 205 223 1.7E-42 T 14-09-2016 IPR008091 Ferrichrome-binding periplasmic protein PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 82 97 1.7E-42 T 14-09-2016 IPR008091 Ferrichrome-binding periplasmic protein PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 233 250 1.7E-42 T 14-09-2016 IPR008091 Ferrichrome-binding periplasmic protein PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 Pfam PF01497 Periplasmic binding protein 34 266 2.0E-33 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 PAJ_RS00615 cf20ce53c3e5e82f92573e2ef8c10a48 292 Gene3D G3DSA:3.40.50.1980 125 291 9.7E-59 T 14-09-2016 PAJ_RS20405 cdf83077521790248d94c4272011c1bf 240 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 23 238 8.1E-65 T 14-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal PAJ_RS01520 0a429f974c258a885141275449d6f5ca 439 PANTHER PTHR30588 2 439 1.5E-220 T 14-09-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 PAJ_RS01520 0a429f974c258a885141275449d6f5ca 439 Pfam PF05525 Branched-chain amino acid transport protein 8 429 3.8E-153 T 14-09-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 PAJ_RS01520 0a429f974c258a885141275449d6f5ca 439 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 415 1.6E-155 T 14-09-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 PAJ_RS01520 0a429f974c258a885141275449d6f5ca 439 PANTHER PTHR30588:SF0 2 439 1.5E-220 T 14-09-2016 PAJ_RS06535 95e8207a1f72f5cc32831f53a2debcf0 694 Pfam PF00593 TonB dependent receptor 442 689 2.1E-35 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS06535 95e8207a1f72f5cc32831f53a2debcf0 694 PANTHER PTHR32552 17 691 0.0 T 14-09-2016 PAJ_RS06535 95e8207a1f72f5cc32831f53a2debcf0 694 Gene3D G3DSA:2.40.170.20 144 690 1.3E-106 T 14-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PAJ_RS06535 95e8207a1f72f5cc32831f53a2debcf0 694 Pfam PF07715 TonB-dependent Receptor Plug Domain 33 143 1.8E-22 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS06535 95e8207a1f72f5cc32831f53a2debcf0 694 SUPERFAMILY SSF56935 17 691 1.76E-119 T 14-09-2016 PAJ_RS06535 95e8207a1f72f5cc32831f53a2debcf0 694 Gene3D G3DSA:2.170.130.10 19 143 1.8E-27 T 14-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PAJ_RS06535 95e8207a1f72f5cc32831f53a2debcf0 694 PANTHER PTHR32552:SF13 17 691 0.0 T 14-09-2016 PAJ_RS05175 27dcac41db7a16956deba7c1fa07f482 173 Gene3D G3DSA:3.40.630.30 3 167 6.0E-39 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05175 27dcac41db7a16956deba7c1fa07f482 173 SUPERFAMILY SSF55729 6 158 1.79E-33 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05175 27dcac41db7a16956deba7c1fa07f482 173 PANTHER PTHR13256:SF10 4 160 1.7E-29 T 14-09-2016 PAJ_RS05175 27dcac41db7a16956deba7c1fa07f482 173 Pfam PF13302 Acetyltransferase (GNAT) domain 13 155 1.3E-24 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS05175 27dcac41db7a16956deba7c1fa07f482 173 PANTHER PTHR13256 4 160 1.7E-29 T 14-09-2016 PAJ_RS08930 227aee3e7716278bf13267196f0a3b2a 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 4.5E-32 T 14-09-2016 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 PAJ_RS08930 227aee3e7716278bf13267196f0a3b2a 89 PANTHER PTHR34040:SF2 1 89 3.0E-38 T 14-09-2016 PAJ_RS08930 227aee3e7716278bf13267196f0a3b2a 89 PANTHER PTHR34040 1 89 3.0E-38 T 14-09-2016 PAJ_RS08930 227aee3e7716278bf13267196f0a3b2a 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.3E-23 T 14-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PAJ_RS08930 227aee3e7716278bf13267196f0a3b2a 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.3E-23 T 14-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PAJ_RS08930 227aee3e7716278bf13267196f0a3b2a 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.3E-23 T 14-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PAJ_RS08930 227aee3e7716278bf13267196f0a3b2a 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 9.6E-30 T 14-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PAJ_RS08930 227aee3e7716278bf13267196f0a3b2a 89 PIRSF PIRSF004669 1 89 8.4E-32 T 14-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PAJ_RS13950 8e41ccb7258635af39aee5c2b3351c41 326 PIRSF PIRSF037112 3 326 2.7E-109 T 14-09-2016 IPR017113 Antirestriction, ArdC PAJ_RS13950 8e41ccb7258635af39aee5c2b3351c41 326 Pfam PF08401 Domain of unknown function (DUF1738) 17 144 1.1E-34 T 14-09-2016 IPR013610 Domain of unknown function DUF1738 PAJ_RS02775 23811c306b59de84f8bf1fe2290b7787 228 Pfam PF01618 MotA/TolQ/ExbB proton channel family 79 207 1.9E-42 T 14-09-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PAJ_RS02775 23811c306b59de84f8bf1fe2290b7787 228 TIGRFAM TIGR02796 tolQ: protein TolQ 5 219 1.5E-93 T 14-09-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 PAJ_RS02775 23811c306b59de84f8bf1fe2290b7787 228 PANTHER PTHR30625:SF3 3 224 3.5E-78 T 14-09-2016 PAJ_RS02775 23811c306b59de84f8bf1fe2290b7787 228 PANTHER PTHR30625 3 224 3.5E-78 T 14-09-2016 PAJ_RS13055 5a54b412262231b264f7ee521099bf73 182 Hamap MF_01104 Protein Syd [syd]. 3 181 35.195 T 14-09-2016 IPR009948 Syd GO:0009898 PAJ_RS13055 5a54b412262231b264f7ee521099bf73 182 Pfam PF07348 Syd protein (SUKH-2) 7 179 2.0E-71 T 14-09-2016 IPR009948 Syd GO:0009898 PAJ_RS03625 937fe0b9dc1dd64484952da394e6147e 428 Gene3D G3DSA:3.65.10.10 239 423 3.6E-73 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PAJ_RS03625 937fe0b9dc1dd64484952da394e6147e 428 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 427 35.601 T 14-09-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS03625 937fe0b9dc1dd64484952da394e6147e 428 Gene3D G3DSA:3.65.10.10 23 238 3.4E-69 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PAJ_RS03625 937fe0b9dc1dd64484952da394e6147e 428 SUPERFAMILY SSF55205 4 424 1.4E-145 T 14-09-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 PAJ_RS03625 937fe0b9dc1dd64484952da394e6147e 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 421 3.7E-154 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PAJ_RS03625 937fe0b9dc1dd64484952da394e6147e 428 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 14-09-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS03625 937fe0b9dc1dd64484952da394e6147e 428 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 15 426 4.3E-143 T 14-09-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS03625 937fe0b9dc1dd64484952da394e6147e 428 ProSitePatterns PS00104 EPSP synthase signature 1. 91 105 - T 14-09-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS03625 937fe0b9dc1dd64484952da394e6147e 428 PANTHER PTHR21090 3 425 8.0E-212 T 14-09-2016 PAJ_RS03625 937fe0b9dc1dd64484952da394e6147e 428 PIRSF PIRSF000505 3 428 1.8E-156 T 14-09-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 PAJ_RS04935 ca8e34a2676c6ade9a1f38284b5e3878 453 SUPERFAMILY SSF89796 197 395 1.26E-56 T 14-09-2016 IPR023606 CoA-transferase family III domain PAJ_RS04935 ca8e34a2676c6ade9a1f38284b5e3878 453 Pfam PF02515 CoA-transferase family III 199 395 6.7E-45 T 14-09-2016 IPR003673 CoA-transferase family III GO:0003824 PAJ_RS04935 ca8e34a2676c6ade9a1f38284b5e3878 453 SUPERFAMILY SSF89796 52 189 8.37E-16 T 14-09-2016 IPR023606 CoA-transferase family III domain PAJ_RS04935 ca8e34a2676c6ade9a1f38284b5e3878 453 Gene3D G3DSA:3.40.50.10540 196 390 4.7E-63 T 14-09-2016 IPR023606 CoA-transferase family III domain PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 167 174 - T 14-09-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 PANTHER PTHR11404 1 205 1.6E-109 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 SUPERFAMILY SSF54719 94 203 1.7E-46 T 14-09-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.0E-27 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 PRINTS PR01703 Manganese superoxide dismutase signature 123 131 1.0E-27 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 PRINTS PR01703 Manganese superoxide dismutase signature 165 177 1.0E-27 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.0E-27 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 PRINTS PR01703 Manganese superoxide dismutase signature 72 85 1.0E-27 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 88 7.0E-35 T 14-09-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 95 200 6.8E-42 T 14-09-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 PIRSF PIRSF000349 1 205 1.6E-80 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 SUPERFAMILY SSF46609 1 89 3.01E-36 T 14-09-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PAJ_RS18055 e5d56213a9f1214d9662892248c4bec1 205 Gene3D G3DSA:1.10.287.990 20 89 2.8E-31 T 14-09-2016 PAJ_RS02605 897fde616cb37d598c5317427d1b7df0 131 Gene3D G3DSA:3.10.450.50 6 130 7.8E-39 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS02605 897fde616cb37d598c5317427d1b7df0 131 SUPERFAMILY SSF54427 9 130 1.6E-25 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS19520 84ecf018ef6fbfe2219f171cf8dc8da0 208 PANTHER PTHR10204 1 205 1.4E-58 T 14-09-2016 PAJ_RS19520 84ecf018ef6fbfe2219f171cf8dc8da0 208 SUPERFAMILY SSF52218 1 202 1.75E-44 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS19520 84ecf018ef6fbfe2219f171cf8dc8da0 208 Pfam PF02525 Flavodoxin-like fold 3 197 4.8E-40 T 14-09-2016 IPR003680 Flavodoxin-like fold PAJ_RS19520 84ecf018ef6fbfe2219f171cf8dc8da0 208 Gene3D G3DSA:3.40.50.360 1 204 1.1E-57 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS19520 84ecf018ef6fbfe2219f171cf8dc8da0 208 PANTHER PTHR10204:SF37 1 205 1.4E-58 T 14-09-2016 PAJ_RS19520 84ecf018ef6fbfe2219f171cf8dc8da0 208 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 203 28.464 T 14-09-2016 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 PAJ_RS11155 2b5c5aba1595835138e6893b4f09f333 523 PANTHER PTHR23501:SF71 15 507 5.3E-75 T 14-09-2016 PAJ_RS11155 2b5c5aba1595835138e6893b4f09f333 523 PANTHER PTHR23501 15 507 5.3E-75 T 14-09-2016 PAJ_RS11155 2b5c5aba1595835138e6893b4f09f333 523 SUPERFAMILY SSF103473 248 421 1.44E-27 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS11155 2b5c5aba1595835138e6893b4f09f333 523 SUPERFAMILY SSF103473 10 199 1.44E-27 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS11155 2b5c5aba1595835138e6893b4f09f333 523 SUPERFAMILY SSF103473 481 508 1.44E-27 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS11155 2b5c5aba1595835138e6893b4f09f333 523 Pfam PF07690 Major Facilitator Superfamily 25 411 1.8E-20 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS11155 2b5c5aba1595835138e6893b4f09f333 523 Gene3D G3DSA:1.20.1250.20 263 422 2.4E-8 T 14-09-2016 PAJ_RS11155 2b5c5aba1595835138e6893b4f09f333 523 Gene3D G3DSA:1.20.1250.20 482 507 2.4E-8 T 14-09-2016 PAJ_RS11155 2b5c5aba1595835138e6893b4f09f333 523 Gene3D G3DSA:1.20.1250.20 41 195 6.9E-10 T 14-09-2016 PAJ_RS16400 d7bc13fdd51da6ffb090711c1d944eaa 83 PANTHER PTHR33279 7 81 3.2E-45 T 14-09-2016 PAJ_RS16400 d7bc13fdd51da6ffb090711c1d944eaa 83 Gene3D G3DSA:3.30.110.40 5 80 7.9E-29 T 14-09-2016 IPR001455 TusA-like domain PAJ_RS16400 d7bc13fdd51da6ffb090711c1d944eaa 83 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 14-09-2016 IPR001455 TusA-like domain PAJ_RS16400 d7bc13fdd51da6ffb090711c1d944eaa 83 Pfam PF01206 Sulfurtransferase TusA 10 79 5.2E-23 T 14-09-2016 IPR001455 TusA-like domain PAJ_RS16400 d7bc13fdd51da6ffb090711c1d944eaa 83 SUPERFAMILY SSF64307 6 80 3.92E-25 T 14-09-2016 IPR001455 TusA-like domain PAJ_RS16400 d7bc13fdd51da6ffb090711c1d944eaa 83 PANTHER PTHR33279:SF5 7 81 3.2E-45 T 14-09-2016 PAJ_RS16400 d7bc13fdd51da6ffb090711c1d944eaa 83 Hamap MF_00413 Sulfurtransferase TusA [tusA]. 3 81 28.9 T 14-09-2016 IPR022931 Sulphurtransferase TusA GO:0016783 PAJ_RS14685 d0e322a651603cad07c8db3448c2d21f 167 Pfam PF06995 Phage P2 GpU 6 125 2.4E-38 T 14-09-2016 IPR009734 Myoviridae, GpU PAJ_RS14685 d0e322a651603cad07c8db3448c2d21f 167 PIRSF PIRSF029208 1 163 1.7E-50 T 14-09-2016 IPR016912 Bacteriophage P2, GpU PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 49 184 2.1E-17 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 1.3E-9 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 186 1.3E-9 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 1.3E-9 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 96 109 1.3E-9 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 SUPERFAMILY SSF56784 3 193 6.46E-43 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 Pfam PF13419 Haloacid dehalogenase-like hydrolase 58 184 2.1E-10 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 PANTHER PTHR12725:SF63 4 188 6.8E-48 T 14-09-2016 PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 Gene3D G3DSA:1.10.150.240 17 81 9.1E-34 T 14-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 PANTHER PTHR12725 4 188 6.8E-48 T 14-09-2016 PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 Gene3D G3DSA:3.40.50.1000 3 16 3.1E-33 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS17440 0950b122e08fceb82eacf16ebb1e7149 198 Gene3D G3DSA:3.40.50.1000 83 192 3.1E-33 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS06015 807383adc2595b734dc0c8b457d09bbc 155 PANTHER PTHR35603:SF1 1 155 1.5E-47 T 14-09-2016 PAJ_RS06015 807383adc2595b734dc0c8b457d09bbc 155 Pfam PF05433 Glycine zipper 2TM domain 62 102 1.2E-6 T 14-09-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 PAJ_RS06015 807383adc2595b734dc0c8b457d09bbc 155 PANTHER PTHR35603 1 155 1.5E-47 T 14-09-2016 PAJ_RS17505 e214f99436e421e2ba40382d8126981e 171 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 6 164 7.1E-48 T 14-09-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 PAJ_RS17505 e214f99436e421e2ba40382d8126981e 171 SUPERFAMILY SSF52540 3 165 4.16E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17505 e214f99436e421e2ba40382d8126981e 171 PANTHER PTHR19136 4 139 3.3E-28 T 14-09-2016 PAJ_RS17505 e214f99436e421e2ba40382d8126981e 171 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 6 138 9.9E-48 T 14-09-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 PAJ_RS17505 e214f99436e421e2ba40382d8126981e 171 Gene3D G3DSA:3.40.50.300 3 165 5.8E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17505 e214f99436e421e2ba40382d8126981e 171 PANTHER PTHR19136:SF82 4 139 3.3E-28 T 14-09-2016 PAJ_RS02750 a2c4de920cc2bfc35fea5872ccb6eac1 523 PANTHER PTHR30365:SF0 376 520 9.7E-268 T 14-09-2016 PAJ_RS02750 a2c4de920cc2bfc35fea5872ccb6eac1 523 PANTHER PTHR30365:SF0 1 310 9.7E-268 T 14-09-2016 PAJ_RS02750 a2c4de920cc2bfc35fea5872ccb6eac1 523 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 4.0E-174 T 14-09-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 PAJ_RS02750 a2c4de920cc2bfc35fea5872ccb6eac1 523 PANTHER PTHR30365 1 310 9.7E-268 T 14-09-2016 PAJ_RS02750 a2c4de920cc2bfc35fea5872ccb6eac1 523 PANTHER PTHR30365 376 520 9.7E-268 T 14-09-2016 PAJ_RS02400 be33d2f52f430bbef60fe3693faabc67 143 Gene3D G3DSA:3.40.630.30 1 132 9.7E-28 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS02400 be33d2f52f430bbef60fe3693faabc67 143 PANTHER PTHR23091 1 134 1.2E-17 T 14-09-2016 PAJ_RS02400 be33d2f52f430bbef60fe3693faabc67 143 SUPERFAMILY SSF55729 1 136 1.22E-25 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS02400 be33d2f52f430bbef60fe3693faabc67 143 Pfam PF13673 Acetyltransferase (GNAT) domain 28 132 8.8E-13 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS03045 929731f67c81bc420c5207254752053f 328 SUPERFAMILY SSF51395 1 310 9.52E-71 T 14-09-2016 PAJ_RS03045 929731f67c81bc420c5207254752053f 328 PANTHER PTHR11082 1 316 5.4E-193 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS03045 929731f67c81bc420c5207254752053f 328 PANTHER PTHR11082:SF26 1 316 5.4E-193 T 14-09-2016 PAJ_RS03045 929731f67c81bc420c5207254752053f 328 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 14-09-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS03045 929731f67c81bc420c5207254752053f 328 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 310 51.776 T 14-09-2016 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 PAJ_RS03045 929731f67c81bc420c5207254752053f 328 Gene3D G3DSA:3.20.20.70 2 239 3.0E-64 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS03045 929731f67c81bc420c5207254752053f 328 Pfam PF01207 Dihydrouridine synthase (Dus) 5 280 2.0E-89 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS03045 929731f67c81bc420c5207254752053f 328 PIRSF PIRSF006621 1 321 1.2E-80 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PAJ_RS08830 48ab2b71a4066e775017fc65b3c32919 119 Pfam PF05400 Flagellar protein FliT 21 106 3.5E-19 T 14-09-2016 IPR008622 Flagellar protein FliT PAJ_RS08830 48ab2b71a4066e775017fc65b3c32919 119 Gene3D G3DSA:1.20.58.380 7 92 2.2E-20 T 14-09-2016 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 Gene3D G3DSA:3.40.50.720 3 259 9.4E-91 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 SUPERFAMILY SSF48179 262 452 8.84E-41 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 Gene3D G3DSA:1.10.1040.10 261 451 1.1E-46 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 194 437 4.7E-71 T 14-09-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 PRINTS PR00084 Mannitol dehydrogenase signature 226 241 1.4E-16 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 PRINTS PR00084 Mannitol dehydrogenase signature 156 169 1.4E-16 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 PRINTS PR00084 Mannitol dehydrogenase signature 6 16 1.4E-16 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 PRINTS PR00084 Mannitol dehydrogenase signature 196 209 1.4E-16 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 PANTHER PTHR30562:SF4 6 452 5.8E-160 T 14-09-2016 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 PANTHER PTHR30562 6 452 5.8E-160 T 14-09-2016 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 6 165 5.6E-35 T 14-09-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 PAJ_RS10740 eb288ba7d34ce7c65b6bb1c2ba6a26a9 463 SUPERFAMILY SSF51735 5 259 7.09E-78 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS09660 76eabe86a50acd61a5be5dc11054a312 344 Hamap MF_01532 L-rhamnose-proton symporter [rhaT]. 1 344 41.599 T 14-09-2016 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 PAJ_RS09660 76eabe86a50acd61a5be5dc11054a312 344 Pfam PF06379 L-rhamnose-proton symport protein (RhaT) 1 344 2.5E-198 T 14-09-2016 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 PAJ_RS01515 1d8f26ae2d52bbe695e9f34cf8a139cf 367 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 11 344 3.4E-15 T 14-09-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 PAJ_RS01515 1d8f26ae2d52bbe695e9f34cf8a139cf 367 Gene3D G3DSA:3.20.20.210 4 367 4.8E-122 T 14-09-2016 PAJ_RS01515 1d8f26ae2d52bbe695e9f34cf8a139cf 367 PANTHER PTHR30519 7 367 1.1E-190 T 14-09-2016 PAJ_RS01515 1d8f26ae2d52bbe695e9f34cf8a139cf 367 PANTHER PTHR30519:SF3 7 367 1.1E-190 T 14-09-2016 PAJ_RS01515 1d8f26ae2d52bbe695e9f34cf8a139cf 367 SUPERFAMILY SSF51726 10 367 1.7E-83 T 14-09-2016 PAJ_RS04635 5f0b69336e1df732e2c1bebecdf0be51 160 Pfam PF12802 MarR family 48 105 1.0E-11 T 14-09-2016 PAJ_RS04635 5f0b69336e1df732e2c1bebecdf0be51 160 SMART SM00347 42 142 2.0E-19 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PAJ_RS04635 5f0b69336e1df732e2c1bebecdf0be51 160 PANTHER PTHR33164 11 153 1.4E-46 T 14-09-2016 PAJ_RS04635 5f0b69336e1df732e2c1bebecdf0be51 160 PANTHER PTHR33164:SF9 11 153 1.4E-46 T 14-09-2016 PAJ_RS04635 5f0b69336e1df732e2c1bebecdf0be51 160 SUPERFAMILY SSF46785 24 153 1.71E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04635 5f0b69336e1df732e2c1bebecdf0be51 160 Gene3D G3DSA:1.10.10.10 22 153 4.1E-34 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12125 5f8248ee574eea82dcbb11d290f94922 144 SUPERFAMILY SSF55961 1 143 4.08E-37 T 14-09-2016 PAJ_RS12125 5f8248ee574eea82dcbb11d290f94922 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 135 4.0E-33 T 14-09-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain PAJ_RS12125 5f8248ee574eea82dcbb11d290f94922 144 Gene3D G3DSA:3.30.530.20 1 142 9.0E-50 T 14-09-2016 IPR023393 START-like domain PAJ_RS12125 5f8248ee574eea82dcbb11d290f94922 144 PANTHER PTHR12901 1 142 2.3E-66 T 14-09-2016 PAJ_RS12125 5f8248ee574eea82dcbb11d290f94922 144 PANTHER PTHR12901:SF7 1 142 2.3E-66 T 14-09-2016 PAJ_RS20100 9a18fd419c8d42c4be15e0b2ac5e6664 152 SUPERFAMILY SSF102400 1 143 1.06E-47 T 14-09-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 PAJ_RS20100 9a18fd419c8d42c4be15e0b2ac5e6664 152 PANTHER PTHR38767 2 149 3.0E-65 T 14-09-2016 PAJ_RS20100 9a18fd419c8d42c4be15e0b2ac5e6664 152 Gene3D G3DSA:3.40.50.10110 1 143 1.1E-53 T 14-09-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 PAJ_RS20100 9a18fd419c8d42c4be15e0b2ac5e6664 152 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 141 1.6E-39 T 14-09-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 PAJ_RS18285 3903860442e5be6d07d5c9b770f7dc16 349 SUPERFAMILY SSF160355 47 313 4.05E-75 T 14-09-2016 PAJ_RS18285 3903860442e5be6d07d5c9b770f7dc16 349 PANTHER PTHR32309:SF16 2 341 4.1E-177 T 14-09-2016 PAJ_RS18285 3903860442e5be6d07d5c9b770f7dc16 349 Gene3D G3DSA:3.30.1890.10 48 216 6.4E-81 T 14-09-2016 PAJ_RS18285 3903860442e5be6d07d5c9b770f7dc16 349 Gene3D G3DSA:3.30.1890.10 252 313 6.4E-81 T 14-09-2016 PAJ_RS18285 3903860442e5be6d07d5c9b770f7dc16 349 Hamap MF_02025 ECA polysaccharide chain length modulation protein [wzzE]. 1 342 54.067 T 14-09-2016 IPR032895 ECA polysaccharide chain length modulation protein WzzE GO:0009246|GO:0016021 UniPathway: UPA00566 PAJ_RS18285 3903860442e5be6d07d5c9b770f7dc16 349 Pfam PF02706 Chain length determinant protein 8 199 3.9E-11 T 14-09-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 PAJ_RS18285 3903860442e5be6d07d5c9b770f7dc16 349 PANTHER PTHR32309 2 341 4.1E-177 T 14-09-2016 PAJ_RS06020 31083d971268907e90cefe5e9e31eae5 378 Gene3D G3DSA:3.30.420.40 5 196 2.2E-72 T 14-09-2016 PAJ_RS06020 31083d971268907e90cefe5e9e31eae5 378 SUPERFAMILY SSF53067 143 340 2.63E-25 T 14-09-2016 PAJ_RS06020 31083d971268907e90cefe5e9e31eae5 378 SUPERFAMILY SSF53067 66 111 2.63E-25 T 14-09-2016 PAJ_RS06020 31083d971268907e90cefe5e9e31eae5 378 SUPERFAMILY SSF53067 5 36 2.63E-25 T 14-09-2016 PAJ_RS06020 31083d971268907e90cefe5e9e31eae5 378 Pfam PF03702 Uncharacterised protein family (UPF0075) 5 367 1.9E-167 T 14-09-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 PAJ_RS06020 31083d971268907e90cefe5e9e31eae5 378 PANTHER PTHR30605 1 372 5.9E-240 T 14-09-2016 PAJ_RS06020 31083d971268907e90cefe5e9e31eae5 378 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 4 367 41.864 T 14-09-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 PAJ_RS06020 31083d971268907e90cefe5e9e31eae5 378 PANTHER PTHR30605:SF2 1 372 5.9E-240 T 14-09-2016 PAJ_RS14810 89d4062f6d6f91221b815a8cd9a22001 469 Gene3D G3DSA:3.40.50.2300 1 99 9.4E-34 T 14-09-2016 PAJ_RS14810 89d4062f6d6f91221b815a8cd9a22001 469 Pfam PF02378 Phosphotransferase system, EIIC 136 403 8.8E-17 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS14810 89d4062f6d6f91221b815a8cd9a22001 469 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 85 5.0E-27 T 14-09-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 PAJ_RS14810 89d4062f6d6f91221b815a8cd9a22001 469 PANTHER PTHR30505 1 458 1.0E-179 T 14-09-2016 PAJ_RS14810 89d4062f6d6f91221b815a8cd9a22001 469 PANTHER PTHR30505:SF0 1 458 1.0E-179 T 14-09-2016 PAJ_RS14810 89d4062f6d6f91221b815a8cd9a22001 469 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 120 459 9.6E-113 T 14-09-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 PAJ_RS14810 89d4062f6d6f91221b815a8cd9a22001 469 SUPERFAMILY SSF52794 2 100 1.92E-30 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS14810 89d4062f6d6f91221b815a8cd9a22001 469 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 91 2.6E-14 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS18455 119f886c13540d7de2a7ccb81af863a7 207 PANTHER PTHR30086:SF1 1 207 4.1E-115 T 14-09-2016 PAJ_RS18455 119f886c13540d7de2a7ccb81af863a7 207 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 18 203 5.6E-59 T 14-09-2016 IPR004778 Homoserine/Threonine efflux protein GO:0016021 PAJ_RS18455 119f886c13540d7de2a7ccb81af863a7 207 Pfam PF01810 LysE type translocator 14 206 1.5E-49 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS18455 119f886c13540d7de2a7ccb81af863a7 207 PANTHER PTHR30086 1 207 4.1E-115 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS18935 8f1eb0a00597159d5f951c56f1d92e46 423 Gene3D G3DSA:2.40.160.60 33 408 2.0E-7 T 14-09-2016 PAJ_RS18935 8f1eb0a00597159d5f951c56f1d92e46 423 SUPERFAMILY SSF56925 312 386 1.49E-5 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS18935 8f1eb0a00597159d5f951c56f1d92e46 423 Pfam PF13729 F plasmid transfer operon, TraF, protein 55 340 1.0E-83 T 14-09-2016 IPR032811 Putative conjugal transfer protein TraF-related PAJ_RS10100 b15fa72b97935e58efc9d823482337c4 187 Pfam PF00578 AhpC/TSA family 12 133 3.6E-33 T 14-09-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 PAJ_RS10100 b15fa72b97935e58efc9d823482337c4 187 PIRSF PIRSF000239 1 187 5.1E-52 T 14-09-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 PAJ_RS10100 b15fa72b97935e58efc9d823482337c4 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 7.6E-105 T 14-09-2016 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PAJ_RS10100 b15fa72b97935e58efc9d823482337c4 187 PANTHER PTHR10681:SF121 1 187 6.0E-94 T 14-09-2016 PAJ_RS10100 b15fa72b97935e58efc9d823482337c4 187 PANTHER PTHR10681 1 187 6.0E-94 T 14-09-2016 PAJ_RS10100 b15fa72b97935e58efc9d823482337c4 187 SUPERFAMILY SSF52833 1 186 1.3E-54 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10100 b15fa72b97935e58efc9d823482337c4 187 Gene3D G3DSA:3.40.30.10 4 183 3.3E-60 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10100 b15fa72b97935e58efc9d823482337c4 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 181 7.2E-7 T 14-09-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PAJ_RS19360 3b20425ebecdd3c1f720ba0b83e2e882 143 SUPERFAMILY SSF51316 1 127 3.35E-30 T 14-09-2016 IPR011057 Mss4-like PAJ_RS19360 3b20425ebecdd3c1f720ba0b83e2e882 143 Gene3D G3DSA:3.90.1590.10 2 119 1.9E-26 T 14-09-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 PAJ_RS19360 3b20425ebecdd3c1f720ba0b83e2e882 143 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 23 102 3.8E-16 T 14-09-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 PAJ_RS19360 3b20425ebecdd3c1f720ba0b83e2e882 143 PANTHER PTHR33337 1 116 7.7E-17 T 14-09-2016 PAJ_RS19360 3b20425ebecdd3c1f720ba0b83e2e882 143 PANTHER PTHR33337:SF11 1 116 7.7E-17 T 14-09-2016 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 Pfam PF01266 FAD dependent oxidoreductase 2 396 5.2E-68 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 PANTHER PTHR13847:SF148 1 63 1.0E-229 T 14-09-2016 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 PANTHER PTHR13847:SF148 107 416 1.0E-229 T 14-09-2016 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 PANTHER PTHR13847 107 416 1.0E-229 T 14-09-2016 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 PANTHER PTHR13847 1 63 1.0E-229 T 14-09-2016 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 SUPERFAMILY SSF54373 269 359 5.23E-17 T 14-09-2016 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 Gene3D G3DSA:3.30.9.10 135 189 1.2E-15 T 14-09-2016 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 Gene3D G3DSA:3.30.9.10 270 358 1.2E-15 T 14-09-2016 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 51.955 T 14-09-2016 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 UniPathway: UPA00043 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 Gene3D G3DSA:3.50.50.60 108 122 7.2E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 Gene3D G3DSA:3.50.50.60 1 55 7.2E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 Gene3D G3DSA:3.50.50.60 359 415 7.2E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 Gene3D G3DSA:3.50.50.60 190 269 7.2E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 SUPERFAMILY SSF51905 107 271 3.63E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 SUPERFAMILY SSF51905 1 54 3.63E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS16550 f991abef9c657d249a555d60bf7a5087 416 SUPERFAMILY SSF51905 359 415 3.63E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 SMART SM00487 23 225 2.8E-58 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 PANTHER PTHR24031 3 431 1.5E-228 T 14-09-2016 PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 Gene3D G3DSA:3.40.50.300 3 214 2.0E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 SMART SM00490 262 343 2.4E-29 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 Gene3D G3DSA:3.40.50.300 215 374 1.6E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 SUPERFAMILY SSF52540 76 358 8.83E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 Pfam PF00270 DEAD/DEAH box helicase 28 198 4.8E-47 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 Pfam PF00271 Helicase conserved C-terminal domain 235 343 4.2E-28 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 PANTHER PTHR24031:SF334 3 431 1.5E-228 T 14-09-2016 PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 14-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PAJ_RS12085 5e2a2189df389b03f41c96d165711a95 442 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 4 427 50.028 T 14-09-2016 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 PAJ_RS13065 ab8ec3c195d9b2a66dc3fe4af344cff3 454 PANTHER PTHR31223:SF12 83 342 9.8E-182 T 14-09-2016 PAJ_RS13065 ab8ec3c195d9b2a66dc3fe4af344cff3 454 PANTHER PTHR31223:SF12 359 384 9.8E-182 T 14-09-2016 PAJ_RS13065 ab8ec3c195d9b2a66dc3fe4af344cff3 454 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 2.8E-46 T 14-09-2016 IPR027820 Domain of unknown function DUF4478 PAJ_RS13065 ab8ec3c195d9b2a66dc3fe4af344cff3 454 Pfam PF11892 Domain of unknown function (DUF3412) 333 453 2.0E-57 T 14-09-2016 IPR021826 Protein of unknown function DUF3412 PAJ_RS13065 ab8ec3c195d9b2a66dc3fe4af344cff3 454 Gene3D G3DSA:3.40.50.450 126 452 1.6E-122 T 14-09-2016 PAJ_RS13065 ab8ec3c195d9b2a66dc3fe4af344cff3 454 Pfam PF03641 Possible lysine decarboxylase 190 329 6.9E-33 T 14-09-2016 IPR031100 LOG family PAJ_RS13065 ab8ec3c195d9b2a66dc3fe4af344cff3 454 SUPERFAMILY SSF102405 124 330 1.53E-41 T 14-09-2016 PAJ_RS13065 ab8ec3c195d9b2a66dc3fe4af344cff3 454 PANTHER PTHR31223 83 342 9.8E-182 T 14-09-2016 PAJ_RS13065 ab8ec3c195d9b2a66dc3fe4af344cff3 454 Gene3D G3DSA:3.30.1850.10 2 113 7.3E-54 T 14-09-2016 IPR027820 Domain of unknown function DUF4478 PAJ_RS13065 ab8ec3c195d9b2a66dc3fe4af344cff3 454 PANTHER PTHR31223 359 384 9.8E-182 T 14-09-2016 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 Gene3D G3DSA:2.60.40.10 113 220 4.0E-38 T 14-09-2016 IPR013783 Immunoglobulin-like fold PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 Gene3D G3DSA:2.60.40.10 14 105 5.1E-19 T 14-09-2016 IPR013783 Immunoglobulin-like fold PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 PANTHER PTHR10357 49 724 0.0 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 125 207 4.3E-22 T 14-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 PANTHER PTHR10357:SF158 49 724 0.0 T 14-09-2016 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 SUPERFAMILY SSF81296 117 223 6.3E-32 T 14-09-2016 IPR014756 Immunoglobulin E-set PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 101 725 43.632 T 14-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 SUPERFAMILY SSF51445 232 621 5.09E-111 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 SUPERFAMILY SSF81296 16 115 2.8E-17 T 14-09-2016 IPR014756 Immunoglobulin E-set PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 Pfam PF00128 Alpha amylase, catalytic domain 273 343 3.2E-9 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 SMART SM00642 247 596 3.4E-6 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 Gene3D G3DSA:2.60.40.1180 623 724 1.5E-37 T 14-09-2016 IPR013780 Glycosyl hydrolase, all-beta PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 109 722 0.0 T 14-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 PIRSF PIRSF000463 6 727 1.0E-283 T 14-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 SUPERFAMILY SSF51011 623 725 3.15E-33 T 14-09-2016 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 628 724 1.7E-23 T 14-09-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 PAJ_RS16245 e5069ba21ab47b25b5111e2d0ceb769a 727 Gene3D G3DSA:3.20.20.80 241 611 9.6E-92 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 PANTHER PTHR21581 27 403 1.8E-225 T 14-09-2016 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 SUPERFAMILY SSF69189 292 385 2.55E-25 T 14-09-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 Gene3D G3DSA:3.40.710.10 38 290 1.5E-94 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 SMART SM00936 292 383 1.4E-33 T 14-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 PANTHER PTHR21581:SF4 27 403 1.8E-225 T 14-09-2016 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 292 382 1.4E-25 T 14-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 Gene3D G3DSA:2.60.410.10 292 383 2.1E-32 T 14-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 39 272 1.2E-100 T 14-09-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 131 148 8.2E-18 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 72 83 8.2E-18 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 158 171 8.2E-18 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PAJ_RS02430 f9526e40266b048eb95bbfa3550dba80 403 SUPERFAMILY SSF56601 18 292 3.27E-78 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS15440 9d50bd7971f23e74f2b8dad2bf2abc94 182 Gene3D G3DSA:3.30.420.10 5 181 3.4E-71 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS15440 9d50bd7971f23e74f2b8dad2bf2abc94 182 Hamap MF_00045 Oligoribonuclease [orn]. 4 182 44.542 T 14-09-2016 IPR022894 Oligoribonuclease GO:0016788 PAJ_RS15440 9d50bd7971f23e74f2b8dad2bf2abc94 182 PANTHER PTHR11046 5 182 2.2E-123 T 14-09-2016 PAJ_RS15440 9d50bd7971f23e74f2b8dad2bf2abc94 182 Pfam PF00929 Exonuclease 10 171 7.0E-38 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PAJ_RS15440 9d50bd7971f23e74f2b8dad2bf2abc94 182 SMART SM00479 8 181 1.3E-22 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PAJ_RS15440 9d50bd7971f23e74f2b8dad2bf2abc94 182 SUPERFAMILY SSF53098 5 181 2.99E-48 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS15440 9d50bd7971f23e74f2b8dad2bf2abc94 182 PANTHER PTHR11046:SF1 5 182 2.2E-123 T 14-09-2016 PAJ_RS00410 2bdd1d5ad3631fbc1460f3c563948e8f 298 Gene3D G3DSA:3.90.1170.20 19 150 9.0E-50 T 14-09-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 PAJ_RS00410 2bdd1d5ad3631fbc1460f3c563948e8f 298 Gene3D G3DSA:3.20.20.70 151 284 3.6E-59 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS00410 2bdd1d5ad3631fbc1460f3c563948e8f 298 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 130 294 2.5E-59 T 14-09-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 PAJ_RS00410 2bdd1d5ad3631fbc1460f3c563948e8f 298 PIRSF PIRSF006250 17 298 1.4E-106 T 14-09-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD PAJ_RS00410 2bdd1d5ad3631fbc1460f3c563948e8f 298 SUPERFAMILY SSF51690 130 295 3.81E-58 T 14-09-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 PAJ_RS00410 2bdd1d5ad3631fbc1460f3c563948e8f 298 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 27 295 5.4E-99 T 14-09-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 PAJ_RS00410 2bdd1d5ad3631fbc1460f3c563948e8f 298 SUPERFAMILY SSF54675 14 129 3.53E-31 T 14-09-2016 PAJ_RS00410 2bdd1d5ad3631fbc1460f3c563948e8f 298 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 43 128 7.3E-25 T 14-09-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 PAJ_RS00410 2bdd1d5ad3631fbc1460f3c563948e8f 298 PANTHER PTHR32179 1 298 6.8E-128 T 14-09-2016 PAJ_RS19435 11f682caf6de7c5693015e54cd89c02a 431 PIRSF PIRSF002808 5 430 1.9E-34 T 14-09-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PAJ_RS19435 11f682caf6de7c5693015e54cd89c02a 431 Pfam PF07690 Major Facilitator Superfamily 26 386 1.3E-54 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS19435 11f682caf6de7c5693015e54cd89c02a 431 PANTHER PTHR11662 11 419 4.4E-138 T 14-09-2016 PAJ_RS19435 11f682caf6de7c5693015e54cd89c02a 431 PANTHER PTHR11662:SF283 11 419 4.4E-138 T 14-09-2016 PAJ_RS19435 11f682caf6de7c5693015e54cd89c02a 431 Gene3D G3DSA:1.20.1250.20 237 417 5.6E-26 T 14-09-2016 PAJ_RS19435 11f682caf6de7c5693015e54cd89c02a 431 Gene3D G3DSA:1.20.1250.20 19 212 2.3E-43 T 14-09-2016 PAJ_RS19435 11f682caf6de7c5693015e54cd89c02a 431 SUPERFAMILY SSF103473 12 420 6.8E-86 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS01805 6c8fdfb8a4a44e847f4b04805e544abd 71 SUPERFAMILY SSF68989 4 71 3.14E-31 T 14-09-2016 IPR007985 Haemolysin expression modulating, HHA PAJ_RS01805 6c8fdfb8a4a44e847f4b04805e544abd 71 Gene3D G3DSA:1.20.1280.40 4 71 4.3E-37 T 14-09-2016 IPR007985 Haemolysin expression modulating, HHA PAJ_RS01805 6c8fdfb8a4a44e847f4b04805e544abd 71 Pfam PF05321 Haemolysin expression modulating protein 12 68 8.8E-33 T 14-09-2016 IPR007985 Haemolysin expression modulating, HHA PAJ_RS17190 51c9091199324b2d2de3f1fd809b7bd7 433 SUPERFAMILY SSF51261 235 431 1.57E-47 T 14-09-2016 IPR011055 Duplicated hybrid motif PAJ_RS17190 51c9091199324b2d2de3f1fd809b7bd7 433 Gene3D G3DSA:2.70.70.10 296 432 8.8E-38 T 14-09-2016 PAJ_RS17190 51c9091199324b2d2de3f1fd809b7bd7 433 PANTHER PTHR21666 21 432 5.6E-162 T 14-09-2016 PAJ_RS17190 51c9091199324b2d2de3f1fd809b7bd7 433 Pfam PF01551 Peptidase family M23 334 427 5.6E-27 T 14-09-2016 IPR016047 Peptidase M23 PAJ_RS17190 51c9091199324b2d2de3f1fd809b7bd7 433 PANTHER PTHR21666:SF213 21 432 5.6E-162 T 14-09-2016 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 4.0E-55 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 PRINTS PR00474 Glutamate 5-kinase family signature 42 56 4.0E-55 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 PRINTS PR00474 Glutamate 5-kinase family signature 148 175 4.0E-55 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 4.0E-55 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 PRINTS PR00474 Glutamate 5-kinase family signature 76 104 4.0E-55 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 Pfam PF00696 Amino acid kinase family 6 234 3.3E-42 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 258 35.656 T 14-09-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 SUPERFAMILY SSF53633 6 256 2.09E-65 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 365 9.3E-152 T 14-09-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 Gene3D G3DSA:3.40.1160.10 4 261 2.4E-57 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 PANTHER PTHR11063 5 367 1.1E-140 T 14-09-2016 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 PIRSF PIRSF000729 1 367 3.2E-140 T 14-09-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 SUPERFAMILY SSF88697 276 366 2.54E-23 T 14-09-2016 IPR015947 PUA-like domain PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 14-09-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 Gene3D G3DSA:2.30.130.10 273 365 7.5E-25 T 14-09-2016 IPR015947 PUA-like domain PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 SMART SM00359 276 359 8.7E-22 T 14-09-2016 IPR002478 PUA domain GO:0003723 PAJ_RS01175 ab84c206631c8a3866e7c42c0a6fb0a9 367 Pfam PF01472 PUA domain 276 350 4.4E-21 T 14-09-2016 IPR002478 PUA domain GO:0003723 PAJ_RS10585 fa627b54761131eab793c19b0b99f744 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.156 T 14-09-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 PAJ_RS10585 fa627b54761131eab793c19b0b99f744 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 93 6.0E-20 T 14-09-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 PAJ_RS10585 fa627b54761131eab793c19b0b99f744 100 PANTHER PTHR11434:SF4 3 100 3.6E-62 T 14-09-2016 PAJ_RS10585 fa627b54761131eab793c19b0b99f744 100 PANTHER PTHR11434 3 100 3.6E-62 T 14-09-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 PAJ_RS06065 ba853fcbde5797026455f11b6d5b2f09 322 PANTHER PTHR31290 32 313 3.0E-26 T 14-09-2016 PAJ_RS06065 ba853fcbde5797026455f11b6d5b2f09 322 Pfam PF03851 UV-endonuclease UvdE 3 253 3.8E-42 T 14-09-2016 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 PAJ_RS10325 72143ce989cfb2915dc25c2da8e2c310 398 Pfam PF07690 Major Facilitator Superfamily 16 357 3.7E-45 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS10325 72143ce989cfb2915dc25c2da8e2c310 398 Gene3D G3DSA:1.20.1250.20 196 389 8.2E-11 T 14-09-2016 PAJ_RS10325 72143ce989cfb2915dc25c2da8e2c310 398 SUPERFAMILY SSF103473 11 395 1.57E-67 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS10325 72143ce989cfb2915dc25c2da8e2c310 398 Gene3D G3DSA:1.20.1250.20 12 194 3.7E-33 T 14-09-2016 PAJ_RS10325 72143ce989cfb2915dc25c2da8e2c310 398 PANTHER PTHR23502 11 382 9.6E-190 T 14-09-2016 PAJ_RS10325 72143ce989cfb2915dc25c2da8e2c310 398 PANTHER PTHR23502:SF39 11 382 9.6E-190 T 14-09-2016 PAJ_RS10325 72143ce989cfb2915dc25c2da8e2c310 398 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 11 390 2.0E-137 T 14-09-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 261 4.7E-63 T 14-09-2016 PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PANTHER PTHR24322 155 186 4.7E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PANTHER PTHR24322 12 139 4.7E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 SUPERFAMILY SSF51735 7 261 9.69E-82 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 Gene3D G3DSA:3.40.50.720 1 262 7.1E-85 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.6E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 4.6E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 4.6E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PANTHER PTHR24322:SF330 12 139 4.7E-51 T 14-09-2016 PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PANTHER PTHR24322:SF330 155 186 4.7E-51 T 14-09-2016 PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.1E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.1E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.1E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 225 245 2.1E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.1E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05645 06e1b665b0985d46a3b7bcac25b15f04 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.1E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 SUPERFAMILY SSF52374 64 231 1.15E-18 T 14-09-2016 PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 Gene3D G3DSA:1.10.260.40 5 58 1.8E-10 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 SUPERFAMILY SSF47413 6 59 9.19E-9 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 Gene3D G3DSA:3.40.50.300 231 399 1.9E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 SUPERFAMILY SSF52540 232 381 1.43E-24 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 SMART SM00530 6 62 5.7E-8 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 TIGRFAM TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase 64 395 9.7E-152 T 14-09-2016 IPR006417 Nicotinamide-nucleotide adenylyltransferase GO:0003677|GO:0006355|GO:0006810|GO:0019363 KEGG: 00760+2.7.7.1+2.7.1.22|UniPathway: UPA00253|UniPathway: UPA00253 PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 Pfam PF01381 Helix-turn-helix 7 58 2.1E-8 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 Pfam PF13521 AAA domain 234 394 7.8E-29 T 14-09-2016 PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 66 136 2.4E-19 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 PIRSF PIRSF004776 2 411 7.4E-205 T 14-09-2016 IPR016429 Bifunctional transcriptional regulator NadR GO:0045892 KEGG: 00760+2.7.7.1+2.7.1.22|UniPathway: UPA00253|UniPathway: UPA00253 PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 PANTHER PTHR37512 14 408 3.0E-145 T 14-09-2016 PAJ_RS20755 17cfbb4e9f6e9333bd7c37cf98b66aa5 412 Gene3D G3DSA:3.40.50.620 64 230 9.3E-51 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS18485 ca51d9dd3ca75b7406512089df6b405c 159 PANTHER PTHR37805:SF1 1 156 1.6E-74 T 14-09-2016 PAJ_RS18485 ca51d9dd3ca75b7406512089df6b405c 159 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 1.0E-27 T 14-09-2016 IPR009921 Domain of unknown function DUF1456 PAJ_RS18485 ca51d9dd3ca75b7406512089df6b405c 159 Pfam PF07308 Protein of unknown function (DUF1456) 86 152 6.6E-24 T 14-09-2016 IPR009921 Domain of unknown function DUF1456 PAJ_RS18485 ca51d9dd3ca75b7406512089df6b405c 159 PANTHER PTHR37805 1 156 1.6E-74 T 14-09-2016 PAJ_RS16490 81952ac6bf1f6ed8ccc6c749c33a37bb 154 PANTHER PTHR11019 9 116 2.0E-32 T 14-09-2016 PAJ_RS16490 81952ac6bf1f6ed8ccc6c749c33a37bb 154 Gene3D G3DSA:1.10.10.60 6 61 1.9E-18 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS16490 81952ac6bf1f6ed8ccc6c749c33a37bb 154 SUPERFAMILY SSF46689 63 113 2.87E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS16490 81952ac6bf1f6ed8ccc6c749c33a37bb 154 Pfam PF12833 Helix-turn-helix domain 31 109 5.1E-18 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS16490 81952ac6bf1f6ed8ccc6c749c33a37bb 154 Gene3D G3DSA:1.10.10.60 67 112 2.0E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS16490 81952ac6bf1f6ed8ccc6c749c33a37bb 154 SMART SM00342 25 108 7.4E-22 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS16490 81952ac6bf1f6ed8ccc6c749c33a37bb 154 SUPERFAMILY SSF46689 10 59 2.6E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS16490 81952ac6bf1f6ed8ccc6c749c33a37bb 154 PANTHER PTHR11019:SF84 9 116 2.0E-32 T 14-09-2016 PAJ_RS19465 976004b57aae01e587778811545f79eb 366 PANTHER PTHR32196:SF21 28 298 1.1E-41 T 14-09-2016 PAJ_RS19465 976004b57aae01e587778811545f79eb 366 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 323 4.0E-29 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS19465 976004b57aae01e587778811545f79eb 366 PANTHER PTHR32196 28 298 1.1E-41 T 14-09-2016 PAJ_RS01165 54f1bbb89454d54a6093ea988b8ec970 133 Pfam PF07417 Transcriptional regulator Crl 5 122 9.5E-52 T 14-09-2016 IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 PAJ_RS01165 54f1bbb89454d54a6093ea988b8ec970 133 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 1 128 31.184 T 14-09-2016 IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 PAJ_RS16705 9cdc23b2ab289ef553ac8232bcb33015 167 Pfam PF00583 Acetyltransferase (GNAT) family 57 138 1.1E-17 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS16705 9cdc23b2ab289ef553ac8232bcb33015 167 Gene3D G3DSA:3.40.630.30 1 165 9.1E-39 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS16705 9cdc23b2ab289ef553ac8232bcb33015 167 PANTHER PTHR23091:SF262 2 165 2.5E-30 T 14-09-2016 PAJ_RS16705 9cdc23b2ab289ef553ac8232bcb33015 167 SUPERFAMILY SSF55729 3 162 9.78E-39 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS16705 9cdc23b2ab289ef553ac8232bcb33015 167 PANTHER PTHR23091 2 165 2.5E-30 T 14-09-2016 PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 1 556 46.859 T 14-09-2016 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 Pfam PF12343 Cold shock protein DEAD box A 567 628 3.9E-5 T 14-09-2016 IPR021046 Cold-shock protein, DEAD box A, C-terminal GO:0016817 PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 Gene3D G3DSA:3.40.50.300 6 207 4.2E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 14-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 SMART SM00487 25 223 5.8E-64 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 PANTHER PTHR24031:SF261 6 460 2.1E-261 T 14-09-2016 PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 PANTHER PTHR24031:SF261 528 629 2.1E-261 T 14-09-2016 PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 Pfam PF00270 DEAD/DEAH box helicase 31 195 5.5E-52 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 Gene3D G3DSA:3.40.50.300 208 374 6.0E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 SMART SM00490 258 339 1.5E-31 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 Pfam PF03880 DbpA RNA binding domain 485 554 2.2E-20 T 14-09-2016 IPR005580 DbpA, RNA-binding domain PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 Pfam PF00271 Helicase conserved C-terminal domain 231 339 2.0E-28 T 14-09-2016 IPR001650 Helicase, C-terminal PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 SUPERFAMILY SSF52540 6 209 5.03E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 PANTHER PTHR24031 6 460 2.1E-261 T 14-09-2016 PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 PANTHER PTHR24031 528 629 2.1E-261 T 14-09-2016 PAJ_RS19935 2e05a3e46aa0abc4cc34651e1e0a605d 630 SUPERFAMILY SSF52540 147 353 3.33E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 PANTHER PTHR10458 1 168 1.0E-106 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 SUPERFAMILY SSF56420 3 165 7.72E-61 T 14-09-2016 IPR023635 Peptide deformylase PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 Gene3D G3DSA:3.90.45.10 5 167 9.5E-62 T 14-09-2016 IPR023635 Peptide deformylase PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 1.5E-63 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 PRINTS PR01576 Peptide deformylase signature 89 100 7.6E-38 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 PRINTS PR01576 Peptide deformylase signature 33 62 7.6E-38 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 PRINTS PR01576 Peptide deformylase signature 120 149 7.6E-38 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 PRINTS PR01576 Peptide deformylase signature 101 119 7.6E-38 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 PANTHER PTHR10458:SF10 1 168 1.0E-106 T 14-09-2016 PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 Pfam PF01327 Polypeptide deformylase 4 152 2.8E-49 T 14-09-2016 IPR023635 Peptide deformylase PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.359 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PAJ_RS15690 5c3e0b1d9258f8c2bf4cd10865a496de 170 PIRSF PIRSF004749 1 170 4.3E-54 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PAJ_RS15095 4a8ea1016c44f1dcd03e8d549dccc222 190 PANTHER PTHR34606:SF4 1 189 6.9E-86 T 14-09-2016 PAJ_RS15095 4a8ea1016c44f1dcd03e8d549dccc222 190 PANTHER PTHR34606 1 189 6.9E-86 T 14-09-2016 PAJ_RS15095 4a8ea1016c44f1dcd03e8d549dccc222 190 SMART SM00749 128 190 2.6E-6 T 14-09-2016 IPR014004 Transport-associated and nodulation domain, bacteria PAJ_RS15095 4a8ea1016c44f1dcd03e8d549dccc222 190 SMART SM00749 50 113 5.1E-9 T 14-09-2016 IPR014004 Transport-associated and nodulation domain, bacteria PAJ_RS15095 4a8ea1016c44f1dcd03e8d549dccc222 190 Pfam PF04972 BON domain 45 113 4.6E-14 T 14-09-2016 IPR007055 BON domain PAJ_RS15095 4a8ea1016c44f1dcd03e8d549dccc222 190 Pfam PF04972 BON domain 123 187 1.8E-17 T 14-09-2016 IPR007055 BON domain PAJ_RS04925 19626e6ba003449cb9c97194206844a9 245 Pfam PF02811 PHP domain 5 98 2.5E-8 T 14-09-2016 IPR004013 PHP domain GO:0003824 PAJ_RS04925 19626e6ba003449cb9c97194206844a9 245 PANTHER PTHR36928 1 245 5.6E-104 T 14-09-2016 PAJ_RS04925 19626e6ba003449cb9c97194206844a9 245 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 1 243 48.411 T 14-09-2016 IPR023710 Probable phosphatase YcdX GO:0008270 PAJ_RS04925 19626e6ba003449cb9c97194206844a9 245 SMART SM00481 4 78 4.6E-19 T 14-09-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 PAJ_RS04925 19626e6ba003449cb9c97194206844a9 245 SUPERFAMILY SSF89550 3 237 2.49E-63 T 14-09-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 PAJ_RS04925 19626e6ba003449cb9c97194206844a9 245 Gene3D G3DSA:3.20.20.140 1 237 2.1E-63 T 14-09-2016 PAJ_RS15030 6f5de315a34cb57cbf31ff6f2ac12c3e 136 PANTHER PTHR33452:SF8 1 129 1.4E-81 T 14-09-2016 PAJ_RS15030 6f5de315a34cb57cbf31ff6f2ac12c3e 136 PANTHER PTHR33452 1 129 1.4E-81 T 14-09-2016 PAJ_RS15030 6f5de315a34cb57cbf31ff6f2ac12c3e 136 Pfam PF07681 DoxX 8 87 1.3E-17 T 14-09-2016 IPR032808 DoxX family PAJ_RS20190 8f5b5f88bf936bb6a376e4b52f791d3e 500 Gene3D G3DSA:3.40.50.300 18 108 1.8E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20190 8f5b5f88bf936bb6a376e4b52f791d3e 500 Gene3D G3DSA:3.40.50.300 204 380 1.8E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20190 8f5b5f88bf936bb6a376e4b52f791d3e 500 Pfam PF05872 Bacterial protein of unknown function (DUF853) 5 500 4.2E-242 T 14-09-2016 IPR033186 Helicase HerA-like C-terminal PAJ_RS20190 8f5b5f88bf936bb6a376e4b52f791d3e 500 PANTHER PTHR30121:SF3 12 441 7.3E-182 T 14-09-2016 PAJ_RS20190 8f5b5f88bf936bb6a376e4b52f791d3e 500 PANTHER PTHR30121 12 441 7.3E-182 T 14-09-2016 PAJ_RS20190 8f5b5f88bf936bb6a376e4b52f791d3e 500 SUPERFAMILY SSF52540 17 369 1.19E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 PANTHER PTHR23501:SF65 3 491 1.5E-188 T 14-09-2016 PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 70 92 1.3E-5 T 14-09-2016 PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 394 413 1.3E-5 T 14-09-2016 PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 132 156 1.3E-5 T 14-09-2016 PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 Gene3D G3DSA:1.20.1250.20 458 480 6.7E-14 T 14-09-2016 PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 Gene3D G3DSA:1.20.1250.20 261 415 6.7E-14 T 14-09-2016 PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 PANTHER PTHR23501 3 491 1.5E-188 T 14-09-2016 PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 Pfam PF07690 Major Facilitator Superfamily 12 403 2.1E-41 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 SUPERFAMILY SSF103473 3 191 2.22E-56 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 SUPERFAMILY SSF103473 458 480 2.22E-56 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 SUPERFAMILY SSF103473 242 413 2.22E-56 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS04345 8441801714f44fb88d933b00a60b1f37 495 Gene3D G3DSA:1.20.1250.20 10 191 4.6E-24 T 14-09-2016 PAJ_RS12360 a81ba81a78eaad3e20c3f24d8297956f 319 Gene3D G3DSA:3.40.50.720 106 284 1.3E-59 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12360 a81ba81a78eaad3e20c3f24d8297956f 319 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 283 3.3E-57 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PAJ_RS12360 a81ba81a78eaad3e20c3f24d8297956f 319 SUPERFAMILY SSF52283 16 116 9.45E-29 T 14-09-2016 PAJ_RS12360 a81ba81a78eaad3e20c3f24d8297956f 319 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 193 215 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PAJ_RS12360 a81ba81a78eaad3e20c3f24d8297956f 319 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 314 2.8E-29 T 14-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PAJ_RS12360 a81ba81a78eaad3e20c3f24d8297956f 319 PANTHER PTHR10996 3 311 1.5E-106 T 14-09-2016 PAJ_RS12360 a81ba81a78eaad3e20c3f24d8297956f 319 PANTHER PTHR10996:SF20 3 311 1.5E-106 T 14-09-2016 PAJ_RS12360 a81ba81a78eaad3e20c3f24d8297956f 319 Gene3D G3DSA:3.40.50.720 2 105 1.6E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS12360 a81ba81a78eaad3e20c3f24d8297956f 319 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 222 238 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PAJ_RS12360 a81ba81a78eaad3e20c3f24d8297956f 319 SUPERFAMILY SSF51735 100 284 5.58E-53 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17795 7f3d1e5216b7205f08f7f6cd50ec8a19 71 Gene3D G3DSA:3.30.1660.10 24 71 1.9E-13 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS17795 7f3d1e5216b7205f08f7f6cd50ec8a19 71 SUPERFAMILY SSF159871 5 71 1.83E-13 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS17795 7f3d1e5216b7205f08f7f6cd50ec8a19 71 Pfam PF07338 Protein of unknown function (DUF1471) 26 71 8.7E-9 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS12500 a874711ef43238b03aafe4bcdee5b440 80 PANTHER PTHR34386 1 80 3.2E-34 T 14-09-2016 PAJ_RS12500 a874711ef43238b03aafe4bcdee5b440 80 SUPERFAMILY SSF52833 1 71 9.49E-20 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS12500 a874711ef43238b03aafe4bcdee5b440 80 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 72 2.0E-34 T 14-09-2016 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 PAJ_RS12500 a874711ef43238b03aafe4bcdee5b440 80 PANTHER PTHR34386:SF3 1 80 3.2E-34 T 14-09-2016 PAJ_RS12500 a874711ef43238b03aafe4bcdee5b440 80 Gene3D G3DSA:3.40.30.10 1 72 5.7E-29 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS12500 a874711ef43238b03aafe4bcdee5b440 80 Pfam PF00462 Glutaredoxin 3 61 1.4E-15 T 14-09-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 PAJ_RS00195 6bc9aebbf102760e1abc130850b380c3 536 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 362 525 6.9E-10 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00195 6bc9aebbf102760e1abc130850b380c3 536 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 264 1.0E-10 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00195 6bc9aebbf102760e1abc130850b380c3 536 SUPERFAMILY SSF161098 292 528 4.58E-32 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00195 6bc9aebbf102760e1abc130850b380c3 536 Gene3D G3DSA:1.10.3720.10 19 266 2.2E-32 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00195 6bc9aebbf102760e1abc130850b380c3 536 Gene3D G3DSA:1.10.3720.10 293 531 1.0E-30 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00195 6bc9aebbf102760e1abc130850b380c3 536 PANTHER PTHR30183 1 535 4.6E-260 T 14-09-2016 PAJ_RS00195 6bc9aebbf102760e1abc130850b380c3 536 SUPERFAMILY SSF161098 10 264 2.83E-40 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00195 6bc9aebbf102760e1abc130850b380c3 536 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 8 524 4.4E-239 T 14-09-2016 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 PAJ_RS00195 6bc9aebbf102760e1abc130850b380c3 536 PANTHER PTHR30183:SF8 1 535 4.6E-260 T 14-09-2016 PAJ_RS09525 6a31f27244c28a17b538aeef40ced435 485 Pfam PF00171 Aldehyde dehydrogenase family 22 479 9.1E-170 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS09525 6a31f27244c28a17b538aeef40ced435 485 PANTHER PTHR11699:SF49 1 479 2.3E-280 T 14-09-2016 PAJ_RS09525 6a31f27244c28a17b538aeef40ced435 485 Gene3D G3DSA:3.40.605.10 13 271 9.5E-100 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PAJ_RS09525 6a31f27244c28a17b538aeef40ced435 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 285 296 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS09525 6a31f27244c28a17b538aeef40ced435 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 257 264 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PAJ_RS09525 6a31f27244c28a17b538aeef40ced435 485 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 33 478 2.7E-207 T 14-09-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 UniPathway: UPA00733 PAJ_RS09525 6a31f27244c28a17b538aeef40ced435 485 PANTHER PTHR11699 1 479 2.3E-280 T 14-09-2016 PAJ_RS09525 6a31f27244c28a17b538aeef40ced435 485 Gene3D G3DSA:3.40.309.10 272 455 2.1E-69 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PAJ_RS09525 6a31f27244c28a17b538aeef40ced435 485 SUPERFAMILY SSF53720 6 482 7.2E-172 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS03525 93f32ba7b218dc5552d684ad6d91ebbd 549 SUPERFAMILY SSF52540 1 330 4.15E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03525 93f32ba7b218dc5552d684ad6d91ebbd 549 PANTHER PTHR32182 1 548 3.3E-173 T 14-09-2016 PAJ_RS03525 93f32ba7b218dc5552d684ad6d91ebbd 549 Pfam PF11398 Protein of unknown function (DUF2813) 1 373 2.8E-119 T 14-09-2016 IPR022602 Protein of unknown function DUF2813 PAJ_RS03525 93f32ba7b218dc5552d684ad6d91ebbd 549 Gene3D G3DSA:3.40.50.300 1 340 6.1E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03525 93f32ba7b218dc5552d684ad6d91ebbd 549 PANTHER PTHR32182:SF12 1 548 3.3E-173 T 14-09-2016 PAJ_RS02630 cc8a7df55ef4d4569d4c4767fefe3883 183 PIRSF PIRSF019401 1 183 3.0E-55 T 14-09-2016 IPR005621 Negative modulator of initiation of replicationr SeqA GO:0003677|GO:0032297 PAJ_RS02630 cc8a7df55ef4d4569d4c4767fefe3883 183 Gene3D G3DSA:1.10.1220.10 1 40 1.2E-27 T 14-09-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 PAJ_RS02630 cc8a7df55ef4d4569d4c4767fefe3883 183 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 183 44.681 T 14-09-2016 IPR005621 Negative modulator of initiation of replicationr SeqA GO:0003677|GO:0032297 PAJ_RS02630 cc8a7df55ef4d4569d4c4767fefe3883 183 Gene3D G3DSA:1.20.1380.10 70 183 2.2E-53 T 14-09-2016 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 PAJ_RS02630 cc8a7df55ef4d4569d4c4767fefe3883 183 SUPERFAMILY SSF82808 68 183 2.48E-48 T 14-09-2016 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 PAJ_RS02630 cc8a7df55ef4d4569d4c4767fefe3883 183 Pfam PF03925 SeqA protein C-terminal domain 73 181 1.3E-48 T 14-09-2016 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 PAJ_RS02630 cc8a7df55ef4d4569d4c4767fefe3883 183 SUPERFAMILY SSF47598 1 35 3.56E-14 T 14-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 PAJ_RS04095 b428b46a05573bc53c3c1ee24a250dba 141 PANTHER PTHR38107 1 141 1.4E-47 T 14-09-2016 PAJ_RS04095 b428b46a05573bc53c3c1ee24a250dba 141 Pfam PF00959 Phage lysozyme 28 133 1.4E-26 T 14-09-2016 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 PAJ_RS04095 b428b46a05573bc53c3c1ee24a250dba 141 SUPERFAMILY SSF53955 1 140 1.69E-54 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS04095 b428b46a05573bc53c3c1ee24a250dba 141 PANTHER PTHR38107:SF2 1 141 1.4E-47 T 14-09-2016 PAJ_RS04095 b428b46a05573bc53c3c1ee24a250dba 141 Gene3D G3DSA:1.10.530.40 3 140 1.3E-58 T 14-09-2016 IPR023347 Lysozyme domain GO:0003796 PAJ_RS01125 3b3167a1bc6ae54c26546125c3bad301 355 Gene3D G3DSA:3.40.50.2300 156 291 1.0E-18 T 14-09-2016 PAJ_RS01125 3b3167a1bc6ae54c26546125c3bad301 355 Gene3D G3DSA:3.40.50.2300 34 155 9.2E-23 T 14-09-2016 PAJ_RS01125 3b3167a1bc6ae54c26546125c3bad301 355 Pfam PF13407 Periplasmic binding protein domain 50 298 3.8E-29 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS01125 3b3167a1bc6ae54c26546125c3bad301 355 SUPERFAMILY SSF53822 38 309 2.36E-43 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS19075 632bcc7505f3a4fb3236ad4fce8f8308 231 PANTHER PTHR30249:SF4 1 229 3.8E-122 T 14-09-2016 PAJ_RS19075 632bcc7505f3a4fb3236ad4fce8f8308 231 PANTHER PTHR30249 1 229 3.8E-122 T 14-09-2016 PAJ_RS19075 632bcc7505f3a4fb3236ad4fce8f8308 231 Pfam PF04172 LrgB-like family 14 225 1.0E-67 T 14-09-2016 IPR007300 CidB/LrgB family PAJ_RS05550 a76e346727bcbe9f4ce3bfc051a2defb 258 PANTHER PTHR13832:SF226 1 217 1.3E-25 T 14-09-2016 PAJ_RS05550 a76e346727bcbe9f4ce3bfc051a2defb 258 Gene3D G3DSA:3.60.40.10 2 234 1.1E-43 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS05550 a76e346727bcbe9f4ce3bfc051a2defb 258 SMART SM00332 1 233 1.1E-6 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS05550 a76e346727bcbe9f4ce3bfc051a2defb 258 SMART SM00331 19 235 7.8E-4 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS05550 a76e346727bcbe9f4ce3bfc051a2defb 258 Pfam PF13672 Protein phosphatase 2C 7 217 2.4E-13 T 14-09-2016 PAJ_RS05550 a76e346727bcbe9f4ce3bfc051a2defb 258 PANTHER PTHR13832 1 217 1.3E-25 T 14-09-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 PAJ_RS05550 a76e346727bcbe9f4ce3bfc051a2defb 258 SUPERFAMILY SSF81606 1 235 3.53E-41 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS05560 0435af6838d43b784a856c4937339bd5 232 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 8 140 6.7E-45 T 14-09-2016 IPR017748 Type VI secretion system-associated, BMAA0400 PAJ_RS05560 0435af6838d43b784a856c4937339bd5 232 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 8 141 1.2E-34 T 14-09-2016 IPR017748 Type VI secretion system-associated, BMAA0400 PAJ_RS05560 0435af6838d43b784a856c4937339bd5 232 Gene3D G3DSA:3.40.1730.10 6 226 3.6E-69 T 14-09-2016 PAJ_RS05560 0435af6838d43b784a856c4937339bd5 232 PIRSF PIRSF029287 2 221 2.6E-44 T 14-09-2016 IPR017748 Type VI secretion system-associated, BMAA0400 PAJ_RS18885 c227d4bc001d5122c36b76e9eb5345eb 270 SUPERFAMILY SSF53649 2 252 2.76E-43 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PAJ_RS18885 c227d4bc001d5122c36b76e9eb5345eb 270 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 3 208 3.3E-13 T 14-09-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 PAJ_RS18885 c227d4bc001d5122c36b76e9eb5345eb 270 Gene3D G3DSA:3.40.720.10 2 227 2.2E-33 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PAJ_RS06175 8dcddba7575cae5bb79a4f6ebb0778c5 286 Pfam PF08543 Phosphomethylpyrimidine kinase 74 263 2.4E-15 T 14-09-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 PAJ_RS06175 8dcddba7575cae5bb79a4f6ebb0778c5 286 PANTHER PTHR10534:SF0 1 286 4.1E-135 T 14-09-2016 PAJ_RS06175 8dcddba7575cae5bb79a4f6ebb0778c5 286 SUPERFAMILY SSF53613 2 280 3.9E-76 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS06175 8dcddba7575cae5bb79a4f6ebb0778c5 286 Gene3D G3DSA:3.40.1190.20 2 285 9.7E-90 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS06175 8dcddba7575cae5bb79a4f6ebb0778c5 286 PANTHER PTHR10534 1 286 4.1E-135 T 14-09-2016 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PAJ_RS06175 8dcddba7575cae5bb79a4f6ebb0778c5 286 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 2 286 1.3E-130 T 14-09-2016 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PAJ_RS06175 8dcddba7575cae5bb79a4f6ebb0778c5 286 Hamap MF_01639 Pyridoxamine kinase [pdxY]. 