PB2503_RS00085	SM00487	DEAD-like helicases superfamily
PB2503_RS00085	SM00490	helicase superfamily c-terminal domain
PB2503_RS00260	SM00487	DEAD-like helicases superfamily
PB2503_RS00260	SM00490	helicase superfamily c-terminal domain
PB2503_RS00275	SM00363	S4 RNA-binding domain
PB2503_RS00275	SM01390	PB2503_RS00275
PB2503_RS00285	SM00855	Phosphoglycerate mutase family
PB2503_RS00300	SM00487	DEAD-like helicases superfamily
PB2503_RS00300	SM00490	helicase superfamily c-terminal domain
PB2503_RS00300	SM00982	PB2503_RS00300
PB2503_RS00300	SM01058	CarD-like/TRCF domain
PB2503_RS00335	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS00340	SM01005	Alanine racemase, C-terminal domain
PB2503_RS00350	SM00363	S4 RNA-binding domain
PB2503_RS00370	SM00116	Domain in cystathionine beta-synthase and other proteins.
PB2503_RS00370	SM01091	Transporter associated domain
PB2503_RS00385	SM00271	DnaJ molecular chaperone homology domain
PB2503_RS00400	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS00410	SM00882	Coenzyme A transferase
PB2503_RS00415	SM00882	Coenzyme A transferase
PB2503_RS00425	SM01007	Class II Aldolase and Adducin N-terminal domain
PB2503_RS00435	SM00052	Putative diguanylate phosphodiesterase
PB2503_RS00465	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS00475	SM01080	PB2503_RS00475
PB2503_RS00615	SM00347	helix_turn_helix multiple antibiotic resistance protein
PB2503_RS00620	SM01004	Delta-aminolevulinic acid dehydratase
PB2503_RS00625	SM00903	Flavin reductase like domain
PB2503_RS00640	SM00822	PB2503_RS00640
PB2503_RS00645	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS00645	SM00994	ClpX C4-type zinc finger
PB2503_RS00645	SM01086	C-terminal, D2-small domain, of ClpB protein
PB2503_RS00715	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS00715	SM01086	C-terminal, D2-small domain, of ClpB protein
PB2503_RS00755	SM00267	diguanylate cyclase
PB2503_RS00755	SM00448	cheY-homologous receiver domain
PB2503_RS00760	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PB2503_RS00760	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PB2503_RS00760	SM00091	PAS domain
PB2503_RS00760	SM00387	Histidine kinase-like ATPases
PB2503_RS00760	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS00795	SM00448	cheY-homologous receiver domain
PB2503_RS00835	SM00411	bacterial (prokaryotic) histone like domain
PB2503_RS00890	SM00487	DEAD-like helicases superfamily
PB2503_RS00890	SM00490	helicase superfamily c-terminal domain
PB2503_RS00905	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS00905	SM00448	cheY-homologous receiver domain
PB2503_RS00910	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS00910	SM00387	Histidine kinase-like ATPases
PB2503_RS00910	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS00930	SM00986	Uracil DNA glycosylase superfamily
PB2503_RS00930	SM00987	UreE urease accessory protein, C-terminal domain 
PB2503_RS00970	SM00344	helix_turn_helix ASNC type
PB2503_RS00985	SM00387	Histidine kinase-like ATPases
PB2503_RS00985	SM00433	TopoisomeraseII
PB2503_RS00990	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS00995	SM00480	DNA polymerase III beta subunit
PB2503_RS01000	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS01000	SM00760	Bacterial dnaA protein helix-turn-helix domain
PB2503_RS01010	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
PB2503_RS01010	SM01232	PB2503_RS01010
PB2503_RS01040	SM00883	Chaperonin 10 Kd subunit
PB2503_RS01070	SM00829	Enoylreductase
PB2503_RS01095	SM00822	PB2503_RS01095
PB2503_RS01120	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PB2503_RS01135	SM01234	PB2503_RS01135
PB2503_RS01155	SM00840	PB2503_RS01155
PB2503_RS01225	SM00316	Ribosomal protein S1-like RNA-binding domain
PB2503_RS01240	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS01270	SM00487	DEAD-like helicases superfamily
PB2503_RS01270	SM00490	helicase superfamily c-terminal domain
PB2503_RS01305	SM00971	Serine acetyltransferase, N-terminal
PB2503_RS01375	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
PB2503_RS01400	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
PB2503_RS01425	SM00091	PAS domain
PB2503_RS01425	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS01425	SM00387	Histidine kinase-like ATPases
PB2503_RS01425	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS01475	SM00487	DEAD-like helicases superfamily
PB2503_RS01475	SM00490	helicase superfamily c-terminal domain
