locus-tag	class	description
PmCQ2_RS00010	COG0592	DNA-directed DNA polymerase activity
PmCQ2_RS00020	COG2226	methyltransferase
PmCQ2_RS00045	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
PmCQ2_RS00075	COG3306	glycosyltransferase involved in LPS biosynthesis
PmCQ2_RS00090	COG1216	Glycosyl transferase, family 2
PmCQ2_RS00095	COG1442	glycosyl transferase family 8
PmCQ2_RS00100	COG0438	transferase activity, transferring glycosyl groups
PmCQ2_RS00105	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
PmCQ2_RS00110	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
PmCQ2_RS00115	COG1309	transcriptional regulator
PmCQ2_RS00120	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PmCQ2_RS00125	COG1956	GAF domain-containing protein
PmCQ2_RS00130	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PmCQ2_RS00140	COG1393	Belongs to the ArsC family
PmCQ2_RS00145	COG3036	rescue of stalled ribosome
PmCQ2_RS00285	COG3617	BRO family, N-terminal domain
PmCQ2_RS00305	COG3657	addiction module killer protein
PmCQ2_RS00310	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
PmCQ2_RS00390	COG3179	chitinase
PmCQ2_RS00450	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PmCQ2_RS00545	COG0675	Transposase, IS605 OrfB family
PmCQ2_RS00575	COG3094	Invasion gene expression up-regulator, SirB
PmCQ2_RS00580	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PmCQ2_RS00610	COG2814	Major facilitator Superfamily
PmCQ2_RS00615	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PmCQ2_RS00615	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
PmCQ2_RS00620	COG3715	PTS system
PmCQ2_RS00625	COG3716	PTS system mannose fructose sorbose family IID component
PmCQ2_RS00650	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
PmCQ2_RS00665	COG2268	Band 7 protein
PmCQ2_RS00675	COG2927	DNA polymerase III (CHI subunit)
PmCQ2_RS00705	COG0783	Belongs to the Dps family
PmCQ2_RS00725	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PmCQ2_RS00740	COG0814	amino acid
PmCQ2_RS00745	COG2990	Protein conserved in bacteria
PmCQ2_RS00755	COG0531	amino acid
PmCQ2_RS00765	COG0675	Transposase, IS605 OrfB family
PmCQ2_RS00780	COG0612	Peptidase, M16
PmCQ2_RS00795	COG0539	negative regulation of cytoplasmic translation
PmCQ2_RS00805	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
PmCQ2_RS00810	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
PmCQ2_RS00820	COG0023	Translation Initiation Factor
PmCQ2_RS00825	COG0450	alkyl hydroperoxide reductase
PmCQ2_RS00830	COG0626	cystathionine gamma-synthase activity
PmCQ2_RS00835	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
PmCQ2_RS00835	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
PmCQ2_RS00845	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PmCQ2_RS00850	COG1028	Short-chain dehydrogenase reductase Sdr
PmCQ2_RS00855	COG1063	alcohol dehydrogenase
PmCQ2_RS00860	COG1609	Transcriptional regulator
PmCQ2_RS00865	COG3265	gluconokinase activity
PmCQ2_RS00885	COG0247	lactate metabolic process
PmCQ2_RS00885	COG0277	FAD linked oxidase domain protein
PmCQ2_RS00890	COG2885	chlorophyll binding
PmCQ2_RS00890	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
PmCQ2_RS00895	COG1704	LemA family
PmCQ2_RS00905	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
PmCQ2_RS00935	COG0463	Glycosyl transferase, family 2
PmCQ2_RS00970	COG2363	Small membrane protein
PmCQ2_RS00975	COG1643	Atp-dependent helicase
PmCQ2_RS00995	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
PmCQ2_RS01030	COG0195	Participates in both transcription termination and antitermination
PmCQ2_RS01075	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
PmCQ2_RS01095	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PmCQ2_RS01095	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PmCQ2_RS01100	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PmCQ2_RS01110	COG2005	Transcriptional regulator
PmCQ2_RS01120	COG0725	ABC transporter, periplasmic molybdate-binding protein
PmCQ2_RS01125	COG4149	molybdate abc transporter
PmCQ2_RS01135	COG4771	TonB-dependent receptor
PmCQ2_RS01135	COG1629	transport
PmCQ2_RS01165	COG5339	Protein conserved in bacteria
PmCQ2_RS01170	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PmCQ2_RS01175	COG0778	Nitroreductase
PmCQ2_RS01180	COG0814	amino acid
PmCQ2_RS01195	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
PmCQ2_RS01200	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
