locus-tag class description LK04_RS00010 PF06643 Protein of unknown function (DUF1158) LK04_RS00015 PF02659 Putative manganese efflux pump LK04_RS00035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS00040 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS00045 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS00045 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS00050 PF03576 Peptidase family S58 LK04_RS00060 PF01557 Fumarylacetoacetate (FAA) hydrolase family LK04_RS00070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS00070 PF00005 ABC transporter LK04_RS00075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS00075 PF00005 ABC transporter LK04_RS00080 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS00080 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS00085 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS00090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS00095 PF01244 Membrane dipeptidase (Peptidase family M19) LK04_RS00100 PF03466 LysR substrate binding domain LK04_RS00100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS00105 PF07690 Major Facilitator Superfamily LK04_RS00110 PF00392 Bacterial regulatory proteins, gntR family LK04_RS00110 PF07729 FCD domain LK04_RS00115 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS00115 PF00107 Zinc-binding dehydrogenase LK04_RS00120 PF01156 Inosine-uridine preferring nucleoside hydrolase LK04_RS00125 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LK04_RS00135 PF02230 Phospholipase/Carboxylesterase LK04_RS00140 PF13409 Glutathione S-transferase, N-terminal domain LK04_RS00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS00145 PF03466 LysR substrate binding domain LK04_RS00155 PF00664 ABC transporter transmembrane region LK04_RS00155 PF00005 ABC transporter LK04_RS00160 PF00583 Acetyltransferase (GNAT) family LK04_RS00165 PF13407 Periplasmic binding protein domain LK04_RS00170 PF07690 Major Facilitator Superfamily LK04_RS00175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LK04_RS00175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LK04_RS00180 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB LK04_RS00185 PF01381 Helix-turn-helix LK04_RS00190 PF11871 Domain of unknown function (DUF3391) LK04_RS00190 PF01966 HD domain LK04_RS00195 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) LK04_RS00200 PF03814 Potassium-transporting ATPase A subunit LK04_RS00210 PF02669 K+-transporting ATPase, c chain LK04_RS00215 PF13493 Domain of unknown function (DUF4118) LK04_RS00215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS00215 PF13492 GAF domain LK04_RS00215 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS00215 PF02702 Osmosensitive K+ channel His kinase sensor domain LK04_RS00220 PF03350 Uncharacterized protein family, UPF0114 LK04_RS00225 PF03466 LysR substrate binding domain LK04_RS00225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS00230 PF07690 Major Facilitator Superfamily LK04_RS00250 PF01062 Bestrophin, RFP-TM, chloride channel LK04_RS00255 PF00857 Isochorismatase family LK04_RS00260 PF03466 LysR substrate binding domain LK04_RS00260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS00270 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS00270 PF00107 Zinc-binding dehydrogenase LK04_RS00285 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LK04_RS00290 PF00106 short chain dehydrogenase LK04_RS00295 PF00356 Bacterial regulatory proteins, lacI family LK04_RS00300 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS00300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LK04_RS00305 PF12706 Beta-lactamase superfamily domain LK04_RS00315 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LK04_RS00320 PF01432 Peptidase family M3 LK04_RS00325 PF04445 Putative SAM-dependent methyltransferase LK04_RS00330 PF00582 Universal stress protein family LK04_RS00335 PF10625 Universal stress protein B (UspB) LK04_RS00340 PF01384 Phosphate transporter family LK04_RS00360 PF00857 Isochorismatase family LK04_RS00365 PF01965 DJ-1/PfpI family LK04_RS00365 PF12833 Helix-turn-helix domain LK04_RS00370 PF12833 Helix-turn-helix domain LK04_RS00375 PF00561 alpha/beta hydrolase fold LK04_RS00380 PF08447 PAS fold LK04_RS00380 PF05231 MASE1 LK04_RS00380 PF13426 PAS domain LK04_RS00380 PF00563 EAL domain LK04_RS00380 PF08448 PAS fold LK04_RS00380 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS00385 PF00490 Delta-aminolevulinic acid dehydratase LK04_RS00390 PF00083 Sugar (and other) transporter LK04_RS00390 PF08946 Osmosensory transporter coiled coil LK04_RS00400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LK04_RS00400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LK04_RS00405 PF00563 EAL domain LK04_RS00405 PF12792 CSS motif domain associated with EAL LK04_RS00410 PF00596 Class II Aldolase and Adducin N-terminal domain LK04_RS00415 PF09084 NMT1/THI5 like LK04_RS00420 PF01594 AI-2E family transporter LK04_RS00425 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS00435 PF00005 ABC transporter LK04_RS00435 PF17912 MalK OB fold domain LK04_RS00440 PF07690 Major Facilitator Superfamily LK04_RS00450 PF00171 Aldehyde dehydrogenase family LK04_RS00455 PF04962 KduI/IolB family LK04_RS00465 PF00294 pfkB family carbohydrate kinase LK04_RS00475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LK04_RS00475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LK04_RS00475 PF00205 Thiamine pyrophosphate enzyme, central domain LK04_RS00480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LK04_RS00480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS00485 PF01261 Xylose isomerase-like TIM barrel LK04_RS00490 PF01266 FAD dependent oxidoreductase LK04_RS00490 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LK04_RS00495 PF00581 Rhodanese-like domain LK04_RS00500 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LK04_RS00500 PF01694 Rhomboid family LK04_RS00505 PF00455 DeoR C terminal sensor domain LK04_RS00505 PF08220 DeoR-like helix-turn-helix domain LK04_RS00515 PF00343 Carbohydrate phosphorylase LK04_RS00520 PF02446 4-alpha-glucanotransferase LK04_RS00525 PF01521 Iron-sulphur cluster biosynthesis LK04_RS00525 PF01106 NifU-like domain LK04_RS00530 PF00156 Phosphoribosyl transferase domain LK04_RS00535 PF00561 alpha/beta hydrolase fold LK04_RS00545 PF00128 Alpha amylase, catalytic domain LK04_RS00550 PF17674 HHH domain LK04_RS00550 PF00575 S1 RNA binding domain LK04_RS00550 PF09371 Tex-like protein N-terminal domain LK04_RS00550 PF16921 Tex protein YqgF-like domain LK04_RS00555 PF03449 Transcription elongation factor, N-terminal LK04_RS00555 PF01272 Transcription elongation factor, GreA/GreB, C-term LK04_RS00565 PF00072 Response regulator receiver domain LK04_RS00565 PF00486 Transcriptional regulatory protein, C terminal LK04_RS00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS00570 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS00570 PF00672 HAMP domain LK04_RS00575 PF01293 Phosphoenolpyruvate carboxykinase LK04_RS00580 PF01430 Hsp33 protein LK04_RS00585 PF01479 S4 domain LK04_RS00590 PF13419 Haloacid dehalogenase-like hydrolase LK04_RS00595 PF07095 Intracellular growth attenuator protein IgaA LK04_RS00600 PF00293 NUDIX domain LK04_RS00605 PF00912 Transglycosylase LK04_RS00605 PF00905 Penicillin binding protein transpeptidase domain LK04_RS00605 PF17092 Penicillin-binding protein OB-like domain LK04_RS00630 PF00263 Bacterial type II and III secretion system protein LK04_RS00630 PF03958 Bacterial type II/III secretion system short domain LK04_RS00635 PF01202 Shikimate kinase LK04_RS00640 PF01761 3-dehydroquinate synthase LK04_RS00645 PF05036 Sporulation related domain LK04_RS00650 PF02086 D12 class N6 adenine-specific DNA methyltransferase LK04_RS00655 PF00834 Ribulose-phosphate 3 epimerase family LK04_RS00660 PF13419 Haloacid dehalogenase-like hydrolase LK04_RS00665 PF00579 tRNA synthetases class I (W and Y) LK04_RS00670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LK04_RS00670 PF14824 Sirohaem biosynthesis protein central LK04_RS00670 PF10414 Sirohaem synthase dimerisation region LK04_RS00675 PF01226 Formate/nitrite transporter LK04_RS00680 PF13806 Rieske-like [2Fe-2S] domain LK04_RS00685 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS00685 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LK04_RS00685 PF04324 BFD-like [2Fe-2S] binding domain LK04_RS00685 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LK04_RS00685 PF18267 Rubredoxin NAD+ reductase C-terminal domain LK04_RS00690 PF07969 Amidohydrolase family LK04_RS00695 PF07690 Major Facilitator Superfamily LK04_RS00700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LK04_RS00705 PF02661 Fic/DOC family LK04_RS00710 PF00117 Glutamine amidotransferase class-I LK04_RS00715 PF00202 Aminotransferase class-III LK04_RS00720 PF12805 FUSC-like inner membrane protein yccS LK04_RS00725 PF00027 Cyclic nucleotide-binding domain LK04_RS00725 PF13545 Crp-like helix-turn-helix domain LK04_RS00730 PF02566 OsmC-like protein LK04_RS00735 PF00485 Phosphoribulokinase / Uridine kinase family LK04_RS00740 PF06794 Uncharacterised protein family (UPF0270) LK04_RS00745 PF00561 alpha/beta hydrolase fold LK04_RS00755 PF00356 Bacterial regulatory proteins, lacI family LK04_RS00760 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LK04_RS00765 PF00005 ABC transporter LK04_RS00770 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS00775 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LK04_RS00780 PF00005 ABC transporter LK04_RS00780 PF12848 ABC transporter LK04_RS00785 PF02525 Flavodoxin-like fold LK04_RS00790 PF00999 Sodium/hydrogen exchanger family LK04_RS00790 PF02254 TrkA-N domain LK04_RS00795 PF09526 Probable metal-binding protein (DUF2387) LK04_RS00800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LK04_RS00805 PF04102 SlyX LK04_RS00810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LK04_RS00810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LK04_RS00815 PF13309 HTH domain LK04_RS00815 PF08348 YheO-like PAS domain LK04_RS00820 PF02635 DsrE/DsrF-like family LK04_RS00825 PF02635 DsrE/DsrF-like family LK04_RS00830 PF04077 DsrH like protein LK04_RS00835 PF00164 Ribosomal protein S12/S23 LK04_RS00840 PF00177 Ribosomal protein S7p/S5e LK04_RS00845 PF00679 Elongation factor G C-terminus LK04_RS00845 PF14492 Elongation Factor G, domain II LK04_RS00845 PF03764 Elongation factor G, domain IV LK04_RS00845 PF03144 Elongation factor Tu domain 2 LK04_RS00845 PF00009 Elongation factor Tu GTP binding domain LK04_RS00850 PF03143 Elongation factor Tu C-terminal domain LK04_RS00850 PF03144 Elongation factor Tu domain 2 LK04_RS00850 PF00009 Elongation factor Tu GTP binding domain LK04_RS00855 PF04324 BFD-like [2Fe-2S] binding domain LK04_RS00860 PF00210 Ferritin-like domain LK04_RS00865 PF00338 Ribosomal protein S10p/S20e LK04_RS00870 PF00297 Ribosomal protein L3 LK04_RS00875 PF00573 Ribosomal protein L4/L1 family LK04_RS00880 PF00276 Ribosomal protein L23 LK04_RS00885 PF00181 Ribosomal Proteins L2, RNA binding domain LK04_RS00885 PF03947 Ribosomal Proteins L2, C-terminal domain LK04_RS00890 PF00203 Ribosomal protein S19 LK04_RS00895 PF00237 Ribosomal protein L22p/L17e LK04_RS00900 PF07650 KH domain LK04_RS00900 PF00189 Ribosomal protein S3, C-terminal domain LK04_RS00905 PF00252 Ribosomal protein L16p/L10e LK04_RS00910 PF00831 Ribosomal L29 protein LK04_RS00915 PF00366 Ribosomal protein S17 LK04_RS00920 PF00238 Ribosomal protein L14p/L23e LK04_RS00925 PF00467 KOW motif LK04_RS00925 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LK04_RS00930 PF00673 ribosomal L5P family C-terminus LK04_RS00930 PF00281 Ribosomal protein L5 LK04_RS00935 PF00253 Ribosomal protein S14p/S29e LK04_RS00940 PF00410 Ribosomal protein S8 LK04_RS00945 PF00347 Ribosomal protein L6 LK04_RS00950 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LK04_RS00955 PF00333 Ribosomal protein S5, N-terminal domain LK04_RS00955 PF03719 Ribosomal protein S5, C-terminal domain LK04_RS00960 PF00327 Ribosomal protein L30p/L7e LK04_RS00965 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LK04_RS00970 PF00344 SecY translocase LK04_RS00975 PF00444 Ribosomal protein L36 LK04_RS00980 PF00416 Ribosomal protein S13/S18 LK04_RS00985 PF00411 Ribosomal protein S11 LK04_RS00990 PF00163 Ribosomal protein S4/S9 N-terminal domain LK04_RS00990 PF01479 S4 domain LK04_RS00995 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LK04_RS00995 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LK04_RS00995 PF01000 RNA polymerase Rpb3/RpoA insert domain LK04_RS01000 PF01196 Ribosomal protein L17 LK04_RS01005 PF09350 Domain of unknown function (DUF1992) LK04_RS01010 PF13411 MerR HTH family regulatory protein LK04_RS01015 PF03889 Alternative ribosome-rescue factor A LK04_RS01020 PF01741 Large-conductance mechanosensitive channel, MscL LK04_RS01025 PF02254 TrkA-N domain LK04_RS01025 PF02080 TrkA-C domain LK04_RS01030 PF01189 16S rRNA methyltransferase RsmB/F LK04_RS01030 PF01029 NusB family LK04_RS01035 PF00551 Formyl transferase LK04_RS01035 PF02911 Formyl transferase, C-terminal domain LK04_RS01040 PF01327 Polypeptide deformylase LK04_RS01045 PF02481 DNA recombination-mediator protein A LK04_RS01045 PF17782 DprA winged helix domain LK04_RS01050 PF04361 Protein of unknown function (DUF494) LK04_RS01055 PF01300 Telomere recombination LK04_RS01060 PF01488 Shikimate / quinate 5-dehydrogenase LK04_RS01060 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LK04_RS01060 PF08501 Shikimate dehydrogenase substrate binding domain LK04_RS01065 PF07369 Protein of unknown function (DUF1488) LK04_RS01070 PF00132 Bacterial transferase hexapeptide (six repeats) LK04_RS01110 PF00005 ABC transporter LK04_RS01115 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS01120 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS01125 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS01130 PF02954 Bacterial regulatory protein, Fis family LK04_RS01135 PF01207 Dihydrouridine synthase (Dus) LK04_RS01145 PF00474 Sodium:solute symporter family LK04_RS01150 PF06196 Protein of unknown function (DUF997) LK04_RS01155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LK04_RS01155 PF02785 Biotin carboxylase C-terminal domain LK04_RS01155 PF00289 Biotin carboxylase, N-terminal domain LK04_RS01160 PF00364 Biotin-requiring enzyme LK04_RS01165 PF01220 Dehydroquinase class II LK04_RS01170 PF01794 Ferric reductase like transmembrane component LK04_RS01175 PF00174 Oxidoreductase molybdopterin binding domain LK04_RS01180 PF00563 EAL domain LK04_RS01180 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS01180 PF17157 Gammaproteobacterial periplasmic sensor domain LK04_RS01190 PF04085 rod shape-determining protein MreC LK04_RS01195 PF04093 rod shape-determining protein MreD LK04_RS01200 PF02545 Maf-like protein LK04_RS01205 PF00575 S1 RNA binding domain LK04_RS01205 PF10150 Ribonuclease E/G family LK04_RS01210 PF13502 AsmA-like C-terminal region LK04_RS01210 PF13116 Protein of unknown function LK04_RS01215 PF01523 Putative modulator of DNA gyrase LK04_RS01220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS01220 PF03466 LysR substrate binding domain LK04_RS01225 PF07869 Protein of unknown function (DUF1656) LK04_RS01230 PF13533 Biotin-lipoyl like LK04_RS01235 PF04632 Fusaric acid resistance protein family LK04_RS01240 PF00171 Aldehyde dehydrogenase family LK04_RS01245 PF01337 Barstar (barnase inhibitor) LK04_RS01250 PF07338 Protein of unknown function (DUF1471) LK04_RS01260 PF07338 Protein of unknown function (DUF1471) LK04_RS01265 PF01316 Arginine repressor, DNA binding domain LK04_RS01265 PF02863 Arginine repressor, C-terminal domain LK04_RS01270 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LK04_RS01270 PF00056 lactate/malate dehydrogenase, NAD binding domain LK04_RS01275 PF00924 Mechanosensitive ion channel LK04_RS01275 PF12794 Mechanosensitive ion channel inner membrane domain 1 LK04_RS01275 PF12795 Mechanosensitive ion channel porin domain LK04_RS01280 PF02666 Phosphatidylserine decarboxylase LK04_RS01285 PF03193 RsgA GTPase LK04_RS01290 PF00929 Exonuclease LK04_RS01310 PF08331 Domain of unknown function (DUF1730) LK04_RS01315 PF03853 YjeF-related protein N-terminus LK04_RS01315 PF01256 Carbohydrate kinase LK04_RS01320 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LK04_RS01325 PF01520 N-acetylmuramoyl-L-alanine amidase LK04_RS01330 PF08676 MutL C terminal dimerisation domain LK04_RS01330 PF01119 DNA mismatch repair protein, C-terminal domain LK04_RS01340 PF17209 Hfq protein LK04_RS01345 PF01926 50S ribosome-binding GTPase LK04_RS01345 PF13167 GTP-binding GTPase N-terminal LK04_RS01345 PF16360 GTP-binding GTPase Middle Region LK04_RS01350 PF12221 Bacterial membrane protein N terminal LK04_RS01350 PF01145 SPFH domain / Band 7 family LK04_RS01355 PF01145 SPFH domain / Band 7 family LK04_RS01360 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LK04_RS01365 PF00709 Adenylosuccinate synthetase LK04_RS01370 PF02082 Transcriptional regulator LK04_RS01375 PF17876 Cold shock domain LK04_RS01375 PF08461 Ribonuclease R winged-helix domain LK04_RS01375 PF08206 Ribonuclease B OB domain LK04_RS01375 PF00773 RNB domain LK04_RS01375 PF00575 S1 RNA binding domain LK04_RS01380 PF00588 SpoU rRNA Methylase family LK04_RS01380 PF08032 RNA 2'-O ribose methyltransferase substrate binding LK04_RS01385 PF02770 Acyl-CoA dehydrogenase, middle domain LK04_RS01385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LK04_RS01385 PF18158 Adaptive response protein AidB N-terminal domain LK04_RS01395 PF02203 Tar ligand binding domain homologue LK04_RS01395 PF00672 HAMP domain LK04_RS01395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS01400 PF00326 Prolyl oligopeptidase family LK04_RS01410 PF01250 Ribosomal protein S6 LK04_RS01420 PF01084 Ribosomal protein S18 LK04_RS01425 PF03948 Ribosomal protein L9, C-terminal domain LK04_RS01425 PF01281 Ribosomal protein L9, N-terminal domain LK04_RS01430 PF04225 Opacity-associated protein A LysM-like domain LK04_RS01430 PF08525 Opacity-associated protein A N-terminal motif LK04_RS01435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LK04_RS01435 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LK04_RS01440 PF00149 Calcineurin-like phosphoesterase LK04_RS01440 PF02872 5'-nucleotidase, C-terminal domain LK04_RS01445 PF00459 Inositol monophosphatase family LK04_RS01450 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LK04_RS01455 PF06526 Protein of unknown function (DUF1107) LK04_RS01460 PF01595 Cyclin M transmembrane N-terminal domain LK04_RS01460 PF03471 Transporter associated domain LK04_RS01460 PF00571 CBS domain LK04_RS01465 PF07244 Surface antigen variable number repeat LK04_RS01465 PF01103 Surface antigen LK04_RS01465 PF17243 POTRA domain TamA domain 1 LK04_RS01470 PF04357 TamB, inner membrane protein subunit of TAM complex LK04_RS01475 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LK04_RS01480 PF00719 Inorganic pyrophosphatase LK04_RS01485 PF04284 Protein of unknown function (DUF441) LK04_RS01495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS01495 PF00672 HAMP domain LK04_RS01495 PF02203 Tar ligand binding domain homologue LK04_RS01505 PF13693 Winged helix-turn-helix DNA-binding LK04_RS01510 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LK04_RS01515 PF01225 Mur ligase family, catalytic domain LK04_RS01515 PF02875 Mur ligase family, glutamate ligase domain LK04_RS01515 PF08245 Mur ligase middle domain LK04_RS01520 PF04751 Protein of unknown function (DUF615) LK04_RS01525 PF01523 Putative modulator of DNA gyrase LK04_RS01530 PF07361 Cytochrome b562 LK04_RS01560 PF01979 Amidohydrolase family LK04_RS01565 PF03841 L-seryl-tRNA selenium transferase LK04_RS01570 PF07071 KDGP aldolase LK04_RS01575 PF05043 Mga helix-turn-helix domain LK04_RS01575 PF08279 HTH domain LK04_RS01575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LK04_RS01575 PF00874 PRD domain LK04_RS01580 PF03466 LysR substrate binding domain LK04_RS01580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS01585 PF02678 Pirin LK04_RS01585 PF17954 Quercetinase C-terminal cupin domain LK04_RS01590 PF04972 BON domain LK04_RS01595 PF13580 SIS domain LK04_RS01600 PF02021 Uncharacterised protein family UPF0102 LK04_RS01605 PF04348 LppC putative lipoprotein LK04_RS01610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LK04_RS01620 PF00893 Small Multidrug Resistance protein LK04_RS01625 PF00893 Small Multidrug Resistance protein LK04_RS01630 PF13409 Glutathione S-transferase, N-terminal domain LK04_RS01635 PF07681 DoxX LK04_RS01640 PF13997 YqjK-like protein LK04_RS01645 PF07332 Putative Actinobacterial Holin-X, holin superfamily III LK04_RS01650 PF05957 Bacterial protein of unknown function (DUF883) LK04_RS01655 PF06476 Protein of unknown function (DUF1090) LK04_RS01660 PF13721 SecD export protein N-terminal TM region LK04_RS01665 PF09335 SNARE associated Golgi protein LK04_RS01670 PF07729 FCD domain LK04_RS01670 PF00392 Bacterial regulatory proteins, gntR family LK04_RS01675 PF07690 Major Facilitator Superfamily LK04_RS01680 PF02614 Glucuronate isomerase LK04_RS01685 PF01232 Mannitol dehydrogenase Rossmann domain LK04_RS01685 PF08125 Mannitol dehydrogenase C-terminal domain LK04_RS01690 PF08666 SAF domain LK04_RS01690 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LK04_RS01695 PF00375 Sodium:dicarboxylate symporter family LK04_RS01700 PF03741 Integral membrane protein TerC family LK04_RS01705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS01710 PF00654 Voltage gated chloride channel LK04_RS01715 PF01863 Protein of unknown function DUF45 LK04_RS01720 PF05175 Methyltransferase small domain LK04_RS01725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LK04_RS01725 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS01730 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS01730 PF00107 Zinc-binding dehydrogenase LK04_RS01735 PF00106 short chain dehydrogenase LK04_RS01740 PF02447 GntP family permease LK04_RS01745 PF02578 Multi-copper polyphenol oxidoreductase laccase LK04_RS01750 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LK04_RS01755 PF00916 Sulfate permease family LK04_RS01755 PF01740 STAS domain LK04_RS01760 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS01765 PF07478 D-ala D-ala ligase C-terminus LK04_RS01765 PF01820 D-ala D-ala ligase N-terminus LK04_RS01770 PF02308 MgtC family LK04_RS01800 PF04411 PD-(D/E)XK nuclease superfamily LK04_RS01815 PF12419 SNF2 Helicase protein LK04_RS01815 PF00271 Helicase conserved C-terminal domain LK04_RS01815 PF00176 SNF2 family N-terminal domain LK04_RS01835 PF02384 N-6 DNA Methylase LK04_RS01840 PF01420 Type I restriction modification DNA specificity domain LK04_RS01850 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LK04_RS01850 PF18766 SWI2/SNF2 ATPase LK04_RS01850 PF11867 Domain of unknown function (DUF3387) LK04_RS01875 PF00106 short chain dehydrogenase LK04_RS01880 PF00440 Bacterial regulatory proteins, tetR family LK04_RS01885 PF03167 Uracil DNA glycosylase superfamily LK04_RS01895 PF04546 Sigma-70, non-essential region LK04_RS01895 PF00140 Sigma-70 factor, region 1.2 LK04_RS01895 PF04542 Sigma-70 region 2 LK04_RS01895 PF04539 Sigma-70 region 3 LK04_RS01895 PF03979 Sigma-70 factor, region 1.1 LK04_RS01895 PF04545 Sigma-70, region 4 LK04_RS01900 PF08275 DNA primase catalytic core, N-terminal domain LK04_RS01900 PF08278 DNA primase DnaG DnaB-binding LK04_RS01900 PF01807 CHC2 zinc finger LK04_RS01900 PF10410 DnaB-helicase binding domain of primase LK04_RS01905 PF01165 Ribosomal protein S21 LK04_RS01910 PF00814 Glycoprotease family LK04_RS01915 PF02660 Glycerol-3-phosphate acyltransferase LK04_RS01920 PF02152 Dihydroneopterin aldolase LK04_RS01925 PF02673 Bacitracin resistance protein BacA LK04_RS01930 PF01743 Poly A polymerase head domain LK04_RS01930 PF12627 Probable RNA and SrmB- binding site of polymerase A LK04_RS01930 PF01966 HD domain LK04_RS01935 PF08239 Bacterial SH3 domain LK04_RS01940 PF01928 CYTH domain LK04_RS01945 PF03710 Glutamate-ammonia ligase adenylyltransferase LK04_RS01945 PF08335 GlnD PII-uridylyltransferase LK04_RS01950 PF01467 Cytidylyltransferase-like LK04_RS01950 PF00294 pfkB family carbohydrate kinase LK04_RS01955 PF04380 Membrane fusogenic activity LK04_RS01960 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LK04_RS01965 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LK04_RS01970 PF03738 Glutathionylspermidine synthase preATP-grasp LK04_RS01975 PF06693 Protein of unknown function (DUF1190) LK04_RS01980 PF02321 Outer membrane efflux protein LK04_RS01985 PF00293 NUDIX domain LK04_RS01990 PF06853 Protein of unknown function (DUF1249) LK04_RS01995 PF00149 Calcineurin-like phosphoesterase LK04_RS02000 PF05728 Uncharacterised protein family (UPF0227) LK04_RS02005 PF00986 DNA gyrase B subunit, carboxyl terminus LK04_RS02005 PF00204 DNA gyrase B LK04_RS02005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS02005 PF01751 Toprim domain LK04_RS02010 PF03466 LysR substrate binding domain LK04_RS02010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS02015 PF07690 Major Facilitator Superfamily LK04_RS02020 PF01425 Amidase LK04_RS02025 PF03466 LysR substrate binding domain LK04_RS02025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS02035 PF02525 Flavodoxin-like fold LK04_RS02040 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS02045 PF01116 Fructose-bisphosphate aldolase class-II LK04_RS02050 PF01116 Fructose-bisphosphate aldolase class-II LK04_RS02055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LK04_RS02060 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LK04_RS02060 PF02378 Phosphotransferase system, EIIC LK04_RS02060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LK04_RS02070 PF05043 Mga helix-turn-helix domain LK04_RS02070 PF00874 PRD domain LK04_RS02070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LK04_RS02070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LK04_RS02070 PF08279 HTH domain LK04_RS02075 PF03989 DNA gyrase C-terminal domain, beta-propeller LK04_RS02075 PF00521 DNA gyrase/topoisomerase IV, subunit A LK04_RS02080 PF01553 Acyltransferase LK04_RS02085 PF07731 Multicopper oxidase LK04_RS02085 PF07732 Multicopper oxidase LK04_RS02090 PF00248 Aldo/keto reductase family LK04_RS02095 PF12833 Helix-turn-helix domain LK04_RS02095 PF06719 AraC-type transcriptional regulator N-terminus LK04_RS02100 PF09335 SNARE associated Golgi protein LK04_RS02105 PF01053 Cys/Met metabolism PLP-dependent enzyme LK04_RS02110 PF01618 MotA/TolQ/ExbB proton channel family LK04_RS02115 PF02472 Biopolymer transport protein ExbD/TolR LK04_RS02120 PF07690 Major Facilitator Superfamily LK04_RS02150 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS02150 PF00563 EAL domain LK04_RS02150 PF03707 Bacterial signalling protein N terminal repeat LK04_RS02155 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS02155 PF00563 EAL domain LK04_RS02155 PF03707 Bacterial signalling protein N terminal repeat LK04_RS02160 PF00392 Bacterial regulatory proteins, gntR family LK04_RS02160 PF00155 Aminotransferase class I and II LK04_RS02165 PF10777 Inner membrane protein YlaC LK04_RS02175 PF14403 Circularly permuted ATP-grasp type 2 LK04_RS02180 PF14403 Circularly permuted ATP-grasp type 2 LK04_RS02180 PF04168 A predicted alpha-helical domain with a conserved ER motif. LK04_RS02185 PF08379 Bacterial transglutaminase-like N-terminal region LK04_RS02185 PF01841 Transglutaminase-like superfamily LK04_RS02200 PF00005 ABC transporter LK04_RS02200 PF17912 MalK OB fold domain LK04_RS02205 PF13416 Bacterial extracellular solute-binding protein LK04_RS02210 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS02215 PF00753 Metallo-beta-lactamase superfamily LK04_RS02215 PF10996 Beta-Casp domain LK04_RS02215 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LK04_RS02220 PF13188 PAS domain LK04_RS02220 PF00563 EAL domain LK04_RS02220 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS02220 PF03707 Bacterial signalling protein N terminal repeat LK04_RS02230 PF00210 Ferritin-like domain LK04_RS02235 PF07687 Peptidase dimerisation domain LK04_RS02235 PF01546 Peptidase family M20/M25/M40 LK04_RS02240 PF00009 Elongation factor Tu GTP binding domain LK04_RS02240 PF16658 Class II release factor RF3, C-terminal domain LK04_RS02240 PF03144 Elongation factor Tu domain 2 LK04_RS02245 PF04972 BON domain LK04_RS02250 PF01734 Patatin-like phospholipase LK04_RS02255 PF01026 TatD related DNase LK04_RS02260 PF01791 DeoC/LacD family aldolase LK04_RS02265 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LK04_RS02265 PF00591 Glycosyl transferase family, a/b domain LK04_RS02265 PF02885 Glycosyl transferase family, helical bundle domain LK04_RS02270 PF01676 Metalloenzyme superfamily LK04_RS02275 PF01048 Phosphorylase superfamily LK04_RS02280 PF03717 Penicillin-binding Protein dimerisation domain LK04_RS02280 PF00905 Penicillin binding protein transpeptidase domain LK04_RS02285 PF17151 Periplasmic sensor domain LK04_RS02285 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS02305 PF08447 PAS fold LK04_RS02305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS02305 PF13426 PAS domain LK04_RS02315 PF00376 MerR family regulatory protein LK04_RS02315 PF09278 MerR, DNA binding LK04_RS02325 PF00042 Globin LK04_RS02325 PF00175 Oxidoreductase NAD-binding domain LK04_RS02325 PF00970 Oxidoreductase FAD-binding domain LK04_RS02330 PF02798 Glutathione S-transferase, N-terminal domain LK04_RS02335 PF02378 Phosphotransferase system, EIIC LK04_RS02340 PF11975 Family 4 glycosyl hydrolase C-terminal domain LK04_RS02340 PF02056 Family 4 glycosyl hydrolase LK04_RS02345 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LK04_RS02350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LK04_RS02360 PF00419 Fimbrial protein LK04_RS02375 PF02753 Pili assembly chaperone PapD, C-terminal domain LK04_RS02375 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LK04_RS02380 PF00577 Outer membrane usher protein LK04_RS02380 PF13953 PapC C-terminal domain LK04_RS02380 PF13954 PapC N-terminal domain LK04_RS02390 PF00419 Fimbrial protein LK04_RS02395 PF07690 Major Facilitator Superfamily LK04_RS02405 PF00180 Isocitrate/isopropylmalate dehydrogenase