1 286 53.745 T 14-09-2016 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PAJ_RS01625 053157d855dfb9a0a79a6245eb69fa9a 80 Pfam PF02609 Exonuclease VII small subunit 11 61 1.2E-20 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PAJ_RS01625 053157d855dfb9a0a79a6245eb69fa9a 80 PANTHER PTHR34137 1 80 1.3E-26 T 14-09-2016 PAJ_RS01625 053157d855dfb9a0a79a6245eb69fa9a 80 Gene3D G3DSA:1.10.287.1040 7 77 2.1E-28 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PAJ_RS01625 053157d855dfb9a0a79a6245eb69fa9a 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 50 1.0E-16 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PAJ_RS01625 053157d855dfb9a0a79a6245eb69fa9a 80 SUPERFAMILY SSF116842 3 69 1.96E-21 T 14-09-2016 PAJ_RS01625 053157d855dfb9a0a79a6245eb69fa9a 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 10 65 1.6E-23 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PAJ_RS01625 053157d855dfb9a0a79a6245eb69fa9a 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 16.57 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PAJ_RS01625 053157d855dfb9a0a79a6245eb69fa9a 80 PIRSF PIRSF006488 1 80 8.4E-25 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PAJ_RS09930 11557a43f18740d9dbe54f09ce3711a4 344 PANTHER PTHR12526 128 344 2.0E-45 T 14-09-2016 PAJ_RS09930 11557a43f18740d9dbe54f09ce3711a4 344 Pfam PF00534 Glycosyl transferases group 1 171 324 1.2E-35 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 PAJ_RS09930 11557a43f18740d9dbe54f09ce3711a4 344 SUPERFAMILY SSF53756 3 343 1.57E-59 T 14-09-2016 PAJ_RS09930 11557a43f18740d9dbe54f09ce3711a4 344 Gene3D G3DSA:3.40.50.2000 176 324 3.7E-26 T 14-09-2016 PAJ_RS04550 c5582a9ab9fc9fc7cffe97cafb7d0420 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 8.0E-4 T 14-09-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 PAJ_RS04550 c5582a9ab9fc9fc7cffe97cafb7d0420 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.738 T 14-09-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 PAJ_RS04550 c5582a9ab9fc9fc7cffe97cafb7d0420 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 14-09-2016 IPR006162 Phosphopantetheine attachment site PAJ_RS04550 c5582a9ab9fc9fc7cffe97cafb7d0420 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 4.8E-17 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS04550 c5582a9ab9fc9fc7cffe97cafb7d0420 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 77 6.5E-38 T 14-09-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 PAJ_RS04550 c5582a9ab9fc9fc7cffe97cafb7d0420 78 Gene3D G3DSA:1.10.1200.10 3 76 2.9E-37 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS04550 c5582a9ab9fc9fc7cffe97cafb7d0420 78 PANTHER PTHR20863 3 76 2.4E-33 T 14-09-2016 PAJ_RS04550 c5582a9ab9fc9fc7cffe97cafb7d0420 78 SUPERFAMILY SSF47336 1 76 6.15E-25 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS13200 c8f02347f21242f7ac792aa088b061c8 175 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.0E-7 T 14-09-2016 IPR020476 NUDIX hydrolase PAJ_RS13200 c8f02347f21242f7ac792aa088b061c8 175 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.0E-7 T 14-09-2016 IPR020476 NUDIX hydrolase PAJ_RS13200 c8f02347f21242f7ac792aa088b061c8 175 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.671 T 14-09-2016 IPR022927 RNA pyrophosphohydrolase RppH PAJ_RS13200 c8f02347f21242f7ac792aa088b061c8 175 Pfam PF00293 NUDIX domain 7 146 1.1E-27 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS13200 c8f02347f21242f7ac792aa088b061c8 175 Gene3D G3DSA:3.90.79.10 3 151 1.4E-32 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS13200 c8f02347f21242f7ac792aa088b061c8 175 PANTHER PTHR23114 1 165 1.2E-68 T 14-09-2016 PAJ_RS13200 c8f02347f21242f7ac792aa088b061c8 175 SUPERFAMILY SSF55811 3 151 2.57E-32 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS13200 c8f02347f21242f7ac792aa088b061c8 175 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PAJ_RS15590 cd040cb3d8434c764473aaea71537262 481 Pfam PF00474 Sodium:solute symporter family 36 432 9.5E-125 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS15590 cd040cb3d8434c764473aaea71537262 481 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 155 180 - T 14-09-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 PAJ_RS15590 cd040cb3d8434c764473aaea71537262 481 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 414 434 - T 14-09-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 PAJ_RS15590 cd040cb3d8434c764473aaea71537262 481 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 432 4.4E-101 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS15590 cd040cb3d8434c764473aaea71537262 481 PANTHER PTHR11819:SF125 2 471 6.5E-258 T 14-09-2016 PAJ_RS15590 cd040cb3d8434c764473aaea71537262 481 PANTHER PTHR11819 2 471 6.5E-258 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS15590 cd040cb3d8434c764473aaea71537262 481 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 4 470 3.8E-217 T 14-09-2016 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0031402|GO:0071436 PAJ_RS20265 e8af961224e106f67c94ffe88a066425 451 SUPERFAMILY SSF116734 7 217 5.07E-34 T 14-09-2016 PAJ_RS20265 e8af961224e106f67c94ffe88a066425 451 PANTHER PTHR30408:SF6 66 435 9.2E-26 T 14-09-2016 PAJ_RS20265 e8af961224e106f67c94ffe88a066425 451 Pfam PF01420 Type I restriction modification DNA specificity domain 298 402 5.7E-8 T 14-09-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 PAJ_RS20265 e8af961224e106f67c94ffe88a066425 451 Pfam PF01420 Type I restriction modification DNA specificity domain 22 195 2.4E-5 T 14-09-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 PAJ_RS20265 e8af961224e106f67c94ffe88a066425 451 PANTHER PTHR30408 66 435 9.2E-26 T 14-09-2016 PAJ_RS20265 e8af961224e106f67c94ffe88a066425 451 SUPERFAMILY SSF116734 216 435 3.92E-38 T 14-09-2016 PAJ_RS12410 7b7353fda0d983fa6b75601589fead23 332 Pfam PF01497 Periplasmic binding protein 43 307 3.0E-38 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 PAJ_RS12410 7b7353fda0d983fa6b75601589fead23 332 PANTHER PTHR30535:SF7 7 324 1.2E-33 T 14-09-2016 PAJ_RS12410 7b7353fda0d983fa6b75601589fead23 332 PANTHER PTHR30535 7 324 1.2E-33 T 14-09-2016 PAJ_RS12410 7b7353fda0d983fa6b75601589fead23 332 Gene3D G3DSA:3.40.50.1980 40 180 3.2E-13 T 14-09-2016 PAJ_RS12410 7b7353fda0d983fa6b75601589fead23 332 SUPERFAMILY SSF53807 40 326 9.42E-42 T 14-09-2016 PAJ_RS12410 7b7353fda0d983fa6b75601589fead23 332 Gene3D G3DSA:3.40.50.1980 181 326 1.8E-26 T 14-09-2016 PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 PANTHER PTHR24220:SF416 8 380 2.6E-190 T 14-09-2016 PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 SUPERFAMILY SSF52540 271 480 1.2E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 Pfam PF00005 ABC transporter 273 425 9.5E-21 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 Pfam PF00005 ABC transporter 22 171 2.0E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 PANTHER PTHR24220 8 380 2.6E-190 T 14-09-2016 PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 SUPERFAMILY SSF52540 4 231 4.9E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 Gene3D G3DSA:3.40.50.300 274 490 4.1E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 Gene3D G3DSA:3.40.50.300 3 237 8.1E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 SMART SM00382 280 474 1.9E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS09365 351124daf1a7c912086c216574087f5b 504 SMART SM00382 31 218 3.0E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 PRINTS PR01035 Tetracycline resistance protein signature 115 136 4.3E-12 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 PRINTS PR01035 Tetracycline resistance protein signature 26 42 4.3E-12 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 PRINTS PR01035 Tetracycline resistance protein signature 88 112 4.3E-12 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 PRINTS PR01035 Tetracycline resistance protein signature 145 167 4.3E-12 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 PRINTS PR01035 Tetracycline resistance protein signature 350 373 4.3E-12 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 PANTHER PTHR23504:SF11 1 385 9.7E-78 T 14-09-2016 PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 PANTHER PTHR23504 1 385 9.7E-78 T 14-09-2016 PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 SUPERFAMILY SSF103473 12 403 1.31E-65 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 Gene3D G3DSA:1.20.1250.20 14 201 1.8E-35 T 14-09-2016 PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 Gene3D G3DSA:1.20.1250.20 223 402 1.3E-30 T 14-09-2016 PAJ_RS19195 e1f1915b4ab24480ed545c7261c7fdae 407 Pfam PF07690 Major Facilitator Superfamily 21 304 1.5E-38 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 106 134 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 Gene3D G3DSA:2.160.10.10 168 337 5.5E-30 T 14-09-2016 PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 326 35.965 T 14-09-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 Gene3D G3DSA:2.160.10.10 76 167 8.5E-24 T 14-09-2016 PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 144 1.7E-10 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 255 7.0E-7 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 146 179 6.9E-8 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 130 158 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 PANTHER PTHR22572 61 295 2.0E-67 T 14-09-2016 PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 100 128 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 89 2.4E-22 T 14-09-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 SUPERFAMILY SSF51161 32 316 6.49E-89 T 14-09-2016 IPR011004 Trimeric LpxA-like PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 259 285 0.22 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 2.7E-127 T 14-09-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 PAJ_RS00740 9b3509748f44d6c2dc453ec2ba881f7e 341 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 225 253 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS17210 639973ea6b1547c3c2661453905b618e 310 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 236 1.2E-43 T 14-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PAJ_RS17210 639973ea6b1547c3c2661453905b618e 310 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 309 57.902 T 14-09-2016 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20|UniPathway: UPA00356 PAJ_RS17210 639973ea6b1547c3c2661453905b618e 310 Gene3D G3DSA:3.90.25.10 172 291 4.2E-37 T 14-09-2016 PAJ_RS17210 639973ea6b1547c3c2661453905b618e 310 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 308 1.6E-135 T 14-09-2016 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20|UniPathway: UPA00356 PAJ_RS17210 639973ea6b1547c3c2661453905b618e 310 PANTHER PTHR10366 1 308 2.7E-119 T 14-09-2016 PAJ_RS17210 639973ea6b1547c3c2661453905b618e 310 PANTHER PTHR10366:SF469 1 308 2.7E-119 T 14-09-2016 PAJ_RS17210 639973ea6b1547c3c2661453905b618e 310 SUPERFAMILY SSF51735 1 305 8.39E-65 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS17210 639973ea6b1547c3c2661453905b618e 310 Gene3D G3DSA:3.40.50.720 2 171 2.6E-24 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 173 6.5E-15 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 Pfam PF00672 HAMP domain 190 257 6.5E-16 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 SMART SM00283 263 510 3.9E-77 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 SUPERFAMILY SSF58104 230 511 7.32E-67 T 14-09-2016 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 Gene3D G3DSA:1.10.287.950 277 482 5.3E-55 T 14-09-2016 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 PANTHER PTHR32089:SF63 152 513 4.6E-133 T 14-09-2016 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 315 509 3.0E-53 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 SMART SM00304 210 262 7.2E-11 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 390 419 5.9E-49 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 361 388 5.9E-49 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 438 467 5.9E-49 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 186 206 5.9E-49 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 284 313 5.9E-49 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS05035 9fc923274cba9f258f526f70d126842f 550 PANTHER PTHR32089 152 513 4.6E-133 T 14-09-2016 PAJ_RS18200 2edcea27c4c16314f931a31c1ece63c3 334 PRINTS PR00735 Glycosyl hydrolase family 8 signature 50 63 3.3E-26 T 14-09-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PAJ_RS18200 2edcea27c4c16314f931a31c1ece63c3 334 PRINTS PR00735 Glycosyl hydrolase family 8 signature 108 126 3.3E-26 T 14-09-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PAJ_RS18200 2edcea27c4c16314f931a31c1ece63c3 334 PRINTS PR00735 Glycosyl hydrolase family 8 signature 237 246 3.3E-26 T 14-09-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PAJ_RS18200 2edcea27c4c16314f931a31c1ece63c3 334 PRINTS PR00735 Glycosyl hydrolase family 8 signature 172 189 3.3E-26 T 14-09-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PAJ_RS18200 2edcea27c4c16314f931a31c1ece63c3 334 PRINTS PR00735 Glycosyl hydrolase family 8 signature 212 223 3.3E-26 T 14-09-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PAJ_RS18200 2edcea27c4c16314f931a31c1ece63c3 334 PRINTS PR00735 Glycosyl hydrolase family 8 signature 317 331 3.3E-26 T 14-09-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PAJ_RS18200 2edcea27c4c16314f931a31c1ece63c3 334 Pfam PF01270 Glycosyl hydrolases family 8 12 330 1.6E-102 T 14-09-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PAJ_RS18200 2edcea27c4c16314f931a31c1ece63c3 334 SUPERFAMILY SSF48208 21 332 2.93E-86 T 14-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 PAJ_RS18200 2edcea27c4c16314f931a31c1ece63c3 334 Gene3D G3DSA:1.50.10.10 20 332 7.2E-76 T 14-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 Gene3D G3DSA:3.60.20.10 21 437 1.2E-102 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 PANTHER PTHR11938 10 774 0.0 T 14-09-2016 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 Pfam PF04898 Glutamate synthase central domain 461 739 2.1E-73 T 14-09-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 SUPERFAMILY SSF51395 1007 1332 1.83E-157 T 14-09-2016 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 SUPERFAMILY SSF51395 455 853 1.83E-157 T 14-09-2016 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 SUPERFAMILY SSF56235 21 429 8.71E-91 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 Gene3D G3DSA:2.160.20.60 1402 1651 1.0E-67 T 14-09-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 Gene3D G3DSA:3.20.20.70 1004 1356 6.6E-140 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 PANTHER PTHR11938:SF1 921 930 0.0 T 14-09-2016 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 Pfam PF01493 GXGXG motif 1432 1598 1.5E-51 T 14-09-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 PANTHER PTHR11938:SF1 961 1418 0.0 T 14-09-2016 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 PANTHER PTHR11938 921 930 0.0 T 14-09-2016 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 PANTHER PTHR11938 961 1418 0.0 T 14-09-2016 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 PANTHER PTHR11938 1443 1658 0.0 T 14-09-2016 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 PANTHER PTHR11938:SF1 10 774 0.0 T 14-09-2016 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 PANTHER PTHR11938:SF1 1443 1658 0.0 T 14-09-2016 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 Pfam PF01645 Conserved region in glutamate synthase 998 1315 6.8E-102 T 14-09-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 Pfam PF00310 Glutamine amidotransferases class-II 21 424 3.3E-85 T 14-09-2016 IPR017932 Glutamine amidotransferase type 2 domain PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 SUPERFAMILY SSF69336 1433 1649 2.22E-66 T 14-09-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 PAJ_RS19710 4ed6033a1960920124206e96f446ac7e 1843 Gene3D G3DSA:3.20.20.70 454 783 4.0E-66 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS10550 0207bd3aa43f34858f612fb1a6e721f7 107 PANTHER PTHR35893 4 107 1.8E-59 T 14-09-2016 PAJ_RS10550 0207bd3aa43f34858f612fb1a6e721f7 107 Pfam PF05957 Bacterial protein of unknown function (DUF883) 17 107 3.3E-28 T 14-09-2016 IPR010279 Protein of unknown function DUF883, ElaB PAJ_RS10550 0207bd3aa43f34858f612fb1a6e721f7 107 PANTHER PTHR35893:SF1 4 107 1.8E-59 T 14-09-2016 PAJ_RS20110 fa74a0aa7068e8b1514f1c81d7277e80 366 PANTHER PTHR33529:SF2 2 362 1.1E-131 T 14-09-2016 PAJ_RS20110 fa74a0aa7068e8b1514f1c81d7277e80 366 PANTHER PTHR33529 2 362 1.1E-131 T 14-09-2016 PAJ_RS20110 fa74a0aa7068e8b1514f1c81d7277e80 366 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 348 3.6E-117 T 14-09-2016 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 PAJ_RS20110 fa74a0aa7068e8b1514f1c81d7277e80 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 345 1.6E-71 T 14-09-2016 IPR005495 Permease LptG/LptF-related GO:0016021 PAJ_RS19240 23f83510e937ef4bcd54490ece51411a 290 Gene3D G3DSA:1.10.3720.10 56 283 3.4E-57 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS19240 23f83510e937ef4bcd54490ece51411a 290 SUPERFAMILY SSF161098 51 278 1.7E-56 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS19240 23f83510e937ef4bcd54490ece51411a 290 PANTHER PTHR30193 4 289 3.5E-82 T 14-09-2016 PAJ_RS19240 23f83510e937ef4bcd54490ece51411a 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 278 2.2E-16 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS19240 23f83510e937ef4bcd54490ece51411a 290 PANTHER PTHR30193:SF6 4 289 3.5E-82 T 14-09-2016 PAJ_RS19240 23f83510e937ef4bcd54490ece51411a 290 SUPERFAMILY SSF160964 10 51 6.02E-5 T 14-09-2016 PAJ_RS01185 410ea12ef0e8d351bd32f7a93a4c48e2 239 Pfam PF00717 Peptidase S24-like 149 215 3.2E-8 T 14-09-2016 IPR019759 Peptidase S24/S26A/S26B PAJ_RS01185 410ea12ef0e8d351bd32f7a93a4c48e2 239 SUPERFAMILY SSF51306 138 228 3.14E-14 T 14-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PAJ_RS01185 410ea12ef0e8d351bd32f7a93a4c48e2 239 Gene3D G3DSA:2.10.109.10 125 229 3.6E-12 T 14-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PAJ_RS01185 410ea12ef0e8d351bd32f7a93a4c48e2 239 Gene3D G3DSA:1.10.260.40 11 80 3.7E-8 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS06030 0ba9f3b8afa53fe72f396caf241f740a 403 SMART SM00052 155 394 2.7E-42 T 14-09-2016 IPR001633 EAL domain PAJ_RS06030 0ba9f3b8afa53fe72f396caf241f740a 403 SMART SM01034 2 94 7.6E-32 T 14-09-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 PAJ_RS06030 0ba9f3b8afa53fe72f396caf241f740a 403 PANTHER PTHR33121:SF15 1 397 1.6E-147 T 14-09-2016 PAJ_RS06030 0ba9f3b8afa53fe72f396caf241f740a 403 PANTHER PTHR33121 1 397 1.6E-147 T 14-09-2016 PAJ_RS06030 0ba9f3b8afa53fe72f396caf241f740a 403 Gene3D G3DSA:3.20.20.450 167 389 1.1E-49 T 14-09-2016 IPR001633 EAL domain PAJ_RS06030 0ba9f3b8afa53fe72f396caf241f740a 403 SUPERFAMILY SSF54975 1 132 1.44E-33 T 14-09-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 PAJ_RS06030 0ba9f3b8afa53fe72f396caf241f740a 403 Pfam PF00563 EAL domain 166 389 4.6E-48 T 14-09-2016 IPR001633 EAL domain PAJ_RS06030 0ba9f3b8afa53fe72f396caf241f740a 403 Pfam PF04940 Sensors of blue-light using FAD 2 92 2.7E-24 T 14-09-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 PAJ_RS06030 0ba9f3b8afa53fe72f396caf241f740a 403 SUPERFAMILY SSF141868 166 389 4.05E-54 T 14-09-2016 IPR001633 EAL domain PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 SUPERFAMILY SSF52540 3 230 7.66E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 PANTHER PTHR24220 6 378 2.3E-208 T 14-09-2016 PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 Gene3D G3DSA:3.40.50.300 2 235 1.1E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 PANTHER PTHR24220:SF416 6 378 2.3E-208 T 14-09-2016 PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 Pfam PF00005 ABC transporter 20 169 2.9E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 Pfam PF00005 ABC transporter 268 423 5.9E-24 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 Gene3D G3DSA:3.40.50.300 255 491 9.6E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 SUPERFAMILY SSF52540 243 483 1.81E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 SMART SM00382 29 219 1.7E-5 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS17555 4e0c16cdcbc8a27361d566b0f1128fe6 502 SMART SM00382 277 472 3.5E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16690 463e810d7420d5c1b45ed4d90247f28b 560 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 556 6.4E-264 T 14-09-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 PAJ_RS16690 463e810d7420d5c1b45ed4d90247f28b 560 PANTHER PTHR30607 2 560 0.0 T 14-09-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 PAJ_RS16690 463e810d7420d5c1b45ed4d90247f28b 560 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 556 35.325 T 14-09-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 PAJ_RS16690 463e810d7420d5c1b45ed4d90247f28b 560 PIRSF PIRSF001294 1 558 6.9E-237 T 14-09-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 PAJ_RS16690 463e810d7420d5c1b45ed4d90247f28b 560 Pfam PF03814 Potassium-transporting ATPase A subunit 11 554 3.0E-241 T 14-09-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 PAJ_RS06625 5fe0349088c853358b46cc1e99a31e04 155 PANTHER PTHR33639 5 155 3.6E-52 T 14-09-2016 PAJ_RS06625 5fe0349088c853358b46cc1e99a31e04 155 Pfam PF04134 Protein of unknown function, DUF393 14 123 1.4E-30 T 14-09-2016 IPR007263 Protein of unknown function DUF393 PAJ_RS06625 5fe0349088c853358b46cc1e99a31e04 155 PANTHER PTHR33639:SF3 5 155 3.6E-52 T 14-09-2016 PAJ_RS15785 85c8948e364eb15bf958924299233f1d 130 Gene3D G3DSA:3.30.1370.30 2 72 1.4E-26 T 14-09-2016 PAJ_RS15785 85c8948e364eb15bf958924299233f1d 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 14-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15785 85c8948e364eb15bf958924299233f1d 130 SUPERFAMILY SSF56047 2 129 2.49E-45 T 14-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15785 85c8948e364eb15bf958924299233f1d 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.582 T 14-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15785 85c8948e364eb15bf958924299233f1d 130 Pfam PF00410 Ribosomal protein S8 5 129 7.0E-48 T 14-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15785 85c8948e364eb15bf958924299233f1d 130 Gene3D G3DSA:3.30.1490.10 74 129 9.7E-29 T 14-09-2016 PAJ_RS15785 85c8948e364eb15bf958924299233f1d 130 PANTHER PTHR11758 1 130 2.1E-62 T 14-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 PAJ_RS17415 259efc776baf38de339f212b3f094ab7 459 TIGRFAM TIGR03173 pbuX: xanthine permease 36 454 2.9E-125 T 14-09-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 PAJ_RS17415 259efc776baf38de339f212b3f094ab7 459 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 24 452 2.6E-138 T 14-09-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PAJ_RS17415 259efc776baf38de339f212b3f094ab7 459 PANTHER PTHR11119 1 457 4.4E-272 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS17415 259efc776baf38de339f212b3f094ab7 459 PANTHER PTHR11119:SF44 1 457 4.4E-272 T 14-09-2016 PAJ_RS17415 259efc776baf38de339f212b3f094ab7 459 Pfam PF00860 Permease family 29 421 6.9E-107 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS17415 259efc776baf38de339f212b3f094ab7 459 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 370 390 - T 14-09-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PAJ_RS20430 580c1e11f1207ac4aafcc349431ca3cf 453 Gene3D G3DSA:3.30.300.30 345 451 4.4E-12 T 14-09-2016 PAJ_RS20430 580c1e11f1207ac4aafcc349431ca3cf 453 SUPERFAMILY SSF56801 15 451 2.88E-51 T 14-09-2016 PAJ_RS20430 580c1e11f1207ac4aafcc349431ca3cf 453 Pfam PF00501 AMP-binding enzyme 129 289 1.3E-9 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PAJ_RS20430 580c1e11f1207ac4aafcc349431ca3cf 453 Gene3D G3DSA:3.40.50.980 135 290 2.3E-14 T 14-09-2016 PAJ_RS10220 104ae6cc190f32dba938cc2acb8284aa 350 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 16 348 8.6E-118 T 14-09-2016 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 PAJ_RS10220 104ae6cc190f32dba938cc2acb8284aa 350 Pfam PF03601 Conserved hypothetical protein 698 17 326 8.1E-103 T 14-09-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 PAJ_RS10220 104ae6cc190f32dba938cc2acb8284aa 350 PANTHER PTHR30106 11 350 2.1E-120 T 14-09-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 PAJ_RS10220 104ae6cc190f32dba938cc2acb8284aa 350 PANTHER PTHR30106:SF2 11 350 2.1E-120 T 14-09-2016 PAJ_RS04270 405f3e8c845b0fd25223fa8c7c8b630d 86 ProDom PD865043 PLASMID SPA-ORF10 3'REGION CYTOPLASMIC ORF-10 SPAS STY1854 25 83 3.0E-13 T 14-09-2016 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 PAJ_RS04270 405f3e8c845b0fd25223fa8c7c8b630d 86 Pfam PF10798 Biofilm development protein YmgB/AriR 25 83 9.8E-28 T 14-09-2016 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 PAJ_RS14980 01bb63e6292ff655c93b539072979915 482 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 205 456 9.8E-56 T 14-09-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 PAJ_RS14980 01bb63e6292ff655c93b539072979915 482 Gene3D G3DSA:1.10.1040.10 271 480 5.0E-63 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PAJ_RS14980 01bb63e6292ff655c93b539072979915 482 PANTHER PTHR30524 2 482 1.7E-252 T 14-09-2016 PAJ_RS14980 01bb63e6292ff655c93b539072979915 482 SUPERFAMILY SSF48179 272 480 1.94E-48 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PAJ_RS14980 01bb63e6292ff655c93b539072979915 482 Gene3D G3DSA:3.40.50.720 3 251 2.3E-66 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS14980 01bb63e6292ff655c93b539072979915 482 PANTHER PTHR30524:SF1 2 482 1.7E-252 T 14-09-2016 PAJ_RS14980 01bb63e6292ff655c93b539072979915 482 SUPERFAMILY SSF51735 3 252 3.46E-62 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS14980 01bb63e6292ff655c93b539072979915 482 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 17 172 9.3E-27 T 14-09-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 PAJ_RS05830 ac9074a3484d942ef788a88c8f9c1c35 275 PANTHER PTHR31756 1 275 2.3E-123 T 14-09-2016 PAJ_RS05830 ac9074a3484d942ef788a88c8f9c1c35 275 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 4 274 74.558 T 14-09-2016 IPR026530 Phosphoenolpyruvate synthase regulatory protein PAJ_RS05830 ac9074a3484d942ef788a88c8f9c1c35 275 PANTHER PTHR31756:SF3 1 275 2.3E-123 T 14-09-2016 PAJ_RS05830 ac9074a3484d942ef788a88c8f9c1c35 275 Pfam PF03618 Kinase/pyrophosphorylase 7 265 2.1E-72 T 14-09-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 PAJ_RS00715 70722ecebb349581ed1451a47f711689 250 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 16 244 39.709 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PAJ_RS00715 70722ecebb349581ed1451a47f711689 250 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 189 206 - T 14-09-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 PAJ_RS00715 70722ecebb349581ed1451a47f711689 250 PANTHER PTHR10291 17 246 7.1E-118 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PAJ_RS00715 70722ecebb349581ed1451a47f711689 250 Pfam PF01255 Putative undecaprenyl diphosphate synthase 23 243 2.2E-78 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PAJ_RS00715 70722ecebb349581ed1451a47f711689 250 Gene3D G3DSA:3.40.1180.10 12 244 6.6E-96 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PAJ_RS00715 70722ecebb349581ed1451a47f711689 250 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 17 243 2.5E-99 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PAJ_RS00715 70722ecebb349581ed1451a47f711689 250 SUPERFAMILY SSF64005 14 239 2.62E-86 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PAJ_RS04710 b94c5f47de2d55c1f5a95c2c23638e19 219 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 76 90 - T 14-09-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 PAJ_RS04710 b94c5f47de2d55c1f5a95c2c23638e19 219 PANTHER PTHR21600 8 142 4.8E-89 T 14-09-2016 PAJ_RS04710 b94c5f47de2d55c1f5a95c2c23638e19 219 PANTHER PTHR21600 160 216 4.8E-89 T 14-09-2016 PAJ_RS04710 b94c5f47de2d55c1f5a95c2c23638e19 219 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 45 216 1.6E-57 T 14-09-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 PAJ_RS04710 b94c5f47de2d55c1f5a95c2c23638e19 219 PANTHER PTHR21600:SF23 8 142 4.8E-89 T 14-09-2016 PAJ_RS04710 b94c5f47de2d55c1f5a95c2c23638e19 219 PANTHER PTHR21600:SF23 160 216 4.8E-89 T 14-09-2016 PAJ_RS04710 b94c5f47de2d55c1f5a95c2c23638e19 219 Pfam PF00849 RNA pseudouridylate synthase 42 186 3.3E-12 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS04710 b94c5f47de2d55c1f5a95c2c23638e19 219 SUPERFAMILY SSF55120 40 216 4.0E-40 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS01930 ffeabb25203ab888fda35f908ea6757a 267 Pfam PF01963 TraB family 28 265 8.6E-39 T 14-09-2016 IPR002816 Pheromone shutdown, TraB PAJ_RS01930 ffeabb25203ab888fda35f908ea6757a 267 PANTHER PTHR40590 1 267 7.2E-88 T 14-09-2016 PAJ_RS02985 7f835066a8abeb794bb3fa299755c91c 328 Pfam PF04055 Radical SAM superfamily 18 180 7.9E-28 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS02985 7f835066a8abeb794bb3fa299755c91c 328 SMART SM00729 13 218 1.8E-4 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PAJ_RS02985 7f835066a8abeb794bb3fa299755c91c 328 PANTHER PTHR22960 4 284 1.2E-133 T 14-09-2016 PAJ_RS02985 7f835066a8abeb794bb3fa299755c91c 328 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 5 328 2.9E-107 T 14-09-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS02985 7f835066a8abeb794bb3fa299755c91c 328 Pfam PF13353 4Fe-4S single cluster domain 22 124 1.8E-7 T 14-09-2016 PAJ_RS02985 7f835066a8abeb794bb3fa299755c91c 328 Gene3D G3DSA:3.20.20.70 3 303 3.2E-72 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS02985 7f835066a8abeb794bb3fa299755c91c 328 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 4 328 37.951 T 14-09-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS02985 7f835066a8abeb794bb3fa299755c91c 328 Pfam PF06463 Molybdenum Cofactor Synthesis C 185 311 8.5E-39 T 14-09-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS02985 7f835066a8abeb794bb3fa299755c91c 328 SUPERFAMILY SSF102114 4 277 4.19E-71 T 14-09-2016 PAJ_RS02985 7f835066a8abeb794bb3fa299755c91c 328 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 14-09-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PAJ_RS18705 b91a48b924a0ab5fba260e49571500d3 640 PANTHER PTHR30557 199 632 0.0 T 14-09-2016 PAJ_RS18705 b91a48b924a0ab5fba260e49571500d3 640 Pfam PF13667 ThiC-associated domain 28 109 6.9E-33 T 14-09-2016 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 PAJ_RS18705 b91a48b924a0ab5fba260e49571500d3 640 PANTHER PTHR30557:SF1 141 171 0.0 T 14-09-2016 PAJ_RS18705 b91a48b924a0ab5fba260e49571500d3 640 PANTHER PTHR30557:SF1 199 632 0.0 T 14-09-2016 PAJ_RS18705 b91a48b924a0ab5fba260e49571500d3 640 PANTHER PTHR30557:SF1 3 107 0.0 T 14-09-2016 PAJ_RS18705 b91a48b924a0ab5fba260e49571500d3 640 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 148 602 56.446 T 14-09-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 PAJ_RS18705 b91a48b924a0ab5fba260e49571500d3 640 Pfam PF01964 Radical SAM ThiC family 149 597 4.1E-199 T 14-09-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 PAJ_RS18705 b91a48b924a0ab5fba260e49571500d3 640 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 148 600 3.5E-223 T 14-09-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 PAJ_RS18705 b91a48b924a0ab5fba260e49571500d3 640 PANTHER PTHR30557 141 171 0.0 T 14-09-2016 PAJ_RS18705 b91a48b924a0ab5fba260e49571500d3 640 PANTHER PTHR30557 3 107 0.0 T 14-09-2016 PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 Gene3D G3DSA:2.160.10.10 89 255 4.4E-64 T 14-09-2016 PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 PANTHER PTHR19136 13 273 9.5E-135 T 14-09-2016 PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 Gene3D G3DSA:1.10.166.10 1 70 3.8E-32 T 14-09-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 3.4E-13 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 1.4E-25 T 14-09-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 273 1.4E-160 T 14-09-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 SUPERFAMILY SSF51161 1 256 5.54E-79 T 14-09-2016 IPR011004 Trimeric LpxA-like PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 166 6.7E-4 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 PANTHER PTHR19136:SF52 13 273 9.5E-135 T 14-09-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 PAJ_RS00675 f2180a6dac8bb71b7dbe355d69fac0ad 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 58.56 T 14-09-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 PAJ_RS13635 40f90018280e35b0a5b2f34fe3186efa 242 Pfam PF12840 Helix-turn-helix domain 29 87 1.9E-9 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13635 40f90018280e35b0a5b2f34fe3186efa 242 SUPERFAMILY SSF46785 19 107 1.63E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13635 40f90018280e35b0a5b2f34fe3186efa 242 Gene3D G3DSA:1.10.10.10 23 107 2.3E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS13635 40f90018280e35b0a5b2f34fe3186efa 242 PANTHER PTHR39168 23 242 6.1E-47 T 14-09-2016 PAJ_RS13635 40f90018280e35b0a5b2f34fe3186efa 242 PANTHER PTHR39168:SF1 23 242 6.1E-47 T 14-09-2016 PAJ_RS13635 40f90018280e35b0a5b2f34fe3186efa 242 SMART SM00418 28 107 2.9E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PAJ_RS19180 a8ed30dd2c8f064587da993f2936494e 219 SMART SM00448 1 112 2.8E-34 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS19180 a8ed30dd2c8f064587da993f2936494e 219 Pfam PF00072 Response regulator receiver domain 3 112 3.4E-24 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS19180 a8ed30dd2c8f064587da993f2936494e 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 215 6.0E-19 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS19180 a8ed30dd2c8f064587da993f2936494e 219 SUPERFAMILY SSF52172 1 126 3.7E-35 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS19180 a8ed30dd2c8f064587da993f2936494e 219 Gene3D G3DSA:1.10.10.10 123 216 1.3E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS19180 a8ed30dd2c8f064587da993f2936494e 219 Gene3D G3DSA:3.40.50.2300 1 121 1.6E-34 T 14-09-2016 PAJ_RS19180 a8ed30dd2c8f064587da993f2936494e 219 SUPERFAMILY SSF46894 118 216 1.16E-24 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS19180 a8ed30dd2c8f064587da993f2936494e 219 PANTHER PTHR26402 1 216 1.2E-85 T 14-09-2016 PAJ_RS19180 a8ed30dd2c8f064587da993f2936494e 219 SMART SM00862 145 216 7.3E-20 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS19180 a8ed30dd2c8f064587da993f2936494e 219 PANTHER PTHR26402:SF279 1 216 1.2E-85 T 14-09-2016 PAJ_RS10865 54919f9af9d484e76f6dc9fad88377b0 406 SUPERFAMILY SSF53901 1 253 8.79E-63 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS10865 54919f9af9d484e76f6dc9fad88377b0 406 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 14-09-2016 IPR018201 Beta-ketoacyl synthase, active site PAJ_RS10865 54919f9af9d484e76f6dc9fad88377b0 406 SUPERFAMILY SSF53901 215 404 2.11E-59 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS10865 54919f9af9d484e76f6dc9fad88377b0 406 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 361 3.9E-29 T 14-09-2016 IPR014031 Beta-ketoacyl synthase, C-terminal PAJ_RS10865 54919f9af9d484e76f6dc9fad88377b0 406 Gene3D G3DSA:3.40.47.10 6 259 1.4E-54 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS10865 54919f9af9d484e76f6dc9fad88377b0 406 PANTHER PTHR11712 1 404 1.1E-165 T 14-09-2016 PAJ_RS10865 54919f9af9d484e76f6dc9fad88377b0 406 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 246 1.8E-39 T 14-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal PAJ_RS10865 54919f9af9d484e76f6dc9fad88377b0 406 Gene3D G3DSA:3.40.47.10 263 405 1.5E-47 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS10865 54919f9af9d484e76f6dc9fad88377b0 406 SMART SM00825 Beta-ketoacyl synthase 4 406 2.2E-12 T 14-09-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PAJ_RS05235 ba87900a53340dcac9c8296699e2b1a2 259 PANTHER PTHR33121 11 257 6.5E-43 T 14-09-2016 PAJ_RS05235 ba87900a53340dcac9c8296699e2b1a2 259 PANTHER PTHR33121:SF6 11 257 6.5E-43 T 14-09-2016 PAJ_RS05235 ba87900a53340dcac9c8296699e2b1a2 259 Pfam PF00563 EAL domain 14 219 5.7E-11 T 14-09-2016 IPR001633 EAL domain PAJ_RS05235 ba87900a53340dcac9c8296699e2b1a2 259 SUPERFAMILY SSF141868 15 222 4.45E-18 T 14-09-2016 IPR001633 EAL domain PAJ_RS05235 ba87900a53340dcac9c8296699e2b1a2 259 SMART SM00052 2 226 2.9E-4 T 14-09-2016 IPR001633 EAL domain PAJ_RS05235 ba87900a53340dcac9c8296699e2b1a2 259 Gene3D G3DSA:3.20.20.450 111 229 1.3E-14 T 14-09-2016 IPR001633 EAL domain PAJ_RS05425 1d9424205e3686878e383b6699c07a0f 339 Gene3D G3DSA:3.10.580.10 19 151 1.8E-13 T 14-09-2016 PAJ_RS05425 1d9424205e3686878e383b6699c07a0f 339 Gene3D G3DSA:1.10.357.20 165 337 1.7E-52 T 14-09-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 PAJ_RS05425 1d9424205e3686878e383b6699c07a0f 339 SUPERFAMILY SSF161093 166 337 5.62E-45 T 14-09-2016 PAJ_RS05425 1d9424205e3686878e383b6699c07a0f 339 SUPERFAMILY SSF54631 22 161 1.57E-19 T 14-09-2016 PAJ_RS05425 1d9424205e3686878e383b6699c07a0f 339 Pfam PF01769 Divalent cation transporter 209 330 2.1E-25 T 14-09-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 PAJ_RS05425 1d9424205e3686878e383b6699c07a0f 339 PANTHER PTHR41394 162 339 2.1E-32 T 14-09-2016 PAJ_RS05425 1d9424205e3686878e383b6699c07a0f 339 Pfam PF00571 CBS domain 91 142 6.3E-6 T 14-09-2016 IPR000644 CBS domain PAJ_RS05425 1d9424205e3686878e383b6699c07a0f 339 PANTHER PTHR41394:SF2 162 339 2.1E-32 T 14-09-2016 PAJ_RS20680 9bcad50b5dcc71ede7a3a6e6c1fc0940 328 SUPERFAMILY SSF53590 1 322 1.05E-65 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain PAJ_RS20680 9bcad50b5dcc71ede7a3a6e6c1fc0940 328 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 2 313 3.2E-51 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain PAJ_RS20680 9bcad50b5dcc71ede7a3a6e6c1fc0940 328 PANTHER PTHR12304 2 322 1.1E-56 T 14-09-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase PAJ_RS20680 9bcad50b5dcc71ede7a3a6e6c1fc0940 328 Gene3D G3DSA:3.90.245.10 1 324 1.7E-75 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain PAJ_RS01880 b738029da2eab97b386b34c012f90cbd 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 22.653 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PAJ_RS01880 b738029da2eab97b386b34c012f90cbd 109 SUPERFAMILY SSF82607 11 103 1.09E-34 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PAJ_RS01880 b738029da2eab97b386b34c012f90cbd 109 Pfam PF02575 YbaB/EbfC DNA-binding family 11 99 1.7E-33 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PAJ_RS01880 b738029da2eab97b386b34c012f90cbd 109 PANTHER PTHR33449 1 109 4.5E-52 T 14-09-2016 PAJ_RS01880 b738029da2eab97b386b34c012f90cbd 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 105 3.3E-40 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PAJ_RS01880 b738029da2eab97b386b34c012f90cbd 109 PANTHER PTHR33449:SF1 1 109 4.5E-52 T 14-09-2016 PAJ_RS01880 b738029da2eab97b386b34c012f90cbd 109 PIRSF PIRSF004555 3 109 4.9E-37 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PAJ_RS01880 b738029da2eab97b386b34c012f90cbd 109 Gene3D G3DSA:3.30.1310.10 1 109 9.8E-49 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 PIRSF PIRSF001423 1 560 9.7E-291 T 14-09-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 TIGRFAM TIGR01228 hutU: urocanate hydratase 11 559 1.5E-286 T 14-09-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 PANTHER PTHR12216 10 559 0.0 T 14-09-2016 PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 Pfam PF01175 Urocanase 13 552 2.1E-257 T 14-09-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 Hamap MF_00577 Urocanate hydratase [hutU]. 1 559 49.385 T 14-09-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 ProSitePatterns PS01233 Urocanase signature. 447 462 - T 14-09-2016 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 PANTHER PTHR12216:SF3 10 559 0.0 T 14-09-2016 PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 Gene3D G3DSA:3.40.1770.10 365 559 4.7E-160 T 14-09-2016 PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 Gene3D G3DSA:3.40.1770.10 10 142 4.7E-160 T 14-09-2016 PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 SUPERFAMILY SSF111326 10 559 1.31E-256 T 14-09-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PAJ_RS03190 4cb0ac4e4b927686e0b3df96d1eb4443 560 Gene3D G3DSA:3.40.50.10730 144 354 6.5E-92 T 14-09-2016 PAJ_RS17325 1a8b01ea83e7fa97dff684e13701453d 238 SUPERFAMILY SSF54211 1 181 1.52E-44 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS17325 1a8b01ea83e7fa97dff684e13701453d 238 PANTHER PTHR11953 1 238 4.8E-88 T 14-09-2016 PAJ_RS17325 1a8b01ea83e7fa97dff684e13701453d 238 Pfam PF03725 3' exoribonuclease family, domain 2 157 222 7.6E-11 T 14-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PAJ_RS17325 1a8b01ea83e7fa97dff684e13701453d 238 Hamap MF_00564 Ribonuclease PH [rph]. 1 237 49.361 T 14-09-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 PAJ_RS17325 1a8b01ea83e7fa97dff684e13701453d 238 SUPERFAMILY SSF55666 153 237 3.93E-26 T 14-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PAJ_RS17325 1a8b01ea83e7fa97dff684e13701453d 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 1.7E-23 T 14-09-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 PAJ_RS17325 1a8b01ea83e7fa97dff684e13701453d 238 PANTHER PTHR11953:SF0 1 238 4.8E-88 T 14-09-2016 PAJ_RS17325 1a8b01ea83e7fa97dff684e13701453d 238 Gene3D G3DSA:3.30.230.70 5 237 3.8E-35 T 14-09-2016 IPR027408 PNPase/RNase PH domain PAJ_RS17325 1a8b01ea83e7fa97dff684e13701453d 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 2.6E-113 T 14-09-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 PAJ_RS17325 1a8b01ea83e7fa97dff684e13701453d 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 14-09-2016 IPR018336 Ribonuclease PH, conserved site PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 Pfam PF01820 D-ala D-ala ligase N-terminus 3 85 2.1E-19 T 14-09-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 Gene3D G3DSA:3.30.470.20 179 304 1.1E-51 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 Gene3D G3DSA:3.30.470.20 84 102 1.1E-51 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 247 275 - T 14-09-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 2 305 35.363 T 14-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 SUPERFAMILY SSF52440 2 95 1.34E-27 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 Gene3D G3DSA:3.40.50.20 2 83 4.8E-26 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 PIRSF PIRSF039102 36 305 1.7E-91 T 14-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 PANTHER PTHR23132:SF0 1 304 4.4E-91 T 14-09-2016 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 62 73 - T 14-09-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 SUPERFAMILY SSF56059 96 301 1.25E-54 T 14-09-2016 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 Gene3D G3DSA:3.30.1490.20 119 178 1.3E-23 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 Pfam PF07478 D-ala D-ala ligase C-terminus 102 302 1.5E-65 T 14-09-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 PANTHER PTHR23132 1 304 4.4E-91 T 14-09-2016 PAJ_RS00335 be6e3825bbdef8203402042cdbe0e48e 305 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 3 304 4.4E-103 T 14-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS19675 295959211dd543bb772e480e849dec2f 133 PANTHER PTHR39579 1 133 5.2E-48 T 14-09-2016 PAJ_RS19675 295959211dd543bb772e480e849dec2f 133 PIRSF PIRSF006318 1 133 1.5E-48 T 14-09-2016 IPR009386 Protein of unknown function DUF1043 PAJ_RS19675 295959211dd543bb772e480e849dec2f 133 Pfam PF06295 Protein of unknown function (DUF1043) 7 126 6.4E-46 T 14-09-2016 IPR009386 Protein of unknown function DUF1043 PAJ_RS07565 67f8e142a19688093d801e14bd82b7f2 96 Pfam PF04328 Protein of unknown function (DUF466) 32 96 7.1E-24 T 14-09-2016 IPR007423 Protein of unknown function DUF466 PAJ_RS07565 67f8e142a19688093d801e14bd82b7f2 96 PANTHER PTHR38453 34 95 1.1E-28 T 14-09-2016 PAJ_RS07565 67f8e142a19688093d801e14bd82b7f2 96 PANTHER PTHR38453:SF1 34 95 1.1E-28 T 14-09-2016 PAJ_RS07950 2c69d69be940ffacfe206358b9d083e9 249 SUPERFAMILY SSF56935 61 231 4.58E-5 T 14-09-2016 PAJ_RS07950 2c69d69be940ffacfe206358b9d083e9 249 Pfam PF06629 MltA-interacting protein MipA 29 249 5.6E-56 T 14-09-2016 IPR010583 MltA-interacting MipA PAJ_RS07950 2c69d69be940ffacfe206358b9d083e9 249 Gene3D G3DSA:2.40.160.20 141 249 1.3E-5 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS07950 2c69d69be940ffacfe206358b9d083e9 249 PANTHER PTHR38776 4 249 1.6E-71 T 14-09-2016 PAJ_RS03165 7f7211ec88c9d1c933438674b79aef74 322 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 67 4.4E-9 T 14-09-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain PAJ_RS03165 7f7211ec88c9d1c933438674b79aef74 322 Gene3D G3DSA:3.40.1030.10 80 318 1.7E-36 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PAJ_RS03165 7f7211ec88c9d1c933438674b79aef74 322 Gene3D G3DSA:1.20.970.10 7 69 6.3E-17 T 14-09-2016 PAJ_RS03165 7f7211ec88c9d1c933438674b79aef74 322 SUPERFAMILY SSF52418 75 318 2.75E-44 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PAJ_RS03165 7f7211ec88c9d1c933438674b79aef74 322 SUPERFAMILY SSF47648 7 72 2.75E-14 T 14-09-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain PAJ_RS11075 27d969efdffeef14dacefbdbc441b1b8 184 PANTHER PTHR33420 14 184 2.5E-24 T 14-09-2016 PAJ_RS11075 27d969efdffeef14dacefbdbc441b1b8 184 SUPERFAMILY SSF49401 40 184 1.34E-32 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS11075 27d969efdffeef14dacefbdbc441b1b8 184 Gene3D G3DSA:2.60.40.1090 39 184 2.1E-34 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS11075 27d969efdffeef14dacefbdbc441b1b8 184 Pfam PF00419 Fimbrial protein 41 183 1.2E-14 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 PANTHER PTHR18966:SF194 20 243 5.4E-136 T 14-09-2016 PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 SMART SM00062 22 241 2.7E-91 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 2.9E-74 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 PANTHER PTHR18966 20 243 5.4E-136 T 14-09-2016 PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 Gene3D G3DSA:3.40.190.10 109 201 5.1E-31 T 14-09-2016 PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 Gene3D G3DSA:3.40.190.10 20 108 2.8E-48 T 14-09-2016 PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 Gene3D G3DSA:3.40.190.10 203 242 2.8E-48 T 14-09-2016 PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 SUPERFAMILY SSF53850 1 242 3.82E-77 T 14-09-2016 PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 SMART SM00079 22 243 6.4E-6 T 14-09-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 2 241 6.0E-94 T 14-09-2016 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 PAJ_RS03485 6b2cf4ab8d940d1d3dcf19494cb59bb4 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PAJ_RS15685 621b11e9e4cb3d07a80c52d4821d25d5 374 Gene3D G3DSA:3.40.50.450 109 253 2.3E-9 T 14-09-2016 PAJ_RS15685 621b11e9e4cb3d07a80c52d4821d25d5 374 Pfam PF02481 DNA recombination-mediator protein A 73 274 2.5E-74 T 14-09-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 PAJ_RS15685 621b11e9e4cb3d07a80c52d4821d25d5 374 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 68 283 2.4E-78 T 14-09-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 PAJ_RS15685 621b11e9e4cb3d07a80c52d4821d25d5 374 PANTHER PTHR32039 72 369 2.1E-114 T 14-09-2016 PAJ_RS15685 621b11e9e4cb3d07a80c52d4821d25d5 374 SUPERFAMILY SSF102405 76 283 5.72E-39 T 14-09-2016 PAJ_RS15685 621b11e9e4cb3d07a80c52d4821d25d5 374 PANTHER PTHR32039:SF8 72 369 2.1E-114 T 14-09-2016 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 Gene3D G3DSA:3.40.50.300 3 164 5.8E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 Gene3D G3DSA:3.40.50.300 205 386 3.2E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 Gene3D G3DSA:3.30.300.20 387 462 3.0E-23 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 Pfam PF01926 50S ribosome-binding GTPase 5 119 2.3E-28 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 Pfam PF01926 50S ribosome-binding GTPase 208 325 3.4E-24 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 SUPERFAMILY SSF52540 138 167 2.48E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 SUPERFAMILY SSF52540 203 467 2.48E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 Hamap MF_00195 GTPase Der [der]. 2 464 39.194 T 14-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 381 461 4.1E-26 T 14-09-2016 IPR032859 GTPase Der, C-terminal KH-domain-like PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 PANTHER PTHR11649 1 462 1.2E-164 T 14-09-2016 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 PANTHER PTHR11649:SF5 1 462 1.2E-164 T 14-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 154 6.2E-20 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 205 370 1.6E-22 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 461 4.7E-179 T 14-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 9.3E-10 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 9.3E-10 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 SUPERFAMILY SSF52540 4 174 4.88E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11845 a30649f1a2a773d063b1bc846be1f467 494 PIRSF PIRSF006485 1 469 6.9E-179 T 14-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 PAJ_RS12565 3cc352c73553402321bc99d6aaa717ee 372 Gene3D G3DSA:3.40.1280.10 219 371 2.0E-40 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PAJ_RS12565 3cc352c73553402321bc99d6aaa717ee 372 PANTHER PTHR12029 1 371 8.7E-161 T 14-09-2016 PAJ_RS12565 3cc352c73553402321bc99d6aaa717ee 372 PANTHER PTHR12029:SF57 1 371 8.7E-161 T 14-09-2016 PAJ_RS12565 3cc352c73553402321bc99d6aaa717ee 372 PIRSF PIRSF006280 1 372 1.5E-152 T 14-09-2016 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted GO:0008168 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PAJ_RS12565 3cc352c73553402321bc99d6aaa717ee 372 SUPERFAMILY SSF75217 218 371 4.32E-38 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases PAJ_RS12565 3cc352c73553402321bc99d6aaa717ee 372 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 138 208 1.8E-11 T 14-09-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 PAJ_RS12565 3cc352c73553402321bc99d6aaa717ee 372 Pfam PF00588 SpoU rRNA Methylase family 227 364 1.7E-31 T 14-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 PAJ_RS12565 3cc352c73553402321bc99d6aaa717ee 372 Gene3D G3DSA:3.30.1330.30 134 206 4.5E-7 T 14-09-2016 IPR029064 50S ribosomal protein L30e-like PAJ_RS12565 3cc352c73553402321bc99d6aaa717ee 372 SMART SM00967 137 212 3.5E-7 T 14-09-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 PAJ_RS12565 3cc352c73553402321bc99d6aaa717ee 372 SUPERFAMILY SSF55315 135 207 1.29E-8 T 14-09-2016 IPR029064 50S ribosomal protein L30e-like PAJ_RS15905 4f2bd594a04714fc1bbc656ba97900f8 119 Pfam PF02635 DsrE/DsrF-like family 3 119 2.7E-24 T 14-09-2016 IPR003787 Sulphur relay, DsrE/F-like protein PAJ_RS15905 4f2bd594a04714fc1bbc656ba97900f8 119 SUPERFAMILY SSF75169 1 119 9.81E-34 T 14-09-2016 IPR027396 DsrEFH-like PAJ_RS15905 4f2bd594a04714fc1bbc656ba97900f8 119 PANTHER PTHR38780:SF1 1 119 5.2E-50 T 14-09-2016 PAJ_RS15905 4f2bd594a04714fc1bbc656ba97900f8 119 Gene3D G3DSA:3.40.1260.10 1 119 1.6E-44 T 14-09-2016 IPR027396 DsrEFH-like PAJ_RS15905 4f2bd594a04714fc1bbc656ba97900f8 119 PANTHER PTHR38780 1 119 5.2E-50 T 14-09-2016 PAJ_RS15905 4f2bd594a04714fc1bbc656ba97900f8 119 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 4 119 3.1E-42 T 14-09-2016 IPR017462 Sulphur relay, TusC/DsrF PAJ_RS03425 6812e912b66841eb581e13b993d81a0d 240 PANTHER PTHR23026 1 185 8.6E-74 T 14-09-2016 PAJ_RS03425 6812e912b66841eb581e13b993d81a0d 240 PIRSF PIRSF005426 1 240 1.8E-82 T 14-09-2016 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 PAJ_RS03425 6812e912b66841eb581e13b993d81a0d 240 Pfam PF00881 Nitroreductase family 11 159 8.3E-20 T 14-09-2016 IPR029479 Nitroreductase PAJ_RS03425 6812e912b66841eb581e13b993d81a0d 240 PANTHER PTHR23026:SF98 1 185 8.6E-74 T 14-09-2016 PAJ_RS03425 6812e912b66841eb581e13b993d81a0d 240 Gene3D G3DSA:3.40.109.10 2 239 3.3E-72 T 14-09-2016 IPR000415 Nitroreductase-like GO:0016491 PAJ_RS03425 6812e912b66841eb581e13b993d81a0d 240 SUPERFAMILY SSF55469 1 239 7.98E-72 T 14-09-2016 IPR000415 Nitroreductase-like GO:0016491 PAJ_RS06135 038430f79114888e485d59d82b2a581f 79 ProDom PD865043 PLASMID SPA-ORF10 3'REGION CYTOPLASMIC ORF-10 SPAS STY1854 25 79 0.005 T 14-09-2016 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 PAJ_RS06135 038430f79114888e485d59d82b2a581f 79 Pfam PF10798 Biofilm development protein YmgB/AriR 26 73 4.3E-7 T 14-09-2016 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 Gene3D G3DSA:3.40.190.10 121 226 2.6E-7 T 14-09-2016 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 Gene3D G3DSA:1.10.530.10 287 461 1.8E-36 T 14-09-2016 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 SMART SM00062 44 268 3.0E-36 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 Gene3D G3DSA:3.40.190.10 41 120 8.7E-17 T 14-09-2016 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 Gene3D G3DSA:3.40.190.10 227 266 8.7E-17 T 14-09-2016 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 SUPERFAMILY SSF53850 45 267 1.6E-40 T 14-09-2016 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 PANTHER PTHR21666 273 482 5.2E-132 T 14-09-2016 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 PANTHER PTHR21666:SF215 273 482 5.2E-132 T 14-09-2016 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 5 475 48.761 T 14-09-2016 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 Pfam PF01464 Transglycosylase SLT domain 296 400 7.5E-23 T 14-09-2016 IPR008258 Transglycosylase SLT domain 1 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 SUPERFAMILY SSF53955 432 445 1.03E-34 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 SUPERFAMILY SSF53955 245 397 1.03E-34 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 309 337 - T 14-09-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 PAJ_RS11995 f03741fb7dd057e9022e1962cc8a9b55 485 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 48 267 6.8E-35 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 SUPERFAMILY SSF53686 74 437 5.76E-52 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 PANTHER PTHR10314:SF9 155 441 2.2E-209 T 14-09-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 PANTHER PTHR10314:SF9 39 131 2.2E-209 T 14-09-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 Gene3D G3DSA:3.40.50.1100 180 438 5.3E-42 T 14-09-2016 PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 74 399 1.0E-54 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 PANTHER PTHR10314 10 21 2.2E-209 T 14-09-2016 PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 PANTHER PTHR10314 39 131 2.2E-209 T 14-09-2016 PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 108 122 - T 14-09-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 PANTHER PTHR10314 155 441 2.2E-209 T 14-09-2016 PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 11 438 1.1E-229 T 14-09-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 PANTHER PTHR10314:SF9 10 21 2.2E-209 T 14-09-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 PAJ_RS13130 3d2b4f90fa52a699a65b2df15dc16291 442 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 442 266.438 T 14-09-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 PAJ_RS20455 d97c7bb78a8cf04b9ac44ecc11e5d0f0 772 SUPERFAMILY SSF82866 224 403 2.49E-20 T 14-09-2016 PAJ_RS20455 d97c7bb78a8cf04b9ac44ecc11e5d0f0 772 SUPERFAMILY SSF82866 637 764 1.57E-14 T 14-09-2016 PAJ_RS20455 d97c7bb78a8cf04b9ac44ecc11e5d0f0 772 Pfam PF03176 MMPL family 251 402 4.3E-10 T 14-09-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 PAJ_RS20455 d97c7bb78a8cf04b9ac44ecc11e5d0f0 772 Gene3D G3DSA:1.20.1640.10 637 705 6.1E-6 T 14-09-2016 PAJ_RS20455 d97c7bb78a8cf04b9ac44ecc11e5d0f0 772 Gene3D G3DSA:1.20.1640.10 223 403 1.3E-19 T 14-09-2016 PAJ_RS08950 59262db2ca5b9a93a46765aec722bf8b 64 Hamap MF_01549 Protein DsrB [dsrB]. 1 62 26.932 T 14-09-2016 IPR019717 Dextransucrase DSRB PAJ_RS08950 59262db2ca5b9a93a46765aec722bf8b 64 Pfam PF10781 Dextransucrase DSRB 1 60 1.3E-36 T 14-09-2016 IPR019717 Dextransucrase DSRB PAJ_RS11430 1909f202a58bc3759374b35212e2111a 228 Gene3D G3DSA:1.10.10.10 179 211 7.7E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11430 1909f202a58bc3759374b35212e2111a 228 PANTHER PTHR26402:SF550 6 155 1.5E-50 T 14-09-2016 PAJ_RS11430 1909f202a58bc3759374b35212e2111a 228 SMART SM00448 6 119 9.4E-19 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS11430 1909f202a58bc3759374b35212e2111a 228 Pfam PF09339 IclR helix-turn-helix domain 171 210 8.4E-5 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS11430 1909f202a58bc3759374b35212e2111a 228 PIRSF PIRSF006171 4 228 1.3E-62 T 14-09-2016 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 PAJ_RS11430 1909f202a58bc3759374b35212e2111a 228 Pfam PF00072 Response regulator receiver domain 8 117 1.4E-17 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS11430 1909f202a58bc3759374b35212e2111a 228 SUPERFAMILY SSF52172 4 143 5.12E-27 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS11430 1909f202a58bc3759374b35212e2111a 228 PANTHER PTHR26402 6 155 1.5E-50 T 14-09-2016 PAJ_RS11430 1909f202a58bc3759374b35212e2111a 228 Gene3D G3DSA:3.40.50.2300 2 130 5.8E-24 T 14-09-2016 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 2.5E-137 T 14-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 SUPERFAMILY SSF55931 102 468 2.16E-137 T 14-09-2016 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 14-09-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 PANTHER PTHR20852:SF15 160 469 3.0E-274 T 14-09-2016 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 PANTHER PTHR20852 1 138 3.0E-274 T 14-09-2016 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 PANTHER PTHR20852 160 469 3.0E-274 T 14-09-2016 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 SMART SM01230 102 379 2.9E-149 T 14-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 14-09-2016 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 1.4E-214 T 14-09-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 Gene3D G3DSA:3.30.590.10 106 455 3.9E-139 T 14-09-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 Gene3D G3DSA:3.10.20.70 3 105 3.5E-40 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 6.4E-32 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 SUPERFAMILY SSF54368 3 100 1.57E-36 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 14-09-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PAJ_RS17450 b520a702ff0ed859d785c9f0b8da363e 469 PANTHER PTHR20852:SF15 1 138 3.0E-274 T 14-09-2016 PAJ_RS07840 63efdaadb731fc33ade881a6a6c2ded8 302 PANTHER PTHR22572 10 296 6.8E-148 T 14-09-2016 PAJ_RS07840 63efdaadb731fc33ade881a6a6c2ded8 302 Gene3D G3DSA:3.90.550.10 9 281 1.4E-68 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS07840 63efdaadb731fc33ade881a6a6c2ded8 302 PANTHER PTHR22572:SF118 10 296 6.8E-148 T 14-09-2016 PAJ_RS07840 63efdaadb731fc33ade881a6a6c2ded8 302 SUPERFAMILY SSF53448 9 293 3.6E-63 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS07840 63efdaadb731fc33ade881a6a6c2ded8 302 Pfam PF00483 Nucleotidyl transferase 10 276 3.3E-25 T 14-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 PAJ_RS07840 63efdaadb731fc33ade881a6a6c2ded8 302 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 8 275 1.8E-112 T 14-09-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 PAJ_RS05265 7b65f91d6112ca8f17e8c32503eda580 233 Pfam PF04970 Lecithin retinol acyltransferase 3 106 3.0E-21 T 14-09-2016 IPR007053 LRAT-like domain PAJ_RS05265 7b65f91d6112ca8f17e8c32503eda580 233 PANTHER PTHR13943 12 122 3.7E-18 T 14-09-2016 PAJ_RS05290 9ced2e1b5d27293736bcf16d17158fbb 183 SUPERFAMILY SSF48452 71 164 5.55E-16 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS05290 9ced2e1b5d27293736bcf16d17158fbb 183 SMART SM00028 133 166 470.0 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS05290 9ced2e1b5d27293736bcf16d17158fbb 183 SMART SM00028 99 132 1.4E-4 T 14-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PAJ_RS05290 9ced2e1b5d27293736bcf16d17158fbb 183 Gene3D G3DSA:1.25.40.10 72 161 2.2E-16 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS05290 9ced2e1b5d27293736bcf16d17158fbb 183 Pfam PF07719 Tetratricopeptide repeat 99 131 6.9E-6 T 14-09-2016 IPR013105 Tetratricopeptide repeat 2 PAJ_RS14605 1da770b1c70f8d814daf5ba4722a2a4c 272 Pfam PF02673 Bacitracin resistance protein BacA 10 264 1.5E-80 T 14-09-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 PAJ_RS14605 1da770b1c70f8d814daf5ba4722a2a4c 272 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 264 2.6E-100 T 14-09-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 PAJ_RS14605 1da770b1c70f8d814daf5ba4722a2a4c 272 PANTHER PTHR30622 3 272 1.4E-140 T 14-09-2016 PAJ_RS14605 1da770b1c70f8d814daf5ba4722a2a4c 272 PANTHER PTHR30622:SF3 3 272 1.4E-140 T 14-09-2016 PAJ_RS14605 1da770b1c70f8d814daf5ba4722a2a4c 272 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 271 18.445 T 14-09-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 SUPERFAMILY SSF56954 3 27 1.7E-93 T 14-09-2016 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 SUPERFAMILY SSF56954 56 464 1.7E-93 T 14-09-2016 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 Pfam PF02321 Outer membrane efflux protein 65 253 5.2E-23 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 Pfam PF02321 Outer membrane efflux protein 283 462 7.4E-26 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 PANTHER PTHR30203:SF15 1 471 2.9E-140 T 14-09-2016 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 Gene3D G3DSA:1.20.1600.10 55 91 2.7E-81 T 14-09-2016 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 Gene3D G3DSA:1.20.1600.10 141 313 2.7E-81 T 14-09-2016 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 Gene3D G3DSA:1.20.1600.10 351 464 2.7E-81 T 14-09-2016 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 464 3.6E-106 T 14-09-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 PANTHER PTHR30203 1 471 2.9E-140 T 14-09-2016 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 Gene3D G3DSA:2.20.200.10 314 349 1.9E-17 T 14-09-2016 PAJ_RS04790 fc4b10fa6d5b16cf800250cb71616197 477 Gene3D G3DSA:2.20.200.10 101 140 1.9E-17 T 14-09-2016 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 PANTHER PTHR35799 2 169 2.1E-100 T 14-09-2016 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 SUPERFAMILY SSF63411 4 162 8.42E-67 T 14-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 35.436 T 14-09-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 PIRSF PIRSF006160 1 162 1.2E-65 T 14-09-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 153 1.2E-61 T 14-09-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 Gene3D G3DSA:3.30.1360.80 1 170 2.2E-74 T 14-09-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 154 6.0E-72 T 14-09-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 1.6E-48 T 14-09-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 1.6E-48 T 14-09-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 1.6E-48 T 14-09-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 1.6E-48 T 14-09-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 PAJ_RS12715 19e2927f4fd828e165cef64f42ce2bf4 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 1.6E-48 T 14-09-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 PAJ_RS07995 4af6b5cc32ca661511bfa3f5a28e2b3b 511 Pfam PF04293 SpoVR like protein 20 451 1.1E-177 T 14-09-2016 IPR007390 Sporulation stage V, protein R PAJ_RS07995 4af6b5cc32ca661511bfa3f5a28e2b3b 511 PANTHER PTHR30029:SF2 10 509 1.6E-244 T 14-09-2016 PAJ_RS07995 4af6b5cc32ca661511bfa3f5a28e2b3b 511 PANTHER PTHR30029 10 509 1.6E-244 T 14-09-2016 PAJ_RS19405 38d09538fd2b25da5b53a8717e90dfd4 357 PANTHER PTHR23028 2 347 1.6E-41 T 14-09-2016 PAJ_RS19405 38d09538fd2b25da5b53a8717e90dfd4 357 Pfam PF01757 Acyltransferase family 4 327 3.2E-30 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 PAJ_RS05845 c960442bf2325f87044bf6e7cb512f6c 366 Pfam PF01594 Domain of unknown function DUF20 15 343 1.9E-51 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like PAJ_RS05845 c960442bf2325f87044bf6e7cb512f6c 366 PANTHER PTHR21716 5 360 2.8E-151 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like PAJ_RS05845 c960442bf2325f87044bf6e7cb512f6c 366 PANTHER PTHR21716:SF20 5 360 2.8E-151 T 14-09-2016 PAJ_RS19035 048ee603613d291b0501771367201997 93 ProDom PD064934 YJCB MEMBRANE INNER ECS5042 21 92 8.0E-8 T 14-09-2016 IPR016958 Uncharacterised conserved protein UCP030798 PAJ_RS19035 048ee603613d291b0501771367201997 93 Pfam PF15940 Family of unknown function 1 92 1.2E-40 T 14-09-2016 IPR016958 Uncharacterised conserved protein UCP030798 PAJ_RS16030 269842995b4adf2baac65e0fb2c81384 190 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 65 82 - T 14-09-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 PAJ_RS16030 269842995b4adf2baac65e0fb2c81384 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 59 3.2E-10 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PAJ_RS16030 269842995b4adf2baac65e0fb2c81384 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 82 3.2E-10 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PAJ_RS16030 269842995b4adf2baac65e0fb2c81384 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 159 3.2E-10 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PAJ_RS16030 269842995b4adf2baac65e0fb2c81384 190 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 31 188 1.1E-48 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PAJ_RS16030 269842995b4adf2baac65e0fb2c81384 190 Gene3D G3DSA:2.40.100.10 27 189 1.8E-53 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS16030 269842995b4adf2baac65e0fb2c81384 190 PANTHER PTHR11071 32 189 1.5E-66 T 14-09-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 PAJ_RS16030 269842995b4adf2baac65e0fb2c81384 190 SUPERFAMILY SSF50891 26 189 4.38E-57 T 14-09-2016 IPR029000 Cyclophilin-like domain PAJ_RS16030 269842995b4adf2baac65e0fb2c81384 190 PANTHER PTHR11071:SF265 32 189 1.5E-66 T 14-09-2016 PAJ_RS06475 0a1db80042c5ae8b3ade70fb44bb6485 429 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 100 237 6.2E-7 T 14-09-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 PAJ_RS06475 0a1db80042c5ae8b3ade70fb44bb6485 429 Gene3D G3DSA:3.40.50.1820 101 341 9.0E-31 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS06475 0a1db80042c5ae8b3ade70fb44bb6485 429 SUPERFAMILY SSF53474 89 335 2.07E-29 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS07660 3ebb9020d7a0a2fe0efbf9a200ba9949 196 Gene3D G3DSA:3.40.50.300 3 196 9.0E-76 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07660 3ebb9020d7a0a2fe0efbf9a200ba9949 196 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 3 21 2.9E-7 T 14-09-2016 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 PAJ_RS07660 3ebb9020d7a0a2fe0efbf9a200ba9949 196 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 26 196 4.2E-76 T 14-09-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 PAJ_RS07660 3ebb9020d7a0a2fe0efbf9a200ba9949 196 PANTHER PTHR30069 5 196 4.3E-68 T 14-09-2016 PAJ_RS07660 3ebb9020d7a0a2fe0efbf9a200ba9949 196 PIRSF PIRSF015617 1 196 2.0E-67 T 14-09-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 PAJ_RS07660 3ebb9020d7a0a2fe0efbf9a200ba9949 196 SUPERFAMILY SSF52540 7 196 1.6E-74 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS07660 3ebb9020d7a0a2fe0efbf9a200ba9949 196 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 28 196 1.6E-60 T 14-09-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 PAJ_RS08935 882604a382dcd687d51edbef0d001ade 261 Pfam PF01311 Bacterial export proteins, family 1 14 246 6.2E-69 T 14-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PAJ_RS08935 882604a382dcd687d51edbef0d001ade 261 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 255 3.5E-78 T 14-09-2016 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 PAJ_RS08935 882604a382dcd687d51edbef0d001ade 261 PANTHER PTHR30065 2 261 8.3E-97 T 14-09-2016 PAJ_RS08935 882604a382dcd687d51edbef0d001ade 261 PANTHER PTHR30065:SF1 2 261 8.3E-97 T 14-09-2016 PAJ_RS08935 882604a382dcd687d51edbef0d001ade 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 2.6E-31 T 14-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PAJ_RS08935 882604a382dcd687d51edbef0d001ade 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 2.6E-31 T 14-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PAJ_RS08935 882604a382dcd687d51edbef0d001ade 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 2.6E-31 T 14-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PAJ_RS08935 882604a382dcd687d51edbef0d001ade 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 2.6E-31 T 14-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PAJ_RS04575 7bd6ef7d8737e6b6934a56481535cd12 329 Gene3D G3DSA:3.40.50.300 5 166 3.3E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04575 7bd6ef7d8737e6b6934a56481535cd12 329 Gene3D G3DSA:1.20.272.10 209 325 1.1E-37 T 14-09-2016 PAJ_RS04575 7bd6ef7d8737e6b6934a56481535cd12 329 Gene3D G3DSA:1.10.8.10 169 206 1.3E-8 T 14-09-2016 PAJ_RS04575 7bd6ef7d8737e6b6934a56481535cd12 329 SUPERFAMILY SSF52540 1 206 3.1E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04575 7bd6ef7d8737e6b6934a56481535cd12 329 Pfam PF13177 DNA polymerase III, delta subunit 9 166 1.1E-37 T 14-09-2016 PAJ_RS04575 7bd6ef7d8737e6b6934a56481535cd12 329 PANTHER PTHR11669:SF8 12 323 1.9E-94 T 14-09-2016 PAJ_RS04575 7bd6ef7d8737e6b6934a56481535cd12 329 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 13 201 1.1E-55 T 14-09-2016 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS04575 7bd6ef7d8737e6b6934a56481535cd12 329 SUPERFAMILY SSF48019 208 324 6.8E-30 T 14-09-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 PAJ_RS04575 7bd6ef7d8737e6b6934a56481535cd12 329 PANTHER PTHR11669 12 323 1.9E-94 T 14-09-2016 PAJ_RS04575 7bd6ef7d8737e6b6934a56481535cd12 329 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 209 319 3.3E-35 T 14-09-2016 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS05950 1ccd3f17a93f23822264392e53694275 273 PANTHER PTHR21666 146 272 4.1E-37 T 14-09-2016 PAJ_RS05950 1ccd3f17a93f23822264392e53694275 273 Pfam PF00877 NlpC/P60 family 155 265 9.8E-31 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS05950 1ccd3f17a93f23822264392e53694275 273 SUPERFAMILY SSF54001 136 267 7.36E-39 T 14-09-2016 PAJ_RS05950 1ccd3f17a93f23822264392e53694275 273 Gene3D G3DSA:3.90.1720.10 135 268 3.7E-44 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS01080 02ec0b50e93a2f4364d761fa3bd2956e 180 PANTHER PTHR23418 7 178 7.7E-32 T 14-09-2016 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|UniPathway: UPA00904 PAJ_RS01080 02ec0b50e93a2f4364d761fa3bd2956e 180 Gene3D G3DSA:2.60.120.10 4 179 2.5E-57 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS01080 02ec0b50e93a2f4364d761fa3bd2956e 180 Pfam PF03079 ARD/ARD' family 5 165 6.3E-36 T 14-09-2016 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|UniPathway: UPA00904 PAJ_RS01080 02ec0b50e93a2f4364d761fa3bd2956e 180 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 37.525 T 14-09-2016 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.53+1.13.11.54|MetaCyc: PWY-4361|MetaCyc: PWY-5389|UniPathway: UPA00904 PAJ_RS01080 02ec0b50e93a2f4364d761fa3bd2956e 180 SUPERFAMILY SSF51182 4 178 8.59E-44 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS06235 2427ee7faf0d4d5ac6f4a0f3e2df762b 71 SUPERFAMILY SSF68989 1 70 3.53E-21 T 14-09-2016 IPR007985 Haemolysin expression modulating, HHA PAJ_RS06235 2427ee7faf0d4d5ac6f4a0f3e2df762b 71 Gene3D G3DSA:1.20.1280.40 1 70 4.7E-31 T 14-09-2016 IPR007985 Haemolysin expression modulating, HHA PAJ_RS06235 2427ee7faf0d4d5ac6f4a0f3e2df762b 71 Pfam PF05321 Haemolysin expression modulating protein 8 68 4.6E-26 T 14-09-2016 IPR007985 Haemolysin expression modulating, HHA PAJ_RS15035 6261c0fb0156df8f7c69ee31c4246d68 186 Pfam PF01292 Prokaryotic cytochrome b561 15 180 3.9E-9 T 14-09-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 PAJ_RS05580 74ba87ce34b46a244feae8ad0b248131 407 Pfam PF03861 ANTAR domain 347 399 2.2E-18 T 14-09-2016 IPR005561 ANTAR domain GO:0003723 PAJ_RS05580 74ba87ce34b46a244feae8ad0b248131 407 SUPERFAMILY SSF52172 325 399 1.04E-15 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS05580 74ba87ce34b46a244feae8ad0b248131 407 Gene3D G3DSA:1.10.10.10 348 403 1.5E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05580 74ba87ce34b46a244feae8ad0b248131 407 Pfam PF08376 Nitrate and nitrite sensing 34 267 4.5E-43 T 14-09-2016 IPR013587 Nitrate/nitrite sensing protein PAJ_RS05580 74ba87ce34b46a244feae8ad0b248131 407 SMART SM01012 344 399 1.2E-19 T 14-09-2016 IPR005561 ANTAR domain GO:0003723 PAJ_RS16995 6d8bbfc9223906eb4117fd873c639866 258 Pfam PF00696 Amino acid kinase family 5 235 3.4E-39 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS16995 6d8bbfc9223906eb4117fd873c639866 258 PANTHER PTHR23342 3 257 9.0E-98 T 14-09-2016 PAJ_RS16995 6d8bbfc9223906eb4117fd873c639866 258 TIGRFAM TIGR00761 argB: acetylglutamate kinase 5 234 1.2E-75 T 14-09-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16995 6d8bbfc9223906eb4117fd873c639866 258 PIRSF PIRSF000728 1 258 2.8E-74 T 14-09-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS16995 6d8bbfc9223906eb4117fd873c639866 258 Gene3D G3DSA:3.40.1160.10 3 257 7.8E-79 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS16995 6d8bbfc9223906eb4117fd873c639866 258 SUPERFAMILY SSF53633 3 257 5.63E-61 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PAJ_RS16995 6d8bbfc9223906eb4117fd873c639866 258 Hamap MF_00082_B Acetylglutamate kinase [argB]. 1 258 27.75 T 14-09-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PAJ_RS04560 5634d1e7508836b02fddaa249a19c49c 308 PANTHER PTHR11825 38 306 5.8E-82 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PAJ_RS04560 5634d1e7508836b02fddaa249a19c49c 308 ProSitePatterns PS00770 Aminotransferases class-IV signature. 