PmCQ2_RS01205	COG1280	lysine exporter protein (LysE YggA)
PmCQ2_RS01240	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
PmCQ2_RS01260	COG0633	Ferredoxin
PmCQ2_RS01265	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PmCQ2_RS01275	COG0733	neurotransmitter:sodium symporter activity
PmCQ2_RS01280	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PmCQ2_RS01285	COG2027	D-alanyl-D-alanine carboxypeptidase
PmCQ2_RS01300	COG1534	Rna-binding protein
PmCQ2_RS01310	COG0676	glucose-6-phosphate 1-epimerase activity
PmCQ2_RS01315	COG1199	ATP-dependent helicase activity
PmCQ2_RS01320	COG1214	PFAM Peptidase M22, glycoprotease
PmCQ2_RS01325	COG3065	identical protein binding
PmCQ2_RS01330	COG0318	PFAM AMP-dependent synthetase and ligase
PmCQ2_RS01335	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
PmCQ2_RS01340	COG0857	belongs to the CobB CobQ family
PmCQ2_RS01340	COG0280	phosphate acetyltransferase
PmCQ2_RS01355	COG1286	toxin biosynthetic process
PmCQ2_RS01365	COG0163	prenyltransferase activity
PmCQ2_RS01370	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
PmCQ2_RS01375	COG0303	'Molybdopterin
PmCQ2_RS01390	COG0708	Exodeoxyribonuclease III
PmCQ2_RS01395	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
PmCQ2_RS01405	COG3105	Protein conserved in bacteria
PmCQ2_RS01410	COG1944	ATP diphosphatase activity
PmCQ2_RS01415	COG2226	methyltransferase
PmCQ2_RS01430	COG1940	carbohydrate kinase activity
PmCQ2_RS01430	COG1846	Transcriptional regulator
PmCQ2_RS01455	COG0339	signal peptide processing
PmCQ2_RS01460	COG2832	Protein of unknown function (DUF454)
PmCQ2_RS01465	COG4166	transmembrane transport
PmCQ2_RS01475	COG0671	phosphoesterase, PA-phosphatase related
PmCQ2_RS01490	COG0515	serine threonine protein kinase
PmCQ2_RS01495	COG0778	Nitroreductase
PmCQ2_RS01500	COG0616	signal peptide processing
PmCQ2_RS01510	COG0589	response to stress
PmCQ2_RS01520	COG1528	Iron-storage protein
PmCQ2_RS01525	COG1528	Iron-storage protein
PmCQ2_RS01530	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PmCQ2_RS01535	COG0287	Prephenate dehydrogenase
PmCQ2_RS01535	COG1605	Chorismate mutase
PmCQ2_RS01540	COG4409	exo-alpha-(2->6)-sialidase activity
PmCQ2_RS01545	COG0009	L-threonylcarbamoyladenylate synthase
PmCQ2_RS01555	COG0583	DNA-binding transcription factor activity
PmCQ2_RS01590	COG0469	pyruvate kinase activity
PmCQ2_RS01595	COG0673	inositol 2-dehydrogenase activity
PmCQ2_RS01605	COG0307	riboflavin synthase, alpha
PmCQ2_RS01610	COG2823	Periplasmic or secreted lipoprotein
PmCQ2_RS01615	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
PmCQ2_RS01635	COG4953	penicillin-binding protein 1C
PmCQ2_RS01645	COG1940	carbohydrate kinase activity
PmCQ2_RS01655	COG0586	Pfam SNARE associated Golgi protein
PmCQ2_RS01680	COG0285	dihydrofolate synthase activity
PmCQ2_RS01685	COG0406	alpha-ribazole phosphatase activity
PmCQ2_RS01690	COG0564	pseudouridine synthase activity
PmCQ2_RS01720	COG0791	NLP P60 protein
PmCQ2_RS01740	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
PmCQ2_RS01750	COG1448	Aminotransferase
PmCQ2_RS01755	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
PmCQ2_RS01760	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PmCQ2_RS01765	COG0308	aminopeptidase N
PmCQ2_RS01775	COG0613	PHP domain protein
PmCQ2_RS01795	COG4575	ribosome binding
PmCQ2_RS01800	COG2925	Exonuclease
PmCQ2_RS01805	COG0697	spore germination
PmCQ2_RS01845	COG0291	Belongs to the bacterial ribosomal protein bL35 family
PmCQ2_RS01855	COG0676	glucose-6-phosphate 1-epimerase activity
PmCQ2_RS01860	COG0641	radical SAM
PmCQ2_RS01865	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PmCQ2_RS01870	COG3119	arylsulfatase activity
PmCQ2_RS01880	COG0730	response to heat
PmCQ2_RS01890	COG0747	negative chemotaxis
PmCQ2_RS01910	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
PmCQ2_RS01925	COG0616	signal peptide processing
PmCQ2_RS01930	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PmCQ2_RS01935	COG0512	Glutamine amidotransferase of anthranilate synthase
PmCQ2_RS01955	COG4221	oxidoreductase activity
PmCQ2_RS01970	COG1629	transport
PmCQ2_RS01975	COG0288	reversible hydration of carbon dioxide
PmCQ2_RS01980	COG3118	belongs to the thioredoxin family
PmCQ2_RS01985	COG0492	ferredoxin-NADP+ reductase activity
PmCQ2_RS01990	COG4988	ABC transporter
PmCQ2_RS01995	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