LK04_RS02410 PF07690 Major Facilitator Superfamily LK04_RS02415 PF03466 LysR substrate binding domain LK04_RS02415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS02420 PF00356 Bacterial regulatory proteins, lacI family LK04_RS02425 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LK04_RS02425 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS02435 PF13407 Periplasmic binding protein domain LK04_RS02440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS02440 PF03466 LysR substrate binding domain LK04_RS02445 PF13454 FAD-NAD(P)-binding LK04_RS02460 PF00005 ABC transporter LK04_RS02465 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS02470 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS02475 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS02485 PF13533 Biotin-lipoyl like LK04_RS02490 PF07690 Major Facilitator Superfamily LK04_RS02495 PF00109 Beta-ketoacyl synthase, N-terminal domain LK04_RS02495 PF02801 Beta-ketoacyl synthase, C-terminal domain LK04_RS02500 PF03786 D-mannonate dehydratase (UxuA) LK04_RS02505 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS02505 PF17152 Periplasmic sensor domain LK04_RS02510 PF07969 Amidohydrolase family LK04_RS02520 PF03466 LysR substrate binding domain LK04_RS02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS02525 PF07690 Major Facilitator Superfamily LK04_RS02530 PF00561 alpha/beta hydrolase fold LK04_RS02535 PF01204 Trehalase LK04_RS02540 PF05368 NmrA-like family LK04_RS02545 PF01638 HxlR-like helix-turn-helix LK04_RS02550 PF01738 Dienelactone hydrolase family LK04_RS02555 PF12833 Helix-turn-helix domain LK04_RS02555 PF06445 GyrI-like small molecule binding domain LK04_RS02565 PF03928 Haem-degrading LK04_RS02570 PF00106 short chain dehydrogenase LK04_RS02575 PF04954 Siderophore-interacting protein LK04_RS02575 PF08021 Siderophore-interacting FAD-binding domain LK04_RS02580 PF03551 Transcriptional regulator PadR-like family LK04_RS02585 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LK04_RS02590 PF02441 Flavoprotein LK04_RS02595 PF04474 Protein of unknown function (DUF554) LK04_RS02600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS02600 PF03466 LysR substrate binding domain LK04_RS02615 PF05171 Haemin-degrading HemS.ChuX domain LK04_RS02620 PF01497 Periplasmic binding protein LK04_RS02625 PF01032 FecCD transport family LK04_RS02630 PF00005 ABC transporter LK04_RS02635 PF00107 Zinc-binding dehydrogenase LK04_RS02635 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS02645 PF01276 Orn/Lys/Arg decarboxylase, major domain LK04_RS02645 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LK04_RS02645 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LK04_RS02650 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LK04_RS02650 PF01464 Transglycosylase SLT domain LK04_RS02655 PF04362 Bacterial Fe(2+) trafficking LK04_RS02660 PF10576 Iron-sulfur binding domain of endonuclease III LK04_RS02660 PF00633 Helix-hairpin-helix motif LK04_RS02660 PF00730 HhH-GPD superfamily base excision DNA repair protein LK04_RS02660 PF14815 NUDIX domain LK04_RS02665 PF02390 Putative methyltransferase LK04_RS02670 PF04320 Protein with unknown function (DUF469) LK04_RS02675 PF11101 Protein of unknown function (DUF2884) LK04_RS02680 PF03611 PTS system sugar-specific permease component LK04_RS02690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LK04_RS02695 PF00392 Bacterial regulatory proteins, gntR family LK04_RS02695 PF07702 UTRA domain LK04_RS02700 PF06969 HemN C-terminal domain LK04_RS02700 PF04055 Radical SAM superfamily LK04_RS02705 PF01725 Ham1 family LK04_RS02710 PF02325 YGGT family LK04_RS02715 PF01168 Alanine racemase, N-terminal domain LK04_RS02720 PF00437 Type II/IV secretion system protein LK04_RS02725 PF03652 Holliday junction resolvase LK04_RS02730 PF02622 Uncharacterized ACR, COG1678 LK04_RS02735 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LK04_RS02735 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LK04_RS02740 PF04452 RNA methyltransferase LK04_RS02745 PF04231 Endonuclease I LK04_RS02750 PF10263 SprT-like family LK04_RS02750 PF17283 SprT-like zinc ribbon domain LK04_RS02755 PF00083 Sugar (and other) transporter LK04_RS02760 PF00438 S-adenosylmethionine synthetase, N-terminal domain LK04_RS02760 PF02773 S-adenosylmethionine synthetase, C-terminal domain LK04_RS02760 PF02772 S-adenosylmethionine synthetase, central domain LK04_RS02765 PF17810 Arginine decarboxylase helical bundle domain LK04_RS02765 PF17944 Arginine decarboxylase C-terminal helical extension LK04_RS02765 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LK04_RS02770 PF00563 EAL domain LK04_RS02770 PF13185 GAF domain LK04_RS02770 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS02790 PF03412 Peptidase C39 family LK04_RS02790 PF00005 ABC transporter LK04_RS02790 PF00664 ABC transporter transmembrane region LK04_RS02800 PF01380 SIS domain LK04_RS02800 PF00571 CBS domain LK04_RS02810 PF02563 Polysaccharide biosynthesis/export protein LK04_RS02810 PF10531 SLBB domain LK04_RS02815 PF02348 Cytidylyltransferase LK04_RS02820 PF05159 Capsule polysaccharide biosynthesis protein LK04_RS02825 PF05159 Capsule polysaccharide biosynthesis protein LK04_RS02850 PF01061 ABC-2 type transporter LK04_RS02855 PF00491 Arginase family LK04_RS02860 PF06078 Bacterial protein of unknown function (DUF937) LK04_RS02865 PF01435 Peptidase family M48 LK04_RS02870 PF00456 Transketolase, thiamine diphosphate binding domain LK04_RS02870 PF02780 Transketolase, C-terminal domain LK04_RS02870 PF02779 Transketolase, pyrimidine binding domain LK04_RS02875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LK04_RS02875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LK04_RS02880 PF00162 Phosphoglycerate kinase LK04_RS02885 PF01116 Fructose-bisphosphate aldolase class-II LK04_RS02890 PF05552 Conserved TM helix LK04_RS02890 PF00924 Mechanosensitive ion channel LK04_RS02895 PF01810 LysE type translocator LK04_RS02910 PF07690 Major Facilitator Superfamily LK04_RS02915 PF04402 Protein of unknown function (DUF541) LK04_RS02920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS02920 PF03466 LysR substrate binding domain LK04_RS02925 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LK04_RS02930 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LK04_RS02930 PF01842 ACT domain LK04_RS02930 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LK04_RS02935 PF01812 5-formyltetrahydrofolate cyclo-ligase family LK04_RS02945 PF05164 Cell division protein ZapA LK04_RS02950 PF03695 Uncharacterised protein family (UPF0149) LK04_RS02955 PF00557 Metallopeptidase family M24 LK04_RS02955 PF05195 Aminopeptidase P, N-terminal domain LK04_RS02960 PF01494 FAD binding domain LK04_RS02965 PF01494 FAD binding domain LK04_RS02970 PF01571 Aminomethyltransferase folate-binding domain LK04_RS02970 PF08669 Glycine cleavage T-protein C-terminal barrel domain LK04_RS02975 PF01597 Glycine cleavage H-protein LK04_RS02980 PF02347 Glycine cleavage system P-protein LK04_RS02990 PF00232 Glycosyl hydrolase family 1 LK04_RS02995 PF01418 Helix-turn-helix domain, rpiR family LK04_RS02995 PF01380 SIS domain LK04_RS03000 PF03006 Haemolysin-III related LK04_RS03005 PF01571 Aminomethyltransferase folate-binding domain LK04_RS03015 PF03937 Flavinator of succinate dehydrogenase LK04_RS03025 PF00258 Flavodoxin LK04_RS03030 PF02899 Phage integrase, N-terminal SAM-like domain LK04_RS03030 PF00589 Phage integrase family LK04_RS03035 PF13098 Thioredoxin-like domain LK04_RS03035 PF10411 Disulfide bond isomerase protein N-terminus LK04_RS03040 PF17768 RecJ OB domain LK04_RS03040 PF01368 DHH family LK04_RS03040 PF02272 DHHA1 domain LK04_RS03050 PF01336 OB-fold nucleic acid binding domain LK04_RS03050 PF00152 tRNA synthetases class II (D, K and N) LK04_RS03060 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS03075 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS03080 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS03095 PF07690 Major Facilitator Superfamily LK04_RS03100 PF03466 LysR substrate binding domain LK04_RS03100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS03105 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LK04_RS03105 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LK04_RS03115 PF00356 Bacterial regulatory proteins, lacI family LK04_RS03120 PF00384 Molybdopterin oxidoreductase LK04_RS03120 PF01568 Molydopterin dinucleotide binding domain LK04_RS03125 PF00905 Penicillin binding protein transpeptidase domain LK04_RS03125 PF03717 Penicillin-binding Protein dimerisation domain LK04_RS03135 PF00529 HlyD membrane-fusion protein of T1SS LK04_RS03135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LK04_RS03140 PF00873 AcrB/AcrD/AcrF family LK04_RS03145 PF02321 Outer membrane efflux protein LK04_RS03150 PF13533 Biotin-lipoyl like LK04_RS03155 PF00873 AcrB/AcrD/AcrF family LK04_RS03160 PF00873 AcrB/AcrD/AcrF family LK04_RS03165 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LK04_RS03165 PF02321 Outer membrane efflux protein LK04_RS03170 PF00501 AMP-binding enzyme LK04_RS03170 PF01553 Acyltransferase LK04_RS03175 PF07690 Major Facilitator Superfamily LK04_RS03180 PF00248 Aldo/keto reductase family LK04_RS03185 PF06004 Bacterial protein of unknown function (DUF903) LK04_RS03190 PF03741 Integral membrane protein TerC family LK04_RS03195 PF02976 DNA mismatch repair enzyme MutH LK04_RS03200 PF00293 NUDIX domain LK04_RS03205 PF05524 PEP-utilising enzyme, N-terminal LK04_RS03205 PF00391 PEP-utilising enzyme, mobile domain LK04_RS03205 PF02896 PEP-utilising enzyme, TIM barrel domain LK04_RS03205 PF01590 GAF domain LK04_RS03210 PF01790 Prolipoprotein diacylglyceryl transferase LK04_RS03215 PF00303 Thymidylate synthase LK04_RS03225 PF07963 Prokaryotic N-terminal methylation motif LK04_RS03240 PF17946 RecC C-terminal domain LK04_RS03245 PF16187 Middle or third domain of peptidase_M16 LK04_RS03245 PF05193 Peptidase M16 inactive domain LK04_RS03245 PF00675 Insulinase (Peptidase family M16) LK04_RS03250 PF12705 PD-(D/E)XK nuclease superfamily LK04_RS03250 PF00580 UvrD/REP helicase N-terminal domain LK04_RS03250 PF13361 UvrD-like helicase C-terminal domain LK04_RS03255 PF13538 UvrD-like helicase C-terminal domain LK04_RS03260 PF00696 Amino acid kinase family LK04_RS03260 PF00583 Acetyltransferase (GNAT) family LK04_RS03265 PF11741 AMIN domain LK04_RS03265 PF01520 N-acetylmuramoyl-L-alanine amidase LK04_RS03285 PF03562 MltA specific insert domain LK04_RS03285 PF06725 3D domain LK04_RS03290 PF00899 ThiF family LK04_RS03295 PF02657 Fe-S metabolism associated domain LK04_RS03300 PF00266 Aminotransferase class-V LK04_RS03305 PF06004 Bacterial protein of unknown function (DUF903) LK04_RS03310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS03310 PF03466 LysR substrate binding domain LK04_RS03315 PF04241 Protein of unknown function (DUF423) LK04_RS03320 PF01728 FtsJ-like methyltransferase LK04_RS03320 PF18125 RlmM ferredoxin-like domain LK04_RS03325 PF01367 5'-3' exonuclease, C-terminal SAM fold LK04_RS03325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LK04_RS03330 PF03641 Possible lysine decarboxylase LK04_RS03330 PF11892 Domain of unknown function (DUF3412) LK04_RS03330 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LK04_RS03335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LK04_RS03335 PF14489 QueF-like protein LK04_RS03340 PF07348 Syd protein (SUKH-2) LK04_RS03350 PF04287 tRNA pseudouridine synthase C LK04_RS03355 PF00849 RNA pseudouridylate synthase LK04_RS03360 PF00258 Flavodoxin LK04_RS03365 PF08666 SAF domain LK04_RS03365 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LK04_RS03370 PF07690 Major Facilitator Superfamily LK04_RS03375 PF13378 Enolase C-terminal domain-like LK04_RS03375 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LK04_RS03380 PF13378 Enolase C-terminal domain-like LK04_RS03385 PF03328 HpcH/HpaI aldolase/citrate lyase family LK04_RS03390 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LK04_RS03390 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LK04_RS03395 PF02595 Glycerate kinase family LK04_RS03400 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LK04_RS03400 PF00672 HAMP domain LK04_RS03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS03400 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS03400 PF01627 Hpt domain LK04_RS03400 PF00072 Response regulator receiver domain LK04_RS03405 PF01938 TRAM domain LK04_RS03405 PF05958 tRNA (Uracil-5-)-methyltransferase LK04_RS03410 PF02824 TGS domain LK04_RS03410 PF04607 Region found in RelA / SpoT proteins LK04_RS03410 PF13291 ACT domain LK04_RS03415 PF03819 MazG nucleotide pyrophosphohydrolase domain LK04_RS03420 PF00117 Glutamine amidotransferase class-I LK04_RS03420 PF06418 CTP synthase N-terminus LK04_RS03425 PF03952 Enolase, N-terminal domain LK04_RS03425 PF00113 Enolase, C-terminal TIM barrel domain LK04_RS03430 PF04055 Radical SAM superfamily LK04_RS03435 PF00719 Inorganic pyrophosphatase LK04_RS03440 PF01242 6-pyruvoyl tetrahydropterin synthase LK04_RS03445 PF00258 Flavodoxin LK04_RS03445 PF00667 FAD binding domain LK04_RS03445 PF00175 Oxidoreductase NAD-binding domain LK04_RS03450 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LK04_RS03450 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LK04_RS03455 PF01507 Phosphoadenosine phosphosulfate reductase family LK04_RS03465 PF04389 Peptidase family M28 LK04_RS03470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LK04_RS03470 PF14824 Sirohaem biosynthesis protein central LK04_RS03470 PF10414 Sirohaem synthase dimerisation region LK04_RS03475 PF01507 Phosphoadenosine phosphosulfate reductase family LK04_RS03480 PF00009 Elongation factor Tu GTP binding domain LK04_RS03490 PF12084 Protein of unknown function (DUF3561) LK04_RS03495 PF04977 Septum formation initiator LK04_RS03500 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LK04_RS03505 PF02542 YgbB family LK04_RS03510 PF01142 tRNA pseudouridine synthase D (TruD) LK04_RS03515 PF01975 Survival protein SurE LK04_RS03525 PF01551 Peptidase family M23 LK04_RS03525 PF01476 LysM domain LK04_RS03530 PF00140 Sigma-70 factor, region 1.2 LK04_RS03530 PF04542 Sigma-70 region 2 LK04_RS03530 PF04539 Sigma-70 region 3 LK04_RS03530 PF04545 Sigma-70, region 4 LK04_RS03535 PF05192 MutS domain III LK04_RS03535 PF01624 MutS domain I LK04_RS03535 PF00488 MutS domain V LK04_RS03535 PF05188 MutS domain II LK04_RS03535 PF05190 MutS family domain IV LK04_RS03545 PF13406 Transglycosylase SLT domain LK04_RS03550 PF08274 PhnA Zinc-Ribbon LK04_RS03550 PF03831 PhnA domain LK04_RS03555 PF00701 Dihydrodipicolinate synthetase family LK04_RS03560 PF13847 Methyltransferase domain LK04_RS03565 PF02464 Competence-damaged protein LK04_RS03570 PF00154 recA bacterial DNA recombination protein LK04_RS03575 PF02631 RecX family LK04_RS03580 PF02272 DHHA1 domain LK04_RS03580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LK04_RS03580 PF01411 tRNA synthetases class II (A) LK04_RS03585 PF02599 Global regulator protein family LK04_RS03615 PF13419 Haloacid dehalogenase-like hydrolase LK04_RS03620 PF09335 SNARE associated Golgi protein LK04_RS03625 PF04262 Glutamate-cysteine ligase LK04_RS03630 PF02664 S-Ribosylhomocysteinase (LuxS) LK04_RS03635 PF01595 Cyclin M transmembrane N-terminal domain LK04_RS03635 PF03471 Transporter associated domain LK04_RS03635 PF00571 CBS domain LK04_RS03640 PF01578 Cytochrome C assembly protein LK04_RS03645 PF02978 Signal peptide binding domain LK04_RS03645 PF00448 SRP54-type protein, GTPase domain LK04_RS03645 PF02881 SRP54-type protein, helical bundle domain LK04_RS03650 PF00886 Ribosomal protein S16 LK04_RS03655 PF05239 PRC-barrel domain LK04_RS03655 PF01782 RimM N-terminal domain LK04_RS03660 PF01746 tRNA (Guanine-1)-methyltransferase LK04_RS03665 PF01245 Ribosomal protein L19 LK04_RS03675 PF00793 DAHP synthetase I family LK04_RS03680 PF02153 Prephenate dehydrogenase LK04_RS03680 PF01817 Chorismate mutase type II LK04_RS03685 PF01817 Chorismate mutase type II LK04_RS03685 PF00800 Prephenate dehydratase LK04_RS03690 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LK04_RS03695 PF13525 Outer membrane lipoprotein LK04_RS03700 PF01479 S4 domain LK04_RS03700 PF00849 RNA pseudouridylate synthase LK04_RS03705 PF02578 Multi-copper polyphenol oxidoreductase laccase LK04_RS03710 PF07724 AAA domain (Cdc48 subfamily) LK04_RS03710 PF00004 ATPase family associated with various cellular activities (AAA) LK04_RS03710 PF10431 C-terminal, D2-small domain, of ClpB protein LK04_RS03710 PF02861 Clp amino terminal domain, pathogenicity island component LK04_RS03710 PF17871 AAA lid domain LK04_RS03740 PF00083 Sugar (and other) transporter LK04_RS03745 PF10043 Predicted periplasmic lipoprotein (DUF2279) LK04_RS03750 PF13091 PLD-like domain LK04_RS03755 PF13607 Succinyl-CoA ligase like flavodoxin domain LK04_RS03755 PF00583 Acetyltransferase (GNAT) family LK04_RS03755 PF13380 CoA binding domain LK04_RS03760 PF03942 DTW domain LK04_RS03765 PF00085 Thioredoxin LK04_RS03770 PF00588 SpoU rRNA Methylase family LK04_RS03770 PF08032 RNA 2'-O ribose methyltransferase substrate binding LK04_RS03775 PF07690 Major Facilitator Superfamily LK04_RS03780 PF00529 HlyD membrane-fusion protein of T1SS LK04_RS03780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LK04_RS03785 PF01047 MarR family LK04_RS03795 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LK04_RS03800 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS03805 PF00005 ABC transporter LK04_RS03805 PF00571 CBS domain LK04_RS03810 PF00268 Ribonucleotide reductase, small chain LK04_RS03815 PF02867 Ribonucleotide reductase, barrel domain LK04_RS03815 PF00317 Ribonucleotide reductase, all-alpha domain LK04_RS03815 PF08343 Ribonucleotide reductase N-terminal LK04_RS03820 PF07972 NrdI Flavodoxin like LK04_RS03825 PF00462 Glutaredoxin LK04_RS03830 PF05957 Bacterial protein of unknown function (DUF883) LK04_RS03835 PF09400 Protein of unknown function (DUF2002) LK04_RS03840 PF00324 Amino acid permease LK04_RS03845 PF02574 Homocysteine S-methyltransferase LK04_RS03860 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS03865 PF00005 ABC transporter LK04_RS03870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS03870 PF00005 ABC transporter LK04_RS03875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS03875 PF00005 ABC transporter LK04_RS03880 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS03880 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS03885 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS03890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS03895 PF00689 Cation transporting ATPase, C-terminus LK04_RS03895 PF00690 Cation transporter/ATPase, N-terminus LK04_RS03905 PF02677 Epoxyqueuosine reductase QueH LK04_RS03940 PF01668 SmpB protein LK04_RS03945 PF03364 Polyketide cyclase / dehydrase and lipid transport LK04_RS03950 PF03658 RnfH family Ubiquitin LK04_RS03955 PF04355 SmpA / OmlA family LK04_RS03960 PF02463 RecF/RecN/SMC N terminal domain LK04_RS03965 PF01513 ATP-NAD kinase LK04_RS03970 PF01025 GrpE LK04_RS03975 PF03167 Uracil DNA glycosylase superfamily LK04_RS03980 PF01228 Glycine radical LK04_RS03985 PF00271 Helicase conserved C-terminal domain LK04_RS03985 PF00270 DEAD/DEAH box helicase LK04_RS03990 PF05175 Methyltransferase small domain LK04_RS03995 PF00890 FAD binding domain LK04_RS03995 PF02910 Fumarate reductase flavoprotein C-term LK04_RS04000 PF04542 Sigma-70 region 2 LK04_RS04000 PF08281 Sigma-70, region 4 LK04_RS04005 PF03873 Anti sigma-E protein RseA, C-terminal domain LK04_RS04005 PF03872 Anti sigma-E protein RseA, N-terminal domain LK04_RS04010 PF17188 MucB/RseB C-terminal domain LK04_RS04010 PF03888 MucB/RseB N-terminal domain LK04_RS04020 PF06421 GTP-binding protein LepA C-terminus LK04_RS04020 PF03144 Elongation factor Tu domain 2 LK04_RS04020 PF00009 Elongation factor Tu GTP binding domain LK04_RS04020 PF00679 Elongation factor G C-terminus LK04_RS04025 PF10502 Signal peptidase, peptidase S26 LK04_RS04030 PF14622 Ribonuclease-III-like LK04_RS04030 PF00035 Double-stranded RNA binding motif LK04_RS04035 PF07650 KH domain LK04_RS04035 PF01926 50S ribosome-binding GTPase LK04_RS04040 PF02565 Recombination protein O C terminal LK04_RS04040 PF11967 Recombination protein O N terminal LK04_RS04045 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LK04_RS04050 PF01648 4'-phosphopantetheinyl transferase superfamily LK04_RS04055 PF12838 4Fe-4S dicluster domain LK04_RS04060 PF01380 SIS domain LK04_RS04060 PF01418 Helix-turn-helix domain, rpiR family LK04_RS04070 PF14437 MafB19-like deaminase LK04_RS04075 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS04075 PF01464 Transglycosylase SLT domain LK04_RS04080 PF02769 AIR synthase related protein, C-terminal domain LK04_RS04080 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LK04_RS04080 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LK04_RS04085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS04085 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS04090 PF13942 YfhG lipoprotein LK04_RS04095 PF00158 Sigma-54 interaction domain LK04_RS04095 PF00072 Response regulator receiver domain LK04_RS04100 PF00543 Nitrogen regulatory protein P-II LK04_RS04105 PF00175 Oxidoreductase NAD-binding domain LK04_RS04105 PF00042 Globin LK04_RS04105 PF00970 Oxidoreductase FAD-binding domain LK04_RS04110 PF00464 Serine hydroxymethyltransferase LK04_RS04115 PF12832 MFS_1 like family LK04_RS04120 PF00874 PRD domain LK04_RS04130 PF03824 High-affinity nickel-transport protein LK04_RS04135 PF00459 Inositol monophosphatase family LK04_RS04140 PF00588 SpoU rRNA Methylase family LK04_RS04145 PF02082 Transcriptional regulator LK04_RS04150 PF00266 Aminotransferase class-V LK04_RS04155 PF00883 Cytosol aminopeptidase family, catalytic domain LK04_RS04155 PF12404 Peptidase LK04_RS04160 PF07179 SseB protein N-terminal domain LK04_RS04160 PF14581 SseB protein C-terminal domain LK04_RS04165 PF00581 Rhodanese-like domain LK04_RS04170 PF07678 A-macroglobulin TED domain LK04_RS04170 PF00207 Alpha-2-macroglobulin family LK04_RS04170 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LK04_RS04170 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LK04_RS04170 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LK04_RS04170 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LK04_RS04170 PF17962 Bacterial macroglobulin domain 6 LK04_RS04170 PF07703 Alpha-2-macroglobulin bait region domain LK04_RS04170 PF01835 MG2 domain LK04_RS04175 PF06832 Penicillin-Binding Protein C-terminus Family LK04_RS04175 PF00912 Transglycosylase LK04_RS04175 PF00905 Penicillin binding protein transpeptidase domain LK04_RS04180 PF00334 Nucleoside diphosphate kinase LK04_RS04185 PF04055 Radical SAM superfamily LK04_RS04195 PF13464 Domain of unknown function (DUF4115) LK04_RS04200 PF04551 GcpE protein LK04_RS04205 PF03129 Anticodon binding domain LK04_RS04205 PF13393 Histidyl-tRNA synthetase LK04_RS04210 PF09976 Tetratricopeptide repeat-like domain LK04_RS04215 PF13360 PQQ-like domain LK04_RS04220 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LK04_RS04220 PF01926 50S ribosome-binding GTPase LK04_RS04225 PF13360 PQQ-like domain LK04_RS04225 PF01011 PQQ enzyme repeat LK04_RS04240 PF16485 Protealysin propeptide LK04_RS04240 PF01447 Thermolysin metallopeptidase, catalytic domain LK04_RS04240 PF02868 Thermolysin metallopeptidase, alpha-helical domain LK04_RS04245 PF13742 OB-fold nucleic acid binding domain LK04_RS04245 PF02601 Exonuclease VII, large subunit LK04_RS04250 PF00571 CBS domain LK04_RS04250 PF00478 IMP dehydrogenase / GMP reductase domain LK04_RS04255 PF00117 Glutamine amidotransferase class-I LK04_RS04255 PF02540 NAD synthase LK04_RS04255 PF00958 GMP synthase C terminal domain LK04_RS04265 PF05973 Phage derived protein Gp49-like (DUF891) LK04_RS04285 PF03448 MgtE intracellular N domain LK04_RS04285 PF01769 Divalent cation transporter LK04_RS04285 PF00571 CBS domain LK04_RS04295 PF03848 Tellurite resistance protein TehB LK04_RS04300 PF02541 Ppx/GppA phosphatase family LK04_RS04305 PF02503 Polyphosphate kinase middle domain LK04_RS04305 PF13089 Polyphosphate kinase N-terminal domain LK04_RS04305 PF17941 Polyphosphate kinase C-terminal domain 1 LK04_RS04305 PF13090 Polyphosphate kinase C-terminal domain 2 LK04_RS04310 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS04315 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS04320 PF00005 ABC transporter LK04_RS04325 PF00551 Formyl transferase LK04_RS04330 PF02769 AIR synthase related protein, C-terminal domain LK04_RS04330 PF00586 AIR synthase related protein, N-terminal domain LK04_RS04340 PF00860 Permease family LK04_RS04345 PF00308 Bacterial dnaA protein LK04_RS04350 PF03960 ArsC family LK04_RS04355 PF01435 Peptidase family M48 LK04_RS04370 PF00356 Bacterial regulatory proteins, lacI family LK04_RS04385 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS04390 PF08402 TOBE domain LK04_RS04390 PF00005 ABC transporter LK04_RS04395 PF00149 Calcineurin-like phosphoesterase LK04_RS04400 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS04405 PF01594 AI-2E family transporter LK04_RS04410 PF00578 AhpC/TSA family LK04_RS04415 PF01842 ACT domain LK04_RS04420 PF00701 Dihydrodipicolinate synthetase family LK04_RS04425 PF06804 NlpB/DapX lipoprotein LK04_RS04430 PF01259 SAICAR synthetase LK04_RS04435 PF04228 Putative neutral zinc metallopeptidase LK04_RS04440 PF05127 Helicase LK04_RS04440 PF08351 Domain of unknown function (DUF1726) LK04_RS04440 PF17176 tRNA-binding domain LK04_RS04440 PF13718 GNAT acetyltransferase 2 LK04_RS04445 PF02230 Phospholipase/Carboxylesterase LK04_RS04450 PF13980 Uncharacterised protein family (UPF0370) LK04_RS04455 PF07687 Peptidase dimerisation domain LK04_RS04455 PF01546 Peptidase family M20/M25/M40 LK04_RS04460 PF03960 ArsC family LK04_RS04470 PF00873 AcrB/AcrD/AcrF family LK04_RS04475 PF00196 Bacterial regulatory proteins, luxR family LK04_RS04475 PF00072 Response regulator receiver domain LK04_RS04480 PF07730 Histidine kinase LK04_RS04480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS04480 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LK04_RS04480 PF00672 HAMP domain LK04_RS04485 PF07338 Protein of unknown function (DUF1471) LK04_RS04490 PF00324 Amino acid permease LK04_RS04495 PF03927 NapD protein LK04_RS04500 PF00384 Molybdopterin oxidoreductase LK04_RS04500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LK04_RS04500 PF01568 Molydopterin dinucleotide binding domain LK04_RS04500 PF10518 TAT (twin-arginine translocation) pathway signal sequence LK04_RS04505 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LK04_RS04510 PF03264 NapC/NirT cytochrome c family, N-terminal region LK04_RS04515 PF00293 NUDIX domain LK04_RS04520 PF00294 pfkB family carbohydrate kinase LK04_RS04525 PF00480 ROK family LK04_RS04530 PF00834 Ribulose-phosphate 3 epimerase family LK04_RS04535 PF02653 Branched-chain amino acid transport system / permease component LK04_RS04540 PF02653 Branched-chain amino acid transport system / permease component LK04_RS04545 PF00005 ABC transporter LK04_RS04555 PF08220 DeoR-like helix-turn-helix domain LK04_RS04555 PF00455 DeoR C terminal sensor domain LK04_RS04560 PF06674 Protein of unknown function (DUF1176) LK04_RS04565 PF00144 Beta-lactamase LK04_RS04570 PF02780 Transketolase, C-terminal domain LK04_RS04570 PF00456 Transketolase, thiamine diphosphate binding domain LK04_RS04570 PF02779 Transketolase, pyrimidine binding domain LK04_RS04575 PF00923 Transaldolase/Fructose-6-phosphate aldolase LK04_RS04580 PF01515 Phosphate acetyl/butaryl transferase LK04_RS04580 PF03949 Malic enzyme, NAD binding domain LK04_RS04580 PF00390 Malic enzyme, N-terminal domain LK04_RS04585 PF01218 Coproporphyrinogen III oxidase LK04_RS04590 PF01520 N-acetylmuramoyl-L-alanine amidase LK04_RS04595 PF00583 Acetyltransferase (GNAT) family LK04_RS04600 PF11143 Protein of unknown function (DUF2919) LK04_RS04605 PF06572 Protein of unknown function (DUF1131) LK04_RS04610 PF04261 Dyp-type peroxidase family LK04_RS04620 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS04625 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS04630 PF00005 ABC transporter LK04_RS04635 PF00291 Pyridoxal-phosphate dependent enzyme LK04_RS04640 PF00486 Transcriptional regulatory protein, C terminal LK04_RS04640 PF00072 Response regulator receiver domain LK04_RS04645 PF16527 Two-component sensor protein CpxA, periplasmic domain LK04_RS04645 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS04645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS04645 PF00672 HAMP domain LK04_RS04650 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LK04_RS04655 PF00391 PEP-utilising enzyme, mobile domain LK04_RS04655 PF02896 PEP-utilising enzyme, TIM barrel domain LK04_RS04655 PF05524 PEP-utilising enzyme, N-terminal LK04_RS04660 PF00381 PTS HPr component phosphorylation site LK04_RS04670 PF00291 Pyridoxal-phosphate dependent enzyme LK04_RS04680 PF04354 ZipA, C-terminal FtsZ-binding domain LK04_RS04685 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LK04_RS04685 PF00533 BRCA1 C Terminus (BRCT) domain LK04_RS04685 PF12826 Helix-hairpin-helix motif LK04_RS04685 PF03120 NAD-dependent DNA ligase OB-fold domain LK04_RS04685 PF01653 NAD-dependent DNA ligase adenylation domain LK04_RS04690 PF12843 Putative quorum-sensing-regulated virulence factor LK04_RS04695 PF13593 SBF-like CPA transporter family (DUF4137) LK04_RS04700 PF03466 LysR substrate binding domain LK04_RS04700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS04730 PF00749 tRNA synthetases class I (E and Q), catalytic domain LK04_RS04735 PF07037 Putative transcription regulator (DUF1323) LK04_RS04740 PF01226 Formate/nitrite transporter LK04_RS04760 PF05995 Cysteine dioxygenase type I LK04_RS04770 PF00296 Luciferase-like monooxygenase LK04_RS04775 PF07662 Na+ dependent nucleoside transporter C-terminus LK04_RS04775 PF01773 Na+ dependent nucleoside transporter N-terminus LK04_RS04775 PF07670 Nucleoside recognition LK04_RS04780 PF01566 Natural resistance-associated macrophage protein LK04_RS04790 PF00248 Aldo/keto reductase family LK04_RS04795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LK04_RS04795 PF00205 Thiamine pyrophosphate enzyme, central