PB2503_RS01500	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS01500	SM00387	Histidine kinase-like ATPases
PB2503_RS01500	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS01505	SM00448	cheY-homologous receiver domain
PB2503_RS01505	SM00862	Transcriptional regulatory protein, C terminal
PB2503_RS01525	SM00226	Low molecular weight phosphatase family
PB2503_RS01595	SM00387	Histidine kinase-like ATPases
PB2503_RS01595	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS01595	SM00448	cheY-homologous receiver domain
PB2503_RS01600	SM00829	Enoylreductase
PB2503_RS01625	SM00729	Elongator protein 3, MiaB family, Radical SAM
PB2503_RS01640	SM00478	endonuclease III
PB2503_RS01745	SM00487	DEAD-like helicases superfamily
PB2503_RS01745	SM00490	helicase superfamily c-terminal domain
PB2503_RS01755	SM00836	DALR anticodon binding domain
PB2503_RS01755	SM01016	Arginyl tRNA synthetase N terminal dom
PB2503_RS01825	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PB2503_RS01825	SM00091	PAS domain
PB2503_RS01825	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PB2503_RS01830	SM00342	helix_turn_helix, arabinose operon control protein
PB2503_RS01830	SM00871	Bacterial transcription activator, effector binding domain
PB2503_RS01835	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS01835	SM00387	Histidine kinase-like ATPases
PB2503_RS01835	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS01835	SM00448	cheY-homologous receiver domain
PB2503_RS01845	SM01018	B12 binding domain
PB2503_RS01855	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PB2503_RS01875	SM00650	Ribosomal RNA adenine dimethylases
PB2503_RS01885	SM00845	GatB domain
PB2503_RS01910	SM00732	Likely ribonuclease with RNase H fold.
PB2503_RS01920	SM01207	PB2503_RS01920
PB2503_RS01925	SM01230	PB2503_RS01925
PB2503_RS01930	SM00267	diguanylate cyclase
PB2503_RS01930	SM00448	cheY-homologous receiver domain
PB2503_RS01935	SM00448	cheY-homologous receiver domain
PB2503_RS01975	SM00935	Outer membrane protein (OmpH-like)
PB2503_RS01985	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PB2503_RS02050	SM00822	PB2503_RS02050
PB2503_RS02085	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PB2503_RS02185	SM00904	Riboflavin kinase
PB2503_RS02200	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS02250	SM00671	Sel1-like repeats.
PB2503_RS02270	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PB2503_RS02275	SM00861	Transketolase, pyrimidine binding domain
PB2503_RS02310	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS02345	SM00849	Metallo-beta-lactamase superfamily
PB2503_RS02370	SM00028	Tetratricopeptide repeats
PB2503_RS02400	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
PB2503_RS02400	SM00534	ATPase domain of DNA mismatch repair MUTS family
PB2503_RS02445	SM00798	AICARFT/IMPCHase bienzyme
PB2503_RS02445	SM00851	MGS-like domain
PB2503_RS02450	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
PB2503_RS02490	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS02495	SM00387	Histidine kinase-like ATPases
PB2503_RS02495	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS02495	SM00448	cheY-homologous receiver domain
PB2503_RS02500	SM00729	Elongator protein 3, MiaB family, Radical SAM
PB2503_RS02525	SM01126	PB2503_RS02525
PB2503_RS02625	SM00642	Alpha-amylase domain
PB2503_RS02665	SM00054	EF-hand, calcium binding motif
PB2503_RS02680	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS02725	SM00271	DnaJ molecular chaperone homology domain
PB2503_RS02735	SM00760	Bacterial dnaA protein helix-turn-helix domain
PB2503_RS02820	SM01001	AIR carboxylase
PB2503_RS02900	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PB2503_RS02950	SM00849	Metallo-beta-lactamase superfamily
PB2503_RS02955	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PB2503_RS03005	SM00487	DEAD-like helicases superfamily
PB2503_RS03005	SM00490	helicase superfamily c-terminal domain
PB2503_RS03065	SM00950	PB2503_RS03065
PB2503_RS03130	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS03195	SM00530	Helix-turn-helix XRE-family like proteins 
PB2503_RS03205	SM00470	ParB-like nuclease domain
PB2503_RS03280	SM00464	Found in ATP-dependent protease La (LON)
PB2503_RS03300	SM00825	Beta-ketoacyl synthase
PB2503_RS03355	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PB2503_RS03355	SM00091	PAS domain
PB2503_RS03355	SM00387	Histidine kinase-like ATPases
PB2503_RS03360	SM00493	PB2503_RS03360