PmCQ2_RS02005	COG1946	Acyl-CoA thioesterase
PmCQ2_RS02010	COG2833	Protein of unknown function (DUF455)
PmCQ2_RS02020	COG0583	DNA-binding transcription factor activity
PmCQ2_RS02025	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
PmCQ2_RS02030	COG0402	S-adenosylhomocysteine deaminase activity
PmCQ2_RS02040	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PmCQ2_RS02045	COG4591	ABC-type transport system involved in lipoprotein release permease component
PmCQ2_RS02055	COG4591	ABC-type transport system involved in lipoprotein release permease component
PmCQ2_RS02060	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PmCQ2_RS02085	COG3133	Outer membrane lipoprotein
PmCQ2_RS02095	COG3102	Protein conserved in bacteria
PmCQ2_RS02115	COG1090	epimerase
PmCQ2_RS02145	COG1523	belongs to the glycosyl hydrolase 13 family
PmCQ2_RS02155	COG1640	4-alpha-glucanotransferase
PmCQ2_RS02185	COG3005	denitrification pathway
PmCQ2_RS02190	COG0243	molybdopterin cofactor binding
PmCQ2_RS02200	COG0142	geranyltranstransferase activity
PmCQ2_RS02220	COG1115	amino acid carrier protein
PmCQ2_RS02230	COG1538	Outer membrane efflux protein
PmCQ2_RS02245	COG0517	IMP dehydrogenase activity
PmCQ2_RS02245	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
PmCQ2_RS02250	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
PmCQ2_RS02255	COG2969	positive regulation of protein catabolic process
PmCQ2_RS02280	COG2999	glutathione oxidoreductase activity
PmCQ2_RS02285	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
PmCQ2_RS02290	COG1074	ATP-dependent DNA helicase activity
PmCQ2_RS02295	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
PmCQ2_RS02300	COG2252	PERMEase
PmCQ2_RS02305	COG2951	lytic endotransglycosylase activity
PmCQ2_RS02310	COG1216	Glycosyl transferase, family 2
PmCQ2_RS02315	COG1216	Glycosyl transferase, family 2
PmCQ2_RS02325	COG3306	glycosyltransferase involved in LPS biosynthesis
PmCQ2_RS02340	COG1434	Gram-negative-bacterium-type cell wall biogenesis
PmCQ2_RS02415	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PmCQ2_RS02420	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PmCQ2_RS02430	COG1067	ATP-dependent peptidase activity
PmCQ2_RS02455	COG3098	single-species biofilm formation
PmCQ2_RS02460	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
PmCQ2_RS02470	COG1611	Belongs to the LOG family
PmCQ2_RS02485	COG2358	TRAP transporter, solute receptor (TAXI family
PmCQ2_RS02490	COG0842	Transport permease protein
PmCQ2_RS02500	COG3101	peptidyl-lysine hydroxylation
PmCQ2_RS02515	COG3593	DNA synthesis involved in DNA repair
PmCQ2_RS02520	COG2431	L-lysine efflux transmembrane transporter activity
PmCQ2_RS02590	COG0024	Methionine aminopeptidase
PmCQ2_RS02605	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
PmCQ2_RS02610	COG2837	iron assimilation
PmCQ2_RS02620	COG0672	)-iron permease
PmCQ2_RS02635	COG1136	(ABC) transporter
PmCQ2_RS02635	COG0577	efflux transmembrane transporter activity
PmCQ2_RS02645	COG4181	ATPase activity
PmCQ2_RS02650	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PmCQ2_RS02680	COG2062	phosphohistidine phosphatase, SixA
PmCQ2_RS02690	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
PmCQ2_RS02695	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PmCQ2_RS02725	COG0745	RESPONSE REGULATOR receiver
PmCQ2_RS02730	COG5002	protein histidine kinase activity
PmCQ2_RS02755	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
PmCQ2_RS02760	COG3683	transport system, periplasmic component
PmCQ2_RS02765	COG0488	(ABC) transporter
PmCQ2_RS02775	COG0583	DNA-binding transcription factor activity
PmCQ2_RS02810	COG0463	Glycosyl transferase, family 2
PmCQ2_RS02825	COG0210	DNA helicase
PmCQ2_RS02840	COG0437	4 iron, 4 sulfur cluster binding
PmCQ2_RS02845	COG2864	formate dehydrogenase
PmCQ2_RS02865	COG2920	part of a sulfur-relay system
PmCQ2_RS02875	COG1121	(ABC) transporter
PmCQ2_RS02880	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PmCQ2_RS02885	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PmCQ2_RS02905	COG3304	Inner membrane component domain
PmCQ2_RS02910	COG1289	transmembrane transporter activity
PmCQ2_RS02965	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PmCQ2_RS02970	COG0733	neurotransmitter:sodium symporter activity
PmCQ2_RS02985	COG1178	ABC-type Fe3 transport system permease component
PmCQ2_RS02990	COG4143	(ABC) transporter
PmCQ2_RS03000	COG4797	methyltransferase