domain LK04_RS04795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LK04_RS04800 PF02685 Glucokinase LK04_RS04805 PF00072 Response regulator receiver domain LK04_RS04805 PF04397 LytTr DNA-binding domain LK04_RS04810 PF07694 5TMR of 5TMR-LYT LK04_RS04810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS04810 PF06580 Histidine kinase LK04_RS04825 PF00155 Aminotransferase class I and II LK04_RS04830 PF13533 Biotin-lipoyl like LK04_RS04840 PF01614 Bacterial transcriptional regulator LK04_RS04840 PF09339 IclR helix-turn-helix domain LK04_RS04860 PF07690 Major Facilitator Superfamily LK04_RS04875 PF12833 Helix-turn-helix domain LK04_RS04950 PF01381 Helix-turn-helix LK04_RS04950 PF00717 Peptidase S24-like LK04_RS04985 PF05063 MT-A70 LK04_RS05000 PF06147 Protein of unknown function (DUF968) LK04_RS05020 PF00182 Chitinase class I LK04_RS05045 PF03354 Phage Terminase LK04_RS05050 PF04860 Phage portal protein LK04_RS05055 PF00574 Clp protease LK04_RS05090 PF04984 Phage tail sheath protein subtilisin-like domain LK04_RS05090 PF17482 Phage tail sheath C-terminal domain LK04_RS05130 PF04865 Baseplate J-like protein LK04_RS05135 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) LK04_RS05145 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LK04_RS05160 PF06183 DinI-like family LK04_RS05165 PF00717 Peptidase S24-like LK04_RS05180 PF01226 Formate/nitrite transporter LK04_RS05185 PF00005 ABC transporter LK04_RS05190 PF03379 CcmB protein LK04_RS05195 PF01578 Cytochrome C assembly protein LK04_RS05200 PF04995 Heme exporter protein D (CcmD) LK04_RS05205 PF03100 CcmE LK04_RS05210 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LK04_RS05210 PF01578 Cytochrome C assembly protein LK04_RS05215 PF08534 Redoxin LK04_RS05220 PF03918 Cytochrome C biogenesis protein LK04_RS05225 PF03918 Cytochrome C biogenesis protein LK04_RS05230 PF04333 MlaA lipoprotein LK04_RS05235 PF07690 Major Facilitator Superfamily LK04_RS05240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS05240 PF03466 LysR substrate binding domain LK04_RS05245 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LK04_RS05250 PF04175 Protein of unknown function (DUF406) LK04_RS05255 PF00108 Thiolase, N-terminal domain LK04_RS05255 PF02803 Thiolase, C-terminal domain LK04_RS05260 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LK04_RS05260 PF00378 Enoyl-CoA hydratase/isomerase LK04_RS05260 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LK04_RS05265 PF00300 Histidine phosphatase superfamily (branch 1) LK04_RS05270 PF01713 Smr domain LK04_RS05275 PF05175 Methyltransferase small domain LK04_RS05280 PF01264 Chorismate synthase LK04_RS05285 PF03411 Penicillin-insensitive murein endopeptidase LK04_RS05290 PF01925 Sulfite exporter TauE/SafE LK04_RS05295 PF04315 Elongation factor P hydroxylase LK04_RS05300 PF08891 YfcL protein LK04_RS05305 PF01266 FAD dependent oxidoreductase LK04_RS05305 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LK04_RS05310 PF00109 Beta-ketoacyl synthase, N-terminal domain LK04_RS05310 PF02801 Beta-ketoacyl synthase, C-terminal domain LK04_RS05315 PF07690 Major Facilitator Superfamily LK04_RS05320 PF00392 Bacterial regulatory proteins, gntR family LK04_RS05320 PF00155 Aminotransferase class I and II LK04_RS05325 PF00581 Rhodanese-like domain LK04_RS05345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LK04_RS05345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LK04_RS05345 PF11890 Domain of unknown function (DUF3410) LK04_RS05350 PF02774 Semialdehyde dehydrogenase, dimerisation domain LK04_RS05350 PF01118 Semialdehyde dehydrogenase, NAD binding domain LK04_RS05355 PF01416 tRNA pseudouridine synthase LK04_RS05360 PF09335 SNARE associated Golgi protein LK04_RS05365 PF01039 Carboxyl transferase domain LK04_RS05365 PF17848 Acetyl-coA carboxylase zinc finger domain LK04_RS05370 PF08245 Mur ligase middle domain LK04_RS05370 PF02875 Mur ligase family, glutamate ligase domain LK04_RS05375 PF05036 Sporulation related domain LK04_RS05380 PF02674 Colicin V production protein LK04_RS05385 PF00156 Phosphoribosyl transferase domain LK04_RS05390 PF02441 Flavoprotein LK04_RS05395 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS05400 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS05405 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS05410 PF00005 ABC transporter LK04_RS05415 PF04198 Putative sugar-binding domain LK04_RS05420 PF08125 Mannitol dehydrogenase C-terminal domain LK04_RS05420 PF01232 Mannitol dehydrogenase Rossmann domain LK04_RS05425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LK04_RS05425 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LK04_RS05430 PF07690 Major Facilitator Superfamily LK04_RS05435 PF01370 NAD dependent epimerase/dehydratase family LK04_RS05435 PF08338 Domain of unknown function (DUF1731) LK04_RS05440 PF14834 Glutathione S-transferase, C-terminal domain LK04_RS05440 PF02798 Glutathione S-transferase, N-terminal domain LK04_RS05445 PF00293 NUDIX domain LK04_RS05450 PF07085 DRTGG domain LK04_RS05450 PF01515 Phosphate acetyl/butaryl transferase LK04_RS05455 PF00871 Acetokinase family LK04_RS05460 PF04217 Protein of unknown function, DUF412 LK04_RS05465 PF03887 YfbU domain LK04_RS05470 PF13419 Haloacid dehalogenase-like hydrolase LK04_RS05480 PF00155 Aminotransferase class I and II LK04_RS05485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS05485 PF03466 LysR substrate binding domain LK04_RS05490 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LK04_RS05495 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LK04_RS05500 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LK04_RS05500 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LK04_RS05510 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LK04_RS05510 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LK04_RS05510 PF10531 SLBB domain LK04_RS05515 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LK04_RS05515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LK04_RS05515 PF00384 Molybdopterin oxidoreductase LK04_RS05515 PF01568 Molydopterin dinucleotide binding domain LK04_RS05520 PF00146 NADH dehydrogenase LK04_RS05525 PF12838 4Fe-4S dicluster domain LK04_RS05530 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LK04_RS05535 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LK04_RS05540 PF00361 Proton-conducting membrane transporter LK04_RS05540 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LK04_RS05545 PF00361 Proton-conducting membrane transporter LK04_RS05550 PF00361 Proton-conducting membrane transporter LK04_RS05555 PF13673 Acetyltransferase (GNAT) domain LK04_RS05560 PF04349 Periplasmic glucan biosynthesis protein, MdoG LK04_RS05565 PF05957 Bacterial protein of unknown function (DUF883) LK04_RS05570 PF00994 Probable molybdopterin binding domain LK04_RS05575 PF00111 2Fe-2S iron-sulfur cluster binding domain LK04_RS05580 PF00268 Ribonucleotide reductase, small chain LK04_RS05585 PF03477 ATP cone domain LK04_RS05585 PF00317 Ribonucleotide reductase, all-alpha domain LK04_RS05585 PF02867 Ribonucleotide reductase, barrel domain LK04_RS05590 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LK04_RS05590 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LK04_RS05595 PF03992 Antibiotic biosynthesis monooxygenase LK04_RS05605 PF00521 DNA gyrase/topoisomerase IV, subunit A LK04_RS05605 PF03989 DNA gyrase C-terminal domain, beta-propeller LK04_RS05610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS05610 PF09456 RcsC Alpha-Beta-Loop (ABL) LK04_RS05610 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS05610 PF00072 Response regulator receiver domain LK04_RS05615 PF00196 Bacterial regulatory proteins, luxR family LK04_RS05615 PF00072 Response regulator receiver domain LK04_RS05620 PF16359 RcsD-ABL domain LK04_RS05620 PF01627 Hpt domain LK04_RS05620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS05625 PF07690 Major Facilitator Superfamily LK04_RS05630 PF00267 Gram-negative porin LK04_RS05645 PF02424 ApbE family LK04_RS05650 PF13532 2OG-Fe(II) oxygenase superfamily LK04_RS05655 PF00005 ABC transporter LK04_RS05660 PF01648 4'-phosphopantetheinyl transferase superfamily LK04_RS05660 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LK04_RS05675 PF00884 Sulfatase LK04_RS05675 PF11893 Domain of unknown function (DUF3413) LK04_RS05680 PF07208 Protein of unknown function (DUF1414) LK04_RS05685 PF04245 37-kD nucleoid-associated bacterial protein LK04_RS05690 PF01386 Ribosomal L25p family LK04_RS05695 PF00271 Helicase conserved C-terminal domain LK04_RS05695 PF04851 Type III restriction enzyme, res subunit LK04_RS05700 PF01479 S4 domain LK04_RS05700 PF00849 RNA pseudouridylate synthase LK04_RS05705 PF07690 Major Facilitator Superfamily LK04_RS05710 PF13989 YejG-like protein LK04_RS05715 PF00005 ABC transporter LK04_RS05715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS05720 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS05720 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS05725 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS05730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS05735 PF00563 EAL domain LK04_RS05735 PF12792 CSS motif domain associated with EAL LK04_RS05740 PF00877 NlpC/P60 family LK04_RS05745 PF01569 PAP2 superfamily LK04_RS05750 PF02492 CobW/HypB/UreG, nucleotide-binding domain LK04_RS05750 PF07683 Cobalamin synthesis protein cobW C-terminal domain LK04_RS05755 PF01132 Elongation factor P (EF-P) OB domain LK04_RS05755 PF08207 Elongation factor P (EF-P) KOW-like domain LK04_RS05755 PF09285 Elongation factor P, C-terminal LK04_RS05760 PF00381 PTS HPr component phosphorylation site LK04_RS05760 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LK04_RS05765 PF00294 pfkB family carbohydrate kinase LK04_RS05770 PF02378 Phosphotransferase system, EIIC LK04_RS05770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LK04_RS05775 PF01261 Xylose isomerase-like TIM barrel LK04_RS05790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS05790 PF03466 LysR substrate binding domain LK04_RS05795 PF00324 Amino acid permease LK04_RS05800 PF01032 FecCD transport family LK04_RS05805 PF00005 ABC transporter LK04_RS05810 PF00756 Putative esterase LK04_RS05815 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS05815 PF00107 Zinc-binding dehydrogenase LK04_RS05820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS05820 PF03466 LysR substrate binding domain LK04_RS05825 PF06779 Uncharacterised MFS-type transporter YbfB LK04_RS05830 PF01227 GTP cyclohydrolase I LK04_RS05835 PF04235 Protein of unknown function (DUF418) LK04_RS05840 PF00356 Bacterial regulatory proteins, lacI family LK04_RS05845 PF13407 Periplasmic binding protein domain LK04_RS05850 PF00005 ABC transporter LK04_RS05855 PF02653 Branched-chain amino acid transport system / permease component LK04_RS05860 PF02698 DUF218 domain LK04_RS05865 PF00390 Malic enzyme, N-terminal domain LK04_RS05865 PF03949 Malic enzyme, NAD binding domain LK04_RS05870 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LK04_RS05870 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LK04_RS05875 PF04172 LrgB-like family LK04_RS05880 PF03788 LrgA family LK04_RS05885 PF04480 Protein of unknown function (DUF559) LK04_RS05890 PF01588 Putative tRNA binding domain LK04_RS05890 PF09334 tRNA synthetases class I (M) LK04_RS05895 PF10609 NUBPL iron-transfer P-loop NTPase LK04_RS05900 PF00583 Acetyltransferase (GNAT) family LK04_RS05905 PF10417 C-terminal domain of 1-Cys peroxiredoxin LK04_RS05905 PF00578 AhpC/TSA family LK04_RS05910 PF13192 Thioredoxin domain LK04_RS05910 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS05920 PF02110 Hydroxyethylthiazole kinase family LK04_RS05925 PF08543 Phosphomethylpyrimidine kinase LK04_RS05930 PF01791 DeoC/LacD family aldolase LK04_RS05935 PF07729 FCD domain LK04_RS05935 PF00392 Bacterial regulatory proteins, gntR family LK04_RS05940 PF08125 Mannitol dehydrogenase C-terminal domain LK04_RS05940 PF01232 Mannitol dehydrogenase Rossmann domain LK04_RS05945 PF07690 Major Facilitator Superfamily LK04_RS05950 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS05950 PF00107 Zinc-binding dehydrogenase LK04_RS05965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LK04_RS05965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS05970 PF00781 Diacylglycerol kinase catalytic domain LK04_RS05975 PF16325 Peptidase family U32 C-terminal domain LK04_RS05975 PF01136 Peptidase family U32 LK04_RS05980 PF00072 Response regulator receiver domain LK04_RS05980 PF00486 Transcriptional regulatory protein, C terminal LK04_RS05985 PF00672 HAMP domain LK04_RS05985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS05985 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS05990 PF07690 Major Facilitator Superfamily LK04_RS05995 PF00873 AcrB/AcrD/AcrF family LK04_RS06000 PF00873 AcrB/AcrD/AcrF family LK04_RS06005 PF13533 Biotin-lipoyl like LK04_RS06010 PF00248 Aldo/keto reductase family LK04_RS06015 PF04966 Carbohydrate-selective porin, OprB family LK04_RS06020 PF00012 Hsp70 protein LK04_RS06025 PF13426 PAS domain LK04_RS06025 PF08448 PAS fold LK04_RS06025 PF08447 PAS fold LK04_RS06025 PF05231 MASE1 LK04_RS06025 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS06025 PF00563 EAL domain LK04_RS06030 PF01569 PAP2 superfamily LK04_RS06035 PF00485 Phosphoribulokinase / Uridine kinase family LK04_RS06040 PF00692 dUTPase LK04_RS06045 PF05170 AsmA family LK04_RS06050 PF03741 Integral membrane protein TerC family LK04_RS06050 PF03471 Transporter associated domain LK04_RS06050 PF00571 CBS domain LK04_RS06055 PF02397 Bacterial sugar transferase LK04_RS06060 PF10531 SLBB domain LK04_RS06060 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LK04_RS06060 PF02563 Polysaccharide biosynthesis/export protein LK04_RS06065 PF01451 Low molecular weight phosphotyrosine protein phosphatase LK04_RS06070 PF02706 Chain length determinant protein LK04_RS06070 PF13807 G-rich domain on putative tyrosine kinase LK04_RS06070 PF13614 AAA domain LK04_RS06075 PF00535 Glycosyl transferase family 2 LK04_RS06080 PF00535 Glycosyl transferase family 2 LK04_RS06085 PF00534 Glycosyl transferases group 1 LK04_RS06090 PF09008 Head binding LK04_RS06095 PF04230 Polysaccharide pyruvyl transferase LK04_RS06100 PF00534 Glycosyl transferases group 1 LK04_RS06110 PF00483 Nucleotidyl transferase LK04_RS06115 PF16363 GDP-mannose 4,6 dehydratase LK04_RS06120 PF16363 GDP-mannose 4,6 dehydratase LK04_RS06125 PF04321 RmlD substrate binding domain LK04_RS06130 PF00483 Nucleotidyl transferase LK04_RS06135 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LK04_RS06140 PF00535 Glycosyl transferase family 2 LK04_RS06145 PF05045 Rhamnan synthesis protein F LK04_RS06150 PF01061 ABC-2 type transporter LK04_RS06155 PF00005 ABC transporter LK04_RS06160 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LK04_RS06160 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LK04_RS06165 PF00535 Glycosyl transferase family 2 LK04_RS06175 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS06180 PF04073 Aminoacyl-tRNA editing domain LK04_RS06195 PF01502 Phosphoribosyl-AMP cyclohydrolase LK04_RS06195 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LK04_RS06200 PF00977 Histidine biosynthesis protein LK04_RS06205 PF00977 Histidine biosynthesis protein LK04_RS06210 PF00117 Glutamine amidotransferase class-I LK04_RS06215 PF08645 Polynucleotide kinase 3 phosphatase LK04_RS06215 PF00475 Imidazoleglycerol-phosphate dehydratase LK04_RS06220 PF00155 Aminotransferase class I and II LK04_RS06225 PF00815 Histidinol dehydrogenase LK04_RS06230 PF08029 HisG, C-terminal domain LK04_RS06230 PF01634 ATP phosphoribosyltransferase LK04_RS06235 PF01370 NAD dependent epimerase/dehydratase family LK04_RS06240 PF01757 Acyltransferase family LK04_RS06250 PF00535 Glycosyl transferase family 2 LK04_RS06255 PF04138 GtrA-like protein LK04_RS06260 PF01266 FAD dependent oxidoreductase LK04_RS06265 PF07883 Cupin domain LK04_RS06265 PF01381 Helix-turn-helix LK04_RS06270 PF07722 Peptidase C26 LK04_RS06275 PF00120 Glutamine synthetase, catalytic domain LK04_RS06280 PF13520 Amino acid permease LK04_RS06285 PF00455 DeoR C terminal sensor domain LK04_RS06285 PF08220 DeoR-like helix-turn-helix domain LK04_RS06290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LK04_RS06290 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LK04_RS06295 PF07005 Sugar-binding N-terminal domain LK04_RS06295 PF17042 Nucleotide-binding C-terminal domain LK04_RS06300 PF00596 Class II Aldolase and Adducin N-terminal domain LK04_RS06305 PF01261 Xylose isomerase-like TIM barrel LK04_RS06310 PF02447 GntP family permease LK04_RS06315 PF00929 Exonuclease LK04_RS06315 PF08411 Exonuclease C-terminal LK04_RS06320 PF07943 Penicillin-binding protein 5, C-terminal domain LK04_RS06320 PF00768 D-alanyl-D-alanine carboxypeptidase LK04_RS06325 PF06445 GyrI-like small molecule binding domain LK04_RS06330 PF04632 Fusaric acid resistance protein family LK04_RS06335 PF04363 Protein of unknown function (DUF496) LK04_RS06340 PF00356 Bacterial regulatory proteins, lacI family LK04_RS06345 PF02698 DUF218 domain LK04_RS06350 PF08546 Ketopantoate reductase PanE/ApbA C terminal LK04_RS06350 PF02558 Ketopantoate reductase PanE/ApbA LK04_RS06355 PF00171 Aldehyde dehydrogenase family LK04_RS06360 PF09339 IclR helix-turn-helix domain LK04_RS06360 PF01614 Bacterial transcriptional regulator LK04_RS06365 PF00701 Dihydrodipicolinate synthetase family LK04_RS06370 PF07690 Major Facilitator Superfamily LK04_RS06375 PF00083 Sugar (and other) transporter LK04_RS06375 PF07690 Major Facilitator Superfamily LK04_RS06380 PF07690 Major Facilitator Superfamily LK04_RS06380 PF00083 Sugar (and other) transporter LK04_RS06385 PF03144 Elongation factor Tu domain 2 LK04_RS06385 PF03764 Elongation factor G, domain IV LK04_RS06385 PF14492 Elongation Factor G, domain II LK04_RS06385 PF00679 Elongation factor G C-terminus LK04_RS06385 PF00009 Elongation factor Tu GTP binding domain LK04_RS06390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS06395 PF00583 Acetyltransferase (GNAT) family LK04_RS06400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS06405 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS06410 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS06410 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS06415 PF00005 ABC transporter LK04_RS06415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS06420 PF00296 Luciferase-like monooxygenase LK04_RS06435 PF00296 Luciferase-like monooxygenase LK04_RS06445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS06445 PF03466 LysR substrate binding domain LK04_RS06455 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system LK04_RS06460 PF08759 Glycosyltransferase GT-D fold LK04_RS06460 PF01501 Glycosyl transferase family 8 LK04_RS06465 PF04030 D-arabinono-1,4-lactone oxidase LK04_RS06465 PF01565 FAD binding domain LK04_RS06475 PF03180 NLPA lipoprotein LK04_RS06480 PF09383 NIL domain LK04_RS06480 PF00005 ABC transporter LK04_RS06485 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS06495 PF00296 Luciferase-like monooxygenase LK04_RS06515 PF13407 Periplasmic binding protein domain LK04_RS06520 PF00005 ABC transporter LK04_RS06525 PF02653 Branched-chain amino acid transport system / permease component LK04_RS06530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS06530 PF03466 LysR substrate binding domain LK04_RS06535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS06535 PF03466 LysR substrate binding domain LK04_RS06540 PF00171 Aldehyde dehydrogenase family LK04_RS06545 PF00171 Aldehyde dehydrogenase family LK04_RS06555 PF01266 FAD dependent oxidoreductase LK04_RS06560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS06565 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS06570 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS06570 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS06575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS06575 PF00005 ABC transporter LK04_RS06580 PF01266 FAD dependent oxidoreductase LK04_RS06590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LK04_RS06595 PF01546 Peptidase family M20/M25/M40 LK04_RS06595 PF07687 Peptidase dimerisation domain LK04_RS06600 PF00202 Aminotransferase class-III LK04_RS06605 PF01037 Lrp/AsnC ligand binding domain LK04_RS06615 PF01968 Hydantoinase/oxoprolinase LK04_RS06615 PF05378 Hydantoinase/oxoprolinase N-terminal region LK04_RS06625 PF00106 short chain dehydrogenase LK04_RS06630 PF00563 EAL domain LK04_RS06630 PF08447 PAS fold LK04_RS06630 PF08448 PAS fold LK04_RS06630 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS06635 PF07702 UTRA domain LK04_RS06635 PF00392 Bacterial regulatory proteins, gntR family LK04_RS06640 PF06754 Phosphonate metabolism protein PhnG LK04_RS06645 PF05845 Bacterial phosphonate metabolism protein (PhnH) LK04_RS06650 PF05861 Bacterial phosphonate metabolism protein (PhnI) LK04_RS06655 PF06007 Phosphonate metabolism protein PhnJ LK04_RS06660 PF00005 ABC transporter LK04_RS06665 PF00005 ABC transporter LK04_RS06670 PF07969 Amidohydrolase family LK04_RS06680 PF12706 Beta-lactamase superfamily domain LK04_RS06685 PF00005 ABC transporter LK04_RS06695 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS06700 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS06705 PF00072 Response regulator receiver domain LK04_RS06705 PF13188 PAS domain LK04_RS06705 PF08448 PAS fold LK04_RS06705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS06705 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS06710 PF00005 ABC transporter LK04_RS06715 PF02653 Branched-chain amino acid transport system / permease component LK04_RS06720 PF13407 Periplasmic binding protein domain LK04_RS06730 PF01116 Fructose-bisphosphate aldolase class-II LK04_RS06740 PF00486 Transcriptional regulatory protein, C terminal LK04_RS06740 PF00072 Response regulator receiver domain LK04_RS06745 PF00860 Permease family LK04_RS06755 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LK04_RS06755 PF01048 Phosphorylase superfamily LK04_RS06765 PF13458 Periplasmic binding protein LK04_RS06770 PF02653 Branched-chain amino acid transport system / permease component LK04_RS06775 PF02653 Branched-chain amino acid transport system / permease component LK04_RS06775 PF11862 Domain of unknown function (DUF3382) LK04_RS06780 PF12399 Branched-chain amino acid ATP-binding cassette transporter LK04_RS06780 PF00005 ABC transporter LK04_RS06785 PF00005 ABC transporter LK04_RS06790 PF01554 MatE LK04_RS06795 PF07715 TonB-dependent Receptor Plug Domain LK04_RS06795 PF00593 TonB dependent receptor LK04_RS06800 PF18331 PKHD-type hydroxylase C-terminal domain LK04_RS06800 PF13640 2OG-Fe(II) oxygenase superfamily LK04_RS06810 PF06167 Glucose-regulated metallo-peptidase M90 LK04_RS06820 PF01966 HD domain LK04_RS06830 PF00672 HAMP domain LK04_RS06830 PF02743 Cache domain LK04_RS06830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS06835 PF00145 C-5 cytosine-specific DNA methylase LK04_RS06835 PF18284 DNA methylase N-terminal domain LK04_RS06840 PF03852 DNA mismatch endonuclease Vsr LK04_RS06850 PF05661 Protein of unknown function (DUF808) LK04_RS06855 PF09926 Uncharacterized small protein (DUF2158) LK04_RS06860 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS06860 PF17151 Periplasmic sensor domain LK04_RS06875 PF10733 Protein of unknown function (DUF2525) LK04_RS06880 PF10781 Dextransucrase DSRB LK04_RS06885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS06885 PF02203 Tar ligand binding domain homologue LK04_RS06885 PF00672 HAMP domain LK04_RS06890 PF00196 Bacterial regulatory proteins, luxR family LK04_RS06895 PF01311 Bacterial export proteins, family 1 LK04_RS06900 PF01313 Bacterial export proteins, family 3 LK04_RS06905 PF00813 FliP family LK04_RS06910 PF04347 Flagellar biosynthesis protein, FliO LK04_RS06915 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LK04_RS06915 PF16973 Flagellar motor switch protein FliN N-terminal LK04_RS06920 PF02154 Flagellar motor switch protein FliM LK04_RS06920 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LK04_RS06925 PF03748 Flagellar basal body-associated protein FliL LK04_RS06930 PF02120 Flagellar hook-length control protein FliK LK04_RS06935 PF02050 Flagellar FliJ protein LK04_RS06940 PF18269 T3SS EscN ATPase C-terminal domain LK04_RS06940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LK04_RS06945 PF02108 Flagellar assembly protein FliH LK04_RS06950 PF14842 FliG N-terminal domain LK04_RS06950 PF01706 FliG C-terminal domain LK04_RS06950 PF14841 FliG middle domain LK04_RS06955 PF01514 Secretory protein of YscJ/FliF family LK04_RS06955 PF08345 Flagellar M-ring protein C-terminal LK04_RS06960 PF02049 Flagellar hook-basal body complex protein FliE LK04_RS06970 PF04940 Sensors of blue-light using FAD LK04_RS06970 PF00563 EAL domain LK04_RS07005 PF06183 DinI-like family LK04_RS07010 PF10796 Sigma-S stabilisation anti-adaptor protein LK04_RS07020 PF13987 YedD-like protein LK04_RS07025 PF05400 Flagellar protein FliT LK04_RS07030 PF02561 Flagellar protein FliS LK04_RS07035 PF07195 Flagellar hook-associated protein 2 C-terminus LK04_RS07035 PF02465 Flagellar hook-associated protein 2 N-terminus LK04_RS07040 PF00669 Bacterial flagellin N-terminal helical region LK04_RS07040 PF08884 Flagellin D3 domain LK04_RS07040 PF00700 Bacterial flagellin C-terminal helical region LK04_RS07045 PF00535 Glycosyl transferase family 2 LK04_RS07055 PF04539 Sigma-70 region 3 LK04_RS07055 PF04545 Sigma-70, region 4 LK04_RS07055 PF04542 Sigma-70 region 2 LK04_RS07060 PF02899 Phage integrase, N-terminal SAM-like domain LK04_RS07065 PF00291 Pyridoxal-phosphate dependent enzyme LK04_RS07070 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS07075 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS07080 PF00005 ABC transporter LK04_RS07085 PF01757 Acyltransferase family LK04_RS07090 PF01757 Acyltransferase family LK04_RS07095 PF00171 Aldehyde dehydrogenase family LK04_RS07095 PF01619 Proline dehydrogenase LK04_RS07095 PF14850 DNA-binding domain of Proline dehydrogenase LK04_RS07095 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LK04_RS07100 PF00474 Sodium:solute symporter family LK04_RS07105 PF03239 Iron permease FTR1 family LK04_RS07110 PF13473 Cupredoxin-like domain LK04_RS07110 PF09375 Imelysin LK04_RS07115 PF04261 Dyp-type peroxidase family LK04_RS07120 PF02562 PhoH-like protein LK04_RS07130 PF00795 Carbon-nitrogen hydrolase LK04_RS07135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS07135 PF03466 LysR substrate binding domain LK04_RS07140 PF01848 Hok/gef family LK04_RS07160 PF00245 Alkaline phosphatase LK04_RS07165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LK04_RS07165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LK04_RS07170 PF01965 DJ-1/PfpI family LK04_RS07170 PF12833 Helix-turn-helix domain LK04_RS07175 PF05675 Protein of unknown function (DUF817) LK04_RS07180 PF01926 50S ribosome-binding GTPase LK04_RS07180 PF06071 Protein of unknown function (DUF933) LK04_RS07185 PF01195 Peptidyl-tRNA hydrolase LK04_RS07190 PF10762 Protein of unknown function (DUF2583) LK04_RS07195 PF17151 Periplasmic sensor domain LK04_RS07195 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS07200 PF14572 Phosphoribosyl synthetase-associated domain LK04_RS07200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LK04_RS07205 PF08544 GHMP kinases C terminal LK04_RS07205 PF00288 GHMP kinases N terminal domain LK04_RS07210 PF03550 Outer membrane lipoprotein LolB LK04_RS07215 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LK04_RS07215 PF01488 Shikimate / quinate 5-dehydrogenase LK04_RS07215 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LK04_RS07220 PF00472 RF-1 domain LK04_RS07220 PF03462 PCRF domain LK04_RS07225 PF13847 Methyltransferase domain LK04_RS07225 PF17827 PrmC N-terminal domain LK04_RS07230 PF04247 Invasion gene expression up-regulator, SirB LK04_RS07235 PF13369 Transglutaminase-like superfamily LK04_RS07240 PF00793 DAHP synthetase I family LK04_RS07245 PF01699 Sodium/calcium exchanger protein LK04_RS07250 PF04752 ChaC-like protein LK04_RS07255 PF00069 Protein kinase domain LK04_RS07280 PF06761 Intracellular multiplication and human macrophage-killing LK04_RS07280 PF06744 Type VI secretion protein IcmF C-terminal LK04_RS07280 PF14331 ImcF-related N-terminal domain LK04_RS07285 PF00691 OmpA family LK04_RS07285 PF13677 Membrane MotB of proton-channel complex MotA/MotB LK04_RS07295 PF03861 ANTAR domain LK04_RS07295 PF08376 Nitrate and nitrite sensing LK04_RS07305 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS07310 PF00005 ABC transporter LK04_RS07315 PF04324 BFD-like [2Fe-2S] binding domain LK04_RS07315 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LK04_RS07315 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS07315 PF13806 Rieske-like [2Fe-2S] domain LK04_RS07315 PF18267 Rubredoxin NAD+ reductase C-terminal domain LK04_RS07315 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LK04_RS07320 PF01568 Molydopterin dinucleotide binding domain LK04_RS07320 PF04324 BFD-like [2Fe-2S] binding domain LK04_RS07320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LK04_RS07320 PF00384 Molybdopterin oxidoreductase LK04_RS07325 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LK04_RS07325 PF10414 Sirohaem synthase dimerisation region LK04_RS07325 PF14824 Sirohaem biosynthesis protein central LK04_RS07330 PF01312 FlhB HrpN YscU SpaS Family LK04_RS07335 PF00771 FHIPEP family LK04_RS07345 PF00750 tRNA synthetases class I (R) LK04_RS07345 PF05746 DALR anticodon binding domain LK04_RS07345 PF03485 Arginyl tRNA synthetase N terminal domain LK04_RS07350 PF06185 YecM protein LK04_RS07355 PF00155 Aminotransferase class I and II LK04_RS07360 PF03932 CutC family LK04_RS07370 PF00465 Iron-containing alcohol dehydrogenase LK04_RS07375 PF01810 LysE type translocator LK04_RS07380 PF08003 Protein of unknown function (DUF1698) LK04_RS07385 PF13649 Methyltransferase domain LK04_RS07390 PF01904 Protein of unknown function DUF72 LK04_RS07395 PF00152 tRNA synthetases class II (D, K and N) LK04_RS07395 PF02938 GAD domain LK04_RS07395 PF01336 OB-fold nucleic acid binding domain LK04_RS07400 PF00293 NUDIX domain LK04_RS07405 PF01709 