PB2503_RS03365	SM00829	Enoylreductase
PB2503_RS03395	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS03410	SM00487	DEAD-like helicases superfamily
PB2503_RS03410	SM00490	helicase superfamily c-terminal domain
PB2503_RS03415	SM00226	Low molecular weight phosphatase family
PB2503_RS03425	SM00387	Histidine kinase-like ATPases
PB2503_RS03425	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS03425	SM00448	cheY-homologous receiver domain
PB2503_RS03430	SM00996	S-adenosyl-L-homocysteine hydrolase
PB2503_RS03430	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
PB2503_RS03480	SM00347	helix_turn_helix multiple antibiotic resistance protein
PB2503_RS03510	SM00448	cheY-homologous receiver domain
PB2503_RS03510	SM00862	Transcriptional regulatory protein, C terminal
PB2503_RS03515	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS03515	SM00387	Histidine kinase-like ATPases
PB2503_RS03515	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS03550	SM00838	Elongation factor G C-terminus
PB2503_RS03565	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS03600	SM00729	Elongator protein 3, MiaB family, Radical SAM
PB2503_RS03605	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS03605	SM00962	SRP54-type protein, GTPase domain
PB2503_RS03605	SM00963	SRP54-type protein, helical bundle domain
PB2503_RS03625	SM00347	helix_turn_helix multiple antibiotic resistance protein
PB2503_RS03660	SM00843	PB2503_RS03660
PB2503_RS03685	SM00271	DnaJ molecular chaperone homology domain
PB2503_RS03725	SM00563	Phosphate acyltransferases
PB2503_RS03745	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
PB2503_RS03750	SM00478	endonuclease III
PB2503_RS03750	SM00525	PB2503_RS03750
PB2503_RS03770	SM00729	Elongator protein 3, MiaB family, Radical SAM
PB2503_RS03785	SM00116	Domain in cystathionine beta-synthase and other proteins.
PB2503_RS03785	SM01091	Transporter associated domain
PB2503_RS03795	SM00530	Helix-turn-helix XRE-family like proteins 
PB2503_RS03825	SM00316	Ribosomal protein S1-like RNA-binding domain
PB2503_RS03825	SM00322	K homology RNA-binding domain
PB2503_RS03855	SM00448	cheY-homologous receiver domain
PB2503_RS03860	SM00387	Histidine kinase-like ATPases
PB2503_RS03860	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS03875	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
PB2503_RS03875	SM00474	3'-5' exonuclease
PB2503_RS03875	SM00475	5'-3' exonuclease
PB2503_RS03875	SM00482	DNA polymerase A domain
PB2503_RS03895	SM00028	Tetratricopeptide repeats
PB2503_RS03900	SM00479	PB2503_RS03900
PB2503_RS03935	SM00357	Cold shock protein domain
PB2503_RS03935	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS03935	SM00959	Rho termination factor, N-terminal domain
PB2503_RS03965	SM01228	PB2503_RS03965
PB2503_RS03980	SM00470	ParB-like nuclease domain
PB2503_RS04020	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS04020	SM00962	SRP54-type protein, GTPase domain
PB2503_RS04020	SM00963	SRP54-type protein, helical bundle domain
PB2503_RS04045	SM00873	B3/4 domain
PB2503_RS04045	SM00874	tRNA synthetase B5 domain
PB2503_RS04045	SM00896	Ferredoxin-fold anticodon binding domain
PB2503_RS04070	SM00463	Small MutS-related domain
PB2503_RS04075	SM00925	MltA specific insert domain
PB2503_RS04095	SM00448	cheY-homologous receiver domain
PB2503_RS04145	SM00411	bacterial (prokaryotic) histone like domain
PB2503_RS04170	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS04240	SM00796	Allophanate hydrolase subunit 1
PB2503_RS04245	SM00797	Allophanate hydrolase subunit 2
PB2503_RS04270	SM00862	Transcriptional regulatory protein, C terminal
PB2503_RS04375	SM00919	Malic enzyme, NAD binding domain
PB2503_RS04375	SM01274	PB2503_RS04375
PB2503_RS04385	SM00932	Scaffold protein Nfu/NifU N terminal
PB2503_RS04405	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
PB2503_RS04420	SM00530	Helix-turn-helix XRE-family like proteins 
PB2503_RS04640	SM00867	YceI-like domain 
PB2503_RS04685	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PB2503_RS04685	SM00245	tail specific protease
PB2503_RS04725	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS04780	SM00342	helix_turn_helix, arabinose operon control protein
PB2503_RS04795	SM00869	Autotransporter beta-domain
PB2503_RS04925	SM00387	Histidine kinase-like ATPases
PB2503_RS04925	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS04930	SM00028	Tetratricopeptide repeats
PB2503_RS04970	SM00316	Ribosomal protein S1-like RNA-binding domain