PmCQ2_RS03000	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
PmCQ2_RS03015	COG0019	diaminopimelate decarboxylase activity
PmCQ2_RS03020	COG0187	DNA topoisomerase II activity
PmCQ2_RS03025	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PmCQ2_RS03040	COG0251	oxidation-reduction process
PmCQ2_RS03050	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PmCQ2_RS03060	COG1560	Kdo2-lipid A biosynthetic process
PmCQ2_RS03065	COG0730	response to heat
PmCQ2_RS03070	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
PmCQ2_RS03080	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
PmCQ2_RS03080	COG3264	Mechanosensitive ion channel
PmCQ2_RS03085	COG0318	PFAM AMP-dependent synthetase and ligase
PmCQ2_RS03090	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
PmCQ2_RS03095	COG0596	Alpha beta hydrolase
PmCQ2_RS03105	COG0716	FMN binding
PmCQ2_RS03110	COG0735	belongs to the Fur family
PmCQ2_RS03120	COG0697	spore germination
PmCQ2_RS03125	COG0697	spore germination
PmCQ2_RS03140	COG0142	geranyltranstransferase activity
PmCQ2_RS03145	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
PmCQ2_RS03160	COG1530	ribonuclease E activity
PmCQ2_RS03165	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
PmCQ2_RS03175	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PmCQ2_RS03190	COG1823	symporter activity
PmCQ2_RS03205	COG0497	DNA recombination
PmCQ2_RS03225	COG1607	acyl-coa hydrolase
PmCQ2_RS03230	COG2350	Protein conserved in bacteria
PmCQ2_RS03235	COG0741	lytic transglycosylase activity
PmCQ2_RS03250	COG0633	Ferredoxin
PmCQ2_RS03265	COG0316	Belongs to the HesB IscA family
PmCQ2_RS03270	COG0822	iron-sulfur transferase activity
PmCQ2_RS03280	COG1959	2 iron, 2 sulfur cluster binding
PmCQ2_RS03285	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
PmCQ2_RS03300	COG5002	protein histidine kinase activity
PmCQ2_RS03300	COG2198	Histidine kinase
PmCQ2_RS03300	COG0784	Response regulator, receiver
PmCQ2_RS03310	COG1518	maintenance of DNA repeat elements
PmCQ2_RS03345	COG0489	protein tyrosine kinase activity
PmCQ2_RS03355	COG4771	TonB-dependent receptor
PmCQ2_RS03355	COG1629	transport
PmCQ2_RS03360	COG0748	coenzyme F420 binding
PmCQ2_RS03420	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PmCQ2_RS03440	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
PmCQ2_RS03450	COG1022	Amp-dependent synthetase and ligase
PmCQ2_RS03455	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
PmCQ2_RS03460	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
PmCQ2_RS03465	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
PmCQ2_RS03475	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
PmCQ2_RS03495	COG3069	C4-dicarboxylate transmembrane transporter activity
PmCQ2_RS03505	COG2860	membrane
PmCQ2_RS03515	COG0527	aspartate kinase activity
PmCQ2_RS03525	COG1858	cytochrome C peroxidase
PmCQ2_RS03530	COG1328	CTP reductase activity
PmCQ2_RS03530	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PmCQ2_RS03545	COG0084	hydrolase, TatD family'
PmCQ2_RS03550	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PmCQ2_RS03555	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PmCQ2_RS03570	COG0800	Aldolase
PmCQ2_RS03575	COG0659	secondary active sulfate transmembrane transporter activity
PmCQ2_RS03585	COG0582	viral genome integration into host DNA
PmCQ2_RS03680	COG1840	ABC-type Fe3 transport system, periplasmic component
PmCQ2_RS03690	COG1840	ABC-type Fe3 transport system, periplasmic component
PmCQ2_RS03710	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
PmCQ2_RS03715	COG0456	acetyltransferase
PmCQ2_RS03720	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
PmCQ2_RS03735	COG4795	General secretion pathway protein
PmCQ2_RS03740	COG2165	general secretion pathway protein
PmCQ2_RS03765	COG3064	Membrane
PmCQ2_RS03770	COG0848	biopolymer transport protein
PmCQ2_RS03775	COG0811	peptide transport
PmCQ2_RS03780	COG0824	Thioesterase
PmCQ2_RS03795	COG1294	oxidase, subunit
PmCQ2_RS03800	COG1271	oxidase subunit
PmCQ2_RS03835	COG0494	nUDIX hydrolase
PmCQ2_RS03850	COG1755	Isoprenylcysteine carboxyl methyltransferase
PmCQ2_RS03865	COG0346	lactoylglutathione lyase activity
PmCQ2_RS03875	COG2056	Na+-H+ antiporter family
PmCQ2_RS03890	COG1530	ribonuclease E activity
PmCQ2_RS03910	COG0626	cystathionine gamma-synthase activity