209 238 - T 14-09-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 PAJ_RS04560 5634d1e7508836b02fddaa249a19c49c 308 PANTHER PTHR11825:SF55 38 306 5.8E-82 T 14-09-2016 PAJ_RS04560 5634d1e7508836b02fddaa249a19c49c 308 Gene3D G3DSA:3.30.470.10 38 144 6.4E-32 T 14-09-2016 PAJ_RS04560 5634d1e7508836b02fddaa249a19c49c 308 Pfam PF01063 Amino-transferase class IV 60 282 1.0E-48 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PAJ_RS04560 5634d1e7508836b02fddaa249a19c49c 308 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 39 299 4.6E-111 T 14-09-2016 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543|UniPathway: UPA00077 PAJ_RS04560 5634d1e7508836b02fddaa249a19c49c 308 Gene3D G3DSA:3.20.10.10 158 297 5.7E-41 T 14-09-2016 PAJ_RS04560 5634d1e7508836b02fddaa249a19c49c 308 SUPERFAMILY SSF56752 38 291 1.01E-69 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 Pfam PF12833 Helix-turn-helix domain 204 283 1.5E-20 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 SUPERFAMILY SSF46689 235 286 4.39E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 SUPERFAMILY SSF51215 12 168 2.88E-33 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 Pfam PF02311 AraC-like ligand binding domain 27 161 3.9E-24 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 PANTHER PTHR11019 1 289 3.8E-126 T 14-09-2016 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 Gene3D G3DSA:2.60.120.280 13 173 6.5E-44 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 PANTHER PTHR11019:SF123 1 289 3.8E-126 T 14-09-2016 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 Gene3D G3DSA:1.10.10.60 235 286 6.6E-18 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 SUPERFAMILY SSF46689 181 231 3.05E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 Gene3D G3DSA:1.10.10.60 176 234 3.4E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 250 265 1.1E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 265 281 1.1E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 235 277 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS06430 35bc7449ebbcdf83459eacc8c3a68a69 305 SMART SM00342 198 281 7.7E-32 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS10710 f02cac2be2c3d866272bec3ad618c1f2 266 PANTHER PTHR35010:SF2 10 261 6.5E-58 T 14-09-2016 PAJ_RS10710 f02cac2be2c3d866272bec3ad618c1f2 266 Gene3D G3DSA:1.10.260.40 5 81 3.9E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS10710 f02cac2be2c3d866272bec3ad618c1f2 266 PANTHER PTHR35010 10 261 6.5E-58 T 14-09-2016 PAJ_RS10710 f02cac2be2c3d866272bec3ad618c1f2 266 Pfam PF13560 Helix-turn-helix domain 8 85 6.5E-18 T 14-09-2016 PAJ_RS10710 f02cac2be2c3d866272bec3ad618c1f2 266 SMART SM00530 10 82 6.2E-8 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS10710 f02cac2be2c3d866272bec3ad618c1f2 266 SUPERFAMILY SSF47413 31 80 3.66E-10 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS08135 a2430400b5beac72269c0d1c51b027a9 90 Pfam PF13974 YebO-like protein 16 90 4.8E-31 T 14-09-2016 IPR025594 YebO-like protein PAJ_RS12005 1f5aa2342db76b9ecd9a8e318a4107c4 212 Pfam PF12710 haloacid dehalogenase-like hydrolase 10 193 1.5E-13 T 14-09-2016 PAJ_RS12005 1f5aa2342db76b9ecd9a8e318a4107c4 212 Gene3D G3DSA:3.40.50.1000 101 119 3.4E-5 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS12005 1f5aa2342db76b9ecd9a8e318a4107c4 212 Gene3D G3DSA:3.40.50.1000 6 31 3.4E-5 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS12005 1f5aa2342db76b9ecd9a8e318a4107c4 212 Gene3D G3DSA:3.40.50.1000 120 210 3.4E-5 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS12005 1f5aa2342db76b9ecd9a8e318a4107c4 212 SUPERFAMILY SSF56784 8 170 2.36E-7 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS12005 1f5aa2342db76b9ecd9a8e318a4107c4 212 TIGRFAM TIGR01545 YfhB_g-proteo: HAD hydrolase, family IF 6 212 5.3E-116 T 14-09-2016 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PAJ_RS04315 4f3c260f6169d339377a24f726c0f084 374 Pfam PF01757 Acyltransferase family 10 354 6.7E-31 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 PAJ_RS04315 4f3c260f6169d339377a24f726c0f084 374 PANTHER PTHR36927 7 371 2.0E-51 T 14-09-2016 PAJ_RS09865 8637de26598a54ecad19344d9a90437f 513 Gene3D G3DSA:3.90.1200.10 352 429 1.5E-6 T 14-09-2016 PAJ_RS09865 8637de26598a54ecad19344d9a90437f 513 Pfam PF02958 Ecdysteroid kinase 308 424 1.6E-5 T 14-09-2016 IPR004119 Protein of unknown function DUF227 PAJ_RS09865 8637de26598a54ecad19344d9a90437f 513 SUPERFAMILY SSF53448 21 142 5.87E-6 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS09865 8637de26598a54ecad19344d9a90437f 513 SUPERFAMILY SSF56112 226 424 1.31E-11 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS09865 8637de26598a54ecad19344d9a90437f 513 Gene3D G3DSA:3.90.550.10 21 119 6.8E-5 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS05625 e0d889e2db057e984060c62482287c18 311 Pfam PF13407 Periplasmic binding protein domain 29 279 2.4E-50 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS05625 e0d889e2db057e984060c62482287c18 311 Gene3D G3DSA:3.40.50.2300 26 139 3.5E-30 T 14-09-2016 PAJ_RS05625 e0d889e2db057e984060c62482287c18 311 Gene3D G3DSA:3.40.50.2300 140 303 5.3E-43 T 14-09-2016 PAJ_RS05625 e0d889e2db057e984060c62482287c18 311 PANTHER PTHR32196 24 310 3.3E-59 T 14-09-2016 PAJ_RS05625 e0d889e2db057e984060c62482287c18 311 PANTHER PTHR32196:SF9 24 310 3.3E-59 T 14-09-2016 PAJ_RS05625 e0d889e2db057e984060c62482287c18 311 SUPERFAMILY SSF53822 25 303 9.26E-69 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS14840 d6c3aa3dae1e5abecf239a4cbf187383 642 SUPERFAMILY SSF58104 360 641 9.02E-68 T 14-09-2016 PAJ_RS14840 d6c3aa3dae1e5abecf239a4cbf187383 642 PANTHER PTHR32089:SF63 236 642 4.5E-124 T 14-09-2016 PAJ_RS14840 d6c3aa3dae1e5abecf239a4cbf187383 642 SMART SM00283 393 640 1.2E-81 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS14840 d6c3aa3dae1e5abecf239a4cbf187383 642 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 451 639 2.5E-54 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS14840 d6c3aa3dae1e5abecf239a4cbf187383 642 Gene3D G3DSA:1.10.287.950 408 612 9.6E-55 T 14-09-2016 PAJ_RS14840 d6c3aa3dae1e5abecf239a4cbf187383 642 SMART SM00304 340 392 6.1E-10 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS14840 d6c3aa3dae1e5abecf239a4cbf187383 642 Pfam PF00672 HAMP domain 321 387 6.2E-13 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS14840 d6c3aa3dae1e5abecf239a4cbf187383 642 PANTHER PTHR32089 236 642 4.5E-124 T 14-09-2016 PAJ_RS16100 395f60835344dfab5d1bd07f68f8a1d5 267 PANTHER PTHR32432 1 186 1.8E-13 T 14-09-2016 PAJ_RS16100 395f60835344dfab5d1bd07f68f8a1d5 267 Pfam PF11104 Type IV pilus assembly protein PilM; 9 170 9.3E-12 T 14-09-2016 IPR005883 Type IV pilus assembly protein PilM PAJ_RS16100 395f60835344dfab5d1bd07f68f8a1d5 267 PANTHER PTHR32432:SF3 1 186 1.8E-13 T 14-09-2016 PAJ_RS16100 395f60835344dfab5d1bd07f68f8a1d5 267 SUPERFAMILY SSF53067 22 161 3.5E-6 T 14-09-2016 PAJ_RS02620 706064627ffa730fdf42d21a8b4f07f9 94 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 89 1.3E-7 T 14-09-2016 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 PAJ_RS01100 0f6c1c274c13fe2dd0180c8bbf1dfa32 192 Pfam PF13580 SIS domain 25 146 1.2E-31 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PAJ_RS01100 0f6c1c274c13fe2dd0180c8bbf1dfa32 192 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 38.389 T 14-09-2016 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478|UniPathway: UPA00041 PAJ_RS01100 0f6c1c274c13fe2dd0180c8bbf1dfa32 192 Gene3D G3DSA:3.40.50.10490 1 189 2.7E-64 T 14-09-2016 PAJ_RS01100 0f6c1c274c13fe2dd0180c8bbf1dfa32 192 SUPERFAMILY SSF53697 1 189 8.9E-52 T 14-09-2016 PAJ_RS01100 0f6c1c274c13fe2dd0180c8bbf1dfa32 192 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 1.1E-82 T 14-09-2016 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478|UniPathway: UPA00041 PAJ_RS01100 0f6c1c274c13fe2dd0180c8bbf1dfa32 192 PANTHER PTHR30390 2 192 2.2E-93 T 14-09-2016 PAJ_RS01100 0f6c1c274c13fe2dd0180c8bbf1dfa32 192 PANTHER PTHR30390:SF6 2 192 2.2E-93 T 14-09-2016 PAJ_RS10250 ca83a7a0c62463969c9da6d308fcb268 428 PIRSF PIRSF004539 1 428 6.3E-127 T 14-09-2016 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 PAJ_RS10250 ca83a7a0c62463969c9da6d308fcb268 428 PANTHER PTHR36106:SF2 1 420 1.3E-139 T 14-09-2016 PAJ_RS10250 ca83a7a0c62463969c9da6d308fcb268 428 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 361 3.3E-102 T 14-09-2016 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 PAJ_RS10250 ca83a7a0c62463969c9da6d308fcb268 428 PANTHER PTHR36106 1 420 1.3E-139 T 14-09-2016 PAJ_RS10250 ca83a7a0c62463969c9da6d308fcb268 428 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 427 1.7E-129 T 14-09-2016 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 PAJ_RS09755 0644a87ed06ebe09f09006aaab72c844 452 PANTHER PTHR11785 10 451 9.9E-299 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS09755 0644a87ed06ebe09f09006aaab72c844 452 PANTHER PTHR11785:SF350 10 451 9.9E-299 T 14-09-2016 PAJ_RS09755 0644a87ed06ebe09f09006aaab72c844 452 Pfam PF13520 Amino acid permease 41 411 1.2E-34 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS09755 0644a87ed06ebe09f09006aaab72c844 452 PIRSF PIRSF006060 2 446 5.4E-74 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PAJ_RS04115 45213e9d88a58933e7872710f98ab243 149 Pfam PF02556 Preprotein translocase subunit SecB 46 145 8.0E-6 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS04115 45213e9d88a58933e7872710f98ab243 149 Gene3D G3DSA:3.10.420.10 22 145 2.3E-14 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS04115 45213e9d88a58933e7872710f98ab243 149 SUPERFAMILY SSF54611 24 146 4.14E-12 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS03220 03280c6406d3852293a8a46119a1c711 263 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 4 260 7.5E-109 T 14-09-2016 IPR010247 N-formylglutamate deformylase PAJ_RS03220 03280c6406d3852293a8a46119a1c711 263 SUPERFAMILY SSF53187 3 258 3.14E-76 T 14-09-2016 PAJ_RS03220 03280c6406d3852293a8a46119a1c711 263 Pfam PF05013 N-formylglutamate amidohydrolase 12 229 7.3E-64 T 14-09-2016 IPR007709 N-formylglutamate amidohydrolase PAJ_RS03220 03280c6406d3852293a8a46119a1c711 263 Gene3D G3DSA:3.40.630.40 3 259 3.2E-86 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PAJ_RS09005 6897c66fc21c28df5025bcc2ad1c3c69 84 SUPERFAMILY SSF47598 6 45 1.0E-8 T 14-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 PAJ_RS09005 6897c66fc21c28df5025bcc2ad1c3c69 84 Gene3D G3DSA:1.10.1220.10 7 63 2.9E-9 T 14-09-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 PAJ_RS09005 6897c66fc21c28df5025bcc2ad1c3c69 84 Pfam PF03869 Arc-like DNA binding domain 15 45 2.0E-4 T 14-09-2016 IPR005569 Arc-like DNA binding domain GO:0003677 PAJ_RS17350 faebca72157e36dd6c6ed34b852599ba 324 PANTHER PTHR13832 8 237 3.9E-21 T 14-09-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 PAJ_RS17350 faebca72157e36dd6c6ed34b852599ba 324 SUPERFAMILY SSF81606 11 217 7.59E-24 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS17350 faebca72157e36dd6c6ed34b852599ba 324 PANTHER PTHR13832:SF278 8 237 3.9E-21 T 14-09-2016 PAJ_RS17350 faebca72157e36dd6c6ed34b852599ba 324 SMART SM00332 2 215 0.0063 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS17350 faebca72157e36dd6c6ed34b852599ba 324 Gene3D G3DSA:3.60.40.10 12 217 3.4E-26 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PAJ_RS13490 499da4d936e642b0448937209ad3ba35 197 Pfam PF01725 Ham1 family 4 192 3.9E-56 T 14-09-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 PAJ_RS13490 499da4d936e642b0448937209ad3ba35 197 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 2 196 49.446 T 14-09-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 PAJ_RS13490 499da4d936e642b0448937209ad3ba35 197 Gene3D G3DSA:3.90.950.10 1 196 8.0E-81 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PAJ_RS13490 499da4d936e642b0448937209ad3ba35 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 193 6.8E-68 T 14-09-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 PAJ_RS13490 499da4d936e642b0448937209ad3ba35 197 SUPERFAMILY SSF52972 1 195 1.73E-73 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PAJ_RS13490 499da4d936e642b0448937209ad3ba35 197 PANTHER PTHR11067:SF9 1 197 6.2E-87 T 14-09-2016 PAJ_RS13490 499da4d936e642b0448937209ad3ba35 197 PANTHER PTHR11067 1 197 6.2E-87 T 14-09-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 PAJ_RS08855 78d9404f9f4d3c23a958b439b4c13f71 79 Pfam PF06183 DinI-like family 17 76 7.5E-19 T 14-09-2016 IPR010391 DNA damage-inducible protein DinI-like PAJ_RS08855 78d9404f9f4d3c23a958b439b4c13f71 79 SUPERFAMILY SSF54857 1 78 5.1E-21 T 14-09-2016 IPR010391 DNA damage-inducible protein DinI-like PAJ_RS08855 78d9404f9f4d3c23a958b439b4c13f71 79 Gene3D G3DSA:3.30.910.10 1 78 1.4E-22 T 14-09-2016 IPR010391 DNA damage-inducible protein DinI-like PAJ_RS08855 78d9404f9f4d3c23a958b439b4c13f71 79 PANTHER PTHR36572:SF1 2 79 7.5E-38 T 14-09-2016 PAJ_RS08855 78d9404f9f4d3c23a958b439b4c13f71 79 PANTHER PTHR36572 2 79 7.5E-38 T 14-09-2016 PAJ_RS10395 dd48c013ace5f2b73ebcdc3f411f97e7 563 ProSitePatterns PS00211 ABC transporters family signature. 490 504 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS10395 dd48c013ace5f2b73ebcdc3f411f97e7 563 Gene3D G3DSA:1.20.1560.10 33 353 1.9E-8 T 14-09-2016 PAJ_RS10395 dd48c013ace5f2b73ebcdc3f411f97e7 563 PANTHER PTHR11384 15 560 3.9E-147 T 14-09-2016 PAJ_RS10395 dd48c013ace5f2b73ebcdc3f411f97e7 563 SUPERFAMILY SSF52540 355 559 2.89E-37 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10395 dd48c013ace5f2b73ebcdc3f411f97e7 563 SUPERFAMILY SSF90123 31 345 6.02E-20 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS10395 dd48c013ace5f2b73ebcdc3f411f97e7 563 Gene3D G3DSA:3.40.50.300 368 550 1.4E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10395 dd48c013ace5f2b73ebcdc3f411f97e7 563 PANTHER PTHR11384:SF3 15 560 3.9E-147 T 14-09-2016 PAJ_RS10395 dd48c013ace5f2b73ebcdc3f411f97e7 563 Pfam PF00005 ABC transporter 388 518 1.3E-18 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10395 dd48c013ace5f2b73ebcdc3f411f97e7 563 SMART SM00382 392 563 1.1E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10395 dd48c013ace5f2b73ebcdc3f411f97e7 563 Pfam PF06472 ABC transporter transmembrane region 2 20 294 9.8E-50 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS10885 0bde55c9cef6b0d081a336421c6b4b16 267 PANTHER PTHR30269 6 258 1.0E-104 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PAJ_RS10885 0bde55c9cef6b0d081a336421c6b4b16 267 PANTHER PTHR30269:SF0 6 258 1.0E-104 T 14-09-2016 PAJ_RS10885 0bde55c9cef6b0d081a336421c6b4b16 267 Pfam PF01925 Sulfite exporter TauE/SafE 14 249 6.4E-44 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PAJ_RS07270 85c8520d57b9bff945a9f4bb97d66636 394 Gene3D G3DSA:1.20.1250.20 11 195 5.2E-25 T 14-09-2016 PAJ_RS07270 85c8520d57b9bff945a9f4bb97d66636 394 Pfam PF07690 Major Facilitator Superfamily 18 349 1.9E-29 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS07270 85c8520d57b9bff945a9f4bb97d66636 394 PANTHER PTHR23501:SF89 1 391 1.0E-205 T 14-09-2016 PAJ_RS07270 85c8520d57b9bff945a9f4bb97d66636 394 Gene3D G3DSA:1.20.1250.20 207 387 3.8E-10 T 14-09-2016 PAJ_RS07270 85c8520d57b9bff945a9f4bb97d66636 394 SUPERFAMILY SSF103473 6 388 1.57E-49 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS07270 85c8520d57b9bff945a9f4bb97d66636 394 PANTHER PTHR23501 1 391 1.0E-205 T 14-09-2016 PAJ_RS19445 dea2219bdbb6fab86c61ce7be5dcade4 332 PANTHER PTHR11091 1 332 1.1E-193 T 14-09-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS19445 dea2219bdbb6fab86c61ce7be5dcade4 332 SUPERFAMILY SSF89733 1 332 1.7E-94 T 14-09-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS19445 dea2219bdbb6fab86c61ce7be5dcade4 332 PANTHER PTHR11091:SF3 1 332 1.1E-193 T 14-09-2016 PAJ_RS19445 dea2219bdbb6fab86c61ce7be5dcade4 332 Gene3D G3DSA:3.30.60.50 181 219 5.0E-22 T 14-09-2016 PAJ_RS19445 dea2219bdbb6fab86c61ce7be5dcade4 332 Pfam PF02615 Malate/L-lactate dehydrogenase 3 330 1.9E-101 T 14-09-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PAJ_RS19445 dea2219bdbb6fab86c61ce7be5dcade4 332 Gene3D G3DSA:1.10.1530.10 1 73 1.2E-24 T 14-09-2016 PAJ_RS19445 dea2219bdbb6fab86c61ce7be5dcade4 332 Gene3D G3DSA:3.30.1370.60 220 269 9.1E-54 T 14-09-2016 PAJ_RS19445 dea2219bdbb6fab86c61ce7be5dcade4 332 Gene3D G3DSA:3.30.1370.60 74 170 9.1E-54 T 14-09-2016 PAJ_RS05000 642b5807bc87e80c24b164ce5b17c120 521 Pfam PF00361 Proton-conducting membrane transporter 122 373 2.2E-38 T 14-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 PAJ_RS05000 642b5807bc87e80c24b164ce5b17c120 521 PANTHER PTHR22773:SF67 72 351 1.9E-93 T 14-09-2016 PAJ_RS05000 642b5807bc87e80c24b164ce5b17c120 521 PANTHER PTHR22773 72 351 1.9E-93 T 14-09-2016 PAJ_RS05000 642b5807bc87e80c24b164ce5b17c120 521 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 146 167 5.5E-16 T 14-09-2016 PAJ_RS05000 642b5807bc87e80c24b164ce5b17c120 521 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 234 260 5.5E-16 T 14-09-2016 PAJ_RS05000 642b5807bc87e80c24b164ce5b17c120 521 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 212 233 5.5E-16 T 14-09-2016 PAJ_RS05000 642b5807bc87e80c24b164ce5b17c120 521 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 301 313 5.5E-16 T 14-09-2016 PAJ_RS05000 642b5807bc87e80c24b164ce5b17c120 521 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 71 96 5.5E-16 T 14-09-2016 PAJ_RS04525 4f44a2277d2bba7e430399aa7ec521ef 56 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 4.1E-20 T 14-09-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 PAJ_RS04525 4f44a2277d2bba7e430399aa7ec521ef 56 Pfam PF01783 Ribosomal L32p protein family 2 54 8.4E-20 T 14-09-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 PAJ_RS04525 4f44a2277d2bba7e430399aa7ec521ef 56 PANTHER PTHR35534 1 56 1.3E-28 T 14-09-2016 PAJ_RS04525 4f44a2277d2bba7e430399aa7ec521ef 56 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.124 T 14-09-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 PAJ_RS04525 4f44a2277d2bba7e430399aa7ec521ef 56 SUPERFAMILY SSF57829 2 54 2.93E-18 T 14-09-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 PAJ_RS19505 d13d19e59a9151a445e4dd3c1534804a 417 PANTHER PTHR31490 90 402 1.1E-78 T 14-09-2016 PAJ_RS19505 d13d19e59a9151a445e4dd3c1534804a 417 SUPERFAMILY SSF51445 90 411 6.81E-85 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS19505 d13d19e59a9151a445e4dd3c1534804a 417 Gene3D G3DSA:3.20.20.80 88 411 1.4E-85 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS19505 d13d19e59a9151a445e4dd3c1534804a 417 PRINTS PR00134 Glycosyl hydrolase family 10 signature 285 297 1.3E-10 T 14-09-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 PAJ_RS19505 d13d19e59a9151a445e4dd3c1534804a 417 PRINTS PR00134 Glycosyl hydrolase family 10 signature 204 215 1.3E-10 T 14-09-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 PAJ_RS19505 d13d19e59a9151a445e4dd3c1534804a 417 PRINTS PR00134 Glycosyl hydrolase family 10 signature 161 173 1.3E-10 T 14-09-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 PAJ_RS19505 d13d19e59a9151a445e4dd3c1534804a 417 PRINTS PR00134 Glycosyl hydrolase family 10 signature 252 263 1.3E-10 T 14-09-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 PAJ_RS19505 d13d19e59a9151a445e4dd3c1534804a 417 Pfam PF00331 Glycosyl hydrolase family 10 87 407 6.0E-74 T 14-09-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 PAJ_RS19505 d13d19e59a9151a445e4dd3c1534804a 417 SMART SM00633 130 410 5.9E-51 T 14-09-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 PAJ_RS04175 a2bba8cd8d98079655c82acfe9adcd0e 150 Pfam PF16463 Phage tail tube protein family 11 147 2.6E-79 T 14-09-2016 IPR032493 Phage tail tube protein family PAJ_RS08090 258933728c414aa1be41c7bd2159228d 520 SMART SM00052 265 506 1.1E-95 T 14-09-2016 IPR001633 EAL domain PAJ_RS08090 258933728c414aa1be41c7bd2159228d 520 Gene3D G3DSA:3.20.20.450 272 514 1.7E-74 T 14-09-2016 IPR001633 EAL domain PAJ_RS08090 258933728c414aa1be41c7bd2159228d 520 SUPERFAMILY SSF141868 273 515 1.96E-73 T 14-09-2016 IPR001633 EAL domain PAJ_RS08090 258933728c414aa1be41c7bd2159228d 520 PANTHER PTHR33121:SF9 1 511 1.1E-138 T 14-09-2016 PAJ_RS08090 258933728c414aa1be41c7bd2159228d 520 PANTHER PTHR33121 1 511 1.1E-138 T 14-09-2016 PAJ_RS08090 258933728c414aa1be41c7bd2159228d 520 Pfam PF00563 EAL domain 276 501 1.2E-62 T 14-09-2016 IPR001633 EAL domain PAJ_RS08090 258933728c414aa1be41c7bd2159228d 520 Pfam PF12792 CSS motif domain associated with EAL 44 234 1.4E-25 T 14-09-2016 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain PAJ_RS05515 15b9b3ec40ac2c3d0682fe9f022ed4f7 269 Gene3D G3DSA:1.25.40.10 187 251 9.6E-5 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS05515 15b9b3ec40ac2c3d0682fe9f022ed4f7 269 PANTHER PTHR31350 24 265 9.3E-46 T 14-09-2016 PAJ_RS05515 15b9b3ec40ac2c3d0682fe9f022ed4f7 269 Pfam PF13371 Tetratricopeptide repeat 187 258 1.9E-25 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS05515 15b9b3ec40ac2c3d0682fe9f022ed4f7 269 Pfam PF13369 Transglutaminase-like superfamily 34 184 5.6E-43 T 14-09-2016 IPR032698 Protein SirB1, N-terminal PAJ_RS13505 3a0e04bf0fa4fc65a5480d3af79d6aba 153 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 53 69 - T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS13505 3a0e04bf0fa4fc65a5480d3af79d6aba 153 SUPERFAMILY SSF55804 2 146 4.32E-38 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS13505 3a0e04bf0fa4fc65a5480d3af79d6aba 153 Gene3D G3DSA:3.40.930.10 2 147 1.2E-50 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS13505 3a0e04bf0fa4fc65a5480d3af79d6aba 153 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 8 146 1.3E-33 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS13505 3a0e04bf0fa4fc65a5480d3af79d6aba 153 PANTHER PTHR30505 1 138 2.8E-50 T 14-09-2016 PAJ_RS13505 3a0e04bf0fa4fc65a5480d3af79d6aba 153 PANTHER PTHR30505:SF3 1 138 2.8E-50 T 14-09-2016 PAJ_RS17165 da72fc5796c467bc3309f49aaac07180 273 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 82 242 1.1E-73 T 14-09-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 PAJ_RS17165 da72fc5796c467bc3309f49aaac07180 273 SUPERFAMILY SSF51161 8 260 1.11E-67 T 14-09-2016 IPR011004 Trimeric LpxA-like PAJ_RS17165 da72fc5796c467bc3309f49aaac07180 273 PANTHER PTHR23416 5 258 3.8E-156 T 14-09-2016 PAJ_RS17165 da72fc5796c467bc3309f49aaac07180 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 226 6.0E-10 T 14-09-2016 IPR001451 Hexapeptide repeat PAJ_RS17165 da72fc5796c467bc3309f49aaac07180 273 Gene3D G3DSA:2.160.10.10 143 250 9.5E-32 T 14-09-2016 PAJ_RS17165 da72fc5796c467bc3309f49aaac07180 273 PANTHER PTHR23416:SF2 5 258 3.8E-156 T 14-09-2016 PAJ_RS17165 da72fc5796c467bc3309f49aaac07180 273 Pfam PF06426 Serine acetyltransferase, N-terminal 9 113 1.5E-39 T 14-09-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 PAJ_RS17165 da72fc5796c467bc3309f49aaac07180 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PAJ_RS17165 da72fc5796c467bc3309f49aaac07180 273 SMART SM00971 9 113 3.5E-64 T 14-09-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 PAJ_RS17165 da72fc5796c467bc3309f49aaac07180 273 Gene3D G3DSA:1.10.3130.10 7 142 4.5E-51 T 14-09-2016 PAJ_RS04295 93fba0c68fb555cfdf3669d9fb3d8e16 366 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 305 3.9E-16 T 14-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PAJ_RS04295 93fba0c68fb555cfdf3669d9fb3d8e16 366 PANTHER PTHR30386 6 358 4.7E-87 T 14-09-2016 PAJ_RS04295 93fba0c68fb555cfdf3669d9fb3d8e16 366 PANTHER PTHR30386:SF0 6 358 4.7E-87 T 14-09-2016 PAJ_RS04295 93fba0c68fb555cfdf3669d9fb3d8e16 366 Pfam PF00529 HlyD membrane-fusion protein of T1SS 42 353 3.5E-11 T 14-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PAJ_RS04295 93fba0c68fb555cfdf3669d9fb3d8e16 366 SUPERFAMILY SSF111369 170 308 1.44E-10 T 14-09-2016 PAJ_RS04295 93fba0c68fb555cfdf3669d9fb3d8e16 366 Gene3D G3DSA:2.40.50.100 65 95 1.6E-17 T 14-09-2016 PAJ_RS04295 93fba0c68fb555cfdf3669d9fb3d8e16 366 Gene3D G3DSA:2.40.50.100 226 260 1.6E-17 T 14-09-2016 PAJ_RS04295 93fba0c68fb555cfdf3669d9fb3d8e16 366 SUPERFAMILY SSF111369 63 142 4.97E-12 T 14-09-2016 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 5.4E-18 T 14-09-2016 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 5.4E-18 T 14-09-2016 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 5.4E-18 T 14-09-2016 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 5.4E-18 T 14-09-2016 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 Pfam PF01494 FAD binding domain 4 345 2.3E-23 T 14-09-2016 IPR002938 FAD-binding domain GO:0071949 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 SUPERFAMILY SSF51905 4 177 2.96E-58 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 SUPERFAMILY SSF51905 268 385 2.96E-58 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 14-09-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 391 9.3E-129 T 14-09-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 PANTHER PTHR13789:SF5 1 400 4.2E-170 T 14-09-2016 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 PANTHER PTHR13789 1 400 4.2E-170 T 14-09-2016 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 Gene3D G3DSA:3.50.50.60 4 182 3.1E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS13325 ea804eea0752624786944489d6380b53 400 Gene3D G3DSA:3.50.50.60 269 357 3.1E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS20305 40550106bb7f56f3255be0e652dfa763 108 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 20 70 1.2E-14 T 14-09-2016 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 PAJ_RS07255 02d29b8c3d144d159a132c10e3419879 415 Gene3D G3DSA:1.20.1250.20 35 215 4.3E-32 T 14-09-2016 PAJ_RS07255 02d29b8c3d144d159a132c10e3419879 415 Gene3D G3DSA:1.20.1250.20 247 413 2.7E-13 T 14-09-2016 PAJ_RS07255 02d29b8c3d144d159a132c10e3419879 415 SUPERFAMILY SSF103473 22 413 6.8E-60 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS07255 02d29b8c3d144d159a132c10e3419879 415 PANTHER PTHR23501 12 413 8.6E-202 T 14-09-2016 PAJ_RS07255 02d29b8c3d144d159a132c10e3419879 415 Pfam PF07690 Major Facilitator Superfamily 40 258 5.0E-26 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS07255 02d29b8c3d144d159a132c10e3419879 415 ProSitePatterns PS00216 Sugar transport proteins signature 1. 90 106 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS07255 02d29b8c3d144d159a132c10e3419879 415 PANTHER PTHR23501:SF11 12 413 8.6E-202 T 14-09-2016 PAJ_RS13485 0e18ea7ceb7485a0f2a1f52fabc26976 184 PANTHER PTHR33219 3 184 1.4E-79 T 14-09-2016 PAJ_RS13485 0e18ea7ceb7485a0f2a1f52fabc26976 184 Pfam PF02325 YGGT family 10 76 1.2E-21 T 14-09-2016 IPR003425 CCB3/YggT GO:0016020 PAJ_RS13485 0e18ea7ceb7485a0f2a1f52fabc26976 184 Pfam PF02325 YGGT family 108 170 1.0E-17 T 14-09-2016 IPR003425 CCB3/YggT GO:0016020 PAJ_RS13485 0e18ea7ceb7485a0f2a1f52fabc26976 184 PANTHER PTHR33219:SF5 3 184 1.4E-79 T 14-09-2016 PAJ_RS00200 deb2858cfbf703d41e9d27a93795c85c 328 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 19 322 1.9E-145 T 14-09-2016 IPR005948 Thiamine ABC transporter periplasmic binding protein GO:0005215|GO:0006810|GO:0015888|GO:0030288|GO:0030975 PAJ_RS00200 deb2858cfbf703d41e9d27a93795c85c 328 PANTHER PTHR30006:SF3 1 327 4.1E-131 T 14-09-2016 PAJ_RS00200 deb2858cfbf703d41e9d27a93795c85c 328 Gene3D G3DSA:3.40.190.10 180 287 1.1E-8 T 14-09-2016 PAJ_RS00200 deb2858cfbf703d41e9d27a93795c85c 328 Gene3D G3DSA:3.40.190.10 22 168 3.4E-28 T 14-09-2016 PAJ_RS00200 deb2858cfbf703d41e9d27a93795c85c 328 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 120 137 - T 14-09-2016 IPR006061 Solute-binding family 1, conserved site GO:0005215|GO:0006810 PAJ_RS00200 deb2858cfbf703d41e9d27a93795c85c 328 SUPERFAMILY SSF53850 23 324 1.28E-64 T 14-09-2016 PAJ_RS00200 deb2858cfbf703d41e9d27a93795c85c 328 Pfam PF13416 Bacterial extracellular solute-binding protein 41 278 5.8E-18 T 14-09-2016 PAJ_RS00200 deb2858cfbf703d41e9d27a93795c85c 328 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 6 328 6.2E-170 T 14-09-2016 IPR005967 Proteobacterial thiamine ABC transporter, periplasmic binding protein GO:0005524|GO:0015888|GO:0030288|GO:0048502 PAJ_RS00200 deb2858cfbf703d41e9d27a93795c85c 328 PANTHER PTHR30006 1 327 4.1E-131 T 14-09-2016 PAJ_RS10590 91c84b17a8067b567f6243f8d129ac64 183 PANTHER PTHR33269:SF2 1 182 1.9E-99 T 14-09-2016 PAJ_RS10590 91c84b17a8067b567f6243f8d129ac64 183 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 17 158 1.3E-35 T 14-09-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 PAJ_RS10590 91c84b17a8067b567f6243f8d129ac64 183 PANTHER PTHR33269 1 182 1.9E-99 T 14-09-2016 PAJ_RS17560 add3bf68a36208da0544763ff425b0eb 139 Gene3D G3DSA:3.40.1650.10 1 139 7.7E-43 T 14-09-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 PAJ_RS17560 add3bf68a36208da0544763ff425b0eb 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 4.0E-49 T 14-09-2016 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 PAJ_RS17560 add3bf68a36208da0544763ff425b0eb 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 32.917 T 14-09-2016 IPR023064 D-ribose pyranase GO:0016872 UniPathway: UPA00916 PAJ_RS17560 add3bf68a36208da0544763ff425b0eb 139 PANTHER PTHR37831:SF1 2 139 4.7E-65 T 14-09-2016 PAJ_RS17560 add3bf68a36208da0544763ff425b0eb 139 SUPERFAMILY SSF102546 1 139 7.19E-45 T 14-09-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 PAJ_RS17560 add3bf68a36208da0544763ff425b0eb 139 PANTHER PTHR37831 2 139 4.7E-65 T 14-09-2016 PAJ_RS09125 cf2741b51208a1b73628e0a6550cffe6 80 Pfam PF03527 RHS protein 22 58 6.5E-13 T 14-09-2016 IPR001826 RHS protein PAJ_RS05295 91c47aab06328570e42bf90e8c816dc4 192 Gene3D G3DSA:1.20.950.20 7 79 2.4E-4 T 14-09-2016 PAJ_RS05295 91c47aab06328570e42bf90e8c816dc4 192 SUPERFAMILY SSF81342 7 187 3.77E-25 T 14-09-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PAJ_RS05295 91c47aab06328570e42bf90e8c816dc4 192 PANTHER PTHR30529:SF5 5 191 5.9E-41 T 14-09-2016 PAJ_RS05295 91c47aab06328570e42bf90e8c816dc4 192 Pfam PF01292 Prokaryotic cytochrome b561 12 187 6.0E-22 T 14-09-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 PAJ_RS05295 91c47aab06328570e42bf90e8c816dc4 192 PANTHER PTHR30529 5 191 5.9E-41 T 14-09-2016 PAJ_RS14440 30b08fbc69ea92a957f2ee754c1769d7 396 Gene3D G3DSA:3.40.640.10 6 258 1.3E-75 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS14440 30b08fbc69ea92a957f2ee754c1769d7 396 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS14440 30b08fbc69ea92a957f2ee754c1769d7 396 PANTHER PTHR11808 4 396 1.6E-256 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS14440 30b08fbc69ea92a957f2ee754c1769d7 396 PIRSF PIRSF001434 1 395 9.0E-119 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS14440 30b08fbc69ea92a957f2ee754c1769d7 396 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 8 394 6.5E-174 T 14-09-2016 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936|UniPathway: UPA00051 PAJ_RS14440 30b08fbc69ea92a957f2ee754c1769d7 396 Gene3D G3DSA:3.90.1150.10 259 394 1.7E-37 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS14440 30b08fbc69ea92a957f2ee754c1769d7 396 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 391 1.5E-114 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PAJ_RS14440 30b08fbc69ea92a957f2ee754c1769d7 396 PANTHER PTHR11808:SF45 4 396 1.6E-256 T 14-09-2016 PAJ_RS14440 30b08fbc69ea92a957f2ee754c1769d7 396 SUPERFAMILY SSF53383 21 393 1.92E-89 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS12980 41cdab5872347ee20acf0402057f507d 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.31 T 14-09-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 PAJ_RS12980 41cdab5872347ee20acf0402057f507d 545 PANTHER PTHR11550 1 543 0.0 T 14-09-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 PAJ_RS12980 41cdab5872347ee20acf0402057f507d 545 Pfam PF06418 CTP synthase N-terminus 5 266 3.1E-126 T 14-09-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 PAJ_RS12980 41cdab5872347ee20acf0402057f507d 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 2.4E-64 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PAJ_RS12980 41cdab5872347ee20acf0402057f507d 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 4.4E-266 T 14-09-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 PAJ_RS12980 41cdab5872347ee20acf0402057f507d 545 Gene3D G3DSA:3.40.50.880 289 541 3.2E-99 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS12980 41cdab5872347ee20acf0402057f507d 545 SUPERFAMILY SSF52317 289 541 2.66E-88 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS12980 41cdab5872347ee20acf0402057f507d 545 SUPERFAMILY SSF52540 3 269 9.21E-123 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS12980 41cdab5872347ee20acf0402057f507d 545 Gene3D G3DSA:3.40.50.300 1 280 2.2E-134 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00375 c0e476042439c288f9eb565c7610563c 65 PANTHER PTHR36150:SF1 3 65 5.8E-27 T 14-09-2016 PAJ_RS00375 c0e476042439c288f9eb565c7610563c 65 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 4 60 19.249 T 14-09-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 PAJ_RS00375 c0e476042439c288f9eb565c7610563c 65 Gene3D G3DSA:3.30.50.10 2 63 6.9E-27 T 14-09-2016 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 PAJ_RS00375 c0e476042439c288f9eb565c7610563c 65 PANTHER PTHR36150 3 65 5.8E-27 T 14-09-2016 PAJ_RS00375 c0e476042439c288f9eb565c7610563c 65 Pfam PF03884 Domain of unknown function (DUF329) 8 58 1.6E-24 T 14-09-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 PAJ_RS00375 c0e476042439c288f9eb565c7610563c 65 SUPERFAMILY SSF57716 5 63 2.85E-22 T 14-09-2016 PAJ_RS19635 e15732565ddeeeb3795c8c945c536b6a 342 Gene3D G3DSA:3.20.20.70 105 314 8.1E-17 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS19635 e15732565ddeeeb3795c8c945c536b6a 342 Pfam PF13353 4Fe-4S single cluster domain 111 179 2.7E-6 T 14-09-2016 PAJ_RS19635 e15732565ddeeeb3795c8c945c536b6a 342 Pfam PF04055 Radical SAM superfamily 118 263 5.4E-8 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PAJ_RS19635 e15732565ddeeeb3795c8c945c536b6a 342 SUPERFAMILY SSF102114 102 324 1.05E-25 T 14-09-2016 PAJ_RS19635 e15732565ddeeeb3795c8c945c536b6a 342 PANTHER PTHR30538 8 339 3.2E-140 T 14-09-2016 PAJ_RS19635 e15732565ddeeeb3795c8c945c536b6a 342 PANTHER PTHR30538:SF1 8 339 3.2E-140 T 14-09-2016 PAJ_RS19635 e15732565ddeeeb3795c8c945c536b6a 342 TIGRFAM TIGR00238 TIGR00238: KamA family protein 3 328 7.8E-136 T 14-09-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase PAJ_RS19635 e15732565ddeeeb3795c8c945c536b6a 342 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 15 335 2.3E-159 T 14-09-2016 IPR022462 Lysine-2,3-aminomutase-like PAJ_RS19635 e15732565ddeeeb3795c8c945c536b6a 342 PIRSF PIRSF004911 1 342 1.3E-118 T 14-09-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase PAJ_RS11375 91c2da831293d3df35fa4461f6b0b87c 206 Pfam PF06572 Protein of unknown function (DUF1131) 40 206 7.5E-72 T 14-09-2016 IPR010938 Protein of unknown function DUF1131 PAJ_RS11375 91c2da831293d3df35fa4461f6b0b87c 206 ProDom PD105195 LIPOPROTEIN YFEY MEMBRANE OUTER PRECURSOR SIGNAL ESCHERICHIA ECS3303 EXPORTED Y1456 1 206 4.0E-50 T 14-09-2016 IPR010938 Protein of unknown function DUF1131 PAJ_RS11375 91c2da831293d3df35fa4461f6b0b87c 206 Gene3D G3DSA:2.60.460.10 42 206 1.5E-71 T 14-09-2016 PAJ_RS12705 1407c05b1ab651555e6d37c89dc8ef89 265 Pfam PF01578 Cytochrome C assembly protein 36 260 7.2E-40 T 14-09-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 PAJ_RS12705 1407c05b1ab651555e6d37c89dc8ef89 265 PANTHER PTHR38034 2 263 2.8E-99 T 14-09-2016 PAJ_RS10540 34a49e52239f3b96ade72fc4391b05db 86 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 78 3.0E-10 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PAJ_RS10540 34a49e52239f3b96ade72fc4391b05db 86 Gene3D G3DSA:3.10.20.30 6 85 1.4E-17 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS10540 34a49e52239f3b96ade72fc4391b05db 86 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PAJ_RS10540 34a49e52239f3b96ade72fc4391b05db 86 SUPERFAMILY SSF54292 6 86 1.07E-19 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PAJ_RS14885 18243faf7398ddf6728709c092328712 79 SUPERFAMILY SSF47413 10 45 6.57E-5 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS14885 18243faf7398ddf6728709c092328712 79 Gene3D G3DSA:1.10.260.40 11 38 1.4E-4 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS14085 fabd9f2063b3d791003c0fe8d034b7e5 138 Gene3D G3DSA:3.40.630.30 1 128 1.6E-18 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS14085 fabd9f2063b3d791003c0fe8d034b7e5 138 SUPERFAMILY SSF55729 1 126 1.2E-18 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS14085 fabd9f2063b3d791003c0fe8d034b7e5 138 Pfam PF13673 Acetyltransferase (GNAT) domain 34 134 4.1E-14 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS17430 76d2a086f74f42e923c3b6e0c667c709 145 SUPERFAMILY SSF69500 1 144 4.32E-55 T 14-09-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain PAJ_RS17430 76d2a086f74f42e923c3b6e0c667c709 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 1.7E-51 T 14-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 PAJ_RS17430 76d2a086f74f42e923c3b6e0c667c709 145 Gene3D G3DSA:3.50.80.10 1 144 1.4E-54 T 14-09-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain PAJ_RS17430 76d2a086f74f42e923c3b6e0c667c709 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 1.9E-65 T 14-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 PAJ_RS17430 76d2a086f74f42e923c3b6e0c667c709 145 PANTHER PTHR10472 2 144 2.4E-70 T 14-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 PAJ_RS17430 76d2a086f74f42e923c3b6e0c667c709 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.117 T 14-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 PAJ_RS17265 b1e0642d4015d2c6292fa9158e265936 378 Gene3D G3DSA:3.40.50.2000 166 344 1.7E-28 T 14-09-2016 PAJ_RS17265 b1e0642d4015d2c6292fa9158e265936 378 SUPERFAMILY SSF53756 5 373 1.05E-67 T 14-09-2016 PAJ_RS17265 b1e0642d4015d2c6292fa9158e265936 378 Pfam PF00534 Glycosyl transferases group 1 196 352 3.7E-28 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 PAJ_RS17265 b1e0642d4015d2c6292fa9158e265936 378 Pfam PF13439 Glycosyltransferase Family 4 17 183 4.3E-17 T 14-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PAJ_RS17265 b1e0642d4015d2c6292fa9158e265936 378 PANTHER PTHR12526 1 377 2.0E-53 T 14-09-2016 PAJ_RS05730 9dcdd1cd56d0f43276ff5bd7a27870b7 196 PANTHER PTHR35531 1 193 2.3E-53 T 14-09-2016 PAJ_RS05730 9dcdd1cd56d0f43276ff5bd7a27870b7 196 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 158 4.9E-33 T 14-09-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase PAJ_RS05730 9dcdd1cd56d0f43276ff5bd7a27870b7 196 PIRSF PIRSF030780 1 195 9.9E-97 T 14-09-2016 IPR016956 Inner membrane protein YdjM PAJ_RS05730 9dcdd1cd56d0f43276ff5bd7a27870b7 196 PANTHER PTHR35531:SF1 1 193 2.3E-53 T 14-09-2016 PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 Pfam PF02384 N-6 DNA Methylase 154 457 7.4E-56 T 14-09-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 177 193 3.3E-10 T 14-09-2016 PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 210 224 3.3E-10 T 14-09-2016 PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 282 294 3.3E-10 T 14-09-2016 PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 Gene3D G3DSA:3.40.50.150 179 426 1.7E-28 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 Pfam PF12161 HsdM N-terminal domain 11 142 4.0E-19 T 14-09-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 PANTHER PTHR30195:SF10 470 770 1.7E-116 T 14-09-2016 PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 PANTHER PTHR30195:SF10 100 453 1.7E-116 T 14-09-2016 PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 PANTHER PTHR30195 470 770 1.7E-116 T 14-09-2016 PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 PANTHER PTHR30195 100 453 1.7E-116 T 14-09-2016 PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 SUPERFAMILY SSF53335 79 459 1.59E-112 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 SUPERFAMILY SSF53335 491 570 1.59E-112 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 SUPERFAMILY SSF53335 8 46 1.59E-112 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS20260 c81742099700c74783e2b54acfa60869 786 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 285 291 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS10440 f732b67d2ed7e305987299312e6199e7 417 Gene3D G3DSA:2.30.30.60 200 249 9.3E-11 T 14-09-2016 PAJ_RS10440 f732b67d2ed7e305987299312e6199e7 417 PANTHER PTHR30414 3 408 3.2E-97 T 14-09-2016 PAJ_RS10440 f732b67d2ed7e305987299312e6199e7 417 PANTHER PTHR30414:SF0 3 408 3.2E-97 T 14-09-2016 IPR030192 Miniconductance mechanosensitive channel YbdG GO:0008381|GO:0016021|GO:0071470 PAJ_RS10440 f732b67d2ed7e305987299312e6199e7 417 Pfam PF00924 Mechanosensitive ion channel 142 384 2.0E-36 T 14-09-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PAJ_RS10440 f732b67d2ed7e305987299312e6199e7 417 SUPERFAMILY SSF50182 183 249 6.21E-11 T 14-09-2016 IPR010920 LSM domain PAJ_RS12255 60a1edefd667e94e6d09b4573da32f23 319 SUPERFAMILY SSF81345 5 313 2.62E-66 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS12255 60a1edefd667e94e6d09b4573da32f23 319 PANTHER PTHR30472:SF27 8 319 3.6E-149 T 14-09-2016 PAJ_RS12255 60a1edefd667e94e6d09b4573da32f23 319 Gene3D G3DSA:1.10.3470.10 6 316 2.0E-68 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS12255 60a1edefd667e94e6d09b4573da32f23 319 PANTHER PTHR30472 8 319 3.6E-149 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS12255 60a1edefd667e94e6d09b4573da32f23 319 Pfam PF01032 FecCD transport family 12 313 8.4E-65 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS20470 7deacc9f748552c851a00c7260262dfd 158 Pfam PF07977 FabA-like domain 11 123 4.2E-7 T 14-09-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 PAJ_RS20470 7deacc9f748552c851a00c7260262dfd 158 SUPERFAMILY SSF54637 9 145 1.62E-21 T 14-09-2016 IPR029069 HotDog domain PAJ_RS20470 7deacc9f748552c851a00c7260262dfd 158 Gene3D G3DSA:3.10.129.10 8 140 1.0E-18 T 14-09-2016 IPR029069 HotDog domain PAJ_RS20470 7deacc9f748552c851a00c7260262dfd 158 PIRSF PIRSF020565 1 157 7.1E-49 T 14-09-2016 IPR016776 3-hydroxylacyl-(acyl carrier protein) dehydratase, predicted PAJ_RS02315 04f218e81bd95da8f7599806bb551615 297 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 53 292 9.2E-49 T 14-09-2016 IPR005218 Diacylglycerol/lipid kinase PAJ_RS02315 04f218e81bd95da8f7599806bb551615 297 SUPERFAMILY SSF111331 4 294 2.4E-74 T 14-09-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain PAJ_RS02315 04f218e81bd95da8f7599806bb551615 297 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 126 3.1E-24 T 14-09-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 PAJ_RS02315 04f218e81bd95da8f7599806bb551615 297 Gene3D G3DSA:3.40.50.10330 6 93 1.9E-5 T 14-09-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PAJ_RS02315 04f218e81bd95da8f7599806bb551615 297 PANTHER PTHR12358:SF43 59 295 2.4E-56 T 14-09-2016 PAJ_RS02315 04f218e81bd95da8f7599806bb551615 297 PANTHER PTHR12358 59 295 2.4E-56 T 14-09-2016 PAJ_RS02315 04f218e81bd95da8f7599806bb551615 297 SMART SM00046 7 124 4.6E-6 T 14-09-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 PAJ_RS06565 e79559984f2dace11d343da1449d4791 251 PANTHER PTHR40279 7 250 2.0E-132 T 14-09-2016 PAJ_RS06565 e79559984f2dace11d343da1449d4791 251 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 251 137.572 T 14-09-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 PAJ_RS06565 e79559984f2dace11d343da1449d4791 251 Pfam PF03070 TENA/THI-4/PQQC family 14 223 2.5E-64 T 14-09-2016 IPR004305 Thiaminase-2/PQQC PAJ_RS06565 e79559984f2dace11d343da1449d4791 251 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 7 241 1.2E-118 T 14-09-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 PAJ_RS06565 e79559984f2dace11d343da1449d4791 251 PANTHER PTHR40279:SF2 7 250 2.0E-132 T 14-09-2016 PAJ_RS06565 e79559984f2dace11d343da1449d4791 251 Gene3D G3DSA:1.20.910.10 4 250 3.3E-125 T 14-09-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PAJ_RS06565 e79559984f2dace11d343da1449d4791 251 SUPERFAMILY SSF48613 6 248 2.22E-77 T 14-09-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PAJ_RS11940 dabc822f1bfc219ff1d786e8027487be 326 Pfam PF03824 High-affinity nickel-transport protein 194 312 1.7E-14 T 14-09-2016 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 PAJ_RS11940 dabc822f1bfc219ff1d786e8027487be 326 Pfam PF03824 High-affinity nickel-transport protein 69 190 3.8E-21 T 14-09-2016 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 PAJ_RS11940 dabc822f1bfc219ff1d786e8027487be 326 PANTHER PTHR40659 1 326 1.2E-64 T 14-09-2016 PAJ_RS16325 911e6d2deff4592866dc57db0822ec4f 255 PANTHER PTHR24220:SF358 128 254 2.9E-127 T 14-09-2016 PAJ_RS16325 911e6d2deff4592866dc57db0822ec4f 255 PANTHER PTHR24220:SF358 7 112 2.9E-127 T 14-09-2016 PAJ_RS16325 911e6d2deff4592866dc57db0822ec4f 255 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS16325 911e6d2deff4592866dc57db0822ec4f 255 SUPERFAMILY SSF52540 4 253 1.78E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16325 911e6d2deff4592866dc57db0822ec4f 255 PANTHER PTHR24220 128 254 2.9E-127 T 14-09-2016 PAJ_RS16325 911e6d2deff4592866dc57db0822ec4f 255 SMART SM00382 30 230 7.9E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16325 911e6d2deff4592866dc57db0822ec4f 255 Pfam PF00005 ABC transporter 21 181 3.1E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS16325 911e6d2deff4592866dc57db0822ec4f 255 PANTHER PTHR24220 7 112 2.9E-127 T 14-09-2016 PAJ_RS16325 911e6d2deff4592866dc57db0822ec4f 255 Gene3D G3DSA:3.40.50.300 2 251 3.6E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16325 911e6d2deff4592866dc57db0822ec4f 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 233 253 5.6E-11 T 14-09-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PAJ_RS04610 1ee1a0cc8f90b563ae8232eb15851560 278 SUPERFAMILY SSF56112 16 259 9.04E-27 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS04610 1ee1a0cc8f90b563ae8232eb15851560 278 Gene3D G3DSA:3.90.1200.10 84 262 4.4E-16 T 14-09-2016 PAJ_RS04610 1ee1a0cc8f90b563ae8232eb15851560 278 Pfam PF01636 Phosphotransferase enzyme family 32 226 1.9E-15 T 14-09-2016 IPR002575 Aminoglycoside phosphotransferase PAJ_RS09230 ed0f937a76e6845659f2495489b321dc 191 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 36 186 8.6E-18 T 14-09-2016 IPR017737 Type VI secretion system, lysozyme-related protein PAJ_RS09230 ed0f937a76e6845659f2495489b321dc 191 PANTHER PTHR38595 27 184 7.9E-40 T 14-09-2016 PAJ_RS09230 ed0f937a76e6845659f2495489b321dc 191 Pfam PF04965 Gene 25-like lysozyme 63 167 1.1E-20 T 14-09-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD PAJ_RS09230 ed0f937a76e6845659f2495489b321dc 191 PANTHER PTHR38595:SF2 27 184 7.9E-40 T 14-09-2016 PAJ_RS09230 ed0f937a76e6845659f2495489b321dc 191 SUPERFAMILY SSF160719 62 178 6.02E-9 T 14-09-2016 PAJ_RS20480 39202ce27928b02f138a935a659bc070 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 247 2.1E-41 T 14-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal PAJ_RS20480 39202ce27928b02f138a935a659bc070 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 364 1.3E-30 T 14-09-2016 IPR014031 Beta-ketoacyl synthase, C-terminal PAJ_RS20480 39202ce27928b02f138a935a659bc070 409 PANTHER PTHR11712 3 408 7.0E-108 T 14-09-2016 PAJ_RS20480 39202ce27928b02f138a935a659bc070 409 Gene3D G3DSA:3.40.47.10 264 408 8.2E-49 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS20480 39202ce27928b02f138a935a659bc070 409 SMART SM00825 Beta-ketoacyl synthase 5 378 5.5E-12 T 14-09-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PAJ_RS20480 39202ce27928b02f138a935a659bc070 409 SUPERFAMILY SSF53901 3 252 2.02E-54 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS20480 39202ce27928b02f138a935a659bc070 409 Gene3D G3DSA:3.40.47.10 2 260 1.2E-55 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS20480 39202ce27928b02f138a935a659bc070 409 SUPERFAMILY SSF53901 216 408 1.09E-60 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PAJ_RS20480 39202ce27928b02f138a935a659bc070 409 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 14-09-2016 IPR018201 Beta-ketoacyl synthase, active site PAJ_RS13205 3c71aaf23b856aee38e03e433d77f580 225 Gene3D G3DSA:3.40.600.10 5 223 4.5E-79 T 14-09-2016 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 PAJ_RS13205 3c71aaf23b856aee38e03e433d77f580 225 SUPERFAMILY SSF52980 5 224 2.52E-78 T 14-09-2016 IPR011335 Restriction endonuclease type II-like PAJ_RS13205 3c71aaf23b856aee38e03e433d77f580 225 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 8 223 7.3E-109 T 14-09-2016 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 PAJ_RS13205 3c71aaf23b856aee38e03e433d77f580 225 Pfam PF02976 DNA mismatch repair enzyme MutH 56 154 4.3E-34 T 14-09-2016 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 PAJ_RS13205 3c71aaf23b856aee38e03e433d77f580 225 SMART SM00927 56 154 9.9E-64 T 14-09-2016 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 PAJ_RS13205 3c71aaf23b856aee38e03e433d77f580 225 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 225 150.774 T 14-09-2016 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 Pfam PF13412 Winged helix-turn-helix DNA-binding 7 53 1.2E-17 T 14-09-2016 PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 SMART SM00344 7 116 2.5E-35 T 14-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 Gene3D G3DSA:3.30.70.920 63 144 4.4E-18 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 PANTHER PTHR30154 1 147 4.5E-44 T 14-09-2016 PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 Gene3D G3DSA:1.10.10.10 8 59 2.0E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 PANTHER PTHR30154:SF28 1 147 4.5E-44 T 14-09-2016 PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 Pfam PF01037 Lrp/AsnC ligand binding domain 74 147 5.2E-16 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 SUPERFAMILY SSF46785 7 66 2.9E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 6.4E-15 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 6.4E-15 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 6.4E-15 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PAJ_RS06345 dd20422ff2b75029f4fb174f5ce9cc14 167 SUPERFAMILY SSF54909 69 149 3.49E-14 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS01060 2f36a2239846a0e181dbccf561927ae3 257 Gene3D G3DSA:3.60.110.10 1 251 4.8E-59 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PAJ_RS01060 2f36a2239846a0e181dbccf561927ae3 257 PANTHER PTHR23088:SF28 1 251 1.7E-133 T 14-09-2016 PAJ_RS01060 2f36a2239846a0e181dbccf561927ae3 257 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 137 157 - T 14-09-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site PAJ_RS01060 2f36a2239846a0e181dbccf561927ae3 257 PANTHER PTHR23088 1 251 1.7E-133 T 14-09-2016 PAJ_RS01060 2f36a2239846a0e181dbccf561927ae3 257 Pfam PF00795 Carbon-nitrogen hydrolase 10 241 1.1E-30 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PAJ_RS01060 2f36a2239846a0e181dbccf561927ae3 257 SUPERFAMILY SSF56317 1 249 1.7E-58 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PAJ_RS14805 6d54e655c50b99b2f9fd143e326e6db9 285 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 281 2.7E-91 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS14805 6d54e655c50b99b2f9fd143e326e6db9 285 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 69 82 - T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS14805 6d54e655c50b99b2f9fd143e326e6db9 285 PIRSF PIRSF001359 1 282 3.8E-91 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS14805 6d54e655c50b99b2f9fd143e326e6db9 285 Gene3D G3DSA:3.20.20.70 1 282 7.4E-102 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS14805 6d54e655c50b99b2f9fd143e326e6db9 285 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 282 1.4E-79 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS14805 6d54e655c50b99b2f9fd143e326e6db9 285 SUPERFAMILY SSF51569 4 282 1.2E-88 T 14-09-2016 PAJ_RS14805 6d54e655c50b99b2f9fd143e326e6db9 285 PANTHER PTHR30304 2 282 6.4E-82 T 14-09-2016 PAJ_RS12450 fa8448eca435374af524bddda99788b5 350 Gene3D G3DSA:1.10.3720.10 103 178 2.5E-25 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12450 fa8448eca435374af524bddda99788b5 350 Gene3D G3DSA:1.10.3720.10 217 342 2.5E-25 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12450 fa8448eca435374af524bddda99788b5 350 SUPERFAMILY SSF161098 105 175 1.3E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12450 fa8448eca435374af524bddda99788b5 350 SUPERFAMILY SSF161098 214 333 1.3E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS12450 fa8448eca435374af524bddda99788b5 350 PANTHER PTHR30465 3 184 2.8E-129 T 14-09-2016 PAJ_RS12450 fa8448eca435374af524bddda99788b5 350 PANTHER PTHR30465 208 350 2.8E-129 T 14-09-2016 PAJ_RS12450 fa8448eca435374af524bddda99788b5 350 PANTHER PTHR30465:SF77 208 350 2.8E-129 T 14-09-2016 PAJ_RS12450 fa8448eca435374af524bddda99788b5 350 PANTHER PTHR30465:SF77 3 184 2.8E-129 T 14-09-2016 PAJ_RS12450 fa8448eca435374af524bddda99788b5 350 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 129 350 4.3E-41 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS08165 4be2c01f1e8c1c78f4723b032cb937a5 233 Gene3D G3DSA:1.10.1710.10 4 118 1.0E-35 T 14-09-2016 IPR016103 ProQ/FinO domain PAJ_RS08165 4be2c01f1e8c1c78f4723b032cb937a5 233 Pfam PF04352 ProQ/FINO family 8 115 9.1E-42 T 14-09-2016 IPR016103 ProQ/FinO domain PAJ_RS08165 4be2c01f1e8c1c78f4723b032cb937a5 233 SMART SM00945 5 119 6.6E-58 T 14-09-2016 IPR016103 ProQ/FinO domain PAJ_RS08165 4be2c01f1e8c1c78f4723b032cb937a5 233 PANTHER PTHR38106 1 233 2.3E-82 T 14-09-2016 PAJ_RS08165 4be2c01f1e8c1c78f4723b032cb937a5 233 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 233 29.483 T 14-09-2016 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 PAJ_RS08165 4be2c01f1e8c1c78f4723b032cb937a5 233 SUPERFAMILY SSF48657 5 118 3.4E-39 T 14-09-2016 IPR016103 ProQ/FinO domain PAJ_RS08165 4be2c01f1e8c1c78f4723b032cb937a5 233 PANTHER PTHR38106:SF1 1 233 2.3E-82 T 14-09-2016 PAJ_RS03285 236c80326fffa87c8b0f05a6b7181c4d 303 SUPERFAMILY SSF103481 186 282 1.44E-8 T 14-09-2016 PAJ_RS03285 236c80326fffa87c8b0f05a6b7181c4d 303 PANTHER PTHR22911:SF37 11 300 6.1E-96 T 14-09-2016 PAJ_RS03285 236c80326fffa87c8b0f05a6b7181c4d 303 Pfam PF00892 EamA-like transporter family 150 279 1.0E-14 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS03285 236c80326fffa87c8b0f05a6b7181c4d 303 PANTHER PTHR22911 11 300 6.1E-96 T 14-09-2016 PAJ_RS08605 18ea7fb8141a673413b6cf6419900827 390 PANTHER PTHR30011:SF1 9 386 5.8E-184 T 14-09-2016 PAJ_RS08605 18ea7fb8141a673413b6cf6419900827 390 SUPERFAMILY SSF51679 9 355 1.7E-95 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS08605 18ea7fb8141a673413b6cf6419900827 390 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 10 387 67.992 T 14-09-2016 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 PAJ_RS08605 18ea7fb8141a673413b6cf6419900827 390 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 10 355 4.2E-183 T 14-09-2016 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 PAJ_RS08605 18ea7fb8141a673413b6cf6419900827 390 Gene3D G3DSA:3.20.20.30 5 355 2.4E-103 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS08605 18ea7fb8141a673413b6cf6419900827 390 PANTHER PTHR30011 9 386 5.8E-184 T 14-09-2016 PAJ_RS08605 18ea7fb8141a673413b6cf6419900827 390 Pfam PF00296 Luciferase-like monooxygenase 10 331 1.8E-88 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PAJ_RS09170 9eb1f5797fce3d4c8c5ebed2e14b4637 201 Pfam PF12059 Protein of unknown function (DUF3540) 22 201 4.8E-64 T 14-09-2016 IPR021927 Protein of unknown function DUF3540 PAJ_RS00830 2006bb0056b9f4f0910469d93a14e684 217 Gene3D G3DSA:1.10.3720.10 9 214 9.5E-43 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00830 2006bb0056b9f4f0910469d93a14e684 217 PANTHER PTHR30450:SF1 1 217 4.7E-122 T 14-09-2016 PAJ_RS00830 2006bb0056b9f4f0910469d93a14e684 217 PANTHER PTHR30450 1 217 4.7E-122 T 14-09-2016 PAJ_RS00830 2006bb0056b9f4f0910469d93a14e684 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 215 2.5E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS00830 2006bb0056b9f4f0910469d93a14e684 217 SUPERFAMILY SSF161098 9 201 6.41E-48 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS18000 469417f3a98a9ea10fa1879188ed62ca 437 PANTHER PTHR11119 4 423 6.4E-178 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS18000 469417f3a98a9ea10fa1879188ed62ca 437 Pfam PF00860 Permease family 23 396 2.9E-42 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS18000 469417f3a98a9ea10fa1879188ed62ca 437 PIRSF PIRSF005353 1 436 3.6E-173 T 14-09-2016 IPR026033 Purine permease PbuG-like PAJ_RS18000 469417f3a98a9ea10fa1879188ed62ca 437 PANTHER PTHR11119:SF9 4 423 6.4E-178 T 14-09-2016 IPR029940 AzgA purine transporter GO:0005345|GO:0006863 PAJ_RS18925 785a06b110041a18f6135ce64d9b3e1b 70 Gene3D G3DSA:1.10.1470.10 1 67 5.6E-32 T 14-09-2016 IPR008462 CsbD-like PAJ_RS18925 785a06b110041a18f6135ce64d9b3e1b 70 PIRSF PIRSF039008 1 66 3.1E-32 T 14-09-2016 IPR026042 Stress response protein YjbJ PAJ_RS18925 785a06b110041a18f6135ce64d9b3e1b 70 Pfam PF05532 CsbD-like 4 56 1.3E-22 T 14-09-2016 IPR008462 CsbD-like PAJ_RS18925 785a06b110041a18f6135ce64d9b3e1b 70 SUPERFAMILY SSF69047 1 66 1.23E-26 T 14-09-2016 IPR008462 CsbD-like PAJ_RS18925 785a06b110041a18f6135ce64d9b3e1b 70 PANTHER PTHR34977 1 63 6.3E-17 T 14-09-2016 PAJ_RS08085 3744d8dde8b5a9e1ce058c1c382efd80 454 Pfam PF03315 Serine dehydratase beta chain 3 155 2.3E-55 T 14-09-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 PAJ_RS08085 3744d8dde8b5a9e1ce058c1c382efd80 454 Pfam PF03313 Serine dehydratase alpha chain 184 448 1.6E-97 T 14-09-2016 IPR005130 Serine dehydratase-like, alpha subunit PAJ_RS08085 3744d8dde8b5a9e1ce058c1c382efd80 454 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 2.0E-224 T 14-09-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 PAJ_RS08085 3744d8dde8b5a9e1ce058c1c382efd80 454 Gene3D G3DSA:3.30.1330.90 10 158 4.5E-52 T 14-09-2016 IPR029009 Allosteric substrate binding domain PAJ_RS08085 3744d8dde8b5a9e1ce058c1c382efd80 454 SUPERFAMILY SSF143548 16 158 4.18E-44 T 14-09-2016 IPR029009 Allosteric substrate binding domain PAJ_RS08085 3744d8dde8b5a9e1ce058c1c382efd80 454 PANTHER PTHR30182:SF4 1 454 0.0 T 14-09-2016 PAJ_RS08085 3744d8dde8b5a9e1ce058c1c382efd80 454 PANTHER PTHR30182 1 454 0.0 T 14-09-2016 PAJ_RS09550 33b27db5e69500adb8c7c587b71d5123 307 PANTHER PTHR32196 19 295 6.1E-51 T 14-09-2016 PAJ_RS09550 33b27db5e69500adb8c7c587b71d5123 307 Gene3D G3DSA:3.40.50.2300 20 144 7.2E-32 T 14-09-2016 PAJ_RS09550 33b27db5e69500adb8c7c587b71d5123 307 SUPERFAMILY SSF53822 23 301 1.43E-83 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS09550 33b27db5e69500adb8c7c587b71d5123 307 PANTHER PTHR32196:SF9 19 295 6.1E-51 T 14-09-2016 PAJ_RS09550 33b27db5e69500adb8c7c587b71d5123 307 Gene3D G3DSA:3.40.50.2300 145 301 1.6E-55 T 14-09-2016 PAJ_RS09550 33b27db5e69500adb8c7c587b71d5123 307 Pfam PF13407 Periplasmic binding protein domain 27 281 3.6E-62 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PANTHER PTHR34501 3 359 3.3E-164 T 14-09-2016 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 Pfam PF00267 Gram-negative porin 28 359 3.3E-119 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 98 120 1.0E-56 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 1.0E-56 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 152 174 1.0E-56 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 270 289 1.0E-56 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 1.0E-56 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00183 E.coli/Salmonella-type porin signature 242 259 1.0E-56 T 14-09-2016 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 SUPERFAMILY SSF56935 23 359 2.54E-73 T 14-09-2016 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 Gene3D G3DSA:2.40.160.10 23 359 1.1E-92 T 14-09-2016 IPR023614 Porin domain PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PANTHER PTHR34501:SF3 3 359 3.3E-164 T 14-09-2016 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 154 165 9.8E-13 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 314 331 9.8E-13 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 9.8E-13 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 236 248 9.8E-13 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS05655 135c021db1071cd9a42df0cd5e9a0ca9 359 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 98 108 9.8E-13 T 14-09-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 PAJ_RS03030 deebd8ad15a1a57e8159d6764d4a405c 253 PANTHER PTHR15822 1 251 4.3E-97 T 14-09-2016 PAJ_RS03030 deebd8ad15a1a57e8159d6764d4a405c 253 Gene3D G3DSA:3.60.10.10 5 251 4.2E-18 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS03030 deebd8ad15a1a57e8159d6764d4a405c 253 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 13 244 6.7E-22 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS03030 deebd8ad15a1a57e8159d6764d4a405c 253 SUPERFAMILY SSF56219 8 251 1.83E-50 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS03030 deebd8ad15a1a57e8159d6764d4a405c 253 PANTHER PTHR15822:SF7 1 251 4.3E-97 T 14-09-2016 PAJ_RS11380 87bd4db973c3ed5c3308361942ff8173 153 Pfam PF11143 Protein of unknown function (DUF2919) 8 146 4.5E-47 T 14-09-2016 IPR021318 Protein of unknown function DUF2919 PAJ_RS12160 797a866709ac345a33d10eedc459129c 98 Gene3D G3DSA:3.10.450.40 4 94 5.5E-17 T 14-09-2016 PAJ_RS12160 797a866709ac345a33d10eedc459129c 98 Pfam PF11523 Protein of unknown function (DUF3223) 23 89 3.9E-8 T 14-09-2016 IPR021602 Protein of unknown function DUF3223 PAJ_RS09435 6e70b85f52e93d9630d742876d2d67cc 149 Pfam PF06754 Phosphonate metabolism protein PhnG 6 146 6.4E-54 T 14-09-2016 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 PAJ_RS09435 6e70b85f52e93d9630d742876d2d67cc 149 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 5 147 6.4E-52 T 14-09-2016 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 PAJ_RS06635 842fcc9f3b881b01e2bc24247a039ef9 433 PANTHER PTHR19328:SF26 43 99 9.6E-158 T 14-09-2016 PAJ_RS06635 842fcc9f3b881b01e2bc24247a039ef9 433 Gene3D G3DSA:2.120.10.30 63 431 5.3E-54 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like PAJ_RS06635 842fcc9f3b881b01e2bc24247a039ef9 433 PANTHER PTHR19328 43 99 9.6E-158 T 14-09-2016 PAJ_RS06635 842fcc9f3b881b01e2bc24247a039ef9 433 PANTHER PTHR19328:SF26 128 432 9.6E-158 T 14-09-2016 PAJ_RS06635 842fcc9f3b881b01e2bc24247a039ef9 433 Pfam PF07995 Glucose / Sorbosone dehydrogenase 78 357 1.5E-16 T 14-09-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 PAJ_RS06635 842fcc9f3b881b01e2bc24247a039ef9 433 SUPERFAMILY SSF50952 124 431 4.71E-35 T 14-09-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 PAJ_RS06635 842fcc9f3b881b01e2bc24247a039ef9 433 SUPERFAMILY SSF50952 63 96 4.71E-35 T 14-09-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 PAJ_RS06635 842fcc9f3b881b01e2bc24247a039ef9 433 PANTHER PTHR19328 128 432 9.6E-158 T 14-09-2016 PAJ_RS01145 71df81295638d04349c138199798c460 330 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 3 320 1.6E-86 T 14-09-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin PAJ_RS01145 71df81295638d04349c138199798c460 330 Gene3D G3DSA:3.30.1780.10 1 141 1.4E-39 T 14-09-2016 IPR023401 Ornithine cyclodeaminase, N-terminal PAJ_RS01145 71df81295638d04349c138199798c460 330 Gene3D G3DSA:3.40.50.720 142 301 3.4E-57 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS01145 71df81295638d04349c138199798c460 330 PANTHER PTHR13812:SF19 4 330 3.9E-79 T 14-09-2016 PAJ_RS01145 71df81295638d04349c138199798c460 330 PANTHER PTHR13812 4 330 3.9E-79 T 14-09-2016 PAJ_RS01145 71df81295638d04349c138199798c460 330 PIRSF PIRSF001439 1 329 1.6E-82 T 14-09-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin PAJ_RS01145 71df81295638d04349c138199798c460 330 SUPERFAMILY SSF51735 1 329 1.4E-89 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS18550 3cde73037f6067a3d484150cdd5f8ef9 162 PANTHER PTHR30265:SF3 1 158 3.1E-31 T 14-09-2016 PAJ_RS18550 3cde73037f6067a3d484150cdd5f8ef9 162 SMART SM00738 1 100 1.3E-30 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 PAJ_RS18550 3cde73037f6067a3d484150cdd5f8ef9 162 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 162 45.511 T 14-09-2016 IPR010215 Transcription antitermination protein RfaH GO:0006355 PAJ_RS18550 3cde73037f6067a3d484150cdd5f8ef9 162 Pfam PF02357 Transcription termination factor nusG 3 95 1.4E-19 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 PAJ_RS18550 3cde73037f6067a3d484150cdd5f8ef9 162 PANTHER PTHR30265 1 158 3.1E-31 T 14-09-2016 PAJ_RS18550 3cde73037f6067a3d484150cdd5f8ef9 162 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 159 2.4E-61 T 14-09-2016 IPR010215 Transcription antitermination protein RfaH GO:0006355 PAJ_RS18550 3cde73037f6067a3d484150cdd5f8ef9 162 SUPERFAMILY SSF82679 2 98 1.26E-27 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 PAJ_RS18550 3cde73037f6067a3d484150cdd5f8ef9 162 Gene3D G3DSA:3.30.70.940 2 98 3.6E-17 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 PAJ_RS15485 fd6519b19bf96bb2b65248b132e1ad2b 322 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 10 320 2.4E-66 T 14-09-2016 IPR010106 Conserved hypothetical protein CHP01784 PAJ_RS15485 fd6519b19bf96bb2b65248b132e1ad2b 322 Pfam PF04754 Putative transposase, YhgA-like 9 208 2.1E-82 T 14-09-2016 IPR006842 Transposase (putative), YhgA-like PAJ_RS15485 fd6519b19bf96bb2b65248b132e1ad2b 322 PANTHER PTHR34611 3 322 1.1E-181 T 14-09-2016 PAJ_RS15485 fd6519b19bf96bb2b65248b132e1ad2b 322 PANTHER PTHR34611:SF3 3 322 1.1E-181 T 14-09-2016 PAJ_RS11405 0f68a49169254b2d6c23142f33525340 316 Pfam PF00923 Transaldolase 13 310 3.5E-100 T 14-09-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS11405 0f68a49169254b2d6c23142f33525340 316 PANTHER PTHR10683 1 316 9.5E-203 T 14-09-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS11405 0f68a49169254b2d6c23142f33525340 316 ProSitePatterns PS01054 Transaldolase signature 1. 30 38 - T 14-09-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS11405 0f68a49169254b2d6c23142f33525340 316 ProSitePatterns PS00958 Transaldolase active site. 128 145 - T 14-09-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS11405 0f68a49169254b2d6c23142f33525340 316 SUPERFAMILY SSF51569 1 314 2.62E-113 T 14-09-2016 PAJ_RS11405 0f68a49169254b2d6c23142f33525340 316 PANTHER PTHR10683:SF16 1 316 9.5E-203 T 14-09-2016 PAJ_RS11405 0f68a49169254b2d6c23142f33525340 316 Gene3D G3DSA:3.20.20.70 1 315 4.1E-131 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS11405 0f68a49169254b2d6c23142f33525340 316 TIGRFAM TIGR00874 talAB: transaldolase 2 315 5.3E-156 T 14-09-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS11405 0f68a49169254b2d6c23142f33525340 316 Hamap MF_00492 Transaldolase [tal]. 1 316 52.1 T 14-09-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PAJ_RS13100 800426adf5b99ce796c07c7d0437c1c0 149 Gene3D G3DSA:3.90.1010.10 5 147 1.7E-47 T 14-09-2016 PAJ_RS13100 800426adf5b99ce796c07c7d0437c1c0 149 Pfam PF02657 Fe-S metabolism associated domain 23 142 1.1E-37 T 14-09-2016 IPR003808 Fe-S metabolism associated domain, SufE-like UniPathway: UPA00266 PAJ_RS13100 800426adf5b99ce796c07c7d0437c1c0 149 PANTHER PTHR12735 1 149 3.3E-51 T 14-09-2016 PAJ_RS13100 800426adf5b99ce796c07c7d0437c1c0 149 SUPERFAMILY SSF82649 4 146 6.28E-43 T 14-09-2016 PAJ_RS13100 800426adf5b99ce796c07c7d0437c1c0 149 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 7 143 9.2E-69 T 14-09-2016 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE PAJ_RS13100 800426adf5b99ce796c07c7d0437c1c0 149 PANTHER PTHR12735:SF11 1 149 3.3E-51 T 14-09-2016 PAJ_RS07810 0e3e8133b8e9b131d7aea8c378c7dd84 215 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 8 206 3.2E-76 T 14-09-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PAJ_RS07810 0e3e8133b8e9b131d7aea8c378c7dd84 215 Pfam PF01914 MarC family integral membrane protein 10 210 2.5E-71 T 14-09-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PAJ_RS07810 0e3e8133b8e9b131d7aea8c378c7dd84 215 PANTHER PTHR33508:SF1 4 215 1.9E-99 T 14-09-2016 PAJ_RS07810 0e3e8133b8e9b131d7aea8c378c7dd84 215 PANTHER PTHR33508 4 215 1.9E-99 T 14-09-2016 PAJ_RS07960 9077a3fb2587cbbf10438f0b9a5ad9a3 424 Pfam PF04285 Protein of unknown function (DUF444) 4 420 1.0E-185 T 14-09-2016 IPR006698 Uncharacterised protein family UPF0229 PAJ_RS07960 9077a3fb2587cbbf10438f0b9a5ad9a3 424 PANTHER PTHR30510 1 424 1.5E-193 T 14-09-2016 PAJ_RS07960 9077a3fb2587cbbf10438f0b9a5ad9a3 424 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 422 41.82 T 14-09-2016 IPR006698 Uncharacterised protein family UPF0229 PAJ_RS11875 78db9e636ac08eae3dab69d301b06210 243 Gene3D G3DSA:1.25.40.10 28 108 5.9E-12 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS11875 78db9e636ac08eae3dab69d301b06210 243 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 8 230 3.0E-50 T 14-09-2016 IPR013360 Pilus biogenesis/stability type IV, PilW PAJ_RS11875 78db9e636ac08eae3dab69d301b06210 243 SUPERFAMILY SSF48452 28 162 7.37E-15 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS11875 78db9e636ac08eae3dab69d301b06210 243 Gene3D G3DSA:1.25.40.10 109 165 2.4E-4 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PAJ_RS09905 92cd5edd661ffc81c7def7444a888002 298 Pfam PF00483 Nucleotidyl transferase 5 270 1.5E-23 T 14-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 PAJ_RS09905 92cd5edd661ffc81c7def7444a888002 298 PANTHER PTHR22572 5 281 4.2E-181 T 14-09-2016 PAJ_RS09905 92cd5edd661ffc81c7def7444a888002 298 SUPERFAMILY SSF53448 1 285 2.25E-57 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS09905 92cd5edd661ffc81c7def7444a888002 298 PANTHER PTHR22572:SF118 5 281 4.2E-181 T 14-09-2016 PAJ_RS09905 92cd5edd661ffc81c7def7444a888002 298 Gene3D G3DSA:3.90.550.10 3 279 5.0E-63 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 Gene3D G3DSA:3.30.420.40 374 432 1.4E-14 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 Gene3D G3DSA:3.30.420.40 218 241 1.4E-14 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 SUPERFAMILY SSF53067 85 204 6.8E-26 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 SUPERFAMILY SSF53067 1 44 6.8E-26 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 PANTHER PTHR19375 331 442 4.0E-127 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 PANTHER PTHR19375 2 44 4.0E-127 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 Pfam PF00012 Hsp70 protein 331 447 9.1E-5 T 14-09-2016 IPR013126 Heat shock protein 70 family PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 Pfam PF00012 Hsp70 protein 3 227 2.3E-13 T 14-09-2016 IPR013126 Heat shock protein 70 family PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 PANTHER PTHR19375 85 269 4.0E-127 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 14-09-2016 IPR018181 Heat shock protein 70, conserved site PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 PANTHER PTHR19375:SF182 331 442 4.0E-127 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 PANTHER PTHR19375:SF182 85 269 4.0E-127 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 Gene3D G3DSA:3.30.420.40 133 217 2.9E-29 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 Gene3D G3DSA:3.30.420.40 2 63 2.9E-29 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 PANTHER PTHR19375:SF182 2 44 4.0E-127 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 SUPERFAMILY SSF53067 208 276 7.21E-29 T 14-09-2016 PAJ_RS10005 d0924fceda0aa3c83f3c6fc3fcb612af 450 SUPERFAMILY SSF53067 328 447 7.21E-29 T 14-09-2016 PAJ_RS10760 c0f7c23a855612e202db53b1a800601f 228 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 114 1.4E-19 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS10760 c0f7c23a855612e202db53b1a800601f 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 220 9.5E-24 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10760 c0f7c23a855612e202db53b1a800601f 228 PANTHER PTHR30133 1 228 8.9E-172 T 14-09-2016 PAJ_RS10760 c0f7c23a855612e202db53b1a800601f 228 PANTHER PTHR30133:SF1 1 228 8.9E-172 T 14-09-2016 IPR030199 Histidine transport system permease protein HisQ GO:0003333|GO:0016021 PAJ_RS10760 c0f7c23a855612e202db53b1a800601f 228 Gene3D G3DSA:1.10.3720.10 7 219 4.8E-41 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10760 c0f7c23a855612e202db53b1a800601f 228 SUPERFAMILY SSF161098 7 205 2.49E-39 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS19870 b0b4a6df05363ba431d672a551480624 277 PANTHER PTHR20941 15 277 5.9E-129 T 14-09-2016 PAJ_RS19870 b0b4a6df05363ba431d672a551480624 277 Gene3D G3DSA:3.20.20.20 13 274 3.4E-110 T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 PAJ_RS19870 b0b4a6df05363ba431d672a551480624 277 SUPERFAMILY SSF51717 9 274 3.53E-104 T 14-09-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 PAJ_RS19870 b0b4a6df05363ba431d672a551480624 277 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 PAJ_RS19870 b0b4a6df05363ba431d672a551480624 277 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 PAJ_RS19870 b0b4a6df05363ba431d672a551480624 277 PANTHER PTHR20941:SF1 15 277 5.9E-129 T 14-09-2016 PAJ_RS19870 b0b4a6df05363ba431d672a551480624 277 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 17 271 5.4E-102 T 14-09-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 PAJ_RS19870 b0b4a6df05363ba431d672a551480624 277 Pfam PF00809 Pterin binding enzyme 18 257 2.9E-89 T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 PAJ_RS18425 72a3fc080614a668dca01d29c7ff34b6 299 SUPERFAMILY SSF103481 42 146 4.71E-13 T 14-09-2016 PAJ_RS18425 72a3fc080614a668dca01d29c7ff34b6 299 SUPERFAMILY SSF103481 185 285 6.41E-9 T 14-09-2016 PAJ_RS18425 72a3fc080614a668dca01d29c7ff34b6 299 PANTHER PTHR22911:SF41 1 298 9.0E-148 T 14-09-2016 PAJ_RS18425 72a3fc080614a668dca01d29c7ff34b6 299 TIGRFAM TIGR00688 rarD: protein RarD 10 261 3.1E-95 T 14-09-2016 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 PAJ_RS18425 72a3fc080614a668dca01d29c7ff34b6 299 Pfam PF00892 EamA-like transporter family 9 142 1.7E-14 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS18425 72a3fc080614a668dca01d29c7ff34b6 299 Pfam PF00892 EamA-like transporter family 153 284 1.4E-7 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS18425 72a3fc080614a668dca01d29c7ff34b6 299 PANTHER PTHR22911 1 298 9.0E-148 T 14-09-2016 PAJ_RS01245 7401041016c9bc8e92db8180fe7b7163 365 SUPERFAMILY SSF56796 2 356 1.18E-89 T 14-09-2016 PAJ_RS01245 7401041016c9bc8e92db8180fe7b7163 365 PANTHER PTHR11496 1 361 2.7E-170 T 14-09-2016 PAJ_RS01245 7401041016c9bc8e92db8180fe7b7163 365 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 150 178 - T 14-09-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 PAJ_RS01245 7401041016c9bc8e92db8180fe7b7163 365 PANTHER PTHR11496:SF57 1 361 2.7E-170 T 14-09-2016 PAJ_RS01245 7401041016c9bc8e92db8180fe7b7163 365 Gene3D G3DSA:1.20.1090.10 160 363 2.8E-69 T 14-09-2016 PAJ_RS01245 7401041016c9bc8e92db8180fe7b7163 365 Gene3D G3DSA:3.40.50.1970 2 158 4.8E-44 T 14-09-2016 PAJ_RS01245 7401041016c9bc8e92db8180fe7b7163 365 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 348 1.5E-69 T 14-09-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 PAJ_RS01245 7401041016c9bc8e92db8180fe7b7163 365 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 241 261 - T 14-09-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 PAJ_RS01245 7401041016c9bc8e92db8180fe7b7163 365 PIRSF PIRSF000112 1 360 2.2E-91 T 14-09-2016 PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 PANTHER PTHR10314 25 36 1.1E-136 T 14-09-2016 PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 PANTHER PTHR10314:SF1 25 36 1.1E-136 T 14-09-2016 PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 PANTHER PTHR10314 53 427 1.1E-136 T 14-09-2016 PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 PANTHER PTHR10314:SF1 53 427 1.1E-136 T 14-09-2016 PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 Gene3D G3DSA:3.40.50.1100 106 195 3.0E-12 T 14-09-2016 PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 Gene3D G3DSA:3.90.1380.10 1 84 4.3E-20 T 14-09-2016 IPR029144 Threonine synthase, N-terminal PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 95 370 6.5E-22 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 Gene3D G3DSA:3.40.50.1100 196 321 6.5E-52 T 14-09-2016 PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 Gene3D G3DSA:3.40.50.1100 326 402 1.6E-13 T 14-09-2016 PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 97 111 - T 14-09-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 TIGRFAM TIGR00260 thrC: threonine synthase 52 397 2.9E-117 T 14-09-2016 IPR004450 Threonine synthase-like PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 SUPERFAMILY SSF53686 1 426 1.57E-132 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS00015 1cb30f13be163e158e228b98c39f2168 427 Pfam PF14821 Threonine synthase N terminus 8 80 2.0E-11 T 14-09-2016 IPR029144 Threonine synthase, N-terminal PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 SUPERFAMILY SSF51011 405 491 4.1E-29 T 14-09-2016 PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 SUPERFAMILY SSF51445 6 402 9.06E-92 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 PANTHER PTHR10357 6 110 1.1E-146 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 PANTHER PTHR10357:SF156 160 491 1.1E-146 T 14-09-2016 PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 SMART SM00642 4 402 2.6E-50 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 Gene3D G3DSA:2.60.40.1180 408 491 1.6E-32 T 14-09-2016 IPR013780 Glycosyl hydrolase, all-beta PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 PIRSF PIRSF001021 1 493 2.4E-200 T 14-09-2016 IPR013776 Alpha-amylase, thermostable GO:0004553|GO:0005509|GO:0005975 KEGG: 00500+3.2.1.1 PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 Pfam PF00128 Alpha amylase, catalytic domain 24 368 2.6E-21 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 Gene3D G3DSA:3.20.20.80 2 403 1.9E-67 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 PANTHER PTHR10357 160 491 1.1E-146 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PAJ_RS08835 4c6a94db20c2e29fa61603112e42980d 493 PANTHER PTHR10357:SF156 6 110 1.1E-146 T 14-09-2016 PAJ_RS16785 06aa3de4190f05ab7400d934050b61c5 195 PANTHER PTHR30086:SF12 5 195 1.3E-36 T 14-09-2016 PAJ_RS16785 06aa3de4190f05ab7400d934050b61c5 195 Pfam PF01810 LysE type translocator 12 185 2.4E-10 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS16785 06aa3de4190f05ab7400d934050b61c5 195 PANTHER PTHR30086 5 195 1.3E-36 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS19350 38ee4ba5ba94ce9413bc4929b0f47cc3 169 SUPERFAMILY SSF50814 4 168 8.03E-73 T 14-09-2016 IPR011038 Calycin-like PAJ_RS19350 38ee4ba5ba94ce9413bc4929b0f47cc3 169 PANTHER PTHR40087:SF1 4 168 5.5E-74 T 14-09-2016 PAJ_RS19350 38ee4ba5ba94ce9413bc4929b0f47cc3 169 Gene3D G3DSA:2.40.128.20 9 168 3.4E-76 T 14-09-2016 IPR012674 Calycin PAJ_RS19350 38ee4ba5ba94ce9413bc4929b0f47cc3 169 PANTHER PTHR40087 4 168 5.5E-74 T 14-09-2016 PAJ_RS19350 38ee4ba5ba94ce9413bc4929b0f47cc3 169 Pfam PF05870 Phenolic acid decarboxylase (PAD) 9 165 1.7E-85 T 14-09-2016 IPR008729 Phenolic acid decarboxylase, bacterial GO:0016831 KEGG: 00053+4.1.1.