PB2503_RS04970	SM00322	K homology RNA-binding domain
PB2503_RS05050	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS05050	SM01086	C-terminal, D2-small domain, of ClpB protein
PB2503_RS05070	SM01387	PB2503_RS05070
PB2503_RS05075	SM00387	Histidine kinase-like ATPases
PB2503_RS05080	SM00448	cheY-homologous receiver domain
PB2503_RS05120	SM00470	ParB-like nuclease domain
PB2503_RS05230	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS05275	SM00950	PB2503_RS05275
PB2503_RS05345	SM00487	DEAD-like helicases superfamily
PB2503_RS05420	SM00470	ParB-like nuclease domain
PB2503_RS05455	SM00857	Resolvase, N terminal domain
PB2503_RS05515	SM00487	DEAD-like helicases superfamily
PB2503_RS05515	SM00490	helicase superfamily c-terminal domain
PB2503_RS05530	SM00950	PB2503_RS05530
PB2503_RS05645	SM00849	Metallo-beta-lactamase superfamily
PB2503_RS05650	SM00347	helix_turn_helix multiple antibiotic resistance protein
PB2503_RS05785	SM01329	PB2503_RS05785
PB2503_RS05830	SM00448	cheY-homologous receiver domain
PB2503_RS05835	SM00474	3'-5' exonuclease
PB2503_RS05850	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS05890	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS05910	SM00387	Histidine kinase-like ATPases
PB2503_RS05910	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS05920	SM00448	cheY-homologous receiver domain
PB2503_RS05920	SM00862	Transcriptional regulatory protein, C terminal
PB2503_RS05935	SM00849	Metallo-beta-lactamase superfamily
PB2503_RS05985	SM00028	Tetratricopeptide repeats
PB2503_RS06025	SM00387	Histidine kinase-like ATPases
PB2503_RS06090	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS06270	SM00112	Cadherin repeats.
PB2503_RS06380	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS06450	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS06520	SM00357	Cold shock protein domain
PB2503_RS06545	SM00460	Transglutaminase/protease-like homologues
PB2503_RS06610	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PB2503_RS06715	SM00763	PrkA AAA domain
PB2503_RS06750	SM00387	Histidine kinase-like ATPases
PB2503_RS06750	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS06750	SM00448	cheY-homologous receiver domain
PB2503_RS06820	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS06850	SM00091	PAS domain
PB2503_RS06850	SM00387	Histidine kinase-like ATPases
PB2503_RS06850	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS06855	SM00421	helix_turn_helix, Lux Regulon
PB2503_RS06855	SM00448	cheY-homologous receiver domain
PB2503_RS06860	SM00419	helix_turn_helix, cAMP Regulatory protein
PB2503_RS06890	SM00028	Tetratricopeptide repeats
PB2503_RS06925	SM00822	PB2503_RS06925
PB2503_RS06925	SM00825	Beta-ketoacyl synthase
PB2503_RS06925	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PB2503_RS06930	SM00825	Beta-ketoacyl synthase
PB2503_RS06930	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PB2503_RS06975	SM00387	Histidine kinase-like ATPases
PB2503_RS06975	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS07005	SM00387	Histidine kinase-like ATPases
PB2503_RS07010	SM00421	helix_turn_helix, Lux Regulon
PB2503_RS07010	SM00448	cheY-homologous receiver domain
PB2503_RS07025	SM00448	cheY-homologous receiver domain
PB2503_RS07030	SM00448	cheY-homologous receiver domain
PB2503_RS07050	SM00260	Two component signalling adaptor domain
PB2503_RS07050	SM00387	Histidine kinase-like ATPases
PB2503_RS07050	SM01231	PB2503_RS07050
PB2503_RS07055	SM00260	Two component signalling adaptor domain
PB2503_RS07060	SM00138	Methyltransferase, chemotaxis proteins 
PB2503_RS07065	SM00448	cheY-homologous receiver domain
PB2503_RS07085	SM00347	helix_turn_helix multiple antibiotic resistance protein
PB2503_RS07095	SM00028	Tetratricopeptide repeats
PB2503_RS07120	SM00421	helix_turn_helix, Lux Regulon
PB2503_RS07120	SM00448	cheY-homologous receiver domain
PB2503_RS07125	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PB2503_RS07125	SM00091	PAS domain
PB2503_RS07125	SM00387	Histidine kinase-like ATPases
PB2503_RS07125	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS07130	SM00448	cheY-homologous receiver domain
PB2503_RS07165	SM00487	DEAD-like helicases superfamily
PB2503_RS07190	SM00841	Elongation factor P, C-terminal
PB2503_RS07190	SM01185	PB2503_RS07190
PB2503_RS07195	SM00052	Putative diguanylate phosphodiesterase
PB2503_RS07195	SM00267	diguanylate cyclase
PB2503_RS07240	SM00671	Sel1-like repeats.