Transcriptional regulator LK04_RS07410 PF02075 Crossover junction endodeoxyribonuclease RuvC LK04_RS07415 PF07499 RuvA, C-terminal domain LK04_RS07415 PF01330 RuvA N terminal domain LK04_RS07420 PF17864 RuvB AAA lid domain LK04_RS07420 PF05491 RuvB C-terminal winged helix domain LK04_RS07420 PF05496 Holliday junction DNA helicase RuvB P-loop domain LK04_RS07425 PF00950 ABC 3 transport family LK04_RS07430 PF00005 ABC transporter LK04_RS07435 PF01297 Zinc-uptake complex component A periplasmic LK04_RS07440 PF01476 LysM domain LK04_RS07440 PF08525 Opacity-associated protein A N-terminal motif LK04_RS07440 PF01551 Peptidase family M23 LK04_RS07445 PF03279 Bacterial lipid A biosynthesis acyltransferase LK04_RS07450 PF07690 Major Facilitator Superfamily LK04_RS07455 PF00224 Pyruvate kinase, barrel domain LK04_RS07455 PF02887 Pyruvate kinase, alpha/beta domain LK04_RS07460 PF01418 Helix-turn-helix domain, rpiR family LK04_RS07460 PF01380 SIS domain LK04_RS07465 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LK04_RS07465 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LK04_RS07470 PF01081 KDPG and KHG aldolase LK04_RS07475 PF01370 NAD dependent epimerase/dehydratase family LK04_RS07475 PF02222 ATP-grasp domain LK04_RS07480 PF04391 Protein of unknown function (DUF533) LK04_RS07485 PF00326 Prolyl oligopeptidase family LK04_RS07485 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LK04_RS07490 PF00929 Exonuclease LK04_RS07495 PF06440 DNA polymerase III, theta subunit LK04_RS07500 PF04234 CopC domain LK04_RS07505 PF05425 Copper resistance protein D LK04_RS07510 PF10709 Protein of unknown function (DUF2511) LK04_RS07515 PF00589 Phage integrase family LK04_RS07515 PF02899 Phage integrase, N-terminal SAM-like domain LK04_RS07545 PF17482 Phage tail sheath C-terminal domain LK04_RS07545 PF04984 Phage tail sheath protein subtilisin-like domain LK04_RS07555 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LK04_RS07655 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LK04_RS07665 PF05840 Bacteriophage replication gene A protein (GPA) LK04_RS07685 PF17282 Family of unknown function (DUF5347) LK04_RS07690 PF06892 Phage regulatory protein CII (CP76) LK04_RS07725 PF00149 Calcineurin-like phosphoesterase LK04_RS07730 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LK04_RS07730 PF01189 16S rRNA methyltransferase RsmB/F LK04_RS07730 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LK04_RS07735 PF02470 MlaD protein LK04_RS07740 PF04403 Paraquat-inducible protein A LK04_RS07745 PF13185 GAF domain LK04_RS07750 PF04352 ProQ/FINO family LK04_RS07750 PF17516 ProQ C-terminal domain LK04_RS07755 PF17804 Tail specific protease N-terminal domain LK04_RS07755 PF03572 Peptidase family S41 LK04_RS07755 PF00595 PDZ domain LK04_RS07755 PF11818 C-terminal domain of tail specific protease (DUF3340) LK04_RS07760 PF01435 Peptidase family M48 LK04_RS07765 PF07690 Major Facilitator Superfamily LK04_RS07770 PF01614 Bacterial transcriptional regulator LK04_RS07770 PF09339 IclR helix-turn-helix domain LK04_RS07775 PF13996 YobH-like protein LK04_RS07780 PF13974 YebO-like protein LK04_RS07785 PF12706 Beta-lactamase superfamily domain LK04_RS07790 PF00313 'Cold-shock' DNA-binding domain LK04_RS07795 PF13847 Methyltransferase domain LK04_RS07800 PF06173 Protein of unknown function (DUF986) LK04_RS07805 PF03613 PTS system mannose/fructose/sorbose family IID component LK04_RS07810 PF03609 PTS system sorbose-specific iic component LK04_RS07815 PF03830 PTS system sorbose subfamily IIB component LK04_RS07815 PF03610 PTS system fructose IIA component LK04_RS07820 PF03741 Integral membrane protein TerC family LK04_RS07820 PF03471 Transporter associated domain LK04_RS07825 PF00563 EAL domain LK04_RS07825 PF12792 CSS motif domain associated with EAL LK04_RS07830 PF03315 Serine dehydratase beta chain LK04_RS07830 PF03313 Serine dehydratase alpha chain LK04_RS07835 PF00293 NUDIX domain LK04_RS07840 PF00425 chorismate binding enzyme LK04_RS07840 PF04715 Anthranilate synthase component I, N terminal region LK04_RS07845 PF03701 Uncharacterised protein family (UPF0181) LK04_RS07850 PF01042 Endoribonuclease L-PSP LK04_RS07855 PF13307 Helicase C-terminal domain LK04_RS07855 PF04851 Type III restriction enzyme, res subunit LK04_RS07860 PF00814 Glycoprotease family LK04_RS07865 PF03843 Outer membrane lipoprotein Slp family LK04_RS07870 PF00501 AMP-binding enzyme LK04_RS07870 PF13193 AMP-binding enzyme C-terminal domain LK04_RS07875 PF00570 HRDC domain LK04_RS07875 PF01612 3'-5' exonuclease LK04_RS07880 PF03776 Septum formation topological specificity factor MinE LK04_RS07885 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LK04_RS07890 PF05209 Septum formation inhibitor MinC, N-terminal domain LK04_RS07890 PF03775 Septum formation inhibitor MinC, C-terminal domain LK04_RS07895 PF05166 YcgL domain LK04_RS07900 PF01557 Fumarylacetoacetate (FAA) hydrolase family LK04_RS07905 PF03692 Putative zinc- or iron-chelating domain LK04_RS07910 PF02600 Disulfide bond formation protein DsbB LK04_RS07915 PF07840 FadR C-terminal domain LK04_RS07915 PF00392 Bacterial regulatory proteins, gntR family LK04_RS07920 PF04293 SpoVR like protein LK04_RS07925 PF01266 FAD dependent oxidoreductase LK04_RS07930 PF01168 Alanine racemase, N-terminal domain LK04_RS07930 PF00842 Alanine racemase, C-terminal domain LK04_RS07935 PF07690 Major Facilitator Superfamily LK04_RS07940 PF02397 Bacterial sugar transferase LK04_RS07950 PF00999 Sodium/hydrogen exchanger family LK04_RS07950 PF02080 TrkA-C domain LK04_RS07950 PF03471 Transporter associated domain LK04_RS07955 PF04285 Protein of unknown function (DUF444) LK04_RS07960 PF06798 PrkA serine protein kinase C-terminal domain LK04_RS07960 PF08298 PrkA AAA domain LK04_RS07965 PF06629 MltA-interacting protein MipA LK04_RS07970 PF00248 Aldo/keto reductase family LK04_RS07975 PF01263 Aldose 1-epimerase LK04_RS07980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LK04_RS07980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LK04_RS07985 PF01641 SelR domain LK04_RS07990 PF07023 Protein of unknown function (DUF1315) LK04_RS07995 PF00857 Isochorismatase family LK04_RS08000 PF17763 Glutaminase/Asparaginase C-terminal domain LK04_RS08000 PF00710 Asparaginase, N-terminal LK04_RS08005 PF01343 Peptidase family S49 LK04_RS08010 PF00881 Nitroreductase family LK04_RS08015 PF00586 AIR synthase related protein, N-terminal domain LK04_RS08015 PF02769 AIR synthase related protein, C-terminal domain LK04_RS08020 PF01751 Toprim domain LK04_RS08020 PF01131 DNA topoisomerase LK04_RS08025 PF07383 Protein of unknown function (DUF1496) LK04_RS08030 PF03372 Endonuclease/Exonuclease/phosphatase family LK04_RS08045 PF01842 ACT domain LK04_RS08045 PF00551 Formyl transferase LK04_RS08050 PF02810 SEC-C motif LK04_RS08055 PF01734 Patatin-like phospholipase LK04_RS08060 PF00072 Response regulator receiver domain LK04_RS08065 PF00483 Nucleotidyl transferase LK04_RS08070 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LK04_RS08070 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LK04_RS08070 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LK04_RS08075 PF01370 NAD dependent epimerase/dehydratase family LK04_RS08080 PF00816 H-NS histone family LK04_RS08085 PF00265 Thymidine kinase LK04_RS08090 PF00171 Aldehyde dehydrogenase family LK04_RS08090 PF00465 Iron-containing alcohol dehydrogenase LK04_RS08095 PF01914 MarC family integral membrane protein LK04_RS08100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS08105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS08110 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS08115 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS08115 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS08120 PF00005 ABC transporter LK04_RS08120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS08125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS08125 PF00005 ABC transporter LK04_RS08130 PF04269 Protein of unknown function, DUF440 LK04_RS08135 PF13396 Phospholipase_D-nuclease N-terminal LK04_RS08135 PF13091 PLD-like domain LK04_RS08140 PF03795 YCII-related domain LK04_RS08145 PF03544 Gram-negative bacterial TonB protein C-terminal LK04_RS08150 PF03061 Thioesterase superfamily LK04_RS08155 PF04279 Intracellular septation protein A LK04_RS08165 PF03922 OmpW family LK04_RS08170 PF04972 BON domain LK04_RS08175 PF00290 Tryptophan synthase alpha chain LK04_RS08180 PF00291 Pyridoxal-phosphate dependent enzyme LK04_RS08185 PF00218 Indole-3-glycerol phosphate synthase LK04_RS08185 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LK04_RS08190 PF02885 Glycosyl transferase family, helical bundle domain LK04_RS08190 PF00591 Glycosyl transferase family, a/b domain LK04_RS08195 PF00117 Glutamine amidotransferase class-I LK04_RS08195 PF02885 Glycosyl transferase family, helical bundle domain LK04_RS08195 PF00591 Glycosyl transferase family, a/b domain LK04_RS08200 PF04715 Anthranilate synthase component I, N terminal region LK04_RS08200 PF00425 chorismate binding enzyme LK04_RS08205 PF02811 PHP domain LK04_RS08210 PF01300 Telomere recombination LK04_RS08220 PF01479 S4 domain LK04_RS08220 PF00849 RNA pseudouridylate synthase LK04_RS08225 PF12557 Cob(I)alamin adenosyltransferase N terminal LK04_RS08225 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LK04_RS08230 PF00106 short chain dehydrogenase LK04_RS08235 PF08496 Peptidase family S49 N-terminal LK04_RS08235 PF01343 Peptidase family S49 LK04_RS08240 PF10692 Protein of unknown function (DUF2498) LK04_RS08245 PF01751 Toprim domain LK04_RS08245 PF01131 DNA topoisomerase LK04_RS08245 PF08272 Topoisomerase I zinc-ribbon-like LK04_RS08245 PF01396 Topoisomerase DNA binding C4 zinc finger LK04_RS08250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS08250 PF03466 LysR substrate binding domain LK04_RS08260 PF00330 Aconitase family (aconitate hydratase) LK04_RS08260 PF00694 Aconitase C-terminal domain LK04_RS08265 PF00925 GTP cyclohydrolase II LK04_RS08270 PF01569 PAP2 superfamily LK04_RS08275 PF06305 Lipopolysaccharide assembly protein A domain LK04_RS08280 PF18073 Rubredoxin metal binding domain LK04_RS08285 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LK04_RS08290 PF01253 Translation initiation factor SUI1 LK04_RS08295 PF05433 Glycine zipper 2TM domain LK04_RS08300 PF00596 Class II Aldolase and Adducin N-terminal domain LK04_RS08305 PF03812 2-keto-3-deoxygluconate permease LK04_RS08310 PF00378 Enoyl-CoA hydratase/isomerase LK04_RS08315 PF13426 PAS domain LK04_RS08315 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS08315 PF00563 EAL domain LK04_RS08325 PF13722 5TM C-terminal transporter carbon starvation CstA LK04_RS08325 PF02554 Carbon starvation protein CstA LK04_RS08330 PF17876 Cold shock domain LK04_RS08330 PF08206 Ribonuclease B OB domain LK04_RS08330 PF00773 RNB domain LK04_RS08330 PF00575 S1 RNA binding domain LK04_RS08335 PF00384 Molybdopterin oxidoreductase LK04_RS08340 PF00367 phosphotransferase system, EIIB LK04_RS08340 PF02378 Phosphotransferase system, EIIC LK04_RS08345 PF03466 LysR substrate binding domain LK04_RS08345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS08360 PF00005 ABC transporter LK04_RS08365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS08365 PF00005 ABC transporter LK04_RS08370 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS08370 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS08375 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS08380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS08390 PF00158 Sigma-54 interaction domain LK04_RS08390 PF02954 Bacterial regulatory protein, Fis family LK04_RS08395 PF04012 PspA/IM30 family LK04_RS08400 PF06667 Phage shock protein B LK04_RS08405 PF04024 PspC domain LK04_RS08410 PF09584 Phage shock protein PspD (Phageshock_PspD) LK04_RS08415 PF04317 YcjX-like family, DUF463 LK04_RS08420 PF05128 Domain of unknown function (DUF697) LK04_RS08425 PF18024 Helix-turn-helix domain LK04_RS08425 PF00158 Sigma-54 interaction domain LK04_RS08430 PF08534 Redoxin LK04_RS08435 PF13378 Enolase C-terminal domain-like LK04_RS08435 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LK04_RS08440 PF00246 Zinc carboxypeptidase LK04_RS08445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS08450 PF01544 CorA-like Mg2+ transporter protein LK04_RS08455 PF01171 PP-loop family LK04_RS08465 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LK04_RS08465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LK04_RS08465 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LK04_RS08465 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LK04_RS08465 PF10371 Domain of unknown function LK04_RS08470 PF02308 MgtC family LK04_RS08480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LK04_RS08480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LK04_RS08485 PF11739 Dicarboxylate transport LK04_RS08490 PF13617 YnbE-like lipoprotein LK04_RS08495 PF07027 Protein of unknown function (DUF1318) LK04_RS08500 PF02525 Flavodoxin-like fold LK04_RS08505 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LK04_RS08505 PF00271 Helicase conserved C-terminal domain LK04_RS08505 PF04408 Helicase associated domain (HA2) LK04_RS08505 PF11898 Domain of unknown function (DUF3418) LK04_RS08505 PF00270 DEAD/DEAH box helicase LK04_RS08510 PF00089 Trypsin LK04_RS08520 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LK04_RS08525 PF00672 HAMP domain LK04_RS08525 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS08525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS08530 PF00486 Transcriptional regulatory protein, C terminal LK04_RS08530 PF00072 Response regulator receiver domain LK04_RS08540 PF13520 Amino acid permease LK04_RS08545 PF07338 Protein of unknown function (DUF1471) LK04_RS08550 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LK04_RS08550 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LK04_RS08550 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LK04_RS08555 PF02233 NAD(P) transhydrogenase beta subunit LK04_RS08560 PF00582 Universal stress protein family LK04_RS08565 PF00027 Cyclic nucleotide-binding domain LK04_RS08565 PF00325 Bacterial regulatory proteins, crp family LK04_RS08570 PF01713 Smr domain LK04_RS08575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS08575 PF03466 LysR substrate binding domain LK04_RS08580 PF07690 Major Facilitator Superfamily LK04_RS08585 PF07063 Domain of unknown function (DUF1338) LK04_RS08595 PF00135 Carboxylesterase family LK04_RS08600 PF02203 Tar ligand binding domain homologue LK04_RS08600 PF00672 HAMP domain LK04_RS08600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS08605 PF03466 LysR substrate binding domain LK04_RS08605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS08610 PF00155 Aminotransferase class I and II LK04_RS08615 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS08620 PF07687 Peptidase dimerisation domain LK04_RS08620 PF01546 Peptidase family M20/M25/M40 LK04_RS08625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS08630 PF03466 LysR substrate binding domain LK04_RS08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS08640 PF07690 Major Facilitator Superfamily LK04_RS08645 PF00171 Aldehyde dehydrogenase family LK04_RS08655 PF06379 L-rhamnose-proton symport protein (RhaT) LK04_RS08660 PF02311 AraC-like ligand binding domain LK04_RS08660 PF12833 Helix-turn-helix domain LK04_RS08665 PF12833 Helix-turn-helix domain LK04_RS08665 PF02311 AraC-like ligand binding domain LK04_RS08670 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LK04_RS08670 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LK04_RS08675 PF06134 L-rhamnose isomerase (RhaA) LK04_RS08680 PF00596 Class II Aldolase and Adducin N-terminal domain LK04_RS08685 PF05336 L-rhamnose mutarotase LK04_RS08690 PF00440 Bacterial regulatory proteins, tetR family LK04_RS08695 PF07338 Protein of unknown function (DUF1471) LK04_RS08700 PF07690 Major Facilitator Superfamily LK04_RS08710 PF07690 Major Facilitator Superfamily LK04_RS08715 PF03466 LysR substrate binding domain LK04_RS08715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS08720 PF00480 ROK family LK04_RS08730 PF00860 Permease family LK04_RS08735 PF00571 CBS domain LK04_RS08735 PF00005 ABC transporter LK04_RS08740 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS08745 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LK04_RS08750 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS08755 PF07690 Major Facilitator Superfamily LK04_RS08760 PF06649 Protein of unknown function (DUF1161) LK04_RS08765 PF06932 Protein of unknown function (DUF1283) LK04_RS08770 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LK04_RS08775 PF00106 short chain dehydrogenase LK04_RS08780 PF01979 Amidohydrolase family LK04_RS08785 PF00941 FAD binding domain in molybdopterin dehydrogenase LK04_RS08785 PF03450 CO dehydrogenase flavoprotein C-terminal domain LK04_RS08790 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LK04_RS08790 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LK04_RS08800 PF01432 Peptidase family M3 LK04_RS08805 PF01494 FAD binding domain LK04_RS08815 PF01569 PAP2 superfamily LK04_RS08835 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LK04_RS08835 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LK04_RS08845 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LK04_RS08845 PF01266 FAD dependent oxidoreductase LK04_RS08850 PF00144 Beta-lactamase LK04_RS08880 PF07350 Protein of unknown function (DUF1479) LK04_RS08885 PF08220 DeoR-like helix-turn-helix domain LK04_RS08885 PF00455 DeoR C terminal sensor domain LK04_RS08890 PF00356 Bacterial regulatory proteins, lacI family LK04_RS08910 PF00005 ABC transporter LK04_RS08915 PF02653 Branched-chain amino acid transport system / permease component LK04_RS08920 PF02653 Branched-chain amino acid transport system / permease component LK04_RS08930 PF04198 Putative sugar-binding domain LK04_RS08935 PF01261 Xylose isomerase-like TIM barrel LK04_RS08940 PF01266 FAD dependent oxidoreductase LK04_RS08940 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LK04_RS08945 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LK04_RS08945 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LK04_RS08955 PF00005 ABC transporter LK04_RS08960 PF02653 Branched-chain amino acid transport system / permease component LK04_RS08965 PF13407 Periplasmic binding protein domain LK04_RS08970 PF08220 DeoR-like helix-turn-helix domain LK04_RS08970 PF00455 DeoR C terminal sensor domain LK04_RS08975 PF05433 Glycine zipper 2TM domain LK04_RS08980 PF07969 Amidohydrolase family LK04_RS08985 PF01654 Cytochrome bd terminal oxidase subunit I LK04_RS09000 PF00005 ABC transporter LK04_RS09000 PF00664 ABC transporter transmembrane region LK04_RS09020 PF09905 DNA-binding protein VF530 LK04_RS09025 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LK04_RS09040 PF10282 Lactonase, 7-bladed beta-propeller LK04_RS09050 PF16884 N-terminal domain of oxidoreductase LK04_RS09050 PF00107 Zinc-binding dehydrogenase LK04_RS09055 PF01479 S4 domain LK04_RS09055 PF00849 RNA pseudouridylate synthase LK04_RS09070 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS09075 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS09080 PF13416 Bacterial extracellular solute-binding protein LK04_RS09085 PF00005 ABC transporter LK04_RS09085 PF17912 MalK OB fold domain LK04_RS09090 PF04198 Putative sugar-binding domain LK04_RS09090 PF13936 Helix-turn-helix domain LK04_RS09095 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LK04_RS09095 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term LK04_RS09100 PF01261 Xylose isomerase-like TIM barrel LK04_RS09105 PF00121 Triosephosphate isomerase LK04_RS09110 PF02733 Dak1 domain LK04_RS09110 PF02734 DAK2 domain LK04_RS09115 PF07690 Major Facilitator Superfamily LK04_RS09120 PF02502 Ribose/Galactose Isomerase LK04_RS09125 PF02780 Transketolase, C-terminal domain LK04_RS09125 PF00456 Transketolase, thiamine diphosphate binding domain LK04_RS09125 PF02779 Transketolase, pyrimidine binding domain LK04_RS09130 PF10437 Bacterial lipoate protein ligase C-terminus LK04_RS09130 PF03099 Biotin/lipoate A/B protein ligase family LK04_RS09140 PF00440 Bacterial regulatory proteins, tetR family LK04_RS09150 PF02321 Outer membrane efflux protein LK04_RS09155 PF00873 AcrB/AcrD/AcrF family LK04_RS09160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LK04_RS09160 PF00529 HlyD membrane-fusion protein of T1SS LK04_RS09200 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LK04_RS09205 PF13677 Membrane MotB of proton-channel complex MotA/MotB LK04_RS09205 PF00691 OmpA family LK04_RS09210 PF06744 Type VI secretion protein IcmF C-terminal LK04_RS09210 PF06761 Intracellular multiplication and human macrophage-killing LK04_RS09210 PF14331 ImcF-related N-terminal domain LK04_RS09220 PF06812 ImpA, N-terminal, type VI secretion system LK04_RS09225 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LK04_RS09230 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LK04_RS09260 PF05947 Type VI secretion system, TssF LK04_RS09270 PF10431 C-terminal, D2-small domain, of ClpB protein LK04_RS09270 PF00004 ATPase family associated with various cellular activities (AAA) LK04_RS09270 PF17871 AAA lid domain LK04_RS09270 PF07724 AAA domain (Cdc48 subfamily) LK04_RS09275 PF08308 PEGA domain LK04_RS09275 PF00069 Protein kinase domain LK04_RS09295 PF01810 LysE type translocator LK04_RS09305 PF01011 PQQ enzyme repeat LK04_RS09315 PF00296 Luciferase-like monooxygenase LK04_RS09330 PF00132 Bacterial transferase hexapeptide (six repeats) LK04_RS09340 PF03466 LysR substrate binding domain LK04_RS09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS09345 PF07690 Major Facilitator Superfamily LK04_RS09350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LK04_RS09350 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS09355 PF03466 LysR substrate binding domain LK04_RS09355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS09365 PF16338 Domain of unknown function (DUF4968) LK04_RS09365 PF17137 Domain of unknown function (DUF5110) LK04_RS09365 PF01055 Glycosyl hydrolases family 31 LK04_RS09365 PF13802 Galactose mutarotase-like LK04_RS09370 PF07690 Major Facilitator Superfamily LK04_RS09375 PF03786 D-mannonate dehydratase (UxuA) LK04_RS09380 PF01232 Mannitol dehydrogenase Rossmann domain LK04_RS09380 PF08125 Mannitol dehydrogenase C-terminal domain LK04_RS09385 PF02614 Glucuronate isomerase LK04_RS09390 PF07729 FCD domain LK04_RS09390 PF00392 Bacterial regulatory proteins, gntR family LK04_RS09395 PF00155 Aminotransferase class I and II LK04_RS09400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LK04_RS09410 PF13378 Enolase C-terminal domain-like LK04_RS09410 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LK04_RS09415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS09420 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS09425 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS09425 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS09430 PF00005 ABC transporter LK04_RS09430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS09435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS09435 PF00005 ABC transporter LK04_RS09445 PF00578 AhpC/TSA family LK04_RS09465 PF00106 short chain dehydrogenase LK04_RS09470 PF07690 Major Facilitator Superfamily LK04_RS09475 PF03466 LysR substrate binding domain LK04_RS09475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS09490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LK04_RS09490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LK04_RS09490 PF02378 Phosphotransferase system, EIIC LK04_RS09500 PF01116 Fructose-bisphosphate aldolase class-II LK04_RS09505 PF03611 PTS system sugar-specific permease component LK04_RS09515 PF00365 Phosphofructokinase LK04_RS09520 PF01565 FAD binding domain LK04_RS09520 PF09330 D-lactate dehydrogenase, membrane binding LK04_RS09525 PF04264 YceI-like domain LK04_RS09535 PF01381 Helix-turn-helix LK04_RS09540 PF00675 Insulinase (Peptidase family M16) LK04_RS09545 PF04055 Radical SAM superfamily LK04_RS09545 PF13186 Iron-sulfur cluster-binding domain LK04_RS09550 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LK04_RS09555 PF03070 TENA/THI-4/PQQC family LK04_RS09560 PF12706 Beta-lactamase superfamily domain LK04_RS09565 PF01244 Membrane dipeptidase (Peptidase family M19) LK04_RS09570 PF09084 NMT1/THI5 like LK04_RS09580 PF00682 HMGL-like LK04_RS09580 PF08502 LeuA allosteric (dimerisation) domain LK04_RS09585 PF12852 Cupin LK04_RS09585 PF12833 Helix-turn-helix domain LK04_RS09590 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LK04_RS09590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LK04_RS09595 PF07715 TonB-dependent Receptor Plug Domain LK04_RS09595 PF00593 TonB dependent receptor LK04_RS09600 PF00857 Isochorismatase family LK04_RS09610 PF07883 Cupin domain LK04_RS09610 PF01381 Helix-turn-helix LK04_RS09615 PF03594 Benzoate membrane transport protein LK04_RS09640 PF00545 ribonuclease LK04_RS09645 PF12833 Helix-turn-helix domain LK04_RS09650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LK04_RS09650 PF00529 HlyD membrane-fusion protein of T1SS LK04_RS09655 PF00873 AcrB/AcrD/AcrF family LK04_RS09660 PF16736 Single Cache-like LK04_RS09660 PF00989 PAS fold LK04_RS09660 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS09660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS09665 PF00486 Transcriptional regulatory protein, C terminal LK04_RS09665 PF00072 Response regulator receiver domain LK04_RS09670 PF01292 Prokaryotic cytochrome b561 LK04_RS09675 PF00174 Oxidoreductase molybdopterin binding domain LK04_RS09695 PF05472 DNA replication terminus site-binding protein (Ter protein) LK04_RS09700 PF10415 Fumarase C C-terminus LK04_RS09700 PF00206 Lyase LK04_RS09705 PF01238 Phosphomannose isomerase type I LK04_RS09710 PF06097 Bacterial protein of unknown function (DUF945) LK04_RS09715 PF00356 Bacterial regulatory proteins, lacI family LK04_RS09715 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LK04_RS09720 PF00367 phosphotransferase system, EIIB LK04_RS09720 PF02378 Phosphotransferase system, EIIC LK04_RS09875 PF00959 Phage lysozyme LK04_RS09920 PF06992 Replication protein P LK04_RS09990 PF12684 PDDEXK-like domain of unknown function (DUF3799) LK04_RS09990 PF06630 Enterobacterial exodeoxyribonuclease VIII LK04_RS10005 PF05869 DNA N-6-adenine-methyltransferase (Dam) LK04_RS10025 PF00589 Phage integrase family LK04_RS10025 PF12167 Arm DNA-binding domain LK04_RS10030 PF02378 Phosphotransferase system, EIIC LK04_RS10030 PF00367 phosphotransferase system, EIIB LK04_RS10035 PF00155 Aminotransferase class I and II LK04_RS10040 PF00962 Adenosine/AMP deaminase LK04_RS10045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS10045 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LK04_RS10050 PF12833 Helix-turn-helix domain LK04_RS10050 PF02311 AraC-like ligand binding domain LK04_RS10055 PF02653 Branched-chain amino acid transport system / permease component LK04_RS10060 PF00005 ABC transporter LK04_RS10065 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LK04_RS10070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LK04_RS10075 PF02610 L-arabinose isomerase LK04_RS10075 PF11762 L-arabinose isomerase C-terminal domain LK04_RS10085 PF02653 Branched-chain amino acid transport system / permease component LK04_RS10090 PF02653 Branched-chain amino acid transport system / permease component LK04_RS10095 PF00005 ABC transporter LK04_RS10100 PF13407 Periplasmic binding protein domain LK04_RS10105 PF05321 Haemolysin expression modulating protein LK04_RS10110 PF10754 Protein of unknown function (DUF2569) LK04_RS10115 PF02508 Rnf-Nqr subunit, membrane protein LK04_RS10120 PF04060 Putative Fe-S cluster LK04_RS10125 PF12838 4Fe-4S dicluster domain LK04_RS10125 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LK04_RS10125 PF13375 RnfC Barrel sandwich hybrid domain LK04_RS10125 PF10531 SLBB domain LK04_RS10130 PF03116 NQR2, RnfD, RnfE family LK04_RS10135 PF04205 FMN-binding domain LK04_RS10140 PF02508 Rnf-Nqr subunit, membrane protein LK04_RS10145 PF10576 Iron-sulfur binding domain of endonuclease III LK04_RS10145 PF00633 Helix-hairpin-helix motif LK04_RS10145 PF00730 HhH-GPD superfamily base excision DNA repair protein LK04_RS10150 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS10150 PF00107 Zinc-binding dehydrogenase LK04_RS10155 PF00117 Glutamine amidotransferase class-I LK04_RS10155 PF06418 CTP synthase N-terminus LK04_RS10165 PF03466 LysR substrate binding domain LK04_RS10165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS10170 PF00043 Glutathione S-transferase, C-terminal domain LK04_RS10170 PF02798 Glutathione S-transferase, N-terminal domain LK04_RS10180 PF08543 Phosphomethylpyrimidine kinase LK04_RS10185 PF00579 tRNA synthetases class I (W and Y) LK04_RS10185 PF01479 S4 domain LK04_RS10190 PF01243 Pyridoxamine 5'-phosphate oxidase LK04_RS10190 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LK04_RS10195 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme LK04_RS10200 PF03702 Anhydro-N-acetylmuramic acid kinase LK04_RS10205 PF05433 Glycine zipper 2TM domain LK04_RS10210 PF01047 MarR family LK04_RS10215 PF07869 Protein of unknown function (DUF1656) LK04_RS10220 PF00529 HlyD membrane-fusion protein of T1SS LK04_RS10220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LK04_RS10225 PF04632 Fusaric acid resistance protein family LK04_RS10235 PF00080 Copper/zinc superoxide dismutase (SODC) LK04_RS10240 PF00248 Aldo/keto reductase family LK04_RS10245 PF06945 Protein of unknown function (DUF1289) LK04_RS10250 PF08019 Phosphoethanolamine transferase EptA/EptB LK04_RS10250 PF00884 Sulfatase LK04_RS10255 PF16925 Tetracyclin repressor-like, C-terminal domain LK04_RS10255 PF00440 Bacterial regulatory proteins, tetR family LK04_RS10260 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LK04_RS10265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LK04_RS10270 PF00929 Exonuclease LK04_RS10275 PF00462 Glutaredoxin LK04_RS10280 PF00877 NlpC/P60 family LK04_RS10285 PF00356 Bacterial regulatory proteins, lacI family LK04_RS10290 PF03466 LysR substrate binding domain LK04_RS10290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS10295 