-|KEGG: 00230+4.1.1.-|KEGG: 00261+4.1.1.-|KEGG: 00350+4.1.1.-|KEGG: 00351+4.1.1.-|KEGG: 00360+4.1.1.-|KEGG: 00362+4.1.1.-|KEGG: 00380+4.1.1.-|KEGG: 00620+4.1.1.-|KEGG: 00621+4.1.1.-|KEGG: 00622+4.1.1.-|KEGG: 00624+4.1.1.-|KEGG: 00625+4.1.1.-|KEGG: 00626+4.1.1.-|KEGG: 00940+4.1.1.- PAJ_RS19350 38ee4ba5ba94ce9413bc4929b0f47cc3 169 ProDom PD022010 DECARBOXYLASE ACID PHENOLIC P-COUMARIC LYASE 4.1.1.- PAD PADC FERULATE PROBABLE 9 152 2.0E-65 T 14-09-2016 IPR008729 Phenolic acid decarboxylase, bacterial GO:0016831 KEGG: 00053+4.1.1.-|KEGG: 00230+4.1.1.-|KEGG: 00261+4.1.1.-|KEGG: 00350+4.1.1.-|KEGG: 00351+4.1.1.-|KEGG: 00360+4.1.1.-|KEGG: 00362+4.1.1.-|KEGG: 00380+4.1.1.-|KEGG: 00620+4.1.1.-|KEGG: 00621+4.1.1.-|KEGG: 00622+4.1.1.-|KEGG: 00624+4.1.1.-|KEGG: 00625+4.1.1.-|KEGG: 00626+4.1.1.-|KEGG: 00940+4.1.1.- PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 PANTHER PTHR24220:SF303 15 388 1.3E-288 T 14-09-2016 PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 SMART SM00382 288 483 0.87 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 SMART SM00382 38 233 1.7E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 SUPERFAMILY SSF52540 253 490 4.65E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 Pfam PF00005 ABC transporter 280 434 1.7E-16 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 Pfam PF00005 ABC transporter 29 178 2.6E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 PANTHER PTHR24220 15 388 1.3E-288 T 14-09-2016 PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 Gene3D G3DSA:3.40.50.300 262 498 7.4E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 Gene3D G3DSA:3.40.50.300 11 237 3.4E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10150 590e3237c4d916de4f5e8d45d111276c 506 SUPERFAMILY SSF52540 12 235 2.24E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05935 3afa121faea4c4f9fe3762b9fa88d613 400 SUPERFAMILY SSF103473 8 376 1.23E-54 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS05935 3afa121faea4c4f9fe3762b9fa88d613 400 PANTHER PTHR23502:SF28 7 399 9.7E-178 T 14-09-2016 PAJ_RS05935 3afa121faea4c4f9fe3762b9fa88d613 400 PANTHER PTHR23502 7 399 9.7E-178 T 14-09-2016 PAJ_RS05935 3afa121faea4c4f9fe3762b9fa88d613 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 5 380 8.2E-106 T 14-09-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 PAJ_RS05935 3afa121faea4c4f9fe3762b9fa88d613 400 Pfam PF07690 Major Facilitator Superfamily 12 340 7.4E-38 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS05935 3afa121faea4c4f9fe3762b9fa88d613 400 Gene3D G3DSA:1.20.1250.20 200 376 1.4E-8 T 14-09-2016 PAJ_RS05935 3afa121faea4c4f9fe3762b9fa88d613 400 Gene3D G3DSA:1.20.1250.20 10 192 1.3E-29 T 14-09-2016 PAJ_RS00630 aaad22756008da87bb81b1ff7f4e710a 115 SUPERFAMILY SSF89360 9 104 2.88E-31 T 14-09-2016 IPR000361 FeS cluster biogenesis PAJ_RS00630 aaad22756008da87bb81b1ff7f4e710a 115 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 10 114 3.4E-39 T 14-09-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 PAJ_RS00630 aaad22756008da87bb81b1ff7f4e710a 115 PANTHER PTHR10072 1 115 1.2E-49 T 14-09-2016 PAJ_RS00630 aaad22756008da87bb81b1ff7f4e710a 115 Gene3D G3DSA:2.60.300.12 10 104 5.6E-32 T 14-09-2016 IPR000361 FeS cluster biogenesis PAJ_RS00630 aaad22756008da87bb81b1ff7f4e710a 115 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 115 36.818 T 14-09-2016 IPR023063 FeS cluster insertion protein ErpA GO:0016226 PAJ_RS00630 aaad22756008da87bb81b1ff7f4e710a 115 Pfam PF01521 Iron-sulphur cluster biosynthesis 10 110 5.3E-21 T 14-09-2016 IPR000361 FeS cluster biogenesis PAJ_RS00630 aaad22756008da87bb81b1ff7f4e710a 115 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 96 113 - T 14-09-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site PAJ_RS02295 5249dc113c3d4d29cfeb686efb526789 232 PANTHER PTHR10108 2 201 9.9E-23 T 14-09-2016 PAJ_RS02295 5249dc113c3d4d29cfeb686efb526789 232 Pfam PF08241 Methyltransferase domain 51 150 9.2E-19 T 14-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 PAJ_RS02295 5249dc113c3d4d29cfeb686efb526789 232 Gene3D G3DSA:3.40.50.150 33 202 2.9E-29 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS02295 5249dc113c3d4d29cfeb686efb526789 232 SUPERFAMILY SSF53335 40 203 1.52E-31 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS18110 2e0a70a7eae5a2d21ea3b41349ef6ab7 197 SUPERFAMILY SSF109604 5 152 2.13E-36 T 14-09-2016 PAJ_RS18110 2e0a70a7eae5a2d21ea3b41349ef6ab7 197 Pfam PF13328 HD domain 9 133 3.0E-20 T 14-09-2016 IPR003607 HD/PDEase domain PAJ_RS18110 2e0a70a7eae5a2d21ea3b41349ef6ab7 197 SMART SM00471 27 136 1.5E-8 T 14-09-2016 IPR003607 HD/PDEase domain PAJ_RS18110 2e0a70a7eae5a2d21ea3b41349ef6ab7 197 PANTHER PTHR21262 8 136 6.4E-25 T 14-09-2016 PAJ_RS13375 77a61d4facc55b8cbcd73aa661874e54 242 Pfam PF04402 Protein of unknown function (DUF541) 34 234 1.2E-44 T 14-09-2016 IPR007497 Protein of unknown function DUF541 PAJ_RS13375 77a61d4facc55b8cbcd73aa661874e54 242 PANTHER PTHR34387:SF1 5 242 1.5E-63 T 14-09-2016 PAJ_RS13375 77a61d4facc55b8cbcd73aa661874e54 242 PANTHER PTHR34387 5 242 1.5E-63 T 14-09-2016 PAJ_RS15150 9786819f930aea44d07d5aa3ef0f7554 114 SUPERFAMILY SSF63520 38 112 3.27E-7 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS15150 9786819f930aea44d07d5aa3ef0f7554 114 TIGRFAM TIGR03582 EF_0829: PRD domain protein, EF_0829/AHA_3910 family 13 113 7.6E-40 T 14-09-2016 IPR020044 PRD domain protein, EF0829/AHA3910 PAJ_RS15150 9786819f930aea44d07d5aa3ef0f7554 114 Gene3D G3DSA:1.10.1790.10 16 111 1.2E-4 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS21465 5bc38c3122b6e3fec5be72a19e476078 65 SUPERFAMILY SSF142764 4 64 5.62E-11 T 14-09-2016 PAJ_RS21465 5bc38c3122b6e3fec5be72a19e476078 65 Pfam PF07005 Putative sugar-binding N-terminal domain 4 64 5.0E-10 T 14-09-2016 IPR010737 Putative sugar-binding, N-terminal domain PAJ_RS07610 633bda9390b0567b55645751fe0b0ace 103 Pfam PF06305 Protein of unknown function (DUF1049) 24 85 2.0E-19 T 14-09-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 PAJ_RS07610 633bda9390b0567b55645751fe0b0ace 103 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 94 22.921 T 14-09-2016 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 PAJ_RS07480 7e23e8adf9471508a57d7d388c3b06e3 116 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 5 115 1.1E-34 T 14-09-2016 IPR014320 Phage shock protein, PspC PAJ_RS07480 7e23e8adf9471508a57d7d388c3b06e3 116 Pfam PF04024 PspC domain 5 62 3.8E-15 T 14-09-2016 IPR007168 Phage shock protein, PspC, N-terminal PAJ_RS07480 7e23e8adf9471508a57d7d388c3b06e3 116 PANTHER PTHR33885 1 116 1.0E-25 T 14-09-2016 PAJ_RS12260 b75cb11bccd61d0a99b63072fceaf6af 330 PANTHER PTHR30472 42 327 1.6E-113 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS12260 b75cb11bccd61d0a99b63072fceaf6af 330 PANTHER PTHR30472:SF19 42 327 1.6E-113 T 14-09-2016 PAJ_RS12260 b75cb11bccd61d0a99b63072fceaf6af 330 Gene3D G3DSA:1.10.3470.10 21 327 8.8E-49 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS12260 b75cb11bccd61d0a99b63072fceaf6af 330 SUPERFAMILY SSF81345 20 326 2.09E-49 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS12260 b75cb11bccd61d0a99b63072fceaf6af 330 Pfam PF01032 FecCD transport family 43 326 2.8E-45 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS07425 70512ee965801549108b2f79609ee59e 218 PRINTS PR01837 MgtC/SapB protein signature 31 49 2.3E-48 T 14-09-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PAJ_RS07425 70512ee965801549108b2f79609ee59e 218 PRINTS PR01837 MgtC/SapB protein signature 92 116 2.3E-48 T 14-09-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PAJ_RS07425 70512ee965801549108b2f79609ee59e 218 PRINTS PR01837 MgtC/SapB protein signature 65 87 2.3E-48 T 14-09-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PAJ_RS07425 70512ee965801549108b2f79609ee59e 218 PRINTS PR01837 MgtC/SapB protein signature 12 31 2.3E-48 T 14-09-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PAJ_RS07425 70512ee965801549108b2f79609ee59e 218 Pfam PF02308 MgtC family 9 137 4.8E-40 T 14-09-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PAJ_RS07425 70512ee965801549108b2f79609ee59e 218 PANTHER PTHR33778 1 218 1.1E-64 T 14-09-2016 PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 Pfam PF02926 THUMP domain 21 153 2.7E-15 T 14-09-2016 IPR004114 THUMP domain GO:0003723 PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 474 657 1.7E-23 T 14-09-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 Gene3D G3DSA:3.40.50.150 148 214 2.8E-27 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 Gene3D G3DSA:3.40.50.150 255 347 2.8E-27 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 SUPERFAMILY SSF53335 258 373 8.0E-37 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 SUPERFAMILY SSF53335 146 217 8.0E-37 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 SMART SM00981 56 154 2.0E-19 T 14-09-2016 IPR004114 THUMP domain GO:0003723 PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 14-09-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 4 701 32.626 T 14-09-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 PIRSF PIRSF037618 1 702 1.0E-296 T 14-09-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 PANTHER PTHR18895:SF62 400 680 3.9E-127 T 14-09-2016 PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 SUPERFAMILY SSF53335 395 700 1.39E-68 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 PANTHER PTHR18895 400 680 3.9E-127 T 14-09-2016 PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 Gene3D G3DSA:3.40.50.150 431 700 7.4E-75 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 306 312 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PAJ_RS03790 6ce9fa983307a9c9d230e01971f4ee07 704 Pfam PF01170 Putative RNA methylase family UPF0020 162 375 3.8E-60 T 14-09-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PAJ_RS18720 a1b48ccd97ec57c52e0a740d42fa182f 356 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 14-09-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS18720 a1b48ccd97ec57c52e0a740d42fa182f 356 PANTHER PTHR21091 1 351 2.3E-163 T 14-09-2016 PAJ_RS18720 a1b48ccd97ec57c52e0a740d42fa182f 356 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 3.7E-142 T 14-09-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS18720 a1b48ccd97ec57c52e0a740d42fa182f 356 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 347 3.6E-137 T 14-09-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS18720 a1b48ccd97ec57c52e0a740d42fa182f 356 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 14-09-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS18720 a1b48ccd97ec57c52e0a740d42fa182f 356 Gene3D G3DSA:3.20.20.210 2 353 5.1E-159 T 14-09-2016 PAJ_RS18720 a1b48ccd97ec57c52e0a740d42fa182f 356 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.597 T 14-09-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PAJ_RS18720 a1b48ccd97ec57c52e0a740d42fa182f 356 SUPERFAMILY SSF51726 2 353 1.69E-123 T 14-09-2016 PAJ_RS18720 a1b48ccd97ec57c52e0a740d42fa182f 356 PANTHER PTHR21091:SF2 1 351 2.3E-163 T 14-09-2016 PAJ_RS09340 a84add5a5c81c12164ff36448fe70f37 350 Gene3D G3DSA:3.40.1190.20 5 331 3.8E-57 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS09340 a84add5a5c81c12164ff36448fe70f37 350 PANTHER PTHR10584:SF166 4 331 2.7E-49 T 14-09-2016 PAJ_RS09340 a84add5a5c81c12164ff36448fe70f37 350 Pfam PF00294 pfkB family carbohydrate kinase 25 317 4.0E-36 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS09340 a84add5a5c81c12164ff36448fe70f37 350 SUPERFAMILY SSF53613 6 328 1.87E-48 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS09340 a84add5a5c81c12164ff36448fe70f37 350 PANTHER PTHR10584 4 331 2.7E-49 T 14-09-2016 PAJ_RS11050 2b75fcccc667248858b06581d6e590b6 167 PRINTS PR01613 Escherichia coli P pili tip fibrillum PapF protein signature 134 150 2.2E-5 T 14-09-2016 IPR005430 P pili tip fibrillum PapF protein GO:0009289|GO:0009405 PAJ_RS11050 2b75fcccc667248858b06581d6e590b6 167 PRINTS PR01613 Escherichia coli P pili tip fibrillum PapF protein signature 34 57 2.2E-5 T 14-09-2016 IPR005430 P pili tip fibrillum PapF protein GO:0009289|GO:0009405 PAJ_RS11050 2b75fcccc667248858b06581d6e590b6 167 PRINTS PR01613 Escherichia coli P pili tip fibrillum PapF protein signature 151 167 2.2E-5 T 14-09-2016 IPR005430 P pili tip fibrillum PapF protein GO:0009289|GO:0009405 PAJ_RS11050 2b75fcccc667248858b06581d6e590b6 167 Pfam PF00419 Fimbrial protein 30 162 7.6E-14 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS11050 2b75fcccc667248858b06581d6e590b6 167 SUPERFAMILY SSF49401 40 166 3.85E-14 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS11050 2b75fcccc667248858b06581d6e590b6 167 Gene3D G3DSA:2.60.40.1090 28 166 7.5E-10 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS12235 28bb06ee97bfd88e47e360d69d0270f2 205 Gene3D G3DSA:1.10.10.60 14 76 3.8E-17 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS12235 28bb06ee97bfd88e47e360d69d0270f2 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 70 6.5E-10 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS12235 28bb06ee97bfd88e47e360d69d0270f2 205 SUPERFAMILY SSF46689 15 96 1.4E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS12235 28bb06ee97bfd88e47e360d69d0270f2 205 PANTHER PTHR30055 8 204 1.9E-33 T 14-09-2016 PAJ_RS12235 28bb06ee97bfd88e47e360d69d0270f2 205 PANTHER PTHR30055:SF79 8 204 1.9E-33 T 14-09-2016 PAJ_RS12235 28bb06ee97bfd88e47e360d69d0270f2 205 Gene3D G3DSA:1.10.357.10 80 204 5.5E-19 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS12235 28bb06ee97bfd88e47e360d69d0270f2 205 SUPERFAMILY SSF48498 92 204 3.71E-13 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS03760 35490f176625a13cb5bbfc144ce7f229 183 Pfam PF03358 NADPH-dependent FMN reductase 1 139 6.3E-32 T 14-09-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 PAJ_RS03760 35490f176625a13cb5bbfc144ce7f229 183 SUPERFAMILY SSF52218 1 165 1.16E-30 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS03760 35490f176625a13cb5bbfc144ce7f229 183 Gene3D G3DSA:3.40.50.360 1 171 1.5E-33 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS03760 35490f176625a13cb5bbfc144ce7f229 183 PANTHER PTHR30543 1 177 2.0E-46 T 14-09-2016 PAJ_RS03760 35490f176625a13cb5bbfc144ce7f229 183 PANTHER PTHR30543:SF1 1 177 2.0E-46 T 14-09-2016 PAJ_RS03760 35490f176625a13cb5bbfc144ce7f229 183 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 2 169 4.6E-68 T 14-09-2016 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 PANTHER PTHR30251:SF8 6 229 1.8E-48 T 14-09-2016 PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 21 137 2.0E-30 T 14-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 SUPERFAMILY SSF49584 139 223 1.1E-12 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 SUPERFAMILY SSF49354 17 137 1.2E-31 T 14-09-2016 IPR008962 PapD-like PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 PANTHER PTHR30251 6 229 1.8E-48 T 14-09-2016 PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 Gene3D G3DSA:2.60.40.1070 141 223 2.0E-13 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 160 221 4.9E-10 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 Gene3D G3DSA:2.60.40.360 21 134 2.4E-32 T 14-09-2016 IPR008962 PapD-like PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 PRINTS PR00969 Pili chaperone signature 119 134 7.6E-22 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 PRINTS PR00969 Pili chaperone signature 154 169 7.6E-22 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 PRINTS PR00969 Pili chaperone signature 21 30 7.6E-22 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 PRINTS PR00969 Pili chaperone signature 65 86 7.6E-22 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS20775 58267d0471fc00eb534e9b4b03ced835 229 PRINTS PR00969 Pili chaperone signature 93 110 7.6E-22 T 14-09-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PAJ_RS05650 a48e0fd0ecbc702c39b044116c769468 490 PANTHER PTHR39576 55 471 4.2E-172 T 14-09-2016 PAJ_RS05650 a48e0fd0ecbc702c39b044116c769468 490 PANTHER PTHR39576:SF1 55 471 4.2E-172 T 14-09-2016 PAJ_RS05650 a48e0fd0ecbc702c39b044116c769468 490 Pfam PF11924 Invasin beta-domain of outer membrane 77 354 1.9E-95 T 14-09-2016 IPR024519 Invasin beta-domain of outer membrane PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 Hamap MF_00453 Phosphoenolpyruvate carboxykinase [ATP] [pckA]. 15 537 54.406 T 14-09-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 Gene3D G3DSA:3.40.449.10 21 226 1.5E-86 T 14-09-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 538 1.2E-271 T 14-09-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 Pfam PF01293 Phosphoenolpyruvate carboxykinase 21 490 1.5E-210 T 14-09-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 PANTHER PTHR30031 15 539 0.0 T 14-09-2016 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 Gene3D G3DSA:3.90.228.20 350 538 1.5E-120 T 14-09-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 Gene3D G3DSA:3.90.228.20 227 289 1.5E-120 T 14-09-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 SUPERFAMILY SSF53795 228 538 9.16E-128 T 14-09-2016 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 PIRSF PIRSF006294 3 539 8.1E-229 T 14-09-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 264 279 - T 14-09-2016 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 PANTHER PTHR30031:SF0 15 539 0.0 T 14-09-2016 PAJ_RS16135 00f81428d86f663005b001f9ca2eea40 539 SUPERFAMILY SSF68923 9 226 5.76E-89 T 14-09-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 PAJ_RS18945 61b48a192ca601d3ff2423c971cdda27 88 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 63 2.0E-22 T 14-09-2016 IPR014318 Phage shock protein, PspG PAJ_RS18945 61b48a192ca601d3ff2423c971cdda27 88 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 62 3.9E-23 T 14-09-2016 IPR014318 Phage shock protein, PspG PAJ_RS18920 d1946a97791b655ec1964b81b1d7de4d 440 PANTHER PTHR11206:SF94 4 434 3.2E-130 T 14-09-2016 PAJ_RS18920 d1946a97791b655ec1964b81b1d7de4d 440 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 410 4.2E-93 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS18920 d1946a97791b655ec1964b81b1d7de4d 440 Pfam PF01554 MatE 17 177 6.6E-30 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS18920 d1946a97791b655ec1964b81b1d7de4d 440 Pfam PF01554 MatE 242 383 8.3E-11 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PAJ_RS18920 d1946a97791b655ec1964b81b1d7de4d 440 PANTHER PTHR11206 4 434 3.2E-130 T 14-09-2016 PAJ_RS08915 217b6864a20d2341cf014964f435c12b 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 73 89 1.2E-30 T 14-09-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 PAJ_RS08915 217b6864a20d2341cf014964f435c12b 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 56 72 1.2E-30 T 14-09-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 PAJ_RS08915 217b6864a20d2341cf014964f435c12b 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 102 117 1.2E-30 T 14-09-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 PAJ_RS08915 217b6864a20d2341cf014964f435c12b 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 89 102 1.2E-30 T 14-09-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 PAJ_RS08915 217b6864a20d2341cf014964f435c12b 137 SUPERFAMILY SSF101801 54 135 8.5E-28 T 14-09-2016 IPR001543 Surface presentation of antigen (SpoA) PAJ_RS08915 217b6864a20d2341cf014964f435c12b 137 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 56 126 3.9E-27 T 14-09-2016 IPR001543 Surface presentation of antigen (SpoA) PAJ_RS08915 217b6864a20d2341cf014964f435c12b 137 Gene3D G3DSA:2.30.330.10 47 136 1.8E-40 T 14-09-2016 PAJ_RS08915 217b6864a20d2341cf014964f435c12b 137 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 53 128 3.1E-34 T 14-09-2016 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 PAJ_RS08915 217b6864a20d2341cf014964f435c12b 137 Pfam PF16973 Flagellar motor switch protein FliN N-terminal 1 49 7.6E-21 T 14-09-2016 IPR031576 Flagellar motor switch protein FliN, N-terminal PAJ_RS08915 217b6864a20d2341cf014964f435c12b 137 PANTHER PTHR22617 7 135 2.6E-36 T 14-09-2016 PAJ_RS04435 845249067d06e03e4ea5f16e69a8e546 143 Pfam PF05130 FlgN protein 1 132 9.6E-22 T 14-09-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 PAJ_RS04435 845249067d06e03e4ea5f16e69a8e546 143 Gene3D G3DSA:1.20.58.300 1 119 2.8E-12 T 14-09-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 PAJ_RS04435 845249067d06e03e4ea5f16e69a8e546 143 SUPERFAMILY SSF140566 1 118 1.18E-16 T 14-09-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 PAJ_RS03865 b4ed57c87c7433d7137aac1186ba9db5 212 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 23 203 2.8E-37 T 14-09-2016 IPR018635 Uncharacterised protein family UPF0319 PAJ_RS03865 b4ed57c87c7433d7137aac1186ba9db5 212 PANTHER PTHR38108 2 212 2.4E-38 T 14-09-2016 PAJ_RS03865 b4ed57c87c7433d7137aac1186ba9db5 212 PANTHER PTHR38108:SF1 2 212 2.4E-38 T 14-09-2016 PAJ_RS03210 6ae0d53157d3c8efba5389116f9eae89 451 SUPERFAMILY SSF51338 362 450 5.76E-6 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PAJ_RS03210 6ae0d53157d3c8efba5389116f9eae89 451 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 2 451 7.9E-193 T 14-09-2016 IPR010252 Formiminoglutamate deiminase PAJ_RS03210 6ae0d53157d3c8efba5389116f9eae89 451 Gene3D G3DSA:3.20.20.140 54 393 4.4E-73 T 14-09-2016 PAJ_RS03210 6ae0d53157d3c8efba5389116f9eae89 451 SUPERFAMILY SSF51556 50 374 4.81E-70 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS03210 6ae0d53157d3c8efba5389116f9eae89 451 Pfam PF01979 Amidohydrolase family 48 427 3.8E-32 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 PAJ_RS03210 6ae0d53157d3c8efba5389116f9eae89 451 PANTHER PTHR11271 15 451 1.3E-161 T 14-09-2016 PAJ_RS03210 6ae0d53157d3c8efba5389116f9eae89 451 PANTHER PTHR11271:SF4 15 451 1.3E-161 T 14-09-2016 IPR010252 Formiminoglutamate deiminase PAJ_RS02335 1bb72a5b6f58e405f1ee0bb12c64c87f 397 Pfam PF01594 Domain of unknown function DUF20 10 339 3.4E-50 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like PAJ_RS02335 1bb72a5b6f58e405f1ee0bb12c64c87f 397 PANTHER PTHR21716:SF13 11 397 1.5E-81 T 14-09-2016 PAJ_RS02335 1bb72a5b6f58e405f1ee0bb12c64c87f 397 PANTHER PTHR21716 11 397 1.5E-81 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like PAJ_RS08635 dbb63e63cf720fe9db3345cd43174a3f 428 SUPERFAMILY SSF54909 59 421 1.09E-93 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS08635 dbb63e63cf720fe9db3345cd43174a3f 428 PANTHER PTHR30521 49 428 2.1E-176 T 14-09-2016 PAJ_RS08635 dbb63e63cf720fe9db3345cd43174a3f 428 Pfam PF04261 Dyp-type peroxidase family 66 414 1.5E-111 T 14-09-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- PAJ_RS08635 dbb63e63cf720fe9db3345cd43174a3f 428 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 66 414 1.6E-97 T 14-09-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- PAJ_RS08635 dbb63e63cf720fe9db3345cd43174a3f 428 TIGRFAM TIGR01412 tat_substr_1: Tat-translocated enzyme 6 427 4.7E-170 T 14-09-2016 IPR006313 Deferrochelatase/peroxidase EfeB GO:0004601|GO:0015684|GO:0020037|GO:0033212 KEGG: 00480+1.11.1.- PAJ_RS08635 dbb63e63cf720fe9db3345cd43174a3f 428 PANTHER PTHR30521:SF4 49 428 2.1E-176 T 14-09-2016 PAJ_RS17775 fd9d7e09c1a6d9930190da7e8d58c877 153 Gene3D G3DSA:3.30.300.20 2 150 8.0E-61 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta PAJ_RS17775 fd9d7e09c1a6d9930190da7e8d58c877 153 Pfam PF02566 OsmC-like protein 53 149 1.1E-15 T 14-09-2016 IPR003718 OsmC/Ohr family PAJ_RS17775 fd9d7e09c1a6d9930190da7e8d58c877 153 SUPERFAMILY SSF82784 5 150 2.75E-44 T 14-09-2016 IPR003718 OsmC/Ohr family PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 SUPERFAMILY SSF46785 5 90 1.61E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 Gene3D G3DSA:3.40.190.10 181 266 1.6E-20 T 14-09-2016 PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.3E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.3E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.3E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 SUPERFAMILY SSF53850 92 297 1.86E-44 T 14-09-2016 PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 Pfam PF03466 LysR substrate binding domain 91 294 4.3E-43 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 Gene3D G3DSA:1.10.10.10 5 90 3.3E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 3.9E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 PANTHER PTHR30419:SF3 1 296 4.1E-79 T 14-09-2016 PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 PANTHER PTHR30419 1 296 4.1E-79 T 14-09-2016 PAJ_RS17805 5a273cf62ae801b06ad32f548ca67405 299 Gene3D G3DSA:3.40.190.10 94 180 4.6E-24 T 14-09-2016 PAJ_RS10240 2e1f7e8e5ff3151f6f33e0edbe2f5c66 312 Pfam PF00294 pfkB family carbohydrate kinase 14 292 6.7E-66 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB PAJ_RS10240 2e1f7e8e5ff3151f6f33e0edbe2f5c66 312 Gene3D G3DSA:3.40.1190.20 37 310 2.2E-84 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS10240 2e1f7e8e5ff3151f6f33e0edbe2f5c66 312 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 5 308 4.6E-99 T 14-09-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 PAJ_RS10240 2e1f7e8e5ff3151f6f33e0edbe2f5c66 312 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 5 308 6.1E-102 T 14-09-2016 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 PAJ_RS10240 2e1f7e8e5ff3151f6f33e0edbe2f5c66 312 PANTHER PTHR10584:SF170 1 308 1.5E-124 T 14-09-2016 PAJ_RS10240 2e1f7e8e5ff3151f6f33e0edbe2f5c66 312 SUPERFAMILY SSF53613 7 291 6.39E-67 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS10240 2e1f7e8e5ff3151f6f33e0edbe2f5c66 312 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS10240 2e1f7e8e5ff3151f6f33e0edbe2f5c66 312 PANTHER PTHR10584 1 308 1.5E-124 T 14-09-2016 PAJ_RS10240 2e1f7e8e5ff3151f6f33e0edbe2f5c66 312 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PAJ_RS10240 2e1f7e8e5ff3151f6f33e0edbe2f5c66 312 PIRSF PIRSF000535 2 311 5.1E-115 T 14-09-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 PAJ_RS13265 2bad2969eb4274fa6d3d2d8f774af924 297 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 297 31.648 T 14-09-2016 IPR023009 Tyrosine recombinase XerC/XerD PAJ_RS13265 2bad2969eb4274fa6d3d2d8f774af924 297 SUPERFAMILY SSF56349 5 287 3.53E-59 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PAJ_RS13265 2bad2969eb4274fa6d3d2d8f774af924 297 Gene3D G3DSA:1.10.443.10 112 287 5.5E-59 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS13265 2bad2969eb4274fa6d3d2d8f774af924 297 PANTHER PTHR30349 5 297 5.1E-122 T 14-09-2016 PAJ_RS13265 2bad2969eb4274fa6d3d2d8f774af924 297 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 89 1.6E-24 T 14-09-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 PAJ_RS13265 2bad2969eb4274fa6d3d2d8f774af924 297 Pfam PF00589 Phage integrase family 112 283 2.3E-55 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PAJ_RS13265 2bad2969eb4274fa6d3d2d8f774af924 297 PANTHER PTHR30349:SF5 5 297 5.1E-122 T 14-09-2016 PAJ_RS13265 2bad2969eb4274fa6d3d2d8f774af924 297 Gene3D G3DSA:1.10.150.130 5 97 4.4E-29 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal PAJ_RS13265 2bad2969eb4274fa6d3d2d8f774af924 297 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 8 297 1.2E-118 T 14-09-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 PAJ_RS13265 2bad2969eb4274fa6d3d2d8f774af924 297 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 3 297 64.225 T 14-09-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 PAJ_RS15330 40590d827d2927624bc158105fc6b0f9 249 Pfam PF00326 Prolyl oligopeptidase family 89 232 2.9E-13 T 14-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 PAJ_RS15330 40590d827d2927624bc158105fc6b0f9 249 PANTHER PTHR17630 176 216 8.5E-12 T 14-09-2016 PAJ_RS15330 40590d827d2927624bc158105fc6b0f9 249 PANTHER PTHR17630 5 144 8.5E-12 T 14-09-2016 PAJ_RS15330 40590d827d2927624bc158105fc6b0f9 249 Gene3D G3DSA:3.40.50.1820 7 249 3.6E-48 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS15330 40590d827d2927624bc158105fc6b0f9 249 SUPERFAMILY SSF53474 12 249 1.09E-35 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS09270 3984f7200a511dc96396ec9161ca6f13 499 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 68 492 3.7E-195 T 14-09-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath PAJ_RS09270 3984f7200a511dc96396ec9161ca6f13 499 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 18 492 4.6E-224 T 14-09-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath PAJ_RS09270 3984f7200a511dc96396ec9161ca6f13 499 PANTHER PTHR35565:SF3 1 497 0.0 T 14-09-2016 PAJ_RS09270 3984f7200a511dc96396ec9161ca6f13 499 PANTHER PTHR35565 1 497 0.0 T 14-09-2016 PAJ_RS10045 259beb91c8cd864e90403a3c369a29fa 458 PANTHER PTHR30217 1 206 2.2E-230 T 14-09-2016 PAJ_RS10045 259beb91c8cd864e90403a3c369a29fa 458 PANTHER PTHR30217:SF6 246 455 2.2E-230 T 14-09-2016 PAJ_RS10045 259beb91c8cd864e90403a3c369a29fa 458 PANTHER PTHR30217:SF6 1 206 2.2E-230 T 14-09-2016 PAJ_RS10045 259beb91c8cd864e90403a3c369a29fa 458 Pfam PF01136 Peptidase family U32 75 343 3.8E-96 T 14-09-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS10045 259beb91c8cd864e90403a3c369a29fa 458 ProSitePatterns PS01276 Peptidase family U32 signature. 162 180 - T 14-09-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS10045 259beb91c8cd864e90403a3c369a29fa 458 Pfam PF16325 Peptidase family U32 C-terminal domain 359 440 8.2E-18 T 14-09-2016 IPR032525 Peptidase family U32, C-terminal KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS10045 259beb91c8cd864e90403a3c369a29fa 458 PANTHER PTHR30217 246 455 2.2E-230 T 14-09-2016 PAJ_RS02575 abb92de0b35fc385e35118776b229808 250 PANTHER PTHR19288 3 247 7.0E-164 T 14-09-2016 PAJ_RS02575 abb92de0b35fc385e35118776b229808 250 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 6 223 1.4E-62 T 14-09-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA PAJ_RS02575 abb92de0b35fc385e35118776b229808 250 SUPERFAMILY SSF56784 1 247 4.99E-66 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS02575 abb92de0b35fc385e35118776b229808 250 PANTHER PTHR19288:SF40 3 247 7.0E-164 T 14-09-2016 PAJ_RS02575 abb92de0b35fc385e35118776b229808 250 Gene3D G3DSA:3.40.50.10410 83 173 1.4E-31 T 14-09-2016 IPR023215 Nitrophenylphosphatase-like domain PAJ_RS02575 abb92de0b35fc385e35118776b229808 250 Pfam PF13344 Haloacid dehalogenase-like hydrolase 6 105 3.7E-24 T 14-09-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA PAJ_RS02575 abb92de0b35fc385e35118776b229808 250 Pfam PF13242 HAD-hyrolase-like 174 246 3.7E-21 T 14-09-2016 PAJ_RS02575 abb92de0b35fc385e35118776b229808 250 Gene3D G3DSA:3.40.50.1000 174 247 5.1E-42 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS02575 abb92de0b35fc385e35118776b229808 250 Gene3D G3DSA:3.40.50.1000 1 79 5.1E-42 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS09085 c885d1ee6964843e68706a7ca103179b 635 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 496 627 8.2E-23 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS09085 c885d1ee6964843e68706a7ca103179b 635 PANTHER PTHR30185:SF5 3 635 1.2E-83 T 14-09-2016 PAJ_RS09085 c885d1ee6964843e68706a7ca103179b 635 PANTHER PTHR30185 3 635 1.2E-83 T 14-09-2016 PAJ_RS09085 c885d1ee6964843e68706a7ca103179b 635 SUPERFAMILY SSF63520 295 390 5.36E-18 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS09085 c885d1ee6964843e68706a7ca103179b 635 SUPERFAMILY SSF55804 499 628 2.09E-26 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS09085 c885d1ee6964843e68706a7ca103179b 635 Pfam PF00874 PRD domain 299 386 2.4E-16 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS09085 c885d1ee6964843e68706a7ca103179b 635 Pfam PF08279 HTH domain 8 43 2.5E-5 T 14-09-2016 IPR013196 Helix-turn-helix, type 11 PAJ_RS09085 c885d1ee6964843e68706a7ca103179b 635 Gene3D G3DSA:1.10.10.10 5 64 2.6E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS09085 c885d1ee6964843e68706a7ca103179b 635 Gene3D G3DSA:3.40.930.10 490 631 8.8E-30 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS09085 c885d1ee6964843e68706a7ca103179b 635 Gene3D G3DSA:1.10.1790.10 294 390 1.5E-18 T 14-09-2016 IPR011608 PRD domain GO:0006355 PAJ_RS16625 ae5d726b6901881ecfe269af88c5d92c 278 PANTHER PTHR32243:SF39 2 277 2.1E-83 T 14-09-2016 PAJ_RS16625 ae5d726b6901881ecfe269af88c5d92c 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 262 2.4E-11 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16625 ae5d726b6901881ecfe269af88c5d92c 278 SUPERFAMILY SSF161098 10 269 3.83E-48 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16625 ae5d726b6901881ecfe269af88c5d92c 278 Gene3D G3DSA:1.10.3720.10 4 263 2.0E-41 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16625 ae5d726b6901881ecfe269af88c5d92c 278 PANTHER PTHR32243 2 277 2.1E-83 T 14-09-2016 PAJ_RS16570 fec94fd44174762ec45666e362f92f14 145 Pfam PF00582 Universal stress protein family 3 138 1.8E-21 T 14-09-2016 IPR006016 UspA GO:0006950 PAJ_RS16570 fec94fd44174762ec45666e362f92f14 145 SUPERFAMILY SSF52402 3 139 1.76E-32 T 14-09-2016 PAJ_RS16570 fec94fd44174762ec45666e362f92f14 145 PIRSF PIRSF006276 1 141 8.7E-53 T 14-09-2016 IPR006015 Universal stress protein A PAJ_RS16570 fec94fd44174762ec45666e362f92f14 145 Gene3D G3DSA:3.40.50.620 3 139 1.4E-31 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS03615 83eaab63702a00377b008a5491ede15d 587 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 11 404 1.8E-160 T 14-09-2016 IPR003776 YcaO-like domain PAJ_RS03615 83eaab63702a00377b008a5491ede15d 587 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 59 391 1.5E-80 T 14-09-2016 IPR003776 YcaO-like domain PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 Gene3D G3DSA:3.90.1170.10 22 133 9.6E-54 T 14-09-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 2.9E-40 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 2.9E-40 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 2.9E-40 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 2.9E-40 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 14-09-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 38.251 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 9.1E-47 T 14-09-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 SUPERFAMILY SSF54686 3 133 4.32E-55 T 14-09-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 81 92 - T 14-09-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.6E-59 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PAJ_RS15820 9f35cbf385575a68bf36bace88078783 136 PANTHER PTHR12220 1 136 1.9E-76 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PAJ_RS09910 5dd1bc384064ef3ac069345eaf4c7e24 446 Pfam PF13440 Polysaccharide biosynthesis protein 28 320 5.2E-54 T 14-09-2016 PAJ_RS09910 5dd1bc384064ef3ac069345eaf4c7e24 446 PANTHER PTHR30250:SF3 1 438 8.2E-54 T 14-09-2016 PAJ_RS09910 5dd1bc384064ef3ac069345eaf4c7e24 446 PANTHER PTHR30250 1 438 8.2E-54 T 14-09-2016 PAJ_RS21715 7f1d76698fbe70223504991c00325f70 74 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 40 57 - T 14-09-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 PAJ_RS21715 7f1d76698fbe70223504991c00325f70 74 Gene3D G3DSA:3.40.1180.10 1 74 9.5E-30 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PAJ_RS21715 7f1d76698fbe70223504991c00325f70 74 SUPERFAMILY SSF64005 1 74 4.32E-28 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PAJ_RS21715 7f1d76698fbe70223504991c00325f70 74 Pfam PF01255 Putative undecaprenyl diphosphate synthase 1 74 1.1E-23 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PAJ_RS21715 7f1d76698fbe70223504991c00325f70 74 PANTHER PTHR10291 1 74 2.7E-35 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PAJ_RS02780 a8f6e9d9ac5dae6ef054e9fa829b3306 142 PANTHER PTHR30558:SF7 1 141 1.1E-70 T 14-09-2016 PAJ_RS02780 a8f6e9d9ac5dae6ef054e9fa829b3306 142 PANTHER PTHR30558 1 141 1.1E-70 T 14-09-2016 PAJ_RS02780 a8f6e9d9ac5dae6ef054e9fa829b3306 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 141 3.5E-24 T 14-09-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 PAJ_RS02780 a8f6e9d9ac5dae6ef054e9fa829b3306 142 TIGRFAM TIGR02801 tolR: protein TolR 13 140 1.3E-38 T 14-09-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 PAJ_RS02625 d1b615674d6358ad97ce4d24663370a9 254 SUPERFAMILY SSF53474 12 252 9.44E-48 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS02625 d1b615674d6358ad97ce4d24663370a9 254 Pfam PF12697 Alpha/beta hydrolase family 19 245 4.3E-19 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 PAJ_RS02625 d1b615674d6358ad97ce4d24663370a9 254 Gene3D G3DSA:3.40.50.1820 14 253 6.6E-46 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS02625 d1b615674d6358ad97ce4d24663370a9 254 PANTHER PTHR10992:SF768 13 254 6.2E-68 T 14-09-2016 PAJ_RS02625 d1b615674d6358ad97ce4d24663370a9 254 PANTHER PTHR10992 13 254 6.2E-68 T 14-09-2016 PAJ_RS19480 820ad59f320ad60fa9a07931164c766f 173 PANTHER PTHR23091:SF187 1 163 2.2E-30 T 14-09-2016 PAJ_RS19480 820ad59f320ad60fa9a07931164c766f 173 Gene3D G3DSA:3.40.630.30 1 168 1.5E-44 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS19480 820ad59f320ad60fa9a07931164c766f 173 PANTHER PTHR23091 1 163 2.2E-30 T 14-09-2016 PAJ_RS19480 820ad59f320ad60fa9a07931164c766f 173 SUPERFAMILY SSF55729 4 165 9.12E-35 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS19480 820ad59f320ad60fa9a07931164c766f 173 Pfam PF00583 Acetyltransferase (GNAT) family 59 138 4.0E-14 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS10110 98b967e84846a84473d671698a2a1742 370 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 107 350 2.9E-98 T 14-09-2016 IPR019591 Mrp/NBP35 ATP-binding protein PAJ_RS10110 98b967e84846a84473d671698a2a1742 370 Hamap MF_02040 Iron-sulfur cluster carrier protein. 102 351 37.021 T 14-09-2016 IPR019591 Mrp/NBP35 ATP-binding protein PAJ_RS10110 98b967e84846a84473d671698a2a1742 370 Gene3D G3DSA:3.40.50.300 100 349 2.0E-101 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10110 98b967e84846a84473d671698a2a1742 370 PANTHER PTHR23264:SF19 9 368 5.2E-181 T 14-09-2016 PAJ_RS10110 98b967e84846a84473d671698a2a1742 370 PANTHER PTHR23264 9 368 5.2E-181 T 14-09-2016 IPR019591 Mrp/NBP35 ATP-binding protein PAJ_RS10110 98b967e84846a84473d671698a2a1742 370 SUPERFAMILY SSF52540 109 356 1.59E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS10110 98b967e84846a84473d671698a2a1742 370 ProSitePatterns PS01215 Mrp family signature. 214 230 - T 14-09-2016 IPR000808 Mrp, conserved site GO:0005524 PAJ_RS02320 15297e2aaf38136558c67f395bed3c57 89 Gene3D G3DSA:2.60.120.10 17 84 1.0E-11 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS02320 15297e2aaf38136558c67f395bed3c57 89 SUPERFAMILY SSF51182 17 85 1.85E-12 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS02320 15297e2aaf38136558c67f395bed3c57 89 Pfam PF07883 Cupin domain 21 73 1.0E-8 T 14-09-2016 IPR013096 Cupin 2, conserved barrel PAJ_RS05685 c61baab81f13ab97b99bc5e5229018ca 163 PANTHER PTHR38102 1 147 9.9E-47 T 14-09-2016 PAJ_RS05685 c61baab81f13ab97b99bc5e5229018ca 163 PIRSF PIRSF034445 2 151 1.2E-25 T 14-09-2016 IPR012899 LTXXQ motif family protein GO:0042597 PAJ_RS05685 c61baab81f13ab97b99bc5e5229018ca 163 Pfam PF07813 LTXXQ motif family protein 43 140 1.8E-18 T 14-09-2016 IPR012899 LTXXQ motif family protein GO:0042597 PAJ_RS05685 c61baab81f13ab97b99bc5e5229018ca 163 PANTHER PTHR38102:SF1 1 147 9.9E-47 T 14-09-2016 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 SUPERFAMILY SSF52374 3 156 6.44E-47 T 14-09-2016 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 1.3E-59 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 5.0E-52 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 5.0E-52 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 5.0E-52 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 5.0E-52 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 5.0E-52 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 PANTHER PTHR21342 1 158 1.0E-83 T 14-09-2016 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 Gene3D G3DSA:3.40.50.620 2 157 4.7E-56 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 PANTHER PTHR21342:SF1 1 158 1.0E-83 T 14-09-2016 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 36.066 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 12 78 0.002 T 14-09-2016 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 62 1.7E-18 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PAJ_RS17280 1c2e9558e9aa4772494a3fdb7ca0b22c 159 Pfam PF01467 Cytidylyltransferase-like 6 134 6.9E-22 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PAJ_RS19125 62014f548e5d1639184655fe12e353ad 395 Pfam PF07690 Major Facilitator Superfamily 26 337 8.9E-37 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS19125 62014f548e5d1639184655fe12e353ad 395 PANTHER PTHR23501:SF28 18 385 1.5E-106 T 14-09-2016 PAJ_RS19125 62014f548e5d1639184655fe12e353ad 395 SUPERFAMILY SSF103473 13 392 1.96E-56 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS19125 62014f548e5d1639184655fe12e353ad 395 PANTHER PTHR23501 18 385 1.5E-106 T 14-09-2016 PAJ_RS19125 62014f548e5d1639184655fe12e353ad 395 Gene3D G3DSA:1.20.1250.20 22 199 1.8E-27 T 14-09-2016 PAJ_RS19125 62014f548e5d1639184655fe12e353ad 395 Gene3D G3DSA:1.20.1250.20 220 389 5.9E-17 T 14-09-2016 PAJ_RS20250 30620376bcf20475b8544a1f532a16d2 287 PANTHER PTHR30128:SF11 170 276 1.1E-12 T 14-09-2016 PAJ_RS20250 30620376bcf20475b8544a1f532a16d2 287 Pfam PF00691 OmpA family 130 254 2.4E-9 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS20250 30620376bcf20475b8544a1f532a16d2 287 PANTHER PTHR30128 170 276 1.1E-12 T 14-09-2016 PAJ_RS20250 30620376bcf20475b8544a1f532a16d2 287 PANTHER PTHR30128 99 150 1.1E-12 T 14-09-2016 PAJ_RS20250 30620376bcf20475b8544a1f532a16d2 287 SUPERFAMILY SSF103088 105 260 1.28E-18 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS20250 30620376bcf20475b8544a1f532a16d2 287 Gene3D G3DSA:3.30.1330.60 114 261 1.2E-25 T 14-09-2016 IPR006665 OmpA-like domain PAJ_RS20250 30620376bcf20475b8544a1f532a16d2 287 PANTHER PTHR30128:SF11 99 150 1.1E-12 T 14-09-2016 PAJ_RS14095 6abc4781bf60b1e71157f9e784daac68 204 SUPERFAMILY SSF46689 3 68 3.28E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS14095 6abc4781bf60b1e71157f9e784daac68 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 52 3.9E-10 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS14095 6abc4781bf60b1e71157f9e784daac68 204 PANTHER PTHR30055 3 179 2.7E-34 T 14-09-2016 PAJ_RS14095 6abc4781bf60b1e71157f9e784daac68 204 Gene3D G3DSA:1.10.357.10 3 186 4.9E-34 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS14095 6abc4781bf60b1e71157f9e784daac68 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 3.8E-5 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS14095 6abc4781bf60b1e71157f9e784daac68 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 3.8E-5 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS14095 6abc4781bf60b1e71157f9e784daac68 204 SUPERFAMILY SSF48498 78 191 6.07E-16 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS14095 6abc4781bf60b1e71157f9e784daac68 204 Pfam PF16925 Bacterial transcriptional repressor C-terminal 79 187 1.1E-15 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS14095 6abc4781bf60b1e71157f9e784daac68 204 PANTHER PTHR30055:SF20 3 179 2.7E-34 T 14-09-2016 PAJ_RS12890 ba91010646c2a6101c9b89432e87e054 250 PANTHER PTHR30136 3 247 2.8E-35 T 14-09-2016 PAJ_RS12890 ba91010646c2a6101c9b89432e87e054 250 SMART SM00346 9 98 0.0052 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS12890 ba91010646c2a6101c9b89432e87e054 250 Pfam PF09339 IclR helix-turn-helix domain 12 60 9.3E-11 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PAJ_RS12890 ba91010646c2a6101c9b89432e87e054 250 Gene3D G3DSA:1.10.10.10 3 66 6.2E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12890 ba91010646c2a6101c9b89432e87e054 250 SUPERFAMILY SSF46785 11 80 2.19E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12890 ba91010646c2a6101c9b89432e87e054 250 SUPERFAMILY SSF55781 75 248 1.83E-30 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS12890 ba91010646c2a6101c9b89432e87e054 250 Gene3D G3DSA:3.30.450.40 82 247 4.1E-31 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS12890 ba91010646c2a6101c9b89432e87e054 250 Pfam PF01614 Bacterial transcriptional regulator 128 247 4.5E-11 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal PAJ_RS12480 1aef9157b5ce7df18c7e02935a10e945 311 Gene3D G3DSA:3.20.20.330 4 309 3.2E-93 T 14-09-2016 IPR003726 Homocysteine-binding domain PAJ_RS12480 1aef9157b5ce7df18c7e02935a10e945 311 PANTHER PTHR21091 6 306 5.9E-101 T 14-09-2016 PAJ_RS12480 1aef9157b5ce7df18c7e02935a10e945 311 PANTHER PTHR21091:SF123 6 306 5.9E-101 T 14-09-2016 PAJ_RS12480 1aef9157b5ce7df18c7e02935a10e945 311 SUPERFAMILY SSF82282 9 310 1.44E-83 T 14-09-2016 IPR003726 Homocysteine-binding domain PAJ_RS12480 1aef9157b5ce7df18c7e02935a10e945 311 Pfam PF02574 Homocysteine S-methyltransferase 16 306 2.7E-75 T 14-09-2016 IPR003726 Homocysteine-binding domain PAJ_RS14715 8b3dea6bdc3a5b06cfa5d8aa48bf4976 170 SUPERFAMILY SSF88874 4 169 2.49E-34 T 14-09-2016 PAJ_RS14715 8b3dea6bdc3a5b06cfa5d8aa48bf4976 170 Gene3D G3DSA:3.90.1340.10 5 61 3.2E-13 T 14-09-2016 IPR011083 Phage tail collar domain PAJ_RS14715 8b3dea6bdc3a5b06cfa5d8aa48bf4976 170 PANTHER PTHR35191 1 169 1.3E-14 T 14-09-2016 PAJ_RS14715 8b3dea6bdc3a5b06cfa5d8aa48bf4976 170 Pfam PF07484 Phage Tail Collar Domain 10 57 1.2E-12 T 14-09-2016 IPR011083 Phage tail collar domain PAJ_RS16710 cf8ba83fe7140980185978bf07bef8fa 610 SMART SM00382 387 578 1.3E-20 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16710 cf8ba83fe7140980185978bf07bef8fa 610 PANTHER PTHR24221:SF203 3 610 0.0 T 14-09-2016 PAJ_RS16710 cf8ba83fe7140980185978bf07bef8fa 610 Pfam PF00664 ABC transporter transmembrane region 43 291 4.6E-12 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS16710 cf8ba83fe7140980185978bf07bef8fa 610 Gene3D G3DSA:3.40.50.300 361 597 7.3E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16710 cf8ba83fe7140980185978bf07bef8fa 610 Gene3D G3DSA:1.20.1560.10 30 334 7.8E-33 T 14-09-2016 PAJ_RS16710 cf8ba83fe7140980185978bf07bef8fa 610 ProSitePatterns PS00211 ABC transporters family signature. 504 518 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS16710 cf8ba83fe7140980185978bf07bef8fa 610 Pfam PF00005 ABC transporter 379 532 5.4E-35 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS16710 cf8ba83fe7140980185978bf07bef8fa 610 SUPERFAMILY SSF90123 26 343 2.88E-47 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PAJ_RS16710 cf8ba83fe7140980185978bf07bef8fa 610 PANTHER PTHR24221 3 610 0.0 T 14-09-2016 PAJ_RS16710 cf8ba83fe7140980185978bf07bef8fa 610 SUPERFAMILY SSF52540 352 602 1.71E-86 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS09220 007c0dd8512462818b97d13239292c99 349 PANTHER PTHR35564 28 345 3.9E-91 T 14-09-2016 PAJ_RS09220 007c0dd8512462818b97d13239292c99 349 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 28 329 3.0E-99 T 14-09-2016 IPR010732 Type VI secretion, TssG-like PAJ_RS09220 007c0dd8512462818b97d13239292c99 349 Pfam PF06996 Type VI secretion, VasB, ImpH, VC_A0111 27 329 3.8E-102 T 14-09-2016 IPR010732 Type VI secretion, TssG-like PAJ_RS09220 007c0dd8512462818b97d13239292c99 349 PANTHER PTHR35564:SF1 28 345 3.9E-91 T 14-09-2016 PAJ_RS00780 0952ff8111e79bcfcc159f9302a80043 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 126 7.6E-19 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PAJ_RS00780 0952ff8111e79bcfcc159f9302a80043 129 SUPERFAMILY SSF54593 3 128 5.64E-30 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS00780 0952ff8111e79bcfcc159f9302a80043 129 Gene3D G3DSA:3.10.180.10 3 128 1.1E-33 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS00780 0952ff8111e79bcfcc159f9302a80043 129 PANTHER PTHR21366 3 128 3.5E-28 T 14-09-2016 PAJ_RS17380 e138e0bb67cef5f5ee8054095c2b4b46 205 Pfam PF03458 UPF0126 domain 5 78 1.7E-19 T 14-09-2016 IPR005115 Uncharacterised domain UPF0126 PAJ_RS17380 e138e0bb67cef5f5ee8054095c2b4b46 205 Pfam PF03458 UPF0126 domain 91 163 5.1E-21 T 14-09-2016 IPR005115 Uncharacterised domain UPF0126 PAJ_RS17380 e138e0bb67cef5f5ee8054095c2b4b46 205 PANTHER PTHR30506:SF2 1 200 1.2E-126 T 14-09-2016 PAJ_RS17380 e138e0bb67cef5f5ee8054095c2b4b46 205 PANTHER PTHR30506 1 200 1.2E-126 T 14-09-2016 PAJ_RS08585 24abe94bc8942e77e957da331bfd2cc7 117 SUPERFAMILY SSF47413 52 101 1.05E-8 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS08585 24abe94bc8942e77e957da331bfd2cc7 117 Gene3D G3DSA:1.10.260.40 55 107 3.1E-10 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS08585 24abe94bc8942e77e957da331bfd2cc7 117 Pfam PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA 32 110 2.6E-8 T 14-09-2016 IPR032758 Antitoxin MqsA/igA-2 PAJ_RS07590 25daf9073513582c979c68fcfb8ec5b6 71 ProDom PD052686 LIPOPROTEIN INDUCIBLE OSMOTICALLY B PRECURSOR SIGNAL MEMBRANE PALMITATE TRANSMEMBRANE SURFACE 22 70 2.0E-4 T 14-09-2016 PAJ_RS07590 25daf9073513582c979c68fcfb8ec5b6 71 Pfam PF05433 Glycine zipper 2TM domain 34 70 1.3E-7 T 14-09-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 PAJ_RS14045 3c407a011c1e674473945409043ca14d 273 PANTHER PTHR12112:SF17 1 268 4.4E-48 T 14-09-2016 PAJ_RS14045 3c407a011c1e674473945409043ca14d 273 Pfam PF02833 DHHA2 domain 152 263 1.8E-15 T 14-09-2016 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 PAJ_RS14045 3c407a011c1e674473945409043ca14d 273 SUPERFAMILY SSF64182 2 265 2.35E-43 T 14-09-2016 PAJ_RS14045 3c407a011c1e674473945409043ca14d 273 SMART SM01131 150 266 3.7E-27 T 14-09-2016 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 PAJ_RS14045 3c407a011c1e674473945409043ca14d 273 PANTHER PTHR12112 1 268 4.4E-48 T 14-09-2016 PAJ_RS14045 3c407a011c1e674473945409043ca14d 273 Gene3D G3DSA:3.90.1640.10 3 155 3.8E-30 T 14-09-2016 PAJ_RS05490 b3c45e36dd18051a5d4ab833d2e2cbd6 207 PANTHER PTHR30634:SF11 1 207 4.5E-57 T 14-09-2016 PAJ_RS05490 b3c45e36dd18051a5d4ab833d2e2cbd6 207 Pfam PF03550 Outer membrane lipoprotein LolB 51 204 6.2E-46 T 14-09-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 PAJ_RS05490 b3c45e36dd18051a5d4ab833d2e2cbd6 207 PANTHER PTHR30634 1 207 4.5E-57 T 14-09-2016 PAJ_RS05490 b3c45e36dd18051a5d4ab833d2e2cbd6 207 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 6 206 28.032 T 14-09-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 PAJ_RS05490 b3c45e36dd18051a5d4ab833d2e2cbd6 207 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 8 205 1.3E-72 T 14-09-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 PAJ_RS05490 b3c45e36dd18051a5d4ab833d2e2cbd6 207 SUPERFAMILY SSF89392 35 206 2.94E-51 T 14-09-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX PAJ_RS05490 b3c45e36dd18051a5d4ab833d2e2cbd6 207 Gene3D G3DSA:2.50.20.10 15 207 8.0E-66 T 14-09-2016 PAJ_RS10755 d343f478dd2f60de6672a9daea501e6c 238 PANTHER PTHR30450 1 237 2.1E-182 T 14-09-2016 PAJ_RS10755 d343f478dd2f60de6672a9daea501e6c 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 227 1.2E-14 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10755 d343f478dd2f60de6672a9daea501e6c 238 SUPERFAMILY SSF161098 17 220 9.68E-35 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS10755 d343f478dd2f60de6672a9daea501e6c 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 122 3.7E-13 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS10755 d343f478dd2f60de6672a9daea501e6c 238 PANTHER PTHR30450:SF5 1 237 2.1E-182 T 14-09-2016 PAJ_RS10755 d343f478dd2f60de6672a9daea501e6c 238 Gene3D G3DSA:1.10.3720.10 20 228 4.3E-34 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16655 568c206eadb4f4606f4e047dcbedde2f 447 Pfam PF00999 Sodium/hydrogen exchanger family 317 435 6.7E-9 T 14-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PAJ_RS16655 568c206eadb4f4606f4e047dcbedde2f 447 Pfam PF00999 Sodium/hydrogen exchanger family 13 266 3.9E-28 T 14-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PAJ_RS16655 568c206eadb4f4606f4e047dcbedde2f 447 PANTHER PTHR32507 1 269 8.5E-97 T 14-09-2016 PAJ_RS16655 568c206eadb4f4606f4e047dcbedde2f 447 PANTHER PTHR32507 312 446 8.5E-97 T 14-09-2016 PAJ_RS16655 568c206eadb4f4606f4e047dcbedde2f 447 PANTHER PTHR32507:SF12 312 446 8.5E-97 T 14-09-2016 PAJ_RS16655 568c206eadb4f4606f4e047dcbedde2f 447 PANTHER PTHR32507:SF12 1 269 8.5E-97 T 14-09-2016 PAJ_RS16465 98e1bf5a707fe86d3a4f3ad08029bdd0 394 PANTHER PTHR30387:SF2 1 394 1.2E-165 T 14-09-2016 PAJ_RS16465 98e1bf5a707fe86d3a4f3ad08029bdd0 394 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 393 8.4E-201 T 14-09-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 PAJ_RS16465 98e1bf5a707fe86d3a4f3ad08029bdd0 394 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 394 214.107 T 14-09-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 PAJ_RS16465 98e1bf5a707fe86d3a4f3ad08029bdd0 394 PIRSF PIRSF016049 1 393 2.2E-178 T 14-09-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 PAJ_RS16465 98e1bf5a707fe86d3a4f3ad08029bdd0 394 SUPERFAMILY SSF51658 1 133 6.28E-79 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS16465 98e1bf5a707fe86d3a4f3ad08029bdd0 394 SUPERFAMILY SSF51658 163 383 6.28E-79 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS16465 98e1bf5a707fe86d3a4f3ad08029bdd0 394 Gene3D G3DSA:3.20.20.150 1 391 2.0E-150 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS16465 98e1bf5a707fe86d3a4f3ad08029bdd0 394 PANTHER PTHR30387 1 394 1.2E-165 T 14-09-2016 PAJ_RS16465 98e1bf5a707fe86d3a4f3ad08029bdd0 394 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 388 3.3E-147 T 14-09-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 PAJ_RS03235 306e9baf280265cca3c3bf6a680376a9 243 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 223 2.6E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03235 306e9baf280265cca3c3bf6a680376a9 243 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 117 8.7E-20 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS03235 306e9baf280265cca3c3bf6a680376a9 243 SUPERFAMILY SSF161098 16 208 7.85E-35 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03235 306e9baf280265cca3c3bf6a680376a9 243 PANTHER PTHR30614 1 228 1.0E-70 T 14-09-2016 PAJ_RS03235 306e9baf280265cca3c3bf6a680376a9 243 Gene3D G3DSA:1.10.3720.10 16 224 1.4E-36 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS15135 240a35b9cbddc26e759f7614be31408a 258 TIGRFAM TIGR03580 EF_0832: conserved hypothetical protein EF_0832/AHA_3913 2 258 9.5E-155 T 14-09-2016 IPR020042 Protein of unknown function DUF4311 PAJ_RS15135 240a35b9cbddc26e759f7614be31408a 258 Pfam PF14188 Domain of unknown function (DUF4311) 25 237 2.7E-123 T 14-09-2016 IPR020042 Protein of unknown function DUF4311 PAJ_RS03825 a4748636f80a70107aa2e46e460eb864 180 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 25 155 6.0E-59 T 14-09-2016 IPR009390 Macrodomain Ter protein, MatP GO:0043565 PAJ_RS03825 a4748636f80a70107aa2e46e460eb864 180 Pfam PF06303 Organiser of macrodomain of Terminus of chromosome 25 171 2.7E-73 T 14-09-2016 IPR009390 Macrodomain Ter protein, MatP GO:0043565 PAJ_RS03825 a4748636f80a70107aa2e46e460eb864 180 Hamap MF_01073 Macrodomain Ter protein [matP]. 25 172 29.718 T 14-09-2016 IPR009390 Macrodomain Ter protein, MatP GO:0043565 PAJ_RS06530 18c3536fdec34080f3b5b9b5c76505fd 185 Gene3D G3DSA:3.40.50.850 8 179 1.0E-46 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS06530 18c3536fdec34080f3b5b9b5c76505fd 185 Pfam PF00857 Isochorismatase family 10 171 9.5E-40 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS06530 18c3536fdec34080f3b5b9b5c76505fd 185 SUPERFAMILY SSF52499 8 182 3.53E-46 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PAJ_RS06530 18c3536fdec34080f3b5b9b5c76505fd 185 PANTHER PTHR11080:SF37 9 185 1.6E-45 T 14-09-2016 PAJ_RS06530 18c3536fdec34080f3b5b9b5c76505fd 185 PANTHER PTHR11080 9 185 1.6E-45 T 14-09-2016 PAJ_RS09565 74f8e52d43c71b198f37739c05cab47a 49 SUPERFAMILY SSF54292 1 49 7.79E-17 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PAJ_RS09565 74f8e52d43c71b198f37739c05cab47a 49 Gene3D G3DSA:3.10.20.30 1 48 1.3E-17 T 14-09-2016 IPR012675 Beta-grasp domain PAJ_RS09565 74f8e52d43c71b198f37739c05cab47a 49 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 2 42 9.8E-8 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PAJ_RS07080 94add2dfb3c2b0cd57a9f19e3a5c5c93 187 SUPERFAMILY SSF82153 40 186 4.19E-38 T 14-09-2016 IPR000782 FAS1 domain PAJ_RS07080 94add2dfb3c2b0cd57a9f19e3a5c5c93 187 SMART SM00554 75 187 8.4E-23 T 14-09-2016 IPR000782 FAS1 domain PAJ_RS07080 94add2dfb3c2b0cd57a9f19e3a5c5c93 187 Gene3D G3DSA:2.30.180.10 39 186 2.5E-37 T 14-09-2016 IPR000782 FAS1 domain PAJ_RS07080 94add2dfb3c2b0cd57a9f19e3a5c5c93 187 Pfam PF02469 Fasciclin domain 51 186 2.8E-31 T 14-09-2016 IPR000782 FAS1 domain PAJ_RS07080 94add2dfb3c2b0cd57a9f19e3a5c5c93 187 PANTHER PTHR10900 22 186 3.8E-40 T 14-09-2016 PAJ_RS16450 1d9dae9e58998a56550046fe16a70f36 459 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 16 438 9.5E-107 T 14-09-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PAJ_RS16450 1d9dae9e58998a56550046fe16a70f36 459 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 356 376 - T 14-09-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PAJ_RS16450 1d9dae9e58998a56550046fe16a70f36 459 PANTHER PTHR11119 1 440 5.5E-155 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS16450 1d9dae9e58998a56550046fe16a70f36 459 TIGRFAM TIGR03173 pbuX: xanthine permease 26 439 6.7E-131 T 14-09-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 PAJ_RS16450 1d9dae9e58998a56550046fe16a70f36 459 Pfam PF00860 Permease family 21 407 3.7E-85 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PAJ_RS16450 1d9dae9e58998a56550046fe16a70f36 459 PANTHER PTHR11119:SF44 1 440 5.5E-155 T 14-09-2016 PAJ_RS03775 1c4033aa4c453c1bf4945a3d438960bd 336 PIRSF PIRSF000164 13 336 4.8E-96 T 14-09-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Reactome: REACT_1698 PAJ_RS03775 1c4033aa4c453c1bf4945a3d438960bd 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 14-09-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 PAJ_RS03775 1c4033aa4c453c1bf4945a3d438960bd 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 7.4E-89 T 14-09-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 PAJ_RS03775 1c4033aa4c453c1bf4945a3d438960bd 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 3.1E-152 T 14-09-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS03775 1c4033aa4c453c1bf4945a3d438960bd 336 PANTHER PTHR11938 6 332 7.7E-98 T 14-09-2016 PAJ_RS03775 1c4033aa4c453c1bf4945a3d438960bd 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 50.982 T 14-09-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PAJ_RS03775 1c4033aa4c453c1bf4945a3d438960bd 336 SUPERFAMILY SSF51395 1 334 1.4E-102 T 14-09-2016 PAJ_RS03775 1c4033aa4c453c1bf4945a3d438960bd 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 14-09-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 PAJ_RS03775 1c4033aa4c453c1bf4945a3d438960bd 336 Gene3D G3DSA:3.20.20.70 1 335 1.0E-124 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS13895 8cfd2275f8568e132247baf8f33421ff 508 Pfam PF07916 TraG-like protein, N-terminal region 8 480 4.1E-76 T 14-09-2016 IPR012931 TraG-like, N-terminal PAJ_RS19880 760e250449d09817afb1e00e7c3f4253 111 Pfam PF03840 Preprotein translocase SecG subunit 5 72 3.5E-22 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PAJ_RS19880 760e250449d09817afb1e00e7c3f4253 111 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 74 1.6E-27 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PAJ_RS19880 760e250449d09817afb1e00e7c3f4253 111 PANTHER PTHR34182 2 110 2.2E-36 T 14-09-2016 PAJ_RS19880 760e250449d09817afb1e00e7c3f4253 111 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 1.2E-43 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PAJ_RS19880 760e250449d09817afb1e00e7c3f4253 111 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 1.2E-43 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PAJ_RS19880 760e250449d09817afb1e00e7c3f4253 111 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 1.2E-43 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PAJ_RS19880 760e250449d09817afb1e00e7c3f4253 111 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 1.2E-43 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PAJ_RS13910 90a94d7ca75145167cf8d0e4929067ce 295 SUPERFAMILY SSF56349 20 255 4.0E-11 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PAJ_RS13910 90a94d7ca75145167cf8d0e4929067ce 295 Gene3D G3DSA:1.10.150.130 8 83 2.5E-4 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal PAJ_RS13910 90a94d7ca75145167cf8d0e4929067ce 295 Pfam PF12834 Phage integrase, N-terminal 2 90 2.4E-36 T 14-09-2016 IPR024457 Putative integrase, N-terminal PAJ_RS13910 90a94d7ca75145167cf8d0e4929067ce 295 Pfam PF12835 Integrase 105 252 1.7E-60 T 14-09-2016 IPR024456 Integrase catalytic domain, putative PAJ_RS15145 834bf10e229351b81451ba0d1706d19a 118 TIGRFAM TIGR03577 EF_0830: conserved hypothetical protein EF_0830/AHA_3911 2 116 2.0E-67 T 14-09-2016 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 PAJ_RS15145 834bf10e229351b81451ba0d1706d19a 118 Gene3D G3DSA:3.40.1400.10 38 114 7.0E-4 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 PAJ_RS15145 834bf10e229351b81451ba0d1706d19a 118 Pfam PF14272 Glycine-rich SFCGS 2 115 8.4E-61 T 14-09-2016 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 PAJ_RS14740 555e868d3b309427aca3ea4c92358f91 116 PANTHER PTHR35862:SF2 5 114 4.6E-32 T 14-09-2016 PAJ_RS14740 555e868d3b309427aca3ea4c92358f91 116 Gene3D G3DSA:3.10.450.40 10 115 4.2E-37 T 14-09-2016 PAJ_RS14740 555e868d3b309427aca3ea4c92358f91 116 PANTHER PTHR35862 5 114 4.6E-32 T 14-09-2016 PAJ_RS14740 555e868d3b309427aca3ea4c92358f91 116 SUPERFAMILY SSF160719 19 115 5.89E-29 T 14-09-2016 PAJ_RS14740 555e868d3b309427aca3ea4c92358f91 116 Pfam PF04965 Gene 25-like lysozyme 20 103 9.6E-18 T 14-09-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD PAJ_RS15250 c3a08279fb75cf45766bdbeca920643d 493 Pfam PF14264 Glucosyl transferase GtrII 17 329 2.4E-41 T 14-09-2016 IPR025686 Glucosyl transferase II PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 46 447 1.8E-162 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 Gene3D G3DSA:3.40.710.10 227 454 5.0E-63 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 SUPERFAMILY SSF56601 23 470 1.84E-97 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 21 468 7.2E-159 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 PANTHER PTHR30023:SF0 23 473 4.5E-135 T 14-09-2016 PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 PANTHER PTHR30023 23 473 4.5E-135 T 14-09-2016 PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 58 77 3.0E-35 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 360 374 3.0E-35 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 345 359 3.0E-35 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 424 437 3.0E-35 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PAJ_RS19845 6355c2ed5ab48c6ffba60da83fdb80c4 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 286 308 3.0E-35 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 SUPERFAMILY SSF46689 177 224 1.49E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 SUPERFAMILY SSF46689 226 273 3.54E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 Gene3D G3DSA:1.10.10.60 228 273 3.4E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 PANTHER PTHR11019 20 280 3.1E-67 T 14-09-2016 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 PANTHER PTHR11019:SF108 20 280 3.1E-67 T 14-09-2016 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 Gene3D G3DSA:1.10.10.60 175 227 4.1E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 Pfam PF12833 Helix-turn-helix domain 196 273 1.5E-19 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 SUPERFAMILY SSF51215 20 157 1.31E-21 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 Pfam PF02311 AraC-like ligand binding domain 20 154 3.7E-23 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 Gene3D G3DSA:2.60.120.280 20 138 3.2E-16 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS04280 f1d9edccdce8321b2e875b3baf77edb2 281 SMART SM00342 190 272 6.0E-19 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 92 113 1.8E-28 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 238 256 1.8E-28 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 156 176 1.8E-28 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 16 33 1.8E-28 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 133 155 1.8E-28 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 195 212 1.8E-28 T 14-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 PANTHER PTHR10907 12 289 1.1E-75 T 14-09-2016 PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 PANTHER PTHR10907:SF47 12 289 1.1E-75 T 14-09-2016 PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 SUPERFAMILY SSF63829 7 289 5.4E-64 T 14-09-2016 PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 Gene3D G3DSA:2.120.10.30 4 291 1.1E-82 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like PAJ_RS11130 4e86fced126fb0086cc65b077fe66b14 291 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 15 256 4.3E-74 T 14-09-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region PAJ_RS16120 b54905d8b5ce5024fb1b39ea33efdc86 222 Gene3D G3DSA:3.40.50.1000 7 189 8.0E-25 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16120 b54905d8b5ce5024fb1b39ea33efdc86 222 PANTHER PTHR18901:SF7 1 217 4.3E-109 T 14-09-2016 PAJ_RS16120 b54905d8b5ce5024fb1b39ea33efdc86 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 134 150 2.1E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16120 b54905d8b5ce5024fb1b39ea33efdc86 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 152 172 2.1E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16120 b54905d8b5ce5024fb1b39ea33efdc86 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 8 19 2.1E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16120 b54905d8b5ce5024fb1b39ea33efdc86 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 103 116 2.1E-6 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16120 b54905d8b5ce5024fb1b39ea33efdc86 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 185 1.6E-6 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS16120 b54905d8b5ce5024fb1b39ea33efdc86 222 PANTHER PTHR18901 1 217 4.3E-109 T 14-09-2016 PAJ_RS16120 b54905d8b5ce5024fb1b39ea33efdc86 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 11 188 7.8E-14 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PAJ_RS16120 b54905d8b5ce5024fb1b39ea33efdc86 222 SUPERFAMILY SSF56784 3 215 6.1E-44 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS15470 e169a65a63ecc91d7c7226dd5b9ccd14 87 PANTHER PTHR34156 2 87 1.3E-44 T 14-09-2016 PAJ_RS15470 e169a65a63ecc91d7c7226dd5b9ccd14 87 PANTHER PTHR34156:SF5 2 87 1.3E-44 T 14-09-2016 PAJ_RS15470 e169a65a63ecc91d7c7226dd5b9ccd14 87 Pfam PF07338 Protein of unknown function (DUF1471) 34 87 1.2E-23 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS15470 e169a65a63ecc91d7c7226dd5b9ccd14 87 SUPERFAMILY SSF159871 3 87 7.32E-28 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS15470 e169a65a63ecc91d7c7226dd5b9ccd14 87 Gene3D G3DSA:3.30.1660.10 18 87 9.4E-29 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS03705 82eb9ef24c836b6bda4273bd2fe2b24c 182 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 182 4.6E-62 T 14-09-2016 IPR010275 Protein of unknown function DUF882 PAJ_RS03705 82eb9ef24c836b6bda4273bd2fe2b24c 182 PANTHER PTHR37425 1 182 1.0E-69 T 14-09-2016 PAJ_RS03705 82eb9ef24c836b6bda4273bd2fe2b24c 182 Gene3D G3DSA:3.30.1380.10 56 182 1.1E-30 T 14-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain PAJ_RS03705 82eb9ef24c836b6bda4273bd2fe2b24c 182 SUPERFAMILY SSF55166 66 182 4.97E-33 T 14-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain PAJ_RS11350 37e863c9bee0d313377d7cc3ab0739fe 293 PANTHER PTHR10314:SF100 3 293 6.4E-173 T 14-09-2016 PAJ_RS11350 37e863c9bee0d313377d7cc3ab0739fe 293 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 5 281 1.4E-71 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS11350 37e863c9bee0d313377d7cc3ab0739fe 293 PANTHER PTHR10314 3 293 6.4E-173 T 14-09-2016 PAJ_RS11350 37e863c9bee0d313377d7cc3ab0739fe 293 Gene3D G3DSA:3.40.50.1100 40 139 1.1E-38 T 14-09-2016 PAJ_RS11350 37e863c9bee0d313377d7cc3ab0739fe 293 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 30 48 - T 14-09-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 PAJ_RS11350 37e863c9bee0d313377d7cc3ab0739fe 293 Gene3D G3DSA:3.40.50.1100 146 292 1.4E-77 T 14-09-2016 PAJ_RS11350 37e863c9bee0d313377d7cc3ab0739fe 293 Gene3D G3DSA:3.40.50.1100 2 39 1.4E-77 T 14-09-2016 PAJ_RS11350 37e863c9bee0d313377d7cc3ab0739fe 293 TIGRFAM TIGR01136 cysKM: cysteine synthase 5 292 1.0E-119 T 14-09-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 PAJ_RS11350 37e863c9bee0d313377d7cc3ab0739fe 293 TIGRFAM TIGR01138 cysM: cysteine synthase B 3 292 1.2E-147 T 14-09-2016 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 PAJ_RS11350 37e863c9bee0d313377d7cc3ab0739fe 293 SUPERFAMILY SSF53686 4 289 8.25E-92 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PAJ_RS11610 7bf2639c94b93a14f3afbe6b601bbc1f 271 Gene3D G3DSA:1.10.3720.10 9 261 4.0E-42 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11610 7bf2639c94b93a14f3afbe6b601bbc1f 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 261 5.6E-14 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11610 7bf2639c94b93a14f3afbe6b601bbc1f 271 PANTHER PTHR30193 1 270 9.2E-38 T 14-09-2016 PAJ_RS11610 7bf2639c94b93a14f3afbe6b601bbc1f 271 SUPERFAMILY SSF161098 3 251 6.07E-44 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 Pfam PF01266 FAD dependent oxidoreductase 19 413 9.8E-64 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 PANTHER PTHR13847 308 433 4.7E-61 T 14-09-2016 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 PANTHER PTHR13847 1 261 4.7E-61 T 14-09-2016 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 Gene3D G3DSA:3.50.50.60 374 434 1.6E-64 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 Gene3D G3DSA:3.50.50.60 152 230 1.6E-64 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 Gene3D G3DSA:3.50.50.60 9 94 1.6E-64 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 SUPERFAMILY SSF51905 18 231 1.17E-58 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 SUPERFAMILY SSF51905 374 433 1.17E-58 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 Gene3D G3DSA:3.30.9.10 100 151 3.9E-10 T 14-09-2016 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 Gene3D G3DSA:3.30.9.10 231 264 3.9E-10 T 14-09-2016 PAJ_RS07055 6081644eb70d91fb4b423c9588bb4c34 443 Gene3D G3DSA:3.30.9.10 304 371 3.9E-10 T 14-09-2016 PAJ_RS11335 ccde18111fe87355160de6bf4b444023 166 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 82 94 - T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS11335 ccde18111fe87355160de6bf4b444023 166 SUPERFAMILY SSF51261 14 163 2.96E-56 T 14-09-2016 IPR011055 Duplicated hybrid motif PAJ_RS11335 ccde18111fe87355160de6bf4b444023 166 PANTHER PTHR30175 6 115 2.0E-53 T 14-09-2016 PAJ_RS11335 ccde18111fe87355160de6bf4b444023 166 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 20 140 2.9E-51 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS11335 ccde18111fe87355160de6bf4b444023 166 Gene3D G3DSA:2.70.70.10 12 163 1.6E-60 T 14-09-2016 PAJ_RS11335 ccde18111fe87355160de6bf4b444023 166 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 19 143 5.5E-50 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS08965 2b3a70ebac4293acb4996d735082adfa 262 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 9 221 2.9E-23 T 14-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 PAJ_RS08965 2b3a70ebac4293acb4996d735082adfa 262 PANTHER PTHR10000:SF19 1 256 1.8E-59 T 14-09-2016 PAJ_RS08965 2b3a70ebac4293acb4996d735082adfa 262 Gene3D G3DSA:3.40.50.1000 173 255 9.8E-38 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS08965 2b3a70ebac4293acb4996d735082adfa 262 Gene3D G3DSA:3.40.50.1000 9 89 9.8E-38 