PmCQ2_RS03935	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PmCQ2_RS03960	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PmCQ2_RS03965	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
PmCQ2_RS04005	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
PmCQ2_RS04020	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
PmCQ2_RS04030	COG1596	polysaccharide export
PmCQ2_RS04035	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PmCQ2_RS04045	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
PmCQ2_RS04050	COG0494	nUDIX hydrolase
PmCQ2_RS04055	COG1876	peptidase activity
PmCQ2_RS04065	COG1393	Belongs to the ArsC family
PmCQ2_RS04075	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
PmCQ2_RS04100	COG1088	dTDP-glucose 4,6-dehydratase activity
PmCQ2_RS04120	COG2017	converts alpha-aldose to the beta-anomer
PmCQ2_RS04130	COG1085	galactose-1-phosphate uridylyltransferase
PmCQ2_RS04135	COG1609	Transcriptional regulator
PmCQ2_RS04140	COG1879	ABC-type sugar transport system periplasmic component
PmCQ2_RS04150	COG4211	Belongs to the binding-protein-dependent transport system permease family
PmCQ2_RS04155	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PmCQ2_RS04160	COG2194	sulfuric ester hydrolase activity
PmCQ2_RS04170	COG1444	tRNA N-acetyltransferase activity
PmCQ2_RS04185	COG1702	phosphate starvation-inducible protein PhoH
PmCQ2_RS04190	COG0561	phosphatase activity
PmCQ2_RS04200	COG0697	spore germination
PmCQ2_RS04215	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
PmCQ2_RS04230	COG1238	metal cluster binding
PmCQ2_RS04240	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PmCQ2_RS04265	COG0210	DNA helicase
PmCQ2_RS04270	COG5645	(Lipo)protein
PmCQ2_RS04285	COG3722	fumarate hydratase activity
PmCQ2_RS04290	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
PmCQ2_RS04295	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PmCQ2_RS04295	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PmCQ2_RS04305	COG0861	Integral membrane protein TerC family
PmCQ2_RS04315	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
PmCQ2_RS04325	COG3691	Protein conserved in bacteria
PmCQ2_RS04345	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PmCQ2_RS04360	COG4558	Periplasmic binding protein
PmCQ2_RS04365	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PmCQ2_RS04385	COG0675	Transposase, IS605 OrfB family
PmCQ2_RS04400	COG4785	May be involved in cell division
PmCQ2_RS04405	COG0513	Belongs to the DEAD box helicase family
PmCQ2_RS04415	COG3842	ATPase activity
PmCQ2_RS04420	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
PmCQ2_RS04445	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
PmCQ2_RS04450	COG1027	Aspartate ammonia-lyase
PmCQ2_RS04470	COG4545	Glutaredoxin-related protein
PmCQ2_RS04500	COG0511	ligase activity, forming carbon-carbon bonds
PmCQ2_RS04505	COG0439	Biotin carboxylase
PmCQ2_RS04510	COG3924	membrane
PmCQ2_RS04515	COG4145	pantothenate transmembrane transporter activity
PmCQ2_RS04560	COG0675	Transposase, IS605 OrfB family
PmCQ2_RS04595	COG1450	Type ii and iii secretion system protein
PmCQ2_RS04630	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PmCQ2_RS04660	COG0658	competence protein
PmCQ2_RS04660	COG2333	competence protein COMEC
PmCQ2_RS04670	COG0617	tRNA 3'-terminal CCA addition
PmCQ2_RS04675	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
PmCQ2_RS04685	COG2949	membrane
PmCQ2_RS04695	COG0440	acetolactate synthase activity
PmCQ2_RS04700	COG0028	Belongs to the TPP enzyme family
PmCQ2_RS04710	COG2916	Histone family protein nucleoid-structuring protein H-NS
PmCQ2_RS04715	COG0788	formyltetrahydrofolate deformylase activity
PmCQ2_RS04720	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
PmCQ2_RS04730	COG2190	(PTS) system
PmCQ2_RS04730	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PmCQ2_RS04730	COG1263	PTS System
PmCQ2_RS04735	COG0488	(ABC) transporter
PmCQ2_RS04745	COG1346	cytolysis
PmCQ2_RS04755	COG1525	nuclease
PmCQ2_RS04765	COG2166	iron-sulfur cluster assembly
PmCQ2_RS04780	COG3381	protein complex oligomerization
PmCQ2_RS04785	COG2249	NAD(P)H dehydrogenase (quinone) activity
PmCQ2_RS04795	COG0330	HflC and HflK could
PmCQ2_RS04800	COG1119	ATPase activity
PmCQ2_RS04810	COG2932	Transcriptional regulator
PmCQ2_RS04815	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PmCQ2_RS04820	COG0508	dehydrogenase complex catalyzes the overall conversion of
PmCQ2_RS04825	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