PF07690 Major Facilitator Superfamily LK04_RS10305 PF00677 Lumazine binding domain LK04_RS10310 PF01554 MatE LK04_RS10330 PF02887 Pyruvate kinase, alpha/beta domain LK04_RS10330 PF00224 Pyruvate kinase, barrel domain LK04_RS10335 PF04728 Lipoprotein leucine-zipper LK04_RS10340 PF01476 LysM domain LK04_RS10340 PF17969 L,D-transpeptidase C-terminal domain LK04_RS10340 PF03734 L,D-transpeptidase catalytic domain LK04_RS10345 PF02657 Fe-S metabolism associated domain LK04_RS10350 PF00266 Aminotransferase class-V LK04_RS10355 PF01458 Uncharacterized protein family (UPF0051) LK04_RS10360 PF00005 ABC transporter LK04_RS10365 PF01458 Uncharacterized protein family (UPF0051) LK04_RS10370 PF01521 Iron-sulphur cluster biosynthesis LK04_RS10385 PF01594 AI-2E family transporter LK04_RS10395 PF00391 PEP-utilising enzyme, mobile domain LK04_RS10395 PF02896 PEP-utilising enzyme, TIM barrel domain LK04_RS10395 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LK04_RS10400 PF03618 Kinase/pyrophosphorylase LK04_RS10405 PF00793 DAHP synthetase I family LK04_RS10410 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LK04_RS10420 PF00877 NlpC/P60 family LK04_RS10425 PF00005 ABC transporter LK04_RS10430 PF00255 Glutathione peroxidase LK04_RS10435 PF01032 FecCD transport family LK04_RS10445 PF00216 Bacterial DNA-binding protein LK04_RS10450 PF03483 B3/4 domain LK04_RS10450 PF01588 Putative tRNA binding domain LK04_RS10450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LK04_RS10450 PF03147 Ferredoxin-fold anticodon binding domain LK04_RS10450 PF03484 tRNA synthetase B5 domain LK04_RS10455 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LK04_RS10455 PF01409 tRNA synthetases class II core domain (F) LK04_RS10460 PF00453 Ribosomal protein L20 LK04_RS10465 PF01632 Ribosomal protein L35 LK04_RS10470 PF05198 Translation initiation factor IF-3, N-terminal domain LK04_RS10470 PF00707 Translation initiation factor IF-3, C-terminal domain LK04_RS10475 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LK04_RS10475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LK04_RS10475 PF03129 Anticodon binding domain LK04_RS10475 PF02824 TGS domain LK04_RS10480 PF04338 Protein of unknown function, DUF481 LK04_RS10485 PF11080 Endoribonuclease GhoS LK04_RS10490 PF03881 Fructosamine kinase LK04_RS10495 PF14002 YniB-like protein LK04_RS10500 PF13419 Haloacid dehalogenase-like hydrolase LK04_RS10505 PF04962 KduI/IolB family LK04_RS10515 PF04307 LexA-binding, inner membrane-associated putative hydrolase LK04_RS10520 PF00375 Sodium:dicarboxylate symporter family LK04_RS10530 PF04355 SmpA / OmlA family LK04_RS10535 PF07690 Major Facilitator Superfamily LK04_RS10540 PF02540 NAD synthase LK04_RS10550 PF07813 LTXXQ motif family protein LK04_RS10555 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LK04_RS10560 PF04996 Succinylarginine dihydrolase LK04_RS10565 PF00171 Aldehyde dehydrogenase family LK04_RS10570 PF04958 Arginine N-succinyltransferase beta subunit LK04_RS10575 PF00202 Aminotransferase class-III LK04_RS10580 PF00267 Gram-negative porin LK04_RS10595 PF11924 Inverse autotransporter, beta-domain LK04_RS10605 PF02653 Branched-chain amino acid transport system / permease component LK04_RS10610 PF00005 ABC transporter LK04_RS10620 PF13407 Periplasmic binding protein domain LK04_RS10630 PF00455 DeoR C terminal sensor domain LK04_RS10630 PF08220 DeoR-like helix-turn-helix domain LK04_RS10635 PF04344 Chemotaxis phosphatase, CheZ LK04_RS10640 PF00072 Response regulator receiver domain LK04_RS10645 PF01339 CheB methylesterase LK04_RS10645 PF00072 Response regulator receiver domain LK04_RS10650 PF01739 CheR methyltransferase, SAM binding domain LK04_RS10650 PF03705 CheR methyltransferase, all-alpha domain LK04_RS10655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS10655 PF00672 HAMP domain LK04_RS10655 PF02203 Tar ligand binding domain homologue LK04_RS10660 PF00672 HAMP domain LK04_RS10660 PF02203 Tar ligand binding domain homologue LK04_RS10660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS10665 PF02203 Tar ligand binding domain homologue LK04_RS10665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS10665 PF00672 HAMP domain LK04_RS10670 PF01584 CheW-like domain LK04_RS10675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS10675 PF01584 CheW-like domain LK04_RS10675 PF09078 CheY binding LK04_RS10675 PF02895 Signal transducing histidine kinase, homodimeric domain LK04_RS10675 PF01627 Hpt domain LK04_RS10680 PF13677 Membrane MotB of proton-channel complex MotA/MotB LK04_RS10680 PF00691 OmpA family LK04_RS10685 PF01618 MotA/TolQ/ExbB proton channel family LK04_RS10690 PF05280 Flagellar transcriptional activator (FlhC) LK04_RS10695 PF05247 Flagellar transcriptional activator (FlhD) LK04_RS10700 PF00982 Glycosyltransferase family 20 LK04_RS10705 PF02358 Trehalose-phosphatase LK04_RS10725 PF03601 Conserved hypothetical protein 698 LK04_RS10740 PF13438 Domain of unknown function (DUF4113) LK04_RS10740 PF00817 impB/mucB/samB family LK04_RS10740 PF11799 impB/mucB/samB family C-terminal domain LK04_RS10745 PF00717 Peptidase S24-like LK04_RS10750 PF00593 TonB dependent receptor LK04_RS10750 PF07715 TonB-dependent Receptor Plug Domain LK04_RS10755 PF03466 LysR substrate binding domain LK04_RS10755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS10770 PF02798 Glutathione S-transferase, N-terminal domain LK04_RS10775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS10775 PF03466 LysR substrate binding domain LK04_RS10780 PF00378 Enoyl-CoA hydratase/isomerase LK04_RS10785 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LK04_RS10790 PF00924 Mechanosensitive ion channel LK04_RS10800 PF15567 Immunity protein 35 LK04_RS10810 PF13673 Acetyltransferase (GNAT) domain LK04_RS10810 PF04229 GrpB protein LK04_RS10840 PF13378 Enolase C-terminal domain-like LK04_RS10840 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LK04_RS10845 PF00392 Bacterial regulatory proteins, gntR family LK04_RS10845 PF07729 FCD domain LK04_RS10855 PF07690 Major Facilitator Superfamily LK04_RS10860 PF00107 Zinc-binding dehydrogenase LK04_RS10860 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS10870 PF10685 Stress-induced bacterial acidophilic repeat motif LK04_RS10885 PF01625 Peptide methionine sulfoxide reductase LK04_RS10890 PF00005 ABC transporter LK04_RS10905 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LK04_RS10905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS10905 PF00989 PAS fold LK04_RS10905 PF17203 Single cache domain 3 LK04_RS10910 PF00072 Response regulator receiver domain LK04_RS10915 PF02424 ApbE family LK04_RS10920 PF00890 FAD binding domain LK04_RS10920 PF14537 Cytochrome c3 LK04_RS10925 PF00939 Sodium:sulfate symporter transmembrane region LK04_RS10930 PF05681 Fumarate hydratase (Fumerase) LK04_RS10930 PF05683 Fumarase C-terminus LK04_RS10945 PF00117 Glutamine amidotransferase class-I LK04_RS10945 PF00958 GMP synthase C terminal domain LK04_RS10950 PF00892 EamA-like transporter family LK04_RS10955 PF02515 CoA-transferase family III LK04_RS10960 PF02613 Nitrate reductase delta subunit LK04_RS10965 PF02811 PHP domain LK04_RS10970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LK04_RS10975 PF01204 Trehalase LK04_RS10980 PF13333 Integrase core domain LK04_RS10980 PF00665 Integrase core domain LK04_RS10980 PF13276 HTH-like domain LK04_RS10990 PF07715 TonB-dependent Receptor Plug Domain LK04_RS10990 PF00593 TonB dependent receptor LK04_RS10995 PF04226 Transglycosylase associated protein LK04_RS11000 PF07317 Flagellar regulator YcgR LK04_RS11000 PF07238 PilZ domain LK04_RS11005 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LK04_RS11005 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LK04_RS11010 PF02779 Transketolase, pyrimidine binding domain LK04_RS11010 PF02780 Transketolase, C-terminal domain LK04_RS11015 PF00456 Transketolase, thiamine diphosphate binding domain LK04_RS11020 PF02653 Branched-chain amino acid transport system / permease component LK04_RS11025 PF00005 ABC transporter LK04_RS11035 PF13407 Periplasmic binding protein domain LK04_RS11040 PF04198 Putative sugar-binding domain LK04_RS11045 PF01464 Transglycosylase SLT domain LK04_RS11050 PF02016 LD-carboxypeptidase N-terminal domain LK04_RS11050 PF17676 LD-carboxypeptidase C-terminal domain LK04_RS11065 PF06004 Bacterial protein of unknown function (DUF903) LK04_RS11115 PF00924 Mechanosensitive ion channel LK04_RS11120 PF04138 GtrA-like protein LK04_RS11125 PF00535 Glycosyl transferase family 2 LK04_RS11135 PF00180 Isocitrate/isopropylmalate dehydrogenase LK04_RS11140 PF00849 RNA pseudouridylate synthase LK04_RS11145 PF00293 NUDIX domain LK04_RS11155 PF04356 Protein of unknown function (DUF489) LK04_RS11160 PF08328 Adenylosuccinate lyase C-terminal LK04_RS11160 PF00206 Lyase LK04_RS11165 PF00486 Transcriptional regulatory protein, C terminal LK04_RS11165 PF00072 Response regulator receiver domain LK04_RS11170 PF08918 PhoQ Sensor LK04_RS11170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS11175 PF08007 Cupin superfamily protein LK04_RS11180 PF01546 Peptidase family M20/M25/M40 LK04_RS11180 PF07687 Peptidase dimerisation domain LK04_RS11185 PF02146 Sir2 family LK04_RS11190 PF12704 MacB-like periplasmic core domain LK04_RS11190 PF02687 FtsX-like permease family LK04_RS11195 PF00005 ABC transporter LK04_RS11200 PF02687 FtsX-like permease family LK04_RS11200 PF12704 MacB-like periplasmic core domain LK04_RS11210 PF00270 DEAD/DEAH box helicase LK04_RS11210 PF00271 Helicase conserved C-terminal domain LK04_RS11210 PF03461 TRCF domain LK04_RS11210 PF17757 UvrB interaction domain LK04_RS11210 PF02559 CarD-like/TRCF domain LK04_RS11215 PF05433 Glycine zipper 2TM domain LK04_RS11220 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS11225 PF05728 Uncharacterised protein family (UPF0227) LK04_RS11230 PF00933 Glycosyl hydrolase family 3 N terminal domain LK04_RS11235 PF01636 Phosphotransferase enzyme family LK04_RS11240 PF13036 Peptidoglycan-synthase activator LpoB LK04_RS11245 PF07233 Protein of unknown function (DUF1425) LK04_RS11250 PF01230 HIT domain LK04_RS11260 PF07470 Glycosyl Hydrolase Family 88 LK04_RS11265 PF02378 Phosphotransferase system, EIIC LK04_RS11265 PF00367 phosphotransferase system, EIIB LK04_RS11270 PF01026 TatD related DNase LK04_RS11275 PF09115 DNA polymerase III, delta subunit, C terminal LK04_RS11280 PF02223 Thymidylate kinase LK04_RS11285 PF02618 YceG-like family LK04_RS11290 PF01063 Amino-transferase class IV LK04_RS11295 PF02801 Beta-ketoacyl synthase, C-terminal domain LK04_RS11295 PF00109 Beta-ketoacyl synthase, N-terminal domain LK04_RS11300 PF00550 Phosphopantetheine attachment site LK04_RS11310 PF00698 Acyl transferase domain LK04_RS11315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LK04_RS11315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LK04_RS11320 PF02504 Fatty acid synthesis protein LK04_RS11325 PF01783 Ribosomal L32p protein family LK04_RS11330 PF02620 Large ribosomal RNA subunit accumulation protein YceD LK04_RS11335 PF02545 Maf-like protein LK04_RS11340 PF00849 RNA pseudouridylate synthase LK04_RS11340 PF01479 S4 domain LK04_RS11345 PF00575 S1 RNA binding domain LK04_RS11345 PF10150 Ribonuclease E/G family LK04_RS11345 PF12111 Polyribonucleotide phosphorylase C terminal LK04_RS11350 PF00669 Bacterial flagellin N-terminal helical region LK04_RS11355 PF00460 Flagella basal body rod protein LK04_RS11355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LK04_RS11360 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LK04_RS11360 PF10135 Rod binding protein LK04_RS11365 PF02119 Flagellar P-ring protein LK04_RS11370 PF02107 Flagellar L-ring protein LK04_RS11375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LK04_RS11375 PF00460 Flagella basal body rod protein LK04_RS11380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LK04_RS11380 PF00460 Flagella basal body rod protein LK04_RS11385 PF07559 Flagellar basal body protein FlaE LK04_RS11385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LK04_RS11385 PF00460 Flagella basal body rod protein LK04_RS11390 PF13861 FlgD Tudor-like domain LK04_RS11390 PF13860 FlgD Ig-like domain LK04_RS11390 PF03963 Flagellar hook capping protein - N-terminal region LK04_RS11395 PF00460 Flagella basal body rod protein LK04_RS11395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LK04_RS11400 PF00460 Flagella basal body rod protein LK04_RS11405 PF17656 FlgA N-terminal domain LK04_RS11405 PF13144 Chaperone for flagella basal body P-ring formation LK04_RS11410 PF04316 Anti-sigma-28 factor, FlgM LK04_RS11415 PF05130 FlgN protein LK04_RS11420 PF03023 Lipid II flippase MurJ LK04_RS11425 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS11430 PF04337 Protein of unknown function, DUF480 LK04_RS11435 PF13302 Acetyltransferase (GNAT) domain LK04_RS11440 PF07690 Major Facilitator Superfamily LK04_RS11445 PF04399 Glutaredoxin 2, C terminal domain LK04_RS11445 PF13417 Glutathione S-transferase, N-terminal domain LK04_RS11450 PF07273 Protein of unknown function (DUF1439) LK04_RS11455 PF01979 Amidohydrolase family LK04_RS11460 PF06183 DinI-like family LK04_RS11470 PF13991 BssS protein family LK04_RS11475 PF01266 FAD dependent oxidoreductase LK04_RS11480 PF01292 Prokaryotic cytochrome b561 LK04_RS11485 PF04264 YceI-like domain LK04_RS11490 PF17773 UPF0176 acylphosphatase like domain LK04_RS11490 PF00581 Rhodanese-like domain LK04_RS11490 PF12368 Rhodanase C-terminal LK04_RS11495 PF03279 Bacterial lipid A biosynthesis acyltransferase LK04_RS11505 PF13984 MsyB protein LK04_RS11510 PF07119 Protein of unknown function (DUF1375) LK04_RS11515 PF00535 Glycosyl transferase family 2 LK04_RS11520 PF04349 Periplasmic glucan biosynthesis protein, MdoG LK04_RS11525 PF01757 Acyltransferase family LK04_RS11530 PF13091 PLD-like domain LK04_RS11540 PF07715 TonB-dependent Receptor Plug Domain LK04_RS11540 PF00593 TonB dependent receptor LK04_RS11545 PF00109 Beta-ketoacyl synthase, N-terminal domain LK04_RS11545 PF02801 Beta-ketoacyl synthase, C-terminal domain LK04_RS11555 PF07977 FabA-like domain LK04_RS11560 PF02801 Beta-ketoacyl synthase, C-terminal domain LK04_RS11560 PF00109 Beta-ketoacyl synthase, N-terminal domain LK04_RS11590 PF07977 FabA-like domain LK04_RS11595 PF00501 AMP-binding enzyme LK04_RS11595 PF13193 AMP-binding enzyme C-terminal domain LK04_RS11605 PF00550 Phosphopantetheine attachment site LK04_RS11610 PF00550 Phosphopantetheine attachment site LK04_RS11630 PF02321 Outer membrane efflux protein LK04_RS11635 PF13533 Biotin-lipoyl like LK04_RS11650 PF10798 Biofilm development protein YmgB/AriR LK04_RS11655 PF01740 STAS domain LK04_RS11655 PF00916 Sulfate permease family LK04_RS11675 PF01066 CDP-alcohol phosphatidyltransferase LK04_RS11680 PF08459 UvrC Helix-hairpin-helix N-terminal LK04_RS11680 PF02151 UvrB/uvrC motif LK04_RS11680 PF01541 GIY-YIG catalytic domain LK04_RS11685 PF00196 Bacterial regulatory proteins, luxR family LK04_RS11685 PF00072 Response regulator receiver domain LK04_RS11690 PF10769 Protein of unknown function (DUF2594) LK04_RS11695 PF00765 Autoinducer synthase LK04_RS11700 PF00196 Bacterial regulatory proteins, luxR family LK04_RS11700 PF03472 Autoinducer binding domain LK04_RS11715 PF00324 Amino acid permease LK04_RS11725 PF00440 Bacterial regulatory proteins, tetR family LK04_RS11725 PF08362 YcdC-like protein, C-terminal region LK04_RS11730 PF00296 Luciferase-like monooxygenase LK04_RS11735 PF00857 Isochorismatase family LK04_RS11740 PF01042 Endoribonuclease L-PSP LK04_RS11745 PF00561 alpha/beta hydrolase fold LK04_RS11750 PF01613 Flavin reductase like domain LK04_RS11755 PF00860 Permease family LK04_RS11770 PF03358 NADPH-dependent FMN reductase LK04_RS11775 PF13993 YccJ-like protein LK04_RS11780 PF00171 Aldehyde dehydrogenase family LK04_RS11785 PF00328 Histidine phosphatase superfamily (branch 2) LK04_RS11800 PF01027 Inhibitor of apoptosis-promoting Bax1 LK04_RS11805 PF04358 DsrC like protein LK04_RS11810 PF00708 Acylphosphatase LK04_RS11815 PF17785 PUA-like domain LK04_RS11815 PF10672 S-adenosylmethionine-dependent methyltransferase LK04_RS11820 PF08755 Hemimethylated DNA-binding protein YccV like LK04_RS11825 PF13380 CoA binding domain LK04_RS11830 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LK04_RS11835 PF02142 MGS-like domain LK04_RS11840 PF13361 UvrD-like helicase C-terminal domain LK04_RS11840 PF00580 UvrD/REP helicase N-terminal domain LK04_RS11840 PF12462 DNA helicase IV / RNA helicase N terminal LK04_RS11845 PF03733 Inner membrane component domain LK04_RS11850 PF12805 FUSC-like inner membrane protein yccS LK04_RS11855 PF04993 TfoX N-terminal domain LK04_RS11855 PF04994 TfoX C-terminal domain LK04_RS11860 PF03846 Cell division inhibitor SulA LK04_RS11865 PF00691 OmpA family LK04_RS11865 PF01389 OmpA-like transmembrane domain LK04_RS11870 PF17414 MatP C-terminal ribbon-helix-helix domain LK04_RS11870 PF06303 MatP N-terminal domain LK04_RS11875 PF05362 Lon protease (S16) C-terminal proteolytic domain LK04_RS11875 PF13654 AAA domain LK04_RS11880 PF07977 FabA-like domain LK04_RS11885 PF03886 ABC-type transport auxiliary lipoprotein component LK04_RS11890 PF02470 MlaD protein LK04_RS11895 PF04403 Paraquat-inducible protein A LK04_RS11900 PF12848 ABC transporter LK04_RS11900 PF16326 ABC transporter C-terminal domain LK04_RS11900 PF00005 ABC transporter LK04_RS11905 PF10672 S-adenosylmethionine-dependent methyltransferase LK04_RS11905 PF02926 THUMP domain LK04_RS11905 PF01170 Putative RNA methylase family UPF0020 LK04_RS11910 PF00111 2Fe-2S iron-sulfur cluster binding domain LK04_RS11910 PF03473 MOSC domain LK04_RS11910 PF03476 MOSC N-terminal beta barrel domain LK04_RS11915 PF07126 Cell-division protein ZapC LK04_RS11920 PF01180 Dihydroorotate dehydrogenase LK04_RS11925 PF00535 Glycosyl transferase family 2 LK04_RS11935 PF00535 Glycosyl transferase family 2 LK04_RS11940 PF03358 NADPH-dependent FMN reductase LK04_RS11945 PF09084 NMT1/THI5 like LK04_RS11950 PF00296 Luciferase-like monooxygenase LK04_RS11955 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS11960 PF00005 ABC transporter LK04_RS11965 PF11940 Domain of unknown function (DUF3458) Ig-like fold LK04_RS11965 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LK04_RS11965 PF01433 Peptidase family M1 domain LK04_RS11970 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LK04_RS11970 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LK04_RS11975 PF00152 tRNA synthetases class II (D, K and N) LK04_RS11975 PF01336 OB-fold nucleic acid binding domain LK04_RS11980 PF00267 Gram-negative porin LK04_RS11985 PF00155 Aminotransferase class I and II LK04_RS11990 PF00753 Metallo-beta-lactamase superfamily LK04_RS11995 PF05951 Bacterial protein of unknown function (DUF882) LK04_RS12000 PF03734 L,D-transpeptidase catalytic domain LK04_RS12000 PF01471 Putative peptidoglycan binding domain LK04_RS12005 PF16330 MukB hinge domain LK04_RS12005 PF04310 MukB N-terminal LK04_RS12010 PF04288 MukE-like family LK04_RS12015 PF17193 MukF C-terminal domain LK04_RS12015 PF03882 MukF winged-helix domain LK04_RS12015 PF17192 MukF middle domain LK04_RS12020 PF13847 Methyltransferase domain LK04_RS12025 PF02698 DUF218 domain LK04_RS12030 PF01636 Phosphotransferase enzyme family LK04_RS12035 PF02348 Cytidylyltransferase LK04_RS12040 PF03966 Trm112p-like protein LK04_RS12045 PF06224 Winged helix DNA-binding domain LK04_RS12050 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LK04_RS12055 PF00664 ABC transporter transmembrane region LK04_RS12055 PF00005 ABC transporter LK04_RS12060 PF03772 Competence protein LK04_RS12060 PF00753 Metallo-beta-lactamase superfamily LK04_RS12065 PF00216 Bacterial DNA-binding protein LK04_RS12070 PF00575 S1 RNA binding domain LK04_RS12075 PF02224 Cytidylate kinase LK04_RS12080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LK04_RS12085 PF00266 Aminotransferase class-V LK04_RS12095 PF18381 YcaO cyclodehydratase C-terminal domain LK04_RS12095 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LK04_RS12100 PF01226 Formate/nitrite transporter LK04_RS12105 PF02901 Pyruvate formate lyase-like LK04_RS12105 PF01228 Glycine radical LK04_RS12110 PF04055 Radical SAM superfamily LK04_RS12115 PF07690 Major Facilitator Superfamily LK04_RS12120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LK04_RS12120 PF02403 Seryl-tRNA synthetase N-terminal domain LK04_RS12125 PF00004 ATPase family associated with various cellular activities (AAA) LK04_RS12125 PF12002 MgsA AAA+ ATPase C terminal LK04_RS12125 PF16193 AAA C-terminal domain LK04_RS12130 PF03548 Outer membrane lipoprotein carrier protein LolA LK04_RS12135 PF01580 FtsK/SpoIIIE family LK04_RS12135 PF09397 Ftsk gamma domain LK04_RS12135 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LK04_RS12135 PF17854 FtsK alpha domain LK04_RS12140 PF01037 Lrp/AsnC ligand binding domain LK04_RS12145 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS12150 PF00664 ABC transporter transmembrane region LK04_RS12150 PF00005 ABC transporter LK04_RS12155 PF00664 ABC transporter transmembrane region LK04_RS12155 PF00005 ABC transporter LK04_RS12160 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LK04_RS12165 PF01176 Translation initiation factor 1A / IF-1 LK04_RS12170 PF10431 C-terminal, D2-small domain, of ClpB protein LK04_RS12170 PF02861 Clp amino terminal domain, pathogenicity island component LK04_RS12170 PF07724 AAA domain (Cdc48 subfamily) LK04_RS12170 PF00004 ATPase family associated with various cellular activities (AAA) LK04_RS12170 PF17871 AAA lid domain LK04_RS12175 PF02617 ATP-dependent Clp protease adaptor protein ClpS LK04_RS12180 PF00313 'Cold-shock' DNA-binding domain LK04_RS12185 PF11398 Protein of unknown function (DUF2813) LK04_RS12190 PF03956 Lysine exporter LysO LK04_RS12195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LK04_RS12195 PF00205 Thiamine pyrophosphate enzyme, central domain LK04_RS12195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LK04_RS12200 PF01212 Beta-eliminating lyase LK04_RS12205 PF01510 N-acetylmuramoyl-L-alanine amidase LK04_RS12210 PF01906 Putative heavy-metal-binding LK04_RS12215 PF12883 Protein of unknown function (DUF3828) LK04_RS12220 PF00005 ABC transporter LK04_RS12225 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS12230 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12235 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12240 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS12245 PF05958 tRNA (Uracil-5-)-methyltransferase LK04_RS12250 PF10767 Protein of unknown function (DUF2593) LK04_RS12255 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12260 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12265 PF00005 ABC transporter LK04_RS12265 PF08402 TOBE domain LK04_RS12270 PF13416 Bacterial extracellular solute-binding protein LK04_RS12275 PF10722 Putative bacterial sensory transduction regulator LK04_RS12280 PF18030 RimK PreATP-grasp domain LK04_RS12280 PF08443 RimK-like ATP-grasp domain LK04_RS12285 PF00881 Nitroreductase family LK04_RS12295 PF00462 Glutaredoxin LK04_RS12305 PF06826 Predicted Permease Membrane Region LK04_RS12305 PF02080 TrkA-C domain LK04_RS12315 PF01569 PAP2 superfamily LK04_RS12320 PF00768 D-alanyl-D-alanine carboxypeptidase LK04_RS12320 PF07943 Penicillin-binding protein 5, C-terminal domain LK04_RS12330 PF07995 Glucose / Sorbosone dehydrogenase LK04_RS12335 PF11769 Protein of unknown function (DUF3313) LK04_RS12340 PF00484 Carbonic anhydrase LK04_RS12345 PF18693 TRAM domain LK04_RS12345 PF00919 Uncharacterized protein family UPF0004 LK04_RS12345 PF04055 Radical SAM superfamily LK04_RS12355 PF00672 HAMP domain LK04_RS12355 PF02203 Tar ligand binding domain homologue LK04_RS12355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS12360 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12360 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS12365 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS12375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS12375 PF00005 ABC transporter LK04_RS12380 PF01112 Asparaginase LK04_RS12385 PF03453 MoeA N-terminal region (domain I and II) LK04_RS12385 PF00994 Probable molybdopterin binding domain LK04_RS12385 PF03454 MoeA C-terminal region (domain IV) LK04_RS12390 PF00899 ThiF family LK04_RS12395 PF12848 ABC transporter LK04_RS12395 PF00005 ABC transporter LK04_RS12400 PF00816 H-NS histone family LK04_RS12410 PF02321 Outer membrane efflux protein LK04_RS12415 PF07690 Major Facilitator Superfamily LK04_RS12420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LK04_RS12420 PF00529 HlyD membrane-fusion protein of T1SS LK04_RS12425 PF03600 Citrate transporter LK04_RS12430 PF01325 Iron dependent repressor, N-terminal DNA binding domain LK04_RS12430 PF02742 Iron dependent repressor, metal binding and dimerisation domain LK04_RS12445 PF00732 GMC oxidoreductase LK04_RS12445 PF05199 GMC oxidoreductase LK04_RS12450 PF00034 Cytochrome c LK04_RS12450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LK04_RS12455 PF13505 Outer membrane protein beta-barrel domain LK04_RS12465 PF00892 EamA-like transporter family LK04_RS12470 PF00210 Ferritin-like domain LK04_RS12475 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS12480 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12485 PF00005 ABC transporter LK04_RS12490 PF00924 Mechanosensitive ion channel LK04_RS12495 PF05971 RNA methyltransferase LK04_RS12500 PF01613 Flavin reductase like domain LK04_RS12505 PF00221 Aromatic amino acid lyase LK04_RS12510 PF00005 ABC transporter LK04_RS12515 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12520 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12525 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS12535 PF01979 Amidohydrolase family LK04_RS12540 PF01979 Amidohydrolase family LK04_RS12545 PF05962 HutD LK04_RS12550 PF00392 Bacterial regulatory proteins, gntR family LK04_RS12550 PF07702 UTRA domain LK04_RS12555 PF00221 Aromatic amino acid lyase LK04_RS12560 PF01175 Urocanase Rossmann-like domain LK04_RS12560 PF17392 Urocanase C-terminal domain LK04_RS12560 PF17391 Urocanase N-terminal domain LK04_RS12565 PF01546 Peptidase family M20/M25/M40 LK04_RS12565 PF07687 Peptidase dimerisation domain LK04_RS12570 PF02885 Glycosyl transferase family, helical bundle domain LK04_RS12575 PF13307 Helicase C-terminal domain LK04_RS12575 PF06733 DEAD_2 LK04_RS12580 PF03466 LysR substrate binding domain LK04_RS12580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS12585 PF00491 Arginase family LK04_RS12590 PF00465 Iron-containing alcohol dehydrogenase LK04_RS12600 PF01522 Polysaccharide deacetylase LK04_RS12610 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS12615 PF00005 ABC transporter LK04_RS12620 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12625 PF14698 Argininosuccinate lyase C-terminal LK04_RS12625 PF00206 Lyase LK04_RS12630 PF03466 LysR substrate binding domain LK04_RS12630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS12645 PF13411 MerR HTH family regulatory protein LK04_RS12650 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12655 PF00005 ABC transporter LK04_RS12660 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12665 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LK04_RS12670 PF00083 Sugar (and other) transporter LK04_RS12675 PF00293 NUDIX domain LK04_RS12690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS12690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LK04_RS12695 PF00356 Bacterial regulatory proteins, lacI family LK04_RS12700 PF00672 HAMP domain LK04_RS12700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS12700 PF02743 Cache domain LK04_RS12720 PF01915 Glycosyl hydrolase family 3 C-terminal domain LK04_RS12720 PF00933 Glycosyl hydrolase family 3 N terminal domain LK04_RS12720 PF14310 Fibronectin type III-like domain LK04_RS12725 PF01565 FAD binding domain LK04_RS12725 PF09330 D-lactate dehydrogenase, membrane binding LK04_RS12730 PF12794 Mechanosensitive ion channel inner membrane domain 1 LK04_RS12730 PF12795 Mechanosensitive ion channel porin domain LK04_RS12730 PF00924 Mechanosensitive ion channel LK04_RS12735 PF00768 D-alanyl-D-alanine carboxypeptidase LK04_RS12740 PF04893 Yip1 domain LK04_RS12745 PF09335 SNARE associated Golgi protein LK04_RS12755 PF00723 Glycosyl hydrolases family 15 LK04_RS12760 PF17969 L,D-transpeptidase C-terminal domain LK04_RS12760 PF03734 L,D-transpeptidase catalytic domain LK04_RS12770 PF01384 Phosphate transporter family LK04_RS12775 PF03976 Polyphosphate kinase 2 (PPK2) LK04_RS12780 PF07690 Major Facilitator Superfamily LK04_RS12790 PF01207 Dihydrouridine synthase (Dus) LK04_RS12795 PF00271 Helicase conserved C-terminal domain LK04_RS12795 PF00270 DEAD/DEAH box helicase LK04_RS12805 PF11076 Putative inner membrane protein YbhQ LK04_RS12810 PF03372 Endonuclease/Exonuclease/phosphatase family LK04_RS12815 PF13091 PLD-like domain LK04_RS12820 PF03706 Lysylphosphatidylglycerol synthase TM region LK04_RS12825 PF01027 Inhibitor of apoptosis-promoting Bax1 LK04_RS12830 PF07759 Protein of unknown function (DUF1615) LK04_RS12835 PF02391 MoaE protein LK04_RS12840 PF02597 ThiS family LK04_RS12845 PF01967 MoaC family LK04_RS12850 PF00994 Probable molybdopterin binding domain LK04_RS12855 PF06463 Molybdenum Cofactor Synthesis C LK04_RS12855 PF04055 Radical SAM superfamily LK04_RS12860 PF01933 Uncharacterised protein family UPF0052 LK04_RS12865 PF00271 Helicase conserved C-terminal domain LK04_RS12865 PF04851 Type III restriction enzyme, res subunit LK04_RS12865 PF02151 UvrB/uvrC motif LK04_RS12865 PF12344 Ultra-violet resistance protein B LK04_RS12865 PF17757 UvrB interaction domain LK04_RS12870 PF00005 ABC transporter LK04_RS12880 PF08241 Methyltransferase domain LK04_RS12885 PF00155 Aminotransferase class I and II LK04_RS12890 PF06968 Biotin and Thiamin Synthesis associated domain LK04_RS12890 PF04055 Radical SAM superfamily LK04_RS12895 PF00202 Aminotransferase class-III LK04_RS12900 PF01161 Phosphatidylethanolamine-binding protein LK04_RS12905 PF10282 Lactonase, 7-bladed beta-propeller LK04_RS12915 PF00005 ABC transporter LK04_RS12915 PF03459 TOBE domain LK04_RS12920 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS12930 PF03459 TOBE domain