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS08965 2b3a70ebac4293acb4996d735082adfa 262 Pfam PF08282 haloacid dehalogenase-like hydrolase 10 223 5.7E-18 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS08965 2b3a70ebac4293acb4996d735082adfa 262 SUPERFAMILY SSF56784 8 223 5.96E-44 T 14-09-2016 IPR023214 HAD-like domain PAJ_RS08965 2b3a70ebac4293acb4996d735082adfa 262 PANTHER PTHR10000 1 256 1.8E-59 T 14-09-2016 PAJ_RS08965 2b3a70ebac4293acb4996d735082adfa 262 Gene3D G3DSA:3.30.980.20 91 172 2.9E-31 T 14-09-2016 PAJ_RS08965 2b3a70ebac4293acb4996d735082adfa 262 TIGRFAM TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family 9 259 5.7E-74 T 14-09-2016 IPR006381 HAD-superfamily hydrolase, superfamily IIB, MPGP GO:0005737|GO:0050531|GO:0051479 KEGG: 00051+3.1.3.70|MetaCyc: PWY-5656 PAJ_RS14940 eb67636eb3968b6ed7c23ee8cf391413 235 Gene3D G3DSA:3.60.140.10 25 228 1.7E-46 T 14-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase PAJ_RS14940 eb67636eb3968b6ed7c23ee8cf391413 235 PANTHER PTHR30616 27 234 6.8E-37 T 14-09-2016 PAJ_RS14940 eb67636eb3968b6ed7c23ee8cf391413 235 SUPERFAMILY SSF64438 25 229 3.66E-39 T 14-09-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic PAJ_RS14940 eb67636eb3968b6ed7c23ee8cf391413 235 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 29 219 9.9E-39 T 14-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase PAJ_RS02465 ef149038b846b4781d3e4c8e3788a29a 343 Gene3D G3DSA:3.40.50.300 1 140 1.2E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02465 ef149038b846b4781d3e4c8e3788a29a 343 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 18 332 1.6E-100 T 14-09-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 PAJ_RS02465 ef149038b846b4781d3e4c8e3788a29a 343 SUPERFAMILY SSF52540 1 210 4.19E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02465 ef149038b846b4781d3e4c8e3788a29a 343 Pfam PF06144 DNA polymerase III, delta subunit 21 190 1.6E-44 T 14-09-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 PAJ_RS02465 ef149038b846b4781d3e4c8e3788a29a 343 Gene3D G3DSA:1.20.272.20 223 336 4.1E-46 T 14-09-2016 PAJ_RS02465 ef149038b846b4781d3e4c8e3788a29a 343 SUPERFAMILY SSF48019 212 332 8.25E-30 T 14-09-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 PAJ_RS02465 ef149038b846b4781d3e4c8e3788a29a 343 Gene3D G3DSA:1.10.8.60 143 222 9.7E-36 T 14-09-2016 PAJ_RS02465 ef149038b846b4781d3e4c8e3788a29a 343 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 214 336 3.3E-51 T 14-09-2016 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS02465 ef149038b846b4781d3e4c8e3788a29a 343 PANTHER PTHR34388 1 342 9.3E-86 T 14-09-2016 PAJ_RS06600 3098f2bac0f5bbc7fab5064d06c54e25 455 PANTHER PTHR33843 1 453 8.7E-169 T 14-09-2016 PAJ_RS06600 3098f2bac0f5bbc7fab5064d06c54e25 455 PANTHER PTHR33843:SF4 1 453 8.7E-169 T 14-09-2016 PAJ_RS06600 3098f2bac0f5bbc7fab5064d06c54e25 455 Pfam PF03611 PTS system sugar-specific permease component 12 406 1.0E-122 T 14-09-2016 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 PAJ_RS06285 98d2706b2bcfd7cfa1e3a52e8ff0a90e 234 PANTHER PTHR30251 1 223 2.8E-12 T 14-09-2016 PAJ_RS06285 98d2706b2bcfd7cfa1e3a52e8ff0a90e 234 SUPERFAMILY SSF49584 147 226 1.83E-5 T 14-09-2016 IPR016148 Pili assembly chaperone, C-terminal PAJ_RS06285 98d2706b2bcfd7cfa1e3a52e8ff0a90e 234 SUPERFAMILY SSF49354 25 138 1.67E-14 T 14-09-2016 IPR008962 PapD-like PAJ_RS06285 98d2706b2bcfd7cfa1e3a52e8ff0a90e 234 Gene3D G3DSA:2.60.40.360 29 138 1.0E-10 T 14-09-2016 IPR008962 PapD-like PAJ_RS06285 98d2706b2bcfd7cfa1e3a52e8ff0a90e 234 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 31 139 8.1E-12 T 14-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PAJ_RS12320 4142873b8f17a91b9f166a97c4599b07 132 Gene3D G3DSA:1.10.10.10 8 114 7.6E-40 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12320 4142873b8f17a91b9f166a97c4599b07 132 Pfam PF01638 HxlR-like helix-turn-helix 25 110 9.8E-30 T 14-09-2016 IPR002577 Helix-turn-helix, HxlR type PAJ_RS12320 4142873b8f17a91b9f166a97c4599b07 132 SUPERFAMILY SSF46785 12 116 2.68E-32 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12320 4142873b8f17a91b9f166a97c4599b07 132 PANTHER PTHR33204 8 109 8.9E-43 T 14-09-2016 PAJ_RS12320 4142873b8f17a91b9f166a97c4599b07 132 PANTHER PTHR33204:SF5 8 109 8.9E-43 T 14-09-2016 PAJ_RS15380 5c98c27703b02dadd252457d10dfb4e7 410 Pfam PF01145 SPFH domain / Band 7 family 92 264 1.3E-30 T 14-09-2016 IPR001107 Band 7 domain PAJ_RS15380 5c98c27703b02dadd252457d10dfb4e7 410 PANTHER PTHR10264:SF51 13 384 8.6E-189 T 14-09-2016 IPR010201 HflK GO:0016021 PAJ_RS15380 5c98c27703b02dadd252457d10dfb4e7 410 TIGRFAM TIGR01933 hflK: HflK protein 90 349 7.3E-123 T 14-09-2016 IPR010201 HflK GO:0016021 PAJ_RS15380 5c98c27703b02dadd252457d10dfb4e7 410 SUPERFAMILY SSF117892 121 254 3.01E-20 T 14-09-2016 IPR001107 Band 7 domain PAJ_RS15380 5c98c27703b02dadd252457d10dfb4e7 410 Pfam PF12221 Bacterial membrane protein N terminal 1 57 1.7E-14 T 14-09-2016 IPR020980 Menbrane protein HflK, N-terminal PAJ_RS15380 5c98c27703b02dadd252457d10dfb4e7 410 SMART SM00244 88 248 2.0E-42 T 14-09-2016 IPR001107 Band 7 domain PAJ_RS15380 5c98c27703b02dadd252457d10dfb4e7 410 PRINTS PR00721 Stomatin signature 95 117 4.7E-7 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS15380 5c98c27703b02dadd252457d10dfb4e7 410 PRINTS PR00721 Stomatin signature 142 163 4.7E-7 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS15380 5c98c27703b02dadd252457d10dfb4e7 410 PRINTS PR00721 Stomatin signature 177 194 4.7E-7 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS15380 5c98c27703b02dadd252457d10dfb4e7 410 PANTHER PTHR10264 13 384 8.6E-189 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS01130 495cbf17c0e09f951033837b0f864a40 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 325 5.5E-39 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS01130 495cbf17c0e09f951033837b0f864a40 333 PANTHER PTHR32196 13 333 1.6E-105 T 14-09-2016 PAJ_RS01130 495cbf17c0e09f951033837b0f864a40 333 PANTHER PTHR32196:SF21 13 333 1.6E-105 T 14-09-2016 PAJ_RS12650 09a1ccbdb0a6ffbf5aa0b36f3c995f1f 110 SUPERFAMILY SSF69754 3 103 7.46E-34 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PAJ_RS12650 09a1ccbdb0a6ffbf5aa0b36f3c995f1f 110 Gene3D G3DSA:3.30.160.100 3 91 2.2E-33 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PAJ_RS12650 09a1ccbdb0a6ffbf5aa0b36f3c995f1f 110 PANTHER PTHR33231 1 103 2.5E-62 T 14-09-2016 PAJ_RS12650 09a1ccbdb0a6ffbf5aa0b36f3c995f1f 110 PANTHER PTHR33231:SF3 1 103 2.5E-62 T 14-09-2016 PAJ_RS12650 09a1ccbdb0a6ffbf5aa0b36f3c995f1f 110 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 2.8E-23 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PAJ_RS12650 09a1ccbdb0a6ffbf5aa0b36f3c995f1f 110 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 97 6.0E-35 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PAJ_RS19340 7de0d7ff0e745f777c08215004cf0ad5 411 SUPERFAMILY SSF51905 122 265 1.42E-21 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19340 7de0d7ff0e745f777c08215004cf0ad5 411 PANTHER PTHR10632 12 404 4.9E-171 T 14-09-2016 PAJ_RS19340 7de0d7ff0e745f777c08215004cf0ad5 411 PANTHER PTHR10632:SF2 12 404 4.9E-171 T 14-09-2016 PAJ_RS19340 7de0d7ff0e745f777c08215004cf0ad5 411 Gene3D G3DSA:3.50.50.60 266 334 3.8E-49 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19340 7de0d7ff0e745f777c08215004cf0ad5 411 Gene3D G3DSA:3.50.50.60 10 123 3.8E-49 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19340 7de0d7ff0e745f777c08215004cf0ad5 411 SUPERFAMILY SSF51905 11 115 8.12E-25 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19340 7de0d7ff0e745f777c08215004cf0ad5 411 SUPERFAMILY SSF51905 260 331 8.12E-25 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS19340 7de0d7ff0e745f777c08215004cf0ad5 411 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 128 1.2E-8 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 Pfam PF12833 Helix-turn-helix domain 185 264 3.4E-17 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 Gene3D G3DSA:1.10.10.60 216 265 3.7E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 PANTHER PTHR11019:SF130 26 270 3.1E-81 T 14-09-2016 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 Gene3D G3DSA:1.10.10.60 169 215 0.001 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 SUPERFAMILY SSF51215 15 146 3.4E-15 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 SMART SM00342 179 262 4.8E-17 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 216 258 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 PANTHER PTHR11019 26 270 3.1E-81 T 14-09-2016 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 Gene3D G3DSA:2.60.120.280 25 144 1.1E-12 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 SUPERFAMILY SSF46689 216 266 3.09E-12 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 Pfam PF02311 AraC-like ligand binding domain 29 140 7.4E-8 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 246 262 6.1E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS11590 b9cc30247afa0ab04e9858c11f3b4c95 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 231 246 6.1E-6 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 PANTHER PTHR11472:SF37 13 621 4.2E-232 T 14-09-2016 PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 SMART SM00487 16 337 6.0E-5 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 Pfam PF00270 DEAD/DEAH box helicase 29 81 1.7E-4 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 PANTHER PTHR11472 13 621 4.2E-232 T 14-09-2016 PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 Gene3D G3DSA:3.40.50.300 451 597 5.2E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 SUPERFAMILY SSF52540 573 597 8.09E-11 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 SUPERFAMILY SSF52540 41 88 8.09E-11 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 SUPERFAMILY SSF52540 477 542 8.09E-11 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 SUPERFAMILY SSF52540 15 232 2.33E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 Pfam PF06733 DEAD_2 175 247 6.3E-5 T 14-09-2016 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 Pfam PF13307 Helicase C-terminal domain 460 616 3.2E-34 T 14-09-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 SMART SM00491 474 603 5.7E-51 T 14-09-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 Gene3D G3DSA:3.40.50.300 19 116 3.0E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 Gene3D G3DSA:3.40.50.300 390 399 3.0E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08060 e18731065a4bcad65fb83a3aa2f921c4 636 Gene3D G3DSA:3.40.50.300 190 253 3.0E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 5.8E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 5.8E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 SMART SM00866 107 243 1.2E-32 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 Gene3D G3DSA:1.10.10.10 18 89 1.8E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 PANTHER PTHR11751 23 89 7.0E-37 T 14-09-2016 PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 PANTHER PTHR11751 135 159 7.0E-37 T 14-09-2016 PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 Gene3D G3DSA:3.40.1410.10 93 244 4.1E-44 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 PANTHER PTHR11751:SF433 23 89 7.0E-37 T 14-09-2016 PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 PANTHER PTHR11751:SF433 135 159 7.0E-37 T 14-09-2016 PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 87 1.7E-15 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 Pfam PF07702 UTRA domain 108 242 3.0E-36 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 SMART SM00345 28 87 3.5E-11 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 SUPERFAMILY SSF64288 75 246 4.0E-41 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PAJ_RS04825 613884575afb2a8fdf888b6a03542042 247 SUPERFAMILY SSF46785 17 89 8.85E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06710 243a1d9043d239e544b7b1ca0095cf5c 222 SUPERFAMILY SSF52540 6 211 1.11E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06710 243a1d9043d239e544b7b1ca0095cf5c 222 Gene3D G3DSA:3.40.50.300 9 210 2.6E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06710 243a1d9043d239e544b7b1ca0095cf5c 222 SMART SM00382 32 220 8.2E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS06710 243a1d9043d239e544b7b1ca0095cf5c 222 Pfam PF00005 ABC transporter 25 166 5.0E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS06710 243a1d9043d239e544b7b1ca0095cf5c 222 PANTHER PTHR24220:SF410 9 210 2.8E-65 T 14-09-2016 PAJ_RS06710 243a1d9043d239e544b7b1ca0095cf5c 222 PANTHER PTHR24220 9 210 2.8E-65 T 14-09-2016 PAJ_RS19820 ff1366b1c8e6f24bff0c71b3f8ce9d76 323 Pfam PF00348 Polyprenyl synthetase 31 263 8.5E-74 T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 PAJ_RS19820 ff1366b1c8e6f24bff0c71b3f8ce9d76 323 PANTHER PTHR12001:SF47 8 323 2.4E-125 T 14-09-2016 PAJ_RS19820 ff1366b1c8e6f24bff0c71b3f8ce9d76 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 PAJ_RS19820 ff1366b1c8e6f24bff0c71b3f8ce9d76 323 Gene3D G3DSA:1.10.600.10 3 322 6.4E-102 T 14-09-2016 IPR008949 Isoprenoid synthase domain PAJ_RS19820 ff1366b1c8e6f24bff0c71b3f8ce9d76 323 PANTHER PTHR12001 8 323 2.4E-125 T 14-09-2016 IPR017446 Polyprenyl synthetase-related PAJ_RS19820 ff1366b1c8e6f24bff0c71b3f8ce9d76 323 SUPERFAMILY SSF48576 5 322 1.02E-99 T 14-09-2016 IPR008949 Isoprenoid synthase domain PAJ_RS19820 ff1366b1c8e6f24bff0c71b3f8ce9d76 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 PAJ_RS10120 d9f32c7156ba051ba1c4c88b77184b56 130 Pfam PF03788 LrgA family 23 113 2.2E-27 T 14-09-2016 IPR005538 LrgA/CidA family GO:0016021 PAJ_RS10120 d9f32c7156ba051ba1c4c88b77184b56 130 PANTHER PTHR33931:SF2 1 121 3.4E-44 T 14-09-2016 PAJ_RS10120 d9f32c7156ba051ba1c4c88b77184b56 130 Hamap MF_01144 UPF0299 membrane protein YohJ [yohJ]. 4 123 22.138 T 14-09-2016 IPR022957 Uncharacterised protein family UPF0299 PAJ_RS10120 d9f32c7156ba051ba1c4c88b77184b56 130 PANTHER PTHR33931 1 121 3.4E-44 T 14-09-2016 PAJ_RS09925 56e770187dce26f9c4264cf4752fd62a 736 Gene3D G3DSA:2.160.20.10 240 515 9.5E-8 T 14-09-2016 IPR012334 Pectin lyase fold PAJ_RS09925 56e770187dce26f9c4264cf4752fd62a 736 SUPERFAMILY SSF51327 47 147 1.44E-22 T 14-09-2016 IPR009093 Bacteriophage P22 tailspike, N-terminal GO:0009405 PAJ_RS09925 56e770187dce26f9c4264cf4752fd62a 736 Gene3D G3DSA:2.170.14.10 47 148 5.2E-40 T 14-09-2016 IPR009093 Bacteriophage P22 tailspike, N-terminal GO:0009405 PAJ_RS09925 56e770187dce26f9c4264cf4752fd62a 736 Pfam PF09008 Head binding 49 146 4.6E-15 T 14-09-2016 IPR009093 Bacteriophage P22 tailspike, N-terminal GO:0009405 PAJ_RS09925 56e770187dce26f9c4264cf4752fd62a 736 SUPERFAMILY SSF51126 237 546 1.4E-10 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS12870 244889f594482cfa611c011707309778 303 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 258 1.2E-59 T 14-09-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 PAJ_RS12870 244889f594482cfa611c011707309778 303 SUPERFAMILY SSF52402 6 210 2.79E-71 T 14-09-2016 PAJ_RS12870 244889f594482cfa611c011707309778 303 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 303 56.483 T 14-09-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 PAJ_RS12870 244889f594482cfa611c011707309778 303 PIRSF PIRSF002936 1 303 3.9E-149 T 14-09-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 PAJ_RS12870 244889f594482cfa611c011707309778 303 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 303 1.2E-160 T 14-09-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 PAJ_RS12870 244889f594482cfa611c011707309778 303 Gene3D G3DSA:3.40.50.620 245 254 3.0E-58 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS12870 244889f594482cfa611c011707309778 303 Gene3D G3DSA:3.40.50.620 2 211 3.0E-58 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS12870 244889f594482cfa611c011707309778 303 PANTHER PTHR23293 1 159 1.5E-92 T 14-09-2016 PAJ_RS12870 244889f594482cfa611c011707309778 303 PANTHER PTHR23293 246 303 1.5E-92 T 14-09-2016 PAJ_RS12870 244889f594482cfa611c011707309778 303 PANTHER PTHR23293 179 212 1.5E-92 T 14-09-2016 PAJ_RS14370 ef4dd6e3521c1d057d659c295b765d0b 498 Gene3D G3DSA:3.30.1360.60 421 497 5.4E-22 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS14370 ef4dd6e3521c1d057d659c295b765d0b 498 Pfam PF00367 phosphotransferase system, EIIB 426 458 1.4E-10 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS14370 ef4dd6e3521c1d057d659c295b765d0b 498 SUPERFAMILY SSF55604 423 496 2.75E-17 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS14370 ef4dd6e3521c1d057d659c295b765d0b 498 Pfam PF02378 Phosphotransferase system, EIIC 19 336 5.5E-76 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS14370 ef4dd6e3521c1d057d659c295b765d0b 498 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 436 453 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 PAJ_RS14370 ef4dd6e3521c1d057d659c295b765d0b 498 PANTHER PTHR30009:SF2 11 486 1.7E-182 T 14-09-2016 PAJ_RS14370 ef4dd6e3521c1d057d659c295b765d0b 498 PANTHER PTHR30009 11 486 1.7E-182 T 14-09-2016 PAJ_RS14370 ef4dd6e3521c1d057d659c295b765d0b 498 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 399 483 1.9E-15 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 PAJ_RS18930 96b602bf36ac2c3df95fca8a8803097a 173 SUPERFAMILY SSF46785 12 145 5.2E-30 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18930 96b602bf36ac2c3df95fca8a8803097a 173 Gene3D G3DSA:1.10.10.10 11 84 2.3E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS18930 96b602bf36ac2c3df95fca8a8803097a 173 PANTHER PTHR33202 7 169 1.2E-75 T 14-09-2016 PAJ_RS18930 96b602bf36ac2c3df95fca8a8803097a 173 Pfam PF01475 Ferric uptake regulator family 20 137 5.5E-13 T 14-09-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 PAJ_RS18930 96b602bf36ac2c3df95fca8a8803097a 173 PANTHER PTHR33202:SF6 7 169 1.2E-75 T 14-09-2016 PAJ_RS19970 6c9c1aa9ff0ad61e6f12e732ead150db 142 SUPERFAMILY SSF50475 3 136 4.21E-16 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PAJ_RS19970 6c9c1aa9ff0ad61e6f12e732ead150db 142 Hamap MF_00764 UPF0306 protein YhbP [yhbP]. 3 140 33.361 T 14-09-2016 IPR011194 Uncharacterised protein family UPF0306 PAJ_RS19970 6c9c1aa9ff0ad61e6f12e732ead150db 142 Gene3D G3DSA:2.30.110.10 6 125 3.2E-6 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PAJ_RS19970 6c9c1aa9ff0ad61e6f12e732ead150db 142 PIRSF PIRSF009554 2 142 2.5E-57 T 14-09-2016 IPR011194 Uncharacterised protein family UPF0306 PAJ_RS11650 739ff642cf4bccae2879e7e5c4dbe485 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 44.279 T 14-09-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 PAJ_RS11650 739ff642cf4bccae2879e7e5c4dbe485 208 Gene3D G3DSA:3.40.50.2020 2 208 2.7E-75 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS11650 739ff642cf4bccae2879e7e5c4dbe485 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 2.9E-90 T 14-09-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 PAJ_RS11650 739ff642cf4bccae2879e7e5c4dbe485 208 SUPERFAMILY SSF53271 4 206 3.02E-66 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS11650 739ff642cf4bccae2879e7e5c4dbe485 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 5.8E-65 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like PAJ_RS11650 739ff642cf4bccae2879e7e5c4dbe485 208 PANTHER PTHR10285 1 197 1.8E-102 T 14-09-2016 PAJ_RS01360 b15590c435b5d669e51b67f46da53729 390 PIRSF PIRSF000138 2 380 1.3E-120 T 14-09-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 PAJ_RS01360 b15590c435b5d669e51b67f46da53729 390 SUPERFAMILY SSF51395 223 375 1.34E-97 T 14-09-2016 PAJ_RS01360 b15590c435b5d669e51b67f46da53729 390 SUPERFAMILY SSF51395 6 193 1.34E-97 T 14-09-2016 PAJ_RS01360 b15590c435b5d669e51b67f46da53729 390 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 73.834 T 14-09-2016 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 PAJ_RS01360 b15590c435b5d669e51b67f46da53729 390 PANTHER PTHR10578 7 380 3.3E-162 T 14-09-2016 PAJ_RS01360 b15590c435b5d669e51b67f46da53729 390 SMART SM01240 195 388 0.0098 T 14-09-2016 PAJ_RS01360 b15590c435b5d669e51b67f46da53729 390 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 14-09-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 PAJ_RS01360 b15590c435b5d669e51b67f46da53729 390 PANTHER PTHR10578:SF65 7 380 3.3E-162 T 14-09-2016 PAJ_RS01360 b15590c435b5d669e51b67f46da53729 390 Pfam PF01070 FMN-dependent dehydrogenase 13 375 3.3E-124 T 14-09-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 PAJ_RS01360 b15590c435b5d669e51b67f46da53729 390 Gene3D G3DSA:3.20.20.70 6 377 3.1E-133 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS03680 0cdd055e390f482fcccff42a642e175e 261 PANTHER PTHR10108 1 215 1.9E-36 T 14-09-2016 PAJ_RS03680 0cdd055e390f482fcccff42a642e175e 261 Pfam PF13489 Methyltransferase domain 32 202 3.5E-16 T 14-09-2016 PAJ_RS03680 0cdd055e390f482fcccff42a642e175e 261 PANTHER PTHR10108:SF919 1 215 1.9E-36 T 14-09-2016 PAJ_RS03680 0cdd055e390f482fcccff42a642e175e 261 SUPERFAMILY SSF53335 4 255 4.6E-40 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03680 0cdd055e390f482fcccff42a642e175e 261 Gene3D G3DSA:3.40.50.150 35 255 7.9E-32 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03265 878be867566686e22697ab2686926761 240 PANTHER PTHR24220:SF569 3 239 1.5E-160 T 14-09-2016 PAJ_RS03265 878be867566686e22697ab2686926761 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS03265 878be867566686e22697ab2686926761 240 PANTHER PTHR24220 3 239 1.5E-160 T 14-09-2016 PAJ_RS03265 878be867566686e22697ab2686926761 240 PIRSF PIRSF039085 1 240 2.4E-108 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PAJ_RS03265 878be867566686e22697ab2686926761 240 Gene3D G3DSA:3.40.50.300 1 237 2.6E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03265 878be867566686e22697ab2686926761 240 Pfam PF00005 ABC transporter 17 165 6.8E-37 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS03265 878be867566686e22697ab2686926761 240 SUPERFAMILY SSF52540 1 235 2.15E-79 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS03265 878be867566686e22697ab2686926761 240 SMART SM00382 26 213 1.2E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS11790 0492bf129aa1d731b711e33d32087e86 299 Pfam PF06504 Replication protein C (RepC) 3 274 7.7E-148 T 14-09-2016 IPR010522 Replication protein C, bacterial PAJ_RS00760 f584f3fe7246e56359642baf871f41b6 208 PANTHER PTHR10954 11 194 3.4E-83 T 14-09-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 PAJ_RS00760 f584f3fe7246e56359642baf871f41b6 208 Hamap MF_00052_B Ribonuclease HII [rnhB]. 11 190 39.315 T 14-09-2016 IPR022898 Ribonuclease HII GO:0004523 PAJ_RS00760 f584f3fe7246e56359642baf871f41b6 208 Pfam PF01351 Ribonuclease HII 13 189 1.4E-39 T 14-09-2016 IPR024567 Ribonuclease HII/HIII domain PAJ_RS00760 f584f3fe7246e56359642baf871f41b6 208 Gene3D G3DSA:3.30.420.10 11 151 1.5E-47 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS00760 f584f3fe7246e56359642baf871f41b6 208 SUPERFAMILY SSF53098 5 194 1.82E-70 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PAJ_RS20165 87c1ea4c4dbe612f54d1cd60c3d98efc 281 PIRSF PIRSF005956 10 280 1.1E-97 T 14-09-2016 IPR005137 Photosystem I BtpA, assembly PAJ_RS20165 87c1ea4c4dbe612f54d1cd60c3d98efc 281 Pfam PF03437 BtpA family 20 275 3.3E-68 T 14-09-2016 IPR005137 Photosystem I BtpA, assembly PAJ_RS20165 87c1ea4c4dbe612f54d1cd60c3d98efc 281 SUPERFAMILY SSF51366 11 275 1.57E-30 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PAJ_RS20165 87c1ea4c4dbe612f54d1cd60c3d98efc 281 PANTHER PTHR21381 8 271 5.3E-92 T 14-09-2016 IPR005137 Photosystem I BtpA, assembly PAJ_RS20165 87c1ea4c4dbe612f54d1cd60c3d98efc 281 ProDom PD011184 BTPA I PHOTOSYSTEM BIOGENESIS ASSEMBLY SGCQ TRIPHOSPHATASE NUCLEOSIDE PAE3553 ENZYME 42 221 9.0E-61 T 14-09-2016 IPR005137 Photosystem I BtpA, assembly PAJ_RS20165 87c1ea4c4dbe612f54d1cd60c3d98efc 281 Gene3D G3DSA:3.20.20.70 72 252 3.4E-9 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS20165 87c1ea4c4dbe612f54d1cd60c3d98efc 281 PANTHER PTHR21381:SF3 8 271 5.3E-92 T 14-09-2016 PAJ_RS20165 87c1ea4c4dbe612f54d1cd60c3d98efc 281 TIGRFAM TIGR00259 thylakoid_BtpA: membrane complex biogenesis protein, BtpA family 20 275 6.3E-64 T 14-09-2016 IPR005137 Photosystem I BtpA, assembly PAJ_RS10600 392c80a13e65608ce01dc490ddfe5ece 325 PANTHER PTHR11432 1 321 3.2E-230 T 14-09-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 PAJ_RS10600 392c80a13e65608ce01dc490ddfe5ece 325 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 323 23.83 T 14-09-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 PAJ_RS10600 392c80a13e65608ce01dc490ddfe5ece 325 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 14-09-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 PAJ_RS10600 392c80a13e65608ce01dc490ddfe5ece 325 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 211 224 - T 14-09-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 PAJ_RS10600 392c80a13e65608ce01dc490ddfe5ece 325 Pfam PF00146 NADH dehydrogenase 18 316 4.5E-119 T 14-09-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 PAJ_RS10600 392c80a13e65608ce01dc490ddfe5ece 325 PANTHER PTHR11432:SF8 1 321 3.2E-230 T 14-09-2016 PAJ_RS06750 fd1a9073c5757e85f22d311026a1bd1f 155 Pfam PF07670 Nucleoside recognition 30 110 6.6E-6 T 14-09-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS04620 385916791372e13d228c185cdb920ff3 180 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 50.404 T 14-09-2016 IPR022987 Uncharacterised protein family UPF0227 PAJ_RS04620 385916791372e13d228c185cdb920ff3 180 PANTHER PTHR35602 1 177 2.6E-122 T 14-09-2016 PAJ_RS04620 385916791372e13d228c185cdb920ff3 180 PANTHER PTHR35602:SF2 1 177 2.6E-122 T 14-09-2016 PAJ_RS04620 385916791372e13d228c185cdb920ff3 180 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 2.7E-63 T 14-09-2016 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA PAJ_RS04090 679b2f2fe51f32c1dbe85b352f311de9 116 TIGRFAM TIGR01594 holin_lambda: phage holin, lambda family 1 111 3.9E-16 T 14-09-2016 IPR006481 Bacteriophage lambda, GpS, holin PAJ_RS04090 679b2f2fe51f32c1dbe85b352f311de9 116 Pfam PF05106 Phage holin family (Lysis protein S) 4 107 1.5E-23 T 14-09-2016 IPR006481 Bacteriophage lambda, GpS, holin PAJ_RS03845 6da2353ce42dd2146d90afd597985d7d 715 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 15 710 2.5E-268 T 14-09-2016 IPR010020 Integral membrane protein, YccS/YhfK PAJ_RS03845 6da2353ce42dd2146d90afd597985d7d 715 Pfam PF12805 FUSC-like inner membrane protein yccS 72 351 6.8E-101 T 14-09-2016 IPR032692 Integral membrane protein YccS, N-terminal PAJ_RS03845 6da2353ce42dd2146d90afd597985d7d 715 Pfam PF13515 Fusaric acid resistance protein-like 412 531 1.4E-22 T 14-09-2016 PAJ_RS03845 6da2353ce42dd2146d90afd597985d7d 715 PANTHER PTHR30509 7 714 1.1E-301 T 14-09-2016 PAJ_RS03845 6da2353ce42dd2146d90afd597985d7d 715 PANTHER PTHR30509:SF8 7 714 1.1E-301 T 14-09-2016 PAJ_RS03845 6da2353ce42dd2146d90afd597985d7d 715 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 15 710 3.6E-298 T 14-09-2016 IPR010019 Integral membrane protein, YccS PAJ_RS07000 12af7b22c49931454f5d12d06968533d 398 SUPERFAMILY SSF53850 12 395 4.89E-34 T 14-09-2016 PAJ_RS07000 12af7b22c49931454f5d12d06968533d 398 PANTHER PTHR30222:SF8 9 96 2.4E-108 T 14-09-2016 PAJ_RS07000 12af7b22c49931454f5d12d06968533d 398 PANTHER PTHR30222:SF8 118 395 2.4E-108 T 14-09-2016 PAJ_RS07000 12af7b22c49931454f5d12d06968533d 398 PANTHER PTHR30222 9 96 2.4E-108 T 14-09-2016 PAJ_RS07000 12af7b22c49931454f5d12d06968533d 398 PANTHER PTHR30222 118 395 2.4E-108 T 14-09-2016 PAJ_RS07000 12af7b22c49931454f5d12d06968533d 398 Gene3D G3DSA:3.40.190.10 145 310 1.4E-13 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PANTHER PTHR11922:SF25 1 189 6.3E-84 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 5.6E-5 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 5.6E-5 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 8.3E-14 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 8.3E-14 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 8.3E-14 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PANTHER PTHR11922 1 189 6.3E-84 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 186 3.7E-54 T 14-09-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 Pfam PF00117 Glutamine amidotransferase class-I 6 186 7.3E-45 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 Gene3D G3DSA:3.40.50.880 3 189 2.5E-56 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 SUPERFAMILY SSF52317 3 191 1.68E-47 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00097 Anthranilate synthase component II signature 4 18 1.2E-35 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00097 Anthranilate synthase component II signature 124 136 1.2E-35 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00097 Anthranilate synthase component II signature 52 61 1.2E-35 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00097 Anthranilate synthase component II signature 104 112 1.2E-35 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00097 Anthranilate synthase component II signature 166 179 1.2E-35 T 14-09-2016 PAJ_RS07700 bbaa285f29733d2cb1c8b87bd630a7ed 193 PRINTS PR00097 Anthranilate synthase component II signature 79 90 1.2E-35 T 14-09-2016 PAJ_RS16320 40d06930389c37def79bb53d8bdb30be 235 PANTHER PTHR24220:SF568 5 234 4.0E-138 T 14-09-2016 PAJ_RS16320 40d06930389c37def79bb53d8bdb30be 235 Pfam PF00005 ABC transporter 19 163 2.6E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS16320 40d06930389c37def79bb53d8bdb30be 235 PIRSF PIRSF039137 1 235 4.0E-103 T 14-09-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 PAJ_RS16320 40d06930389c37def79bb53d8bdb30be 235 PANTHER PTHR24220 5 234 4.0E-138 T 14-09-2016 PAJ_RS16320 40d06930389c37def79bb53d8bdb30be 235 Gene3D G3DSA:3.40.50.300 3 230 7.0E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16320 40d06930389c37def79bb53d8bdb30be 235 SUPERFAMILY SSF52540 3 232 3.33E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS16320 40d06930389c37def79bb53d8bdb30be 235 SMART SM00382 28 219 2.3E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS16320 40d06930389c37def79bb53d8bdb30be 235 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS09960 2e8e2e9db49756187a4ff238fd147006 379 PANTHER PTHR33619 1 377 7.0E-82 T 14-09-2016 PAJ_RS09960 2e8e2e9db49756187a4ff238fd147006 379 Gene3D G3DSA:1.20.5.70 345 378 2.0E-18 T 14-09-2016 PAJ_RS09960 2e8e2e9db49756187a4ff238fd147006 379 Gene3D G3DSA:3.30.1950.10 90 160 1.4E-32 T 14-09-2016 PAJ_RS09960 2e8e2e9db49756187a4ff238fd147006 379 Gene3D G3DSA:3.10.560.10 161 237 1.6E-26 T 14-09-2016 PAJ_RS09960 2e8e2e9db49756187a4ff238fd147006 379 Gene3D G3DSA:3.10.560.10 238 343 5.1E-33 T 14-09-2016 PAJ_RS09960 2e8e2e9db49756187a4ff238fd147006 379 PANTHER PTHR33619:SF3 1 377 7.0E-82 T 14-09-2016 PAJ_RS09960 2e8e2e9db49756187a4ff238fd147006 379 Pfam PF02563 Polysaccharide biosynthesis/export protein 81 165 2.3E-27 T 14-09-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 PAJ_RS09960 2e8e2e9db49756187a4ff238fd147006 379 Pfam PF10531 SLBB domain 173 220 3.0E-6 T 14-09-2016 IPR019554 Soluble ligand binding domain PAJ_RS09960 2e8e2e9db49756187a4ff238fd147006 379 Pfam PF10531 SLBB domain 256 306 4.2E-4 T 14-09-2016 IPR019554 Soluble ligand binding domain PAJ_RS00540 e2234cdb0496279ea7b027db10ead961 308 Gene3D G3DSA:3.40.50.300 3 228 6.9E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00540 e2234cdb0496279ea7b027db10ead961 308 SUPERFAMILY SSF52540 3 232 7.94E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS00540 e2234cdb0496279ea7b027db10ead961 308 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS00540 e2234cdb0496279ea7b027db10ead961 308 PANTHER PTHR24220 6 303 1.1E-186 T 14-09-2016 PAJ_RS00540 e2234cdb0496279ea7b027db10ead961 308 PANTHER PTHR24220:SF305 6 303 1.1E-186 T 14-09-2016 PAJ_RS00540 e2234cdb0496279ea7b027db10ead961 308 Pfam PF00005 ABC transporter 21 165 1.2E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS00540 e2234cdb0496279ea7b027db10ead961 308 SMART SM00382 30 213 6.1E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS01405 b17d0c394519c825b562e1794373bc8b 215 PANTHER PTHR10794 102 213 1.6E-15 T 14-09-2016 PAJ_RS01405 b17d0c394519c825b562e1794373bc8b 215 Pfam PF02517 CAAX protease self-immunity 114 206 2.9E-18 T 14-09-2016 IPR003675 CAAX amino terminal protease GO:0016020 PAJ_RS03305 e21e242f821b96c546780e392e3f8594 369 PANTHER PTHR10283 16 368 6.6E-59 T 14-09-2016 PAJ_RS03305 e21e242f821b96c546780e392e3f8594 369 Pfam PF03600 Citrate transporter 20 302 1.1E-23 T 14-09-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 PAJ_RS03305 e21e242f821b96c546780e392e3f8594 369 PANTHER PTHR10283:SF95 16 368 6.6E-59 T 14-09-2016 PAJ_RS13090 e25a9b278d0ab9abeb33394f599f6337 73 SUPERFAMILY SSF50182 21 72 8.72E-21 T 14-09-2016 IPR010920 LSM domain PAJ_RS13090 e25a9b278d0ab9abeb33394f599f6337 73 Gene3D G3DSA:2.30.30.100 19 72 1.5E-33 T 14-09-2016 PAJ_RS13090 e25a9b278d0ab9abeb33394f599f6337 73 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 71 9.2E-27 T 14-09-2016 IPR010305 Protein of unknown function DUF903 PAJ_RS13090 e25a9b278d0ab9abeb33394f599f6337 73 PANTHER PTHR37011:SF2 1 72 1.4E-37 T 14-09-2016 PAJ_RS13090 e25a9b278d0ab9abeb33394f599f6337 73 PANTHER PTHR37011 1 72 1.4E-37 T 14-09-2016 PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 SUPERFAMILY SSF51735 5 246 2.75E-72 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 Gene3D G3DSA:3.40.50.720 3 246 1.1E-73 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.6E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.6E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.6E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PANTHER PTHR24321 1 246 4.1E-43 T 14-09-2016 PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 246 6.5E-56 T 14-09-2016 PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PANTHER PTHR24321:SF6 1 246 4.1E-43 T 14-09-2016 PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.1E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.1E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.1E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.1E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.1E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS08765 1581ae20220da2af4fdc65c3937cd1a7 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 2.1E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PAJ_RS05965 47297e6fed048072976050bff78a7d47 135 PANTHER PTHR10374 1 127 7.7E-60 T 14-09-2016 PAJ_RS05965 47297e6fed048072976050bff78a7d47 135 SUPERFAMILY SSF54593 1 128 2.82E-34 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS05965 47297e6fed048072976050bff78a7d47 135 ProSitePatterns PS00935 Glyoxalase I signature 2. 69 81 - T 14-09-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 PAJ_RS05965 47297e6fed048072976050bff78a7d47 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 1.5E-25 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PAJ_RS05965 47297e6fed048072976050bff78a7d47 135 Gene3D G3DSA:3.10.180.10 1 127 5.7E-47 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS05965 47297e6fed048072976050bff78a7d47 135 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 14-09-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 PAJ_RS05965 47297e6fed048072976050bff78a7d47 135 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 134 6.3E-68 T 14-09-2016 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 PAJ_RS03065 aee90276506a8f268739ef806a10d9ac 380 SUPERFAMILY SSF141523 177 233 7.85E-28 T 14-09-2016 PAJ_RS03065 aee90276506a8f268739ef806a10d9ac 380 SUPERFAMILY SSF141523 94 148 7.85E-28 T 14-09-2016 PAJ_RS03065 aee90276506a8f268739ef806a10d9ac 380 PANTHER PTHR30582 35 312 7.5E-166 T 14-09-2016 PAJ_RS03065 aee90276506a8f268739ef806a10d9ac 380 PANTHER PTHR30582:SF8 35 312 7.5E-166 T 14-09-2016 PAJ_RS03065 aee90276506a8f268739ef806a10d9ac 380 Pfam PF03734 L,D-transpeptidase catalytic domain 100 231 1.9E-17 T 14-09-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 PAJ_RS03065 aee90276506a8f268739ef806a10d9ac 380 Gene3D G3DSA:2.40.440.10 93 234 1.3E-34 T 14-09-2016 PAJ_RS11210 43cae9c710ccb465ef5c2c22c74cf0d0 413 PANTHER PTHR11706 5 413 1.7E-241 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 PAJ_RS11210 43cae9c710ccb465ef5c2c22c74cf0d0 413 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 19 377 2.1E-98 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 PAJ_RS11210 43cae9c710ccb465ef5c2c22c74cf0d0 413 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 3 410 36.218 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 PAJ_RS11210 43cae9c710ccb465ef5c2c22c74cf0d0 413 PANTHER PTHR11706:SF42 5 413 1.7E-241 T 14-09-2016 PAJ_RS11210 43cae9c710ccb465ef5c2c22c74cf0d0 413 PRINTS PR00447 Natural resistance-associated macrophage protein signature 299 318 5.4E-30 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 PAJ_RS11210 43cae9c710ccb465ef5c2c22c74cf0d0 413 PRINTS PR00447 Natural resistance-associated macrophage protein signature 200 223 5.4E-30 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 PAJ_RS11210 43cae9c710ccb465ef5c2c22c74cf0d0 413 PRINTS PR00447 Natural resistance-associated macrophage protein signature 97 123 5.4E-30 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 PAJ_RS11210 43cae9c710ccb465ef5c2c22c74cf0d0 413 PRINTS PR00447 Natural resistance-associated macrophage protein signature 150 171 5.4E-30 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 PAJ_RS11210 43cae9c710ccb465ef5c2c22c74cf0d0 413 PRINTS PR00447 Natural resistance-associated macrophage protein signature 125 144 5.4E-30 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 PAJ_RS11210 43cae9c710ccb465ef5c2c22c74cf0d0 413 Pfam PF01566 Natural resistance-associated macrophage protein 38 380 2.9E-123 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 PAJ_RS12325 fc6d706b41183cc270471c7147c16920 371 SMART SM00710 155 177 17.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat PAJ_RS12325 fc6d706b41183cc270471c7147c16920 371 SMART SM00710 178 204 59.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat PAJ_RS12325 fc6d706b41183cc270471c7147c16920 371 SMART SM00710 263 290 670.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat PAJ_RS12325 fc6d706b41183cc270471c7147c16920 371 Pfam PF13229 Right handed beta helix region 120 238 2.5E-7 T 14-09-2016 PAJ_RS12325 fc6d706b41183cc270471c7147c16920 371 SUPERFAMILY SSF51126 46 306 7.39E-15 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor PAJ_RS16630 de850a43f0d079fad6362fe3164b732e 367 Gene3D G3DSA:3.40.190.10 144 298 6.2E-16 T 14-09-2016 PAJ_RS16630 de850a43f0d079fad6362fe3164b732e 367 PANTHER PTHR30006 217 334 1.6E-41 T 14-09-2016 PAJ_RS16630 de850a43f0d079fad6362fe3164b732e 367 PANTHER PTHR30006 1 199 1.6E-41 T 14-09-2016 PAJ_RS16630 de850a43f0d079fad6362fe3164b732e 367 PANTHER PTHR30006:SF10 217 334 1.6E-41 T 14-09-2016 PAJ_RS16630 de850a43f0d079fad6362fe3164b732e 367 PANTHER PTHR30006:SF10 1 199 1.6E-41 T 14-09-2016 PAJ_RS16630 de850a43f0d079fad6362fe3164b732e 367 Gene3D G3DSA:3.40.190.10 299 337 1.5E-15 T 14-09-2016 PAJ_RS16630 de850a43f0d079fad6362fe3164b732e 367 Gene3D G3DSA:3.40.190.10 36 143 1.5E-15 T 14-09-2016 PAJ_RS16630 de850a43f0d079fad6362fe3164b732e 367 Pfam PF13416 Bacterial extracellular solute-binding protein 57 332 8.5E-25 T 14-09-2016 PAJ_RS16630 de850a43f0d079fad6362fe3164b732e 367 SUPERFAMILY SSF53850 35 340 3.57E-39 T 14-09-2016 PAJ_RS08645 c1d6c4068c897d2472c50843f53ea780 275 TIGRFAM TIGR00145 TIGR00145: FTR1 family protein 1 267 6.2E-94 T 14-09-2016 IPR005217 Iron permease FTR1-like GO:0005381|GO:0005886|GO:0006827|GO:0033573 PAJ_RS08645 c1d6c4068c897d2472c50843f53ea780 275 PANTHER PTHR31632 1 268 2.6E-98 T 14-09-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 PAJ_RS08645 c1d6c4068c897d2472c50843f53ea780 275 Pfam PF03239 Iron permease FTR1 family 1 259 4.2E-68 T 14-09-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 PAJ_RS17690 2715ab48833d42dc4fb184d78ef14948 296 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 27 292 4.8E-85 T 14-09-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 PAJ_RS17690 2715ab48833d42dc4fb184d78ef14948 296 SUPERFAMILY SSF161098 34 286 1.31E-33 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS17690 2715ab48833d42dc4fb184d78ef14948 296 PANTHER PTHR30425 5 292 1.6E-132 T 14-09-2016 PAJ_RS17690 2715ab48833d42dc4fb184d78ef14948 296 Gene3D G3DSA:1.10.3720.10 28 295 1.3E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS17690 2715ab48833d42dc4fb184d78ef14948 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 289 2.7E-29 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS17690 2715ab48833d42dc4fb184d78ef14948 296 PANTHER PTHR30425:SF0 5 292 1.6E-132 T 14-09-2016 PAJ_RS08405 a0feaff8635265b13d86201cceaa3762 273 Pfam PF01904 Protein of unknown function DUF72 22 249 7.1E-46 T 14-09-2016 IPR002763 Protein of unknown function DUF72 PAJ_RS08405 a0feaff8635265b13d86201cceaa3762 273 PANTHER PTHR30348:SF3 3 272 4.6E-70 T 14-09-2016 PAJ_RS08405 a0feaff8635265b13d86201cceaa3762 273 PANTHER PTHR30348 3 272 4.6E-70 T 14-09-2016 PAJ_RS08405 a0feaff8635265b13d86201cceaa3762 273 SUPERFAMILY SSF117396 3 254 1.96E-57 T 14-09-2016 IPR002763 Protein of unknown function DUF72 PAJ_RS08405 a0feaff8635265b13d86201cceaa3762 273 Gene3D G3DSA:3.20.20.410 3 255 2.0E-61 T 14-09-2016 IPR002763 Protein of unknown function DUF72 PAJ_RS01665 813bdaf89007f76138d92c5d28139924 454 SUPERFAMILY SSF103473 1 390 1.44E-64 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS01665 813bdaf89007f76138d92c5d28139924 454 Gene3D G3DSA:1.20.1250.20 211 392 2.7E-25 T 14-09-2016 PAJ_RS01665 813bdaf89007f76138d92c5d28139924 454 Gene3D G3DSA:1.20.1250.20 13 195 8.8E-33 T 14-09-2016 PAJ_RS01665 813bdaf89007f76138d92c5d28139924 454 PANTHER PTHR23510:SF6 1 400 4.0E-252 T 14-09-2016 PAJ_RS01665 813bdaf89007f76138d92c5d28139924 454 Pfam PF07690 Major Facilitator Superfamily 20 354 1.1E-39 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS01665 813bdaf89007f76138d92c5d28139924 454 PANTHER PTHR23510 1 400 4.0E-252 T 14-09-2016 PAJ_RS04140 868c5f9ee85fda026d5ac124b635febb 434 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 44 384 1.2E-80 T 14-09-2016 IPR006427 Phage portal protein, HK97 PAJ_RS04140 868c5f9ee85fda026d5ac124b635febb 434 Pfam PF04860 Phage portal protein 52 378 1.8E-97 T 14-09-2016 IPR006944 Bacteriophage/Gene transfer agent portal protein PAJ_RS04940 f92e13a4e470cba402b65e2b8a46ecee 294 SUPERFAMILY SSF103481 187 276 4.18E-11 T 14-09-2016 PAJ_RS04940 f92e13a4e470cba402b65e2b8a46ecee 294 PANTHER PTHR32322:SF9 4 294 5.5E-47 T 14-09-2016 PAJ_RS04940 f92e13a4e470cba402b65e2b8a46ecee 294 Pfam PF00892 EamA-like transporter family 7 130 3.5E-18 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS04940 f92e13a4e470cba402b65e2b8a46ecee 294 Pfam PF00892 EamA-like transporter family 139 275 4.2E-17 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS04940 f92e13a4e470cba402b65e2b8a46ecee 294 SUPERFAMILY SSF103481 39 132 8.89E-15 T 14-09-2016 PAJ_RS04940 f92e13a4e470cba402b65e2b8a46ecee 294 PANTHER PTHR32322 4 294 5.5E-47 T 14-09-2016 PAJ_RS09835 e95c5891d16bfc6a0f82e3091d5c376c 164 SUPERFAMILY SSF55826 9 162 3.53E-33 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS09835 e95c5891d16bfc6a0f82e3091d5c376c 164 PANTHER PTHR30411 9 151 6.1E-82 T 14-09-2016 PAJ_RS09835 e95c5891d16bfc6a0f82e3091d5c376c 164 Pfam PF04073 Aminoacyl-tRNA editing domain 29 153 3.7E-24 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS09835 e95c5891d16bfc6a0f82e3091d5c376c 164 PANTHER PTHR30411:SF5 9 151 6.1E-82 T 14-09-2016 PAJ_RS09835 e95c5891d16bfc6a0f82e3091d5c376c 164 Gene3D G3DSA:3.90.960.10 8 162 1.2E-29 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PAJ_RS09845 736da8a1b7357f12cad2224b0075fb9b 432 SUPERFAMILY SSF53187 331 422 1.74E-33 T 14-09-2016 PAJ_RS09845 736da8a1b7357f12cad2224b0075fb9b 432 SUPERFAMILY SSF53187 19 110 1.74E-33 T 14-09-2016 PAJ_RS09845 736da8a1b7357f12cad2224b0075fb9b 432 SUPERFAMILY SSF53187 145 269 1.74E-33 T 14-09-2016 PAJ_RS09845 736da8a1b7357f12cad2224b0075fb9b 432 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 29 276 1.6E-19 T 14-09-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 PAJ_RS09845 736da8a1b7357f12cad2224b0075fb9b 432 Gene3D G3DSA:3.40.630.10 19 265 7.2E-16 T 14-09-2016 PAJ_RS19375 50e8b677cdc0ad31267e88ea11c5de20 574 Pfam PF04183 IucA / IucC family 136 365 2.6E-53 T 14-09-2016 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 PAJ_RS19375 50e8b677cdc0ad31267e88ea11c5de20 574 ProSitePatterns PS00818 Dps protein family signature 1. 536 552 - T 14-09-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 PAJ_RS19375 50e8b677cdc0ad31267e88ea11c5de20 574 Pfam PF06276 Ferric iron reductase FhuF-like transporter 398 554 5.6E-29 T 14-09-2016 IPR022770 Ferric iron reductase FhuF domain PAJ_RS19375 50e8b677cdc0ad31267e88ea11c5de20 574 PANTHER PTHR34384 135 574 2.4E-65 T 14-09-2016 PAJ_RS06790 610af7245f2527e836a35a8b16a39bbc 151 SUPERFAMILY SSF53927 67 136 3.23E-5 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 PAJ_RS06790 610af7245f2527e836a35a8b16a39bbc 151 Gene3D G3DSA:3.40.140.10 67 136 0.001 T 14-09-2016 PAJ_RS06790 610af7245f2527e836a35a8b16a39bbc 151 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 76 118 - T 14-09-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 PAJ_RS03690 59a1d019e24eb0cb768281b283a55516 241 Pfam PF04288 MukE-like family 10 231 1.1E-125 T 14-09-2016 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 PAJ_RS03690 59a1d019e24eb0cb768281b283a55516 241 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 239 49.41 T 14-09-2016 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 PAJ_RS14235 a92006cc72b7ccf7ca47063a364a91b4 329 Pfam PF13531 Bacterial extracellular solute-binding protein 33 282 3.3E-23 T 14-09-2016 PAJ_RS14235 a92006cc72b7ccf7ca47063a364a91b4 329 PIRSF PIRSF002825 1 327 9.0E-53 T 14-09-2016 IPR026045 Ferric binding protein PAJ_RS14235 a92006cc72b7ccf7ca47063a364a91b4 329 Gene3D G3DSA:3.40.190.10 130 261 3.4E-27 T 14-09-2016 PAJ_RS14235 a92006cc72b7ccf7ca47063a364a91b4 329 PANTHER PTHR30006 28 328 7.2E-44 T 14-09-2016 PAJ_RS14235 a92006cc72b7ccf7ca47063a364a91b4 329 SUPERFAMILY SSF53850 26 316 2.41E-55 T 14-09-2016 PAJ_RS14235 a92006cc72b7ccf7ca47063a364a91b4 329 Gene3D G3DSA:3.40.190.10 262 313 2.4E-42 T 14-09-2016 PAJ_RS14235 a92006cc72b7ccf7ca47063a364a91b4 329 Gene3D G3DSA:3.40.190.10 8 127 2.4E-42 T 14-09-2016 PAJ_RS13880 500aa1bb6331216888e4d0c5f5b64555 324 TIGRFAM TIGR03756 conj_TIGR03756: integrating conjugative element protein, PFL_4710 family 26 322 4.2E-130 T 14-09-2016 IPR026331 Integrating conjugative element protein PFL_4710 PAJ_RS13880 500aa1bb6331216888e4d0c5f5b64555 324 Pfam PF06834 TraU protein 35 312 1.9E-70 T 14-09-2016 IPR009649 TraU PAJ_RS07050 8ad50cec121d0d7c7ab5d65f1c25b10c 129 Pfam PF01042 Endoribonuclease L-PSP 17 126 7.8E-25 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family PAJ_RS07050 8ad50cec121d0d7c7ab5d65f1c25b10c 129 PANTHER PTHR11803 17 129 1.1E-26 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family PAJ_RS07050 8ad50cec121d0d7c7ab5d65f1c25b10c 129 SUPERFAMILY SSF55298 15 128 1.54E-32 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PAJ_RS07050 8ad50cec121d0d7c7ab5d65f1c25b10c 129 Gene3D G3DSA:3.30.1330.40 15 127 4.9E-30 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PAJ_RS08470 06404e4c893559630c656d51ee862588 130 Pfam PF06366 Flagellar protein FlhE 28 130 1.0E-33 T 14-09-2016 IPR009420 Flagellar protein FlhE PAJ_RS08890 b9b891aae4c8292ccefdb648fcacdda1 453 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 363 372 - T 14-09-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS08890 b9b891aae4c8292ccefdb648fcacdda1 453 PANTHER PTHR15184:SF9 5 452 2.1E-237 T 14-09-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS08890 b9b891aae4c8292ccefdb648fcacdda1 453 SMART SM00382 173 356 1.0E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS08890 b9b891aae4c8292ccefdb648fcacdda1 453 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 29 450 7.8E-197 T 14-09-2016 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS08890 b9b891aae4c8292ccefdb648fcacdda1 453 Gene3D G3DSA:3.40.50.300 141 421 1.2E-89 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08890 b9b891aae4c8292ccefdb648fcacdda1 453 PANTHER PTHR15184 5 452 2.1E-237 T 14-09-2016 PAJ_RS08890 b9b891aae4c8292ccefdb648fcacdda1 453 SUPERFAMILY SSF52540 109 378 1.77E-93 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08890 b9b891aae4c8292ccefdb648fcacdda1 453 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 6 452 5.5E-191 T 14-09-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS08890 b9b891aae4c8292ccefdb648fcacdda1 453 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 161 372 7.6E-72 T 14-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PAJ_RS17590 7935c595672a64cb31a1b61554a64c78 486 Pfam PF05762 VWA domain containing CoxE-like protein 310 444 2.2E-8 T 14-09-2016 IPR008912 Uncharacterised protein family CoxE-like PAJ_RS17590 7935c595672a64cb31a1b61554a64c78 486 PANTHER PTHR36846 1 486 3.5E-119 T 14-09-2016 PAJ_RS17590 7935c595672a64cb31a1b61554a64c78 486 SMART SM00327 322 486 6.1E-5 T 14-09-2016 IPR002035 von Willebrand factor, type A PAJ_RS17590 7935c595672a64cb31a1b61554a64c78 486 Hamap MF_01626 Protein ViaA [viaA]. 1 486 53.235 T 14-09-2016 IPR023481 Uncharacterised protein family ViaA PAJ_RS17590 7935c595672a64cb31a1b61554a64c78 486 SUPERFAMILY SSF53300 320 462 5.19E-17 T 14-09-2016 IPR002035 von Willebrand factor, type A PAJ_RS09540 545cd992cb2c9438fb813e79486f09b6 344 PANTHER PTHR32196 1 344 5.4E-90 T 14-09-2016 PAJ_RS09540 545cd992cb2c9438fb813e79486f09b6 344 PANTHER PTHR32196:SF21 1 344 5.4E-90 T 14-09-2016 PAJ_RS09540 545cd992cb2c9438fb813e79486f09b6 344 Pfam PF02653 Branched-chain amino acid transport system / permease component 63 333 1.2E-45 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 PANTHER PTHR38786 1 145 1.0E-43 T 14-09-2016 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 142 1.9E-28 T 14-09-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 PIRSF PIRSF019404 1 147 7.2E-48 T 14-09-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 PRINTS PR01004 Flagellar FliJ protein signature 4 26 5.7E-53 T 14-09-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 PRINTS PR01004 Flagellar FliJ protein signature 126 146 5.7E-53 T 14-09-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 PRINTS PR01004 Flagellar FliJ protein signature 86 107 5.7E-53 T 14-09-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 PRINTS PR01004 Flagellar FliJ protein signature 63 84 5.7E-53 T 14-09-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 PRINTS PR01004 Flagellar FliJ protein signature 27 43 5.7E-53 T 14-09-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 PRINTS PR01004 Flagellar FliJ protein signature 108 126 5.7E-53 T 14-09-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 PRINTS PR01004 Flagellar FliJ protein signature 44 61 5.7E-53 T 14-09-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PAJ_RS08895 7f2b181a2a8ca9e5ef2dc9ffe4d19f30 147 Pfam PF02050 Flagellar FliJ protein 20 141 4.0E-32 T 14-09-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 PAJ_RS10880 23f7dae243fd7cce53fca5a118ba648f 181 Pfam PF04315 Elongation factor P hydroxylase 13 175 3.1E-80 T 14-09-2016 IPR007411 Elongation factor P hydroxylase KEGG: 00053+1.14.-.-|KEGG: 00073+1.14.-.-|KEGG: 00130+1.14.-.-|KEGG: 00253+1.14.-.-|KEGG: 00361+1.14.-.-|KEGG: 00363+1.14.-.-|KEGG: 00380+1.14.-.-|KEGG: 00522+1.14.-.-|KEGG: 00600+1.14.-.-|KEGG: 00624+1.14.-.-|KEGG: 00625+1.14.-.-|KEGG: 00627+1.14.-.-|KEGG: 00903+1.14.-.-|KEGG: 00904+1.14.-.-|KEGG: 00905+1.14.-.-|KEGG: 00906+1.14.-.-|KEGG: 00940+1.14.-.-|KEGG: 00945+1.14.-.-|KEGG: 00966+1.14.-.-|KEGG: 00981+1.14.-.- PAJ_RS07420 c7d0c9b9e356a3abdcc8f2d2bab48306 91 PANTHER PTHR38008:SF1 21 89 7.5E-20 T 14-09-2016 PAJ_RS07420 c7d0c9b9e356a3abdcc8f2d2bab48306 91 PANTHER PTHR38008 21 89 7.5E-20 T 14-09-2016 PAJ_RS07420 c7d0c9b9e356a3abdcc8f2d2bab48306 91 Pfam PF03891 Domain of unknown function (DUF333) 42 87 2.4E-15 T 14-09-2016 IPR005590 Protein of unknown function DUF333 PAJ_RS04785 86f64df943bd3671689d68143b8ff002 192 PANTHER PTHR30055 1 182 5.4E-16 T 14-09-2016 PAJ_RS04785 86f64df943bd3671689d68143b8ff002 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 62 1.5E-13 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS04785 86f64df943bd3671689d68143b8ff002 192 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 60 - T 14-09-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PAJ_RS04785 86f64df943bd3671689d68143b8ff002 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 8.2E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS04785 86f64df943bd3671689d68143b8ff002 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 8.2E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS04785 86f64df943bd3671689d68143b8ff002 192 SUPERFAMILY SSF46689 11 76 2.14E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS04785 86f64df943bd3671689d68143b8ff002 192 Gene3D G3DSA:1.10.357.10 12 182 3.4E-23 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS15210 df1d373b856a1690d5c7aa9098752932 446 SUPERFAMILY SSF111283 13 445 1.83E-132 T 14-09-2016 PAJ_RS15210 df1d373b856a1690d5c7aa9098752932 446 PANTHER PTHR30624:SF1 2 446 5.3E-189 T 14-09-2016 PAJ_RS15210 df1d373b856a1690d5c7aa9098752932 446 Pfam PF01523 Putative modulator of DNA gyrase 32 323 9.5E-55 T 14-09-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS15210 df1d373b856a1690d5c7aa9098752932 446 PANTHER PTHR30624 2 446 5.3E-189 T 14-09-2016 PAJ_RS07160 839bd4f76bb2ef3b05a99cd8c824a404 393 Pfam PF00534 Glycosyl transferases group 1 159 300 3.1E-8 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 PAJ_RS07160 839bd4f76bb2ef3b05a99cd8c824a404 393 PANTHER PTHR12526 62 314 3.0E-14 T 14-09-2016 PAJ_RS07160 839bd4f76bb2ef3b05a99cd8c824a404 393 PANTHER PTHR12526 334 379 3.0E-14 T 14-09-2016 PAJ_RS07160 839bd4f76bb2ef3b05a99cd8c824a404 393 Gene3D G3DSA:3.40.50.2000 161 307 2.8E-8 T 14-09-2016 PAJ_RS07160 839bd4f76bb2ef3b05a99cd8c824a404 393 SUPERFAMILY SSF53756 26 379 6.8E-23 T 14-09-2016 PAJ_RS18825 eec00a71ef64e153f480b25638d23c77 509 PANTHER PTHR11328:SF24 18 477 1.1E-69 T 14-09-2016 PAJ_RS18825 eec00a71ef64e153f480b25638d23c77 509 Gene3D G3DSA:1.20.1250.20 25 214 4.6E-14 T 14-09-2016 PAJ_RS18825 eec00a71ef64e153f480b25638d23c77 509 Gene3D G3DSA:1.20.1250.20 253 462 5.3E-5 T 14-09-2016 PAJ_RS18825 eec00a71ef64e153f480b25638d23c77 509 SUPERFAMILY SSF103473 17 469 8.72E-33 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS18825 eec00a71ef64e153f480b25638d23c77 509 PANTHER PTHR11328 18 477 1.1E-69 T 14-09-2016 PAJ_RS18825 eec00a71ef64e153f480b25638d23c77 509 Pfam PF13347 MFS/sugar transport protein 20 459 5.6E-48 T 14-09-2016 PAJ_RS16455 2abc6b7c5759eb94dea818f1ff87f623 351 Pfam PF01594 Domain of unknown function DUF20 14 328 1.3E-65 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like PAJ_RS16455 2abc6b7c5759eb94dea818f1ff87f623 351 PANTHER PTHR21716:SF17 14 344 4.4E-142 T 14-09-2016 PAJ_RS16455 2abc6b7c5759eb94dea818f1ff87f623 351 PANTHER PTHR21716 14 344 4.4E-142 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like PAJ_RS10170 b9ba762fff425ac2f40aa6097fec1151 221 PANTHER PTHR11109 1 220 4.8E-102 T 14-09-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PAJ_RS10170 b9ba762fff425ac2f40aa6097fec1151 221 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 98 114 - T 14-09-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PAJ_RS10170 b9ba762fff425ac2f40aa6097fec1151 221 Pfam PF01227 GTP cyclohydrolase I 41 218 3.7E-63 T 14-09-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PAJ_RS10170 b9ba762fff425ac2f40aa6097fec1151 221 SUPERFAMILY SSF55620 5 220 3.56E-76 T 14-09-2016 PAJ_RS10170 b9ba762fff425ac2f40aa6097fec1151 221 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 36 219 34.001 T 14-09-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PAJ_RS10170 b9ba762fff425ac2f40aa6097fec1151 221 Gene3D G3DSA:1.10.286.10 4 86 8.1E-32 T 14-09-2016 PAJ_RS10170 b9ba762fff425ac2f40aa6097fec1151 221 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 146 156 - T 14-09-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PAJ_RS10170 b9ba762fff425ac2f40aa6097fec1151 221 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 40 220 3.7E-85 T 14-09-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PAJ_RS10170 b9ba762fff425ac2f40aa6097fec1151 221 Gene3D G3DSA:3.30.1130.10 92 219 3.6E-51 T 14-09-2016 PAJ_RS11795 37a0ebc3324d1e0833eb6f45f5eeed94 288 Gene3D G3DSA:3.40.50.300 4 272 4.4E-89 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11795 37a0ebc3324d1e0833eb6f45f5eeed94 288 SUPERFAMILY SSF52540 14 183 1.23E-14 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS11795 37a0ebc3324d1e0833eb6f45f5eeed94 288 Pfam PF13481 AAA domain 9 183 3.8E-37 T 14-09-2016 PAJ_RS12885 dcc4f7ec70b11ac88e9fa1d27a797683 94 PANTHER PTHR37828:SF1 1 94 2.1E-17 T 14-09-2016 PAJ_RS12885 dcc4f7ec70b11ac88e9fa1d27a797683 94 SUPERFAMILY SSF54909 1 76 4.29E-11 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS12885 dcc4f7ec70b11ac88e9fa1d27a797683 94 Gene3D G3DSA:3.30.70.1060 12 83 2.5E-4 T 14-09-2016 PAJ_RS12885 dcc4f7ec70b11ac88e9fa1d27a797683 94 Pfam PF03795 YCII-related domain 1 79 2.4E-10 T 14-09-2016 IPR005545 YCII-related PAJ_RS12885 dcc4f7ec70b11ac88e9fa1d27a797683 94 PANTHER PTHR37828 1 94 2.1E-17 T 14-09-2016 PAJ_RS08140 21100bd5adf098b6c8d1111ea92909b1 78 Pfam PF13996 YobH-like protein 2 71 3.4E-38 T 14-09-2016 IPR025611 YobH-like protein PAJ_RS14330 e5050ef1eebb42c0b314546f5e8f7e70 188 PANTHER PTHR37089 9 188 3.8E-17 T 14-09-2016 PAJ_RS14330 e5050ef1eebb42c0b314546f5e8f7e70 188 Pfam PF05229 Spore Coat Protein U domain 26 184 4.2E-21 T 14-09-2016 IPR007893 Spore coat protein U PAJ_RS14330 e5050ef1eebb42c0b314546f5e8f7e70 188 SMART SM00972 124 185 8.5E-11 T 14-09-2016 IPR007893 Spore coat protein U PAJ_RS09180 1c83b733de84030756aea7256e330fe7 846 SUPERFAMILY SSF141571 523 634 1.31E-22 T 14-09-2016 PAJ_RS09180 1c83b733de84030756aea7256e330fe7 846 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 20 300 4.1E-85 T 14-09-2016 IPR018683 Domain of unknown function DUF2169 PAJ_RS09180 1c83b733de84030756aea7256e330fe7 846 Pfam PF13599 Pentapeptide repeats (9 copies) 530 595 7.2E-9 T 14-09-2016 IPR001646 Pentapeptide repeat PAJ_RS09180 1c83b733de84030756aea7256e330fe7 846 Pfam PF13599 Pentapeptide repeats (9 copies) 620 694 3.1E-12 T 14-09-2016 IPR001646 Pentapeptide repeat PAJ_RS09180 1c83b733de84030756aea7256e330fe7 846 Pfam PF13599 Pentapeptide repeats (9 copies) 717 786 7.2E-13 T 14-09-2016 IPR001646 Pentapeptide repeat PAJ_RS09180 1c83b733de84030756aea7256e330fe7 846 PANTHER PTHR14136 529 708 1.2E-29 T 14-09-2016 PAJ_RS09180 1c83b733de84030756aea7256e330fe7 846 PANTHER PTHR14136:SF0 529 708 1.2E-29 T 14-09-2016 PAJ_RS09180 1c83b733de84030756aea7256e330fe7 846 PANTHER PTHR14136 730 818 1.2E-29 T 14-09-2016 PAJ_RS09180 1c83b733de84030756aea7256e330fe7 846 PANTHER PTHR14136:SF0 730 818 1.2E-29 T 14-09-2016 PAJ_RS09180 1c83b733de84030756aea7256e330fe7 846 SUPERFAMILY SSF141571 621 760 1.05E-25 T 14-09-2016 PAJ_RS06810 ca01629a2183e1ce4818588e8757b491 366 SUPERFAMILY SSF51395 1 352 1.86E-112 T 14-09-2016 PAJ_RS06810 ca01629a2183e1ce4818588e8757b491 366 PANTHER PTHR22893 1 354 2.8E-146 T 14-09-2016 PAJ_RS06810 ca01629a2183e1ce4818588e8757b491 366 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 338 2.8E-67 T 14-09-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PAJ_RS06810 ca01629a2183e1ce4818588e8757b491 366 PANTHER PTHR22893:SF7 1 354 2.8E-146 T 14-09-2016 PAJ_RS06810 ca01629a2183e1ce4818588e8757b491 366 Gene3D G3DSA:3.20.20.70 1 352 3.2E-122 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS19720 28afa788b2065dbc92754a5799253d2a 239 PANTHER PTHR30400:SF0 9 236 3.0E-107 T 14-09-2016 PAJ_RS19720 28afa788b2065dbc92754a5799253d2a 239 Gene3D G3DSA:1.10.3810.10 62 228 3.0E-56 T 14-09-2016 PAJ_RS19720 28afa788b2065dbc92754a5799253d2a 239 Pfam PF00912 Transglycosylase 61 224 1.8E-47 T 14-09-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 PAJ_RS19720 28afa788b2065dbc92754a5799253d2a 239 SUPERFAMILY SSF53955 58 228 4.5E-57 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS19720 28afa788b2065dbc92754a5799253d2a 239 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 15 228 6.3E-78 T 14-09-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 PAJ_RS19720 28afa788b2065dbc92754a5799253d2a 239 PANTHER PTHR30400 9 236 3.0E-107 T 14-09-2016 PAJ_RS19720 28afa788b2065dbc92754a5799253d2a 239 Hamap MF_00766 Monofunctional biosynthetic peptidoglycan transglycosylase [mtgA]. 8 230 41.064 T 14-09-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 PAJ_RS10965 b850340a5e2fca13b7d47e9441ad637b 161 SUPERFAMILY SSF82093 30 142 7.72E-38 T 14-09-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 PAJ_RS10965 b850340a5e2fca13b7d47e9441ad637b 161 Pfam PF03100 CcmE 4 137 3.1E-42 T 14-09-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 PAJ_RS10965 b850340a5e2fca13b7d47e9441ad637b 161 PANTHER PTHR34128 2 155 1.4E-65 T 14-09-2016 PAJ_RS10965 b850340a5e2fca13b7d47e9441ad637b 161 PANTHER PTHR34128:SF1 2 155 1.4E-65 T 14-09-2016 PAJ_RS10965 b850340a5e2fca13b7d47e9441ad637b 161 Gene3D G3DSA:2.40.50.140 26 131 1.3E-37 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS10965 b850340a5e2fca13b7d47e9441ad637b 161 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 147 31.458 T 14-09-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 PAJ_RS06305 64c801e5da44b85635cc50ec9fbf16ed 476 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 26 448 1.1E-45 T 14-09-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PAJ_RS06305 64c801e5da44b85635cc50ec9fbf16ed 476 PIRSF PIRSF002744 2 471 3.4E-95 T 14-09-2016 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 PAJ_RS06305 64c801e5da44b85635cc50ec9fbf16ed 476 PANTHER PTHR31806 20 468 3.2E-102 T 14-09-2016 PAJ_RS05820 b8f6f19ffdc1f0b5a4aec9811aa15581 478 PANTHER PTHR32057 1 478 1.0E-195 T 14-09-2016 PAJ_RS05820 b8f6f19ffdc1f0b5a4aec9811aa15581 478 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 1 465 43.155 T 14-09-2016 IPR003846 Uncharacterised protein family UPF0061 PAJ_RS05820 b8f6f19ffdc1f0b5a4aec9811aa15581 478 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 14 449 6.4E-153 T 14-09-2016 IPR003846 Uncharacterised protein family UPF0061 PAJ_RS15205 a89ce1bebf63127a9f320304fe772353 128 Gene3D G3DSA:1.20.120.10 23 128 3.6E-37 T 14-09-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 PAJ_RS15205 a89ce1bebf63127a9f320304fe772353 128 PIRSF PIRSF000029 1 128 2.5E-40 T 14-09-2016 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 PAJ_RS15205 a89ce1bebf63127a9f320304fe772353 128 Pfam PF07361 Cytochrome b562 24 128 2.8E-32 T 14-09-2016 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 PAJ_RS15205 a89ce1bebf63127a9f320304fe772353 128 SUPERFAMILY SSF47175 23 128 2.06E-31 T 14-09-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 PAJ_RS17855 a07056b668ab21c8574d32ce40128163 246 SUPERFAMILY SSF52540 65 223 4.28E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17855 a07056b668ab21c8574d32ce40128163 246 PANTHER PTHR30050 5 246 6.3E-135 T 14-09-2016 PAJ_RS17855 a07056b668ab21c8574d32ce40128163 246 Gene3D G3DSA:3.40.50.300 51 223 1.6E-31 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS17855 a07056b668ab21c8574d32ce40128163 246 PIRSF PIRSF003073 2 245 7.9E-33 T 14-09-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein PAJ_RS17855 a07056b668ab21c8574d32ce40128163 246 PANTHER PTHR30050:SF9 5 246 6.3E-135 T 14-09-2016 PAJ_RS17855 a07056b668ab21c8574d32ce40128163 246 Pfam PF01695 IstB-like ATP binding protein 82 219 2.9E-18 T 14-09-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 PAJ_RS06705 98bd699349cc5e0f2c76865e666db34f 256 Pfam PF03649 Uncharacterised protein family (UPF0014) 11 246 4.0E-77 T 14-09-2016 IPR005226 UPF0014 family PAJ_RS06705 98bd699349cc5e0f2c76865e666db34f 256 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 10 252 6.1E-86 T 14-09-2016 IPR005226 UPF0014 family PAJ_RS06705 98bd699349cc5e0f2c76865e666db34f 256 PANTHER PTHR30028 1 254 6.1E-80 T 14-09-2016 PAJ_RS06705 98bd699349cc5e0f2c76865e666db34f 256 PANTHER PTHR30028:SF0 1 254 6.1E-80 T 14-09-2016 IPR005226 UPF0014 family PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 SUPERFAMILY SSF52943 2 288 2.65E-96 T 14-09-2016 IPR023633 ATPase, F1 complex, gamma subunit domain PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 Gene3D G3DSA:3.40.1380.10 63 191 8.5E-43 T 14-09-2016 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 Gene3D G3DSA:1.10.287.80 237 283 3.5E-30 T 14-09-2016 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 Gene3D G3DSA:1.10.287.80 19 60 2.3E-39 T 14-09-2016 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 Gene3D G3DSA:1.10.287.80 203 236 2.3E-39 T 14-09-2016 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 PRINTS PR00126 ATP synthase gamma subunit signature 235 254 5.8E-37 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 PRINTS PR00126 ATP synthase gamma subunit signature 266 287 5.8E-37 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 5.8E-37 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 5.8E-37 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 Pfam PF00231 ATP synthase 5 287 3.4E-91 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 PANTHER PTHR11693 1 288 9.1E-136 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 288 2.1E-111 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 274 287 - T 14-09-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site PAJ_RS17650 8f5f0e4a8c554c2f15b6ada4ecfae915 288 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 288 36.302 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PAJ_RS13045 b66bf99f578a0103db057375e67d005c 259 PANTHER PTHR11079 3 245 2.0E-88 T 14-09-2016 PAJ_RS13045 b66bf99f578a0103db057375e67d005c 259 Pfam PF00849 RNA pseudouridylate synthase 11 170 5.2E-27 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS13045 b66bf99f578a0103db057375e67d005c 259 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 14-09-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS13045 b66bf99f578a0103db057375e67d005c 259 SUPERFAMILY SSF55120 2 238 8.64E-60 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS13045 b66bf99f578a0103db057375e67d005c 259 PANTHER PTHR11079:SF60 3 245 2.0E-88 T 14-09-2016 PAJ_RS14055 bbee5a6a42b63103f3ea4c1dacd21263 386 PANTHER PTHR31686 23 386 2.6E-127 T 14-09-2016 PAJ_RS14055 bbee5a6a42b63103f3ea4c1dacd21263 386 Pfam PF03595 Voltage-dependent anion channel 27 365 1.3E-79 T 14-09-2016 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 PAJ_RS14055 bbee5a6a42b63103f3ea4c1dacd21263 386 PANTHER PTHR31686:SF1 23 386 2.6E-127 T 14-09-2016 PAJ_RS01045 9f9963ff04c3f3cccc5a38a7a388ef63 164 Gene3D G3DSA:1.10.3330.10 9 163 2.7E-44 T 14-09-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 PAJ_RS01045 9f9963ff04c3f3cccc5a38a7a388ef63 164 Pfam PF09349 OHCU decarboxylase 7 160 2.3E-39 T 14-09-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 PAJ_RS01045 9f9963ff04c3f3cccc5a38a7a388ef63 164 SUPERFAMILY SSF158694 2 161 1.02E-42 T 14-09-2016 PAJ_RS01045 9f9963ff04c3f3cccc5a38a7a388ef63 164 TIGRFAM TIGR03180 UraD_2: OHCU decarboxylase 6 161 6.6E-57 T 14-09-2016 IPR017595 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 2 PAJ_RS14770 d0e0b3f4c612c3dc63701b9422bbdf1c 67 Pfam PF05489 Phage Tail Protein X 1 57 1.6E-26 T 14-09-2016 IPR008861 Phage Tail Protein X-like PAJ_RS02645 d0a97d790aba034716671f8425a22182 66 Pfam PF10725 Protein of unknown function (DUF2517) 2 61 7.6E-37 T 14-09-2016 IPR019663 Uncharacterised protein YbfA PAJ_RS00485 e2a3993abf717f59130c142f20275680 422 PANTHER PTHR30304 140 419 1.0E-50 T 14-09-2016 PAJ_RS00485 e2a3993abf717f59130c142f20275680 422 PANTHER PTHR30304:SF3 140 419 1.0E-50 T 14-09-2016 PAJ_RS00485 e2a3993abf717f59130c142f20275680 422 Pfam PF07005 Putative sugar-binding N-terminal domain 4 226 4.6E-61 T 14-09-2016 IPR010737 Putative sugar-binding, N-terminal domain PAJ_RS00485 e2a3993abf717f59130c142f20275680 422 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 241 408 1.0E-38 T 14-09-2016 IPR031475 Putative nucleotide-binding C-terminal domain PAJ_RS00485 e2a3993abf717f59130c142f20275680 422 SUPERFAMILY SSF142764 4 415 2.88E-102 T 14-09-2016 PAJ_RS01485 cb8369aa70a8986d0487e6566800cca3 123 Pfam PF06519 TolA C-terminal 36 110 1.2E-7 T 14-09-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 PAJ_RS01485 cb8369aa70a8986d0487e6566800cca3 123 SUPERFAMILY SSF74653 40 116 3.73E-7 T 14-09-2016 PAJ_RS01485 cb8369aa70a8986d0487e6566800cca3 123 Gene3D G3DSA:3.30.1150.10 30 121 4.1E-17 T 14-09-2016 PAJ_RS08195 8cc8585e0d86994c28dfd2ddecd99894 455 PANTHER PTHR23521 2 417 1.8E-161 T 14-09-2016 PAJ_RS08195 8cc8585e0d86994c28dfd2ddecd99894 455 Gene3D G3DSA:1.20.1250.20 6 183 5.3E-14 T 14-09-2016 PAJ_RS08195 8cc8585e0d86994c28dfd2ddecd99894 455 Gene3D G3DSA:1.20.1250.20 203 378 2.9E-25 T 14-09-2016 PAJ_RS08195 8cc8585e0d86994c28dfd2ddecd99894 455 Pfam PF07690 Major Facilitator Superfamily 204 388 3.7E-20 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS08195 8cc8585e0d86994c28dfd2ddecd99894 455 PANTHER PTHR23521:SF2 2 417 1.8E-161 T 14-09-2016 PAJ_RS08195 8cc8585e0d86994c28dfd2ddecd99894 455 SUPERFAMILY SSF103473 6 379 4.58E-45 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS07220 61c710b1bec89972986dc125cd7a526d 238 PANTHER PTHR30151:SF23 36 234 3.4E-73 T 14-09-2016 PAJ_RS07220 61c710b1bec89972986dc125cd7a526d 238 Gene3D G3DSA:1.10.3720.10 38 225 8.5E-31 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07220 61c710b1bec89972986dc125cd7a526d 238 SUPERFAMILY SSF161098 39 225 3.01E-37 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07220 61c710b1bec89972986dc125cd7a526d 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 62 235 6.7E-25 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS07220 61c710b1bec89972986dc125cd7a526d 238 PANTHER PTHR30151 36 234 3.4E-73 T 14-09-2016 PAJ_RS18030 eaf4bfa253e7507092f084669c5ed3f4 186 Gene3D G3DSA:2.40.160.20 25 186 2.4E-33 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS18030 eaf4bfa253e7507092f084669c5ed3f4 186 PANTHER PTHR35892:SF1 1 186 1.0E-50 T 14-09-2016 PAJ_RS18030 eaf4bfa253e7507092f084669c5ed3f4 186 PANTHER PTHR35892 1 186 1.0E-50 T 14-09-2016 PAJ_RS18030 eaf4bfa253e7507092f084669c5ed3f4 186 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 143 164 2.3E-20 T 14-09-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PAJ_RS18030 eaf4bfa253e7507092f084669c5ed3f4 186 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 42 54 2.3E-20 T 14-09-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PAJ_RS18030 eaf4bfa253e7507092f084669c5ed3f4 186 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 88 111 2.3E-20 T 14-09-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PAJ_RS18030 eaf4bfa253e7507092f084669c5ed3f4 186 Pfam PF06316 Enterobacterial Ail/Lom protein 3 186 2.7E-23 T 14-09-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PAJ_RS18030 eaf4bfa253e7507092f084669c5ed3f4 186 SUPERFAMILY SSF56925 26 186 1.12E-22 T 14-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PAJ_RS19955 da45a85a55a24723d80ceba74b1cfb82 191 PIRSF PIRSF025550 18 190 7.6E-63 T 14-09-2016 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT PAJ_RS19955 da45a85a55a24723d80ceba74b1cfb82 191 Pfam PF02036 SCP-2 sterol transfer family 62 150 1.2E-17 T 14-09-2016 IPR003033 SCP2 sterol-binding domain PAJ_RS19955 da45a85a55a24723d80ceba74b1cfb82 191 PANTHER PTHR10094 18 161 3.4E-55 T 14-09-2016 PAJ_RS19955 da45a85a55a24723d80ceba74b1cfb82 191 SUPERFAMILY SSF55718 46 155 2.24E-20 T 14-09-2016 IPR003033 SCP2 sterol-binding domain PAJ_RS19955 da45a85a55a24723d80ceba74b1cfb82 191 PANTHER PTHR10094:SF16 18 161 3.4E-55 T 14-09-2016 PAJ_RS19955 da45a85a55a24723d80ceba74b1cfb82 191 Gene3D G3DSA:3.30.1050.10 78 152 5.3E-12 T 14-09-2016 IPR003033 SCP2 sterol-binding domain PAJ_RS02955 3f48590f353b7bc8939a05472f7c9221 383 Gene3D G3DSA:3.40.640.10 58 270 1.5E-78 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PAJ_RS02955 3f48590f353b7bc8939a05472f7c9221 383 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 20 378 8.7E-133 T 14-09-2016 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147|UniPathway: UPA00078 PAJ_RS02955 3f48590f353b7bc8939a05472f7c9221 