PB2503_RS07260	SM00363	S4 RNA-binding domain
PB2503_RS07285	SM00880	PB2503_RS07285
PB2503_RS07505	SM00986	Uracil DNA glycosylase superfamily
PB2503_RS07505	SM00987	UreE urease accessory protein, C-terminal domain 
PB2503_RS07515	SM00387	Histidine kinase-like ATPases
PB2503_RS07515	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS07620	SM00271	DnaJ molecular chaperone homology domain
PB2503_RS07625	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PB2503_RS07630	SM00448	cheY-homologous receiver domain
PB2503_RS07630	SM00862	Transcriptional regulatory protein, C terminal
PB2503_RS07640	SM00411	bacterial (prokaryotic) histone like domain
PB2503_RS07685	SM00530	Helix-turn-helix XRE-family like proteins 
PB2503_RS07750	SM00851	MGS-like domain
PB2503_RS07750	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
PB2503_RS07760	SM00344	helix_turn_helix ASNC type
PB2503_RS07770	SM00849	Metallo-beta-lactamase superfamily
PB2503_RS07795	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS07830	SM00986	Uracil DNA glycosylase superfamily
PB2503_RS07830	SM00987	UreE urease accessory protein, C-terminal domain 
PB2503_RS07845	SM01409	PB2503_RS07845
PB2503_RS07850	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PB2503_RS07850	SM00954	Region found in RelA / SpoT proteins
PB2503_RS07875	SM00358	Double-stranded RNA binding motif
PB2503_RS07875	SM00535	Ribonuclease III family
PB2503_RS07890	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PB2503_RS07890	SM00465	GIY-YIG type nucleases (URI domain)
PB2503_RS07905	SM00357	Cold shock protein domain
PB2503_RS07925	SM00116	Domain in cystathionine beta-synthase and other proteins.
PB2503_RS07955	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PB2503_RS07955	SM00911	HWE histidine kinase
PB2503_RS07960	SM00829	Enoylreductase
PB2503_RS07970	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS07970	SM00464	Found in ATP-dependent protease La (LON)
PB2503_RS07975	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS07975	SM00962	SRP54-type protein, GTPase domain
PB2503_RS08005	SM00864	Tubulin/FtsZ family, GTPase domain
PB2503_RS08005	SM00865	Tubulin/FtsZ family, C-terminal domain
PB2503_RS08070	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS08180	SM01400	PB2503_RS08180
PB2503_RS08230	SM00861	Transketolase, pyrimidine binding domain
PB2503_RS08235	SM00363	S4 RNA-binding domain
PB2503_RS08260	SM00830	Chorismate mutase type II
PB2503_RS08300	SM00474	3'-5' exonuclease
PB2503_RS08315	SM00861	Transketolase, pyrimidine binding domain
PB2503_RS08425	SM00530	Helix-turn-helix XRE-family like proteins 
PB2503_RS08450	SM00867	YceI-like domain 
PB2503_RS08455	SM00867	YceI-like domain 
PB2503_RS08470	SM00481	DNA polymerase alpha chain like domain
PB2503_RS08480	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
PB2503_RS08480	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PB2503_RS08485	SM00448	cheY-homologous receiver domain
PB2503_RS08485	SM00862	Transcriptional regulatory protein, C terminal
PB2503_RS08505	SM00244	prohibitin homologues
PB2503_RS08510	SM00244	prohibitin homologues
PB2503_RS08515	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PB2503_RS08535	SM01211	PB2503_RS08535
PB2503_RS08595	SM00292	breast cancer carboxy-terminal domain
PB2503_RS08595	SM00532	Ligase N family
PB2503_RS08600	SM00822	PB2503_RS08600
PB2503_RS08615	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PB2503_RS08620	SM00984	UDP binding domain
PB2503_RS08635	SM00091	PAS domain
PB2503_RS08635	SM00387	Histidine kinase-like ATPases
PB2503_RS08635	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS08635	SM00448	cheY-homologous receiver domain
PB2503_RS08640	SM00421	helix_turn_helix, Lux Regulon
PB2503_RS08640	SM00448	cheY-homologous receiver domain
PB2503_RS08675	SM00460	Transglutaminase/protease-like homologues