PmCQ2_RS04830	COG2190	(PTS) system
PmCQ2_RS04835	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PmCQ2_RS04840	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
PmCQ2_RS04865	COG0802	atpase or kinase
PmCQ2_RS04870	COG1388	LysM domain
PmCQ2_RS04870	COG0860	N-Acetylmuramoyl-L-alanine amidase
PmCQ2_RS04890	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PmCQ2_RS04895	COG3283	Transcriptional regulator of aromatic amino acids metabolism
PmCQ2_RS04905	COG3106	COG3106 Predicted ATPase
PmCQ2_RS04910	COG4166	transmembrane transport
PmCQ2_RS04915	COG4168	peptide transport system, permease
PmCQ2_RS04920	COG4171	peptide transport system, permease
PmCQ2_RS04925	COG4172	Belongs to the ABC transporter superfamily
PmCQ2_RS04930	COG4172	Belongs to the ABC transporter superfamily
PmCQ2_RS04965	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
PmCQ2_RS04965	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
PmCQ2_RS05015	COG2252	PERMEase
PmCQ2_RS05025	COG2814	Major facilitator Superfamily
PmCQ2_RS05035	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
PmCQ2_RS05050	COG0508	dehydrogenase complex catalyzes the overall conversion of
PmCQ2_RS05055	COG0567	Dehydrogenase, E1 component
PmCQ2_RS05080	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PmCQ2_RS05085	COG3108	Peptidase M15
PmCQ2_RS05090	COG2989	Protein conserved in bacteria
PmCQ2_RS05095	COG0793	Belongs to the peptidase S41A family
PmCQ2_RS05105	COG2995	paraquat-inducible protein a
PmCQ2_RS05110	COG3008	intermembrane lipid transfer
PmCQ2_RS05125	COG1176	ABC-type spermidine putrescine transport system, permease component I
PmCQ2_RS05130	COG1177	transmembrane transport
PmCQ2_RS05135	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
PmCQ2_RS05140	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
PmCQ2_RS05155	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
PmCQ2_RS05170	COG1522	sequence-specific DNA binding
PmCQ2_RS05180	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
PmCQ2_RS05185	COG3025	triphosphatase activity
PmCQ2_RS05190	COG1392	Phosphate transport regulator
PmCQ2_RS05195	COG0306	phosphate transporter
PmCQ2_RS05200	COG4991	sh3 domain protein
PmCQ2_RS05225	COG0739	heme binding
PmCQ2_RS05235	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PmCQ2_RS05240	COG4608	Belongs to the ABC transporter superfamily
PmCQ2_RS05250	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PmCQ2_RS05255	COG0601	transmembrane transport
PmCQ2_RS05260	COG0747	negative chemotaxis
PmCQ2_RS05265	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
PmCQ2_RS05275	COG0826	peptidase U32
PmCQ2_RS05295	COG0561	phosphatase activity
PmCQ2_RS05300	COG3069	C4-dicarboxylate transmembrane transporter activity
PmCQ2_RS05310	COG1862	Preprotein translocase
PmCQ2_RS05315	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
PmCQ2_RS05320	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
PmCQ2_RS05355	COG0257	Belongs to the bacterial ribosomal protein bL36 family
PmCQ2_RS05360	COG0745	RESPONSE REGULATOR receiver
PmCQ2_RS05375	COG3585	molybdate ion transport
PmCQ2_RS05380	COG0642	Histidine kinase
PmCQ2_RS05385	COG0745	RESPONSE REGULATOR receiver
PmCQ2_RS05390	COG2259	Doxx family
PmCQ2_RS05405	COG3219	Protein conserved in bacteria
PmCQ2_RS05415	COG1595	DNA-templated transcription, initiation
PmCQ2_RS05450	COG1840	ABC-type Fe3 transport system, periplasmic component
PmCQ2_RS05460	COG1053	succinate dehydrogenase
PmCQ2_RS05465	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
PmCQ2_RS05480	COG0795	lipopolysaccharide-transporting ATPase activity
PmCQ2_RS05485	COG0795	lipopolysaccharide-transporting ATPase activity
PmCQ2_RS05500	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
PmCQ2_RS05505	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
PmCQ2_RS05530	COG1083	cytidylyl-transferase
PmCQ2_RS05540	COG0720	synthase
PmCQ2_RS05545	COG0602	queuosine metabolic process
PmCQ2_RS05555	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
PmCQ2_RS05570	COG5007	Belongs to the BolA IbaG family
PmCQ2_RS05575	COG3113	response to antibiotic
PmCQ2_RS05580	COG2854	intermembrane phospholipid transfer
PmCQ2_RS05585	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
PmCQ2_RS05590	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
PmCQ2_RS05595	COG1127	ABC transporter
PmCQ2_RS05600	COG3117	lipopolysaccharide transmembrane transporter activity