383 Gene3D G3DSA:3.90.1150.10 271 380 1.9E-32 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PAJ_RS02955 3f48590f353b7bc8939a05472f7c9221 383 SUPERFAMILY SSF53383 3 380 6.05E-103 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase PAJ_RS02955 3f48590f353b7bc8939a05472f7c9221 383 PANTHER PTHR13693 4 382 3.5E-157 T 14-09-2016 PAJ_RS02955 3f48590f353b7bc8939a05472f7c9221 383 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 3 382 47.495 T 14-09-2016 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147|UniPathway: UPA00078 PAJ_RS02955 3f48590f353b7bc8939a05472f7c9221 383 Pfam PF00155 Aminotransferase class I and II 44 378 4.8E-57 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PAJ_RS02955 3f48590f353b7bc8939a05472f7c9221 383 PANTHER PTHR13693:SF53 4 382 3.5E-157 T 14-09-2016 PAJ_RS02955 3f48590f353b7bc8939a05472f7c9221 383 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 14-09-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 PAJ_RS03250 ecc09825e0544bb950b786e7da3b4e42 209 Gene3D G3DSA:2.30.110.10 13 187 4.2E-63 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PAJ_RS03250 ecc09825e0544bb950b786e7da3b4e42 209 SUPERFAMILY SSF50475 2 191 1.52E-46 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PAJ_RS03250 ecc09825e0544bb950b786e7da3b4e42 209 Pfam PF01613 Flavin reductase like domain 26 169 1.9E-14 T 14-09-2016 IPR002563 Flavin reductase like domain GO:0010181 PAJ_RS03250 ecc09825e0544bb950b786e7da3b4e42 209 PANTHER PTHR33798:SF4 2 208 2.0E-81 T 14-09-2016 PAJ_RS03250 ecc09825e0544bb950b786e7da3b4e42 209 PANTHER PTHR33798 2 208 2.0E-81 T 14-09-2016 PAJ_RS03250 ecc09825e0544bb950b786e7da3b4e42 209 SMART SM00903 24 175 3.4E-11 T 14-09-2016 IPR002563 Flavin reductase like domain GO:0010181 PAJ_RS02065 dc7c16fd3eb9c848ced4b6548c012371 480 Pfam PF14264 Glucosyl transferase GtrII 23 323 2.4E-29 T 14-09-2016 IPR025686 Glucosyl transferase II PAJ_RS01480 d525fdfd640d533c8a6af89f5da20afa 301 PANTHER PTHR18964 3 299 1.3E-90 T 14-09-2016 PAJ_RS01480 d525fdfd640d533c8a6af89f5da20afa 301 SUPERFAMILY SSF53067 3 299 1.2E-59 T 14-09-2016 PAJ_RS01480 d525fdfd640d533c8a6af89f5da20afa 301 Gene3D G3DSA:3.30.420.40 132 281 2.3E-44 T 14-09-2016 PAJ_RS01480 d525fdfd640d533c8a6af89f5da20afa 301 Pfam PF00480 ROK family 3 300 2.7E-85 T 14-09-2016 IPR000600 ROK family PAJ_RS01480 d525fdfd640d533c8a6af89f5da20afa 301 Gene3D G3DSA:3.30.420.40 2 131 8.1E-35 T 14-09-2016 PAJ_RS01480 d525fdfd640d533c8a6af89f5da20afa 301 PANTHER PTHR18964:SF123 3 299 1.3E-90 T 14-09-2016 PAJ_RS20145 2957e275656c839ff680429df36030ec 260 Pfam PF00005 ABC transporter 26 180 1.3E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS20145 2957e275656c839ff680429df36030ec 260 Gene3D G3DSA:3.40.50.300 10 235 1.3E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20145 2957e275656c839ff680429df36030ec 260 SMART SM00382 35 228 5.2E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS20145 2957e275656c839ff680429df36030ec 260 PANTHER PTHR24220 12 248 2.5E-77 T 14-09-2016 PAJ_RS20145 2957e275656c839ff680429df36030ec 260 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS20145 2957e275656c839ff680429df36030ec 260 SUPERFAMILY SSF52540 11 235 1.01E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20145 2957e275656c839ff680429df36030ec 260 PANTHER PTHR24220:SF575 12 248 2.5E-77 T 14-09-2016 PAJ_RS12470 17e993f40652762a25279d5b484b7a49 181 SUPERFAMILY SSF55729 3 160 1.72E-41 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS12470 17e993f40652762a25279d5b484b7a49 181 PANTHER PTHR13256:SF21 3 176 3.5E-75 T 14-09-2016 PAJ_RS12470 17e993f40652762a25279d5b484b7a49 181 Pfam PF13302 Acetyltransferase (GNAT) domain 3 137 1.7E-21 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS12470 17e993f40652762a25279d5b484b7a49 181 Gene3D G3DSA:3.40.630.30 3 162 6.4E-44 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS12470 17e993f40652762a25279d5b484b7a49 181 PANTHER PTHR13256 3 176 3.5E-75 T 14-09-2016 PAJ_RS17315 e4eb73fd843729537c94de8451bc7f58 198 PANTHER PTHR30055 1 193 5.7E-117 T 14-09-2016 PAJ_RS17315 e4eb73fd843729537c94de8451bc7f58 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 61 1.5E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS17315 e4eb73fd843729537c94de8451bc7f58 198 PANTHER PTHR30055:SF58 1 193 5.7E-117 T 14-09-2016 PAJ_RS17315 e4eb73fd843729537c94de8451bc7f58 198 SUPERFAMILY SSF46689 10 73 1.25E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS17315 e4eb73fd843729537c94de8451bc7f58 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 198 40.844 T 14-09-2016 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 PAJ_RS17315 e4eb73fd843729537c94de8451bc7f58 198 SUPERFAMILY SSF48498 85 193 5.66E-7 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PAJ_RS17315 e4eb73fd843729537c94de8451bc7f58 198 Gene3D G3DSA:1.10.357.10 8 189 7.3E-36 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS17315 e4eb73fd843729537c94de8451bc7f58 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 14-09-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PAJ_RS13220 c6bdcf4c0101f34ee717900bf8cfaace 346 SUPERFAMILY SSF51430 1 345 7.2E-107 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS13220 c6bdcf4c0101f34ee717900bf8cfaace 346 PANTHER PTHR11732:SF112 1 139 1.3E-209 T 14-09-2016 PAJ_RS13220 c6bdcf4c0101f34ee717900bf8cfaace 346 PANTHER PTHR11732:SF112 157 346 1.3E-209 T 14-09-2016 PAJ_RS13220 c6bdcf4c0101f34ee717900bf8cfaace 346 Gene3D G3DSA:3.20.20.100 1 344 2.2E-107 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS13220 c6bdcf4c0101f34ee717900bf8cfaace 346 PANTHER PTHR11732 1 139 1.3E-209 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PAJ_RS13220 c6bdcf4c0101f34ee717900bf8cfaace 346 PANTHER PTHR11732 157 346 1.3E-209 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PAJ_RS13220 c6bdcf4c0101f34ee717900bf8cfaace 346 Pfam PF00248 Aldo/keto reductase family 16 337 1.1E-73 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS01840 d5b92e1a427ad751758635980b2fe03d 84 Pfam PF01197 Ribosomal protein L31 1 78 5.6E-22 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS01840 d5b92e1a427ad751758635980b2fe03d 84 PANTHER PTHR33280 1 81 6.5E-39 T 14-09-2016 PAJ_RS01840 d5b92e1a427ad751758635980b2fe03d 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 1.4E-15 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS01840 d5b92e1a427ad751758635980b2fe03d 84 PANTHER PTHR33280:SF3 1 81 6.5E-39 T 14-09-2016 PAJ_RS01840 d5b92e1a427ad751758635980b2fe03d 84 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 25.128 T 14-09-2016 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS01840 d5b92e1a427ad751758635980b2fe03d 84 SUPERFAMILY SSF143800 1 80 3.14E-19 T 14-09-2016 PAJ_RS01840 d5b92e1a427ad751758635980b2fe03d 84 PRINTS PR01249 Ribosomal protein L31 signature 44 59 7.1E-13 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS01840 d5b92e1a427ad751758635980b2fe03d 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 7.1E-13 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS01840 d5b92e1a427ad751758635980b2fe03d 84 PRINTS PR01249 Ribosomal protein L31 signature 59 77 7.1E-13 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS00945 983b5c17896ae614438fb6d121d85da9 290 SUPERFAMILY SSF51197 3 249 1.56E-53 T 14-09-2016 PAJ_RS00945 983b5c17896ae614438fb6d121d85da9 290 PANTHER PTHR20883 6 243 1.7E-32 T 14-09-2016 PAJ_RS00945 983b5c17896ae614438fb6d121d85da9 290 Gene3D G3DSA:2.60.120.620 4 246 1.1E-49 T 14-09-2016 PAJ_RS00945 983b5c17896ae614438fb6d121d85da9 290 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 10 224 7.5E-26 T 14-09-2016 IPR008775 Phytanoyl-CoA dioxygenase PAJ_RS06670 f0fce61f8fe5a610298cc7022fd18183 323 PANTHER PTHR32196:SF21 1 321 2.6E-103 T 14-09-2016 PAJ_RS06670 f0fce61f8fe5a610298cc7022fd18183 323 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 314 2.3E-48 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS06670 f0fce61f8fe5a610298cc7022fd18183 323 PANTHER PTHR32196 1 321 2.6E-103 T 14-09-2016 PAJ_RS00355 bab1d89697e562170e99ebbd12608a84 305 Gene3D G3DSA:3.30.230.20 3 125 4.1E-45 T 14-09-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 PAJ_RS00355 bab1d89697e562170e99ebbd12608a84 305 PANTHER PTHR33694:SF1 1 305 8.6E-142 T 14-09-2016 PAJ_RS00355 bab1d89697e562170e99ebbd12608a84 305 SUPERFAMILY SSF54211 134 278 3.26E-52 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS00355 bab1d89697e562170e99ebbd12608a84 305 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 300 1.4E-156 T 14-09-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 PAJ_RS00355 bab1d89697e562170e99ebbd12608a84 305 SUPERFAMILY SSF54211 3 124 1.74E-41 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PAJ_RS00355 bab1d89697e562170e99ebbd12608a84 305 Gene3D G3DSA:3.30.1700.10 129 283 1.6E-61 T 14-09-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 PAJ_RS00355 bab1d89697e562170e99ebbd12608a84 305 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 276 1.1E-107 T 14-09-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 PAJ_RS00355 bab1d89697e562170e99ebbd12608a84 305 PANTHER PTHR33694 1 305 8.6E-142 T 14-09-2016 PAJ_RS00355 bab1d89697e562170e99ebbd12608a84 305 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 2 281 49.136 T 14-09-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 PAJ_RS04675 8ec420efd4adac8f9045f6ac5857d0ee 374 Gene3D G3DSA:2.60.120.650 6 205 8.1E-46 T 14-09-2016 PAJ_RS04675 8ec420efd4adac8f9045f6ac5857d0ee 374 PANTHER PTHR13096 7 324 1.1E-68 T 14-09-2016 PAJ_RS04675 8ec420efd4adac8f9045f6ac5857d0ee 374 SUPERFAMILY SSF51197 7 292 8.79E-75 T 14-09-2016 PAJ_RS04675 8ec420efd4adac8f9045f6ac5857d0ee 374 Pfam PF08007 Cupin superfamily protein 10 310 2.4E-102 T 14-09-2016 IPR003347 JmjC domain PAJ_RS04675 8ec420efd4adac8f9045f6ac5857d0ee 374 SMART SM00558 92 215 1.8E-9 T 14-09-2016 IPR003347 JmjC domain PAJ_RS17435 875a28439e463ac8744ab5c981b5a8bd 289 PIRSF PIRSF035875 3 289 3.2E-64 T 14-09-2016 IPR017039 Virulence factor BrkB PAJ_RS17435 875a28439e463ac8744ab5c981b5a8bd 289 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 1 280 23.58 T 14-09-2016 IPR023679 Uncharacterised protein family UPF0761, bacterial PAJ_RS17435 875a28439e463ac8744ab5c981b5a8bd 289 Pfam PF03631 Virulence factor BrkB 27 273 2.9E-56 T 14-09-2016 IPR017039 Virulence factor BrkB PAJ_RS17435 875a28439e463ac8744ab5c981b5a8bd 289 PANTHER PTHR30213:SF0 10 287 1.4E-107 T 14-09-2016 PAJ_RS17435 875a28439e463ac8744ab5c981b5a8bd 289 PANTHER PTHR30213 10 287 1.4E-107 T 14-09-2016 PAJ_RS17435 875a28439e463ac8744ab5c981b5a8bd 289 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 16 274 1.5E-93 T 14-09-2016 IPR017039 Virulence factor BrkB PAJ_RS04275 b2a47439b864ed9354ff84e735190e4a 135 Pfam PF09391 Protein of unknown function (DUF2000) 5 134 3.3E-39 T 14-09-2016 IPR018988 Protein of unknown function DUF2000 PAJ_RS04275 b2a47439b864ed9354ff84e735190e4a 135 SUPERFAMILY SSF102462 2 134 5.75E-29 T 14-09-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 PAJ_RS04275 b2a47439b864ed9354ff84e735190e4a 135 PIRSF PIRSF033736 1 135 2.0E-25 T 14-09-2016 IPR017021 Uncharacterised conserved protein UCP033763 PAJ_RS04275 b2a47439b864ed9354ff84e735190e4a 135 Gene3D G3DSA:3.40.1490.10 3 134 4.9E-30 T 14-09-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 PAJ_RS10460 01851b40ae500bfcd62a44dd8de7dc39 346 PIRSF PIRSF006268 1 343 6.9E-90 T 14-09-2016 IPR024932 Flavin transferase ApbE GO:0017013 PAJ_RS10460 01851b40ae500bfcd62a44dd8de7dc39 346 Pfam PF02424 ApbE family 38 320 2.1E-79 T 14-09-2016 IPR024932 Flavin transferase ApbE GO:0017013 PAJ_RS10460 01851b40ae500bfcd62a44dd8de7dc39 346 SUPERFAMILY SSF143631 32 342 1.05E-91 T 14-09-2016 IPR003374 ApbE-like domain PAJ_RS10460 01851b40ae500bfcd62a44dd8de7dc39 346 PANTHER PTHR30040:SF3 1 346 1.5E-159 T 14-09-2016 PAJ_RS10460 01851b40ae500bfcd62a44dd8de7dc39 346 PANTHER PTHR30040 1 346 1.5E-159 T 14-09-2016 PAJ_RS15760 a4a9c644df247ecee623126ce8e95ee2 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.494 T 14-09-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 PAJ_RS15760 a4a9c644df247ecee623126ce8e95ee2 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 1.2E-31 T 14-09-2016 IPR021131 Ribosomal protein L18e/L15P PAJ_RS15760 a4a9c644df247ecee623126ce8e95ee2 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 2.4E-51 T 14-09-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 PAJ_RS15760 a4a9c644df247ecee623126ce8e95ee2 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 14-09-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PAJ_RS15760 a4a9c644df247ecee623126ce8e95ee2 144 Gene3D G3DSA:3.100.10.10 32 143 4.5E-27 T 14-09-2016 PAJ_RS15760 a4a9c644df247ecee623126ce8e95ee2 144 SUPERFAMILY SSF52080 4 143 6.54E-47 T 14-09-2016 IPR021131 Ribosomal protein L18e/L15P PAJ_RS15760 a4a9c644df247ecee623126ce8e95ee2 144 PANTHER PTHR12934 1 144 5.7E-73 T 14-09-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 PAJ_RS17490 bddbfc0162a366c45faa5acbd11a4525 328 PANTHER PTHR39573:SF1 2 328 7.3E-175 T 14-09-2016 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 PAJ_RS17490 bddbfc0162a366c45faa5acbd11a4525 328 Gene3D G3DSA:3.90.1200.10 106 326 4.6E-44 T 14-09-2016 PAJ_RS17490 bddbfc0162a366c45faa5acbd11a4525 328 Pfam PF01636 Phosphotransferase enzyme family 33 253 1.3E-42 T 14-09-2016 IPR002575 Aminoglycoside phosphotransferase PAJ_RS17490 bddbfc0162a366c45faa5acbd11a4525 328 SUPERFAMILY SSF56112 6 326 3.32E-88 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS17490 bddbfc0162a366c45faa5acbd11a4525 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 44.901 T 14-09-2016 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 PAJ_RS17490 bddbfc0162a366c45faa5acbd11a4525 328 PANTHER PTHR39573 2 328 7.3E-175 T 14-09-2016 PAJ_RS00820 a980fbbd40082a9abd5443d9a3d9e404 132 Pfam PF16358 RcsF lipoprotein 30 130 1.0E-48 T 14-09-2016 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 PAJ_RS00820 a980fbbd40082a9abd5443d9a3d9e404 132 Hamap MF_00976 Outer membrane lipoprotein RcsF [rcsF]. 1 131 33.521 T 14-09-2016 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 PAJ_RS10660 92365424ae962ba8e0158bf9894429a7 149 Pfam PF04217 Protein of unknown function, DUF412 9 147 5.3E-61 T 14-09-2016 IPR007334 Uncharacterised protein family UPF0208 PAJ_RS10660 92365424ae962ba8e0158bf9894429a7 149 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 7 149 36.267 T 14-09-2016 IPR007334 Uncharacterised protein family UPF0208 PAJ_RS02610 6b503d4170aee402e005a3e9b2244305 147 SUPERFAMILY SSF46785 6 134 9.09E-44 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02610 6b503d4170aee402e005a3e9b2244305 147 PANTHER PTHR33202 7 142 2.9E-46 T 14-09-2016 PAJ_RS02610 6b503d4170aee402e005a3e9b2244305 147 Gene3D G3DSA:1.10.10.10 3 82 2.7E-30 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02610 6b503d4170aee402e005a3e9b2244305 147 Pfam PF01475 Ferric uptake regulator family 10 130 1.6E-47 T 14-09-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 PAJ_RS02485 caab8acb7936be6c531ebdf40ede254f 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS02485 caab8acb7936be6c531ebdf40ede254f 241 Gene3D G3DSA:3.40.50.300 1 236 1.1E-79 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02485 caab8acb7936be6c531ebdf40ede254f 241 PANTHER PTHR24220 3 240 1.8E-185 T 14-09-2016 PAJ_RS02485 caab8acb7936be6c531ebdf40ede254f 241 SMART SM00382 26 213 4.4E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS02485 caab8acb7936be6c531ebdf40ede254f 241 SUPERFAMILY SSF52540 1 235 1.33E-76 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02485 caab8acb7936be6c531ebdf40ede254f 241 Pfam PF00005 ABC transporter 17 165 1.1E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS02485 caab8acb7936be6c531ebdf40ede254f 241 PANTHER PTHR24220:SF317 3 240 1.8E-185 T 14-09-2016 IPR030206 Glutamate/aspartate transport ATP-binding protein GltL/AatP GO:0005524|GO:0006865|GO:0043190 PAJ_RS02485 caab8acb7936be6c531ebdf40ede254f 241 PIRSF PIRSF039085 1 241 5.0E-105 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PAJ_RS11220 07878ed103493bf6be644b58686a5271 87 SUPERFAMILY SSF46689 1 68 1.65E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS11220 07878ed103493bf6be644b58686a5271 87 PANTHER PTHR33609 1 87 8.0E-38 T 14-09-2016 PAJ_RS11220 07878ed103493bf6be644b58686a5271 87 Pfam PF01527 Transposase 2 70 1.1E-22 T 14-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PAJ_RS11220 07878ed103493bf6be644b58686a5271 87 Gene3D G3DSA:1.10.10.60 7 82 2.9E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS03420 3fd708755e47af9d481cf4c16bce59b1 85 Pfam PF07214 Protein of unknown function (DUF1418) 1 78 3.4E-18 T 14-09-2016 IPR010815 Protein of unknown function DUF1418 PAJ_RS18440 442d3866e560be8038a27bbdc76e5f99 156 SUPERFAMILY SSF54637 12 154 2.82E-26 T 14-09-2016 IPR029069 HotDog domain PAJ_RS18440 442d3866e560be8038a27bbdc76e5f99 156 PANTHER PTHR12418 8 154 3.7E-72 T 14-09-2016 PAJ_RS18440 442d3866e560be8038a27bbdc76e5f99 156 Pfam PF03061 Thioesterase superfamily 58 146 2.1E-18 T 14-09-2016 IPR006683 Thioesterase domain PAJ_RS18440 442d3866e560be8038a27bbdc76e5f99 156 Gene3D G3DSA:3.10.129.10 19 154 3.3E-31 T 14-09-2016 IPR029069 HotDog domain PAJ_RS18440 442d3866e560be8038a27bbdc76e5f99 156 PANTHER PTHR12418:SF35 8 154 3.7E-72 T 14-09-2016 PAJ_RS18440 442d3866e560be8038a27bbdc76e5f99 156 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 25 154 1.4E-15 T 14-09-2016 IPR003736 Phenylacetic acid degradation-related domain PAJ_RS20330 dad97b5de7d261c3524747975a7d7548 498 Gene3D G3DSA:3.40.50.980 8 175 3.4E-8 T 14-09-2016 PAJ_RS20330 dad97b5de7d261c3524747975a7d7548 498 PANTHER PTHR24096:SF232 165 401 4.4E-22 T 14-09-2016 PAJ_RS20330 dad97b5de7d261c3524747975a7d7548 498 PANTHER PTHR24096 165 401 4.4E-22 T 14-09-2016 PAJ_RS20330 dad97b5de7d261c3524747975a7d7548 498 Gene3D G3DSA:3.40.50.980 191 315 8.3E-17 T 14-09-2016 PAJ_RS20330 dad97b5de7d261c3524747975a7d7548 498 Gene3D G3DSA:2.30.38.10 323 395 6.0E-9 T 14-09-2016 PAJ_RS20330 dad97b5de7d261c3524747975a7d7548 498 Pfam PF00501 AMP-binding enzyme 16 401 2.2E-33 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PAJ_RS20330 dad97b5de7d261c3524747975a7d7548 498 SUPERFAMILY SSF56801 7 493 3.53E-56 T 14-09-2016 PAJ_RS00480 41273d9e5458de02ff34da89f692e677 329 Pfam PF03812 2-keto-3-deoxygluconate permease 14 316 1.7E-113 T 14-09-2016 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 PAJ_RS00480 41273d9e5458de02ff34da89f692e677 329 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 25 322 3.0E-88 T 14-09-2016 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 PAJ_RS10410 f4f9e45e9026e6f7b6ca3fdde72f21a3 318 PANTHER PTHR30273:SF3 4 317 2.6E-65 T 14-09-2016 PAJ_RS10410 f4f9e45e9026e6f7b6ca3fdde72f21a3 318 PIRSF PIRSF018266 1 316 2.3E-70 T 14-09-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PAJ_RS10410 f4f9e45e9026e6f7b6ca3fdde72f21a3 318 PANTHER PTHR30273 4 317 2.6E-65 T 14-09-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PAJ_RS10410 f4f9e45e9026e6f7b6ca3fdde72f21a3 318 Pfam PF04773 FecR protein 115 203 2.4E-13 T 14-09-2016 IPR006860 FecR protein PAJ_RS10410 f4f9e45e9026e6f7b6ca3fdde72f21a3 318 Pfam PF16220 Domain of unknown function (DUF4880) 12 53 5.3E-12 T 14-09-2016 IPR032623 FecR, N-terminal PAJ_RS05270 057f9bf77d1abd8a65036b31e2bfd7be 145 Gene3D G3DSA:3.10.180.10 1 143 2.0E-35 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS05270 057f9bf77d1abd8a65036b31e2bfd7be 145 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 113 3.1E-11 T 14-09-2016 PAJ_RS05270 057f9bf77d1abd8a65036b31e2bfd7be 145 SUPERFAMILY SSF54593 1 143 5.5E-21 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS20640 cee4b9042c61a6f0ffa604523ceef1e7 235 PANTHER PTHR13256 9 223 1.2E-88 T 14-09-2016 PAJ_RS20640 cee4b9042c61a6f0ffa604523ceef1e7 235 PANTHER PTHR13256:SF22 9 223 1.2E-88 T 14-09-2016 PAJ_RS20640 cee4b9042c61a6f0ffa604523ceef1e7 235 Gene3D G3DSA:3.40.630.30 16 216 5.2E-58 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS20640 cee4b9042c61a6f0ffa604523ceef1e7 235 Pfam PF13302 Acetyltransferase (GNAT) domain 37 176 8.8E-15 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS20640 cee4b9042c61a6f0ffa604523ceef1e7 235 SUPERFAMILY SSF55729 27 200 4.21E-36 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 PANTHER PTHR11544 1 74 1.3E-46 T 14-09-2016 PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 PRINTS PR00050 Cold shock protein signature 25 34 6.8E-16 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 PRINTS PR00050 Cold shock protein signature 4 19 6.8E-16 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 PRINTS PR00050 Cold shock protein signature 40 58 6.8E-16 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 PANTHER PTHR11544:SF52 1 74 1.3E-46 T 14-09-2016 PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 14-09-2016 IPR019844 Cold-shock conserved site PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 PIRSF PIRSF002599 1 74 5.0E-23 T 14-09-2016 IPR012156 Cold shock, CspA GO:0003676 PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 SMART SM00357 3 67 2.9E-27 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 SUPERFAMILY SSF50249 1 66 7.1E-23 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 68 2.2E-41 T 14-09-2016 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355|GO:0006950 PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 8.4E-28 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS03530 2b5fc914d99e9cdffbcb4413f98179da 74 Gene3D G3DSA:2.40.50.140 1 64 5.3E-29 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS02890 6d963dd2d266619b92034cbb5bd36b5e 344 PANTHER PTHR10091 1 344 1.1E-131 T 14-09-2016 PAJ_RS02890 6d963dd2d266619b92034cbb5bd36b5e 344 Pfam PF01263 Aldose 1-epimerase 19 340 4.8E-83 T 14-09-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 PAJ_RS02890 6d963dd2d266619b92034cbb5bd36b5e 344 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 12 341 3.4E-134 T 14-09-2016 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317|UniPathway: UPA00242 PAJ_RS02890 6d963dd2d266619b92034cbb5bd36b5e 344 PIRSF PIRSF005096 2 344 5.4E-115 T 14-09-2016 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317|UniPathway: UPA00242 PAJ_RS02890 6d963dd2d266619b92034cbb5bd36b5e 344 PANTHER PTHR10091:SF0 1 344 1.1E-131 T 14-09-2016 PAJ_RS02890 6d963dd2d266619b92034cbb5bd36b5e 344 SUPERFAMILY SSF74650 8 341 3.77E-103 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS02890 6d963dd2d266619b92034cbb5bd36b5e 344 Gene3D G3DSA:2.70.98.10 9 342 7.2E-113 T 14-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PAJ_RS02640 15429453a5aed38311cd04e5ef6ab766 224 Gene3D G3DSA:3.40.50.2300 3 124 1.0E-34 T 14-09-2016 PAJ_RS02640 15429453a5aed38311cd04e5ef6ab766 224 Gene3D G3DSA:1.10.10.10 125 223 4.7E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS02640 15429453a5aed38311cd04e5ef6ab766 224 PANTHER PTHR26402 2 224 4.3E-105 T 14-09-2016 PAJ_RS02640 15429453a5aed38311cd04e5ef6ab766 224 Pfam PF00072 Response regulator receiver domain 4 113 4.8E-26 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS02640 15429453a5aed38311cd04e5ef6ab766 224 SMART SM00862 146 222 2.6E-21 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS02640 15429453a5aed38311cd04e5ef6ab766 224 SUPERFAMILY SSF52172 3 172 7.09E-37 T 14-09-2016 IPR011006 CheY-like superfamily PAJ_RS02640 15429453a5aed38311cd04e5ef6ab766 224 SMART SM00448 2 112 2.9E-34 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PAJ_RS02640 15429453a5aed38311cd04e5ef6ab766 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 222 1.7E-21 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS02640 15429453a5aed38311cd04e5ef6ab766 224 PANTHER PTHR26402:SF399 2 224 4.3E-105 T 14-09-2016 PAJ_RS16820 13b84e2400c5c9ecb55039ace517da52 443 PANTHER PTHR23508 5 442 2.7E-229 T 14-09-2016 PAJ_RS16820 13b84e2400c5c9ecb55039ace517da52 443 Pfam PF00083 Sugar (and other) transporter 25 234 8.6E-25 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PAJ_RS16820 13b84e2400c5c9ecb55039ace517da52 443 SUPERFAMILY SSF103473 15 441 5.89E-66 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS16820 13b84e2400c5c9ecb55039ace517da52 443 Pfam PF07690 Major Facilitator Superfamily 284 437 4.3E-14 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS16820 13b84e2400c5c9ecb55039ace517da52 443 PANTHER PTHR23508:SF16 5 442 2.7E-229 T 14-09-2016 PAJ_RS16820 13b84e2400c5c9ecb55039ace517da52 443 ProSitePatterns PS00216 Sugar transport proteins signature 1. 309 326 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PAJ_RS16820 13b84e2400c5c9ecb55039ace517da52 443 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 31 426 9.8E-151 T 14-09-2016 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 PAJ_RS16820 13b84e2400c5c9ecb55039ace517da52 443 Gene3D G3DSA:1.20.1250.20 21 233 8.7E-24 T 14-09-2016 PAJ_RS16820 13b84e2400c5c9ecb55039ace517da52 443 Gene3D G3DSA:1.20.1250.20 250 438 1.8E-17 T 14-09-2016 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 PANTHER PTHR10961:SF7 3 371 1.3E-110 T 14-09-2016 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 Gene3D G3DSA:3.50.50.60 146 208 6.8E-49 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 Gene3D G3DSA:3.50.50.60 316 371 6.8E-49 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 Gene3D G3DSA:3.50.50.60 2 57 6.8E-49 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 PANTHER PTHR10961 3 371 1.3E-110 T 14-09-2016 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 Pfam PF01266 FAD dependent oxidoreductase 4 350 4.1E-44 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 SUPERFAMILY SSF51905 3 216 2.12E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 SUPERFAMILY SSF51905 313 370 2.12E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 SUPERFAMILY SSF54373 213 313 1.22E-16 T 14-09-2016 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 Hamap MF_00515 N-methyl-L-tryptophan oxidase [solA]. 1 371 74.705 T 14-09-2016 IPR023493 N-methyl-L-tryptophan oxidase MTOX GO:0050131|GO:0050660|GO:0055114 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 Gene3D G3DSA:3.30.9.10 60 145 2.9E-56 T 14-09-2016 PAJ_RS04380 5483a23e91b47c9e9593f4a84cb696b4 371 Gene3D G3DSA:3.30.9.10 211 313 2.9E-56 T 14-09-2016 PAJ_RS02175 3ed58f59e4871d4dd749594a1167d7ce 145 Pfam PF08786 Domain of unknown function (DUF1795) 12 140 2.4E-36 T 14-09-2016 IPR014894 Protein DcrB PAJ_RS02175 3ed58f59e4871d4dd749594a1167d7ce 145 SUPERFAMILY SSF55724 7 144 9.42E-34 T 14-09-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich PAJ_RS02175 3ed58f59e4871d4dd749594a1167d7ce 145 Gene3D G3DSA:3.40.1000.10 7 144 1.3E-45 T 14-09-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich PAJ_RS16115 b9ed2c7d34fd55d2c0bd216d35555ac5 711 Pfam PF07095 Intracellular growth attenuator protein IgaA 1 703 0.0 T 14-09-2016 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 PAJ_RS16115 b9ed2c7d34fd55d2c0bd216d35555ac5 711 ProDom PD147088 MEMBRANE INNER TRANSMEMBRANE IGAA HOMOLOG DEHYDROGENASE GROWTH ATTENUATOR INTRACELLULAR GENOME 1 697 0.0 T 14-09-2016 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 PAJ_RS15000 ceb04b1885d0ecbbf14398fc83785297 224 PANTHER PTHR30353:SF11 1 217 5.8E-156 T 14-09-2016 PAJ_RS15000 ceb04b1885d0ecbbf14398fc83785297 224 Pfam PF09335 SNARE associated Golgi protein 48 172 2.0E-20 T 14-09-2016 IPR032816 SNARE associated Golgi protein PAJ_RS15000 ceb04b1885d0ecbbf14398fc83785297 224 PANTHER PTHR30353 1 217 5.8E-156 T 14-09-2016 IPR032818 DedA family PAJ_RS17740 cd141483067c521050dba391be003155 145 PANTHER PTHR10545:SF39 2 134 2.8E-36 T 14-09-2016 IPR032962 Acetyltransferase HPA2/HPA3 GO:0016746 PAJ_RS17740 cd141483067c521050dba391be003155 145 Gene3D G3DSA:3.40.630.30 4 132 1.4E-32 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS17740 cd141483067c521050dba391be003155 145 Pfam PF00583 Acetyltransferase (GNAT) family 54 132 2.3E-13 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS17740 cd141483067c521050dba391be003155 145 PANTHER PTHR10545 2 134 2.8E-36 T 14-09-2016 PAJ_RS17740 cd141483067c521050dba391be003155 145 SUPERFAMILY SSF55729 2 132 1.39E-29 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS03465 2140a72d39925579915f2029afad8290 380 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 1 374 77.991 T 14-09-2016 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 PAJ_RS03465 2140a72d39925579915f2029afad8290 380 PANTHER PTHR11061:SF36 8 378 2.4E-237 T 14-09-2016 PAJ_RS03465 2140a72d39925579915f2029afad8290 380 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 21 373 2.2E-19 T 14-09-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 PAJ_RS03465 2140a72d39925579915f2029afad8290 380 Gene3D G3DSA:3.40.50.150 180 373 9.6E-50 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03465 2140a72d39925579915f2029afad8290 380 SUPERFAMILY SSF53335 3 373 1.08E-54 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS03465 2140a72d39925579915f2029afad8290 380 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 3 366 3.5E-58 T 14-09-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 PAJ_RS03465 2140a72d39925579915f2029afad8290 380 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 306 337 - T 14-09-2016 IPR030390 RNA methyltransferase TrmA, active site PAJ_RS03465 2140a72d39925579915f2029afad8290 380 PANTHER PTHR11061 8 378 2.4E-237 T 14-09-2016 PAJ_RS03465 2140a72d39925579915f2029afad8290 380 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 2 373 8.9E-199 T 14-09-2016 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 PAJ_RS03465 2140a72d39925579915f2029afad8290 380 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 356 366 - T 14-09-2016 IPR030391 RNA methyltransferase TrmA, conserved site PAJ_RS02020 39d64a7ec228d2fd229bd2b6f13b68d3 368 Pfam PF13175 AAA ATPase domain 1 47 3.5E-10 T 14-09-2016 PAJ_RS02020 39d64a7ec228d2fd229bd2b6f13b68d3 368 PIRSF PIRSF029347 1 368 3.3E-138 T 14-09-2016 IPR014555 RecF-like PAJ_RS02020 39d64a7ec228d2fd229bd2b6f13b68d3 368 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 269 338 1.4E-16 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PAJ_RS02020 39d64a7ec228d2fd229bd2b6f13b68d3 368 PANTHER PTHR32182 1 366 1.9E-37 T 14-09-2016 PAJ_RS02020 39d64a7ec228d2fd229bd2b6f13b68d3 368 Gene3D G3DSA:3.40.50.300 1 187 2.7E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02020 39d64a7ec228d2fd229bd2b6f13b68d3 368 Gene3D G3DSA:3.40.50.300 236 347 2.7E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02020 39d64a7ec228d2fd229bd2b6f13b68d3 368 PANTHER PTHR32182:SF13 1 366 1.9E-37 T 14-09-2016 PAJ_RS02020 39d64a7ec228d2fd229bd2b6f13b68d3 368 SUPERFAMILY SSF52540 1 192 5.69E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02020 39d64a7ec228d2fd229bd2b6f13b68d3 368 SUPERFAMILY SSF52540 242 348 5.69E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS19440 2d9d78cd68ef049c7780cf2569890aa3 155 PANTHER PTHR34986 2 155 2.5E-47 T 14-09-2016 PAJ_RS19440 2d9d78cd68ef049c7780cf2569890aa3 155 Pfam PF04074 Domain of unknown function (DUF386) 1 150 3.9E-40 T 14-09-2016 IPR004375 YhcH/YjgK/YiaL family PAJ_RS19440 2d9d78cd68ef049c7780cf2569890aa3 155 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 150 3.4E-37 T 14-09-2016 IPR004375 YhcH/YjgK/YiaL family PAJ_RS19440 2d9d78cd68ef049c7780cf2569890aa3 155 Gene3D G3DSA:2.60.120.370 1 150 1.5E-46 T 14-09-2016 IPR004375 YhcH/YjgK/YiaL family PAJ_RS19440 2d9d78cd68ef049c7780cf2569890aa3 155 SUPERFAMILY SSF51197 1 151 1.07E-41 T 14-09-2016 PAJ_RS00310 8093c990088c8044bffd61a668180387 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 1.4E-160 T 14-09-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00310 8093c990088c8044bffd61a668180387 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 14-09-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00310 8093c990088c8044bffd61a668180387 360 Pfam PF00953 Glycosyl transferase family 4 99 284 1.6E-34 T 14-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00310 8093c990088c8044bffd61a668180387 360 PANTHER PTHR22926:SF5 2 360 8.8E-195 T 14-09-2016 PAJ_RS00310 8093c990088c8044bffd61a668180387 360 PANTHER PTHR22926 2 360 8.8E-195 T 14-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00310 8093c990088c8044bffd61a668180387 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 1.0E-5 T 14-09-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00310 8093c990088c8044bffd61a668180387 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.834 T 14-09-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS00310 8093c990088c8044bffd61a668180387 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 14-09-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PAJ_RS18245 422995170071692206b5432ba81cd7e9 685 PANTHER PTHR30441 1 683 4.2E-155 T 14-09-2016 PAJ_RS18245 422995170071692206b5432ba81cd7e9 685 Pfam PF05170 AsmA family 1 580 7.1E-153 T 14-09-2016 IPR007844 AsmA PAJ_RS18245 422995170071692206b5432ba81cd7e9 685 PANTHER PTHR30441:SF2 1 683 4.2E-155 T 14-09-2016 PAJ_RS03410 09d046a0adeb9bb76645e0b5aae4e77c 121 Pfam PF11045 Putative inner membrane protein of Enterobacteriaceae 7 116 4.1E-22 T 14-09-2016 IPR020368 Uncharacterised protein family YbjM GO:0016021 PAJ_RS18520 b18878e5493c0612645f8816b7df0892 201 Pfam PF02036 SCP-2 sterol transfer family 15 113 4.8E-21 T 14-09-2016 IPR003033 SCP2 sterol-binding domain PAJ_RS18520 b18878e5493c0612645f8816b7df0892 201 SUPERFAMILY SSF55718 10 116 4.41E-9 T 14-09-2016 IPR003033 SCP2 sterol-binding domain PAJ_RS18520 b18878e5493c0612645f8816b7df0892 201 PANTHER PTHR38693:SF1 1 201 1.1E-60 T 14-09-2016 PAJ_RS18520 b18878e5493c0612645f8816b7df0892 201 PANTHER PTHR38693 1 201 1.1E-60 T 14-09-2016 PAJ_RS17870 f50d2f9b58fd371efe70a87bcc93ede2 186 PANTHER PTHR30037:SF4 1 184 2.8E-110 T 14-09-2016 PAJ_RS17870 f50d2f9b58fd371efe70a87bcc93ede2 186 Pfam PF03352 Methyladenine glycosylase 6 182 1.1E-79 T 14-09-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 PAJ_RS17870 f50d2f9b58fd371efe70a87bcc93ede2 186 PANTHER PTHR30037 1 184 2.8E-110 T 14-09-2016 PAJ_RS17870 f50d2f9b58fd371efe70a87bcc93ede2 186 SUPERFAMILY SSF48150 1 184 3.92E-80 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PAJ_RS17870 f50d2f9b58fd371efe70a87bcc93ede2 186 Gene3D G3DSA:1.10.340.30 1 182 6.5E-85 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PAJ_RS17870 f50d2f9b58fd371efe70a87bcc93ede2 186 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 2 181 3.0E-79 T 14-09-2016 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 PAJ_RS02660 01e3e7ff8789daee76cda7fb1d47c307 247 Gene3D G3DSA:3.40.1390.30 1 107 2.1E-37 T 14-09-2016 PAJ_RS02660 01e3e7ff8789daee76cda7fb1d47c307 247 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 233 3.8E-57 T 14-09-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PAJ_RS02660 01e3e7ff8789daee76cda7fb1d47c307 247 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 246 6.4E-75 T 14-09-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PAJ_RS02660 01e3e7ff8789daee76cda7fb1d47c307 247 SUPERFAMILY SSF102705 1 246 4.32E-84 T 14-09-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PAJ_RS02660 01e3e7ff8789daee76cda7fb1d47c307 247 Gene3D G3DSA:3.40.1390.30 108 214 4.2E-31 T 14-09-2016 PAJ_RS02660 01e3e7ff8789daee76cda7fb1d47c307 247 PANTHER PTHR13799 1 243 4.4E-90 T 14-09-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PAJ_RS14530 aad3ea4b592ebc6296cd8348cd1f0af7 193 PANTHER PTHR35602:SF3 1 193 1.4E-120 T 14-09-2016 PAJ_RS14530 aad3ea4b592ebc6296cd8348cd1f0af7 193 Pfam PF05728 Uncharacterised protein family (UPF0227) 4 188 2.8E-71 T 14-09-2016 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA PAJ_RS14530 aad3ea4b592ebc6296cd8348cd1f0af7 193 Gene3D G3DSA:3.40.50.1820 3 185 1.4E-16 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS14530 aad3ea4b592ebc6296cd8348cd1f0af7 193 SUPERFAMILY SSF53474 4 188 2.55E-17 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS14530 aad3ea4b592ebc6296cd8348cd1f0af7 193 PANTHER PTHR35602 1 193 1.4E-120 T 14-09-2016 PAJ_RS00875 d49beaef344bab4cf1ede9dffc6fcff5 263 SUPERFAMILY SSF56219 44 260 3.01E-24 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS00875 d49beaef344bab4cf1ede9dffc6fcff5 263 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 49 252 1.5E-7 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS00875 d49beaef344bab4cf1ede9dffc6fcff5 263 Hamap MF_01119 UPF0294 protein YafD [yafD]. 1 260 50.774 T 14-09-2016 IPR022958 Uncharacterised protein family UPF0294 PAJ_RS00875 d49beaef344bab4cf1ede9dffc6fcff5 263 Gene3D G3DSA:3.60.10.10 44 260 3.0E-7 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS11230 658cad1f7bdca9a1de5bef9dac8f4d12 253 Pfam PF01909 Nucleotidyltransferase domain 41 81 1.4E-5 T 14-09-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 PAJ_RS11230 658cad1f7bdca9a1de5bef9dac8f4d12 253 Gene3D G3DSA:3.30.460.10 38 131 4.4E-20 T 14-09-2016 PAJ_RS11230 658cad1f7bdca9a1de5bef9dac8f4d12 253 SUPERFAMILY SSF81301 40 116 5.23E-11 T 14-09-2016 PAJ_RS08685 fa334033cabe8c3cad94f58092d9ba8f 222 Gene3D G3DSA:1.10.3720.10 11 216 7.3E-56 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS08685 fa334033cabe8c3cad94f58092d9ba8f 222 PANTHER PTHR30614 5 220 4.1E-121 T 14-09-2016 PAJ_RS08685 fa334033cabe8c3cad94f58092d9ba8f 222 PANTHER PTHR30614:SF18 5 220 4.1E-121 T 14-09-2016 PAJ_RS08685 fa334033cabe8c3cad94f58092d9ba8f 222 SUPERFAMILY SSF161098 13 206 2.62E-50 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS08685 fa334033cabe8c3cad94f58092d9ba8f 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 9.8E-25 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS08685 fa334033cabe8c3cad94f58092d9ba8f 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 5.1E-35 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS15370 09826817de59eae318380702fdf4f210 66 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 59 1.0E-17 T 14-09-2016 IPR019201 Protein of unknown function DUF2065 PAJ_RS15370 09826817de59eae318380702fdf4f210 66 PANTHER PTHR38602 1 64 1.3E-17 T 14-09-2016 PAJ_RS15370 09826817de59eae318380702fdf4f210 66 PANTHER PTHR38602:SF1 1 64 1.3E-17 T 14-09-2016 PAJ_RS11370 c6772c2441178ecfdd92c8fa5a0b95e0 337 Gene3D G3DSA:3.40.190.10 120 283 6.0E-68 T 14-09-2016 PAJ_RS11370 c6772c2441178ecfdd92c8fa5a0b95e0 337 PANTHER PTHR30368 13 337 2.5E-234 T 14-09-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 PAJ_RS11370 c6772c2441178ecfdd92c8fa5a0b95e0 337 Pfam PF13531 Bacterial extracellular solute-binding protein 46 286 9.2E-41 T 14-09-2016 PAJ_RS11370 c6772c2441178ecfdd92c8fa5a0b95e0 337 SUPERFAMILY SSF53850 25 332 2.99E-76 T 14-09-2016 PAJ_RS11370 c6772c2441178ecfdd92c8fa5a0b95e0 337 PANTHER PTHR30368:SF1 13 337 2.5E-234 T 14-09-2016 PAJ_RS11370 c6772c2441178ecfdd92c8fa5a0b95e0 337 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 23 332 7.7E-162 T 14-09-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 PAJ_RS00040 380b913381d2818358f4a48bc2cccc9a 186 Pfam PF01184 GPR1/FUN34/yaaH family 3 181 1.9E-37 T 14-09-2016 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 PAJ_RS00040 380b913381d2818358f4a48bc2cccc9a 186 PANTHER PTHR30178 1 185 7.8E-94 T 14-09-2016 PAJ_RS00040 380b913381d2818358f4a48bc2cccc9a 186 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 8 17 - T 14-09-2016 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 PAJ_RS00040 380b913381d2818358f4a48bc2cccc9a 186 PANTHER PTHR30178:SF6 1 185 7.8E-94 T 14-09-2016 PAJ_RS07210 901275188844155ed719da85d3c3cac5 98 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 22 76 8.0E-21 T 14-09-2016 IPR010595 Protein of unknown function DUF1161 PAJ_RS07210 901275188844155ed719da85d3c3cac5 98 Pfam PF06649 Protein of unknown function (DUF1161) 23 76 4.4E-25 T 14-09-2016 IPR010595 Protein of unknown function DUF1161 PAJ_RS03450 d3667149f93dcb0e9728e872db3e958d 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 316 5.0E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03450 d3667149f93dcb0e9728e872db3e958d 320 SUPERFAMILY SSF161098 31 311 1.4E-58 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03450 d3667149f93dcb0e9728e872db3e958d 320 Gene3D G3DSA:1.10.3720.10 29 309 6.5E-53 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03450 d3667149f93dcb0e9728e872db3e958d 320 PANTHER PTHR30193:SF5 6 319 4.1E-153 T 14-09-2016 PAJ_RS03450 d3667149f93dcb0e9728e872db3e958d 320 PANTHER PTHR30193 6 319 4.1E-153 T 14-09-2016 PAJ_RS19370 626fcf7174fbf6ca49ab36f5d186a1fd 403 Pfam PF07690 Major Facilitator Superfamily 19 209 2.2E-14 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS19370 626fcf7174fbf6ca49ab36f5d186a1fd 403 Gene3D G3DSA:1.20.1250.20 17 204 2.9E-15 T 14-09-2016 PAJ_RS19370 626fcf7174fbf6ca49ab36f5d186a1fd 403 PANTHER PTHR23546:SF1 1 403 6.5E-56 T 14-09-2016 PAJ_RS19370 626fcf7174fbf6ca49ab36f5d186a1fd 403 Gene3D G3DSA:1.20.1250.20 220 397 2.6E-5 T 14-09-2016 PAJ_RS19370 626fcf7174fbf6ca49ab36f5d186a1fd 403 PANTHER PTHR23546 1 403 6.5E-56 T 14-09-2016 PAJ_RS19370 626fcf7174fbf6ca49ab36f5d186a1fd 403 SUPERFAMILY SSF103473 17 396 1.31E-23 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS10905 2a6bf321a9f44f5646fe97d2b2c4bd2f 182 SUPERFAMILY SSF160443 95 152 1.44E-9 T 14-09-2016 IPR002625 Smr domain PAJ_RS10905 2a6bf321a9f44f5646fe97d2b2c4bd2f 182 Pfam PF01713 Smr domain 97 171 1.4E-17 T 14-09-2016 IPR002625 Smr domain PAJ_RS10905 2a6bf321a9f44f5646fe97d2b2c4bd2f 182 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 173 40.889 T 14-09-2016 IPR022990 Uncharacterised protein family UPF0115 PAJ_RS10905 2a6bf321a9f44f5646fe97d2b2c4bd2f 182 PANTHER PTHR35562:SF1 1 182 2.4E-110 T 14-09-2016 PAJ_RS10905 2a6bf321a9f44f5646fe97d2b2c4bd2f 182 PANTHER PTHR35562 1 182 2.4E-110 T 14-09-2016 PAJ_RS10905 2a6bf321a9f44f5646fe97d2b2c4bd2f 182 SMART SM00463 94 172 4.7E-21 T 14-09-2016 IPR002625 Smr domain PAJ_RS15545 d38f1cb93be090f5168330576bea4352 340 Pfam PF04085 rod shape-determining protein MreC 123 269 8.7E-38 T 14-09-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 PAJ_RS15545 d38f1cb93be090f5168330576bea4352 340 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 275 3.3E-116 T 14-09-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 PAJ_RS15545 d38f1cb93be090f5168330576bea4352 340 PANTHER PTHR34138 1 318 2.3E-98 T 14-09-2016 PAJ_RS15545 d38f1cb93be090f5168330576bea4352 340 PIRSF PIRSF038471 2 284 3.9E-76 T 14-09-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 PAJ_RS15545 d38f1cb93be090f5168330576bea4352 340 PANTHER PTHR34138:SF1 1 318 2.3E-98 T 14-09-2016 PAJ_RS09350 35d81342d286c4331ee0475d8a0100ec 230 Pfam PF07385 Protein of unknown function (DUF1498) 1 221 1.1E-93 T 14-09-2016 IPR010864 Protein of unknown function DUF1498 KEGG: 00040+5.3.1.15 PAJ_RS09350 35d81342d286c4331ee0475d8a0100ec 230 SUPERFAMILY SSF51182 85 190 2.87E-6 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS18545 50bf0e41b1d5b7f1f0a7a0c038051a39 260 PANTHER PTHR10060 1 260 1.1E-138 T 14-09-2016 IPR001130 TatD family GO:0016788 PAJ_RS18545 50bf0e41b1d5b7f1f0a7a0c038051a39 260 Pfam PF01026 TatD related DNase 2 257 5.1E-68 T 14-09-2016 IPR001130 TatD family GO:0016788 PAJ_RS18545 50bf0e41b1d5b7f1f0a7a0c038051a39 260 Gene3D G3DSA:3.20.20.140 1 259 3.8E-86 T 14-09-2016 PAJ_RS18545 50bf0e41b1d5b7f1f0a7a0c038051a39 260 Hamap MF_00901 Tat-linked quality control protein TatD [tatD]. 1 260 62.921 T 14-09-2016 IPR024918 3'-5' ssDNA/RNA exonuclease TatD GO:0008408 PAJ_RS18545 50bf0e41b1d5b7f1f0a7a0c038051a39 260 SUPERFAMILY SSF51556 1 259 2.87E-84 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS18545 50bf0e41b1d5b7f1f0a7a0c038051a39 260 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 124 134 - T 14-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PAJ_RS18545 50bf0e41b1d5b7f1f0a7a0c038051a39 260 PIRSF PIRSF005902 1 260 4.3E-76 T 14-09-2016 IPR001130 TatD family GO:0016788 PAJ_RS18545 50bf0e41b1d5b7f1f0a7a0c038051a39 260 PANTHER PTHR10060:SF13 1 260 1.1E-138 T 14-09-2016 PAJ_RS09705 5cf3f0ddf9f35a80a0ab54031b3bdb04 108 Pfam PF04363 Protein of unknown function (DUF496) 8 99 2.2E-45 T 14-09-2016 IPR007458 Protein of unknown function DUF496 PAJ_RS09705 5cf3f0ddf9f35a80a0ab54031b3bdb04 108 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 8 102 24.687 T 14-09-2016 IPR007458 Protein of unknown function DUF496 PAJ_RS09705 5cf3f0ddf9f35a80a0ab54031b3bdb04 108 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 11 98 2.0E-39 T 14-09-2016 IPR007458 Protein of unknown function DUF496 PAJ_RS09705 5cf3f0ddf9f35a80a0ab54031b3bdb04 108 PANTHER PTHR39591 1 101 3.3E-55 T 14-09-2016 PAJ_RS09705 5cf3f0ddf9f35a80a0ab54031b3bdb04 108 PIRSF PIRSF028773 1 107 6.6E-51 T 14-09-2016 IPR007458 Protein of unknown function DUF496 PAJ_RS17240 ff0c6de8af2871f9f6a98792c2f8bb65 335 SUPERFAMILY SSF88713 30 232 7.79E-9 T 14-09-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 115 135 2.7E-99 T 14-09-2016 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 54 78 2.7E-99 T 14-09-2016 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 234 253 2.7E-99 T 14-09-2016 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 89 110 2.7E-99 T 14-09-2016 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 264 287 2.7E-99 T 14-09-2016 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 27 49 2.7E-99 T 14-09-2016 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 150 175 2.7E-99 T 14-09-2016 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 182 205 2.7E-99 T 14-09-2016 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 SUPERFAMILY SSF111364 31 288 1.31E-81 T 14-09-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 31 288 3.8E-81 T 14-09-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 PAJ_RS19170 2e85f000d0380112c82641450a44ed4a 288 Gene3D G3DSA:2.40.230.20 26 288 1.2E-97 T 14-09-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 PAJ_RS12720 856e282ed1056398dea5eaebee55c58c 534 SUPERFAMILY SSF55931 18 530 2.94E-205 T 14-09-2016 PAJ_RS12720 856e282ed1056398dea5eaebee55c58c 534 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 534 221.227 T 14-09-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 PAJ_RS12720 856e282ed1056398dea5eaebee55c58c 534 Pfam PF04262 Glutamate-cysteine ligase 24 395 1.8E-171 T 14-09-2016 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 PAJ_RS12720 856e282ed1056398dea5eaebee55c58c 534 PANTHER PTHR38761 16 530 1.1E-273 T 14-09-2016 PAJ_RS12720 856e282ed1056398dea5eaebee55c58c 534 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 20 530 2.4E-249 T 14-09-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 PAJ_RS16970 68e8b720095f9c9ead5a2e30164bbdaf 215 PANTHER PTHR30055 1 207 6.1E-109 T 14-09-2016 PAJ_RS16970 68e8b720095f9c9ead5a2e30164bbdaf 215 SUPERFAMILY SSF46689 3 77 1.57E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS16970 68e8b720095f9c9ead5a2e30164bbdaf 215 Gene3D G3DSA:1.10.357.10 2 193 2.9E-35 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS16970 68e8b720095f9c9ead5a2e30164bbdaf 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 58 2.2E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS16970 68e8b720095f9c9ead5a2e30164bbdaf 215 PANTHER PTHR30055:SF39 1 207 6.1E-109 T 14-09-2016 PAJ_RS07430 9aa65dee334923b9dbcb3e55054353ad 311 Pfam PF01171 PP-loop family 42 204 5.4E-11 T 14-09-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal PAJ_RS07430 9aa65dee334923b9dbcb3e55054353ad 311 PIRSF PIRSF004976 1 268 1.8E-74 T 14-09-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 PAJ_RS07430 9aa65dee334923b9dbcb3e55054353ad 311 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 10 271 57.806 T 14-09-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 PAJ_RS07430 9aa65dee334923b9dbcb3e55054353ad 311 PANTHER PTHR11807:SF16 9 288 4.7E-121 T 14-09-2016 PAJ_RS07430 9aa65dee334923b9dbcb3e55054353ad 311 Gene3D G3DSA:3.40.50.620 23 207 1.5E-18 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS07430 9aa65dee334923b9dbcb3e55054353ad 311 PANTHER PTHR11807 9 288 4.7E-121 T 14-09-2016 PAJ_RS07430 9aa65dee334923b9dbcb3e55054353ad 311 SUPERFAMILY SSF52402 17 235 7.38E-53 T 14-09-2016 PAJ_RS07095 b5527939bca2adddf852244480870269 546 PANTHER PTHR32089:SF63 151 513 7.6E-113 T 14-09-2016 PAJ_RS07095 b5527939bca2adddf852244480870269 546 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 181 1.4E-6 T 14-09-2016 IPR024478 4HB MCP domain PAJ_RS07095 b5527939bca2adddf852244480870269 546 Gene3D G3DSA:1.10.287.950 277 482 1.9E-58 T 14-09-2016 PAJ_RS07095 b5527939bca2adddf852244480870269 546 Pfam PF00672 HAMP domain 190 257 1.0E-6 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PAJ_RS07095 b5527939bca2adddf852244480870269 546 SUPERFAMILY SSF58104 230 510 1.96E-71 T 14-09-2016 PAJ_RS07095 b5527939bca2adddf852244480870269 546 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 509 5.6E-59 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS07095 b5527939bca2adddf852244480870269 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 361 388 1.5E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07095 b5527939bca2adddf852244480870269 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 390 419 1.5E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07095 b5527939bca2adddf852244480870269 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 438 467 1.5E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07095 b5527939bca2adddf852244480870269 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 19 1.5E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07095 b5527939bca2adddf852244480870269 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 284 313 1.5E-52 T 14-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PAJ_RS07095 b5527939bca2adddf852244480870269 546 PANTHER PTHR32089 151 513 7.6E-113 T 14-09-2016 PAJ_RS07095 b5527939bca2adddf852244480870269 546 SMART SM00283 263 510 3.3E-87 T 14-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PAJ_RS19645 953a25968f83c8a68bc98efd3042484b 43 Pfam PF08085 Entericidin EcnA/B family 22 42 4.8E-9 T 14-09-2016 IPR012556 Entericidin A/B GO:0009636|GO:0016020 PAJ_RS18140 c0e8fa438e9c198836295e1feeaaa128 536 PIRSF PIRSF002741 22 536 2.6E-123 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PAJ_RS18140 c0e8fa438e9c198836295e1feeaaa128 536 PANTHER PTHR30290 1 536 8.7E-235 T 14-09-2016 PAJ_RS18140 c0e8fa438e9c198836295e1feeaaa128 536 Gene3D G3DSA:3.10.105.10 303 505 1.1E-70 T 14-09-2016 PAJ_RS18140 c0e8fa438e9c198836295e1feeaaa128 536 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 453 7.6E-111 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain PAJ_RS18140 c0e8fa438e9c198836295e1feeaaa128 536 PANTHER PTHR30290:SF14 1 536 8.7E-235 T 14-09-2016 PAJ_RS18140 c0e8fa438e9c198836295e1feeaaa128 536 Gene3D G3DSA:3.40.190.10 152 302 9.7E-51 T 14-09-2016 PAJ_RS18140 c0e8fa438e9c198836295e1feeaaa128 536 SUPERFAMILY SSF53850 29 533 7.42E-165 T 14-09-2016 PAJ_RS19275 11e243fb8cae52ef19e2d55b51a77c61 287 SUPERFAMILY SSF47616 133 279 4.87E-32 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS19275 11e243fb8cae52ef19e2d55b51a77c61 287 Pfam PF02798 Glutathione S-transferase, N-terminal domain 53 127 8.1E-6 T 14-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PAJ_RS19275 11e243fb8cae52ef19e2d55b51a77c61 287 SUPERFAMILY SSF52833 37 130 4.2E-17 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19275 11e243fb8cae52ef19e2d55b51a77c61 287 PANTHER PTHR11260 20 262 9.1E-135 T 14-09-2016 PAJ_RS19275 11e243fb8cae52ef19e2d55b51a77c61 287 Pfam PF13410 Glutathione S-transferase, C-terminal domain 182 244 2.2E-10 T 14-09-2016 PAJ_RS19275 11e243fb8cae52ef19e2d55b51a77c61 287 Gene3D G3DSA:1.20.1050.10 131 253 2.4E-42 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS19275 11e243fb8cae52ef19e2d55b51a77c61 287 Gene3D G3DSA:3.40.30.10 33 130 3.0E-26 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19275 11e243fb8cae52ef19e2d55b51a77c61 287 PANTHER PTHR11260:SF258 20 262 9.1E-135 T 14-09-2016 PAJ_RS20800 18cc946a6dce30e140713252437d3d5b 298 Gene3D G3DSA:1.10.10.10 5 90 4.2E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20800 18cc946a6dce30e140713252437d3d5b 298 SUPERFAMILY SSF46785 5 110 9.08E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20800 18cc946a6dce30e140713252437d3d5b 298 SUPERFAMILY SSF53850 91 290 3.26E-41 T 14-09-2016 PAJ_RS20800 18cc946a6dce30e140713252437d3d5b 298 Pfam PF03466 LysR substrate binding domain 90 289 7.0E-40 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS20800 18cc946a6dce30e140713252437d3d5b 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 3.4E-20 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS20800 18cc946a6dce30e140713252437d3d5b 298 Gene3D G3DSA:3.40.190.10 181 258 1.9E-7 T 14-09-2016 PAJ_RS20800 18cc946a6dce30e140713252437d3d5b 298 PANTHER PTHR30537:SF5 1 286 1.8E-95 T 14-09-2016 PAJ_RS20800 18cc946a6dce30e140713252437d3d5b 298 Gene3D G3DSA:3.40.190.10 94 180 1.6E-19 T 14-09-2016 PAJ_RS20800 18cc946a6dce30e140713252437d3d5b 298 PANTHER PTHR30537 1 286 1.8E-95 T 14-09-2016 PAJ_RS03765 789470b524188f86eebca14f178e21cf 326 Pfam PF00535 Glycosyl transferase family 2 7 135 1.2E-28 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS03765 789470b524188f86eebca14f178e21cf 326 PANTHER PTHR22916 1 221 3.1E-37 T 14-09-2016 PAJ_RS03765 789470b524188f86eebca14f178e21cf 326 SUPERFAMILY SSF53448 5 225 1.13E-44 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS03765 789470b524188f86eebca14f178e21cf 326 Gene3D G3DSA:3.90.550.10 3 201 1.1E-44 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS01430 826f4822027d65b35e4fefdec1e6c1a6 84 Pfam PF10796 Sigma-S stabilisation anti-adaptor protein 1 80 3.5E-21 T 14-09-2016 IPR019732 Sigma-S stabilisation anti-adaptor protein GO:0005737 PAJ_RS01450 c9bf18257598c0d167ec8901852d09a6 149 PANTHER PTHR35146:SF1 1 149 1.8E-58 T 14-09-2016 PAJ_RS01450 c9bf18257598c0d167ec8901852d09a6 149 PANTHER PTHR35146 1 149 1.8E-58 T 14-09-2016 PAJ_RS01450 c9bf18257598c0d167ec8901852d09a6 149 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 31.926 T 14-09-2016 IPR003791 Protein of unknown function UPF0178 PAJ_RS01450 c9bf18257598c0d167ec8901852d09a6 149 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 145 4.5E-51 T 14-09-2016 IPR003791 Protein of unknown function UPF0178 PAJ_RS18525 4078c149dabce42776ed42180ab75222 545 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 541 56.747 T 14-09-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 PAJ_RS18525 4078c149dabce42776ed42180ab75222 545 Pfam PF03109 ABC1 family 113 231 4.7E-34 T 14-09-2016 IPR004147 UbiB domain PAJ_RS18525 4078c149dabce42776ed42180ab75222 545 PANTHER PTHR10566:SF79 4 458 4.8E-302 T 14-09-2016 PAJ_RS18525 4078c149dabce42776ed42180ab75222 545 Gene3D G3DSA:3.30.200.20 129 156 4.4E-4 T 14-09-2016 PAJ_RS18525 4078c149dabce42776ed42180ab75222 545 Gene3D G3DSA:3.30.200.20 192 243 4.4E-4 T 14-09-2016 PAJ_RS18525 4078c149dabce42776ed42180ab75222 545 SUPERFAMILY SSF56112 193 437 2.18E-50 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS18525 4078c149dabce42776ed42180ab75222 545 SUPERFAMILY SSF56112 94 158 2.18E-50 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS18525 4078c149dabce42776ed42180ab75222 545 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 2.9E-183 T 14-09-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 PAJ_RS18525 4078c149dabce42776ed42180ab75222 545 PANTHER PTHR10566 4 458 4.8E-302 T 14-09-2016 PAJ_RS01465 9b784860b0e4523df67190b35dcab843 63 Pfam PF16362 YaiA protein 1 63 1.5E-35 T 14-09-2016 IPR032303 YaiA protein PAJ_RS17225 62ea6f180b02a2aefe4f30b793889809 389 Pfam PF00534 Glycosyl transferases group 1 181 302 1.3E-19 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 PAJ_RS17225 62ea6f180b02a2aefe4f30b793889809 389 PANTHER PTHR12526 340 388 2.5E-28 T 14-09-2016 PAJ_RS17225 62ea6f180b02a2aefe4f30b793889809 389 PANTHER PTHR12526 12 304 2.5E-28 T 14-09-2016 PAJ_RS17225 62ea6f180b02a2aefe4f30b793889809 389 Pfam PF13439 Glycosyltransferase Family 4 12 157 1.9E-8 T 14-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PAJ_RS17225 62ea6f180b02a2aefe4f30b793889809 389 SUPERFAMILY SSF53756 5 302 1.04E-42 T 14-09-2016 PAJ_RS17225 62ea6f180b02a2aefe4f30b793889809 389 SUPERFAMILY SSF53756 337 385 1.04E-42 T 14-09-2016 PAJ_RS17225 62ea6f180b02a2aefe4f30b793889809 389 Gene3D G3DSA:3.40.50.2000 178 297 2.2E-13 T 14-09-2016 PAJ_RS05890 37527ff7ce1fd0cdeabe33d1dd003af9 326 Pfam PF03734 L,D-transpeptidase catalytic domain 99 234 1.4E-19 T 14-09-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 PAJ_RS05890 37527ff7ce1fd0cdeabe33d1dd003af9 326 PANTHER PTHR30582:SF9 33 311 1.4E-120 T 14-09-2016 PAJ_RS05890 37527ff7ce1fd0cdeabe33d1dd003af9 326 Gene3D G3DSA:2.40.440.10 91 236 1.8E-35 T 14-09-2016 PAJ_RS05890 37527ff7ce1fd0cdeabe33d1dd003af9 326 PANTHER PTHR30582 33 311 1.4E-120 T 14-09-2016 PAJ_RS05890 37527ff7ce1fd0cdeabe33d1dd003af9 326 SUPERFAMILY SSF141523 175 235 5.23E-30 T 14-09-2016 PAJ_RS05890 37527ff7ce1fd0cdeabe33d1dd003af9 326 SUPERFAMILY SSF141523 92 147 5.23E-30 T 14-09-2016 PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 Gene3D G3DSA:3.30.870.10 112 311 1.4E-32 T 14-09-2016 PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 Pfam PF13091 PLD-like domain 134 246 2.8E-11 T 14-09-2016 IPR025202 Phospholipase D-like domain PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 Pfam PF13091 PLD-like domain 329 442 5.8E-20 T 14-09-2016 IPR025202 Phospholipase D-like domain PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 SMART SM00155 219 246 3.5E-4 T 14-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 SMART SM00155 399 426 2.7E-5 T 14-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 SUPERFAMILY SSF56024 66 315 6.8E-45 T 14-09-2016 PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 6 486 9.8E-202 T 14-09-2016 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 PANTHER PTHR21248:SF9 18 486 7.5E-280 T 14-09-2016 PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 486 50.925 T 14-09-2016 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 SUPERFAMILY SSF56024 274 473 8.3E-45 T 14-09-2016 PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 Pfam PF13396 Phospholipase_D-nuclease N-terminal 24 59 2.1E-7 T 14-09-2016 IPR027379 Cardiolipin synthase N-terminal PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 Gene3D G3DSA:3.30.870.10 312 462 5.0E-33 T 14-09-2016 PAJ_RS07770 34f88ce641fd9bb8cf4ddcf53cf04c1b 486 PANTHER PTHR21248 18 486 7.5E-280 T 14-09-2016 PAJ_RS16580 caa41f973ea9ab430b8ad68ec5e4cebe 680 Gene3D G3DSA:1.20.1050.40 9 138 1.7E-26 T 14-09-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal PAJ_RS16580 caa41f973ea9ab430b8ad68ec5e4cebe 680 PANTHER PTHR11804 3 678 0.0 T 14-09-2016 PAJ_RS16580 caa41f973ea9ab430b8ad68ec5e4cebe 680 SUPERFAMILY SSF55486 1 677 1.47E-215 T 14-09-2016 PAJ_RS16580 caa41f973ea9ab430b8ad68ec5e4cebe 680 PANTHER PTHR11804:SF8 3 678 0.0 T 14-09-2016 PAJ_RS16580 caa41f973ea9ab430b8ad68ec5e4cebe 680 Gene3D G3DSA:3.40.390.10 361 504 5.1E-60 T 14-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 PAJ_RS16580 caa41f973ea9ab430b8ad68ec5e4cebe 680 Pfam PF01432 Peptidase family M3 222 677 1.4E-171 T 14-09-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 PAJ_RS16580 caa41f973ea9ab430b8ad68ec5e4cebe 680 Gene3D G3DSA:1.10.1370.10 140 349 1.1E-143 T 14-09-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PAJ_RS16580 caa41f973ea9ab430b8ad68ec5e4cebe 680 Gene3D G3DSA:1.10.1370.10 505 679 1.1E-143 T 14-09-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PAJ_RS07300 32bf1b95e0e52c9bb9c99fd04e240231 506 Gene3D G3DSA:3.40.50.1820 6 496 2.3E-116 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS07300 32bf1b95e0e52c9bb9c99fd04e240231 506 Pfam PF00135 Carboxylesterase family 10 478 3.8E-87 T 14-09-2016 IPR002018 Carboxylesterase, type B PAJ_RS07300 32bf1b95e0e52c9bb9c99fd04e240231 506 ProSitePatterns PS00941 Carboxylesterases type-B signature 2. 84 94 - T 14-09-2016 IPR019819 Carboxylesterase type B, conserved site PAJ_RS07300 32bf1b95e0e52c9bb9c99fd04e240231 506 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 185 200 - T 14-09-2016 IPR019826 Carboxylesterase type B, active site PAJ_RS07300 32bf1b95e0e52c9bb9c99fd04e240231 506 SUPERFAMILY SSF53474 7 494 2.95E-103 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS07300 32bf1b95e0e52c9bb9c99fd04e240231 506 PANTHER PTHR11559 9 505 3.8E-127 T 14-09-2016 PAJ_RS07300 32bf1b95e0e52c9bb9c99fd04e240231 506 PANTHER PTHR11559:SF142 9 505 3.8E-127 T 14-09-2016 PAJ_RS11620 9e1d9236ab6eb5d6ff942632304b0f38 340 Gene3D G3DSA:3.40.190.10 270 327 2.0E-31 T 14-09-2016 PAJ_RS11620 9e1d9236ab6eb5d6ff942632304b0f38 340 Gene3D G3DSA:3.40.190.10 9 126 2.0E-31 T 14-09-2016 PAJ_RS11620 9e1d9236ab6eb5d6ff942632304b0f38 340 SUPERFAMILY SSF53850 28 331 5.67E-64 T 14-09-2016 PAJ_RS11620 9e1d9236ab6eb5d6ff942632304b0f38 340 Pfam PF13343 Bacterial extracellular solute-binding protein 79 315 7.1E-53 T 14-09-2016 PAJ_RS11620 9e1d9236ab6eb5d6ff942632304b0f38 340 PANTHER PTHR30006 7 339 1.4E-45 T 14-09-2016 PAJ_RS11620 9e1d9236ab6eb5d6ff942632304b0f38 340 Gene3D G3DSA:3.40.190.10 130 269 9.1E-41 T 14-09-2016 PAJ_RS18575 43bdcb6d21f18400145b33636615119d 443 SUPERFAMILY SSF55920 163 438 6.02E-53 T 14-09-2016 IPR000994 Peptidase M24, structural domain PAJ_RS18575 43bdcb6d21f18400145b33636615119d 443 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 335 347 - T 14-09-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site PAJ_RS18575 43bdcb6d21f18400145b33636615119d 443 Pfam PF00557 Metallopeptidase family M24 169 429 1.2E-43 T 14-09-2016 IPR000994 Peptidase M24, structural domain PAJ_RS18575 43bdcb6d21f18400145b33636615119d 443 PANTHER PTHR10804:SF101 6 440 1.3E-236 T 14-09-2016 PAJ_RS18575 43bdcb6d21f18400145b33636615119d 443 PANTHER PTHR10804 6 440 1.3E-236 T 14-09-2016 PAJ_RS18575 43bdcb6d21f18400145b33636615119d 443 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 443 57.725 T 14-09-2016 IPR022846 Xaa-Pro dipeptidase GO:0016795 PAJ_RS18575 43bdcb6d21f18400145b33636615119d 443 Gene3D G3DSA:3.90.230.10 161 437 5.5E-51 T 14-09-2016 IPR000994 Peptidase M24, structural domain PAJ_RS05805 80d6e7063867816915c9e73a7bd48720 249 Pfam PF00005 ABC transporter 14 161 2.8E-20 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS05805 80d6e7063867816915c9e73a7bd48720 249 PANTHER PTHR24220:SF462 1 238 9.9E-64 T 14-09-2016 PAJ_RS05805 80d6e7063867816915c9e73a7bd48720 249 ProSitePatterns PS00211 ABC transporters family signature. 127 141 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PAJ_RS05805 80d6e7063867816915c9e73a7bd48720 249 PANTHER PTHR24220 1 238 9.9E-64 T 14-09-2016 PAJ_RS05805 80d6e7063867816915c9e73a7bd48720 249 SUPERFAMILY SSF52540 14 226 3.88E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS05805 80d6e7063867816915c9e73a7bd48720 249 SMART SM00382 23 244 2.2E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS05805 80d6e7063867816915c9e73a7bd48720 249 Gene3D G3DSA:3.40.50.300 14 224 6.5E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS02055 3b34a82d70ee514a04c64e53dd9ff542 78 Pfam PF14110 Domain of unknown function (DUF4282) 2 72 3.3E-7 T 14-09-2016 IPR025557 Protein of unknown function DUF4282 PAJ_RS20420 aa90d28edc3c6ccbfddc06801383b887 83 Gene3D G3DSA:1.10.1200.10 3 81 2.5E-19 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS20420 aa90d28edc3c6ccbfddc06801383b887 83 Pfam PF00550 Phosphopantetheine attachment site 10 76 4.8E-14 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS20420 aa90d28edc3c6ccbfddc06801383b887 83 SUPERFAMILY SSF47336 4 81 4.06E-19 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS20420 aa90d28edc3c6ccbfddc06801383b887 83 Hamap MF_01217 Acyl carrier protein [acpP]. 