LK04_RS12930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS12935 PF00005 ABC transporter LK04_RS12940 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LK04_RS12940 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LK04_RS12945 PF08544 GHMP kinases C terminal LK04_RS12945 PF10509 Galactokinase galactose-binding signature LK04_RS12945 PF00288 GHMP kinases N terminal domain LK04_RS12950 PF01263 Aldose 1-epimerase LK04_RS12955 PF00300 Histidine phosphatase superfamily (branch 1) LK04_RS12960 PF00793 DAHP synthetase I family LK04_RS12965 PF13985 YbgS-like protein LK04_RS12970 PF00196 Bacterial regulatory proteins, luxR family LK04_RS12970 PF00072 Response regulator receiver domain LK04_RS12975 PF00989 PAS fold LK04_RS12975 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS12975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS12975 PF01627 Hpt domain LK04_RS12975 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS12975 PF00072 Response regulator receiver domain LK04_RS12980 PF01545 Cation efflux family LK04_RS12985 PF04973 Nicotinamide mononucleotide transporter LK04_RS12990 PF02445 Quinolinate synthetase A protein LK04_RS12995 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LK04_RS12995 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LK04_RS13000 PF12833 Helix-turn-helix domain LK04_RS13000 PF06029 AlkA N-terminal domain LK04_RS13000 PF02805 Metal binding domain of Ada LK04_RS13000 PF00730 HhH-GPD superfamily base excision DNA repair protein LK04_RS13020 PF13174 Tetratricopeptide repeat LK04_RS13020 PF16331 TolA binding protein trimerisation LK04_RS13025 PF00691 OmpA family LK04_RS13030 PF07676 WD40-like Beta Propeller Repeat LK04_RS13030 PF04052 TolB amino-terminal domain LK04_RS13035 PF06519 TolA C-terminal LK04_RS13040 PF02472 Biopolymer transport protein ExbD/TolR LK04_RS13045 PF01618 MotA/TolQ/ExbB proton channel family LK04_RS13050 PF03061 Thioesterase superfamily LK04_RS13055 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LK04_RS13060 PF08173 Membrane bound YbgT-like protein LK04_RS13065 PF02322 Cytochrome bd terminal oxidase subunit II LK04_RS13070 PF01654 Cytochrome bd terminal oxidase subunit I LK04_RS13080 PF00549 CoA-ligase LK04_RS13080 PF02629 CoA binding domain LK04_RS13085 PF08442 ATP-grasp domain LK04_RS13085 PF00549 CoA-ligase LK04_RS13090 PF00364 Biotin-requiring enzyme LK04_RS13090 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LK04_RS13090 PF02817 e3 binding domain LK04_RS13095 PF16078 2-oxoglutarate dehydrogenase N-terminus LK04_RS13095 PF16870 2-oxoglutarate dehydrogenase C-terminal LK04_RS13095 PF00676 Dehydrogenase E1 component LK04_RS13095 PF02779 Transketolase, pyrimidine binding domain LK04_RS13100 PF13085 2Fe-2S iron-sulfur cluster binding domain LK04_RS13105 PF00890 FAD binding domain LK04_RS13105 PF02910 Fumarate reductase flavoprotein C-term LK04_RS13110 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LK04_RS13115 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LK04_RS13120 PF00285 Citrate synthase, C-terminal domain LK04_RS13125 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LK04_RS13125 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LK04_RS13125 PF06827 Zinc finger found in FPG and IleRS LK04_RS13130 PF01470 Pyroglutamyl peptidase LK04_RS13145 PF03746 LamB/YcsF family LK04_RS13150 PF02626 Carboxyltransferase domain, subdomain A and B LK04_RS13155 PF02682 Carboxyltransferase domain, subdomain C and D LK04_RS13160 PF01784 NIF3 (NGG1p interacting factor 3) LK04_RS13165 PF03441 FAD binding domain of DNA photolyase LK04_RS13165 PF00875 DNA photolyase LK04_RS13170 PF08349 Protein of unknown function (DUF1722) LK04_RS13175 PF10725 Protein of unknown function (DUF2517) LK04_RS13180 PF00486 Transcriptional regulatory protein, C terminal LK04_RS13180 PF00072 Response regulator receiver domain LK04_RS13185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LK04_RS13185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LK04_RS13185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LK04_RS13185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LK04_RS13190 PF17206 SeqA protein N-terminal domain LK04_RS13190 PF03925 SeqA protein C-terminal domain LK04_RS13195 PF12697 Alpha/beta hydrolase family LK04_RS13200 PF01402 Ribbon-helix-helix protein, copG family LK04_RS13205 PF00258 Flavodoxin LK04_RS13210 PF01475 Ferric uptake regulator family LK04_RS13220 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LK04_RS13220 PF00749 tRNA synthetases class I (E and Q), catalytic domain LK04_RS13225 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LK04_RS13225 PF02378 Phosphotransferase system, EIIC LK04_RS13225 PF00367 phosphotransferase system, EIIB LK04_RS13230 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LK04_RS13235 PF01979 Amidohydrolase family LK04_RS13240 PF00480 ROK family LK04_RS13240 PF01047 MarR family LK04_RS13245 PF13344 Haloacid dehalogenase-like hydrolase LK04_RS13250 PF13537 Glutamine amidotransferase domain LK04_RS13250 PF00733 Asparagine synthase LK04_RS13295 PF01494 FAD binding domain LK04_RS13300 PF01938 TRAM domain LK04_RS13300 PF04055 Radical SAM superfamily LK04_RS13300 PF00919 Uncharacterized protein family UPF0004 LK04_RS13305 PF02562 PhoH-like protein LK04_RS13310 PF02130 Uncharacterized protein family UPF0054 LK04_RS13315 PF03471 Transporter associated domain LK04_RS13315 PF00571 CBS domain LK04_RS13320 PF00795 Carbon-nitrogen hydrolase LK04_RS13325 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS13330 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS13335 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS13340 PF00005 ABC transporter LK04_RS13345 PF07295 Zinc-ribbon containing domain LK04_RS13350 PF13603 Leucyl-tRNA synthetase, Domain 2 LK04_RS13350 PF00133 tRNA synthetases class I (I, L, M and V) LK04_RS13350 PF08264 Anticodon-binding domain of tRNA LK04_RS13355 PF04390 Lipopolysaccharide-assembly LK04_RS13360 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LK04_RS13360 PF06144 DNA polymerase III, delta subunit LK04_RS13365 PF01467 Cytidylyltransferase-like LK04_RS13375 PF02590 Predicted SPOUT methyltransferase LK04_RS13380 PF00905 Penicillin binding protein transpeptidase domain LK04_RS13380 PF03717 Penicillin-binding Protein dimerisation domain LK04_RS13385 PF01098 Cell cycle protein LK04_RS13390 PF03330 Lytic transglycolase LK04_RS13390 PF05036 Sporulation related domain LK04_RS13395 PF00768 D-alanyl-D-alanine carboxypeptidase LK04_RS13395 PF07943 Penicillin-binding protein 5, C-terminal domain LK04_RS13400 PF04359 Protein of unknown function (DUF493) LK04_RS13405 PF03099 Biotin/lipoate A/B protein ligase family LK04_RS13410 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LK04_RS13410 PF04055 Radical SAM superfamily LK04_RS13415 PF02416 mttA/Hcf106 family LK04_RS13420 PF00005 ABC transporter LK04_RS13425 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS13435 PF00795 Carbon-nitrogen hydrolase LK04_RS13440 PF09084 NMT1/THI5 like LK04_RS13455 PF00313 'Cold-shock' DNA-binding domain LK04_RS13460 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LK04_RS13475 PF02615 Malate/L-lactate dehydrogenase LK04_RS13480 PF02447 GntP family permease LK04_RS13485 PF00465 Iron-containing alcohol dehydrogenase LK04_RS13490 PF00672 HAMP domain LK04_RS13490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS13490 PF02203 Tar ligand binding domain homologue LK04_RS13505 PF06906 Protein of unknown function (DUF1272) LK04_RS13510 PF01594 AI-2E family transporter LK04_RS13515 PF01594 AI-2E family transporter LK04_RS13525 PF00196 Bacterial regulatory proteins, luxR family LK04_RS13525 PF00072 Response regulator receiver domain LK04_RS13530 PF00989 PAS fold LK04_RS13530 PF00497 Bacterial extracellular solute-binding proteins, family 3 LK04_RS13530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS13530 PF00072 Response regulator receiver domain LK04_RS13530 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS13530 PF01627 Hpt domain LK04_RS13535 PF00196 Bacterial regulatory proteins, luxR family LK04_RS13535 PF00072 Response regulator receiver domain LK04_RS13540 PF13091 PLD-like domain LK04_RS13540 PF13087 AAA domain LK04_RS13555 PF04717 Type VI secretion system, phage-baseplate injector LK04_RS13570 PF00782 Dual specificity phosphatase, catalytic domain LK04_RS13575 PF12146 Serine aminopeptidase, S33 LK04_RS13575 PF12147 Putative methyltransferase LK04_RS13590 PF01066 CDP-alcohol phosphatidyltransferase LK04_RS13605 PF07859 alpha/beta hydrolase fold LK04_RS13610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS13610 PF03466 LysR substrate binding domain LK04_RS13635 PF12161 HsdM N-terminal domain LK04_RS13635 PF02384 N-6 DNA Methylase LK04_RS13650 PF06711 Protein of unknown function (DUF1198) LK04_RS13655 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LK04_RS13655 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LK04_RS13665 PF01406 tRNA synthetases class I (C) catalytic domain LK04_RS13665 PF09190 DALR domain LK04_RS13670 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LK04_RS13675 PF12850 Calcineurin-like phosphoesterase superfamily domain LK04_RS13680 PF00731 AIR carboxylase LK04_RS13685 PF02222 ATP-grasp domain LK04_RS13685 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LK04_RS13695 PF00005 ABC transporter LK04_RS13700 PF13472 GDSL-like Lipase/Acylhydrolase family LK04_RS13705 PF00106 short chain dehydrogenase LK04_RS13710 PF00085 Thioredoxin LK04_RS13715 PF16200 C-terminal region of band_7 LK04_RS13715 PF01145 SPFH domain / Band 7 family LK04_RS13720 PF01957 NfeD-like C-terminal, partner-binding LK04_RS13725 PF13411 MerR HTH family regulatory protein LK04_RS13730 PF00403 Heavy-metal-associated domain LK04_RS13735 PF01963 TraB family LK04_RS13740 PF04073 Aminoacyl-tRNA editing domain LK04_RS13745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS13745 PF03466 LysR substrate binding domain LK04_RS13755 PF02872 5'-nucleotidase, C-terminal domain LK04_RS13755 PF00149 Calcineurin-like phosphoesterase LK04_RS13760 PF07690 Major Facilitator Superfamily LK04_RS13765 PF00999 Sodium/hydrogen exchanger family LK04_RS13765 PF02254 TrkA-N domain LK04_RS13770 PF00294 pfkB family carbohydrate kinase LK04_RS13775 PF00762 Ferrochelatase LK04_RS13780 PF05191 Adenylate kinase, active site lid LK04_RS13790 PF03466 LysR substrate binding domain LK04_RS13790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS13795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS13795 PF00183 Hsp90 protein LK04_RS13800 PF02132 RecR protein LK04_RS13800 PF13662 Toprim domain LK04_RS13805 PF02575 YbaB/EbfC DNA-binding family LK04_RS13810 PF12170 DNA polymerase III tau subunit V interacting with alpha LK04_RS13810 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LK04_RS13810 PF12169 DNA polymerase III subunits gamma and tau domain III LK04_RS13815 PF00156 Phosphoribosyl transferase domain LK04_RS13820 PF04304 Protein of unknown function (DUF454) LK04_RS13830 PF04226 Transglycosylase associated protein LK04_RS13835 PF00440 Bacterial regulatory proteins, tetR family LK04_RS13835 PF08361 MAATS-type transcriptional repressor, C-terminal region LK04_RS13840 PF00529 HlyD membrane-fusion protein of T1SS LK04_RS13840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LK04_RS13845 PF00873 AcrB/AcrD/AcrF family LK04_RS13850 PF01197 Ribosomal protein L31 LK04_RS13855 PF01297 Zinc-uptake complex component A periplasmic LK04_RS13860 PF00950 ABC 3 transport family LK04_RS13865 PF00005 ABC transporter LK04_RS13875 PF10757 Biofilm formation regulator YbaJ LK04_RS13880 PF05321 Haemolysin expression modulating protein LK04_RS13890 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LK04_RS13895 PF09619 Type III secretion system lipoprotein chaperone (YscW) LK04_RS13905 PF00909 Ammonium Transporter Family LK04_RS13910 PF00543 Nitrogen regulatory protein P-II LK04_RS13915 PF00005 ABC transporter LK04_RS13915 PF00664 ABC transporter transmembrane region LK04_RS13920 PF00005 ABC transporter LK04_RS13920 PF00664 ABC transporter transmembrane region LK04_RS13925 PF01037 Lrp/AsnC ligand binding domain LK04_RS13925 PF13404 AsnC-type helix-turn-helix domain LK04_RS13940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS13940 PF12793 Sugar transport-related sRNA regulator N-term LK04_RS13945 PF06508 Queuosine biosynthesis protein QueC LK04_RS13960 PF13145 PPIC-type PPIASE domain LK04_RS13965 PF00216 Bacterial DNA-binding protein LK04_RS13970 PF00004 ATPase family associated with various cellular activities (AAA) LK04_RS13970 PF05362 Lon protease (S16) C-terminal proteolytic domain LK04_RS13970 PF02190 ATP-dependent protease La (LON) substrate-binding domain LK04_RS13975 PF06689 ClpX C4-type zinc finger LK04_RS13975 PF10431 C-terminal, D2-small domain, of ClpB protein LK04_RS13975 PF07724 AAA domain (Cdc48 subfamily) LK04_RS13980 PF00574 Clp protease LK04_RS13985 PF05698 Bacterial trigger factor protein (TF) C-terminus LK04_RS13985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LK04_RS13985 PF05697 Bacterial trigger factor protein (TF) LK04_RS13990 PF01722 BolA-like protein LK04_RS13995 PF03923 Uncharacterized lipoprotein LK04_RS13995 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LK04_RS14000 PF07690 Major Facilitator Superfamily LK04_RS14005 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LK04_RS14005 PF06481 COX Aromatic Rich Motif LK04_RS14010 PF00115 Cytochrome C and Quinol oxidase polypeptide I LK04_RS14015 PF00510 Cytochrome c oxidase subunit III LK04_RS14020 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LK04_RS14025 PF01040 UbiA prenyltransferase family LK04_RS14030 PF07690 Major Facilitator Superfamily LK04_RS14035 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS14035 PF00107 Zinc-binding dehydrogenase LK04_RS14040 PF00171 Aldehyde dehydrogenase family LK04_RS14045 PF01590 GAF domain LK04_RS14045 PF00158 Sigma-54 interaction domain LK04_RS14045 PF02954 Bacterial regulatory protein, Fis family LK04_RS14050 PF04461 Protein of unknown function (DUF520) LK04_RS14055 PF02558 Ketopantoate reductase PanE/ApbA LK04_RS14055 PF08546 Ketopantoate reductase PanE/ApbA C terminal LK04_RS14060 PF01965 DJ-1/PfpI family LK04_RS14065 PF02926 THUMP domain LK04_RS14065 PF02568 Thiamine biosynthesis protein (ThiI) LK04_RS14070 PF02609 Exonuclease VII small subunit LK04_RS14075 PF00348 Polyprenyl synthetase LK04_RS14080 PF02779 Transketolase, pyrimidine binding domain LK04_RS14080 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LK04_RS14080 PF02780 Transketolase, C-terminal domain LK04_RS14085 PF00248 Aldo/keto reductase family LK04_RS14090 PF04608 Phosphatidylglycerophosphatase A LK04_RS14095 PF02769 AIR synthase related protein, C-terminal domain LK04_RS14095 PF00586 AIR synthase related protein, N-terminal domain LK04_RS14100 PF01029 NusB family LK04_RS14105 PF00885 6,7-dimethyl-8-ribityllumazine synthase LK04_RS14110 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LK04_RS14110 PF01872 RibD C-terminal domain LK04_RS14115 PF03477 ATP cone domain LK04_RS14120 PF04972 BON domain LK04_RS14120 PF01476 LysM domain LK04_RS14125 PF11622 Protein of unknown function (DUF3251) LK04_RS14130 PF07549 SecD/SecF GG Motif LK04_RS14130 PF02355 Protein export membrane protein LK04_RS14135 PF02355 Protein export membrane protein LK04_RS14135 PF13721 SecD export protein N-terminal TM region LK04_RS14135 PF07549 SecD/SecF GG Motif LK04_RS14140 PF02699 Preprotein translocase subunit LK04_RS14145 PF01702 Queuine tRNA-ribosyltransferase LK04_RS14150 PF02547 Queuosine biosynthesis protein LK04_RS14155 PF04336 Acyl carrier protein phosphodiesterase LK04_RS14160 PF00459 Inositol monophosphatase family LK04_RS14165 PF00328 Histidine phosphatase superfamily (branch 2) LK04_RS14170 PF01757 Acyltransferase family LK04_RS14175 PF00324 Amino acid permease LK04_RS14180 PF05525 Branched-chain amino acid transport protein LK04_RS14185 PF01717 Cobalamin-independent synthase, Catalytic domain LK04_RS14190 PF12849 PBP superfamily domain LK04_RS14195 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS14195 PF00989 PAS fold LK04_RS14195 PF11808 Phosphate regulon sensor protein PhoR LK04_RS14195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS14200 PF00072 Response regulator receiver domain LK04_RS14200 PF00486 Transcriptional regulatory protein, C terminal LK04_RS14205 PF12320 Type 5 capsule protein repressor C-terminal domain LK04_RS14205 PF00149 Calcineurin-like phosphoesterase LK04_RS14210 PF13476 AAA domain LK04_RS14220 PF12833 Helix-turn-helix domain LK04_RS14220 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LK04_RS14235 PF00480 ROK family LK04_RS14240 PF04381 Putative exonuclease, RdgC LK04_RS14245 PF06865 Pyrimidine/purine nucleoside phosphorylase LK04_RS14250 PF07302 AroM protein LK04_RS14265 PF01614 Bacterial transcriptional regulator LK04_RS14265 PF09339 IclR helix-turn-helix domain LK04_RS14270 PF16362 YaiA protein LK04_RS14275 PF01202 Shikimate kinase LK04_RS14280 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) LK04_RS14285 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LK04_RS14290 PF14748 Pyrroline-5-carboxylate reductase dimerisation LK04_RS14290 PF03807 NADP oxidoreductase coenzyme F420-dependent LK04_RS14295 PF14759 Reductase C-terminal LK04_RS14295 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS14305 PF07769 psiF repeat LK04_RS14310 PF10796 Sigma-S stabilisation anti-adaptor protein LK04_RS14315 PF02929 Beta galactosidase small chain LK04_RS14315 PF16353 Domain of unknown function(DUF4981) LK04_RS14315 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LK04_RS14315 PF00703 Glycosyl hydrolases family 2 LK04_RS14315 PF02837 Glycosyl hydrolases family 2, sugar binding domain LK04_RS14320 PF00083 Sugar (and other) transporter LK04_RS14320 PF07690 Major Facilitator Superfamily LK04_RS14340 PF03707 Bacterial signalling protein N terminal repeat LK04_RS14340 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS14340 PF00563 EAL domain LK04_RS14340 PF13188 PAS domain LK04_RS14350 PF00356 Bacterial regulatory proteins, lacI family LK04_RS14360 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LK04_RS14365 PF02378 Phosphotransferase system, EIIC LK04_RS14370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LK04_RS14385 PF02566 OsmC-like protein LK04_RS14390 PF01070 FMN-dependent dehydrogenase LK04_RS14395 PF07729 FCD domain LK04_RS14395 PF00392 Bacterial regulatory proteins, gntR family LK04_RS14400 PF02652 L-lactate permease LK04_RS14405 PF07690 Major Facilitator Superfamily LK04_RS14410 PF03466 LysR substrate binding domain LK04_RS14410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS14415 PF07969 Amidohydrolase family LK04_RS14430 PF03880 DbpA RNA binding domain LK04_RS14430 PF00270 DEAD/DEAH box helicase LK04_RS14430 PF00271 Helicase conserved C-terminal domain LK04_RS14435 PF00072 Response regulator receiver domain LK04_RS14435 PF01584 CheW-like domain LK04_RS14440 PF00672 HAMP domain LK04_RS14440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS14440 PF02203 Tar ligand binding domain homologue LK04_RS14450 PF00535 Glycosyl transferase family 2 LK04_RS14460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS14460 PF03466 LysR substrate binding domain LK04_RS14465 PF00171 Aldehyde dehydrogenase family LK04_RS14470 PF17991 Thioredoxin like C-terminal domain LK04_RS14470 PF02683 Cytochrome C biogenesis protein transmembrane region LK04_RS14470 PF00578 AhpC/TSA family LK04_RS14475 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS14475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS14475 PF00672 HAMP domain LK04_RS14480 PF00486 Transcriptional regulatory protein, C terminal LK04_RS14480 PF00072 Response regulator receiver domain LK04_RS14490 PF07690 Major Facilitator Superfamily LK04_RS14495 PF05336 L-rhamnose mutarotase LK04_RS14510 PF13378 Enolase C-terminal domain-like LK04_RS14510 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LK04_RS14515 PF01557 Fumarylacetoacetate (FAA) hydrolase family LK04_RS14525 PF07729 FCD domain LK04_RS14525 PF00392 Bacterial regulatory proteins, gntR family LK04_RS14530 PF09008 Head binding LK04_RS14560 PF00171 Aldehyde dehydrogenase family LK04_RS14565 PF00696 Amino acid kinase family LK04_RS14565 PF01472 PUA domain LK04_RS14570 PF00267 Gram-negative porin LK04_RS14575 PF07417 Sigma factor-binding transcriptional regulator Crl LK04_RS14580 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LK04_RS14585 PF00156 Phosphoribosyl transferase domain LK04_RS14590 PF07687 Peptidase dimerisation domain LK04_RS14590 PF01546 Peptidase family M20/M25/M40 LK04_RS14595 PF00005 ABC transporter LK04_RS14600 PF02653 Branched-chain amino acid transport system / permease component LK04_RS14610 PF11798 IMS family HHH motif LK04_RS14610 PF00817 impB/mucB/samB family LK04_RS14610 PF11799 impB/mucB/samB family C-terminal domain LK04_RS14615 PF03734 L,D-transpeptidase catalytic domain LK04_RS14620 PF13230 Glutamine amidotransferases class-II LK04_RS14625 PF13580 SIS domain LK04_RS14630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LK04_RS14630 PF02770 Acyl-CoA dehydrogenase, middle domain LK04_RS14630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LK04_RS14630 PF09317 Domain of unknown function (DUF1974) LK04_RS14635 PF01636 Phosphotransferase enzyme family LK04_RS14640 PF01008 Initiation factor 2 subunit family LK04_RS14645 PF03079 ARD/ARD' family LK04_RS14655 PF00596 Class II Aldolase and Adducin N-terminal domain LK04_RS14660 PF00155 Aminotransferase class I and II LK04_RS14665 PF00795 Carbon-nitrogen hydrolase LK04_RS14670 PF00141 Peroxidase LK04_RS14675 PF00576 HIUase/Transthyretin family LK04_RS14685 PF07687 Peptidase dimerisation domain LK04_RS14685 PF01546 Peptidase family M20/M25/M40 LK04_RS14690 PF00266 Aminotransferase class-V LK04_RS14695 PF00005 ABC transporter LK04_RS14700 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS14705 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS14730 PF01425 Amidase LK04_RS14740 PF01522 Polysaccharide deacetylase LK04_RS14745 PF01177 Asp/Glu/Hydantoin racemase LK04_RS14755 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LK04_RS14765 PF00929 Exonuclease LK04_RS14770 PF00075 RNase H LK04_RS14775 PF08241 Methyltransferase domain LK04_RS14780 PF16123 Hydroxyacylglutathione hydrolase C-terminus LK04_RS14780 PF00753 Metallo-beta-lactamase superfamily LK04_RS14785 PF01464 Transglycosylase SLT domain LK04_RS14785 PF01476 LysM domain LK04_RS14790 PF03372 Endonuclease/Exonuclease/phosphatase family LK04_RS14795 PF07690 Major Facilitator Superfamily LK04_RS14800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS14800 PF03466 LysR substrate binding domain LK04_RS14805 PF00248 Aldo/keto reductase family LK04_RS14840 PF09383 NIL domain LK04_RS14840 PF00005 ABC transporter LK04_RS14845 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS14850 PF03180 NLPA lipoprotein LK04_RS14855 PF16358 RcsF lipoprotein LK04_RS14860 PF18389 TrmO C-terminal domain LK04_RS14860 PF01980 tRNA-methyltransferase O LK04_RS14865 PF04073 Aminoacyl-tRNA editing domain LK04_RS14865 PF03129 Anticodon binding domain LK04_RS14865 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LK04_RS14870 PF00472 RF-1 domain LK04_RS14875 PF06786 Uncharacterised protein family (UPF0253) LK04_RS14880 PF07073 Modulator of Rho-dependent transcription termination (ROF) LK04_RS14885 PF00034 Cytochrome c LK04_RS14890 PF09179 TilS substrate binding domain LK04_RS14890 PF01171 PP-loop family LK04_RS14890 PF11734 TilS substrate C-terminal domain LK04_RS14895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LK04_RS14900 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LK04_RS14900 PF01276 Orn/Lys/Arg decarboxylase, major domain LK04_RS14900 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LK04_RS14905 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LK04_RS14910 PF07733 Bacterial DNA polymerase III alpha NTPase domain LK04_RS14910 PF02811 PHP domain LK04_RS14910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LK04_RS14910 PF14579 Helix-hairpin-helix motif LK04_RS14910 PF01336 OB-fold nucleic acid binding domain LK04_RS14915 PF01351 Ribonuclease HII LK04_RS14920 PF02684 Lipid-A-disaccharide synthetase LK04_RS14925 PF00132 Bacterial transferase hexapeptide (six repeats) LK04_RS14925 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LK04_RS14930 PF07977 FabA-like domain LK04_RS14935 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LK04_RS14935 PF00132 Bacterial transferase hexapeptide (six repeats) LK04_RS14940 PF03938 Outer membrane protein (OmpH-like) LK04_RS14945 PF01103 Surface antigen LK04_RS14945 PF07244 Surface antigen variable number repeat LK04_RS14950 PF17820 PDZ domain LK04_RS14950 PF02163 Peptidase family M50 LK04_RS14960 PF01255 Putative undecaprenyl diphosphate synthase LK04_RS14965 PF13288 DXP reductoisomerase C-terminal domain LK04_RS14965 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LK04_RS14965 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LK04_RS14970 PF01765 Ribosome recycling factor LK04_RS14975 PF00696 Amino acid kinase family LK04_RS14980 PF00889 Elongation factor TS LK04_RS14985 PF00318 Ribosomal protein S2 LK04_RS14990 PF00557 Metallopeptidase family M24 LK04_RS14995 PF01966 HD domain LK04_RS14995 PF01909 Nucleotidyltransferase domain LK04_RS14995 PF01842 ACT domain LK04_RS14995 PF08335 GlnD PII-uridylyltransferase LK04_RS15000 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LK04_RS15000 PF14602 Hexapeptide repeat of succinyl-transferase LK04_RS15000 PF00132 Bacterial transferase hexapeptide (six repeats) LK04_RS15005 PF11944 Protein of unknown function (DUF3461) LK04_RS15010 PF07729 FCD domain LK04_RS15010 PF00392 Bacterial regulatory proteins, gntR family LK04_RS15020 PF13556 PucR C-terminal helix-turn-helix domain LK04_RS15020 PF17853 GGDEF-like domain LK04_RS15020 PF05651 Putative sugar diacid recognition LK04_RS15025 PF00595 PDZ domain LK04_RS15030 PF13286 Phosphohydrolase-associated domain LK04_RS15030 PF01966 HD domain LK04_RS15035 PF01048 Phosphorylase superfamily LK04_RS15040 PF01497 Periplasmic binding protein LK04_RS15050 PF01521 Iron-sulphur cluster biosynthesis LK04_RS15055 PF00202 Aminotransferase class-III LK04_RS15060 PF01032 FecCD transport family LK04_RS15065 PF01497 Periplasmic binding protein LK04_RS15070 PF00005 ABC transporter LK04_RS15075 PF00593 TonB dependent receptor LK04_RS15075 PF07715 TonB-dependent Receptor Plug Domain LK04_RS15080 PF00905 Penicillin binding protein transpeptidase domain LK04_RS15080 PF00912 Transglycosylase LK04_RS15080 PF14814 Bifunctional transglycosylase second domain LK04_RS15080 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal LK04_RS15085 PF08482 ATP-dependent helicase C-terminal LK04_RS15085 PF00271 Helicase conserved C-terminal domain LK04_RS15085 PF04408 Helicase associated domain (HA2) LK04_RS15085 PF00270 DEAD/DEAH box helicase LK04_RS15090 PF02834 LigT like Phosphoesterase LK04_RS15095 PF03749 Sugar fermentation stimulation protein RE domain LK04_RS15095 PF17746 SfsA N-terminal OB domain LK04_RS15100 PF01258 Prokaryotic dksA/traR C4-type zinc finger LK04_RS15105 PF00749 tRNA synthetases class I (E and Q), catalytic domain LK04_RS15110 PF01743 Poly A polymerase head domain LK04_RS15110 PF12626 Polymerase A arginine-rich C-terminus LK04_RS15110 PF12627 Probable RNA and SrmB- binding site of polymerase A LK04_RS15115 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LK04_RS15120 PF02548 Ketopantoate hydroxymethyltransferase LK04_RS15125 PF02569 Pantoate-beta-alanine ligase LK04_RS15130 PF02261 Aspartate decarboxylase LK04_RS15140 PF01061 ABC-2 type transporter LK04_RS15145 PF00005 ABC transporter LK04_RS15150 PF00156 Phosphoribosyl transferase domain LK04_RS15155 PF01053 Cys/Met metabolism PLP-dependent enzyme LK04_RS15160 PF00394 Multicopper oxidase LK04_RS15160 PF07731 Multicopper oxidase LK04_RS15160 PF10518 TAT (twin-arginine translocation) pathway signal sequence LK04_RS15160 PF07732 Multicopper oxidase LK04_RS15165 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LK04_RS15170 PF17284 Spermidine synthase tetramerisation domain LK04_RS15175 PF02675 S-adenosylmethionine decarboxylase LK04_RS15180 PF00455 DeoR C terminal sensor domain LK04_RS15180 PF08220 DeoR-like helix-turn-helix domain LK04_RS15185 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LK04_RS15190 PF17042 Nucleotide-binding C-terminal domain LK04_RS15190 PF07005 Sugar-binding N-terminal domain LK04_RS15195 PF00465 Iron-containing alcohol dehydrogenase LK04_RS15200 PF00701 Dihydrodipicolinate synthetase family LK04_RS15205 PF01842 ACT domain LK04_RS15205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LK04_RS15205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LK04_RS15210 PF07690 Major Facilitator Superfamily LK04_RS15215 PF07690 Major Facilitator Superfamily LK04_RS15225 PF06062 Uncharacterised protein family (UPF0231) LK04_RS15255 PF06434 Aconitate hydratase 2 N-terminus LK04_RS15255 PF11791 Aconitate B N-terminal domain LK04_RS15255 PF00330 Aconitase family (aconitate hydratase) LK04_RS15260 PF00248 Aldo/keto reductase family LK04_RS15265 PF03466 LysR substrate binding domain LK04_RS15265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS15270 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS15270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LK04_RS15275 PF02817 e3 binding domain LK04_RS15275 PF00364 Biotin-requiring enzyme LK04_RS15275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LK04_RS15280 PF00456 Transketolase, thiamine diphosphate binding domain LK04_RS15280 PF17831 Pyruvate dehydrogenase E1 component middle domain LK04_RS15285 PF00392 Bacterial regulatory proteins, gntR family LK04_RS15285 PF07729 FCD domain LK04_RS15295 PF00324 Amino acid permease LK04_RS15305 PF04616 Glycosyl hydrolases family 43 LK04_RS15305 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain LK04_RS15310 PF17113 Regulatory signalling modulator protein AmpE LK04_RS15315 PF01510 N-acetylmuramoyl-L-alanine amidase LK04_RS15320 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LK04_RS15320 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LK04_RS15325 PF07963 Prokaryotic