PB2503_RS08725	SM00434	DNA Topoisomerase IV
PB2503_RS08740	SM00347	helix_turn_helix multiple antibiotic resistance protein
PB2503_RS08855	SM00663	RNA polymerase I subunit A N-terminus
PB2503_RS08870	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
PB2503_RS08885	SM00838	Elongation factor G C-terminus
PB2503_RS08885	SM00889	Elongation factor G, domain IV
PB2503_RS08895	SM01403	PB2503_RS08895
PB2503_RS08915	SM01382	PB2503_RS08915
PB2503_RS08915	SM01383	PB2503_RS08915
PB2503_RS08930	SM00322	K homology RNA-binding domain
PB2503_RS08950	SM01374	PB2503_RS08950
PB2503_RS08955	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PB2503_RS09020	SM00662	RNA polymerases D
PB2503_RS09030	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PB2503_RS09035	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS09060	SM00853	MutL C terminal dimerisation domain
PB2503_RS09060	SM01340	PB2503_RS09060
PB2503_RS09070	SM00387	Histidine kinase-like ATPases
PB2503_RS09070	SM00433	TopoisomeraseII
PB2503_RS09210	SM00878	Biotin carboxylase C-terminal domain
PB2503_RS09255	SM00028	Tetratricopeptide repeats
PB2503_RS09325	SM00867	YceI-like domain 
PB2503_RS09355	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS09410	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PB2503_RS09435	SM00649	Ribosomal protein L11/L12
PB2503_RS09445	SM00710	Parallel beta-helix repeats
PB2503_RS09450	SM00671	Sel1-like repeats.
PB2503_RS09465	SM00530	Helix-turn-helix XRE-family like proteins 
PB2503_RS09485	SM00937	PB2503_RS09485
PB2503_RS09500	SM00855	Phosphoglycerate mutase family
PB2503_RS09505	SM00881	CoA binding domain
PB2503_RS09510	SM00861	Transketolase, pyrimidine binding domain
PB2503_RS09525	SM00100	Cyclic nucleotide-monophosphate binding domain
PB2503_RS09525	SM00419	helix_turn_helix, cAMP Regulatory protein
PB2503_RS09530	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
PB2503_RS09575	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PB2503_RS09575	SM00448	cheY-homologous receiver domain
PB2503_RS09575	SM00911	HWE histidine kinase
PB2503_RS09590	SM00448	cheY-homologous receiver domain
PB2503_RS09605	SM00387	Histidine kinase-like ATPases
PB2503_RS09605	SM00911	HWE histidine kinase
PB2503_RS09670	SM00434	DNA Topoisomerase IV
PB2503_RS09715	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
PB2503_RS09715	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
PB2503_RS09715	SM00493	PB2503_RS09715
PB2503_RS09755	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS09755	SM01086	C-terminal, D2-small domain, of ClpB protein
PB2503_RS09785	SM01323	PB2503_RS09785
PB2503_RS09895	SM00822	PB2503_RS09895
PB2503_RS09905	SM00998	Adenylosuccinate lyase C-terminus
PB2503_RS10110	SM00562	PB2503_RS10110
PB2503_RS10120	SM00967	RNA 2'-O ribose methyltransferase substrate binding
PB2503_RS10145	SM00316	Ribosomal protein S1-like RNA-binding domain
PB2503_RS10145	SM00955	PB2503_RS10145
PB2503_RS10175	SM00327	von Willebrand factor (vWF) type A domain
PB2503_RS10215	SM00387	Histidine kinase-like ATPases
PB2503_RS10215	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS10220	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PB2503_RS10220	SM00387	Histidine kinase-like ATPases
PB2503_RS10230	SM01058	CarD-like/TRCF domain
PB2503_RS10245	SM00947	Carbonic anhydrase
PB2503_RS10250	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS10250	SM00448	cheY-homologous receiver domain
PB2503_RS10260	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
PB2503_RS10260	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
PB2503_RS10290	SM00855	Phosphoglycerate mutase family
PB2503_RS10325	SM00938	Nitrogen regulatory protein P-II
PB2503_RS10355	SM00829	Enoylreductase
PB2503_RS10375	SM00344	helix_turn_helix ASNC type
PB2503_RS10395	SM00116	Domain in cystathionine beta-synthase and other proteins.