6 80 13.935 T 14-09-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 PAJ_RS14560 c5ffac4ad63dedfaff3f35a49dfb5637 386 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 3.9E-162 T 14-09-2016 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain PAJ_RS14560 c5ffac4ad63dedfaff3f35a49dfb5637 386 SUPERFAMILY SSF52440 174 279 9.21E-42 T 14-09-2016 IPR016185 Pre-ATP-grasp domain PAJ_RS14560 c5ffac4ad63dedfaff3f35a49dfb5637 386 SUPERFAMILY SSF56059 1 168 4.31E-92 T 14-09-2016 PAJ_RS14560 c5ffac4ad63dedfaff3f35a49dfb5637 386 SUPERFAMILY SSF56059 266 382 4.31E-92 T 14-09-2016 PAJ_RS14560 c5ffac4ad63dedfaff3f35a49dfb5637 386 PANTHER PTHR30094 6 386 1.1E-159 T 14-09-2016 PAJ_RS14560 c5ffac4ad63dedfaff3f35a49dfb5637 386 PANTHER PTHR30094:SF0 6 386 1.1E-159 T 14-09-2016 PAJ_RS15715 ea83d8cbf2dfbf8d0e2d552c44a7e38f 86 Pfam PF03889 Domain of unknown function 9 45 6.0E-22 T 14-09-2016 IPR005589 Protein of unknown function DUF331 PAJ_RS00465 4a98dd3bf827a9fac90990800b082d3f 332 Pfam PF00248 Aldo/keto reductase family 16 310 5.8E-76 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS00465 4a98dd3bf827a9fac90990800b082d3f 332 SUPERFAMILY SSF51430 1 313 3.8E-100 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS00465 4a98dd3bf827a9fac90990800b082d3f 332 Gene3D G3DSA:3.20.20.100 1 323 1.8E-115 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain PAJ_RS00465 4a98dd3bf827a9fac90990800b082d3f 332 PANTHER PTHR11732 1 332 9.3E-140 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PAJ_RS00465 4a98dd3bf827a9fac90990800b082d3f 332 PANTHER PTHR11732:SF215 1 332 9.3E-140 T 14-09-2016 PAJ_RS20635 ed3bed263a14423a68714cbb44921041 168 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 89 157 1.0E-16 T 14-09-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB PAJ_RS20635 ed3bed263a14423a68714cbb44921041 168 Pfam PF11776 Nickel/cobalt transporter regulator 108 157 1.5E-18 T 14-09-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB PAJ_RS05795 7e498a2b07d9666928a03c53316be6f4 329 Pfam PF01032 FecCD transport family 25 324 3.4E-83 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS05795 7e498a2b07d9666928a03c53316be6f4 329 SUPERFAMILY SSF81345 10 324 5.89E-79 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS05795 7e498a2b07d9666928a03c53316be6f4 329 PANTHER PTHR30472 3 329 7.0E-170 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PAJ_RS05795 7e498a2b07d9666928a03c53316be6f4 329 Gene3D G3DSA:1.10.3470.10 11 326 1.9E-96 T 14-09-2016 IPR029022 ABC transporter, BtuC-like PAJ_RS05795 7e498a2b07d9666928a03c53316be6f4 329 PANTHER PTHR30472:SF29 3 329 7.0E-170 T 14-09-2016 PAJ_RS14345 36d6fd47609093c587a83cd8f14dac06 813 Pfam PF00577 Outer membrane usher protein 229 687 3.3E-34 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS14345 36d6fd47609093c587a83cd8f14dac06 813 PANTHER PTHR30451:SF5 33 794 1.2E-217 T 14-09-2016 PAJ_RS14345 36d6fd47609093c587a83cd8f14dac06 813 PANTHER PTHR30451 33 794 1.2E-217 T 14-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PAJ_RS14345 36d6fd47609093c587a83cd8f14dac06 813 Pfam PF13953 PapC C-terminal domain 717 774 2.6E-6 T 14-09-2016 IPR025949 PapC-like, C-terminal domain PAJ_RS13830 8fb13c7526569eac25d242b48b974136 124 Pfam PF11990 Protein of unknown function (DUF3487) 4 115 1.5E-33 T 14-09-2016 IPR021877 Protein of unknown function DUF3487 PAJ_RS13830 8fb13c7526569eac25d242b48b974136 124 TIGRFAM TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family 4 114 3.3E-38 T 14-09-2016 IPR021877 Protein of unknown function DUF3487 PAJ_RS12920 f64ff690c82a370c4ce934e11989977e 423 PANTHER PTHR28004 14 423 2.0E-89 T 14-09-2016 PAJ_RS12920 f64ff690c82a370c4ce934e11989977e 423 SUPERFAMILY SSF51419 55 268 5.23E-23 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS12920 f64ff690c82a370c4ce934e11989977e 423 PANTHER PTHR28004:SF1 14 423 2.0E-89 T 14-09-2016 PAJ_RS12920 f64ff690c82a370c4ce934e11989977e 423 SMART SM01119 312 410 1.3E-28 T 14-09-2016 IPR026956 D-serine dehydratase-like domain PAJ_RS12920 f64ff690c82a370c4ce934e11989977e 423 Pfam PF14031 Putative serine dehydratase domain 312 408 5.9E-13 T 14-09-2016 IPR026956 D-serine dehydratase-like domain PAJ_RS12920 f64ff690c82a370c4ce934e11989977e 423 Pfam PF01168 Alanine racemase, N-terminal domain 54 241 4.6E-12 T 14-09-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PAJ_RS12920 f64ff690c82a370c4ce934e11989977e 423 Gene3D G3DSA:3.20.20.10 55 208 3.3E-8 T 14-09-2016 IPR029066 PLP-binding barrel PAJ_RS11030 7c859917a49a70a6264e2c527b404946 458 Gene3D G3DSA:3.40.190.10 75 154 4.3E-22 T 14-09-2016 PAJ_RS11030 7c859917a49a70a6264e2c527b404946 458 Gene3D G3DSA:3.40.190.10 346 404 4.3E-22 T 14-09-2016 PAJ_RS11030 7c859917a49a70a6264e2c527b404946 458 PANTHER PTHR30061 2 451 4.3E-40 T 14-09-2016 PAJ_RS11030 7c859917a49a70a6264e2c527b404946 458 Pfam PF01547 Bacterial extracellular solute-binding protein 53 357 4.9E-26 T 14-09-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 PAJ_RS11030 7c859917a49a70a6264e2c527b404946 458 PANTHER PTHR30061:SF24 2 451 4.3E-40 T 14-09-2016 PAJ_RS11030 7c859917a49a70a6264e2c527b404946 458 SUPERFAMILY SSF53850 55 449 6.64E-54 T 14-09-2016 PAJ_RS11030 7c859917a49a70a6264e2c527b404946 458 Gene3D G3DSA:3.40.190.10 156 345 3.2E-24 T 14-09-2016 PAJ_RS14720 f5e0b237ebce1ce7c6c37c01e6a11d9e 198 PANTHER PTHR34413 11 198 2.0E-14 T 14-09-2016 PAJ_RS14720 f5e0b237ebce1ce7c6c37c01e6a11d9e 198 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 78 198 6.0E-21 T 14-09-2016 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly PAJ_RS11365 6e31640ceb082554c962c6e2add5bb25 277 PANTHER PTHR30406:SF7 6 277 1.2E-199 T 14-09-2016 PAJ_RS11365 6e31640ceb082554c962c6e2add5bb25 277 SUPERFAMILY SSF161098 17 266 7.06E-59 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11365 6e31640ceb082554c962c6e2add5bb25 277 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 5 269 1.1E-111 T 14-09-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 PAJ_RS11365 6e31640ceb082554c962c6e2add5bb25 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 274 1.5E-32 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11365 6e31640ceb082554c962c6e2add5bb25 277 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 9 271 1.1E-111 T 14-09-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 PAJ_RS11365 6e31640ceb082554c962c6e2add5bb25 277 Gene3D G3DSA:1.10.3720.10 19 273 1.7E-55 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS11365 6e31640ceb082554c962c6e2add5bb25 277 PANTHER PTHR30406 6 277 1.2E-199 T 14-09-2016 PAJ_RS11145 083186e192527c17ffb61f20b7f299b4 150 Gene3D G3DSA:3.40.50.620 1 145 8.4E-30 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS11145 083186e192527c17ffb61f20b7f299b4 150 Pfam PF00582 Universal stress protein family 1 145 8.7E-25 T 14-09-2016 IPR006016 UspA GO:0006950 PAJ_RS11145 083186e192527c17ffb61f20b7f299b4 150 PRINTS PR01438 Universal stress protein signature 125 147 4.4E-11 T 14-09-2016 IPR006015 Universal stress protein A PAJ_RS11145 083186e192527c17ffb61f20b7f299b4 150 PRINTS PR01438 Universal stress protein signature 1 17 4.4E-11 T 14-09-2016 IPR006015 Universal stress protein A PAJ_RS11145 083186e192527c17ffb61f20b7f299b4 150 PRINTS PR01438 Universal stress protein signature 107 119 4.4E-11 T 14-09-2016 IPR006015 Universal stress protein A PAJ_RS11145 083186e192527c17ffb61f20b7f299b4 150 PANTHER PTHR31964 1 145 6.6E-24 T 14-09-2016 PAJ_RS11145 083186e192527c17ffb61f20b7f299b4 150 SUPERFAMILY SSF52402 1 145 1.26E-27 T 14-09-2016 PAJ_RS19060 c498b20a2126944f89c48f4f964834d4 550 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 7 547 1.5E-209 T 14-09-2016 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 PAJ_RS19060 c498b20a2126944f89c48f4f964834d4 550 PANTHER PTHR10110:SF120 1 540 4.1E-197 T 14-09-2016 PAJ_RS19060 c498b20a2126944f89c48f4f964834d4 550 Pfam PF00999 Sodium/hydrogen exchanger family 7 422 4.8E-77 T 14-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PAJ_RS19060 c498b20a2126944f89c48f4f964834d4 550 PANTHER PTHR10110 1 540 4.1E-197 T 14-09-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 PAJ_RS14800 b6209ce2f70dd15f18e4cd53b0ff72f6 194 Pfam PF16452 Bacteriophage CI repressor C-terminal domain 91 190 1.2E-31 T 14-09-2016 IPR032499 Bacteriophage CI repressor, C-terminal GO:0051259 PAJ_RS14800 b6209ce2f70dd15f18e4cd53b0ff72f6 194 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 16 78 9.2E-25 T 14-09-2016 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 PANTHER PTHR22777 1 515 2.2E-281 T 14-09-2016 PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 Pfam PF00571 CBS domain 306 357 3.1E-4 T 14-09-2016 IPR000644 CBS domain PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 Pfam PF00571 CBS domain 372 421 5.6E-9 T 14-09-2016 IPR000644 CBS domain PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 Pfam PF03741 Integral membrane protein TerC family 15 204 2.3E-47 T 14-09-2016 IPR005496 Integral membrane protein TerC GO:0016021 PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 Gene3D G3DSA:3.10.580.10 290 414 4.0E-16 T 14-09-2016 PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 Gene3D G3DSA:3.30.465.10 415 515 3.8E-24 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 PANTHER PTHR22777:SF14 1 515 2.2E-281 T 14-09-2016 PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 SUPERFAMILY SSF56176 436 520 7.63E-19 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 SUPERFAMILY SSF54631 291 423 2.65E-26 T 14-09-2016 PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 Pfam PF03471 Transporter associated domain 441 516 2.6E-18 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 SMART SM00116 373 421 0.85 T 14-09-2016 IPR000644 CBS domain PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 SMART SM00116 312 360 0.27 T 14-09-2016 IPR000644 CBS domain PAJ_RS09970 36d800ac492f4a19fc6c2cca9d15dc2d 525 SMART SM01091 438 517 1.4E-21 T 14-09-2016 IPR005170 Transporter-associated domain PAJ_RS06210 5da552caf40444bb0522a4448eed48c5 352 PANTHER PTHR30578:SF0 3 351 1.3E-157 T 14-09-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 PAJ_RS06210 5da552caf40444bb0522a4448eed48c5 352 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 8 349 1.9E-142 T 14-09-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 PAJ_RS06210 5da552caf40444bb0522a4448eed48c5 352 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 3 350 28.327 T 14-09-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 PAJ_RS06210 5da552caf40444bb0522a4448eed48c5 352 Pfam PF03116 NQR2, RnfD, RnfE family 6 348 1.3E-105 T 14-09-2016 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 PAJ_RS06210 5da552caf40444bb0522a4448eed48c5 352 PANTHER PTHR30578 3 351 1.3E-157 T 14-09-2016 PAJ_RS05875 54c45e236c5c6bc1147cdfa59fb17e09 425 PANTHER PTHR30508 31 420 7.1E-127 T 14-09-2016 PAJ_RS05875 54c45e236c5c6bc1147cdfa59fb17e09 425 PANTHER PTHR30508:SF0 31 420 7.1E-127 T 14-09-2016 PAJ_RS05875 54c45e236c5c6bc1147cdfa59fb17e09 425 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 135 411 2.7E-87 T 14-09-2016 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 PAJ_RS05875 54c45e236c5c6bc1147cdfa59fb17e09 425 SUPERFAMILY SSF101960 13 421 6.8E-111 T 14-09-2016 PAJ_RS05875 54c45e236c5c6bc1147cdfa59fb17e09 425 Pfam PF01458 Uncharacterized protein family (UPF0051) 172 395 7.8E-72 T 14-09-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 PAJ_RS11740 091b03feade7fe9cfd24138e31bc6b16 292 SUPERFAMILY SSF103481 40 140 1.57E-12 T 14-09-2016 PAJ_RS11740 091b03feade7fe9cfd24138e31bc6b16 292 Pfam PF00892 EamA-like transporter family 144 277 8.9E-14 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS11740 091b03feade7fe9cfd24138e31bc6b16 292 Pfam PF00892 EamA-like transporter family 7 136 7.8E-14 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS11740 091b03feade7fe9cfd24138e31bc6b16 292 PANTHER PTHR12715 1 291 1.1E-41 T 14-09-2016 PAJ_RS11740 091b03feade7fe9cfd24138e31bc6b16 292 SUPERFAMILY SSF103481 180 278 1.24E-12 T 14-09-2016 PAJ_RS06495 4e62e1237e392cc3d54550f995221302 145 SUPERFAMILY SSF53933 39 143 1.02E-34 T 14-09-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 PAJ_RS06495 4e62e1237e392cc3d54550f995221302 145 Gene3D G3DSA:3.10.450.30 39 144 1.0E-40 T 14-09-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 PAJ_RS06495 4e62e1237e392cc3d54550f995221302 145 PRINTS PR00117 Barnase signature 42 59 6.9E-28 T 14-09-2016 IPR001887 Barnase GO:0003723|GO:0004521 PAJ_RS06495 4e62e1237e392cc3d54550f995221302 145 PRINTS PR00117 Barnase signature 103 122 6.9E-28 T 14-09-2016 IPR001887 Barnase GO:0003723|GO:0004521 PAJ_RS06495 4e62e1237e392cc3d54550f995221302 145 PRINTS PR00117 Barnase signature 82 100 6.9E-28 T 14-09-2016 IPR001887 Barnase GO:0003723|GO:0004521 PAJ_RS06495 4e62e1237e392cc3d54550f995221302 145 PRINTS PR00117 Barnase signature 62 79 6.9E-28 T 14-09-2016 IPR001887 Barnase GO:0003723|GO:0004521 PAJ_RS06495 4e62e1237e392cc3d54550f995221302 145 PRINTS PR00117 Barnase signature 125 143 6.9E-28 T 14-09-2016 IPR001887 Barnase GO:0003723|GO:0004521 PAJ_RS06495 4e62e1237e392cc3d54550f995221302 145 Pfam PF00545 ribonuclease 55 142 1.3E-22 T 14-09-2016 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 PAJ_RS15480 74f52c4be89d4486d3f9dd4761a37d46 87 SUPERFAMILY SSF159871 4 87 5.62E-25 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS15480 74f52c4be89d4486d3f9dd4761a37d46 87 Pfam PF07338 Protein of unknown function (DUF1471) 34 87 2.5E-21 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS15480 74f52c4be89d4486d3f9dd4761a37d46 87 Gene3D G3DSA:3.30.1660.10 18 87 5.2E-28 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS15480 74f52c4be89d4486d3f9dd4761a37d46 87 PANTHER PTHR34156:SF5 2 87 3.1E-37 T 14-09-2016 PAJ_RS15480 74f52c4be89d4486d3f9dd4761a37d46 87 PANTHER PTHR34156 2 87 3.1E-37 T 14-09-2016 PAJ_RS13050 78c32f8d064f168f6dcd6863d229628f 109 SUPERFAMILY SSF158452 1 106 6.15E-35 T 14-09-2016 IPR023376 YqcC-like domain PAJ_RS13050 78c32f8d064f168f6dcd6863d229628f 109 Gene3D G3DSA:1.20.1440.40 2 104 1.9E-35 T 14-09-2016 IPR023376 YqcC-like domain PAJ_RS13050 78c32f8d064f168f6dcd6863d229628f 109 PIRSF PIRSF006257 1 108 1.4E-35 T 14-09-2016 IPR007384 Protein of unknown function UCP006257 PAJ_RS13050 78c32f8d064f168f6dcd6863d229628f 109 PANTHER PTHR39586 2 109 5.2E-35 T 14-09-2016 PAJ_RS13050 78c32f8d064f168f6dcd6863d229628f 109 Pfam PF04287 tRNA pseudouridine synthase C 8 103 4.1E-32 T 14-09-2016 IPR023376 YqcC-like domain PAJ_RS18460 8253e87724e25bb81cfd317720e2aab6 207 Pfam PF01810 LysE type translocator 15 202 2.8E-42 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS18460 8253e87724e25bb81cfd317720e2aab6 207 PANTHER PTHR30086:SF14 1 207 3.1E-112 T 14-09-2016 PAJ_RS18460 8253e87724e25bb81cfd317720e2aab6 207 PIRSF PIRSF006324 1 205 1.4E-52 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS18460 8253e87724e25bb81cfd317720e2aab6 207 PANTHER PTHR30086 1 207 3.1E-112 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PAJ_RS19615 dc093882d3b7ed673f50dbfbf38e1453 153 PANTHER PTHR35335:SF1 1 120 1.8E-34 T 14-09-2016 PAJ_RS19615 dc093882d3b7ed673f50dbfbf38e1453 153 Pfam PF04186 FxsA cytoplasmic membrane protein 8 109 1.5E-32 T 14-09-2016 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 PAJ_RS19615 dc093882d3b7ed673f50dbfbf38e1453 153 PANTHER PTHR35335 1 120 1.8E-34 T 14-09-2016 PAJ_RS05385 f7163be6639ff2d2495e4131086f83a5 97 SUPERFAMILY SSF51658 5 73 7.75E-8 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS05385 f7163be6639ff2d2495e4131086f83a5 97 Gene3D G3DSA:3.20.20.150 1 71 3.8E-6 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS05385 f7163be6639ff2d2495e4131086f83a5 97 PANTHER PTHR12110:SF18 1 70 2.7E-32 T 14-09-2016 PAJ_RS05385 f7163be6639ff2d2495e4131086f83a5 97 PANTHER PTHR12110 1 70 2.7E-32 T 14-09-2016 PAJ_RS09375 37771738b13b3e6c852977dc01a49bd7 294 SUPERFAMILY SSF161098 81 272 1.54E-24 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09375 37771738b13b3e6c852977dc01a49bd7 294 PANTHER PTHR30043:SF5 1 286 5.0E-153 T 14-09-2016 PAJ_RS09375 37771738b13b3e6c852977dc01a49bd7 294 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 27 279 5.9E-78 T 14-09-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 PAJ_RS09375 37771738b13b3e6c852977dc01a49bd7 294 PANTHER PTHR30043 1 286 5.0E-153 T 14-09-2016 PAJ_RS09375 37771738b13b3e6c852977dc01a49bd7 294 Gene3D G3DSA:1.10.3720.10 82 279 9.4E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09375 37771738b13b3e6c852977dc01a49bd7 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 278 2.3E-7 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS20235 acc4382a4a656f2bbb31892d797618ee 723 Pfam PF07728 AAA domain (dynein-related subfamily) 441 572 2.8E-10 T 14-09-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 PAJ_RS20235 acc4382a4a656f2bbb31892d797618ee 723 Gene3D G3DSA:3.40.50.300 297 317 7.6E-10 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20235 acc4382a4a656f2bbb31892d797618ee 723 Gene3D G3DSA:3.40.50.300 442 573 7.6E-10 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20235 acc4382a4a656f2bbb31892d797618ee 723 PANTHER PTHR37291 136 722 6.6E-48 T 14-09-2016 PAJ_RS20235 acc4382a4a656f2bbb31892d797618ee 723 Gene3D G3DSA:3.40.50.300 267 296 5.8E-4 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20235 acc4382a4a656f2bbb31892d797618ee 723 PANTHER PTHR37291:SF1 136 722 6.6E-48 T 14-09-2016 PAJ_RS20235 acc4382a4a656f2bbb31892d797618ee 723 SUPERFAMILY SSF52540 455 574 1.96E-8 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20235 acc4382a4a656f2bbb31892d797618ee 723 SUPERFAMILY SSF52540 288 322 1.96E-8 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS01410 4b762e0872cdeab7abedcde72050c0a6 98 Gene3D G3DSA:3.30.10.10 54 95 2.7E-4 T 14-09-2016 PAJ_RS01410 4b762e0872cdeab7abedcde72050c0a6 98 Pfam PF11720 Peptidase inhibitor I78 family 39 98 4.7E-11 T 14-09-2016 IPR021719 Proteinase inhibitor I78 PAJ_RS10720 9b2ad08aacc6da2762f76c781d6cdfa8 213 SUPERFAMILY SSF47616 90 208 1.11E-10 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS10720 9b2ad08aacc6da2762f76c781d6cdfa8 213 PANTHER PTHR11260:SF322 1 120 5.8E-49 T 14-09-2016 PAJ_RS10720 9b2ad08aacc6da2762f76c781d6cdfa8 213 Pfam PF14834 Glutathione S-transferase, C-terminal domain 95 209 9.2E-51 T 14-09-2016 PAJ_RS10720 9b2ad08aacc6da2762f76c781d6cdfa8 213 Pfam PF13417 Glutathione S-transferase, N-terminal domain 15 86 6.2E-13 T 14-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PAJ_RS10720 9b2ad08aacc6da2762f76c781d6cdfa8 213 Gene3D G3DSA:3.40.30.10 5 104 2.9E-24 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS10720 9b2ad08aacc6da2762f76c781d6cdfa8 213 PANTHER PTHR11260 1 120 5.8E-49 T 14-09-2016 PAJ_RS10720 9b2ad08aacc6da2762f76c781d6cdfa8 213 Gene3D G3DSA:1.20.1050.10 105 211 6.0E-43 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS10720 9b2ad08aacc6da2762f76c781d6cdfa8 213 SUPERFAMILY SSF52833 13 93 3.14E-18 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS16360 e45be3f41be8862263d0ee27101a2369 327 PIRSF PIRSF003097 26 323 6.4E-96 T 14-09-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 PAJ_RS16360 e45be3f41be8862263d0ee27101a2369 327 Pfam PF02687 FtsX-like permease family 202 317 1.0E-10 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PAJ_RS16360 e45be3f41be8862263d0ee27101a2369 327 PANTHER PTHR30489 8 326 1.4E-57 T 14-09-2016 PAJ_RS16360 e45be3f41be8862263d0ee27101a2369 327 TIGRFAM TIGR00439 ftsX: putative protein insertion permease FtsX 27 326 7.9E-135 T 14-09-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 PAJ_RS00915 6e3700dc5b9e802b1b065e15ef415890 499 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 32 465 6.3E-81 T 14-09-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PAJ_RS00915 6e3700dc5b9e802b1b065e15ef415890 499 PANTHER PTHR30618 18 479 8.2E-254 T 14-09-2016 PAJ_RS00915 6e3700dc5b9e802b1b065e15ef415890 499 PANTHER PTHR30618:SF6 18 479 8.2E-254 T 14-09-2016 PAJ_RS12120 39329f5e7682fae249aff8053a5ab0f9 97 SUPERFAMILY SSF54285 4 78 5.23E-26 T 14-09-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp PAJ_RS12120 39329f5e7682fae249aff8053a5ab0f9 97 Pfam PF03658 RnfH family Ubiquitin 4 86 4.9E-35 T 14-09-2016 IPR005346 RnfH protein PAJ_RS12120 39329f5e7682fae249aff8053a5ab0f9 97 Hamap MF_00460 Protein RnfH [rnfH]. 4 94 25.742 T 14-09-2016 IPR005346 RnfH protein PAJ_RS12120 39329f5e7682fae249aff8053a5ab0f9 97 PANTHER PTHR37483 1 94 5.4E-41 T 14-09-2016 PAJ_RS12120 39329f5e7682fae249aff8053a5ab0f9 97 PANTHER PTHR37483:SF1 1 94 5.4E-41 T 14-09-2016 PAJ_RS12120 39329f5e7682fae249aff8053a5ab0f9 97 Gene3D G3DSA:3.10.20.280 3 88 8.3E-37 T 14-09-2016 IPR005346 RnfH protein PAJ_RS10090 f475da57544504e2806341ba5cf613a1 319 PANTHER PTHR31752:SF13 102 316 2.3E-54 T 14-09-2016 PAJ_RS10090 f475da57544504e2806341ba5cf613a1 319 PANTHER PTHR31752 102 316 2.3E-54 T 14-09-2016 PAJ_RS10090 f475da57544504e2806341ba5cf613a1 319 Pfam PF03547 Membrane transport protein 170 311 5.0E-16 T 14-09-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 PAJ_RS10090 f475da57544504e2806341ba5cf613a1 319 Pfam PF03547 Membrane transport protein 16 154 6.5E-10 T 14-09-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 PAJ_RS10380 f30698e8a6ef96ec0d8cbda5aad610da 485 PANTHER PTHR30624:SF4 16 484 4.7E-193 T 14-09-2016 PAJ_RS10380 f30698e8a6ef96ec0d8cbda5aad610da 485 SUPERFAMILY SSF111283 27 482 4.45E-114 T 14-09-2016 PAJ_RS10380 f30698e8a6ef96ec0d8cbda5aad610da 485 Pfam PF01523 Putative modulator of DNA gyrase 42 334 4.4E-49 T 14-09-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS10380 f30698e8a6ef96ec0d8cbda5aad610da 485 PIRSF PIRSF004919 22 483 8.3E-124 T 14-09-2016 IPR025502 TldD KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS10380 f30698e8a6ef96ec0d8cbda5aad610da 485 PANTHER PTHR30624 16 484 4.7E-193 T 14-09-2016 PAJ_RS02765 d63b0061471f917a8e84ce7201c032b9 97 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 17 92 4.7E-29 T 14-09-2016 IPR011846 Cyd operon protein YbgE PAJ_RS02765 d63b0061471f917a8e84ce7201c032b9 97 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 7 92 1.4E-31 T 14-09-2016 IPR011846 Cyd operon protein YbgE PAJ_RS16085 921aefe1fb8f829d88a63cefb49ab3b7 130 Pfam PF10748 Protein of unknown function (DUF2531) 6 125 2.6E-12 T 14-09-2016 IPR019684 Protein of unknown function DUF2531 PAJ_RS17075 2c3dfd6e81346eae951f402e61a4701f 79 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 17.583 T 14-09-2016 IPR009252 Cell division protein ZapB GO:0000917|GO:0005737|GO:0043093 PAJ_RS17075 2c3dfd6e81346eae951f402e61a4701f 79 Pfam PF06005 Protein of unknown function (DUF904) 1 78 1.3E-27 T 14-09-2016 IPR009252 Cell division protein ZapB GO:0000917|GO:0005737|GO:0043093 PAJ_RS14350 fa85a8a094ee7027a0ce6f055d259d74 323 Pfam PF05229 Spore Coat Protein U domain 18 160 1.8E-12 T 14-09-2016 IPR007893 Spore coat protein U PAJ_RS14350 fa85a8a094ee7027a0ce6f055d259d74 323 Pfam PF05229 Spore Coat Protein U domain 187 319 1.7E-26 T 14-09-2016 IPR007893 Spore coat protein U PAJ_RS14350 fa85a8a094ee7027a0ce6f055d259d74 323 SMART SM00972 94 160 1.8E-5 T 14-09-2016 IPR007893 Spore coat protein U PAJ_RS14350 fa85a8a094ee7027a0ce6f055d259d74 323 SMART SM00972 257 320 1.5E-10 T 14-09-2016 IPR007893 Spore coat protein U PAJ_RS14350 fa85a8a094ee7027a0ce6f055d259d74 323 PANTHER PTHR37089 117 323 1.8E-21 T 14-09-2016 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 PANTHER PTHR11533:SF152 609 870 0.0 T 14-09-2016 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 PANTHER PTHR11533:SF152 6 586 0.0 T 14-09-2016 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 Gene3D G3DSA:1.10.390.10 308 451 1.3E-33 T 14-09-2016 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 SUPERFAMILY SSF55486 204 450 2.56E-74 T 14-09-2016 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 Gene3D G3DSA:1.25.50.10 547 870 9.7E-125 T 14-09-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 SUPERFAMILY SSF63737 1 193 1.44E-43 T 14-09-2016 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 Pfam PF11940 Domain of unknown function (DUF3458) 460 827 1.2E-138 T 14-09-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 PANTHER PTHR11533 609 870 0.0 T 14-09-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 Pfam PF01433 Peptidase family M1 111 384 3.1E-67 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 PANTHER PTHR11533 6 586 0.0 T 14-09-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 869 0.0 T 14-09-2016 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 258 268 1.5E-7 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 176 191 1.5E-7 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 313 325 1.5E-7 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PAJ_RS03735 b3375a50dcb5a810c263ad777642c0ea 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 294 309 1.5E-7 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PAJ_RS13275 c747603b439f8472faeed2df45447476 137 Pfam PF07254 Membrane-bound toxin component of toxin-antitoxin system 4 128 7.9E-23 T 14-09-2016 IPR009883 Toxin CptA PAJ_RS13275 c747603b439f8472faeed2df45447476 137 ProDom PD083358 MEMBRANE YGFX INNER SIMILAR ECS3768 Y3281 ESCHERICHIA TRANSMEMBRANE YPO0896A STY3202 79 133 0.002 T 14-09-2016 IPR009883 Toxin CptA PAJ_RS01945 08885f1a3c98de99fa461c10fbe7b047 110 ProDom PD057827 ZN-RIBBON HI1126 PM0127 TRANSMEMBRANE ORF196EGC129 MEMBRANE SO2423 GLL0157 1 29 0.001 T 14-09-2016 PAJ_RS16310 73e7416bea727408224dbf76b01aebb6 295 SUPERFAMILY SSF161098 56 283 1.57E-51 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16310 73e7416bea727408224dbf76b01aebb6 295 PANTHER PTHR32243:SF13 5 293 1.2E-108 T 14-09-2016 PAJ_RS16310 73e7416bea727408224dbf76b01aebb6 295 Gene3D G3DSA:1.10.3720.10 62 291 6.4E-52 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16310 73e7416bea727408224dbf76b01aebb6 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 292 7.2E-16 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16310 73e7416bea727408224dbf76b01aebb6 295 PANTHER PTHR32243 5 293 1.2E-108 T 14-09-2016 PAJ_RS14285 cedbe6975d4dd7c2eb3b5c65e10f2c4b 312 Gene3D G3DSA:3.40.190.10 143 253 1.8E-24 T 14-09-2016 PAJ_RS14285 cedbe6975d4dd7c2eb3b5c65e10f2c4b 312 SMART SM00062 64 297 4.2E-24 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS14285 cedbe6975d4dd7c2eb3b5c65e10f2c4b 312 SUPERFAMILY SSF53850 65 294 1.09E-42 T 14-09-2016 PAJ_RS14285 cedbe6975d4dd7c2eb3b5c65e10f2c4b 312 Gene3D G3DSA:3.40.190.10 66 142 2.0E-22 T 14-09-2016 PAJ_RS14285 cedbe6975d4dd7c2eb3b5c65e10f2c4b 312 Gene3D G3DSA:3.40.190.10 260 294 2.0E-22 T 14-09-2016 PAJ_RS14285 cedbe6975d4dd7c2eb3b5c65e10f2c4b 312 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 65 294 1.3E-37 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS09325 5c64de9b9adbb8921e7dae19aa067fb2 268 SUPERFAMILY SSF57997 78 243 2.4E-14 T 14-09-2016 PAJ_RS05420 1bc950a465417fea5afdd769abc44258 183 Gene3D G3DSA:3.40.630.30 63 152 3.6E-16 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05420 1bc950a465417fea5afdd769abc44258 183 SUPERFAMILY SSF55729 70 159 2.79E-15 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS05420 1bc950a465417fea5afdd769abc44258 183 Pfam PF13508 Acetyltransferase (GNAT) domain 75 153 2.4E-6 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS18780 0fa4f1d0416ecd59064259dcf24e916b 71 Pfam PF07338 Protein of unknown function (DUF1471) 26 71 3.0E-8 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS18780 0fa4f1d0416ecd59064259dcf24e916b 71 SUPERFAMILY SSF159871 6 71 2.62E-12 T 14-09-2016 IPR010854 Domain of unknown function DUF1471 PAJ_RS18780 0fa4f1d0416ecd59064259dcf24e916b 71 Gene3D G3DSA:3.30.1660.10 25 71 3.2E-10 T 14-09-2016 IPR025543 Dodecin-like PAJ_RS20415 d75f2d66f9a46a5c557ac072b74db99a 85 SUPERFAMILY SSF47336 3 83 1.96E-11 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS20415 d75f2d66f9a46a5c557ac072b74db99a 85 Gene3D G3DSA:1.10.1200.10 2 84 2.4E-16 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS20415 d75f2d66f9a46a5c557ac072b74db99a 85 Pfam PF00550 Phosphopantetheine attachment site 8 62 1.4E-7 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS09945 70f086102fd2db05c3b0b35705150190 378 Pfam PF14897 EpsG family 33 366 2.1E-35 T 14-09-2016 PAJ_RS07490 89154aac1f3eae6cd24f3e61d17ffcee 221 PANTHER PTHR31088:SF7 2 217 4.3E-123 T 14-09-2016 PAJ_RS07490 89154aac1f3eae6cd24f3e61d17ffcee 221 PANTHER PTHR31088 2 217 4.3E-123 T 14-09-2016 PAJ_RS07490 89154aac1f3eae6cd24f3e61d17ffcee 221 Pfam PF04012 PspA/IM30 family 2 216 1.3E-50 T 14-09-2016 IPR007157 PspA/IM30 PAJ_RS07490 89154aac1f3eae6cd24f3e61d17ffcee 221 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 218 2.9E-92 T 14-09-2016 IPR014319 Phage shock protein, PspA PAJ_RS01420 fa8c8e14b255cad4b42e2f1baa3ea4a2 83 Pfam PF10798 Biofilm development protein YmgB/AriR 26 73 9.3E-11 T 14-09-2016 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 PAJ_RS19800 19c152337b09e6b675e187d264c8c739 98 Gene3D G3DSA:3.30.750.24 8 94 1.1E-14 T 14-09-2016 IPR002645 STAS domain PAJ_RS19800 19c152337b09e6b675e187d264c8c739 98 Pfam PF13466 STAS domain 14 91 5.6E-17 T 14-09-2016 IPR002645 STAS domain PAJ_RS19800 19c152337b09e6b675e187d264c8c739 98 PANTHER PTHR35849 1 94 1.1E-27 T 14-09-2016 PAJ_RS19800 19c152337b09e6b675e187d264c8c739 98 SUPERFAMILY SSF52091 1 94 9.03E-16 T 14-09-2016 IPR002645 STAS domain PAJ_RS19800 19c152337b09e6b675e187d264c8c739 98 PANTHER PTHR35849:SF1 1 94 1.1E-27 T 14-09-2016 PAJ_RS11720 9741b10ace6aa041a41c656427e33ce6 257 Pfam PF12570 Protein of unknown function (DUF3750) 58 187 4.7E-53 T 14-09-2016 IPR022224 Protein of unknown function DUF3750 PAJ_RS01470 20ef1649f0980b7105f535d64cb89cbf 96 SUPERFAMILY SSF51182 1 94 1.78E-33 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS01470 20ef1649f0980b7105f535d64cb89cbf 96 PANTHER PTHR36540:SF1 1 95 1.3E-48 T 14-09-2016 PAJ_RS01470 20ef1649f0980b7105f535d64cb89cbf 96 PANTHER PTHR36540 1 95 1.3E-48 T 14-09-2016 PAJ_RS01470 20ef1649f0980b7105f535d64cb89cbf 96 Gene3D G3DSA:2.60.120.10 1 94 2.2E-37 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS01470 20ef1649f0980b7105f535d64cb89cbf 96 Pfam PF06865 Protein of unknown function (DUF1255) 3 93 1.9E-34 T 14-09-2016 IPR009664 Protein of unknown function DUF1255 PAJ_RS01470 20ef1649f0980b7105f535d64cb89cbf 96 Hamap MF_01537 UPF0345 protein YaiE [yaiE]. 1 94 25.878 T 14-09-2016 IPR009664 Protein of unknown function DUF1255 PAJ_RS09150 cd73d526e8896b69d37d50516c4749ad 247 Pfam PF07007 Protein of unknown function (DUF1311) 41 133 7.4E-15 T 14-09-2016 IPR009739 Protein of unknown function DUF1311 PAJ_RS05260 bc04997c645fb5c787df46fc40b76c37 279 Pfam PF00892 EamA-like transporter family 149 277 1.3E-8 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS05260 bc04997c645fb5c787df46fc40b76c37 279 Pfam PF00892 EamA-like transporter family 3 132 2.2E-11 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PAJ_RS05260 bc04997c645fb5c787df46fc40b76c37 279 SUPERFAMILY SSF103481 183 277 7.06E-10 T 14-09-2016 PAJ_RS05260 bc04997c645fb5c787df46fc40b76c37 279 PANTHER PTHR22911 1 279 5.9E-20 T 14-09-2016 PAJ_RS05260 bc04997c645fb5c787df46fc40b76c37 279 SUPERFAMILY SSF103481 42 136 2.62E-5 T 14-09-2016 PAJ_RS20760 fb28776bff1d3e0ffba532b0e0b41c0f 310 Gene3D G3DSA:1.10.10.10 9 101 6.6E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS20760 fb28776bff1d3e0ffba532b0e0b41c0f 310 SMART SM00862 23 100 2.6E-6 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS20760 fb28776bff1d3e0ffba532b0e0b41c0f 310 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 100 1.6E-8 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PAJ_RS20760 fb28776bff1d3e0ffba532b0e0b41c0f 310 SUPERFAMILY SSF46894 8 100 3.12E-11 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS08115 ed0ccca0bfbc5bfb44107fd3befabea1 152 PIRSF PIRSF020687 1 152 3.3E-50 T 14-09-2016 IPR009328 Protein of unknown function DUF986 PAJ_RS08115 ed0ccca0bfbc5bfb44107fd3befabea1 152 Hamap MF_01071 UPF0266 membrane protein YobD [yobD]. 1 152 25.265 T 14-09-2016 IPR009328 Protein of unknown function DUF986 PAJ_RS08115 ed0ccca0bfbc5bfb44107fd3befabea1 152 ProDom PD091196 MEMBRANE UPF0266 TRANSMEMBRANE INNER YOBD PLU2700 LMO0779 PM0830 YPO1755/Y2554/YP1637 LIN0773 27 148 3.0E-32 T 14-09-2016 IPR009328 Protein of unknown function DUF986 PAJ_RS08115 ed0ccca0bfbc5bfb44107fd3befabea1 152 Pfam PF06173 Protein of unknown function (DUF986) 4 150 2.5E-53 T 14-09-2016 IPR009328 Protein of unknown function DUF986 PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 PANTHER PTHR10264:SF27 1 297 7.7E-125 T 14-09-2016 PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 SMART SM00244 18 176 1.1E-58 T 14-09-2016 IPR001107 Band 7 domain PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 Pfam PF01145 SPFH domain / Band 7 family 22 203 1.0E-28 T 14-09-2016 IPR001107 Band 7 domain PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 PANTHER PTHR10264 1 297 7.7E-125 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 SUPERFAMILY SSF117892 49 183 3.01E-40 T 14-09-2016 IPR001107 Band 7 domain PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 PRINTS PR00721 Stomatin signature 73 94 1.9E-27 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 PRINTS PR00721 Stomatin signature 128 151 1.9E-27 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 PRINTS PR00721 Stomatin signature 152 170 1.9E-27 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 PRINTS PR00721 Stomatin signature 108 125 1.9E-27 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 PRINTS PR00721 Stomatin signature 171 192 1.9E-27 T 14-09-2016 IPR001972 Stomatin family GO:0016020 PAJ_RS01960 19058a7d6fceace8971a823f9654075b 304 ProSitePatterns PS01270 Band 7 protein family signature. 132 160 - T 14-09-2016 IPR018080 Band 7/stomatin-like, conserved site PAJ_RS11055 433578159ea8fb6a62e4e36f3f895fa8 170 SUPERFAMILY SSF49401 43 170 1.39E-17 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS11055 433578159ea8fb6a62e4e36f3f895fa8 170 Gene3D G3DSA:2.60.40.1090 32 170 4.4E-6 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS11055 433578159ea8fb6a62e4e36f3f895fa8 170 Pfam PF00419 Fimbrial protein 39 170 3.2E-17 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 SUPERFAMILY SSF103473 12 201 2.09E-64 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 SUPERFAMILY SSF103473 252 449 2.09E-64 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 Pfam PF07690 Major Facilitator Superfamily 22 413 4.7E-48 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 PRINTS PR01036 Tetracycline resistance protein TetB signature 21 45 4.2E-7 T 14-09-2016 PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 PRINTS PR01036 Tetracycline resistance protein TetB signature 306 330 4.2E-7 T 14-09-2016 PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 PRINTS PR01036 Tetracycline resistance protein TetB signature 404 423 4.2E-7 T 14-09-2016 PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 4.2E-7 T 14-09-2016 PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 PRINTS PR01036 Tetracycline resistance protein TetB signature 112 132 4.2E-7 T 14-09-2016 PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 PANTHER PTHR23501 9 450 3.4E-162 T 14-09-2016 PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 Gene3D G3DSA:1.20.1250.20 265 448 1.4E-19 T 14-09-2016 PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 Gene3D G3DSA:1.20.1250.20 15 201 2.6E-28 T 14-09-2016 PAJ_RS08150 839339336a368f1d5da930b2994ef880 453 PANTHER PTHR23501:SF5 9 450 3.4E-162 T 14-09-2016 PAJ_RS17745 1069be7a36ce81845e4acb77b00ab0ea 365 Pfam PF14486 Domain of unknown function (DUF4432) 39 346 2.6E-19 T 14-09-2016 IPR027839 Protein of unknown function DUF4432 PAJ_RS17745 1069be7a36ce81845e4acb77b00ab0ea 365 SUPERFAMILY SSF74650 42 342 1.79E-6 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PAJ_RS20510 1bcffbdf427885dfa4a7bbea99d316e6 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 289 1.1E-52 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PAJ_RS20510 1bcffbdf427885dfa4a7bbea99d316e6 321 SUPERFAMILY SSF52283 19 138 4.46E-31 T 14-09-2016 PAJ_RS20510 1bcffbdf427885dfa4a7bbea99d316e6 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 27 320 4.7E-26 T 14-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PAJ_RS20510 1bcffbdf427885dfa4a7bbea99d316e6 321 Gene3D G3DSA:3.40.50.720 26 113 2.6E-28 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20510 1bcffbdf427885dfa4a7bbea99d316e6 321 PANTHER PTHR10996 27 320 6.0E-94 T 14-09-2016 PAJ_RS20510 1bcffbdf427885dfa4a7bbea99d316e6 321 Gene3D G3DSA:3.40.50.720 114 289 8.8E-57 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS20510 1bcffbdf427885dfa4a7bbea99d316e6 321 SUPERFAMILY SSF51735 104 290 6.73E-50 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS03505 866392bdc485bf1306fdfd5abbde9c45 274 SUPERFAMILY SSF47090 197 270 6.12E-19 T 14-09-2016 IPR002477 Peptidoglycan binding-like PAJ_RS03505 866392bdc485bf1306fdfd5abbde9c45 274 SMART SM00644 32 175 1.1E-32 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS03505 866392bdc485bf1306fdfd5abbde9c45 274 SUPERFAMILY SSF55846 23 191 3.66E-54 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS03505 866392bdc485bf1306fdfd5abbde9c45 274 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 40 176 7.3E-21 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS03505 866392bdc485bf1306fdfd5abbde9c45 274 PANTHER PTHR30417 3 272 2.0E-76 T 14-09-2016 PAJ_RS03505 866392bdc485bf1306fdfd5abbde9c45 274 Gene3D G3DSA:3.40.80.10 33 194 1.7E-56 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PAJ_RS02250 cb8acebefd928ff28449f26dee2234b0 144 SUPERFAMILY SSF49401 1 143 2.58E-30 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS02250 cb8acebefd928ff28449f26dee2234b0 144 Pfam PF00419 Fimbrial protein 3 143 1.3E-4 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS02250 cb8acebefd928ff28449f26dee2234b0 144 Gene3D G3DSA:2.60.40.1090 1 143 6.6E-25 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS02250 cb8acebefd928ff28449f26dee2234b0 144 PANTHER PTHR33420 2 144 3.1E-18 T 14-09-2016 PAJ_RS19945 8adf4a3a2b81f0dfcc927129e3747ab0 294 Pfam PF01136 Peptidase family U32 92 196 1.3E-10 T 14-09-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PAJ_RS19945 8adf4a3a2b81f0dfcc927129e3747ab0 294 PANTHER PTHR30217 1 292 6.0E-170 T 14-09-2016 PAJ_RS19945 8adf4a3a2b81f0dfcc927129e3747ab0 294 PANTHER PTHR30217:SF8 1 292 6.0E-170 T 14-09-2016 PAJ_RS19785 b82914729261faf5a8b31a09c982cc2a 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 7.4E-103 T 14-09-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria PAJ_RS19785 b82914729261faf5a8b31a09c982cc2a 260 Pfam PF02405 Permease MlaE 45 256 4.1E-74 T 14-09-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 PAJ_RS19785 b82914729261faf5a8b31a09c982cc2a 260 PANTHER PTHR30188:SF4 1 260 3.9E-123 T 14-09-2016 PAJ_RS19785 b82914729261faf5a8b31a09c982cc2a 260 PANTHER PTHR30188 1 260 3.9E-123 T 14-09-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 PAJ_RS17335 a035ffa6daef7eafcc8ab3de9a7e4c90 144 Pfam PF12098 Protein of unknown function (DUF3574) 43 144 2.4E-37 T 14-09-2016 IPR021957 Protein of unknown function DUF3574 PAJ_RS18150 45f18320510afc8bf5b6011328bd5435 300 PANTHER PTHR30465:SF10 10 300 1.0E-139 T 14-09-2016 PAJ_RS18150 45f18320510afc8bf5b6011328bd5435 300 Gene3D G3DSA:1.10.3720.10 89 296 2.5E-29 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS18150 45f18320510afc8bf5b6011328bd5435 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 69 3.9E-15 T 14-09-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PAJ_RS18150 45f18320510afc8bf5b6011328bd5435 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 5.0E-28 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS18150 45f18320510afc8bf5b6011328bd5435 300 PANTHER PTHR30465 10 300 1.0E-139 T 14-09-2016 PAJ_RS18150 45f18320510afc8bf5b6011328bd5435 300 SUPERFAMILY SSF161098 93 280 1.57E-27 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS16025 04b4662ebf6c3164bd0475292d5f32bc 199 SUPERFAMILY SSF140931 41 196 4.97E-35 T 14-09-2016 IPR003812 Fido domain PAJ_RS16025 04b4662ebf6c3164bd0475292d5f32bc 199 Pfam PF02661 Fic/DOC family 57 152 5.7E-17 T 14-09-2016 IPR003812 Fido domain PAJ_RS16025 04b4662ebf6c3164bd0475292d5f32bc 199 PANTHER PTHR39560:SF1 1 196 2.1E-51 T 14-09-2016 PAJ_RS16025 04b4662ebf6c3164bd0475292d5f32bc 199 Gene3D G3DSA:1.10.3290.10 12 197 2.2E-55 T 14-09-2016 IPR003812 Fido domain PAJ_RS16025 04b4662ebf6c3164bd0475292d5f32bc 199 PANTHER PTHR39560 1 196 2.1E-51 T 14-09-2016 PAJ_RS07750 7ab4bb6e0cccbff13e098891aead94a6 140 PANTHER PTHR11049 1 135 2.4E-72 T 14-09-2016 PAJ_RS07750 7ab4bb6e0cccbff13e098891aead94a6 140 PANTHER PTHR11049:SF5 1 135 2.4E-72 T 14-09-2016 PAJ_RS07750 7ab4bb6e0cccbff13e098891aead94a6 140 SUPERFAMILY SSF54637 7 130 3.29E-38 T 14-09-2016 IPR029069 HotDog domain PAJ_RS07750 7ab4bb6e0cccbff13e098891aead94a6 140 Gene3D G3DSA:3.10.129.10 5 130 7.3E-42 T 14-09-2016 IPR029069 HotDog domain PAJ_RS07750 7ab4bb6e0cccbff13e098891aead94a6 140 Pfam PF03061 Thioesterase superfamily 26 98 7.3E-19 T 14-09-2016 IPR006683 Thioesterase domain PAJ_RS09305 b6daf87e10d6ec3f57824e2bf450c1fc 167 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 20 137 2.0E-26 T 14-09-2016 IPR017734 Type VI secretion system, lipoprotein SciN PAJ_RS09305 b6daf87e10d6ec3f57824e2bf450c1fc 167 PANTHER PTHR37625 3 156 4.0E-16 T 14-09-2016 PAJ_RS09305 b6daf87e10d6ec3f57824e2bf450c1fc 167 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 13 138 5.5E-26 T 14-09-2016 IPR017734 Type VI secretion system, lipoprotein SciN PAJ_RS10065 601aa5e13b9023e4c7cf3f3613aa1ba4 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 1.8E-99 T 14-09-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 PAJ_RS10065 601aa5e13b9023e4c7cf3f3613aa1ba4 266 PANTHER PTHR20858 1 266 6.1E-113 T 14-09-2016 PAJ_RS10065 601aa5e13b9023e4c7cf3f3613aa1ba4 266 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 3.2E-91 T 14-09-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 PAJ_RS10065 601aa5e13b9023e4c7cf3f3613aa1ba4 266 Gene3D G3DSA:3.40.1190.20 6 263 3.0E-97 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS10065 601aa5e13b9023e4c7cf3f3613aa1ba4 266 SUPERFAMILY SSF53613 5 266 4.52E-77 T 14-09-2016 IPR029056 Ribokinase-like PAJ_RS20115 e0f5c67f8e8052371a6656f2d279503b 358 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 356 9.8E-138 T 14-09-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 PAJ_RS20115 e0f5c67f8e8052371a6656f2d279503b 358 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 355 8.1E-75 T 14-09-2016 IPR005495 Permease LptG/LptF-related GO:0016021 PAJ_RS20115 e0f5c67f8e8052371a6656f2d279503b 358 PANTHER PTHR33529 1 358 3.8E-165 T 14-09-2016 PAJ_RS20115 e0f5c67f8e8052371a6656f2d279503b 358 PANTHER PTHR33529:SF1 1 358 3.8E-165 T 14-09-2016 PAJ_RS10935 0c30aae69cea4c8e21ed3c0e4d80c242 425 Gene3D G3DSA:2.40.160.60 26 425 2.0E-138 T 14-09-2016 PAJ_RS10935 0c30aae69cea4c8e21ed3c0e4d80c242 425 PANTHER PTHR35093:SF3 3 425 4.7E-243 T 14-09-2016 PAJ_RS10935 0c30aae69cea4c8e21ed3c0e4d80c242 425 SUPERFAMILY SSF56935 26 425 1.92E-108 T 14-09-2016 PAJ_RS10935 0c30aae69cea4c8e21ed3c0e4d80c242 425 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 17 425 2.0E-136 T 14-09-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) PAJ_RS10935 0c30aae69cea4c8e21ed3c0e4d80c242 425 PANTHER PTHR35093 3 425 4.7E-243 T 14-09-2016 PAJ_RS10970 668dea307685fbcbc06f8e63334cc755 77 PANTHER PTHR37531 2 74 1.1E-25 T 14-09-2016 PAJ_RS10970 668dea307685fbcbc06f8e63334cc755 77 Pfam PF04995 Heme exporter protein D (CcmD) 15 58 8.5E-18 T 14-09-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 PAJ_RS10970 668dea307685fbcbc06f8e63334cc755 77 PANTHER PTHR37531:SF1 2 74 1.1E-25 T 14-09-2016 PAJ_RS10970 668dea307685fbcbc06f8e63334cc755 77 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 57 9.0E-19 T 14-09-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 PAJ_RS16725 54072d3d9494827b26e5d52606c7fda5 125 TIGRFAM TIGR00494 crcB: protein CrcB 6 120 1.8E-32 T 14-09-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 PAJ_RS16725 54072d3d9494827b26e5d52606c7fda5 125 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 2.3E-23 T 14-09-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 PAJ_RS16725 54072d3d9494827b26e5d52606c7fda5 125 PANTHER PTHR28259 1 121 1.6E-35 T 14-09-2016 PAJ_RS16725 54072d3d9494827b26e5d52606c7fda5 125 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 18.185 T 14-09-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 PAJ_RS06290 473fdddc38f61ba564f5a3363cb63cdf 82 SUPERFAMILY SSF46894 11 71 7.14E-13 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PAJ_RS06290 473fdddc38f61ba564f5a3363cb63cdf 82 Pfam PF00196 Bacterial regulatory proteins, luxR family 14 67 6.7E-9 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS06290 473fdddc38f61ba564f5a3363cb63cdf 82 Gene3D G3DSA:1.10.10.10 14 71 8.9E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06290 473fdddc38f61ba564f5a3363cb63cdf 82 SMART SM00421 11 68 4.5E-4 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PAJ_RS07445 f1b7a817edc60ab374004e2520cc2c3c 243 SUPERFAMILY SSF53187 134 229 3.31E-32 T 14-09-2016 PAJ_RS07445 f1b7a817edc60ab374004e2520cc2c3c 243 SUPERFAMILY SSF53187 15 107 3.31E-32 T 14-09-2016 PAJ_RS07445 f1b7a817edc60ab374004e2520cc2c3c 243 Pfam PF00246 Zinc carboxypeptidase 44 157 5.9E-13 T 14-09-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 PAJ_RS07445 f1b7a817edc60ab374004e2520cc2c3c 243 Gene3D G3DSA:3.40.630.10 18 228 6.0E-38 T 14-09-2016 PAJ_RS02680 97e1e446b5f7007f53f932284cf6e9c1 242 Pfam PF06149 Protein of unknown function (DUF969) 8 224 1.6E-88 T 14-09-2016 IPR010374 Protein of unknown function DUF969 PAJ_RS02680 97e1e446b5f7007f53f932284cf6e9c1 242 PANTHER PTHR41293:SF1 2 242 8.3E-106 T 14-09-2016 PAJ_RS02680 97e1e446b5f7007f53f932284cf6e9c1 242 PANTHER PTHR41293 2 242 8.3E-106 T 14-09-2016 PAJ_RS14910 4e8d64aa46ea2cbcd2f25668fef91a48 117 Pfam PF10796 Sigma-S stabilisation anti-adaptor protein 1 87 4.6E-30 T 14-09-2016 IPR019732 Sigma-S stabilisation anti-adaptor protein GO:0005737 PAJ_RS11545 72088235461e9e47ebe174b6d9fe0d74 287 PANTHER PTHR30168 2 287 4.6E-148 T 14-09-2016 PAJ_RS11545 72088235461e9e47ebe174b6d9fe0d74 287 Pfam PF04228 Putative neutral zinc metallopeptidase 1 283 1.5E-133 T 14-09-2016 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative PAJ_RS00475 ca0ee32dd316a3d196172fe8c1f19c49 120 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 117 3.0E-47 T 14-09-2016 IPR008249 Uncharacterised protein family UPF0231 PAJ_RS00475 ca0ee32dd316a3d196172fe8c1f19c49 120 PIRSF PIRSF006287 1 120 2.1E-48 T 14-09-2016 IPR008249 Uncharacterised protein family UPF0231 PAJ_RS00475 ca0ee32dd316a3d196172fe8c1f19c49 120 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 119 29.682 T 14-09-2016 IPR008249 Uncharacterised protein family UPF0231 PAJ_RS00475 ca0ee32dd316a3d196172fe8c1f19c49 120 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 117 4.6E-43 T 14-09-2016 IPR008249 Uncharacterised protein family UPF0231 PAJ_RS19460 63a6bc484f9c8376fcdcaf202df56d3a 366 SUPERFAMILY SSF53822 55 340 7.36E-37 T 14-09-2016 IPR028082 Periplasmic binding protein-like I PAJ_RS19460 63a6bc484f9c8376fcdcaf202df56d3a 366 Pfam PF13407 Periplasmic binding protein domain 60 321 2.9E-27 T 14-09-2016 IPR025997 Periplasmic binding protein PAJ_RS19460 63a6bc484f9c8376fcdcaf202df56d3a 366 Gene3D G3DSA:3.40.50.2300 178 339 5.0E-9 T 14-09-2016 PAJ_RS19460 63a6bc484f9c8376fcdcaf202df56d3a 366 Gene3D G3DSA:3.40.50.2300 55 177 1.5E-19 T 14-09-2016 PAJ_RS07645 ea364b51e1ae62b90313756236dfe090 82 Pfam PF10692 Protein of unknown function (DUF2498) 5 81 7.7E-36 T 14-09-2016 IPR019633 Protein of unknown function DUF2498 PAJ_RS12250 af9878465a879a5de0e3b90be32644e3 314 Gene3D G3DSA:3.40.50.1980 146 307 1.7E-29 T 14-09-2016 PAJ_RS12250 af9878465a879a5de0e3b90be32644e3 314 Gene3D G3DSA:3.40.50.1980 29 145 1.2E-24 T 14-09-2016 PAJ_RS12250 af9878465a879a5de0e3b90be32644e3 314 PANTHER PTHR30532:SF4 1 306 1.7E-99 T 14-09-2016 PAJ_RS12250 af9878465a879a5de0e3b90be32644e3 314 SUPERFAMILY SSF53807 26 296 1.37E-59 T 14-09-2016 PAJ_RS12250 af9878465a879a5de0e3b90be32644e3 314 Pfam PF01497 Periplasmic binding protein 48 283 8.7E-25 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 PAJ_RS12250 af9878465a879a5de0e3b90be32644e3 314 PANTHER PTHR30532 1 306 1.7E-99 T 14-09-2016 PAJ_RS01455 1c2d702421f04298285492fe4634e8ba 239 Pfam PF09849 Uncharacterized protein conserved in bacteria (DUF2076) 1 235 8.3E-70 T 14-09-2016 IPR018648 Protein of unknown function DUF2076 PAJ_RS08315 8182ad595aeeb0168bcf728d0aec7e38 214 Pfam PF04391 Protein of unknown function (DUF533) 29 207 2.5E-50 T 14-09-2016 IPR007486 Inner membrane protein YebE PAJ_RS08315 8182ad595aeeb0168bcf728d0aec7e38 214 Gene3D G3DSA:1.10.3680.10 67 207 4.1E-12 T 14-09-2016 IPR029024 TerB-like PAJ_RS08315 8182ad595aeeb0168bcf728d0aec7e38 214 SUPERFAMILY SSF158682 71 207 2.22E-16 T 14-09-2016 IPR029024 TerB-like PAJ_RS17020 012a771d1b2e38bcb1388cb94ccdb509 298 Pfam PF02219 Methylenetetrahydrofolate reductase 17 291 7.5E-108 T 14-09-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 PAJ_RS17020 012a771d1b2e38bcb1388cb94ccdb509 298 Gene3D G3DSA:3.20.20.220 10 294 1.2E-107 T 14-09-2016 IPR029041 FAD-linked oxidoreductase-like PAJ_RS17020 012a771d1b2e38bcb1388cb94ccdb509 298 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 2.2E-104 T 14-09-2016 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 PAJ_RS17020 012a771d1b2e38bcb1388cb94ccdb509 298 SUPERFAMILY SSF51730 22 294 3.34E-96 T 14-09-2016 IPR029041 FAD-linked oxidoreductase-like PAJ_RS17020 012a771d1b2e38bcb1388cb94ccdb509 298 PANTHER PTHR21091 149 280 3.0E-45 T 14-09-2016 PAJ_RS14690 f5f0d0b133e364b236ca9f4bbc2d84a4 748 Pfam PF10145 Phage-related minor tail protein 210 398 7.1E-30 T 14-09-2016 IPR010090 Phage tail tape measure protein PAJ_RS14690 f5f0d0b133e364b236ca9f4bbc2d84a4 748 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 211 482 3.9E-42 T 14-09-2016 IPR010090 Phage tail tape measure protein PAJ_RS10780 8ef6b6b9cf49d733cd7aef77364aabe8 161 PANTHER PTHR36926 1 160 3.1E-84 T 14-09-2016 PAJ_RS10780 8ef6b6b9cf49d733cd7aef77364aabe8 161 PANTHER PTHR36926:SF1 1 160 3.1E-84 T 14-09-2016 PAJ_RS10780 8ef6b6b9cf49d733cd7aef77364aabe8 161 Pfam PF02674 Colicin V production protein 4 143 8.6E-38 T 14-09-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 PAJ_RS17835 f332790c5b9626d03bf33d13b780a9d5 445 PANTHER PTHR33989 3 428 2.9E-137 T 14-09-2016 PAJ_RS17835 f332790c5b9626d03bf33d13b780a9d5 445 PIRSF PIRSF006351 5 433 6.2E-133 T 14-09-2016 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 PAJ_RS17835 f332790c5b9626d03bf33d13b780a9d5 445 Pfam PF02378 Phosphotransferase system, EIIC 33 351 1.4E-50 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PAJ_RS17835 f332790c5b9626d03bf33d13b780a9d5 445 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 16 425 1.4E-109 T 14-09-2016 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 PAJ_RS17835 f332790c5b9626d03bf33d13b780a9d5 445 PANTHER PTHR33989:SF4 3 428 2.9E-137 T 14-09-2016 PAJ_RS13715 4568b15cdfdf70ba666f5cbb29fb6706 257 SUPERFAMILY SSF55144 18 255 2.09E-49 T 14-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase PAJ_RS13715 4568b15cdfdf70ba666f5cbb29fb6706 257 Pfam PF08975 Domain of unknown function (DUF1868) 36 152 2.8E-33 T 14-09-2016 IPR015069 Domain of unknown function DUF1868 PAJ_RS13715 4568b15cdfdf70ba666f5cbb29fb6706 257 Gene3D G3DSA:3.90.1140.10 15 256 8.0E-84 T 14-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase PAJ_RS03770 1a11bedfdeabeca5a2b500f49405bf50 433 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 332 409 3.8E-7 T 14-09-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain PAJ_RS03770 1a11bedfdeabeca5a2b500f49405bf50 433 Pfam PF01943 Polysaccharide biosynthesis protein 10 279 8.8E-32 T 14-09-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 145 33.642 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 PANTHER PTHR36918 1 156 1.3E-89 T 14-09-2016 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 PANTHER PTHR36918:SF1 1 156 1.3E-89 T 14-09-2016 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 Gene3D G3DSA:3.10.420.10 2 152 5.4E-65 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 SUPERFAMILY SSF54611 3 141 1.79E-53 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 73 93 1.4E-41 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 123 141 1.4E-41 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 97 119 1.4E-41 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 1.4E-41 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 7 147 1.2E-68 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS17175 a2030d31aaee3ab6de9b551e9efa7fd8 156 Pfam PF02556 Preprotein translocase subunit SecB 6 144 5.9E-58 T 14-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PAJ_RS01595 751adf5747e8a506c9b25ada55a5923c 139 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 4 135 23.616 T 14-09-2016 IPR011605 NusB antitermination factor GO:0006353 PAJ_RS01595 751adf5747e8a506c9b25ada55a5923c 139 Gene3D G3DSA:1.10.940.10 3 135 3.9E-45 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PAJ_RS01595 751adf5747e8a506c9b25ada55a5923c 139 PANTHER PTHR11078 1 139 2.0E-57 T 14-09-2016 IPR011605 NusB antitermination factor GO:0006353 PAJ_RS01595 751adf5747e8a506c9b25ada55a5923c 139 SUPERFAMILY SSF48013 3 135 1.2E-42 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PAJ_RS01595 751adf5747e8a506c9b25ada55a5923c 139 Pfam PF01029 NusB family 7 129 4.9E-35 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PAJ_RS01595 751adf5747e8a506c9b25ada55a5923c 139 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 6 130 3.6E-45 T 14-09-2016 IPR011605 NusB antitermination factor GO:0006353 PAJ_RS09345 fef304722530af43f163ae62c1ab678a 286 Gene3D G3DSA:3.20.20.70 1 286 4.9E-99 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS09345 fef304722530af43f163ae62c1ab678a 286 Pfam PF01116 Fructose-bisphosphate aldolase class-II 6 285 7.7E-94 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS09345 fef304722530af43f163ae62c1ab678a 286 SUPERFAMILY SSF51569 1 286 3.48E-88 T 14-09-2016 PAJ_RS09345 fef304722530af43f163ae62c1ab678a 286 PIRSF PIRSF001359 1 286 2.6E-100 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS09345 fef304722530af43f163ae62c1ab678a 286 PANTHER PTHR30304 1 286 2.2E-90 T 14-09-2016 PAJ_RS09345 fef304722530af43f163ae62c1ab678a 286 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS09345 fef304722530af43f163ae62c1ab678a 286 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 285 3.4E-81 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 2.6E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 2.6E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 2.6E-6 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 Pfam PF03466 LysR substrate binding domain 96 298 1.3E-25 T 14-09-2016 IPR005119 LysR, substrate-binding PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 5.1E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 PANTHER PTHR30537 5 315 4.5E-68 T 14-09-2016 PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 SUPERFAMILY SSF53850 97 302 1.99E-29 T 14-09-2016 PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 Gene3D G3DSA:3.40.190.10 181 262 2.2E-18 T 14-09-2016 PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 SUPERFAMILY SSF46785 9 117 2.1E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 PANTHER PTHR30537:SF26 5 315 4.5E-68 T 14-09-2016 PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 Gene3D G3DSA:1.10.10.10 4 84 2.0E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS00985 fb5f664a3c5f4fced0b2bfbc750c0210 315 Gene3D G3DSA:3.40.190.10 98 180 1.2E-21 T 14-09-2016 PAJ_RS08365 b19f11b00113b8dfdb650ca451d763fd 251 PANTHER PTHR24220:SF466 6 249 5.8E-152 T 14-09-2016 PAJ_RS08365 b19f11b00113b8dfdb650ca451d763fd 251 Gene3D G3DSA:3.40.50.300 3 213 2.6E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS08365 b19f11b00113b8dfdb650ca451d763fd 251 PANTHER PTHR24220 6 249 5.8E-152 T 14-09-2016 PAJ_RS08365 b19f11b00113b8dfdb650ca451d763fd 251 SMART SM00382 29 199 1.1E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain PAJ_RS08365 b19f11b00113b8dfdb650ca451d763fd 251 Pfam PF00005 ABC transporter 20 149 5.0E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PAJ_RS08365 b19f11b00113b8dfdb650ca451d763fd 251 SUPERFAMILY SSF52540 4 229 9.46E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS14490 0bf7ed1b0092b3ec98c7373e5eb87a48 104 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 88 8.2E-28 T 14-09-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 PAJ_RS14490 0bf7ed1b0092b3ec98c7373e5eb87a48 104 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 92 4.1E-17 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS14490 0bf7ed1b0092b3ec98c7373e5eb87a48 104 Gene3D G3DSA:3.40.50.2300 1 99 3.5E-36 T 14-09-2016 PAJ_RS14490 0bf7ed1b0092b3ec98c7373e5eb87a48 104 PANTHER PTHR30505 1 99 2.4E-34 T 14-09-2016 PAJ_RS14490 0bf7ed1b0092b3ec98c7373e5eb87a48 104 SUPERFAMILY SSF52794 2 100 4.36E-32 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS07045 638509009810d884f382c4831814643a 626 Pfam PF01435 Peptidase family M48 272 450 2.9E-10 T 14-09-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 PAJ_RS07045 638509009810d884f382c4831814643a 626 Gene3D G3DSA:3.30.2010.10 218 308 1.2E-10 T 14-09-2016 PAJ_RS08155 c1218f24c79b7677087f2d68d0a1e33e 293 Gene3D G3DSA:3.30.2010.10 69 156 1.8E-31 T 14-09-2016 PAJ_RS08155 c1218f24c79b7677087f2d68d0a1e33e 293 Pfam PF01435 Peptidase family M48 74 288 5.3E-40 T 14-09-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 PAJ_RS08155 c1218f24c79b7677087f2d68d0a1e33e 293 PANTHER PTHR10120 1 290 1.7E-111 T 14-09-2016 PAJ_RS08155 c1218f24c79b7677087f2d68d0a1e33e 293 PANTHER PTHR10120:SF19 1 290 1.7E-111 T 14-09-2016 PAJ_RS08155 c1218f24c79b7677087f2d68d0a1e33e 293 Hamap MF_00188 Protease HtpX [htpX]. 1 289 26.238 T 14-09-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 PAJ_RS12145 bebe2cf308e3a38d8834888ff0e1a77f 341 Pfam PF08808 RES domain 176 318 1.4E-20 T 14-09-2016 IPR014914 RES domain PAJ_RS12145 bebe2cf308e3a38d8834888ff0e1a77f 341 SMART SM00953 172 326 7.1E-8 T 14-09-2016 IPR014914 RES domain PAJ_RS06855 a2c58ce303f8e86b7d10b58a1f038cb5 433 Hamap MF_01301 Maltoporin [lamB]. 3 433 42.688 T 14-09-2016 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 PAJ_RS06855 a2c58ce303f8e86b7d10b58a1f038cb5 433 Pfam PF02264 LamB porin 27 433 6.7E-144 T 14-09-2016 IPR003192 Porin, LamB type GO:0006810|GO:0016020 PAJ_RS06855 a2c58ce303f8e86b7d10b58a1f038cb5 433 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 31 429 0.0 T 14-09-2016 IPR003192 Porin, LamB type GO:0006810|GO:0016020 PAJ_RS06855 a2c58ce303f8e86b7d10b58a1f038cb5 433 PANTHER PTHR38762 1 433 1.1E-189 T 14-09-2016 PAJ_RS06855 a2c58ce303f8e86b7d10b58a1f038cb5 433 SUPERFAMILY SSF56935 25 433 8.55E-145 T 14-09-2016 PAJ_RS06855 a2c58ce303f8e86b7d10b58a1f038cb5 433 Gene3D G3DSA:2.40.170.10 25 433 2.1E-164 T 14-09-2016 IPR003192 Porin, LamB type GO:0006810|GO:0016020 PAJ_RS05200 1576e6238841a46814a86e276333b7af 316 SUPERFAMILY SSF49401 192 315 7.46E-17 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS05200 1576e6238841a46814a86e276333b7af 316 Gene3D G3DSA:2.60.40.1090 192 315 1.8E-19 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS00990 e0a0f804e1416b7531b838e40cf8bce5 127 SUPERFAMILY SSF54427 3 126 9.93E-41 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS00990 e0a0f804e1416b7531b838e40cf8bce5 127 Pfam PF11533 Protein of unknown function (DUF3225) 5 126 1.3E-58 T 14-09-2016 IPR024507 Protein of unknown function DUF3225 PAJ_RS00990 e0a0f804e1416b7531b838e40cf8bce5 127 Gene3D G3DSA:3.10.450.50 5 127 4.0E-59 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS10835 e3b6633b76d22d76dc0cf3aa55ecc740 330 SUPERFAMILY SSF53850 112 233 1.99E-6 T 14-09-2016 PAJ_RS10835 e3b6633b76d22d76dc0cf3aa55ecc740 330 PIRSF PIRSF017082 1 330 7.1E-79 T 14-09-2016 IPR005064 Bordetella uptake gene GO:0030288 PAJ_RS10835 e3b6633b76d22d76dc0cf3aa55ecc740 330 PANTHER PTHR30349:SF29 12 321 5.2E-175 T 14-09-2016 PAJ_RS10835 e3b6633b76d22d76dc0cf3aa55ecc740 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 61 318 4.1E-21 T 14-09-2016 IPR005064 Bordetella uptake gene GO:0030288 PAJ_RS10835 e3b6633b76d22d76dc0cf3aa55ecc740 330 PANTHER PTHR30349 12 321 5.2E-175 T 14-09-2016 PAJ_RS19695 e47084da60261bb7f6fb41a2f260fd2c 213 PANTHER PTHR11260:SF44 9 208 1.9E-125 T 14-09-2016 PAJ_RS19695 e47084da60261bb7f6fb41a2f260fd2c 213 PANTHER PTHR11260 9 208 1.9E-125 T 14-09-2016 PAJ_RS19695 e47084da60261bb7f6fb41a2f260fd2c 213 Gene3D G3DSA:3.40.30.10 7 101 2.3E-30 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19695 e47084da60261bb7f6fb41a2f260fd2c 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 194 4.0E-11 T 14-09-2016 IPR004046 Glutathione S-transferase, C-terminal PAJ_RS19695 e47084da60261bb7f6fb41a2f260fd2c 213 SUPERFAMILY SSF47616 82 208 3.84E-28 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS19695 e47084da60261bb7f6fb41a2f260fd2c 213 SUPERFAMILY SSF52833 11 110 2.9E-23 T 14-09-2016 IPR012336 Thioredoxin-like fold PAJ_RS19695 e47084da60261bb7f6fb41a2f260fd2c 213 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 81 7.3E-18 T 14-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PAJ_RS19695 e47084da60261bb7f6fb41a2f260fd2c 213 Gene3D G3DSA:1.20.1050.10 102 208 3.0E-18 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like PAJ_RS08070 44542e3b92f3f95c3e6aba9a66270e5a 61 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 58 19.887 T 14-09-2016 IPR005371 Uncharacterised protein family UPF0181 PAJ_RS08070 44542e3b92f3f95c3e6aba9a66270e5a 61 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 48 4.0E-14 T 14-09-2016 IPR005371 Uncharacterised protein family UPF0181 PAJ_RS08070 44542e3b92f3f95c3e6aba9a66270e5a 61 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 48 2.2E-27 T 14-09-2016 IPR005371 Uncharacterised protein family UPF0181 PAJ_RS02685 2da05abc01f32e5896a75b07f8c950f5 338 Pfam PF06166 Protein of unknown function (DUF979) 6 337 1.6E-125 T 14-09-2016 IPR009323 Protein of unknown function DUF979 PAJ_RS07720 006fb6eb165b2fef8de1c3175029805e 267 SUPERFAMILY SSF51366 1 266 1.04E-89 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PAJ_RS07720 006fb6eb165b2fef8de1c3175029805e 267 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 14-09-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PAJ_RS07720 006fb6eb165b2fef8de1c3175029805e 267 Gene3D G3DSA:3.20.20.70 1 266 6.1E-98 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS07720 006fb6eb165b2fef8de1c3175029805e 267 PANTHER PTHR10314 10 51 3.0E-28 T 14-09-2016 PAJ_RS07720 006fb6eb165b2fef8de1c3175029805e 267 PANTHER PTHR10314 74 153 3.0E-28 T 14-09-2016 PAJ_RS07720 006fb6eb165b2fef8de1c3175029805e 267 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 1.0E-102 T 14-09-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PAJ_RS07720 006fb6eb165b2fef8de1c3175029805e 267 Pfam PF00290 Tryptophan synthase alpha chain 8 266 4.9E-96 T 14-09-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PAJ_RS07720 006fb6eb165b2fef8de1c3175029805e 267 PANTHER PTHR10314:SF4 10 51 3.0E-28 T 14-09-2016 PAJ_RS07720 006fb6eb165b2fef8de1c3175029805e 267 PANTHER PTHR10314:SF4 74 153 3.0E-28 T 14-09-2016 PAJ_RS07720 006fb6eb165b2fef8de1c3175029805e 267 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 38.02 T 14-09-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PAJ_RS12810 e466a2b05234c74520477914a443df80 245 SUPERFAMILY SSF142823 10 230 7.72E-41 T 14-09-2016 IPR005238 ComB-like GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 PAJ_RS12810 e466a2b05234c74520477914a443df80 245 Gene3D G3DSA:3.90.1560.10 15 237 2.8E-51 T 14-09-2016 IPR005238 ComB-like GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 PAJ_RS12810 e466a2b05234c74520477914a443df80 245 Pfam PF04029 2-phosphosulpholactate phosphatase 28 227 5.8E-19 T 14-09-2016 IPR005238 ComB-like GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 PAJ_RS06570 290a6267d071eb48e0af9bd1f8c84540 92 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 24 86 6.8E-14 T 14-09-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 PAJ_RS06570 290a6267d071eb48e0af9bd1f8c84540 92 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 8 87 3.2E-33 T 14-09-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 PAJ_RS06570 290a6267d071eb48e0af9bd1f8c84540 92 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 1 88 25.342 T 14-09-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 PAJ_RS12575 6e33dab27d4f1b84dbaf77b96e08ab1a 226 Pfam PF03942 DTW domain 30 213 4.9E-43 T 14-09-2016 IPR005636 DTW PAJ_RS12575 6e33dab27d4f1b84dbaf77b96e08ab1a 226 SMART SM01144 27 219 9.7E-75 T 14-09-2016 IPR005636 DTW PAJ_RS12575 6e33dab27d4f1b84dbaf77b96e08ab1a 226 PANTHER PTHR21392 1 224 1.2E-120 T 14-09-2016 PAJ_RS12575 6e33dab27d4f1b84dbaf77b96e08ab1a 226 PANTHER PTHR21392:SF1 1 224 1.2E-120 T 14-09-2016 PAJ_RS04110 2c294f237fc6f8b10e736678b9434def 182 SUPERFAMILY SSF47413 31 101 2.25E-10 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS04110 2c294f237fc6f8b10e736678b9434def 182 Gene3D G3DSA:1.10.260.40 46 101 9.5E-10 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PAJ_RS04110 2c294f237fc6f8b10e736678b9434def 182 Pfam PF01381 Helix-turn-helix 47 92 6.7E-6 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS04110 2c294f237fc6f8b10e736678b9434def 182 SMART SM00530 40 95 0.0016 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PAJ_RS05395 11d50042a5d03f663ec886aa977c69b1 307 PANTHER PTHR12110 24 305 2.5E-29 T 14-09-2016 PAJ_RS05395 11d50042a5d03f663ec886aa977c69b1 307 Gene3D G3DSA:3.20.20.150 1 305 1.1E-72 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS05395 11d50042a5d03f663ec886aa977c69b1 307 Pfam PF01261 Xylose isomerase-like TIM barrel 29 259 7.3E-32 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS05395 11d50042a5d03f663ec886aa977c69b1 307 SUPERFAMILY SSF51658 3 305 4.56E-49 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PAJ_RS20740 2dcf4f14f042b7777895c62b10801f03 222 Pfam PF10144 Bacterial virulence factor haemolysin 1 160 3.4E-67 T 14-09-2016 IPR019305 Uncharacterised protein family Smp PAJ_RS10890 1d655fc0d4a2846c81e30183ddebf227 272 SUPERFAMILY SSF55166 20 270 1.57E-96 T 14-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain PAJ_RS10890 1d655fc0d4a2846c81e30183ddebf227 272 Pfam PF03411 Penicillin-insensitive murein endopeptidase 35 268 2.2E-96 T 14-09-2016 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 PAJ_RS10890 1d655fc0d4a2846c81e30183ddebf227 272 PIRSF PIRSF018455 1 272 3.6E-115 T 14-09-2016 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 PAJ_RS10890 1d655fc0d4a2846c81e30183ddebf227 272 Gene3D G3DSA:3.30.1380.10 20 270 1.7E-103 T 14-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain PAJ_RS10875 09b9fea3094763b40672232865ffc970 93 Pfam PF08891 YfcL protein 4 86 1.5E-34 T 14-09-2016 IPR014987 Uncharacterised protein family YfcL PAJ_RS20460 d4d52e2d74f09a873d40128126f650aa 178 Pfam PF11659 Protein of unknown function (DUF3261) 1 150 6.3E-40 T 14-09-2016 IPR021675 Protein of unknown function DUF3261 PAJ_RS14515 fea12b054cf04bc67525d8ed01d88276 193 Pfam PF02525 Flavodoxin-like fold 3 187 9.9E-32 T 14-09-2016 IPR003680 Flavodoxin-like fold PAJ_RS14515 fea12b054cf04bc67525d8ed01d88276 193 PANTHER PTHR10204:SF36 1 193 2.0E-125 T 14-09-2016 PAJ_RS14515 fea12b054cf04bc67525d8ed01d88276 193 Gene3D G3DSA:3.40.50.360 1 192 1.6E-42 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS14515 fea12b054cf04bc67525d8ed01d88276 193 SUPERFAMILY SSF52218 1 192 1.91E-39 T 14-09-2016 IPR029039 Flavoprotein-like domain PAJ_RS14515 fea12b054cf04bc67525d8ed01d88276 193 PANTHER PTHR10204 1 193 2.0E-125 T 14-09-2016 PAJ_RS15015 dccc6ad7b69abdc00070656b76a0ae16 101 PANTHER PTHR35893:SF2 1 101 5.6E-51 T 14-09-2016 PAJ_RS15015 dccc6ad7b69abdc00070656b76a0ae16 101 PANTHER PTHR35893 1 101 5.6E-51 T 14-09-2016 PAJ_RS15015 dccc6ad7b69abdc00070656b76a0ae16 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 10 101 2.1E-27 T 14-09-2016 IPR010279 Protein of unknown function DUF883, ElaB PAJ_RS09710 bc96ad0b6cf930f910dfc676e7a8e98e 352 PANTHER PTHR30509 1 351 1.1E-155 T 14-09-2016 PAJ_RS09710 bc96ad0b6cf930f910dfc676e7a8e98e 352 PANTHER PTHR30509:SF5 1 351 1.1E-155 T 14-09-2016 PAJ_RS09710 bc96ad0b6cf930f910dfc676e7a8e98e 352 Pfam PF13515 Fusaric acid resistance protein-like 34 159 4.6E-14 T 14-09-2016 PAJ_RS05230 21dc47e53f81c44ae07f03a200e2a902 185 PANTHER PTHR33420 14 185 9.5E-41 T 14-09-2016 PAJ_RS05230 21dc47e53f81c44ae07f03a200e2a902 185 Gene3D G3DSA:2.60.40.1090 33 185 1.3E-38 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS05230 21dc47e53f81c44ae07f03a200e2a902 185 Pfam PF00419 Fimbrial protein 35 185 6.6E-21 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS05230 21dc47e53f81c44ae07f03a200e2a902 185 SUPERFAMILY SSF49401 35 185 5.97E-34 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS03455 c0204966940db845dda64bb23dbe3d86 281 PANTHER PTHR30222:SF1 20 279 8.1E-82 T 14-09-2016 PAJ_RS03455 c0204966940db845dda64bb23dbe3d86 281 PANTHER PTHR30222 20 279 8.1E-82 T 14-09-2016 PAJ_RS03455 c0204966940db845dda64bb23dbe3d86 281 Gene3D G3DSA:1.10.3720.10 11 270 3.0E-59 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03455 c0204966940db845dda64bb23dbe3d86 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 260 1.7E-13 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03455 c0204966940db845dda64bb23dbe3d86 281 SUPERFAMILY SSF161098 8 265 1.87E-53 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS04190 bd4678d09678b2148ccb4bde9ec3fb6c 113 Pfam PF05939 Phage minor tail protein 4 111 1.5E-31 T 14-09-2016 IPR010265 Bacteriophage lambda, GpM, minor tail PAJ_RS01265 4475ce2d9a2652b045ed25f90ea82a94 554 PIRSF PIRSF029745 5 554 3.6E-143 T 14-09-2016 IPR027282 Two partner secretion pathway transporter GO:0015031 PAJ_RS01265 4475ce2d9a2652b045ed25f90ea82a94 554 PANTHER PTHR34597:SF2 8 554 3.4E-122 T 14-09-2016 PAJ_RS01265 4475ce2d9a2652b045ed25f90ea82a94 554 Pfam PF08479 POTRA domain, ShlB-type 72 147 4.5E-23 T 14-09-2016 IPR013686 Polypeptide-transport-associated, ShlB-type PAJ_RS01265 4475ce2d9a2652b045ed25f90ea82a94 554 Gene3D G3DSA:2.40.160.50 176 553 3.2E-106 T 14-09-2016 PAJ_RS01265 4475ce2d9a2652b045ed25f90ea82a94 554 Gene3D G3DSA:3.10.20.310 68 147 9.4E-28 T 14-09-2016 PAJ_RS01265 4475ce2d9a2652b045ed25f90ea82a94 554 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 164 497 7.6E-35 T 14-09-2016 IPR005565 Haemolysin activator HlyB PAJ_RS01265 4475ce2d9a2652b045ed25f90ea82a94 554 PANTHER PTHR34597 8 554 3.4E-122 T 14-09-2016 PAJ_RS06990 c4f18dae071eb88b04d1d2ebc75debf7 136 Gene3D G3DSA:3.10.180.10 3 119 1.2E-18 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS06990 c4f18dae071eb88b04d1d2ebc75debf7 136 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 114 7.4E-7 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PAJ_RS06990 c4f18dae071eb88b04d1d2ebc75debf7 136 SUPERFAMILY SSF54593 2 118 1.29E-19 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS20210 d0d040fbba8f6e268a867a3411bae926 163 Pfam PF10696 Protein of unknown function (DUF2501) 85 161 1.3E-25 T 14-09-2016 IPR019637 Protein of unknown function DUF2501 PAJ_RS05755 e405a69204b807a22f1e2213de22780a 253 Pfam PF04338 Protein of unknown function, DUF481 47 252 1.1E-55 T 14-09-2016 IPR007433 Protein of unknown function DUF481 PAJ_RS06425 29a8b025bb932c78d29eea41f937e996 328 PANTHER PTHR32196 22 327 2.1E-228 T 14-09-2016 PAJ_RS06425 29a8b025bb932c78d29eea41f937e996 328 PANTHER PTHR32196:SF37 22 327 2.1E-228 T 14-09-2016 PAJ_RS06425 29a8b025bb932c78d29eea41f937e996 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 317 1.2E-42 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS14750 2abc3a35725952e727e82711d5c5c5be 155 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 130 6.5E-41 T 14-09-2016 IPR009678 Bacteriophage tail completion protein R PAJ_RS06965 7dbe9acd58e768a7ac0bef473631bccf 1660 Gene3D G3DSA:2.160.20.20 333 631 7.5E-4 T 14-09-2016 IPR012332 P22 tailspike C-terminal domain-like PAJ_RS06965 7dbe9acd58e768a7ac0bef473631bccf 1660 Gene3D G3DSA:3.20.20.80 1149 1346 6.3E-7 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PAJ_RS06965 7dbe9acd58e768a7ac0bef473631bccf 1660 SUPERFAMILY SSF51445 1111 1345 1.06E-19 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily PAJ_RS03805 3f1fe6984a2a3507d910ad37f8461c55 547 PANTHER PTHR30462:SF2 1 547 0.0 T 14-09-2016 PAJ_RS03805 3f1fe6984a2a3507d910ad37f8461c55 547 Pfam PF02470 MlaD protein 43 134 4.6E-8 T 14-09-2016 IPR003399 Mce/MlaD PAJ_RS03805 3f1fe6984a2a3507d910ad37f8461c55 547 Pfam PF02470 MlaD protein 158 218 2.7E-7 T 14-09-2016 IPR003399 Mce/MlaD PAJ_RS03805 3f1fe6984a2a3507d910ad37f8461c55 547 Pfam PF02470 MlaD protein 287 390 4.6E-12 T 14-09-2016 IPR003399 Mce/MlaD PAJ_RS03805 3f1fe6984a2a3507d910ad37f8461c55 547 PANTHER PTHR30462 1 547 0.0 T 14-09-2016 PAJ_RS05015 5e6123d45b91997eed4fea8033ba967f 104 SUPERFAMILY SSF46785 5 98 4.53E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05015 5e6123d45b91997eed4fea8033ba967f 104 SMART SM00418 5 99 0.0065 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PAJ_RS05015 5e6123d45b91997eed4fea8033ba967f 104 Gene3D G3DSA:1.10.10.10 5 99 1.7E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS05015 5e6123d45b91997eed4fea8033ba967f 104 Pfam PF12840 Helix-turn-helix domain 6 78 5.6E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS12400 447e19b68034f2ab83e5597d0e1886c6 314 Gene3D G3DSA:3.30.470.20 240 291 5.4E-4 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PAJ_RS12400 447e19b68034f2ab83e5597d0e1886c6 314 SUPERFAMILY SSF56059 159 295 2.41E-5 T 14-09-2016 PAJ_RS12400 447e19b68034f2ab83e5597d0e1886c6 314 Pfam PF14305 TupA-like ATPgrasp 51 295 9.3E-46 T 14-09-2016 IPR029465 TupA-like ATPgrasp protein PAJ_RS19335 47ca1a881dd2601f039f953715d20369 263 Pfam PF01925 Sulfite exporter TauE/SafE 17 258 3.7E-47 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PAJ_RS19335 47ca1a881dd2601f039f953715d20369 263 PANTHER PTHR30269:SF9 10 263 1.5E-40 T 14-09-2016 PAJ_RS19335 47ca1a881dd2601f039f953715d20369 263 PANTHER PTHR30269 10 263 1.5E-40 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PAJ_RS07405 32b878d80389b2d7eee34d3bf58ad9f0 62 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 15 62 1.0E-16 T 14-09-2016 PAJ_RS07405 32b878d80389b2d7eee34d3bf58ad9f0 62 Pfam PF13617 YnbE-like lipoprotein 6 60 9.5E-29 T 14-09-2016 IPR025985 YnbE-like lipoprotein PAJ_RS20380 4db68683e9ebf90992789d9336d9a0e9 306 PIRSF PIRSF001365 1 283 7.0E-50 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS20380 4db68683e9ebf90992789d9336d9a0e9 306 SUPERFAMILY SSF51569 1 274 8.79E-49 T 14-09-2016 PAJ_RS20380 4db68683e9ebf90992789d9336d9a0e9 306 Gene3D G3DSA:3.20.20.70 1 274 9.0E-52 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS20380 4db68683e9ebf90992789d9336d9a0e9 306 PANTHER PTHR12128 3 274 1.8E-37 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS20380 4db68683e9ebf90992789d9336d9a0e9 306 PANTHER PTHR12128:SF15 3 274 1.8E-37 T 14-09-2016 PAJ_RS20380 4db68683e9ebf90992789d9336d9a0e9 306 SMART SM01130 3 295 4.2E-31 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS20380 4db68683e9ebf90992789d9336d9a0e9 306 Pfam PF00701 Dihydrodipicolinate synthetase family 4 274 2.7E-27 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PAJ_RS04780 cfdd1bf8fa52f4dbd0bc88740c272a32 187 SUPERFAMILY SSF46689 3 70 1.18E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 PAJ_RS04780 cfdd1bf8fa52f4dbd0bc88740c272a32 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 3.2E-14 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS04780 cfdd1bf8fa52f4dbd0bc88740c272a32 187 PANTHER PTHR30055:SF27 3 72 2.2E-15 T 14-09-2016 PAJ_RS04780 cfdd1bf8fa52f4dbd0bc88740c272a32 187 PANTHER PTHR30055 3 72 2.2E-15 T 14-09-2016 PAJ_RS04780 cfdd1bf8fa52f4dbd0bc88740c272a32 187 Gene3D G3DSA:1.10.357.10 3 166 1.4E-22 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PAJ_RS04780 cfdd1bf8fa52f4dbd0bc88740c272a32 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 7.8E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS04780 cfdd1bf8fa52f4dbd0bc88740c272a32 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 7.8E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PAJ_RS19270 4cabec8f3737515e6469a72683678c16 96 SUPERFAMILY SSF54909 2 95 3.09E-24 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel PAJ_RS19270 4cabec8f3737515e6469a72683678c16 96 Gene3D G3DSA:3.30.70.900 2 96 1.4E-26 T 14-09-2016 PAJ_RS19270 4cabec8f3737515e6469a72683678c16 96 Pfam PF07045 Domain of unknown function (DUF1330) 2 95 2.5E-25 T 14-09-2016 IPR010753 Domain of unknown function DUF1330 PAJ_RS09105 fd8301afd44bc164b6d6f32f5e2a8181 153 SUPERFAMILY SSF55804 2 143 1.7E-33 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PAJ_RS09105 fd8301afd44bc164b6d6f32f5e2a8181 153 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 3 130 5.0E-36 T 14-09-2016 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS09105 fd8301afd44bc164b6d6f32f5e2a8181 153 PANTHER PTHR30505 1 153 3.8E-30 T 14-09-2016 PAJ_RS09105 fd8301afd44bc164b6d6f32f5e2a8181 153 Gene3D G3DSA:3.40.930.10 2 145 1.9E-37 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS09105 fd8301afd44bc164b6d6f32f5e2a8181 153 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 2 143 3.8E-33 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PAJ_RS16260 a8b0a793024a026c8bb2cd8eb9d23c8a 446 PANTHER PTHR30354:SF8 1 446 6.6E-288 T 14-09-2016 PAJ_RS16260 a8b0a793024a026c8bb2cd8eb9d23c8a 446 Pfam PF02447 GntP family permease 6 441 1.2E-159 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PAJ_RS16260 a8b0a793024a026c8bb2cd8eb9d23c8a 446 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 5 444 1.0E-165 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PAJ_RS16260 a8b0a793024a026c8bb2cd8eb9d23c8a 446 PIRSF PIRSF002746 1 446 1.7E-154 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PAJ_RS16260 a8b0a793024a026c8bb2cd8eb9d23c8a 446 PANTHER PTHR30354 1 446 6.6E-288 T 14-09-2016 PAJ_RS02200 6146451d0bafeb34214bb24798f7b88d 232 Gene3D G3DSA:3.90.1140.10 10 231 2.7E-77 T 14-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase PAJ_RS02200 6146451d0bafeb34214bb24798f7b88d 232 Pfam PF08975 Domain of unknown function (DUF1868) 18 129 6.5E-34 T 14-09-2016 IPR015069 Domain of unknown function DUF1868 PAJ_RS02200 6146451d0bafeb34214bb24798f7b88d 232 SUPERFAMILY SSF55144 14 230 5.23E-40 T 14-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase PAJ_RS10730 486c38882894e5337debcf7b2de83eba 426 SUPERFAMILY SSF103473 11 405 2.62E-42 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS10730 486c38882894e5337debcf7b2de83eba 426 Pfam PF07690 Major Facilitator Superfamily 19 342 9.9E-21 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS10730 486c38882894e5337debcf7b2de83eba 426 Gene3D G3DSA:1.20.1250.20 224 408 1.1E-19 T 14-09-2016 PAJ_RS10730 486c38882894e5337debcf7b2de83eba 426 Gene3D G3DSA:1.20.1250.20 12 197 5.8E-14 T 14-09-2016 PAJ_RS11110 2fe5c7c55c213b86d676799cc05f0917 177 Pfam PF08808 RES domain 13 154 9.5E-10 T 14-09-2016 IPR014914 RES domain PAJ_RS11110 2fe5c7c55c213b86d676799cc05f0917 177 SMART SM00953 24 158 7.8E-4 T 14-09-2016 IPR014914 RES domain PAJ_RS08975 83289eb6ed675a69eff8720d9e049a07 60 Pfam PF09926 Uncharacterized small protein (DUF2158) 7 48 5.5E-6 T 14-09-2016 IPR019226 Protein of unknown function DUF2158 PAJ_RS20515 f7d9847e0ca0a53e2ee1d03fcede9507 269 Pfam PF01791 DeoC/LacD family aldolase 40 236 7.8E-25 T 14-09-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 PAJ_RS20515 f7d9847e0ca0a53e2ee1d03fcede9507 269 SMART SM01133 20 236 7.8E-26 T 14-09-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 PAJ_RS20515 f7d9847e0ca0a53e2ee1d03fcede9507 269 Gene3D G3DSA:3.20.20.70 3 260 8.1E-65 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS20515 f7d9847e0ca0a53e2ee1d03fcede9507 269 PIRSF PIRSF038992 1 266 5.4E-75 T 14-09-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 PAJ_RS20515 f7d9847e0ca0a53e2ee1d03fcede9507 269 SUPERFAMILY SSF51569 4 250 1.79E-54 T 14-09-2016 PAJ_RS06385 f66fed48eefe2ab4d8d37792b72e2a16 232 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 63 77 - T 14-09-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS06385 f66fed48eefe2ab4d8d37792b72e2a16 232 SUPERFAMILY SSF55120 17 232 9.92E-59 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS06385 f66fed48eefe2ab4d8d37792b72e2a16 232 PANTHER PTHR11079 9 231 2.6E-60 T 14-09-2016 PAJ_RS06385 f66fed48eefe2ab4d8d37792b72e2a16 232 Pfam PF00849 RNA pseudouridylate synthase 26 180 1.3E-25 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PAJ_RS06385 f66fed48eefe2ab4d8d37792b72e2a16 232 PANTHER PTHR11079:SF73 9 231 2.6E-60 T 14-09-2016 PAJ_RS15140 848bd840c13d772f04b077d3b5c0498e 98 TIGRFAM TIGR03578 EF_0831: conserved hypothetical protein EF_0831/AHA_3912 2 96 1.1E-37 T 14-09-2016 IPR020037 Protein of unknown function DUF4312 PAJ_RS15140 848bd840c13d772f04b077d3b5c0498e 98 Pfam PF14189 Domain of unknown function (DUF4312) 5 87 1.0E-36 T 14-09-2016 IPR020037 Protein of unknown function DUF4312 PAJ_RS11470 183da9afc74476dda1c904fc33c57d14 350 PANTHER PTHR32196 10 340 3.0E-123 T 14-09-2016 PAJ_RS11470 183da9afc74476dda1c904fc33c57d14 350 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 316 2.8E-26 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS11470 183da9afc74476dda1c904fc33c57d14 350 PANTHER PTHR32196:SF39 10 340 3.0E-123 T 14-09-2016 PAJ_RS11205 d1e85faadc20847348412814483360f2 225 Pfam PF01596 O-methyltransferase 39 209 7.6E-39 T 14-09-2016 IPR002935 O-methyltransferase, family 3 GO:0008171 PAJ_RS11205 d1e85faadc20847348412814483360f2 225 Gene3D G3DSA:3.40.50.150 11 225 8.5E-65 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS11205 d1e85faadc20847348412814483360f2 225 SUPERFAMILY SSF53335 30 225 9.14E-42 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS11205 d1e85faadc20847348412814483360f2 225 PANTHER PTHR10509 49 219 4.8E-59 T 14-09-2016 PAJ_RS15010 dea0ff663cda39353566a635dc88b2c8 124 Pfam PF06476 Protein of unknown function (DUF1090) 11 118 3.4E-34 T 14-09-2016 IPR009468 Protein of unknown function DUF1090 PAJ_RS11905 31e0ff1da7691b2c5490fc50d68f47ac 254 Pfam PF14581 SseB protein C-terminal domain 132 238 3.2E-30 T 14-09-2016 IPR027945 SseB protein, C-terminal PAJ_RS11905 31e0ff1da7691b2c5490fc50d68f47ac 254 Pfam PF07179 SseB protein N-terminal domain 4 114 1.8E-24 T 14-09-2016 IPR009839 SseB protein N-terminal domain PAJ_RS20560 0ba7b6016c6669d3b13cf54c6ab76091 359 PANTHER PTHR33886 1 355 2.9E-92 T 14-09-2016 PAJ_RS20560 0ba7b6016c6669d3b13cf54c6ab76091 359 PANTHER PTHR33886:SF2 1 355 2.9E-92 T 14-09-2016 PAJ_RS20560 0ba7b6016c6669d3b13cf54c6ab76091 359 SUPERFAMILY SSF48208 23 358 2.04E-70 T 14-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 PAJ_RS20560 0ba7b6016c6669d3b13cf54c6ab76091 359 Gene3D G3DSA:1.50.10.10 39 355 2.9E-87 T 14-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 PAJ_RS20560 0ba7b6016c6669d3b13cf54c6ab76091 359 Pfam PF07470 Glycosyl Hydrolase Family 88 36 356 6.6E-84 T 14-09-2016 IPR010905 Glycosyl hydrolase, family 88 PAJ_RS05335 86d641b418653261339588716d791efc 327 Pfam PF08908 Domain of unknown function (DUF1852) 1 323 1.2E-183 T 14-09-2016 IPR015004 Protein of unknown function DUF1852 PAJ_RS05335 86d641b418653261339588716d791efc 327 PIRSF PIRSF034367 1 327 2.7E-194 T 14-09-2016 IPR015004 Protein of unknown function DUF1852 PAJ_RS20785 63aedb2c135ac051c912aa871fc8c74f 427 SUPERFAMILY SSF49401 252 425 2.54E-10 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS20785 63aedb2c135ac051c912aa871fc8c74f 427 Gene3D G3DSA:2.60.40.1090 252 424 2.7E-8 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS20785 63aedb2c135ac051c912aa871fc8c74f 427 Pfam PF00419 Fimbrial protein 250 427 6.1E-22 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS20785 63aedb2c135ac051c912aa871fc8c74f 427 PIRSF PIRSF029766 3 427 4.3E-113 T 14-09-2016 IPR011228 Uncharacterised conserved protein UCP029766 PAJ_RS03080 2aee76a9f472d843320e7331640a4212 193 PANTHER PTHR30353:SF8 1 191 1.0E-70 T 14-09-2016 PAJ_RS03080 2aee76a9f472d843320e7331640a4212 193 PANTHER PTHR30353 1 191 1.0E-70 T 14-09-2016 IPR032818 DedA family PAJ_RS03080 2aee76a9f472d843320e7331640a4212 193 Pfam PF09335 SNARE associated Golgi protein 25 145 1.1E-17 T 14-09-2016 IPR032816 SNARE associated Golgi protein PAJ_RS12970 05011e47cb0fff05dc262b90f663d555 371 Gene3D G3DSA:3.60.10.10 120 370 2.4E-11 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS12970 05011e47cb0fff05dc262b90f663d555 371 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 120 362 1.7E-13 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS12970 05011e47cb0fff05dc262b90f663d555 371 SUPERFAMILY SSF56219 110 371 2.88E-25 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase PAJ_RS08190 92a4ab9ccea85a7baaf9a7966ccab89c 72 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 1.6E-30 T 14-09-2016 IPR010696 Protein of unknown function DUF1272 PAJ_RS08190 92a4ab9ccea85a7baaf9a7966ccab89c 72 Gene3D G3DSA:3.30.40.10 8 61 4.4E-4 T 14-09-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type PAJ_RS19140 023c8df0640a9e681325608249e272c4 241 Pfam PF13618 Gluconate 2-dehydrogenase subunit 3 59 214 2.4E-40 T 14-09-2016 IPR027056 Gluconate 2-dehydrogenase subunit 3 KEGG: 00030+1.1.99.3|MetaCyc: PWY-7165 PAJ_RS15490 668aaa8cc1dd1d25b18106961383ec99 91 SUPERFAMILY SSF52038 1 88 6.15E-20 T 14-09-2016 IPR000468 Barstar (barnase inhibitor) PAJ_RS15490 668aaa8cc1dd1d25b18106961383ec99 91 Gene3D G3DSA:3.30.370.10 4 84 1.3E-10 T 14-09-2016 IPR000468 Barstar (barnase inhibitor) PAJ_RS15680 995abacfc2b3807ab53446fba3f70309 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 9.3E-59 T 14-09-2016 IPR007456 Smg PAJ_RS15680 995abacfc2b3807ab53446fba3f70309 157 PANTHER PTHR38692:SF1 1 157 8.4E-83 T 14-09-2016 PAJ_RS15680 995abacfc2b3807ab53446fba3f70309 157 PANTHER PTHR38692 1 157 8.4E-83 T 14-09-2016 PAJ_RS15680 995abacfc2b3807ab53446fba3f70309 157 Hamap MF_00598 Protein Smg [smg]. 