N-terminal methylation motif LK04_RS15330 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LK04_RS15330 PF00437 Type II/IV secretion system protein LK04_RS15335 PF00482 Type II secretion system (T2SS), protein F LK04_RS15340 PF00478 IMP dehydrogenase / GMP reductase domain LK04_RS15345 PF01121 Dephospho-CoA kinase LK04_RS15350 PF07072 Cell division protein LK04_RS15355 PF03884 DNA gyrase inhibitor YacG LK04_RS15360 PF00293 NUDIX domain LK04_RS15365 PF01043 SecA preprotein cross-linking domain LK04_RS15365 PF07517 SecA DEAD-like domain LK04_RS15365 PF02810 SEC-C motif LK04_RS15365 PF07516 SecA Wing and Scaffold domain LK04_RS15370 PF06558 Secretion monitor precursor protein (SecM) LK04_RS15375 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LK04_RS15380 PF00091 Tubulin/FtsZ family, GTPase domain LK04_RS15380 PF12327 FtsZ family, C-terminal domain LK04_RS15385 PF02491 SHS2 domain inserted in FTSA LK04_RS15390 PF03799 Cell division protein FtsQ LK04_RS15390 PF08478 POTRA domain, FtsQ-type LK04_RS15395 PF01820 D-ala D-ala ligase N-terminus LK04_RS15395 PF07478 D-ala D-ala ligase C-terminus LK04_RS15400 PF02875 Mur ligase family, glutamate ligase domain LK04_RS15400 PF08245 Mur ligase middle domain LK04_RS15400 PF01225 Mur ligase family, catalytic domain LK04_RS15405 PF04101 Glycosyltransferase family 28 C-terminal domain LK04_RS15405 PF03033 Glycosyltransferase family 28 N-terminal domain LK04_RS15410 PF01098 Cell cycle protein LK04_RS15415 PF02875 Mur ligase family, glutamate ligase domain LK04_RS15415 PF08245 Mur ligase middle domain LK04_RS15420 PF00953 Glycosyl transferase family 4 LK04_RS15420 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LK04_RS15425 PF02875 Mur ligase family, glutamate ligase domain LK04_RS15425 PF08245 Mur ligase middle domain LK04_RS15425 PF01225 Mur ligase family, catalytic domain LK04_RS15430 PF08245 Mur ligase middle domain LK04_RS15430 PF02875 Mur ligase family, glutamate ligase domain LK04_RS15430 PF01225 Mur ligase family, catalytic domain LK04_RS15435 PF03717 Penicillin-binding Protein dimerisation domain LK04_RS15435 PF00905 Penicillin binding protein transpeptidase domain LK04_RS15440 PF04999 Cell division protein FtsL LK04_RS15445 PF01795 MraW methylase family LK04_RS15450 PF02381 MraZ protein, putative antitoxin-like LK04_RS15455 PF00356 Bacterial regulatory proteins, lacI family LK04_RS15455 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LK04_RS15460 PF10369 Small subunit of acetolactate synthase LK04_RS15465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LK04_RS15465 PF00205 Thiamine pyrophosphate enzyme, central domain LK04_RS15465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LK04_RS15470 PF00682 HMGL-like LK04_RS15470 PF08502 LeuA allosteric (dimerisation) domain LK04_RS15475 PF00180 Isocitrate/isopropylmalate dehydrogenase LK04_RS15480 PF00330 Aconitase family (aconitate hydratase) LK04_RS15485 PF00694 Aconitase C-terminal domain LK04_RS15490 PF07690 Major Facilitator Superfamily LK04_RS15495 PF12793 Sugar transport-related sRNA regulator N-term LK04_RS15495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS15505 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS15510 PF00005 ABC transporter LK04_RS15515 PF09335 SNARE associated Golgi protein LK04_RS15520 PF00136 DNA polymerase family B LK04_RS15520 PF03104 DNA polymerase family B, exonuclease domain LK04_RS15525 PF18337 RapA N-terminal Tudor like domain LK04_RS15525 PF18339 RapA N-terminal Tudor like domain 1 LK04_RS15525 PF00176 SNF2 family N-terminal domain LK04_RS15525 PF12137 RNA polymerase recycling family C-terminal LK04_RS15525 PF00271 Helicase conserved C-terminal domain LK04_RS15530 PF00849 RNA pseudouridylate synthase LK04_RS15535 PF00226 DnaJ domain LK04_RS15535 PF05099 Tellurite resistance protein TerB LK04_RS15540 PF04453 LPS transport system D LK04_RS15540 PF03968 OstA-like protein LK04_RS15545 PF00639 PPIC-type PPIASE domain LK04_RS15545 PF09312 SurA N-terminal domain LK04_RS15550 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LK04_RS15555 PF00398 Ribosomal RNA adenine dimethylase LK04_RS15560 PF04379 ApaG domain LK04_RS15565 PF00149 Calcineurin-like phosphoesterase LK04_RS15570 PF00186 Dihydrofolate reductase LK04_RS15580 PF02142 MGS-like domain LK04_RS15580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LK04_RS15580 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LK04_RS15585 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LK04_RS15585 PF00117 Glutamine amidotransferase class-I LK04_RS15590 PF05173 Dihydrodipicolinate reductase, C-terminus LK04_RS15590 PF01113 Dihydrodipicolinate reductase, N-terminus LK04_RS15595 PF02401 LytB protein LK04_RS15600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LK04_RS15605 PF01252 Signal peptidase (SPase) II LK04_RS15610 PF00133 tRNA synthetases class I (I, L, M and V) LK04_RS15610 PF08264 Anticodon-binding domain of tRNA LK04_RS15610 PF06827 Zinc finger found in FPG and IleRS LK04_RS15615 PF01687 Riboflavin kinase LK04_RS15615 PF06574 FAD synthetase LK04_RS15620 PF01649 Ribosomal protein S20 LK04_RS15625 PF03466 LysR substrate binding domain LK04_RS15625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS15630 PF06965 Na+/H+ antiporter 1 LK04_RS15635 PF00684 DnaJ central domain LK04_RS15635 PF01556 DnaJ C terminal domain LK04_RS15635 PF00226 DnaJ domain LK04_RS15640 PF00012 Hsp70 protein LK04_RS15645 PF07690 Major Facilitator Superfamily LK04_RS15650 PF00994 Probable molybdopterin binding domain LK04_RS15655 PF00923 Transaldolase/Fructose-6-phosphate aldolase LK04_RS15660 PF03883 Peroxide stress protein YaaA LK04_RS15695 PF03781 Sulfatase-modifying factor enzyme 1 LK04_RS15700 PF03781 Sulfatase-modifying factor enzyme 1 LK04_RS15700 PF00069 Protein kinase domain LK04_RS15705 PF03781 Sulfatase-modifying factor enzyme 1 LK04_RS15710 PF03781 Sulfatase-modifying factor enzyme 1 LK04_RS15735 PF13592 Winged helix-turn helix LK04_RS15735 PF13358 DDE superfamily endonuclease LK04_RS15765 PF13296 Putative type VI secretion system Rhs element Vgr LK04_RS15765 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LK04_RS15765 PF04717 Type VI secretion system, phage-baseplate injector LK04_RS15770 PF00004 ATPase family associated with various cellular activities (AAA) LK04_RS15770 PF17871 AAA lid domain LK04_RS15770 PF07724 AAA domain (Cdc48 subfamily) LK04_RS15770 PF10431 C-terminal, D2-small domain, of ClpB protein LK04_RS15795 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LK04_RS15805 PF00291 Pyridoxal-phosphate dependent enzyme LK04_RS15805 PF14821 Threonine synthase N terminus LK04_RS15810 PF08544 GHMP kinases C terminal LK04_RS15810 PF00288 GHMP kinases N terminal domain LK04_RS15815 PF13840 ACT domain LK04_RS15815 PF00696 Amino acid kinase family LK04_RS15815 PF01842 ACT domain LK04_RS15815 PF00742 Homoserine dehydrogenase LK04_RS15815 PF03447 Homoserine dehydrogenase, NAD binding domain LK04_RS15820 PF00588 SpoU rRNA Methylase family LK04_RS15825 PF00072 Response regulator receiver domain LK04_RS15825 PF00486 Transcriptional regulatory protein, C terminal LK04_RS15830 PF05981 CreA protein LK04_RS15835 PF12833 Helix-turn-helix domain LK04_RS15835 PF06445 GyrI-like small molecule binding domain LK04_RS15840 PF00300 Histidine phosphatase superfamily (branch 1) LK04_RS15845 PF01931 Protein of unknown function DUF84 LK04_RS15850 PF01371 Trp repressor protein LK04_RS15855 PF14718 Soluble lytic murein transglycosylase L domain LK04_RS15855 PF01464 Transglycosylase SLT domain LK04_RS15860 PF13333 Integrase core domain LK04_RS15860 PF00665 Integrase core domain LK04_RS15860 PF13276 HTH-like domain LK04_RS15870 PF01425 Amidase LK04_RS15875 PF02785 Biotin carboxylase C-terminal domain LK04_RS15875 PF00289 Biotin carboxylase, N-terminal domain LK04_RS15875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LK04_RS15880 PF00392 Bacterial regulatory proteins, gntR family LK04_RS15880 PF07729 FCD domain LK04_RS15885 PF13458 Periplasmic binding protein LK04_RS15890 PF02653 Branched-chain amino acid transport system / permease component LK04_RS15900 PF12399 Branched-chain amino acid ATP-binding cassette transporter LK04_RS15900 PF00005 ABC transporter LK04_RS15905 PF00005 ABC transporter LK04_RS15910 PF02203 Tar ligand binding domain homologue LK04_RS15910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS15910 PF00672 HAMP domain LK04_RS15920 PF07690 Major Facilitator Superfamily LK04_RS15925 PF00294 pfkB family carbohydrate kinase LK04_RS15930 PF08220 DeoR-like helix-turn-helix domain LK04_RS15930 PF00455 DeoR C terminal sensor domain LK04_RS15935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LK04_RS15935 PF01842 ACT domain LK04_RS15935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LK04_RS15940 PF00005 ABC transporter LK04_RS15940 PF12848 ABC transporter LK04_RS15945 PF01381 Helix-turn-helix LK04_RS15945 PF13521 AAA domain LK04_RS15950 PF18073 Rubredoxin metal binding domain LK04_RS15955 PF18429 Domain of unknown function (DUF5609) LK04_RS15960 PF10144 Bacterial virulence factor haemolysin LK04_RS15965 PF07804 HipA-like C-terminal domain LK04_RS15970 PF13419 Haloacid dehalogenase-like hydrolase LK04_RS15975 PF00583 Acetyltransferase (GNAT) family LK04_RS15980 PF03603 DNA polymerase III psi subunit LK04_RS15985 PF05175 Methyltransferase small domain LK04_RS15985 PF08468 Methyltransferase small domain N-terminal LK04_RS16010 PF17151 Periplasmic sensor domain LK04_RS16010 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS16020 PF11575 FhuF 2Fe-2S C-terminal domain LK04_RS16020 PF06276 Ferric iron reductase FhuF-like transporter LK04_RS16025 PF04073 Aminoacyl-tRNA editing domain LK04_RS16030 PF07690 Major Facilitator Superfamily LK04_RS16035 PF01156 Inosine-uridine preferring nucleoside hydrolase LK04_RS16040 PF00356 Bacterial regulatory proteins, lacI family LK04_RS16045 PF00083 Sugar (and other) transporter LK04_RS16045 PF07690 Major Facilitator Superfamily LK04_RS16065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS16065 PF03466 LysR substrate binding domain LK04_RS16070 PF14552 Tautomerase enzyme LK04_RS16075 PF00884 Sulfatase LK04_RS16080 PF13520 Amino acid permease LK04_RS16095 PF00155 Aminotransferase class I and II LK04_RS16095 PF00392 Bacterial regulatory proteins, gntR family LK04_RS16105 PF00144 Beta-lactamase LK04_RS16110 PF03180 NLPA lipoprotein LK04_RS16120 PF02810 SEC-C motif LK04_RS16120 PF03695 Uncharacterised protein family (UPF0149) LK04_RS16130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS16130 PF03466 LysR substrate binding domain LK04_RS16135 PF02525 Flavodoxin-like fold LK04_RS16145 PF05280 Flagellar transcriptional activator (FlhC) LK04_RS16150 PF05247 Flagellar transcriptional activator (FlhD) LK04_RS16155 PF04545 Sigma-70, region 4 LK04_RS16155 PF04539 Sigma-70 region 3 LK04_RS16155 PF04542 Sigma-70 region 2 LK04_RS16185 PF10696 Protein of unknown function (DUF2501) LK04_RS16190 PF00155 Aminotransferase class I and II LK04_RS16190 PF00392 Bacterial regulatory proteins, gntR family LK04_RS16195 PF02525 Flavodoxin-like fold LK04_RS16200 PF02627 Carboxymuconolactone decarboxylase family LK04_RS16210 PF01914 MarC family integral membrane protein LK04_RS16215 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LK04_RS16215 PF00034 Cytochrome c LK04_RS16220 PF05199 GMC oxidoreductase LK04_RS16220 PF00732 GMC oxidoreductase LK04_RS16235 PF05872 Bacterial protein of unknown function (DUF853) LK04_RS16240 PF04286 Protein of unknown function (DUF445) LK04_RS16245 PF03739 Lipopolysaccharide export system permease LptF/LptG LK04_RS16250 PF03739 Lipopolysaccharide export system permease LptF/LptG LK04_RS16255 PF00883 Cytosol aminopeptidase family, catalytic domain LK04_RS16255 PF02789 Cytosol aminopeptidase family, N-terminal domain LK04_RS16260 PF04364 DNA polymerase III chi subunit, HolC LK04_RS16265 PF08264 Anticodon-binding domain of tRNA LK04_RS16265 PF10458 Valyl tRNA synthetase tRNA binding arm LK04_RS16265 PF00133 tRNA synthetases class I (I, L, M and V) LK04_RS16270 PF00583 Acetyltransferase (GNAT) family LK04_RS16275 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LK04_RS16280 PF06877 Regulator of ribonuclease activity B LK04_RS16285 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LK04_RS16285 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LK04_RS16290 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LK04_RS16290 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LK04_RS16295 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LK04_RS16295 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LK04_RS16300 PF01042 Endoribonuclease L-PSP LK04_RS16305 PF07691 PA14 domain LK04_RS16305 PF00728 Glycosyl hydrolase family 20, catalytic domain LK04_RS16305 PF02838 Glycosyl hydrolase family 20, domain 2 LK04_RS16310 PF13597 Anaerobic ribonucleoside-triphosphate reductase LK04_RS16310 PF03477 ATP cone domain LK04_RS16320 PF03773 Predicted permease LK04_RS16330 PF01541 GIY-YIG catalytic domain LK04_RS16335 PF13508 Acetyltransferase (GNAT) domain LK04_RS16340 PF02036 SCP-2 sterol transfer family LK04_RS16345 PF01136 Peptidase family U32 LK04_RS16350 PF01136 Peptidase family U32 LK04_RS16355 PF00296 Luciferase-like monooxygenase LK04_RS16360 PF06719 AraC-type transcriptional regulator N-terminus LK04_RS16360 PF12833 Helix-turn-helix domain LK04_RS16370 PF00271 Helicase conserved C-terminal domain LK04_RS16370 PF12343 Cold shock protein DEAD box A LK04_RS16370 PF00270 DEAD/DEAH box helicase LK04_RS16370 PF03880 DbpA RNA binding domain LK04_RS16375 PF13181 Tetratricopeptide repeat LK04_RS16375 PF07719 Tetratricopeptide repeat LK04_RS16380 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LK04_RS16380 PF01138 3' exoribonuclease family, domain 1 LK04_RS16380 PF03725 3' exoribonuclease family, domain 2 LK04_RS16380 PF00013 KH domain LK04_RS16380 PF00575 S1 RNA binding domain LK04_RS16385 PF00312 Ribosomal protein S15 LK04_RS16390 PF09157 Pseudouridine synthase II TruB, C-terminal LK04_RS16390 PF01509 TruB family pseudouridylate synthase (N terminal domain) LK04_RS16390 PF16198 tRNA pseudouridylate synthase B C-terminal domain LK04_RS16395 PF02033 Ribosome-binding factor A LK04_RS16400 PF04760 Translation initiation factor IF-2, N-terminal region LK04_RS16400 PF08364 Bacterial translation initiation factor IF-2 associated region LK04_RS16400 PF11987 Translation-initiation factor 2 LK04_RS16400 PF00009 Elongation factor Tu GTP binding domain LK04_RS16405 PF00575 S1 RNA binding domain LK04_RS16405 PF08529 NusA N-terminal domain LK04_RS16405 PF13184 NusA-like KH domain LK04_RS16410 PF17384 RimP C-terminal SH3 domain LK04_RS16410 PF02576 RimP N-terminal domain LK04_RS16425 PF03840 Preprotein translocase SecG subunit LK04_RS16430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LK04_RS16430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LK04_RS16430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LK04_RS16430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LK04_RS16435 PF00809 Pterin binding enzyme LK04_RS16440 PF00004 ATPase family associated with various cellular activities (AAA) LK04_RS16440 PF06480 FtsH Extracellular LK04_RS16440 PF01434 Peptidase family M41 LK04_RS16440 PF17862 AAA+ lid domain LK04_RS16445 PF01728 FtsJ-like methyltransferase LK04_RS16450 PF01985 CRS1 / YhbY (CRM) domain LK04_RS16455 PF01272 Transcription elongation factor, GreA/GreB, C-term LK04_RS16455 PF03449 Transcription elongation factor, N-terminal LK04_RS16460 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LK04_RS16465 PF00072 Response regulator receiver domain LK04_RS16465 PF00486 Transcriptional regulatory protein, C terminal LK04_RS16470 PF00672 HAMP domain LK04_RS16470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS16470 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS16475 PF07715 TonB-dependent Receptor Plug Domain LK04_RS16475 PF00593 TonB dependent receptor LK04_RS16480 PF11806 Domain of unknown function (DUF3327) LK04_RS16480 PF00756 Putative esterase LK04_RS16485 PF00501 AMP-binding enzyme LK04_RS16485 PF00550 Phosphopantetheine attachment site LK04_RS16485 PF00668 Condensation domain LK04_RS16485 PF00975 Thioesterase domain LK04_RS16490 PF00005 ABC transporter LK04_RS16495 PF01032 FecCD transport family LK04_RS16500 PF01032 FecCD transport family LK04_RS16505 PF05977 Transmembrane secretion effector LK04_RS16510 PF01497 Periplasmic binding protein LK04_RS16515 PF00425 chorismate binding enzyme LK04_RS16520 PF00501 AMP-binding enzyme LK04_RS16520 PF13193 AMP-binding enzyme C-terminal domain LK04_RS16525 PF00857 Isochorismatase family LK04_RS16525 PF00550 Phosphopantetheine attachment site LK04_RS16535 PF03061 Thioesterase superfamily LK04_RS16540 PF01926 50S ribosome-binding GTPase LK04_RS16540 PF01018 GTP1/OBG LK04_RS16545 PF01016 Ribosomal L27 protein LK04_RS16550 PF00829 Ribosomal prokaryotic L21 protein LK04_RS16555 PF00348 Polyprenyl synthetase LK04_RS16560 PF13693 Winged helix-turn-helix DNA-binding LK04_RS16565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LK04_RS16570 PF01722 BolA-like protein LK04_RS16575 PF13466 STAS domain LK04_RS16580 PF05494 MlaC protein LK04_RS16585 PF02470 MlaD protein LK04_RS16590 PF02405 Permease MlaE LK04_RS16595 PF00005 ABC transporter LK04_RS16600 PF01699 Sodium/calcium exchanger protein LK04_RS16605 PF01380 SIS domain LK04_RS16605 PF00571 CBS domain LK04_RS16615 PF06835 Lipopolysaccharide-assembly, LptC-related LK04_RS16620 PF03968 OstA-like protein LK04_RS16625 PF12399 Branched-chain amino acid ATP-binding cassette transporter LK04_RS16625 PF00005 ABC transporter LK04_RS16630 PF04552 Sigma-54, DNA binding domain LK04_RS16630 PF00309 Sigma-54 factor, Activator interacting domain (AID) LK04_RS16630 PF04963 Sigma-54 factor, core binding domain LK04_RS16635 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LK04_RS16640 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LK04_RS16645 PF03668 P-loop ATPase protein family LK04_RS16650 PF00381 PTS HPr component phosphorylation site LK04_RS16655 PF00912 Transglycosylase LK04_RS16660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS16660 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS16660 PF00072 Response regulator receiver domain LK04_RS16660 PF18415 Histidine kinase receptor ArcB trans-membrane domain LK04_RS16660 PF00989 PAS fold LK04_RS16660 PF01627 Hpt domain LK04_RS16665 PF01493 GXGXG motif LK04_RS16665 PF00310 Glutamine amidotransferases class-II LK04_RS16665 PF04898 Glutamate synthase central domain LK04_RS16665 PF01645 Conserved region in glutamate synthase LK04_RS16670 PF00667 FAD binding domain LK04_RS16670 PF00258 Flavodoxin LK04_RS16670 PF00175 Oxidoreductase NAD-binding domain LK04_RS16675 PF04386 Stringent starvation protein B LK04_RS16680 PF00043 Glutathione S-transferase, C-terminal domain LK04_RS16680 PF02798 Glutathione S-transferase, N-terminal domain LK04_RS16685 PF00380 Ribosomal protein S9/S16 LK04_RS16690 PF00572 Ribosomal protein L13 LK04_RS16695 PF03969 AFG1-like ATPase LK04_RS16700 PF06295 Protein of unknown function (DUF1043) LK04_RS16705 PF00595 PDZ domain LK04_RS16705 PF13180 PDZ domain LK04_RS16710 PF13180 PDZ domain LK04_RS16715 PF00152 tRNA synthetases class II (D, K and N) LK04_RS16720 PF08085 Entericidin EcnA/B family LK04_RS16730 PF08207 Elongation factor P (EF-P) KOW-like domain LK04_RS16730 PF01132 Elongation factor P (EF-P) OB domain LK04_RS16730 PF09285 Elongation factor P, C-terminal LK04_RS16735 PF04055 Radical SAM superfamily LK04_RS16740 PF13698 Domain of unknown function (DUF4156) LK04_RS16745 PF00118 TCP-1/cpn60 chaperonin family LK04_RS16750 PF00166 Chaperonin 10 Kd subunit LK04_RS16755 PF04186 FxsA cytoplasmic membrane protein LK04_RS16760 PF10415 Fumarase C C-terminus LK04_RS16760 PF00206 Lyase LK04_RS16765 PF03605 Anaerobic c4-dicarboxylate membrane transporter LK04_RS16770 PF11412 Disulphide bond corrector protein DsbC LK04_RS16770 PF02683 Cytochrome C biogenesis protein transmembrane region LK04_RS16770 PF13098 Thioredoxin-like domain LK04_RS16790 PF07690 Major Facilitator Superfamily LK04_RS16795 PF03737 Aldolase/RraA LK04_RS16800 PF00892 EamA-like transporter family LK04_RS16815 PF02626 Carboxyltransferase domain, subdomain A and B LK04_RS16820 PF03746 LamB/YcsF family LK04_RS16825 PF00155 Aminotransferase class I and II LK04_RS16830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS16830 PF03466 LysR substrate binding domain LK04_RS16840 PF00106 short chain dehydrogenase LK04_RS16845 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS16850 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS16855 PF00005 ABC transporter LK04_RS16860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LK04_RS16860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS16865 PF01261 Xylose isomerase-like TIM barrel LK04_RS16875 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS16875 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LK04_RS16880 PF01261 Xylose isomerase-like TIM barrel LK04_RS16885 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS16885 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LK04_RS16890 PF00356 Bacterial regulatory proteins, lacI family LK04_RS16895 PF02798 Glutathione S-transferase, N-terminal domain LK04_RS16905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS16905 PF00672 HAMP domain LK04_RS16905 PF02203 Tar ligand binding domain homologue LK04_RS16910 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 LK04_RS16910 PF00535 Glycosyl transferase family 2 LK04_RS16920 PF13407 Periplasmic binding protein domain LK04_RS16925 PF01261 Xylose isomerase-like TIM barrel LK04_RS16930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LK04_RS16930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LK04_RS16935 PF02954 Bacterial regulatory protein, Fis family LK04_RS16935 PF13426 PAS domain LK04_RS16935 PF00158 Sigma-54 interaction domain LK04_RS16955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS16955 PF03466 LysR substrate binding domain LK04_RS16960 PF00180 Isocitrate/isopropylmalate dehydrogenase LK04_RS16965 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS16970 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS16985 PF00005 ABC transporter LK04_RS16985 PF17912 MalK OB fold domain LK04_RS16995 PF01325 Iron dependent repressor, N-terminal DNA binding domain LK04_RS16995 PF00480 ROK family LK04_RS17020 PF01011 PQQ enzyme repeat LK04_RS17025 PF00083 Sugar (and other) transporter LK04_RS17025 PF07690 Major Facilitator Superfamily LK04_RS17030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS17030 PF03466 LysR substrate binding domain LK04_RS17035 PF12833 Helix-turn-helix domain LK04_RS17040 PF00072 Response regulator receiver domain LK04_RS17040 PF00486 Transcriptional regulatory protein, C terminal LK04_RS17045 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS17045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS17045 PF08521 Two-component sensor kinase N-terminal LK04_RS17050 PF03502 Nucleoside-specific channel-forming protein, Tsx LK04_RS17055 PF06983 3-demethylubiquinone-9 3-methyltransferase LK04_RS17060 PF03466 LysR substrate binding domain LK04_RS17060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS17065 PF01546 Peptidase family M20/M25/M40 LK04_RS17065 PF07687 Peptidase dimerisation domain LK04_RS17070 PF01546 Peptidase family M20/M25/M40 LK04_RS17075 PF03806 AbgT putative transporter family LK04_RS17080 PF00083 Sugar (and other) transporter LK04_RS17085 PF06114 IrrE N-terminal-like domain LK04_RS17090 PF00034 Cytochrome c LK04_RS17090 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LK04_RS17095 PF05199 GMC oxidoreductase LK04_RS17095 PF00732 GMC oxidoreductase LK04_RS17100 PF13618 Gluconate 2-dehydrogenase subunit 3 LK04_RS17105 PF05992 SbmA/BacA-like family LK04_RS17110 PF02734 DAK2 domain LK04_RS17110 PF02733 Dak1 domain LK04_RS17125 PF07690 Major Facilitator Superfamily LK04_RS17130 PF12852 Cupin LK04_RS17130 PF12833 Helix-turn-helix domain LK04_RS17135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS17135 PF08447 PAS fold LK04_RS17140 PF03797 Autotransporter beta-domain LK04_RS17140 PF02395 Immunoglobulin A1 protease LK04_RS17145 PF02378 Phosphotransferase system, EIIC LK04_RS17145 PF00367 phosphotransferase system, EIIB LK04_RS17150 PF01380 SIS domain LK04_RS17160 PF00375 Sodium:dicarboxylate symporter family LK04_RS17165 PF00501 AMP-binding enzyme LK04_RS17165 PF16177 Acetyl-coenzyme A synthetase N-terminus LK04_RS17165 PF13193 AMP-binding enzyme C-terminal domain LK04_RS17170 PF04341 Protein of unknown function, DUF485 LK04_RS17175 PF00474 Sodium:solute symporter family LK04_RS17190 PF04172 LrgB-like family LK04_RS17195 PF03788 LrgA family LK04_RS17200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS17200 PF03466 LysR substrate binding domain LK04_RS17205 PF00999 Sodium/hydrogen exchanger family LK04_RS17210 PF00860 Permease family LK04_RS17220 PF00376 MerR family regulatory protein LK04_RS17220 PF09278 MerR, DNA binding LK04_RS17225 PF12833 Helix-turn-helix domain LK04_RS17230 PF15940 Family of unknown function LK04_RS17250 PF00892 EamA-like transporter family LK04_RS17255 PF02311 AraC-like ligand binding domain LK04_RS17255 PF12833 Helix-turn-helix domain LK04_RS17265 PF00436 Single-strand binding protein family LK04_RS17270 PF00005 ABC transporter LK04_RS17270 PF17760 UvrA interaction domain LK04_RS17270 PF17755 UvrA DNA-binding domain LK04_RS17275 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS17275 PF00107 Zinc-binding dehydrogenase LK04_RS17280 PF04237 YjbR LK04_RS17285 PF00155 Aminotransferase class I and II LK04_RS17295 PF01037 Lrp/AsnC ligand binding domain LK04_RS17300 PF00772 DnaB-like helicase N terminal domain LK04_RS17300 PF03796 DnaB-like helicase C terminal domain LK04_RS17305 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS17305 PF00107 Zinc-binding dehydrogenase LK04_RS17310 PF09583 Phage shock protein G (Phageshock_PspG) LK04_RS17315 PF01207 Dihydrouridine synthase (Dus) LK04_RS17325 PF01475 Ferric uptake regulator family LK04_RS17330 PF05532 CsbD-like LK04_RS17335 PF01554 MatE LK04_RS17340 PF00717 Peptidase S24-like LK04_RS17340 PF01726 LexA DNA binding domain LK04_RS17345 PF01219 Prokaryotic diacylglycerol kinase LK04_RS17350 PF01553 Acyltransferase LK04_RS17355 PF01040 UbiA prenyltransferase family LK04_RS17360 PF04345 Chorismate lyase LK04_RS17365 PF06146 Phosphate-starvation-inducible E LK04_RS17385 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS17395 PF08402 TOBE domain LK04_RS17395 PF00005 ABC transporter LK04_RS17400 PF02690 Na+/Pi-cotransporter LK04_RS17405 PF02447 GntP family permease LK04_RS17410 PF01202 Shikimate kinase LK04_RS17415 PF00356 Bacterial regulatory proteins, lacI family LK04_RS17415 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LK04_RS17420 PF17954 Quercetinase C-terminal cupin domain LK04_RS17420 PF02678 Pirin LK04_RS17425 PF03806 AbgT putative transporter family LK04_RS17430 PF00583 Acetyltransferase (GNAT) family LK04_RS17445 PF03009 Glycerophosphoryl diester phosphodiesterase family LK04_RS17450 PF17912 MalK OB fold domain LK04_RS17450 PF00005 ABC transporter LK04_RS17455 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS17460 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS17465 PF13416 Bacterial extracellular solute-binding protein LK04_RS17470 PF00005 ABC transporter LK04_RS17475 PF00005 ABC transporter LK04_RS17475 PF12399 Branched-chain amino acid ATP-binding cassette transporter LK04_RS17480 PF11862 Domain of unknown function (DUF3382) LK04_RS17480 PF02653 Branched-chain amino acid transport system / permease component LK04_RS17485 PF02653 Branched-chain amino acid transport system / permease component LK04_RS17490 PF13458 Periplasmic binding protein LK04_RS17495 PF12568 Acetyltransferase (GNAT) domain, PanZ LK04_RS17500 PF04542 Sigma-70 region 2 LK04_RS17500 PF00140 Sigma-70 factor, region 1.2 LK04_RS17500 PF04545 Sigma-70, region 4 LK04_RS17505 PF02687 FtsX-like permease family LK04_RS17505 PF18075 FtsX extracellular domain LK04_RS17510 PF00005 ABC transporter LK04_RS17515 PF00448 SRP54-type protein, GTPase domain LK04_RS17515 PF02881 SRP54-type protein, helical bundle domain LK04_RS17525 PF06611 Protein of unknown function (DUF1145) LK04_RS17535 PF07947 YhhN family LK04_RS17540 PF00403 Heavy-metal-associated domain LK04_RS17545 PF01206 Sulfurtransferase TusA LK04_RS17550 PF02592 Putative vitamin uptake transporter LK04_RS17555 PF08786 DcrB LK04_RS17560 PF00343 Carbohydrate phosphorylase LK04_RS17565 PF00534 Glycosyl transferases group 1 LK04_RS17565 PF08323 Starch synthase catalytic domain LK04_RS17570 PF00483 Nucleotidyl transferase LK04_RS17575 PF18390 Glycogen debranching enzyme C-terminal domain LK04_RS17575 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LK04_RS17575 PF00128 Alpha amylase, catalytic domain LK04_RS17580 PF02806 Alpha amylase, C-terminal all-beta domain LK04_RS17580 PF00128 Alpha amylase, catalytic domain LK04_RS17580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LK04_RS17590 PF01118 Semialdehyde dehydrogenase, NAD binding domain LK04_RS17590 PF02774 Semialdehyde dehydrogenase, dimerisation domain LK04_RS17595 PF01914 MarC family integral membrane protein LK04_RS17615 PF01758 Sodium Bile acid symporter family LK04_RS17620 PF00230 Major intrinsic protein LK04_RS17625 PF01842 ACT domain LK04_RS17625 PF00696 Amino acid kinase family LK04_RS17630 PF00342 Phosphoglucose isomerase LK04_RS17640 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF LK04_RS17645 PF06251 Capsule biosynthesis GfcC LK04_RS17650 PF06082 Exopolysaccharide biosynthesis protein YbjH LK04_RS17655 PF02310 B12 binding domain LK04_RS17655 PF00809 Pterin binding enzyme LK04_RS17655 PF02574 Homocysteine S-methyltransferase LK04_RS17655 PF02607 B12 binding domain LK04_RS17655 PF02965 Vitamin B12 dependent methionine synthase, activation domain LK04_RS17660 PF01614 Bacterial transcriptional regulator LK04_RS17660 PF09339 IclR helix-turn-helix domain LK04_RS17665 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LK04_RS17670 PF00463 Isocitrate lyase family LK04_RS17675 PF01274 Malate synthase LK04_RS17680 PF04204 Homoserine O-succinyltransferase LK04_RS17710 PF02142 MGS-like domain LK04_RS17710 