PmCQ2_RS05605	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
PmCQ2_RS05610	COG1137	ATPase activity
PmCQ2_RS05615	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
PmCQ2_RS05630	COG2850	peptidyl-arginine hydroxylation
PmCQ2_RS05640	COG2867	negative regulation of translational initiation
PmCQ2_RS05655	COG0531	amino acid
PmCQ2_RS05665	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PmCQ2_RS05670	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
PmCQ2_RS05675	COG2824	Alkylphosphonate utilization operon protein PhnA
PmCQ2_RS05695	COG1172	Belongs to the binding-protein-dependent transport system permease family
PmCQ2_RS05700	COG1879	ABC-type sugar transport system periplasmic component
PmCQ2_RS05705	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PmCQ2_RS05715	COG1605	Chorismate mutase
PmCQ2_RS05715	COG0077	Prephenate dehydratase
PmCQ2_RS05720	COG1979	alcohol dehydrogenase
PmCQ2_RS05730	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PmCQ2_RS05735	COG0849	cell division
PmCQ2_RS05740	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
PmCQ2_RS05775	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
PmCQ2_RS05785	COG0768	penicillin binding
PmCQ2_RS05790	COG3116	cell division
PmCQ2_RS05805	COG1966	Carbon starvation protein
PmCQ2_RS05810	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
PmCQ2_RS05815	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PmCQ2_RS05820	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PmCQ2_RS05825	COG1120	ATPase activity
PmCQ2_RS05835	COG4160	amino acid transport
PmCQ2_RS05840	COG4215	(ABC) transporter
PmCQ2_RS05845	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PmCQ2_RS05850	COG1126	abc transporter atp-binding protein
PmCQ2_RS05860	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
PmCQ2_RS05865	COG0312	modulator of DNA gyrase
PmCQ2_RS05875	COG0330	HflC and HflK could
PmCQ2_RS05880	COG0330	HflC and HflK could
PmCQ2_RS05890	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
PmCQ2_RS05900	COG0527	aspartate kinase activity
PmCQ2_RS05900	COG0460	homoserine dehydrogenase
PmCQ2_RS05985	COG0204	Acyl-transferase
PmCQ2_RS05995	COG5413	integral membrane protein
PmCQ2_RS06005	COG1509	lysine 2,3-aminomutase activity
PmCQ2_RS06010	COG3061	Opacity-associated protein A
PmCQ2_RS06010	COG3266	domain, Protein
PmCQ2_RS06030	COG2814	Major facilitator Superfamily
PmCQ2_RS06040	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
PmCQ2_RS06070	COG1459	type II secretion system
PmCQ2_RS06075	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
PmCQ2_RS06080	COG4969	Belongs to the N-Me-Phe pilin family
PmCQ2_RS06085	COG3023	N-Acetylmuramoyl-L-alanine amidase
PmCQ2_RS06095	COG0730	response to heat
PmCQ2_RS06110	COG0590	tRNA wobble adenosine to inosine editing
PmCQ2_RS06115	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PmCQ2_RS06125	COG1882	Formate acetyltransferase
PmCQ2_RS06130	COG2116	formate transmembrane transporter activity
PmCQ2_RS06135	COG0537	adenosine 5'-monophosphoramidase activity
PmCQ2_RS06160	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
PmCQ2_RS06190	COG0681	Belongs to the peptidase S26 family
PmCQ2_RS06230	COG2267	carboxylic ester hydrolase activity
PmCQ2_RS06245	COG0436	Aminotransferase
PmCQ2_RS06260	COG3842	ATPase activity
PmCQ2_RS06285	COG2095	MarC family integral membrane protein
PmCQ2_RS06290	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
PmCQ2_RS06295	COG0748	coenzyme F420 binding
PmCQ2_RS06300	COG4178	(ABC) transporter
PmCQ2_RS06315	COG0121	glutamine amidotransferase
PmCQ2_RS06320	COG0814	amino acid
PmCQ2_RS06325	COG1760	l-serine dehydratase
PmCQ2_RS06330	COG3738	Protein conserved in bacteria
PmCQ2_RS06340	COG0753	catalase activity
PmCQ2_RS06350	COG3088	subunit of a heme lyase
PmCQ2_RS06350	COG4235	cytochrome complex assembly
PmCQ2_RS06355	COG4235	cytochrome complex assembly
PmCQ2_RS06355	COG3088	subunit of a heme lyase
PmCQ2_RS06365	COG1138	Cytochrome C-type biogenesis protein
PmCQ2_RS06370	COG3301	Polysulphide reductase, NrfD
PmCQ2_RS06375	COG0437	4 iron, 4 sulfur cluster binding
PmCQ2_RS06380	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
PmCQ2_RS06400	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
PmCQ2_RS06415	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PmCQ2_RS06430	COG0346	lactoylglutathione lyase activity
PmCQ2_RS06450	COG1138	Cytochrome C-type biogenesis protein