1 157 33.001 T 14-09-2016 IPR007456 Smg PAJ_RS06500 51e5fcdf0af2c9308f67323bced04467 87 Pfam PF01337 Barstar (barnase inhibitor) 6 79 5.9E-13 T 14-09-2016 IPR000468 Barstar (barnase inhibitor) PAJ_RS06500 51e5fcdf0af2c9308f67323bced04467 87 Gene3D G3DSA:3.30.370.10 3 82 6.4E-18 T 14-09-2016 IPR000468 Barstar (barnase inhibitor) PAJ_RS06500 51e5fcdf0af2c9308f67323bced04467 87 SUPERFAMILY SSF52038 1 84 3.79E-17 T 14-09-2016 IPR000468 Barstar (barnase inhibitor) PAJ_RS21815 3a79732151f856de947808ec4923a4dc 95 SUPERFAMILY SSF55021 31 95 1.6E-14 T 14-09-2016 PAJ_RS21815 3a79732151f856de947808ec4923a4dc 95 Pfam PF09383 NIL domain 51 95 1.2E-10 T 14-09-2016 IPR018449 NIL domain PAJ_RS21815 3a79732151f856de947808ec4923a4dc 95 PANTHER PTHR24220:SF455 1 86 4.3E-24 T 14-09-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 PAJ_RS21815 3a79732151f856de947808ec4923a4dc 95 PANTHER PTHR24220 1 86 4.3E-24 T 14-09-2016 PAJ_RS21815 3a79732151f856de947808ec4923a4dc 95 Gene3D G3DSA:3.30.70.260 14 95 2.5E-20 T 14-09-2016 PAJ_RS06510 5b7202b0c53bdc602d1bb7bb2485eaa1 987 Gene3D G3DSA:3.30.420.40 743 776 3.8E-4 T 14-09-2016 PAJ_RS06510 5b7202b0c53bdc602d1bb7bb2485eaa1 987 Gene3D G3DSA:3.30.420.40 670 694 3.8E-4 T 14-09-2016 PAJ_RS06510 5b7202b0c53bdc602d1bb7bb2485eaa1 987 Gene3D G3DSA:3.30.420.40 557 636 3.8E-4 T 14-09-2016 PAJ_RS06510 5b7202b0c53bdc602d1bb7bb2485eaa1 987 PIRSF PIRSF034585 1 987 0.0 T 14-09-2016 IPR009216 Virulence factor SrfB PAJ_RS06510 5b7202b0c53bdc602d1bb7bb2485eaa1 987 SUPERFAMILY SSF53067 687 819 3.77E-5 T 14-09-2016 PAJ_RS06510 5b7202b0c53bdc602d1bb7bb2485eaa1 987 SUPERFAMILY SSF53067 555 616 3.77E-5 T 14-09-2016 PAJ_RS06510 5b7202b0c53bdc602d1bb7bb2485eaa1 987 Pfam PF07520 Virulence factor SrfB 1 984 0.0 T 14-09-2016 IPR009216 Virulence factor SrfB PAJ_RS22260 81de8b7509730699788a9ebd4f90ade6 456 Pfam PF13332 Haemagluttinin repeat 94 269 2.3E-45 T 14-09-2016 IPR025157 Haemagluttinin repeat PAJ_RS17370 a6937ee13d609085bc350328c0381bd3 307 PANTHER PTHR30606 3 307 2.3E-198 T 14-09-2016 PAJ_RS17370 a6937ee13d609085bc350328c0381bd3 307 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 49.542 T 14-09-2016 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24|UniPathway: UPA00030 PAJ_RS17370 a6937ee13d609085bc350328c0381bd3 307 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 6 297 3.1E-97 T 14-09-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PAJ_RS17370 a6937ee13d609085bc350328c0381bd3 307 PIRSF PIRSF026649 2 306 9.8E-91 T 14-09-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PAJ_RS17370 a6937ee13d609085bc350328c0381bd3 307 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 6 306 9.3E-133 T 14-09-2016 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24|UniPathway: UPA00030 PAJ_RS17370 a6937ee13d609085bc350328c0381bd3 307 PANTHER PTHR30606:SF7 3 307 2.3E-198 T 14-09-2016 PAJ_RS17370 a6937ee13d609085bc350328c0381bd3 307 Hamap MF_01943 Lipid A biosynthesis palmitoleoyltransferase [lpxP]. 3 306 66.896 T 14-09-2016 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP GO:0008951|GO:0009409|GO:0036104 KEGG: 00600+2.3.1.24|UniPathway: UPA00030 PAJ_RS20300 4af7e3488f4df05537ee52a8adc9f0ec 286 SUPERFAMILY SSF56112 34 235 7.82E-16 T 14-09-2016 IPR011009 Protein kinase-like domain PAJ_RS20300 4af7e3488f4df05537ee52a8adc9f0ec 286 Gene3D G3DSA:3.90.1200.10 90 234 4.3E-10 T 14-09-2016 PAJ_RS20300 4af7e3488f4df05537ee52a8adc9f0ec 286 Pfam PF01636 Phosphotransferase enzyme family 56 226 6.0E-10 T 14-09-2016 IPR002575 Aminoglycoside phosphotransferase PAJ_RS17470 a832cad0c4c53bbef648f2598bf8ad4f 173 Pfam PF04220 Der GTPase activator (YihI) 14 170 2.1E-56 T 14-09-2016 IPR007336 Der GTPase activator PAJ_RS17470 a832cad0c4c53bbef648f2598bf8ad4f 173 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 173 16.976 T 14-09-2016 IPR007336 Der GTPase activator PAJ_RS08740 778c79fde53e244f1ba8e32f00cc4cdd 359 Pfam PF04443 Acyl-protein synthetase, LuxE 12 356 5.0E-55 T 14-09-2016 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723|UniPathway: UPA00569 PAJ_RS08740 778c79fde53e244f1ba8e32f00cc4cdd 359 SUPERFAMILY SSF56801 191 348 1.14E-6 T 14-09-2016 PAJ_RS07740 0597e9dc4d57b9009e129c83054b02a4 244 Pfam PF06790 Uncharacterised protein family (UPF0259) 1 242 6.1E-84 T 14-09-2016 IPR009627 Uncharacterised protein family UPF0259 PAJ_RS18370 696103238c8d5aac601ce4ed649a50b6 377 PANTHER PTHR38043 1 376 6.6E-110 T 14-09-2016 PAJ_RS18370 696103238c8d5aac601ce4ed649a50b6 377 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 34 363 3.7E-136 T 14-09-2016 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX PAJ_RS02700 afe5e7dd2b7aa7d36e6087b840be14a7 190 SUPERFAMILY SSF55729 1 160 5.0E-28 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS02700 afe5e7dd2b7aa7d36e6087b840be14a7 190 Gene3D G3DSA:3.40.630.30 1 177 8.0E-35 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase PAJ_RS02700 afe5e7dd2b7aa7d36e6087b840be14a7 190 Pfam PF13302 Acetyltransferase (GNAT) domain 9 149 2.1E-25 T 14-09-2016 IPR000182 GNAT domain GO:0008080 PAJ_RS02700 afe5e7dd2b7aa7d36e6087b840be14a7 190 PANTHER PTHR13256 1 181 6.6E-17 T 14-09-2016 PAJ_RS06370 ce534f68498ed39f6e2b6cfd831f4287 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 179 2.1E-58 T 14-09-2016 IPR018636 Protein of unknown function DUF2058 PAJ_RS02760 0081a1c7f123346f2284cb94d5f36727 37 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 29 1.0E-19 T 14-09-2016 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545|UniPathway: UPA00705 PAJ_RS02760 0081a1c7f123346f2284cb94d5f36727 37 Pfam PF08173 Membrane bound YbgT-like protein 1 26 2.5E-14 T 14-09-2016 IPR012994 Membrane bound YbgT-like PAJ_RS17785 cbb14a5c0378f0706affc853b51d0309 328 Pfam PF14518 Iron-containing redox enzyme 131 271 1.5E-9 T 14-09-2016 IPR028201 PqqC-like protein PAJ_RS17785 cbb14a5c0378f0706affc853b51d0309 328 Gene3D G3DSA:1.20.910.10 115 264 1.9E-10 T 14-09-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PAJ_RS17785 cbb14a5c0378f0706affc853b51d0309 328 SUPERFAMILY SSF48613 114 263 9.34E-14 T 14-09-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PAJ_RS01790 4f51116e7243acdaaea484ffb8779b1a 185 PANTHER PTHR38013 1 185 1.5E-48 T 14-09-2016 PAJ_RS01790 4f51116e7243acdaaea484ffb8779b1a 185 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 43 147 8.7E-41 T 14-09-2016 PAJ_RS14925 cbd4d031b12428a670fc44e96f1bba8a 492 Pfam PF00916 Sulfate permease family 6 363 1.2E-52 T 14-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 PAJ_RS14925 cbd4d031b12428a670fc44e96f1bba8a 492 PANTHER PTHR11814 1 484 3.2E-141 T 14-09-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 PAJ_RS14925 cbd4d031b12428a670fc44e96f1bba8a 492 PANTHER PTHR11814:SF123 1 484 3.2E-141 T 14-09-2016 PAJ_RS19090 a11eff6356635232f4accefc7dca92d4 109 Pfam PF04341 Protein of unknown function, DUF485 17 104 2.5E-35 T 14-09-2016 IPR007436 Protein of unknown function DUF485 PAJ_RS19090 a11eff6356635232f4accefc7dca92d4 109 PANTHER PTHR38598 8 109 4.6E-45 T 14-09-2016 PAJ_RS14640 404eae73d2acea9ff067f2cf94b9d9c0 171 Gene3D G3DSA:3.40.470.10 6 168 2.5E-54 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS14640 404eae73d2acea9ff067f2cf94b9d9c0 171 Pfam PF03167 Uracil DNA glycosylase superfamily 10 167 9.3E-23 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS14640 404eae73d2acea9ff067f2cf94b9d9c0 171 PANTHER PTHR12159 8 163 2.5E-61 T 14-09-2016 IPR015637 G/U mismatch-specific DNA glycosylase GO:0006281|GO:0019104 PAJ_RS14640 404eae73d2acea9ff067f2cf94b9d9c0 171 SUPERFAMILY SSF52141 6 166 1.7E-43 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like PAJ_RS03675 79852a33e4219056d49d10aa97bbf646 258 Gene3D G3DSA:3.40.50.620 74 210 1.2E-17 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PAJ_RS03675 79852a33e4219056d49d10aa97bbf646 258 PANTHER PTHR30336 1 249 1.1E-64 T 14-09-2016 PAJ_RS03675 79852a33e4219056d49d10aa97bbf646 258 Pfam PF02698 DUF218 domain 80 243 1.3E-25 T 14-09-2016 IPR003848 Domain of unknown function DUF218 PAJ_RS03675 79852a33e4219056d49d10aa97bbf646 258 PANTHER PTHR30336:SF1 1 249 1.1E-64 T 14-09-2016 PAJ_RS12665 dfc53f4cd01cf9c05fd9ec2c024f7c34 359 PIRSF PIRSF001361 1 354 2.0E-162 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS12665 dfc53f4cd01cf9c05fd9ec2c024f7c34 359 SUPERFAMILY SSF51569 8 347 2.2E-136 T 14-09-2016 PAJ_RS12665 dfc53f4cd01cf9c05fd9ec2c024f7c34 359 Pfam PF00793 DAHP synthetase I family 38 340 1.2E-104 T 14-09-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PAJ_RS12665 dfc53f4cd01cf9c05fd9ec2c024f7c34 359 Gene3D G3DSA:3.20.20.70 10 351 3.1E-153 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS12665 dfc53f4cd01cf9c05fd9ec2c024f7c34 359 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 9 349 2.2E-167 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS12665 dfc53f4cd01cf9c05fd9ec2c024f7c34 359 PANTHER PTHR21225 1 349 8.3E-221 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PAJ_RS09940 2ce04d017ce32a32dc6b696c7104b547 305 SUPERFAMILY SSF53448 6 229 3.84E-43 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS09940 2ce04d017ce32a32dc6b696c7104b547 305 PANTHER PTHR22916 5 214 3.2E-38 T 14-09-2016 PAJ_RS09940 2ce04d017ce32a32dc6b696c7104b547 305 Pfam PF00535 Glycosyl transferase family 2 7 118 4.6E-27 T 14-09-2016 IPR001173 Glycosyltransferase 2-like PAJ_RS09940 2ce04d017ce32a32dc6b696c7104b547 305 Gene3D G3DSA:3.90.550.10 5 223 1.6E-40 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS18845 f1eabdfffb0df6cb388233e7bcec2af6 696 Pfam PF06082 Exopolysaccharide biosynthesis protein YbjH 32 689 6.8E-270 T 14-09-2016 IPR010344 Exopolysaccharide biosynthesis protein YbjH PAJ_RS06860 3dc9fab6f49e5fb5fb8fc4920bdf63bc 306 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 76 207 5.8E-50 T 14-09-2016 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 PAJ_RS03035 136fc66c8f44780ab16edc80d2accdf7 130 Pfam PF11076 Putative inner membrane protein YbhQ 1 124 1.1E-62 T 14-09-2016 IPR021303 Uncharacterised protein family, inner membrane, YbhQ PAJ_RS18710 b2f704527e661777da053c576cccafc1 167 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 147 1.8E-52 T 14-09-2016 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 PAJ_RS18710 b2f704527e661777da053c576cccafc1 167 Hamap MF_01181 Regulator of sigma D [rsd]. 1 151 40.905 T 14-09-2016 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd PAJ_RS18710 b2f704527e661777da053c576cccafc1 167 PIRSF PIRSF016548 1 159 2.2E-48 T 14-09-2016 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 PAJ_RS06315 3ac3caee7050c804cc7bd0fe0906da7d 295 PANTHER PTHR10366:SF475 2 292 2.8E-83 T 14-09-2016 PAJ_RS06315 3ac3caee7050c804cc7bd0fe0906da7d 295 PANTHER PTHR10366 2 292 2.8E-83 T 14-09-2016 PAJ_RS06315 3ac3caee7050c804cc7bd0fe0906da7d 295 Gene3D G3DSA:3.40.50.720 1 280 2.4E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06315 3ac3caee7050c804cc7bd0fe0906da7d 295 Pfam PF13460 NAD(P)H-binding 7 163 5.5E-10 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS06315 3ac3caee7050c804cc7bd0fe0906da7d 295 SUPERFAMILY SSF51735 1 281 1.35E-40 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13965 87f9268c02b956c61337d8cd1e11450d 432 Gene3D G3DSA:3.40.50.720 16 155 1.7E-12 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13965 87f9268c02b956c61337d8cd1e11450d 432 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 20 132 4.8E-6 T 14-09-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PAJ_RS13965 87f9268c02b956c61337d8cd1e11450d 432 PANTHER PTHR37850 2 431 2.3E-123 T 14-09-2016 PAJ_RS13965 87f9268c02b956c61337d8cd1e11450d 432 SUPERFAMILY SSF51735 16 156 4.73E-13 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13965 87f9268c02b956c61337d8cd1e11450d 432 PANTHER PTHR37850:SF2 2 431 2.3E-123 T 14-09-2016 PAJ_RS08300 4777003edb107f9e87dcea6e34484b8f 76 SUPERFAMILY SSF46575 1 76 1.7E-35 T 14-09-2016 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 PAJ_RS08300 4777003edb107f9e87dcea6e34484b8f 76 Pfam PF06440 DNA polymerase III, theta subunit 2 71 2.3E-39 T 14-09-2016 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 PAJ_RS08300 4777003edb107f9e87dcea6e34484b8f 76 Gene3D G3DSA:1.10.1110.10 1 76 1.2E-44 T 14-09-2016 IPR011325 DNA polymerase III-theta, core, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PAJ_RS08300 4777003edb107f9e87dcea6e34484b8f 76 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 1 76 6.0E-26 T 14-09-2016 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 PAJ_RS06150 99d8374eb36a21c4f63100555c5a1cb1 77 PANTHER PTHR37011:SF2 3 77 2.7E-30 T 14-09-2016 PAJ_RS06150 99d8374eb36a21c4f63100555c5a1cb1 77 Pfam PF06004 Bacterial protein of unknown function (DUF903) 26 74 1.6E-19 T 14-09-2016 IPR010305 Protein of unknown function DUF903 PAJ_RS06150 99d8374eb36a21c4f63100555c5a1cb1 77 Gene3D G3DSA:2.30.30.100 21 77 2.0E-30 T 14-09-2016 PAJ_RS06150 99d8374eb36a21c4f63100555c5a1cb1 77 SUPERFAMILY SSF50182 23 75 5.23E-15 T 14-09-2016 IPR010920 LSM domain PAJ_RS06150 99d8374eb36a21c4f63100555c5a1cb1 77 PANTHER PTHR37011 3 77 2.7E-30 T 14-09-2016 PAJ_RS02225 720c86aecc27989cf221c1451c3efd0a 536 SUPERFAMILY SSF51905 1 212 2.12E-18 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PAJ_RS02225 720c86aecc27989cf221c1451c3efd0a 536 Gene3D G3DSA:3.40.50.720 123 216 2.8E-21 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS02225 720c86aecc27989cf221c1451c3efd0a 536 Gene3D G3DSA:3.40.50.720 2 67 2.8E-21 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS02225 720c86aecc27989cf221c1451c3efd0a 536 Pfam PF13454 FAD-NAD(P)-binding 5 164 1.7E-27 T 14-09-2016 PAJ_RS01575 13f05ae74f3870f61a4a9876f531ab18 185 Gene3D G3DSA:2.60.40.1620 45 176 1.0E-52 T 14-09-2016 IPR021658 Domain of unknown function DUF3251 PAJ_RS01575 13f05ae74f3870f61a4a9876f531ab18 185 Pfam PF11622 Protein of unknown function (DUF3251) 23 180 2.8E-52 T 14-09-2016 IPR021658 Domain of unknown function DUF3251 PAJ_RS08970 d0591097385ae66b4957a8979d8fc9cf 406 SUPERFAMILY SSF53448 39 403 5.34E-78 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS13105 b466ef1cec81fcaea76e9fe99684039f 266 PANTHER PTHR10953:SF159 10 164 1.0E-143 T 14-09-2016 PAJ_RS13105 b466ef1cec81fcaea76e9fe99684039f 266 PANTHER PTHR10953:SF159 196 264 1.0E-143 T 14-09-2016 PAJ_RS13105 b466ef1cec81fcaea76e9fe99684039f 266 Pfam PF00899 ThiF family 19 256 5.8E-39 T 14-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 PAJ_RS13105 b466ef1cec81fcaea76e9fe99684039f 266 SUPERFAMILY SSF69572 9 258 9.55E-65 T 14-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 PAJ_RS13105 b466ef1cec81fcaea76e9fe99684039f 266 Gene3D G3DSA:3.40.50.720 4 257 1.5E-53 T 14-09-2016 IPR016040 NAD(P)-binding domain PAJ_RS13105 b466ef1cec81fcaea76e9fe99684039f 266 PANTHER PTHR10953 10 164 1.0E-143 T 14-09-2016 PAJ_RS13105 b466ef1cec81fcaea76e9fe99684039f 266 PANTHER PTHR10953 196 264 1.0E-143 T 14-09-2016 PAJ_RS14505 dab1119300b3225927a032355c1ed4be 286 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 282 1.2E-78 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS14505 dab1119300b3225927a032355c1ed4be 286 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 281 2.3E-88 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS14505 dab1119300b3225927a032355c1ed4be 286 PANTHER PTHR30304 2 283 9.2E-85 T 14-09-2016 PAJ_RS14505 dab1119300b3225927a032355c1ed4be 286 SUPERFAMILY SSF51569 4 283 7.33E-89 T 14-09-2016 PAJ_RS14505 dab1119300b3225927a032355c1ed4be 286 Gene3D G3DSA:3.20.20.70 1 284 2.7E-97 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PAJ_RS14505 dab1119300b3225927a032355c1ed4be 286 PIRSF PIRSF001359 1 283 3.3E-90 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PAJ_RS06770 758c31a30a6ec09cde4e9ebdc7b22a11 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 5.7E-23 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PAJ_RS06770 758c31a30a6ec09cde4e9ebdc7b22a11 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 30 41 5.7E-23 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PAJ_RS06770 758c31a30a6ec09cde4e9ebdc7b22a11 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 5.7E-23 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PAJ_RS06770 758c31a30a6ec09cde4e9ebdc7b22a11 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 5.7E-23 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PAJ_RS06770 758c31a30a6ec09cde4e9ebdc7b22a11 117 SUPERFAMILY SSF46785 3 107 1.73E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06770 758c31a30a6ec09cde4e9ebdc7b22a11 117 Pfam PF01022 Bacterial regulatory protein, arsR family 15 60 1.7E-15 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PAJ_RS06770 758c31a30a6ec09cde4e9ebdc7b22a11 117 Gene3D G3DSA:1.10.10.10 7 87 9.6E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS06770 758c31a30a6ec09cde4e9ebdc7b22a11 117 PANTHER PTHR33154 8 99 1.0E-21 T 14-09-2016 PAJ_RS06770 758c31a30a6ec09cde4e9ebdc7b22a11 117 SMART SM00418 8 86 7.5E-27 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PAJ_RS22265 69ebf10e9d8f7784ae25aac3f5ec3180 231 Pfam PF04829 Pre-toxin domain with VENN motif 153 202 1.1E-19 T 14-09-2016 IPR006914 VENN motif-containing domain PAJ_RS02075 2df4b9fc074bf9bd1fe8c5038404ea1e 121 PIRSF PIRSF006298 1 119 3.5E-46 T 14-09-2016 IPR016480 Glucose translocase, bactoprenol-linked PAJ_RS02075 2df4b9fc074bf9bd1fe8c5038404ea1e 121 Pfam PF04138 GtrA-like protein 9 117 2.0E-12 T 14-09-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 PAJ_RS02075 2df4b9fc074bf9bd1fe8c5038404ea1e 121 PANTHER PTHR38459 2 121 3.3E-19 T 14-09-2016 PAJ_RS02075 2df4b9fc074bf9bd1fe8c5038404ea1e 121 PANTHER PTHR38459:SF1 2 121 3.3E-19 T 14-09-2016 PAJ_RS05740 454ba70acc1c57ad94791a8333bc9d1a 178 Pfam PF14002 YniB-like protein 15 177 1.4E-77 T 14-09-2016 IPR025229 YniB-like protein PAJ_RS05740 454ba70acc1c57ad94791a8333bc9d1a 178 ProDom PD035714 MEMBRANE REGULATOR YNIB TRANSMEMBRANE YFEABCD YFEE PROBABLE LOCUS ESCHERICHIA ECS2432 1 178 7.0E-67 T 14-09-2016 PAJ_RS11250 5f6df6b7307f030cdce81fccb87c4dc9 117 SUPERFAMILY SSF46955 3 50 3.39E-12 T 14-09-2016 IPR009061 Putative DNA-binding domain PAJ_RS11250 5f6df6b7307f030cdce81fccb87c4dc9 117 Gene3D G3DSA:1.10.10.10 2 64 2.1E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11250 5f6df6b7307f030cdce81fccb87c4dc9 117 Pfam PF07037 Putative transcription regulator (DUF1323) 6 116 1.1E-40 T 14-09-2016 IPR010749 Protein of unknown function DUF1323 PAJ_RS11250 5f6df6b7307f030cdce81fccb87c4dc9 117 ProDom PD060594 TRANSCRIPTION YFED YFEC DNA-BINDING REGULATION NEGATIVE REGULATOR STY2653 ECS3274 STY2652 6 116 9.0E-32 T 14-09-2016 IPR010749 Protein of unknown function DUF1323 PAJ_RS04405 b225b2997ee2ed7306ec59956d97a8ed 187 Pfam PF07273 Protein of unknown function (DUF1439) 28 179 4.6E-56 T 14-09-2016 IPR010835 Protein of unknown function DUF1439 PAJ_RS20345 106d261ea70f4fea8c907d1fb086f847 289 PIRSF PIRSF030850 1 289 9.5E-130 T 14-09-2016 IPR011396 Uncharacterised conserved protein UCP030850 PAJ_RS20345 106d261ea70f4fea8c907d1fb086f847 289 Pfam PF13391 HNH endonuclease 181 235 1.3E-8 T 14-09-2016 IPR003615 HNH nuclease PAJ_RS11070 9a3ce571e0f18c2b8eda79d3657d2f32 72 Pfam PF04703 FaeA-like protein 21 60 3.7E-8 T 14-09-2016 IPR006793 FaeA-like protein GO:0006355|GO:0009289 PAJ_RS11070 9a3ce571e0f18c2b8eda79d3657d2f32 72 Gene3D G3DSA:1.10.10.10 19 60 1.8E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11070 9a3ce571e0f18c2b8eda79d3657d2f32 72 SUPERFAMILY SSF46785 21 59 1.13E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PAJ_RS11465 6927fdfff68a480124fd24b77572695a 329 PANTHER PTHR32196 5 323 4.9E-114 T 14-09-2016 PAJ_RS11465 6927fdfff68a480124fd24b77572695a 329 PANTHER PTHR32196:SF35 5 323 4.9E-114 T 14-09-2016 PAJ_RS11465 6927fdfff68a480124fd24b77572695a 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 40 312 2.1E-35 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS08665 e8c7c98517d5ad01e7f75411d52a312f 359 Pfam PF01757 Acyltransferase family 10 327 1.4E-21 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 PAJ_RS16495 3599fb9168c26d6eebc166d1759e9384 219 Pfam PF02677 Uncharacterized BCR, COG1636 19 193 1.4E-63 T 14-09-2016 IPR003828 Protein of unknown function DUF208 PAJ_RS16495 3599fb9168c26d6eebc166d1759e9384 219 PANTHER PTHR36701 3 219 3.2E-90 T 14-09-2016 PAJ_RS14730 65976c7639097554bdce976311a474b6 202 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 6 142 1.5E-58 T 14-09-2016 IPR006521 Tail protein I PAJ_RS14730 65976c7639097554bdce976311a474b6 202 Pfam PF09684 Phage tail protein (Tail_P2_I) 6 141 6.3E-50 T 14-09-2016 IPR006521 Tail protein I PAJ_RS00980 c174823f5992b9028c8e76e43dcdb80e 257 Gene3D G3DSA:2.60.120.620 20 155 8.8E-7 T 14-09-2016 PAJ_RS00980 c174823f5992b9028c8e76e43dcdb80e 257 SUPERFAMILY SSF51197 22 240 4.21E-13 T 14-09-2016 PAJ_RS17995 63321cbbc3792e0ffd3fae6c42444877 247 Gene3D G3DSA:3.90.470.20 32 106 2.1E-6 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS17995 63321cbbc3792e0ffd3fae6c42444877 247 Gene3D G3DSA:3.90.470.20 107 166 4.1E-5 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS17995 63321cbbc3792e0ffd3fae6c42444877 247 SUPERFAMILY SSF56214 101 168 3.14E-5 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PAJ_RS15005 0bae887589354803570148b570e29445 115 Pfam PF13721 SecD export protein N-terminal TM region 10 104 1.8E-19 T 14-09-2016 IPR027398 SecD export protein N-terminal TM domain PAJ_RS15005 0bae887589354803570148b570e29445 115 Hamap MF_00904 Modulator protein MzrA [mzrA]. 2 115 26.727 T 14-09-2016 IPR026574 Modulator protein MzrA PAJ_RS08170 8c9671bbc663468884cfeb63d04d29d9 166 Pfam PF13185 GAF domain 41 144 1.7E-10 T 14-09-2016 IPR003018 GAF domain GO:0005515 PAJ_RS08170 8c9671bbc663468884cfeb63d04d29d9 166 SMART SM00065 9 162 2.2E-7 T 14-09-2016 IPR003018 GAF domain GO:0005515 PAJ_RS08170 8c9671bbc663468884cfeb63d04d29d9 166 PANTHER PTHR21021 1 144 1.6E-52 T 14-09-2016 PAJ_RS08170 8c9671bbc663468884cfeb63d04d29d9 166 Gene3D G3DSA:3.30.450.40 2 157 1.7E-47 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS08170 8c9671bbc663468884cfeb63d04d29d9 166 SUPERFAMILY SSF55781 2 151 1.57E-39 T 14-09-2016 IPR029016 GAF domain-like PAJ_RS06075 e3b4aa94e1e4c72ce91fd19dd95788f8 85 Pfam PF10798 Biofilm development protein YmgB/AriR 24 80 2.6E-19 T 14-09-2016 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 PAJ_RS06075 e3b4aa94e1e4c72ce91fd19dd95788f8 85 ProDom PD865043 PLASMID SPA-ORF10 3'REGION CYTOPLASMIC ORF-10 SPAS STY1854 25 82 3.0E-7 T 14-09-2016 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 PAJ_RS18860 c7f3ceca2eacc3513853fbff93cffb38 82 Pfam PF11106 Exopolysaccharide production protein YjbE 1 80 1.0E-31 T 14-09-2016 IPR025858 Exopolysaccharide production protein YjbE PAJ_RS16390 02812de844e16711c54c8bb2d80f66f5 209 Pfam PF07947 YhhN-like protein 26 206 1.9E-39 T 14-09-2016 IPR012506 YhhN-like GO:0016021 PAJ_RS04520 8b3be7afd93453e4712799bfa805d998 173 PANTHER PTHR38099 2 173 1.4E-80 T 14-09-2016 PAJ_RS04520 8b3be7afd93453e4712799bfa805d998 173 Pfam PF02620 Uncharacterized ACR, COG1399 61 171 1.9E-17 T 14-09-2016 IPR003772 Protein of unknown function DUF177 PAJ_RS11945 553ad2dd8d7ae02106bfdb9cc37008bc 208 PIRSF PIRSF008159 1 208 2.2E-64 T 14-09-2016 IPR016537 Uncharacterised conserved protein UCP008159, PAJ_RS11945 553ad2dd8d7ae02106bfdb9cc37008bc 208 Pfam PF06226 Protein of unknown function (DUF1007) 5 207 1.1E-61 T 14-09-2016 IPR010412 Protein of unknown function DUF1007 PAJ_RS03475 bd9a7521887b1c99a00f6b9f78f81f9b 222 SUPERFAMILY SSF161098 6 200 3.4E-28 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03475 bd9a7521887b1c99a00f6b9f78f81f9b 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 5 110 1.7E-14 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PAJ_RS03475 bd9a7521887b1c99a00f6b9f78f81f9b 222 PANTHER PTHR30614 1 221 2.2E-141 T 14-09-2016 PAJ_RS03475 bd9a7521887b1c99a00f6b9f78f81f9b 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 215 1.6E-15 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS03475 bd9a7521887b1c99a00f6b9f78f81f9b 222 PANTHER PTHR30614:SF10 1 221 2.2E-141 T 14-09-2016 PAJ_RS03475 bd9a7521887b1c99a00f6b9f78f81f9b 222 Gene3D G3DSA:1.10.3720.10 4 214 4.3E-35 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PAJ_RS09825 889c150bf1da30e1a6ae241b4d786330 438 Pfam PF07804 HipA-like C-terminal domain 268 353 8.5E-12 T 14-09-2016 IPR012893 HipA-like, C-terminal PAJ_RS09825 889c150bf1da30e1a6ae241b4d786330 438 Pfam PF07805 HipA-like N-terminal domain 165 255 6.6E-10 T 14-09-2016 IPR012894 HipA, N-terminal subdomain 2 PAJ_RS09825 889c150bf1da30e1a6ae241b4d786330 438 PIRSF PIRSF028135 1 438 2.0E-164 T 14-09-2016 IPR016869 Uncharacterised conserved protein UCP028135, HipA-like PAJ_RS11285 82450f3fe4c0053befd4efc5717ce5ef 116 Pfam PF14282 FlxA-like protein 12 109 3.8E-27 T 14-09-2016 IPR025577 FlxA-like protein PAJ_RS15510 309aac1a46afc44548a1a4b29bfc8802 67 Hamap MF_01546 Protein AaeX [aaeX]. 1 67 22.804 T 14-09-2016 IPR012451 Protein of unknown function DUF1656 PAJ_RS15510 309aac1a46afc44548a1a4b29bfc8802 67 Pfam PF07869 Protein of unknown function (DUF1656) 7 61 3.1E-19 T 14-09-2016 IPR012451 Protein of unknown function DUF1656 PAJ_RS15260 9a3b1e89ed1551de77d724748e56e5f6 1255 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 920 1255 5.9E-66 T 14-09-2016 IPR007452 Translocation and assembly module TamB PAJ_RS15260 9a3b1e89ed1551de77d724748e56e5f6 1255 PANTHER PTHR36985 1 1255 0.0 T 14-09-2016 PAJ_RS20975 99f160fb7b05000db80b159fc9bd464d 128 PANTHER PTHR23508 1 128 1.2E-64 T 14-09-2016 PAJ_RS20975 99f160fb7b05000db80b159fc9bd464d 128 Gene3D G3DSA:1.20.1250.20 65 128 1.6E-4 T 14-09-2016 PAJ_RS20975 99f160fb7b05000db80b159fc9bd464d 128 SUPERFAMILY SSF103473 10 128 4.58E-17 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS20975 99f160fb7b05000db80b159fc9bd464d 128 Pfam PF07690 Major Facilitator Superfamily 12 128 4.8E-9 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PAJ_RS20975 99f160fb7b05000db80b159fc9bd464d 128 PANTHER PTHR23508:SF5 1 128 1.2E-64 T 14-09-2016 PAJ_RS04180 4eec9a9fcd9f6ecdc06b3013230bc7da 121 Pfam PF16462 Phage tail assembly chaperone protein, TAC 10 121 3.5E-36 T 14-09-2016 IPR024410 Phage tail assembly chaperone protein, TAC PAJ_RS04135 894d190c18daf7410b04d5c71cdd58fa 576 Pfam PF03354 Phage Terminase 112 553 2.2E-86 T 14-09-2016 IPR005021 Phage terminase PAJ_RS04135 894d190c18daf7410b04d5c71cdd58fa 576 PANTHER PTHR41287 9 95 1.0E-112 T 14-09-2016 PAJ_RS04135 894d190c18daf7410b04d5c71cdd58fa 576 PANTHER PTHR41287 112 576 1.0E-112 T 14-09-2016 PAJ_RS13820 2b4bb093f1a4c7245f6881605c9ac077 81 Pfam PF11660 Protein of unknown function (DUF3262) 3 79 4.3E-16 T 14-09-2016 IPR021676 Protein of unknown function DUF3262 PAJ_RS13820 2b4bb093f1a4c7245f6881605c9ac077 81 TIGRFAM TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family 4 80 4.6E-21 T 14-09-2016 IPR021676 Protein of unknown function DUF3262 PAJ_RS00925 54f78a025187e01eebbc1c1ab3562c5f 243 PANTHER PTHR28047:SF1 4 234 3.4E-55 T 14-09-2016 PAJ_RS00925 54f78a025187e01eebbc1c1ab3562c5f 243 Pfam PF01177 Asp/Glu/Hydantoin racemase 6 209 1.4E-10 T 14-09-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PAJ_RS00925 54f78a025187e01eebbc1c1ab3562c5f 243 PANTHER PTHR28047 4 234 3.4E-55 T 14-09-2016 PAJ_RS11045 ec74ea5f27b0ca81921b53716d05d460 177 SUPERFAMILY SSF49401 48 177 5.97E-12 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS11045 ec74ea5f27b0ca81921b53716d05d460 177 Pfam PF00419 Fimbrial protein 41 177 1.4E-12 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS17110 27b4ddef39297be1f8221a0ffe13d664 196 Pfam PF07305 Protein of unknown function (DUF1454) 8 194 3.9E-80 T 14-09-2016 IPR009918 Protein of unknown function DUF1454 PAJ_RS10370 bffa941e284f4fdb42c86804968be01f 342 Pfam PF11199 Protein of unknown function (DUF2891) 10 329 2.4E-131 T 14-09-2016 IPR021365 Protein of unknown function DUF2891 PAJ_RS02875 376b065c92f4c113c0893fa38021773d 117 ProDom PD079292 YBGS HOMEOBOX PRECURSOR SIGNAL PROBABLE SECRETED 45 117 2.0E-5 T 14-09-2016 IPR020363 Uncharacterised protein family YbgS PAJ_RS02875 376b065c92f4c113c0893fa38021773d 117 Pfam PF13985 YbgS-like protein 2 117 4.0E-54 T 14-09-2016 IPR020363 Uncharacterised protein family YbgS PAJ_RS18330 c796b69304d7c88fe9965e96a1cfcd6c 447 Pfam PF06899 WzyE protein, O-antigen assembly polymerase 1 443 1.3E-243 T 14-09-2016 PAJ_RS07475 211c5dd2a39b2f44f432a7e8c421519e 82 Pfam PF09584 Phage shock protein PspD (Phageshock_PspD) 12 72 6.1E-30 T 14-09-2016 IPR014321 Phage shock protein, PspD PAJ_RS07475 211c5dd2a39b2f44f432a7e8c421519e 82 TIGRFAM TIGR02979 phageshock_pspD: phage shock protein PspD 16 72 8.5E-24 T 14-09-2016 IPR014321 Phage shock protein, PspD PAJ_RS03950 bce610616da3c580c57a39b78c958829 231 Pfam PF06904 Extensin-like protein C-terminus 59 231 2.2E-48 T 14-09-2016 IPR009683 Extensin-like, C-terminal PAJ_RS13845 3c8e5d104838930b358af61ceda8ad2e 598 TIGRFAM TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family 7 496 2.0E-174 T 14-09-2016 IPR021207 Integrating conjugative element protein, PFL4705 PAJ_RS10840 de5f8903a9750073e6fcf54b01d4729a 143 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 6 137 1.3E-18 T 14-09-2016 IPR009936 Protein of unknown function DUF1468 PAJ_RS17860 52b69baa5177e9672849a233d971a9e1 178 Hamap MF_01061 Primosomal protein 1 [dnaT]. 3 178 39.02 T 14-09-2016 IPR020917 Primosomal protein 1 GO:0006260 PAJ_RS14365 40b91dde1bc71c0a730d6c364ea3e3a5 247 Pfam PF01618 MotA/TolQ/ExbB proton channel family 99 207 1.0E-34 T 14-09-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PAJ_RS14365 40b91dde1bc71c0a730d6c364ea3e3a5 247 PANTHER PTHR30572:SF11 4 227 3.0E-76 T 14-09-2016 PAJ_RS14365 40b91dde1bc71c0a730d6c364ea3e3a5 247 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 12 223 7.2E-96 T 14-09-2016 IPR014164 TonB-system energizer ExbB type-1 GO:0006810|GO:0016020 PAJ_RS14365 40b91dde1bc71c0a730d6c364ea3e3a5 247 PANTHER PTHR30572 4 227 3.0E-76 T 14-09-2016 PAJ_RS04205 85a3f8bffb1f80f131fd63a1728ac8f5 207 Pfam PF06805 Bacteriophage lambda tail assembly protein I 6 49 3.6E-5 T 14-09-2016 IPR010654 Bacteriophage lambda tail assembly I PAJ_RS11080 2b8380fba7b20fb95ef353f87ec6c8fa 206 Gene3D G3DSA:2.60.40.1090 49 206 3.0E-18 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS11080 2b8380fba7b20fb95ef353f87ec6c8fa 206 SUPERFAMILY SSF49401 50 206 1.99E-19 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS07400 ebf0353aabfbf97ef73a562347e8e161 106 Pfam PF07027 Protein of unknown function (DUF1318) 18 106 2.4E-28 T 14-09-2016 IPR008309 Uncharacterised conserved protein UCP025560 PAJ_RS07400 ebf0353aabfbf97ef73a562347e8e161 106 PIRSF PIRSF025560 1 106 2.4E-34 T 14-09-2016 IPR008309 Uncharacterised conserved protein UCP025560 PAJ_RS07305 e99e9ad85cfb0ca4b9811b0d4151c15b 144 PANTHER PTHR33452 1 137 1.2E-16 T 14-09-2016 PAJ_RS07305 e99e9ad85cfb0ca4b9811b0d4151c15b 144 Pfam PF07681 DoxX 20 99 2.2E-16 T 14-09-2016 IPR032808 DoxX family PAJ_RS14550 cc40b0d277beaba19f7322de25e4e40e 489 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 438 2.2E-131 T 14-09-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 PAJ_RS14550 cc40b0d277beaba19f7322de25e4e40e 489 Pfam PF02321 Outer membrane efflux protein 25 209 1.4E-26 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS14550 cc40b0d277beaba19f7322de25e4e40e 489 Pfam PF02321 Outer membrane efflux protein 232 425 4.7E-34 T 14-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PAJ_RS14550 cc40b0d277beaba19f7322de25e4e40e 489 Gene3D G3DSA:1.20.1600.10 14 430 3.6E-89 T 14-09-2016 PAJ_RS14550 cc40b0d277beaba19f7322de25e4e40e 489 SUPERFAMILY SSF56954 25 439 4.05E-94 T 14-09-2016 PAJ_RS14550 cc40b0d277beaba19f7322de25e4e40e 489 PANTHER PTHR30026:SF3 1 451 2.6E-164 T 14-09-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 PAJ_RS14550 cc40b0d277beaba19f7322de25e4e40e 489 PANTHER PTHR30026 1 451 2.6E-164 T 14-09-2016 PAJ_RS20920 97bfddbe496d021df074cd9c1bc17c8f 157 PANTHER PTHR37952 1 156 1.3E-82 T 14-09-2016 PAJ_RS20920 97bfddbe496d021df074cd9c1bc17c8f 157 PIRSF PIRSF003174 1 157 1.7E-67 T 14-09-2016 IPR010292 Uncharacterised protein family CreA PAJ_RS20920 97bfddbe496d021df074cd9c1bc17c8f 157 PANTHER PTHR37952:SF2 1 156 1.3E-82 T 14-09-2016 PAJ_RS20920 97bfddbe496d021df074cd9c1bc17c8f 157 Pfam PF05981 CreA protein 25 156 3.0E-57 T 14-09-2016 IPR010292 Uncharacterised protein family CreA PAJ_RS19555 bf54dce069eb1ba4f23a48d798c36bfc 434 Pfam PF01943 Polysaccharide biosynthesis protein 6 275 7.2E-10 T 14-09-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 PAJ_RS19555 bf54dce069eb1ba4f23a48d798c36bfc 434 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 329 405 2.7E-7 T 14-09-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain PAJ_RS03495 6eb716e474d6b219bdbad71b273410de 179 Pfam PF12883 Protein of unknown function (DUF3828) 40 159 6.4E-15 T 14-09-2016 IPR024289 Domain of unknown function DUF3828 PAJ_RS20245 797ff58265ee7a8b8e1d1f9cd4bac083 441 Pfam PF15611 EH_Signature domain 91 435 7.3E-49 T 14-09-2016 IPR028943 EH signature domain PAJ_RS02915 c8e65739c0727f07d519a771feca6282 257 Gene3D G3DSA:3.40.190.10 26 115 1.3E-14 T 14-09-2016 PAJ_RS02915 c8e65739c0727f07d519a771feca6282 257 Gene3D G3DSA:3.40.190.10 217 253 1.3E-14 T 14-09-2016 PAJ_RS02915 c8e65739c0727f07d519a771feca6282 257 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 33 252 5.7E-77 T 14-09-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 PAJ_RS02915 c8e65739c0727f07d519a771feca6282 257 SUPERFAMILY SSF53850 26 255 9.88E-71 T 14-09-2016 PAJ_RS02915 c8e65739c0727f07d519a771feca6282 257 Pfam PF13531 Bacterial extracellular solute-binding protein 28 253 5.0E-47 T 14-09-2016 PAJ_RS02915 c8e65739c0727f07d519a771feca6282 257 PIRSF PIRSF004846 1 257 1.7E-80 T 14-09-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 PAJ_RS02915 c8e65739c0727f07d519a771feca6282 257 Gene3D G3DSA:3.40.190.10 116 216 7.6E-45 T 14-09-2016 PAJ_RS02915 c8e65739c0727f07d519a771feca6282 257 PANTHER PTHR30632:SF0 10 255 3.0E-71 T 14-09-2016 PAJ_RS02915 c8e65739c0727f07d519a771feca6282 257 PANTHER PTHR30632 10 255 3.0E-71 T 14-09-2016 PAJ_RS17780 be52c84d06a0024e7a7fd9f246ff7797 389 SUPERFAMILY SSF103473 3 373 2.88E-20 T 14-09-2016 IPR020846 Major facilitator superfamily domain PAJ_RS17780 be52c84d06a0024e7a7fd9f246ff7797 389 Gene3D G3DSA:1.20.1250.20 2 171 4.1E-13 T 14-09-2016 PAJ_RS10950 4b6bc87faafc99979d4568faa5ae34e7 151 PANTHER PTHR30009 1 151 8.4E-37 T 14-09-2016 PAJ_RS10950 4b6bc87faafc99979d4568faa5ae34e7 151 PANTHER PTHR30009:SF6 1 151 8.4E-37 T 14-09-2016 PAJ_RS10950 4b6bc87faafc99979d4568faa5ae34e7 151 Pfam PF03918 Cytochrome C biogenesis protein 8 145 1.3E-55 T 14-09-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family PAJ_RS00130 b41dace361fdfd2e604403f633205a2b 160 Pfam PF00186 Dihydrofolate reductase 1 158 9.9E-58 T 14-09-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PAJ_RS00130 b41dace361fdfd2e604403f633205a2b 160 PANTHER PTHR22778:SF16 1 160 3.6E-46 T 14-09-2016 PAJ_RS00130 b41dace361fdfd2e604403f633205a2b 160 PANTHER PTHR22778 1 160 3.6E-46 T 14-09-2016 PAJ_RS00130 b41dace361fdfd2e604403f633205a2b 160 PRINTS PR00070 Dihydrofolate reductase signature 27 35 1.4E-13 T 14-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PAJ_RS00130 b41dace361fdfd2e604403f633205a2b 160 PRINTS PR00070 Dihydrofolate reductase signature 90 104 1.4E-13 T 14-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PAJ_RS00130 b41dace361fdfd2e604403f633205a2b 160 PRINTS PR00070 Dihydrofolate reductase signature 40 51 1.4E-13 T 14-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PAJ_RS00130 b41dace361fdfd2e604403f633205a2b 160 PRINTS PR00070 Dihydrofolate reductase signature 13 23 1.4E-13 T 14-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PAJ_RS00130 b41dace361fdfd2e604403f633205a2b 160 SUPERFAMILY SSF53597 1 159 1.4E-54 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain PAJ_RS00130 b41dace361fdfd2e604403f633205a2b 160 PIRSF PIRSF000194 1 160 5.2E-57 T 14-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PAJ_RS00130 b41dace361fdfd2e604403f633205a2b 160 Gene3D G3DSA:3.40.430.10 1 159 7.6E-60 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain PAJ_RS12200 38041ef6be915e7c4cfca06eb5bc66aa 916 Gene3D G3DSA:3.20.20.140 488 599 8.9E-25 T 14-09-2016 PAJ_RS12200 38041ef6be915e7c4cfca06eb5bc66aa 916 Gene3D G3DSA:3.20.20.140 792 880 8.9E-25 T 14-09-2016 PAJ_RS12200 38041ef6be915e7c4cfca06eb5bc66aa 916 SUPERFAMILY SSF51556 792 900 9.93E-11 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS12200 38041ef6be915e7c4cfca06eb5bc66aa 916 SUPERFAMILY SSF51556 511 600 9.93E-11 T 14-09-2016 IPR032466 Metal-dependent hydrolase PAJ_RS17035 5d5d81f8ff29b529b10833fcd143059a 105 Hamap MF_00744 Met repressor [metJ]. 1 105 40.412 T 14-09-2016 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 PAJ_RS17035 5d5d81f8ff29b529b10833fcd143059a 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 2.3E-58 T 14-09-2016 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 PAJ_RS17035 5d5d81f8ff29b529b10833fcd143059a 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 6.0E-46 T 14-09-2016 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 PAJ_RS17035 5d5d81f8ff29b529b10833fcd143059a 105 SUPERFAMILY SSF47598 2 105 1.69E-57 T 14-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 PAJ_RS17035 5d5d81f8ff29b529b10833fcd143059a 105 Gene3D G3DSA:1.10.140.10 2 105 1.9E-64 T 14-09-2016 IPR023453 Methionine repressor MetJ domain PAJ_RS13510 148506012fc7ffe8589fbfebadc9f2ec 89 SUPERFAMILY SSF52794 1 87 3.01E-20 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS13510 148506012fc7ffe8589fbfebadc9f2ec 89 Gene3D G3DSA:3.40.50.270 2 86 1.4E-12 T 14-09-2016 PAJ_RS13510 148506012fc7ffe8589fbfebadc9f2ec 89 PANTHER PTHR33843:SF2 1 89 2.1E-29 T 14-09-2016 PAJ_RS13510 148506012fc7ffe8589fbfebadc9f2ec 89 PANTHER PTHR33843 1 89 2.1E-29 T 14-09-2016 PAJ_RS13510 148506012fc7ffe8589fbfebadc9f2ec 89 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 83 1.0E-14 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PAJ_RS01195 2a8db5503b08b062623de3a0c5a74e2b 155 Gene3D G3DSA:1.10.530.40 3 152 2.9E-26 T 14-09-2016 IPR023347 Lysozyme domain GO:0003796 PAJ_RS01195 2a8db5503b08b062623de3a0c5a74e2b 155 SUPERFAMILY SSF53955 3 149 4.86E-26 T 14-09-2016 IPR023346 Lysozyme-like domain PAJ_RS16275 c37248fd86552ff33dff294056872a43 231 PANTHER PTHR13903:SF7 1 231 2.4E-114 T 14-09-2016 PAJ_RS16275 c37248fd86552ff33dff294056872a43 231 Pfam PF02678 Pirin 7 119 1.1E-36 T 14-09-2016 IPR003829 Pirin, N-terminal domain PAJ_RS16275 c37248fd86552ff33dff294056872a43 231 PIRSF PIRSF006232 1 230 1.0E-54 T 14-09-2016 IPR012093 Pirin PAJ_RS16275 c37248fd86552ff33dff294056872a43 231 Gene3D G3DSA:2.60.120.10 4 230 2.0E-67 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS16275 c37248fd86552ff33dff294056872a43 231 PANTHER PTHR13903 1 231 2.4E-114 T 14-09-2016 IPR012093 Pirin PAJ_RS16275 c37248fd86552ff33dff294056872a43 231 SUPERFAMILY SSF51182 1 231 5.71E-78 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS19345 da74477093a0a106867f26ef9c9cc6b1 106 SUPERFAMILY SSF75169 2 106 4.59E-13 T 14-09-2016 IPR027396 DsrEFH-like PAJ_RS19345 da74477093a0a106867f26ef9c9cc6b1 106 Gene3D G3DSA:3.40.1260.10 1 106 1.2E-18 T 14-09-2016 IPR027396 DsrEFH-like PAJ_RS09165 cd31ab63a8d28775cea4e3dc946be3b9 130 Pfam PF13665 Domain of unknown function (DUF4150) 10 115 5.7E-42 T 14-09-2016 IPR025425 Domain of unknown function DUF4150 PAJ_RS10565 2a2c667d207e160a17e7a9f923ab0f99 307 SUPERFAMILY SSF53474 69 300 7.07E-27 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS10565 2a2c667d207e160a17e7a9f923ab0f99 307 Pfam PF00326 Prolyl oligopeptidase family 144 300 6.1E-10 T 14-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 PAJ_RS10565 2a2c667d207e160a17e7a9f923ab0f99 307 PANTHER PTHR23024 60 302 2.3E-30 T 14-09-2016 PAJ_RS10565 2a2c667d207e160a17e7a9f923ab0f99 307 Gene3D G3DSA:3.40.50.1820 65 300 2.6E-49 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS10565 2a2c667d207e160a17e7a9f923ab0f99 307 PANTHER PTHR23024:SF41 60 302 2.3E-30 T 14-09-2016 PAJ_RS05205 439b483f3820419132c435b15cb81c5e 170 Gene3D G3DSA:2.60.40.1090 31 169 1.5E-22 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS05205 439b483f3820419132c435b15cb81c5e 170 SUPERFAMILY SSF49401 31 170 2.24E-24 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS05205 439b483f3820419132c435b15cb81c5e 170 PANTHER PTHR33420 3 170 8.7E-38 T 14-09-2016 PAJ_RS05205 439b483f3820419132c435b15cb81c5e 170 PANTHER PTHR33420:SF6 3 170 8.7E-38 T 14-09-2016 PAJ_RS20655 5434dc24d191e09eb33d7c2d0a9ad7ad 337 SUPERFAMILY SSF53448 57 209 3.75E-10 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases PAJ_RS20655 5434dc24d191e09eb33d7c2d0a9ad7ad 337 Pfam PF05704 Capsular polysaccharide synthesis protein 58 210 7.4E-12 T 14-09-2016 IPR008441 Capsular polysaccharide synthesis PAJ_RS15720 b7c822adefd4ecd8de4a82a1bf4dead0 122 PANTHER PTHR39158 1 119 4.5E-31 T 14-09-2016 PAJ_RS15720 b7c822adefd4ecd8de4a82a1bf4dead0 122 Pfam PF09350 Domain of unknown function (DUF1992) 7 73 8.5E-23 T 14-09-2016 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain PAJ_RS13780 e802b904e15cec386ffc8121a94ea933 337 PANTHER PTHR33055:SF2 2 329 2.7E-105 T 14-09-2016 PAJ_RS13780 e802b904e15cec386ffc8121a94ea933 337 Pfam PF01548 Transposase 6 145 3.3E-9 T 14-09-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PAJ_RS13780 e802b904e15cec386ffc8121a94ea933 337 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 289 4.7E-21 T 14-09-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PAJ_RS13780 e802b904e15cec386ffc8121a94ea933 337 PANTHER PTHR33055 2 329 2.7E-105 T 14-09-2016 PAJ_RS05135 e802b904e15cec386ffc8121a94ea933 337 PANTHER PTHR33055:SF2 2 329 2.7E-105 T 14-09-2016 PAJ_RS05135 e802b904e15cec386ffc8121a94ea933 337 Pfam PF01548 Transposase 6 145 3.3E-9 T 14-09-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PAJ_RS05135 e802b904e15cec386ffc8121a94ea933 337 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 289 4.7E-21 T 14-09-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PAJ_RS05135 e802b904e15cec386ffc8121a94ea933 337 PANTHER PTHR33055 2 329 2.7E-105 T 14-09-2016 PAJ_RS15300 f820c8a36770e758a6ca7fed9f3b98a6 182 Pfam PF04225 Opacity-associated protein A LysM-like domain 98 180 3.6E-33 T 14-09-2016 IPR007340 Opacity-associated protein A PAJ_RS15300 f820c8a36770e758a6ca7fed9f3b98a6 182 Pfam PF08525 Opacity-associated protein A N-terminal motif 25 52 1.0E-8 T 14-09-2016 IPR013731 Opacity-associated protein A, N-terminal PAJ_RS04600 2eae985e19f3b5c54569447f04ed568d 123 Pfam PF07233 Protein of unknown function (DUF1425) 32 122 1.6E-25 T 14-09-2016 IPR010824 Protein of unknown function DUF1425 PAJ_RS13520 126cda28bc56cf97acaf4c93c3509ff9 238 Pfam PF11101 Protein of unknown function (DUF2884) 23 235 5.4E-40 T 14-09-2016 IPR021307 Protein of unknown function DUF2884 PAJ_RS08735 57d3742e83e4ce77e1a57bafeb579a06 410 Pfam PF05893 Acyl-CoA reductase (LuxC) 75 408 4.9E-30 T 14-09-2016 IPR008670 Acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723|UniPathway: UPA00569 PAJ_RS11095 8551846ba666f76f35626199c666116e 178 SUPERFAMILY SSF49401 33 178 3.28E-24 T 14-09-2016 IPR008966 Adhesion domain PAJ_RS11095 8551846ba666f76f35626199c666116e 178 Gene3D G3DSA:2.60.40.1090 31 178 1.1E-19 T 14-09-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PAJ_RS18990 ce41263a60600e2c06885718fc18597a 81 TIGRFAM TIGR04076 TIGR04076: TIGR04076 family protein 3 76 2.2E-15 T 14-09-2016 IPR023811 Conserved hypothetical protein CHP04076 PAJ_RS09275 d060c655d19dccc7f0bbae693bd2786e 176 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 9 162 4.1E-58 T 14-09-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 PAJ_RS09275 d060c655d19dccc7f0bbae693bd2786e 176 PANTHER PTHR35850 3 176 2.9E-103 T 14-09-2016 PAJ_RS09275 d060c655d19dccc7f0bbae693bd2786e 176 PIRSF PIRSF028301 3 176 1.2E-61 T 14-09-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 PAJ_RS09275 d060c655d19dccc7f0bbae693bd2786e 176 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 13 162 2.7E-59 T 14-09-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 PAJ_RS09275 d060c655d19dccc7f0bbae693bd2786e 176 PANTHER PTHR35850:SF1 3 176 2.9E-103 T 14-09-2016 PAJ_RS08080 255cf421b3f8a724cc6c9e820ee51fc0 187 PANTHER PTHR12992 27 186 1.5E-53 T 14-09-2016 PAJ_RS08080 255cf421b3f8a724cc6c9e820ee51fc0 187 Gene3D G3DSA:3.90.79.10 15 183 1.0E-40 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS08080 255cf421b3f8a724cc6c9e820ee51fc0 187 Pfam PF00293 NUDIX domain 27 110 1.4E-15 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PAJ_RS08080 255cf421b3f8a724cc6c9e820ee51fc0 187 ProSitePatterns PS01293 Nudix CoA signature. 44 64 - T 14-09-2016 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 PAJ_RS08080 255cf421b3f8a724cc6c9e820ee51fc0 187 SUPERFAMILY SSF55811 24 181 9.34E-35 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PAJ_RS09670 b68682fa06bcacecf38ab5931ce8a847 73 Gene3D G3DSA:2.10.260.10 38 69 9.2E-4 T 14-09-2016 PAJ_RS09670 b68682fa06bcacecf38ab5931ce8a847 73 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 20 69 1.9E-15 T 14-09-2016 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 PAJ_RS10425 59d6beab9d43e3635840b87f031c7c48 141 PANTHER PTHR30558 17 134 2.5E-23 T 14-09-2016 PAJ_RS10425 59d6beab9d43e3635840b87f031c7c48 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 16 136 1.7E-25 T 14-09-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 PAJ_RS18740 e26ce331dde2168611c24f4b58e9326f 220 Pfam PF07356 Protein of unknown function (DUF1481) 31 215 4.5E-62 T 14-09-2016 IPR010858 Protein of unknown function DUF1481 PAJ_RS06365 42796510b8404f16463350bf92767057 160 Gene3D G3DSA:2.40.50.140 2 70 1.3E-19 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS06365 42796510b8404f16463350bf92767057 160 Pfam PF00313 'Cold-shock' DNA-binding domain 4 63 1.9E-8 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PAJ_RS06365 42796510b8404f16463350bf92767057 160 SUPERFAMILY SSF50249 3 64 1.37E-10 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold PAJ_RS13885 0abf473380c59a37ec496c238044bec3 471 TIGRFAM TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family 44 464 1.3E-169 T 14-09-2016 IPR021204 Integrating conjugative element protein, PFL4711 PAJ_RS10420 0c3d3ca8f2844fb781b7b873c66b1d71 250 Pfam PF01618 MotA/TolQ/ExbB proton channel family 92 205 1.7E-36 T 14-09-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PAJ_RS10420 0c3d3ca8f2844fb781b7b873c66b1d71 250 PANTHER PTHR30625 15 241 9.4E-41 T 14-09-2016 PAJ_RS10420 0c3d3ca8f2844fb781b7b873c66b1d71 250 PANTHER PTHR30625:SF3 15 241 9.4E-41 T 14-09-2016 PAJ_RS07970 deac76fd17ae9ad8e517ae2923910993 77 Pfam PF07351 Protein of unknown function (DUF1480) 4 74 1.6E-25 T 14-09-2016 IPR009950 Protein of unknown function DUF1480 PAJ_RS07970 deac76fd17ae9ad8e517ae2923910993 77 ProDom PD060427 YEBV CYTOPLASMIC Y1856 ESCHERICHIA ECS2546 YPO1694 COLI STY1982 SIMILAR 4 74 2.0E-15 T 14-09-2016 IPR009950 Protein of unknown function DUF1480 PAJ_RS18820 55442bf1fb37855ae260291f575b00dd 420 Gene3D G3DSA:2.40.160.10 32 392 1.4E-10 T 14-09-2016 IPR023614 Porin domain PAJ_RS18170 aeedf4a5896dea86e007184c32849838 195 Pfam PF17037 Cellulose biosynthesis protein BcsO 1 195 4.7E-28 T 14-09-2016 IPR031484 Cellulose biosynthesis protein BcsO PAJ_RS02000 5bdea682fcaeb54c3bc9972a500c1dd8 440 Pfam PF10011 Predicted membrane protein (DUF2254) 14 368 3.6E-93 T 14-09-2016 IPR018723 Protein of unknown function DUF2254, membrane PAJ_RS04045 8257be635c1ff5a83aa5027179ec8d2a 178 Gene3D G3DSA:1.10.3680.10 93 140 4.8E-4 T 14-09-2016 IPR029024 TerB-like PAJ_RS11000 647daa4e64618085d7d4e327099a45a4 272 Pfam PF13988 Protein of unknown function (DUF4225) 75 239 3.8E-57 T 14-09-2016 IPR025320 Protein of unknown function DUF4225 PAJ_RS10320 c19240be664c66c838d187c3c9b96877 106 ProDom PD073777 YEJG CYTOPLASMIC SIMILAR Y2914 YPO1269 STY2456 ECS3073 ESCHERICHIA COLI 2 102 2.0E-21 T 14-09-2016 IPR020489 Uncharacterised protein family YejG PAJ_RS10320 c19240be664c66c838d187c3c9b96877 106 Pfam PF13989 YejG-like protein 2 103 2.5E-43 T 14-09-2016 IPR020489 Uncharacterised protein family YejG PAJ_RS13165 2ef99246e79b9b22d274747ce47a94b2 79 Pfam PF12528 Type II secretion prepilin peptidase dependent protein C 11 79 1.5E-18 T 14-09-2016 IPR022204 Prepilin peptidase dependent protein C PAJ_RS04080 f96b501828c7ade8a25e8b34d659ce6a 133 Pfam PF06530 Phage antitermination protein Q 2 122 9.0E-35 T 14-09-2016 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 PAJ_RS04170 b0d476596471a4b6ec65481a61f96126 133 Pfam PF04883 Bacteriophage HK97-gp10, putative tail-component 10 96 1.4E-5 T 14-09-2016 IPR010064 Bacteriophage HK97-gp10, putative tail-component PAJ_RS04170 b0d476596471a4b6ec65481a61f96126 133 TIGRFAM TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family 6 128 4.2E-15 T 14-09-2016 IPR010064 Bacteriophage HK97-gp10, putative tail-component PAJ_RS12215 b86d1c7a7919888f506efb398ebf934e 139 ProDom PD012854 PLASMID KLCA ANTIRESTRICTION YFJX YCIB ARDB STABLE YFEB Z1216 C0275 46 139 1.0E-25 T 14-09-2016 IPR004914 Antirestriction protein PAJ_RS12215 b86d1c7a7919888f506efb398ebf934e 139 Pfam PF03230 Antirestriction protein 49 139 4.7E-34 T 14-09-2016 IPR004914 Antirestriction protein PAJ_RS05045 e6d26ab2df5109c92e834620a033455a 211 Pfam PF10026 Predicted Zn-dependent protease (DUF2268) 25 205 4.3E-37 T 14-09-2016 IPR018728 Domain of unknown function DUF2268 PAJ_RS06865 59bb6c9bf090a5e6f4f0945b5c327358 342 PIRSF PIRSF031982 1 342 3.5E-88 T 14-09-2016 IPR016986 Uncharacterised conserved protein UCP031982, alpha/beta hydrolase, XabL PAJ_RS06865 59bb6c9bf090a5e6f4f0945b5c327358 342 SUPERFAMILY SSF53474 32 172 1.45E-31 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS06865 59bb6c9bf090a5e6f4f0945b5c327358 342 SUPERFAMILY SSF53474 215 294 1.45E-31 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS06865 59bb6c9bf090a5e6f4f0945b5c327358 342 Gene3D G3DSA:3.40.50.1820 21 172 5.3E-48 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS06865 59bb6c9bf090a5e6f4f0945b5c327358 342 Gene3D G3DSA:3.40.50.1820 215 330 5.3E-48 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold PAJ_RS06865 59bb6c9bf090a5e6f4f0945b5c327358 342 Pfam PF12146 Serine aminopeptidase, S33 77 171 3.4E-8 T 14-09-2016 IPR022742 Serine aminopeptidase, S33 PAJ_RS02105 32a02b2de52f53dbc4106a86be3dbc3e 238 Pfam PF15657 HNH/Endo VII superfamily nuclease toxins 177 238 2.4E-12 T 14-09-2016 IPR028048 HNH/Endo VII superfamily nuclease toxins PAJ_RS17675 e7adb272a29ee319a38c3de38af083a0 127 Gene3D G3DSA:1.20.5.1050 62 115 0.001 T 14-09-2016 PAJ_RS05430 8c0dbe26902356ca3bb59ebc363cb58e 129 SUPERFAMILY SSF54593 12 108 6.87E-5 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PAJ_RS15115 f4744be457bd8c54b5b59b090abfbd98 246 Pfam PF07071 Protein of unknown function (DUF1341) 8 225 1.1E-108 T 14-09-2016 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 PAJ_RS15115 f4744be457bd8c54b5b59b090abfbd98 246 TIGRFAM TIGR03581 EF_0839: conserved hypothetical protein EF_0839/AHA_3917 8 242 2.8E-119 T 14-09-2016 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 PAJ_RS15115 f4744be457bd8c54b5b59b090abfbd98 246 SUPERFAMILY SSF51569 55 205 9.77E-7 T 14-09-2016 PAJ_RS18435 3b8301d5d7c1a0e92c7e6e72ca95ab68 157 Gene3D G3DSA:3.10.450.50 36 146 4.6E-12 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS18435 3b8301d5d7c1a0e92c7e6e72ca95ab68 157 Pfam PF07366 SnoaL-like polyketide cyclase 41 147 5.7E-15 T 14-09-2016 IPR009959 Polyketide cyclase SnoaL-like domain PAJ_RS18435 3b8301d5d7c1a0e92c7e6e72ca95ab68 157 SUPERFAMILY SSF54427 36 147 1.84E-25 T 14-09-2016 IPR032710 NTF2-like domain PAJ_RS16965 86cd2c5dc2f584749920f7a632cd474c 117 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 7 115 2.0E-34 T 14-09-2016 IPR009867 Protein of unknown function DUF1422 PAJ_RS16965 86cd2c5dc2f584749920f7a632cd474c 117 Pfam PF07226 Protein of unknown function (DUF1422) 6 114 8.3E-50 T 14-09-2016 IPR009867 Protein of unknown function DUF1422 PAJ_RS18025 31772a1fbd64a2d21d9c683dc472d0a1 246 PANTHER PTHR38776 1 246 1.8E-38 T 14-09-2016 PAJ_RS18025 31772a1fbd64a2d21d9c683dc472d0a1 246 Pfam PF06629 MltA-interacting protein MipA 28 246 1.1E-31 T 14-09-2016 IPR010583 MltA-interacting MipA PAJ_RS04760 0b0f2a0db3b9f592707b8fd6623efdb6 273 ProDom PD116027 TRANSCRIPTION DNA-BINDING REGULATION RMBA YQEH ORF3-QACEDELTA1 FUSION CYTOPLASMIC ECS3703 TRANSMEMBRANE 80 270 2.0E-23 T 14-09-2016 PAJ_RS06620 a3a2f2fc69abd779bf6c6db06ead3c31 213 Gene3D G3DSA:3.40.50.300 8 135 3.5E-14 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS06620 a3a2f2fc69abd779bf6c6db06ead3c31 213 SUPERFAMILY SSF52540 9 180 5.06E-13 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PAJ_RS20315 e1c3e801012e9ceebf384cfa764b9b25 275 Pfam PF13988 Protein of unknown function (DUF4225) 81 243 2.2E-45 T 14-09-2016 IPR025320 Protein of unknown function DUF4225 PAJ_RS15025 46759187c422cdb214e3a0699449a76f 94 Pfam PF13997 YqjK-like protein 13 85 3.6E-29 T 14-09-2016 IPR025612 YqjK-like protein PAJ_RS16095 3bdde8f0e07a9bdd6e9261b201d2eb34 180 Pfam PF05137 Fimbrial assembly protein (PilN) 101 174 9.9E-10 T 14-09-2016 IPR007813 Fimbrial assembly PilN PAJ_RS16330 68363a5a2ecc7f11a0bee7f1eeb77511 423 Pfam PF02653 Branched-chain amino acid transport system / permease component 112 397 1.4E-57 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PAJ_RS16330 68363a5a2ecc7f11a0bee7f1eeb77511 423 PANTHER PTHR30482 59 417 8.2E-205 T 14-09-2016 PAJ_RS16330 68363a5a2ecc7f11a0bee7f1eeb77511 423 Pfam PF11862 Domain of unknown function (DUF3382) 6 102 2.9E-23 T 14-09-2016 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal PAJ_RS16330 68363a5a2ecc7f11a0bee7f1eeb77511 423 PANTHER PTHR30482:SF9 59 417 8.2E-205 T 14-09-2016 PAJ_RS07485 be1ec4745323110ee731a85b0852ca1c 75 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 1.0E-33 T 14-09-2016 IPR009554 Phage shock protein B GO:0006355|GO:0009271 PAJ_RS07485 be1ec4745323110ee731a85b0852ca1c 75 Pfam PF06667 Phage shock protein B 3 74 2.4E-33 T 14-09-2016 IPR009554 Phage shock protein B GO:0006355|GO:0009271 PAJ_RS14265 7fecd34938f989ec0ac9dbec424834fb 299 SUPERFAMILY SSF53850 52 283 4.21E-42 T 14-09-2016 PAJ_RS14265 7fecd34938f989ec0ac9dbec424834fb 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 56 282 1.2E-34 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS14265 7fecd34938f989ec0ac9dbec424834fb 299 Gene3D G3DSA:3.40.190.10 244 284 2.6E-21 T 14-09-2016 PAJ_RS14265 7fecd34938f989ec0ac9dbec424834fb 299 Gene3D G3DSA:3.40.190.10 53 134 2.6E-21 T 14-09-2016 PAJ_RS14265 7fecd34938f989ec0ac9dbec424834fb 299 SMART SM00062 55 284 1.7E-27 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PAJ_RS14265 7fecd34938f989ec0ac9dbec424834fb 299 Gene3D G3DSA:3.40.190.10 135 242 5.6E-26 T 14-09-2016 PAJ_RS10000 aa79a1d8f2d5a79052ded7bccb8dc42d 160 Pfam PF00563 EAL domain 4 144 2.3E-14 T 14-09-2016 IPR001633 EAL domain PAJ_RS10000 aa79a1d8f2d5a79052ded7bccb8dc42d 160 SUPERFAMILY SSF141868 4 150 3.4E-12 T 14-09-2016 IPR001633 EAL domain PAJ_RS10000 aa79a1d8f2d5a79052ded7bccb8dc42d 160 Gene3D G3DSA:3.20.20.450 4 152 1.6E-12 T 14-09-2016 IPR001633 EAL domain PAJ_RS20700 89d75ee2a4980cf7d839895b97163b2d 78 ProDom PD058594 MEMBRANE INNER C5447 MAJOR ECS5328 THE SUPERFAMILY PERMEASES STY4905 YJJZ 6 76 1.0E-10 T 14-09-2016 IPR009885 Protein of unknown function DUF1435 PAJ_RS20700 89d75ee2a4980cf7d839895b97163b2d 78 Pfam PF07256 Protein of unknown function (DUF1435) 5 73 3.7E-27 T 14-09-2016 IPR009885 Protein of unknown function DUF1435 PAJ_RS14695 da4c3a53696a461fccebebf20bf248bf 98 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 14 92 1.1E-9 T 14-09-2016 IPR019289 Bacteriophage tail protein Gp41, putative PAJ_RS14675 b597dbc7c882d9bcbf3693d5d7ef8e81 73 Pfam PF04606 Ogr/Delta-like zinc finger 3 48 1.8E-18 T 14-09-2016 IPR007684 Zinc finger, Ogr/Delta-type PAJ_RS06230 26c8fd6b0d8a9116377cc4d6fa8ccb65 147 Pfam PF10754 Protein of unknown function (DUF2569) 9 145 5.6E-44 T 14-09-2016 IPR019690 Protein of unknown function DUF2569 PAJ_RS18325 56ffb795ed0cda5884fa1152b12e6871 355 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 2 350 1.6E-161 T 14-09-2016 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 UniPathway: UPA00566 PAJ_RS18325 56ffb795ed0cda5884fa1152b12e6871 355 Hamap MF_01002 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [wecF]. 1 355 61.345 T 14-09-2016 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 UniPathway: UPA00566 PAJ_RS14780 905a69601f835b45bc2323d8092a9063 687 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 141 507 1.3E-140 T 14-09-2016 IPR008766 Replication gene A protein GO:0006260 PAJ_RS14575 d495ae5804b6c826ccebb1dce2485678 110 PANTHER PTHR38040 2 95 5.6E-39 T 14-09-2016 PAJ_RS14575 d495ae5804b6c826ccebb1dce2485678 110 PANTHER PTHR38040:SF1 2 95 5.6E-39 T 14-09-2016 PAJ_RS14575 d495ae5804b6c826ccebb1dce2485678 110 Pfam PF04380 Membrane fusogenic activity 1 77 1.0E-28 T 14-09-2016 IPR007475 Membrane fusogenic activity PAJ_RS16290 21ecce464fffd108d6a686815c0d7093 95 Pfam PF10956 Protein of unknown function (DUF2756) 1 92 1.3E-20 T 14-09-2016 IPR020158 Protein of unknown function DUF2756 PAJ_RS06160 50c6f6e5f812ed7668f7d8f836ac17de 104 SUPERFAMILY SSF141488 26 100 6.67E-22 T 14-09-2016 IPR018660 C-type lysozyme, inhibitor PAJ_RS06160 50c6f6e5f812ed7668f7d8f836ac17de 104 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 31 93 2.2E-16 T 14-09-2016 IPR018660 C-type lysozyme, inhibitor PAJ_RS15235 70769b07339d6281f7b1fcda55554c0a 136 Pfam PF07007 Protein of unknown function (DUF1311) 32 122 2.8E-14 T 14-09-2016 IPR009739 Protein of unknown function DUF1311 PAJ_RS13815 0c2efddb43e9f268fc4c52d65fcbf95c 105 Pfam PF09686 Plasmid protein of unknown function (Plasmid_RAQPRD) 22 97 4.9E-28 T 14-09-2016 IPR019110 Uncharacterised protein family, RAQPRD PAJ_RS13815 0c2efddb43e9f268fc4c52d65fcbf95c 105 TIGRFAM TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family 10 98 6.1E-31 T 14-09-2016 IPR019110 Uncharacterised protein family, RAQPRD PAJ_RS02480 d2b0e6edf325ba30b73dae5436acea4e 160 Pfam PF07295 Zinc-ribbon containing domain 15 157 1.4E-47 T 14-09-2016 IPR009912 Zinc-ribbon containing domain PAJ_RS03970 48d0397a36fb9db96144fb74ca909047 74 Pfam PF10769 Protein of unknown function (DUF2594) 1 74 7.5E-39 T 14-09-2016 IPR019705 Protein of unknown function DUF2594 PAJ_RS13875 2bd9582c59eeaa75dd763f6b2bd68b0c 135 Pfam PF07511 Protein of unknown function (DUF1525) 19 132 6.4E-36 T 14-09-2016 IPR011090 Integrating conjugative element protein, PFL4709 PAJ_RS13875 2bd9582c59eeaa75dd763f6b2bd68b0c 135 TIGRFAM TIGR03757 conj_TIGR03757: integrating conjugative element protein, PFL_4709 family 19 131 1.8E-39 T 14-09-2016 IPR011090 Integrating conjugative element protein, PFL4709 PAJ_RS13960 e64017c2e9316a177bf024769507661f 235 Gene3D G3DSA:3.40.50.150 97 202 1.2E-8 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS13960 e64017c2e9316a177bf024769507661f 235 SUPERFAMILY SSF53335 85 203 1.16E-11 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PAJ_RS14105 e38db72fa1879420eaaaf8f41ace8a44 401 Pfam PF13729 F plasmid transfer operon, TraF, protein 51 319 4.2E-70 T 14-09-2016 IPR032811 Putative conjugal transfer protein TraF-related PAJ_RS01280 43dfe3c7fce54a57d8ff224b9ebf1b9f 479 Pfam PF04829 Pre-toxin domain with VENN motif 173 222 1.3E-17 T 14-09-2016 IPR006914 VENN motif-containing domain PAJ_RS01700 9697327946257cb936e11534966f1e76 192 Pfam PF03923 Uncharacterized lipoprotein 29 188 8.9E-53 T 14-09-2016 IPR005619 Uncharacterised protein family, YajG PAJ_RS16150 e7e66a5c087ff866944bea5a686615bf 82 Pfam PF11106 Exopolysaccharide production protein YjbE 1 78 9.3E-28 T 14-09-2016 IPR025858 Exopolysaccharide production protein YjbE PAJ_RS06505 8af5047a79271adfcca593ba933366a9 791 Pfam PF10139 Putative bacterial virulence factor 27 439 1.1E-71 T 14-09-2016 IPR017030 Virulence effector, SrfC PAJ_RS06505 8af5047a79271adfcca593ba933366a9 791 Pfam PF10139 Putative bacterial virulence factor 443 784 2.4E-63 T 14-09-2016 IPR017030 Virulence effector, SrfC PAJ_RS08960 c205b51cbb9ea689d80a55c136f44a34 74 Pfam PF10733 Protein of unknown function (DUF2525) 16 74 1.1E-10 T 14-09-2016 IPR019669 Uncharacterised bacterial stress protein YodD PAJ_RS03920 a5b1f8a4677f33cfd20585c4637e2a9d 76 Pfam PF13993 YccJ-like protein 9 76 1.3E-37 T 14-09-2016 IPR025600 YccJ-like protein PAJ_RS18060 438eeda3ac064a6cfd1def91ad4f4280 320 Pfam PF04393 Protein of unknown function (DUF535) 31 306 5.3E-92 T 14-09-2016 IPR007488 Protein of unknown function DUF535 PAJ_RS18060 438eeda3ac064a6cfd1def91ad4f4280 320 PANTHER PTHR38785 1 312 9.1E-89 T 14-09-2016 PAJ_RS07735 36f37273de6ab70ee812544ea8261fab 138 Pfam PF03692 Putative zinc- or iron-chelating domain 7 98 1.9E-11 T 14-09-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein PAJ_RS05315 641ad5257da2b0f2557d591258d20233 82 Pfam PF10820 Protein of unknown function (DUF2543) 1 81 1.5E-47 T 14-09-2016 IPR020251 Uncharacterised protein family, YmjA PAJ_RS05315 641ad5257da2b0f2557d591258d20233 82 ProDom PD059807 YMJA ECS1872 1 81 9.0E-26 T 14-09-2016 IPR020251 Uncharacterised protein family, YmjA PAJ_RS18010 dc11d941e61e8d2f94aa57edf4c77028 331 Pfam PF01757 Acyltransferase family 5 319 5.7E-27 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 PAJ_RS18010 dc11d941e61e8d2f94aa57edf4c77028 331 Hamap MF_01949 O-acetyltransferase WecH [wecH]. 1 331 38.87 T 14-09-2016 IPR032905 O-acetyltransferase WecH GO:0009246|GO:0016413 UniPathway: UPA00566 PAJ_RS17420 5fbd6e92e4950ca605c6879af61923c3 559 Pfam PF05170 AsmA family 6 543 4.3E-26 T 14-09-2016 IPR007844 AsmA PAJ_RS14755 d913b259384c51a8e48bf52fa14d37d9 144 TIGRFAM TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family 4 137 9.6E-30 T 14-09-2016 IPR020000 Bacteriophage P2, LysB PAJ_RS05305 16e7641e53637ba7bbe1a8b6828fd9d0 109 Gene3D G3DSA:2.60.120.10 11 94 1.3E-5 T 14-09-2016 IPR014710 RmlC-like jelly roll fold PAJ_RS05305 16e7641e53637ba7bbe1a8b6828fd9d0 109 SUPERFAMILY SSF51182 31 99 8.06E-7 T 14-09-2016 IPR011051 RmlC-like cupin domain PAJ_RS19630 cf75baebbf409a1ed426d69c2ef25755 116 Pfam PF13698 Domain of unknown function (DUF4156) 24 114 6.4E-31 T 14-09-2016 IPR025294 Protein of unknown function DUF4156 PAJ_RS17620 900cc17b79ad2f8d54a902b94f8b4da4 126 Pfam PF03899 ATP synthase I chain 14 108 2.4E-14 T 14-09-2016 IPR005598 ATP synthase protein I PAJ_RS08770 04336a86495ff283444d3f641e28e100 78 Gene3D G3DSA:1.10.1200.10 9 63 1.1E-5 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS08770 04336a86495ff283444d3f641e28e100 78 SUPERFAMILY SSF47336 20 72 1.87E-7 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain PAJ_RS03085 367f9fe67c348365a5659a6d50ca44fa 195 Pfam PF06930 Protein of unknown function (DUF1282) 7 177 4.0E-44 T 14-09-2016 IPR009698 Protein of unknown function DUF1282 PAJ_RS02310 2ba5d0ca8e67f615574479032b45ed77 241 Pfam PF06912 Protein of unknown function (DUF1275) 17 228 1.3E-32 T 14-09-2016 IPR010699 Protein of unknown function DUF1275 PAJ_RS08285 54549d61c0b34ce8fcca8ddd171a1b44 115 Pfam PF10709 Protein of unknown function (DUF2511) 26 113 8.1E-35 T 14-09-2016 IPR019648 Protein of unknown function DUF2511 PAJ_RS06275 b42e88c3a5a3b3e55e2eff43982b78a1 259 Pfam PF06551 Protein of unknown function (DUF1120) 60 139 2.4E-12 T 14-09-2016 IPR010546 Protein of unknown function DUF1120 PAJ_RS13685 969ff7ddf0704f5e44327570cb8f2c5f 220 Pfam PF10938 YfdX protein 44 194 5.4E-37 T 14-09-2016 IPR021236 Uncharacterised protein family YfdX PAJ_RS17230 bb65c37f87cdba82244259a9430cfaca 418 Pfam PF04932 O-Antigen ligase 196 351 6.8E-9 T 14-09-2016 IPR007016 O-antigen ligase-related PAJ_RS13985 14c40a2c244a018c9894172d8e381450 336 Pfam PF03756 A-factor biosynthesis hotdog domain 202 305 4.9E-12 T 14-09-2016 IPR005509 A-factor biosynthesis hotdog domain PAJ_RS13985 14c40a2c244a018c9894172d8e381450 336 Pfam PF03756 A-factor biosynthesis hotdog domain 15 144 1.3E-13 T 14-09-2016 IPR005509 A-factor biosynthesis hotdog domain PAJ_RS11530 b273a557901ee66f0765a960dd37621b 62 Pfam PF13980 Uncharacterised protein family (UPF0370) 1 62 5.7E-31 T 14-09-2016 IPR020910 Uncharacterised protein family UPF0370 PAJ_RS07090 de4444062a5a9a2865238958de406005 215 Pfam PF10099 Anti-sigma-K factor rskA 77 212 1.5E-22 T 14-09-2016 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 PAJ_RS09890 5613f08397b1968b053c9f64c5915eec 342 Pfam PF07507 WavE lipopolysaccharide synthesis 25 288 1.5E-26 T 14-09-2016 IPR011122 WavE lipopolysaccharide synthesis PAJ_RS06780 ead88f738d64eb5963a2cf98ca496608 269 Pfam PF15461 Beta-carotene 15,15'-dioxygenase 34 260 1.3E-19 T 14-09-2016 IPR022270 Beta-carotene 15,15'-monooxygenase, Brp/Blh family GO:0016702|GO:0055114 KEGG: 00830+1.13.11.63|MetaCyc: PWY-6857 PAJ_RS10215 a419a7b25588cc716371ba4de43f95f1 121 Pfam PF06803 Protein of unknown function (DUF1232) 34 68 9.9E-13 T 14-09-2016 IPR010652 Protein of unknown function DUF1232 UniPathway: UPA00143 PAJ_RS07410 7d56b0809c89ec3548f4155a3b1a6e86 877 Pfam PF11739 Dicarboxylate transport 662 863 4.5E-68 T 14-09-2016 IPR021730 Dicarboxylate transport PAJ_RS20765 e4c86b0917e89a06025168e8fa11a45e 149 Pfam PF15941 FidL-like putative membrane protein 65 147 1.7E-7 T 14-09-2016 IPR031854 Putative membrane protein FidL-like PAJ_RS08840 5bd6af029a332b009fbcf169dc7670f8 152 Pfam PF13987 YedD-like protein 24 126 2.7E-49 T 14-09-2016 IPR025596 YedD-like protein PAJ_RS20365 4910727e8d6e7cd06c6edc14bd2895f5 112 Pfam PF10908 Protein of unknown function (DUF2778) 15 88 2.6E-19 T 14-09-2016 IPR021225 Protein of unknown function DUF2778 PAJ_RS14145 c9ea0d1ac7b70fc01cf24f7839aef2c7 134 Pfam PF09345 Domain of unknown function (DUF1987) 19 117 7.2E-33 T 14-09-2016 IPR018530 Domain of unknown function DUF1987 PAJ_RS17935 eb3398a71bb06e913c6d6604ef626668 120 Pfam PF07119 Protein of unknown function (DUF1375) 16 77 3.1E-12 T 14-09-2016 IPR010780 Protein of unknown function DUF1375 PAJ_RS04225 465748fe57fa3bc75019e9723ea6dd83 425 Pfam PF13884 Chaperone of endosialidase 310 359 3.3E-13 T 14-09-2016 IPR030392 Intramolecular chaperone auto-processing domain PAJ_RS18850 210c08a2b7cdd7709c2b81a0019269c2 247 Pfam PF06251 Capsule biosynthesis GfcC 21 246 1.4E-65 T 14-09-2016 IPR010425 Domain of unknown function DUF1017 PAJ_RS00110 3e02bb823f7a92ae728961e2e9a57ce7 89 Pfam PF07395 Mig-14 1 84 5.9E-14 T 14-09-2016 IPR009977 Mig-14 PAJ_RS06005 e5abcae7895dbbd982e5297657eba76a 80 Pfam PF07869 Protein of unknown function (DUF1656) 21 71 1.3E-14 T 14-09-2016 IPR012451 Protein of unknown function DUF1656 PAJ_RS05715 cb458ea665083ea620a04686e143d2df 111 Pfam PF04355 SmpA / OmlA family 28 95 1.2E-13 T 14-09-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 PAJ_RS06745 bc487ecd9a8b5913b4445e42166abcf7 227 Pfam PF07670 Nucleoside recognition 87 169 2.7E-7 T 14-09-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 PAJ_RS04330 3cb4af3cab91c25ef89b0773c7404709 79 Pfam PF07119 Protein of unknown function (DUF1375) 51 73 1.0E-4 T 14-09-2016 IPR010780 Protein of unknown function DUF1375 PAJ_RS13170 6bd0a55138ba6970f09b17fb5c4b8179 134 Pfam PF10713 Protein of unknown function (DUF2509) 14 133 3.8E-28 T 14-09-2016 IPR019652 Protein of unknown function DUF2509 PAJ_RS20290 b1c91313f038da467a1dea2c8bb634b9 131 Pfam PF15599 Immunity protein 63 48 126 9.0E-13 T 14-09-2016 IPR028952 Immunity protein 63