PB2503_RS10395	SM01240	PB2503_RS10395
PB2503_RS10485	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PB2503_RS10525	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS10555	SM00936	Penicillin-binding protein 5, C-terminal domain 
PB2503_RS10565	SM01329	PB2503_RS10565
PB2503_RS10570	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS10580	SM00507	HNH nucleases
PB2503_RS10650	SM00072	Guanylate kinase homologues.
PB2503_RS10665	SM00825	Beta-ketoacyl synthase
PB2503_RS10675	SM00822	PB2503_RS10675
PB2503_RS10680	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PB2503_RS10685	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS10810	SM01359	PB2503_RS10810
PB2503_RS10810	SM01360	PB2503_RS10810
PB2503_RS10830	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS11000	SM01092	CO dehydrogenase flavoprotein C-terminal domain
PB2503_RS11005	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PB2503_RS11100	SM00852	Probable molybdopterin binding domain
PB2503_RS11115	SM00869	Autotransporter beta-domain
PB2503_RS11120	SM00867	YceI-like domain 
PB2503_RS11220	SM00116	Domain in cystathionine beta-synthase and other proteins.
PB2503_RS11220	SM00924	MgtE intracellular N domain
PB2503_RS11230	SM00849	Metallo-beta-lactamase superfamily
PB2503_RS11270	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS11285	SM00267	diguanylate cyclase
PB2503_RS11365	SM00098	Alkaline phosphatase homologues
PB2503_RS11390	SM00788	Adenylosuccinate synthetase
PB2503_RS11400	SM00271	DnaJ molecular chaperone homology domain
PB2503_RS11405	SM00357	Cold shock protein domain
PB2503_RS11430	SM01130	PB2503_RS11430
PB2503_RS11455	SM00729	Elongator protein 3, MiaB family, Radical SAM
PB2503_RS11465	SM01192	PB2503_RS11465
PB2503_RS11465	SM01193	PB2503_RS11465
PB2503_RS11485	SM00411	bacterial (prokaryotic) histone like domain
PB2503_RS11490	SM00490	helicase superfamily c-terminal domain
PB2503_RS11500	SM00387	Histidine kinase-like ATPases
PB2503_RS11500	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS11500	SM00448	cheY-homologous receiver domain
PB2503_RS11520	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS11545	SM00905	Dihydroneopterin aldolase
PB2503_RS11560	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS11650	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS11650	SM00387	Histidine kinase-like ATPases
PB2503_RS11660	SM00448	cheY-homologous receiver domain
PB2503_RS11660	SM00862	Transcriptional regulatory protein, C terminal
PB2503_RS11765	SM00450	Rhodanese Homology Domain
PB2503_RS11765	SM00849	Metallo-beta-lactamase superfamily
PB2503_RS11840	SM00422	helix_turn_helix, mercury resistance
PB2503_RS11905	SM00470	ParB-like nuclease domain
PB2503_RS11955	SM00530	Helix-turn-helix XRE-family like proteins 
PB2503_RS12010	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS12110	SM00116	Domain in cystathionine beta-synthase and other proteins.