PF01808 AICARFT/IMPCHase bienzyme LK04_RS17715 PF02844 Phosphoribosylglycinamide synthetase, N domain LK04_RS17715 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LK04_RS17715 PF02843 Phosphoribosylglycinamide synthetase, C domain LK04_RS17725 PF00216 Bacterial DNA-binding protein LK04_RS17730 PF04222 Protein of unknown function (DUF416) LK04_RS17735 PF04493 Endonuclease V LK04_RS17740 PF01208 Uroporphyrinogen decarboxylase (URO-D) LK04_RS17745 PF00293 NUDIX domain LK04_RS17745 PF09297 NADH pyrophosphatase zinc ribbon domain LK04_RS17750 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LK04_RS17755 PF01964 Radical SAM ThiC family LK04_RS17755 PF13667 ThiC-associated domain LK04_RS17760 PF02581 Thiamine monophosphate synthase LK04_RS17765 PF00392 Bacterial regulatory proteins, gntR family LK04_RS17765 PF00155 Aminotransferase class I and II LK04_RS17770 PF04997 RNA polymerase Rpb1, domain 1 LK04_RS17770 PF04983 RNA polymerase Rpb1, domain 3 LK04_RS17770 PF05000 RNA polymerase Rpb1, domain 4 LK04_RS17770 PF04998 RNA polymerase Rpb1, domain 5 LK04_RS17770 PF00623 RNA polymerase Rpb1, domain 2 LK04_RS17775 PF04561 RNA polymerase Rpb2, domain 2 LK04_RS17775 PF04560 RNA polymerase Rpb2, domain 7 LK04_RS17775 PF00562 RNA polymerase Rpb2, domain 6 LK04_RS17775 PF04565 RNA polymerase Rpb2, domain 3 LK04_RS17775 PF10385 RNA polymerase beta subunit external 1 domain LK04_RS17775 PF04563 RNA polymerase beta subunit LK04_RS17780 PF16320 Ribosomal protein L7/L12 dimerisation domain LK04_RS17780 PF00542 Ribosomal protein L7/L12 C-terminal domain LK04_RS17785 PF00466 Ribosomal protein L10 LK04_RS17790 PF00687 Ribosomal protein L1p/L10e family LK04_RS17795 PF03946 Ribosomal protein L11, N-terminal domain LK04_RS17795 PF00298 Ribosomal protein L11, RNA binding domain LK04_RS17800 PF00467 KOW motif LK04_RS17800 PF02357 Transcription termination factor nusG LK04_RS17805 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LK04_RS17810 PF03144 Elongation factor Tu domain 2 LK04_RS17810 PF00009 Elongation factor Tu GTP binding domain LK04_RS17810 PF03143 Elongation factor Tu C-terminal domain LK04_RS17835 PF13673 Acetyltransferase (GNAT) domain LK04_RS17840 PF00485 Phosphoribulokinase / Uridine kinase family LK04_RS17845 PF02237 Biotin protein ligase C terminal domain LK04_RS17845 PF03099 Biotin/lipoate A/B protein ligase family LK04_RS17845 PF08279 HTH domain LK04_RS17850 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LK04_RS17850 PF01565 FAD binding domain LK04_RS17875 PF12724 Flavodoxin domain LK04_RS17880 PF02386 Cation transport protein LK04_RS17885 PF09186 Domain of unknown function (DUF1949) LK04_RS17885 PF01205 Uncharacterized protein family UPF0029 LK04_RS17890 PF00557 Metallopeptidase family M24 LK04_RS17895 PF00378 Enoyl-CoA hydratase/isomerase LK04_RS17895 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LK04_RS17895 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LK04_RS17900 PF02803 Thiolase, C-terminal domain LK04_RS17900 PF00108 Thiolase, N-terminal domain LK04_RS17905 PF00970 Oxidoreductase FAD-binding domain LK04_RS17905 PF00175 Oxidoreductase NAD-binding domain LK04_RS17910 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LK04_RS17915 PF03575 Peptidase family S51 LK04_RS17920 PF02357 Transcription termination factor nusG LK04_RS17925 PF01026 TatD related DNase LK04_RS17930 PF00902 Sec-independent protein translocase protein (TatC) LK04_RS17940 PF02416 mttA/Hcf106 family LK04_RS17945 PF03109 ABC1 family LK04_RS17950 PF02036 SCP-2 sterol transfer family LK04_RS17955 PF01209 ubiE/COQ5 methyltransferase family LK04_RS17960 PF02646 RmuC family LK04_RS17970 PF01048 Phosphorylase superfamily LK04_RS17975 PF01738 Dienelactone hydrolase family LK04_RS17980 PF01717 Cobalamin-independent synthase, Catalytic domain LK04_RS17980 PF08267 Cobalamin-independent synthase, N-terminal domain LK04_RS17985 PF03466 LysR substrate binding domain LK04_RS17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS17990 PF07308 Protein of unknown function (DUF1456) LK04_RS17995 PF00892 EamA-like transporter family LK04_RS18000 PF07690 Major Facilitator Superfamily LK04_RS18010 PF12146 Serine aminopeptidase, S33 LK04_RS18015 PF01810 LysE type translocator LK04_RS18020 PF01810 LysE type translocator LK04_RS18025 PF16124 RecQ zinc-binding LK04_RS18025 PF00570 HRDC domain LK04_RS18025 PF00271 Helicase conserved C-terminal domain LK04_RS18025 PF00270 DEAD/DEAH box helicase LK04_RS18025 PF09382 RQC domain LK04_RS18030 PF02253 Phospholipase A1 LK04_RS18035 PF03061 Thioesterase superfamily LK04_RS18040 PF00892 EamA-like transporter family LK04_RS18045 PF05145 Transition state regulatory protein AbrB LK04_RS18050 PF01544 CorA-like Mg2+ transporter protein LK04_RS18055 PF13361 UvrD-like helicase C-terminal domain LK04_RS18055 PF00580 UvrD/REP helicase N-terminal domain LK04_RS18060 PF13419 Haloacid dehalogenase-like hydrolase LK04_RS18065 PF00589 Phage integrase family LK04_RS18065 PF02899 Phage integrase, N-terminal SAM-like domain LK04_RS18070 PF04340 Protein of unknown function, DUF484 LK04_RS18075 PF01678 Diaminopimelate epimerase LK04_RS18080 PF13627 Prokaryotic lipoprotein-attachment site LK04_RS18085 PF12633 Adenylate cyclase NT domain LK04_RS18085 PF01295 Adenylate cyclase, class-I LK04_RS18090 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LK04_RS18090 PF03900 Porphobilinogen deaminase, C-terminal domain LK04_RS18095 PF02602 Uroporphyrinogen-III synthase HemD LK04_RS18100 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LK04_RS18105 PF07219 HemY protein N-terminus LK04_RS18105 PF07719 Tetratricopeptide repeat LK04_RS18130 PF03808 Glycosyl transferase WecB/TagA/CpsF family LK04_RS18135 PF06899 WzyE protein, O-antigen assembly polymerase LK04_RS18140 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 LK04_RS18145 PF01943 Polysaccharide biosynthesis protein LK04_RS18150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LK04_RS18160 PF00483 Nucleotidyl transferase LK04_RS18165 PF16363 GDP-mannose 4,6 dehydratase LK04_RS18170 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LK04_RS18170 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LK04_RS18170 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LK04_RS18175 PF02350 UDP-N-acetylglucosamine 2-epimerase LK04_RS18180 PF02706 Chain length determinant protein LK04_RS18185 PF00953 Glycosyl transferase family 4 LK04_RS18190 PF07498 Rho termination factor, N-terminal domain LK04_RS18190 PF07497 Rho termination factor, RNA-binding domain LK04_RS18190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LK04_RS18195 PF00085 Thioredoxin LK04_RS18200 PF00271 Helicase conserved C-terminal domain LK04_RS18200 PF00270 DEAD/DEAH box helicase LK04_RS18205 PF02541 Ppx/GppA phosphatase family LK04_RS18210 PF00580 UvrD/REP helicase N-terminal domain LK04_RS18210 PF13361 UvrD-like helicase C-terminal domain LK04_RS18220 PF05170 AsmA family LK04_RS18225 PF00563 EAL domain LK04_RS18230 PF00294 pfkB family carbohydrate kinase LK04_RS18235 PF07859 alpha/beta hydrolase fold LK04_RS18235 PF00331 Glycosyl hydrolase family 10 LK04_RS18240 PF05193 Peptidase M16 inactive domain LK04_RS18240 PF00675 Insulinase (Peptidase family M16) LK04_RS18245 PF00375 Sodium:dicarboxylate symporter family LK04_RS18250 PF17154 Gammaproteobacterial periplasmic sensor domain LK04_RS18250 PF00672 HAMP domain LK04_RS18250 PF00990 Diguanylate cyclase, GGDEF domain LK04_RS18250 PF00563 EAL domain LK04_RS18255 PF11658 Cellulose biosynthesis protein BcsG LK04_RS18265 PF10995 Cellulose biosynthesis GIL LK04_RS18275 PF06564 Cellulose biosynthesis protein BcsQ LK04_RS18280 PF07238 PilZ domain LK04_RS18280 PF00535 Glycosyl transferase family 2 LK04_RS18285 PF03170 Bacterial cellulose synthase subunit LK04_RS18290 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LK04_RS18295 PF01270 Glycosyl hydrolases family 8 LK04_RS18305 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LK04_RS18310 PF03170 Bacterial cellulose synthase subunit LK04_RS18315 PF00535 Glycosyl transferase family 2 LK04_RS18315 PF07238 PilZ domain LK04_RS18315 PF03552 Cellulose synthase LK04_RS18320 PF10609 NUBPL iron-transfer P-loop NTPase LK04_RS18330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS18330 PF00005 ABC transporter LK04_RS18335 PF00005 ABC transporter LK04_RS18335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS18340 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS18340 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS18345 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS18350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS18365 PF08019 Phosphoethanolamine transferase EptA/EptB LK04_RS18365 PF00884 Sulfatase LK04_RS18370 PF02566 OsmC-like protein LK04_RS18375 PF01047 MarR family LK04_RS18385 PF01381 Helix-turn-helix LK04_RS18390 PF02785 Biotin carboxylase C-terminal domain LK04_RS18390 PF00289 Biotin carboxylase, N-terminal domain LK04_RS18390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LK04_RS18405 PF00005 ABC transporter LK04_RS18425 PF00005 ABC transporter LK04_RS18425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS18430 PF00005 ABC transporter LK04_RS18430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS18435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS18440 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS18445 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS18445 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS18455 PF11254 Protein of unknown function (DUF3053) LK04_RS18460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LK04_RS18460 PF02378 Phosphotransferase system, EIIC LK04_RS18460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LK04_RS18465 PF08125 Mannitol dehydrogenase C-terminal domain LK04_RS18465 PF01232 Mannitol dehydrogenase Rossmann domain LK04_RS18470 PF05068 Mannitol repressor LK04_RS18475 PF10928 Protein of unknown function (DUF2810) LK04_RS18480 PF04393 Protein of unknown function (DUF535) LK04_RS18485 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LK04_RS18485 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LK04_RS18490 PF00202 Aminotransferase class-III LK04_RS18495 PF00455 DeoR C terminal sensor domain LK04_RS18495 PF08220 DeoR-like helix-turn-helix domain LK04_RS18505 PF13333 Integrase core domain LK04_RS18505 PF00665 Integrase core domain LK04_RS18505 PF13276 HTH-like domain LK04_RS18510 PF02634 FdhD/NarQ family LK04_RS18515 PF00384 Molybdopterin oxidoreductase LK04_RS18515 PF01568 Molydopterin dinucleotide binding domain LK04_RS18515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LK04_RS18520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LK04_RS18520 PF01568 Molydopterin dinucleotide binding domain LK04_RS18520 PF00384 Molybdopterin oxidoreductase LK04_RS18525 PF13247 4Fe-4S dicluster domain LK04_RS18525 PF09163 Formate dehydrogenase N, transmembrane LK04_RS18530 PF01292 Prokaryotic cytochrome b561 LK04_RS18535 PF04216 Protein involved in formate dehydrogenase formation LK04_RS18540 PF13417 Glutathione S-transferase, N-terminal domain LK04_RS18540 PF00043 Glutathione S-transferase, C-terminal domain LK04_RS18545 PF03841 L-seryl-tRNA selenium transferase LK04_RS18545 PF12390 Selenocysteine synthase N terminal LK04_RS18550 PF00009 Elongation factor Tu GTP binding domain LK04_RS18550 PF03144 Elongation factor Tu domain 2 LK04_RS18550 PF09107 Elongation factor SelB, winged helix LK04_RS18550 PF09106 Elongation factor SelB, winged helix LK04_RS18565 PF05746 DALR anticodon binding domain LK04_RS18565 PF02092 Glycyl-tRNA synthetase beta subunit LK04_RS18570 PF02091 Glycyl-tRNA synthetase alpha subunit LK04_RS18575 PF01042 Endoribonuclease L-PSP LK04_RS18590 PF00005 ABC transporter LK04_RS18595 PF01070 FMN-dependent dehydrogenase LK04_RS18605 PF01979 Amidohydrolase family LK04_RS18610 PF00392 Bacterial regulatory proteins, gntR family LK04_RS18610 PF07729 FCD domain LK04_RS18615 PF13378 Enolase C-terminal domain-like LK04_RS18615 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LK04_RS18620 PF01757 Acyltransferase family LK04_RS18630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LK04_RS18630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LK04_RS18640 PF13407 Periplasmic binding protein domain LK04_RS18645 PF00005 ABC transporter LK04_RS18650 PF02653 Branched-chain amino acid transport system / permease component LK04_RS18655 PF12833 Helix-turn-helix domain LK04_RS18670 PF12833 Helix-turn-helix domain LK04_RS18705 PF13419 Haloacid dehalogenase-like hydrolase LK04_RS18710 PF00860 Permease family LK04_RS18720 PF01613 Flavin reductase like domain LK04_RS18725 PF00672 HAMP domain LK04_RS18725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LK04_RS18725 PF12729 Four helix bundle sensory module for signal transduction LK04_RS18730 PF00881 Nitroreductase family LK04_RS18735 PF07804 HipA-like C-terminal domain LK04_RS18735 PF13657 HipA N-terminal domain LK04_RS18745 PF10396 GTP-binding protein TrmE N-terminus LK04_RS18745 PF12631 MnmE helical domain LK04_RS18745 PF01926 50S ribosome-binding GTPase LK04_RS18750 PF14849 YidC periplasmic domain LK04_RS18750 PF02096 60Kd inner membrane protein LK04_RS18755 PF00825 Ribonuclease P LK04_RS18760 PF00308 Bacterial dnaA protein LK04_RS18760 PF08299 Bacterial dnaA protein helix-turn-helix LK04_RS18760 PF11638 DnaA N-terminal domain LK04_RS18765 PF02768 DNA polymerase III beta subunit, C-terminal domain LK04_RS18765 PF00712 DNA polymerase III beta subunit, N-terminal domain LK04_RS18765 PF02767 DNA polymerase III beta subunit, central domain LK04_RS18770 PF02463 RecF/RecN/SMC N terminal domain LK04_RS18775 PF00986 DNA gyrase B subunit, carboxyl terminus LK04_RS18775 PF00204 DNA gyrase B LK04_RS18775 PF18053 DNA gyrase B subunit insert domain LK04_RS18775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS18775 PF01751 Toprim domain LK04_RS18780 PF00294 pfkB family carbohydrate kinase LK04_RS18785 PF00701 Dihydrodipicolinate synthetase family LK04_RS18795 PF07690 Major Facilitator Superfamily LK04_RS18805 PF00392 Bacterial regulatory proteins, gntR family LK04_RS18805 PF07729 FCD domain LK04_RS18810 PF05035 2-keto-3-deoxy-galactonokinase LK04_RS18815 PF01081 KDPG and KHG aldolase LK04_RS18820 PF13378 Enolase C-terminal domain-like LK04_RS18820 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LK04_RS18825 PF07690 Major Facilitator Superfamily LK04_RS18830 PF07676 WD40-like Beta Propeller Repeat LK04_RS18830 PF12566 Protein of unknown function (DUF3748) LK04_RS18835 PF07119 Protein of unknown function (DUF1375) LK04_RS18840 PF00011 Hsp20/alpha crystallin family LK04_RS18845 PF00892 EamA-like transporter family LK04_RS18850 PF04073 Aminoacyl-tRNA editing domain LK04_RS18865 PF00289 Biotin carboxylase, N-terminal domain LK04_RS18865 PF02785 Biotin carboxylase C-terminal domain LK04_RS18865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LK04_RS18875 PF00155 Aminotransferase class I and II LK04_RS18875 PF00392 Bacterial regulatory proteins, gntR family LK04_RS18880 PF00155 Aminotransferase class I and II LK04_RS18885 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LK04_RS18885 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LK04_RS18890 PF07690 Major Facilitator Superfamily LK04_RS18895 PF00294 pfkB family carbohydrate kinase LK04_RS18905 PF00356 Bacterial regulatory proteins, lacI family LK04_RS18910 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LK04_RS18910 PF00356 Bacterial regulatory proteins, lacI family LK04_RS18915 PF00691 OmpA family LK04_RS18915 PF13488 Glycine zipper LK04_RS18920 PF03352 Methyladenine glycosylase LK04_RS18925 PF03797 Autotransporter beta-domain LK04_RS18930 PF17948 DnaT DNA-binding domain LK04_RS18935 PF01695 IstB-like ATP binding protein LK04_RS18940 PF00480 ROK family LK04_RS18945 PF00083 Sugar (and other) transporter LK04_RS18950 PF00356 Bacterial regulatory proteins, lacI family LK04_RS18960 PF07690 Major Facilitator Superfamily LK04_RS18965 PF01895 PhoU domain LK04_RS18970 PF00005 ABC transporter LK04_RS18975 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS18980 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS18985 PF12849 PBP superfamily domain LK04_RS18990 PF01380 SIS domain LK04_RS18995 PF00132 Bacterial transferase hexapeptide (six repeats) LK04_RS18995 PF12804 MobA-like NTP transferase domain LK04_RS19000 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LK04_RS19000 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LK04_RS19005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LK04_RS19005 PF02874 ATP synthase alpha/beta family, beta-barrel domain LK04_RS19010 PF00231 ATP synthase LK04_RS19015 PF00306 ATP synthase alpha/beta chain, C terminal domain LK04_RS19015 PF02874 ATP synthase alpha/beta family, beta-barrel domain LK04_RS19015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LK04_RS19020 PF00213 ATP synthase delta (OSCP) subunit LK04_RS19025 PF00430 ATP synthase B/B' CF(0) LK04_RS19030 PF00137 ATP synthase subunit C LK04_RS19035 PF00119 ATP synthase A chain LK04_RS19040 PF03899 ATP synthase I chain LK04_RS19045 PF02527 rRNA small subunit methyltransferase G LK04_RS19050 PF01134 Glucose inhibited division protein A LK04_RS19050 PF13932 GidA associated domain LK04_RS19055 PF00258 Flavodoxin LK04_RS19060 PF01037 Lrp/AsnC ligand binding domain LK04_RS19075 PF07728 AAA domain (dynein-related subfamily) LK04_RS19075 PF17868 AAA lid domain LK04_RS19075 PF12592 Protein of unknown function (DUF3763) LK04_RS19080 PF02705 K+ potassium transporter LK04_RS19085 PF08521 Two-component sensor kinase N-terminal LK04_RS19085 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS19085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS19090 PF00486 Transcriptional regulatory protein, C terminal LK04_RS19090 PF00072 Response regulator receiver domain LK04_RS19095 PF04076 Bacterial OB fold (BOF) protein LK04_RS19100 PF05025 RbsD / FucU transport protein family LK04_RS19105 PF00005 ABC transporter LK04_RS19110 PF02653 Branched-chain amino acid transport system / permease component LK04_RS19115 PF13407 Periplasmic binding protein domain LK04_RS19120 PF00294 pfkB family carbohydrate kinase LK04_RS19125 PF00356 Bacterial regulatory proteins, lacI family LK04_RS19130 PF07690 Major Facilitator Superfamily LK04_RS19155 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LK04_RS19160 PF12804 MobA-like NTP transferase domain LK04_RS19165 PF06288 Protein of unknown function (DUF1040) LK04_RS19170 PF01636 Phosphotransferase enzyme family LK04_RS19175 PF01323 DSBA-like thioredoxin domain LK04_RS19180 PF00476 DNA polymerase family A LK04_RS19180 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LK04_RS19180 PF01612 3'-5' exonuclease LK04_RS19180 PF01367 5'-3' exonuclease, C-terminal SAM fold LK04_RS19185 PF01926 50S ribosome-binding GTPase LK04_RS19190 PF04220 Der GTPase activator (YihI) LK04_RS19195 PF06969 HemN C-terminal domain LK04_RS19195 PF04055 Radical SAM superfamily LK04_RS19200 PF00158 Sigma-54 interaction domain LK04_RS19200 PF02954 Bacterial regulatory protein, Fis family LK04_RS19200 PF00072 Response regulator receiver domain LK04_RS19205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS19205 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS19205 PF00989 PAS fold LK04_RS19210 PF03951 Glutamine synthetase, beta-Grasp domain LK04_RS19210 PF00120 Glutamine synthetase, catalytic domain LK04_RS19215 PF00009 Elongation factor Tu GTP binding domain LK04_RS19215 PF00679 Elongation factor G C-terminus LK04_RS19215 PF03144 Elongation factor Tu domain 2 LK04_RS19220 PF13419 Haloacid dehalogenase-like hydrolase LK04_RS19225 PF03631 Virulence factor BrkB LK04_RS19230 PF02580 D-Tyr-tRNA(Tyr) deacylase LK04_RS19235 PF00583 Acetyltransferase (GNAT) family LK04_RS19235 PF09500 Putative thioesterase (yiiD_Cterm) LK04_RS19240 PF05170 AsmA family LK04_RS19245 PF00860 Permease family LK04_RS19250 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS19250 PF00107 Zinc-binding dehydrogenase LK04_RS19260 PF00271 Helicase conserved C-terminal domain LK04_RS19260 PF00270 DEAD/DEAH box helicase LK04_RS19260 PF17191 RecG wedge domain LK04_RS19265 PF00588 SpoU rRNA Methylase family LK04_RS19265 PF12105 SpoU, rRNA methylase, C-terminal LK04_RS19270 PF04607 Region found in RelA / SpoT proteins LK04_RS19270 PF13291 ACT domain LK04_RS19270 PF02824 TGS domain LK04_RS19275 PF01192 RNA polymerase Rpb6 LK04_RS19280 PF00625 Guanylate kinase LK04_RS19285 PF03120 NAD-dependent DNA ligase OB-fold domain LK04_RS19285 PF01653 NAD-dependent DNA ligase adenylation domain LK04_RS19305 PF14031 Putative serine dehydratase domain LK04_RS19305 PF01168 Alanine racemase, N-terminal domain LK04_RS19310 PF02321 Outer membrane efflux protein LK04_RS19315 PF03279 Bacterial lipid A biosynthesis acyltransferase LK04_RS19320 PF02264 LamB porin LK04_RS19325 PF00128 Alpha amylase, catalytic domain LK04_RS19325 PF11941 Domain of unknown function (DUF3459) LK04_RS19330 PF00367 phosphotransferase system, EIIB LK04_RS19330 PF02378 Phosphotransferase system, EIIC LK04_RS19335 PF00356 Bacterial regulatory proteins, lacI family LK04_RS19340 PF08340 Domain of unknown function (DUF1732) LK04_RS19340 PF03755 YicC-like family, N-terminal region LK04_RS19350 PF07670 Nucleoside recognition LK04_RS19350 PF01773 Na+ dependent nucleoside transporter N-terminus LK04_RS19350 PF07662 Na+ dependent nucleoside transporter C-terminus LK04_RS19355 PF03725 3' exoribonuclease family, domain 2 LK04_RS19355 PF01138 3' exoribonuclease family, domain 1 LK04_RS19360 PF00156 Phosphoribosyl transferase domain LK04_RS19365 PF00440 Bacterial regulatory proteins, tetR family LK04_RS19370 PF00692 dUTPase LK04_RS19375 PF04127 DNA / pantothenate metabolism flavoprotein LK04_RS19375 PF02441 Flavoprotein LK04_RS19380 PF04002 RadC-like JAB domain LK04_RS19385 PF00830 Ribosomal L28 family LK04_RS19390 PF00471 Ribosomal protein L33 LK04_RS19395 PF06827 Zinc finger found in FPG and IleRS LK04_RS19395 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LK04_RS19395 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LK04_RS19400 PF01467 Cytidylyltransferase-like LK04_RS19405 PF00535 Glycosyl transferase family 2 LK04_RS19410 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LK04_RS19415 PF13439 Glycosyltransferase Family 4 LK04_RS19415 PF00534 Glycosyl transferases group 1 LK04_RS19420 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LK04_RS19425 PF00535 Glycosyl transferase family 2 LK04_RS19440 PF00534 Glycosyl transferases group 1 LK04_RS19440 PF13439 Glycosyltransferase Family 4 LK04_RS19445 PF00107 Zinc-binding dehydrogenase LK04_RS19445 PF08240 Alcohol dehydrogenase GroES-like domain LK04_RS19450 PF00155 Aminotransferase class I and II LK04_RS19455 PF01370 NAD dependent epimerase/dehydratase family LK04_RS19460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LK04_RS19465 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LK04_RS19475 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LK04_RS19480 PF04748 Divergent polysaccharide deacetylase LK04_RS19485 PF01551 Peptidase family M23 LK04_RS19490 PF00581 Rhodanese-like domain LK04_RS19495 PF00462 Glutaredoxin LK04_RS19500 PF02556 Preprotein translocase subunit SecB LK04_RS19505 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LK04_RS19505 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LK04_RS19510 PF06426 Serine acetyltransferase, N-terminal LK04_RS19510 PF00132 Bacterial transferase hexapeptide (six repeats) LK04_RS19515 PF00588 SpoU rRNA Methylase family LK04_RS19520 PF00672 HAMP domain LK04_RS19520 PF16527 Two-component sensor protein CpxA, periplasmic domain LK04_RS19520 PF00512 His Kinase A (phospho-acceptor) domain LK04_RS19520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LK04_RS19525 PF00486 Transcriptional regulatory protein, C terminal LK04_RS19525 PF00072 Response regulator receiver domain LK04_RS19530 PF07813 LTXXQ motif family protein LK04_RS19535 PF16916 Dimerisation domain of Zinc Transporter LK04_RS19535 PF01545 Cation efflux family LK04_RS19540 PF00365 Phosphofructokinase LK04_RS19550 PF02611 CDP-diacylglycerol pyrophosphatase LK04_RS19555 PF00121 Triosephosphate isomerase LK04_RS19560 PF07305 Protein of unknown function (DUF1454) LK04_RS19565 PF00175 Oxidoreductase NAD-binding domain LK04_RS19565 PF00970 Oxidoreductase FAD-binding domain LK04_RS19570 PF07690 Major Facilitator Superfamily LK04_RS19575 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LK04_RS19580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LK04_RS19580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LK04_RS19585 PF00230 Major intrinsic protein LK04_RS19590 PF06005 Cell division protein ZapB LK04_RS19595 PF03737 Aldolase/RraA LK04_RS19600 PF07724 AAA domain (Cdc48 subfamily) LK04_RS19600 PF10431 C-terminal, D2-small domain, of ClpB protein LK04_RS19600 PF00004 ATPase family associated with various cellular activities (AAA) LK04_RS19605 PF00227 Proteasome subunit LK04_RS19610 PF05036 Sporulation related domain LK04_RS19615 PF00356 Bacterial regulatory proteins, lacI family LK04_RS19620 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LK04_RS19620 PF18074 Primosomal protein N C-terminal domain LK04_RS19620 PF00271 Helicase conserved C-terminal domain LK04_RS19620 PF00270 DEAD/DEAH box helicase LK04_RS19620 PF17764 3′ DNA-binding domain (3′BD) LK04_RS19625 PF01197 Ribosomal protein L31 LK04_RS19630 PF01340 Met Apo-repressor, MetJ LK04_RS19635 PF01053 Cys/Met metabolism PLP-dependent enzyme LK04_RS19640 PF00696 Amino acid kinase family LK04_RS19640 PF03447 Homoserine dehydrogenase, NAD binding domain LK04_RS19640 PF00742 Homoserine dehydrogenase LK04_RS19645 PF02219 Methylenetetrahydrofolate reductase LK04_RS19650 PF00311 Phosphoenolpyruvate carboxylase LK04_RS19655 PF07687 Peptidase dimerisation domain LK04_RS19655 PF01546 Peptidase family M20/M25/M40 LK04_RS19660 PF02774 Semialdehyde dehydrogenase, dimerisation domain LK04_RS19660 PF01118 Semialdehyde dehydrogenase, NAD binding domain LK04_RS19665 PF00696 Amino acid kinase family LK04_RS19670 PF00764 Arginosuccinate synthase LK04_RS19675 PF00206 Lyase LK04_RS19675 PF14698 Argininosuccinate lyase C-terminal LK04_RS19680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS19680 PF03466 LysR substrate binding domain LK04_RS19685 PF07992 Pyridine nucleotide-disulphide oxidoreductase LK04_RS19685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LK04_RS19690 PF00440 Bacterial regulatory proteins, tetR family LK04_RS19695 PF07226 Protein of unknown function (DUF1422) LK04_RS19700 PF05958 tRNA (Uracil-5-)-methyltransferase LK04_RS19705 PF07715 TonB-dependent Receptor Plug Domain LK04_RS19705 PF00593 TonB dependent receptor LK04_RS19710 PF01177 Asp/Glu/Hydantoin racemase LK04_RS19755 PF03466 LysR substrate binding domain LK04_RS19755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS19760 PF04219 Protein of unknown function, DUF LK04_RS19765 PF13335 Magnesium chelatase, subunit ChlI C-terminal LK04_RS19765 PF01078 Magnesium chelatase, subunit ChlI LK04_RS19770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LK04_RS19770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LK04_RS19770 PF00205 Thiamine pyrophosphate enzyme, central domain LK04_RS19780 PF01063 Amino-transferase class IV LK04_RS19785 PF00920 Dehydratase family LK04_RS19790 PF00585 C-terminal regulatory domain of Threonine dehydratase LK04_RS19790 PF00291 Pyridoxal-phosphate dependent enzyme LK04_RS19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS19795 PF03466 LysR substrate binding domain LK04_RS19800 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LK04_RS19800 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LK04_RS19805 PF07690 Major Facilitator Superfamily LK04_RS19805 PF00083 Sugar (and other) transporter LK04_RS19810 PF03631 Virulence factor BrkB LK04_RS19815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LK04_RS19815 PF03466 LysR substrate binding domain LK04_RS19825 PF02567 Phenazine biosynthesis-like protein LK04_RS19830 PF13417 Glutathione S-transferase, N-terminal domain LK04_RS19830 PF00043 Glutathione S-transferase, C-terminal domain LK04_RS19835 PF00155 Aminotransferase class I and II LK04_RS19835 PF00392 Bacterial regulatory proteins, gntR family LK04_RS19850 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system LK04_RS19855 PF06039 Malate:quinone oxidoreductase (Mqo) LK04_RS19860 PF06643 Protein of unknown function (DUF1158) LK04_RS19865 PF02659 Putative manganese efflux pump LK04_RS19875 PF13378 Enolase C-terminal domain-like LK04_RS19875 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LK04_RS19880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LK04_RS19880 PF00005 ABC transporter LK04_RS19885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LK04_RS19890 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS19895 PF00528 Binding-protein-dependent transport system inner membrane component LK04_RS19895 PF12911 N-terminal TM domain of oligopeptide transport permease C LK04_RS19910 PF10832 Protein of unknown function (DUF2559) LK04_RS19915 PF01396 Topoisomerase DNA binding C4 zinc finger LK04_RS19925 PF00436 Single-strand binding protein family LK04_RS19940 PF13276 HTH-like domain LK04_RS19940 PF13683 Integrase core domain LK04_RS19960 PF07043 Protein of unknown function (DUF1328) LK04_RS19980 PF00005 ABC transporter LK04_RS19995 PF07191 zinc-ribbons LK04_RS20025 PF03692 Putative zinc- or iron-chelating domain LK04_RS20030 PF01679 Proteolipid membrane potential modulator LK04_RS20040 PF04606 Ogr/Delta-like zinc finger LK04_RS20100 PF08042 PqqA family LK04_RS20130 PF10685 Stress-induced bacterial acidophilic repeat motif LK04_RS20135 PF04957 Ribosome modulation factor LK04_RS20155 PF10766 Multidrug efflux pump-associated protein AcrZ LK04_RS20175 PF10689 Protein of unknown function (DUF2496) LK04_RS20180 PF00444 Ribosomal protein L36 LK04_RS20225 PF01809 Putative membrane protein insertion efficiency factor LK04_RS20230 PF00468 Ribosomal protein L34 LK04_RS20245 PF03458 UPF0126 domain LK04_RS20250 PF08046 IlvGEDA operon leader peptide LK04_RS20305 PF07484 Phage Tail Collar Domain LK04_RS20315 PF04717 Type VI secretion system, phage-baseplate injector LK04_RS20315 PF06715 Gp5 C-terminal repeat (3 copies)