PB2503_RS12125	SM00448	cheY-homologous receiver domain
PB2503_RS12125	SM00862	Transcriptional regulatory protein, C terminal
PB2503_RS12130	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS12130	SM00387	Histidine kinase-like ATPases
PB2503_RS12130	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS12135	SM00564	beta-propeller repeat
PB2503_RS12175	SM00829	Enoylreductase
PB2503_RS12215	SM00244	prohibitin homologues
PB2503_RS12220	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PB2503_RS12325	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS12335	SM01209	PB2503_RS12335
PB2503_RS12335	SM01210	PB2503_RS12335
PB2503_RS12390	SM00957	SecA DEAD-like domain
PB2503_RS12390	SM00958	SecA preprotein cross-linking domain
PB2503_RS12400	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS12430	SM00937	PB2503_RS12430
PB2503_RS12545	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
PB2503_RS12565	SM00400	zinc finger
PB2503_RS12565	SM00493	PB2503_RS12565
PB2503_RS12585	SM00644	PB2503_RS12585
PB2503_RS12595	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS12775	SM00893	Electron transfer flavoprotein domain
PB2503_RS12780	SM00893	Electron transfer flavoprotein domain
PB2503_RS12785	SM00852	Probable molybdopterin binding domain
PB2503_RS12815	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS12815	SM00387	Histidine kinase-like ATPases
PB2503_RS12815	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS12815	SM00448	cheY-homologous receiver domain
PB2503_RS12820	SM00448	cheY-homologous receiver domain
PB2503_RS12825	SM00387	Histidine kinase-like ATPases
PB2503_RS12825	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS12825	SM00448	cheY-homologous receiver domain
PB2503_RS12845	SM00387	Histidine kinase-like ATPases
PB2503_RS12845	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS12845	SM00448	cheY-homologous receiver domain
PB2503_RS12905	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS12910	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS12915	SM00419	helix_turn_helix, cAMP Regulatory protein
PB2503_RS12920	SM00448	cheY-homologous receiver domain
PB2503_RS12970	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
PB2503_RS12980	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS13020	SM00448	cheY-homologous receiver domain
PB2503_RS13020	SM01012	PB2503_RS13020
PB2503_RS13030	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PB2503_RS13050	SM00852	Probable molybdopterin binding domain
PB2503_RS13060	SM00220	Serine/Threonine protein kinases, catalytic domain
PB2503_RS13060	SM00331	Sigma factor PP2C-like phosphatases
PB2503_RS13060	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
PB2503_RS13070	SM00852	Probable molybdopterin binding domain
PB2503_RS13085	SM00729	Elongator protein 3, MiaB family, Radical SAM
PB2503_RS13120	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS13145	SM00382	ATPases associated with a variety of cellular activities
PB2503_RS13195	SM00966	SpoVT / AbrB like domain 
PB2503_RS13300	SM00822	PB2503_RS13300
PB2503_RS13380	SM00953	PB2503_RS13380
PB2503_RS13420	SM00448	cheY-homologous receiver domain
PB2503_RS13420	SM00862	Transcriptional regulatory protein, C terminal
PB2503_RS13425	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS13425	SM00387	Histidine kinase-like ATPases
PB2503_RS13425	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS13460	SM00422	helix_turn_helix, mercury resistance
PB2503_RS13520	SM00014	Acid phosphatase homologues
PB2503_RS13545	SM00448	cheY-homologous receiver domain
PB2503_RS13545	SM00862	Transcriptional regulatory protein, C terminal
PB2503_RS13585	SM00530	Helix-turn-helix XRE-family like proteins 
PB2503_RS13625	SM00448	cheY-homologous receiver domain
PB2503_RS13630	SM00422	helix_turn_helix, mercury resistance
PB2503_RS13635	SM00849	Metallo-beta-lactamase superfamily
PB2503_RS13670	SM00028	Tetratricopeptide repeats
PB2503_RS13690	SM00563	Phosphate acyltransferases
PB2503_RS13775	SM00855	Phosphoglycerate mutase family
PB2503_RS13790	SM00978	PB2503_RS13790
PB2503_RS13835	SM00858	PB2503_RS13835
PB2503_RS13840	SM00028	Tetratricopeptide repeats
PB2503_RS13900	SM00052	Putative diguanylate phosphodiesterase
PB2503_RS13910	SM00671	Sel1-like repeats.
PB2503_RS13970	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS13970	SM00387	Histidine kinase-like ATPases
PB2503_RS13970	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS13975	SM00387	Histidine kinase-like ATPases
PB2503_RS13975	SM00388	His Kinase A (phosphoacceptor) domain
PB2503_RS13995	SM00257	Lysin motif
PB2503_RS14000	SM00091	PAS domain
PB2503_RS14000	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PB2503_RS14000	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PB2503_RS14025	SM00448	cheY-homologous receiver domain
PB2503_RS14045	SM00646	PB2503_RS14045
PB2503_RS14055	SM00530	Helix-turn-helix XRE-family like proteins 
PB2503_RS14070	SM00257	Lysin motif
PB2503_RS14180	SM00387	Histidine kinase-like ATPases
PB2503_RS14180	SM00388	His Kinase A (phosphoacceptor) domain