PmCQ2_RS06460	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PmCQ2_RS06465	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PmCQ2_RS06470	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PmCQ2_RS06480	COG0475	glutathione-regulated potassium exporter activity
PmCQ2_RS06480	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
PmCQ2_RS06485	COG0431	NADPH-dependent FMN reductase
PmCQ2_RS06495	COG0366	Alpha amylase catalytic
PmCQ2_RS06505	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PmCQ2_RS06505	COG1263	PTS System
PmCQ2_RS06515	COG2814	Major facilitator Superfamily
PmCQ2_RS06525	COG0280	phosphate acetyltransferase
PmCQ2_RS06525	COG0281	malic enzyme
PmCQ2_RS06535	COG0737	Belongs to the 5'-nucleotidase family
PmCQ2_RS06545	COG2976	Protein conserved in bacteria
PmCQ2_RS06560	COG1426	Protein conserved in bacteria
PmCQ2_RS06565	COG3063	Type IV pilus biogenesis stability protein PilW
PmCQ2_RS06575	COG0628	permease
PmCQ2_RS06585	COG0521	Mo-molybdopterin cofactor biosynthetic process
PmCQ2_RS06590	COG4589	Belongs to the CDS family
PmCQ2_RS06600	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PmCQ2_RS06605	COG0490	domain, Protein
PmCQ2_RS06605	COG0471	metal ion transport
PmCQ2_RS06650	COG0575	Belongs to the CDS family
PmCQ2_RS06690	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PmCQ2_RS06695	COG0842	Transport permease protein
PmCQ2_RS06695	COG1129	ABC transporter
PmCQ2_RS06700	COG0842	Transport permease protein
PmCQ2_RS06705	COG1538	Outer membrane efflux protein
PmCQ2_RS06710	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PmCQ2_RS06715	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
PmCQ2_RS06735	COG1652	LysM domain
PmCQ2_RS06740	COG2321	neutral zinc metallopeptidase
PmCQ2_RS06745	COG3730	PTS system glucitol sorbitol-specific
PmCQ2_RS06760	COG1028	Short-chain dehydrogenase reductase Sdr
PmCQ2_RS06765	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
PmCQ2_RS06770	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PmCQ2_RS06775	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PmCQ2_RS06780	COG1349	DNA-binding transcription factor activity
PmCQ2_RS06810	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
PmCQ2_RS06815	COG1792	Involved in formation and maintenance of cell shape
PmCQ2_RS06825	COG0557	exoribonuclease II activity
PmCQ2_RS06870	COG0582	viral genome integration into host DNA
PmCQ2_RS06965	COG3617	BRO family, N-terminal domain
PmCQ2_RS07070	COG3179	chitinase
PmCQ2_RS07210	COG0675	Transposase, IS605 OrfB family
PmCQ2_RS07245	COG1686	Belongs to the peptidase S11 family
PmCQ2_RS07255	COG0772	Belongs to the SEDS family
PmCQ2_RS07260	COG0768	penicillin binding
PmCQ2_RS07270	COG0799	negative regulation of ribosome biogenesis
PmCQ2_RS07280	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
PmCQ2_RS07290	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
PmCQ2_RS07300	COG1028	Short-chain dehydrogenase reductase Sdr
PmCQ2_RS07305	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
PmCQ2_RS07325	COG1399	metal-binding, possibly nucleic acid-binding protein
PmCQ2_RS07335	COG0601	transmembrane transport
PmCQ2_RS07340	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PmCQ2_RS07350	COG4608	Belongs to the ABC transporter superfamily
PmCQ2_RS07365	COG0500	methyltransferase
PmCQ2_RS07370	COG2830	Protein of unknown function (DUF452)
PmCQ2_RS07380	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
PmCQ2_RS07390	COG0545	Peptidyl-prolyl cis-trans isomerase
PmCQ2_RS07405	COG2966	Psort location CytoplasmicMembrane, score
PmCQ2_RS07410	COG3610	response to peptide
PmCQ2_RS07415	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PmCQ2_RS07420	COG2217	Heavy metal translocating P-type atpase
PmCQ2_RS07425	COG2608	mercury ion transmembrane transporter activity
PmCQ2_RS07435	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
PmCQ2_RS07440	COG2205	protein histidine kinase activity
PmCQ2_RS07445	COG0745	RESPONSE REGULATOR receiver
PmCQ2_RS07450	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PmCQ2_RS07465	COG3083	sulfuric ester hydrolase activity
PmCQ2_RS07470	COG0402	S-adenosylhomocysteine deaminase activity
PmCQ2_RS07475	COG1011	Hydrolase
PmCQ2_RS07505	COG1561	YicC-like family, N-terminal region
PmCQ2_RS07510	COG0354	folic acid binding
PmCQ2_RS07540	COG1385	rRNA (uridine-N3-)-methyltransferase activity
PmCQ2_RS07555	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PmCQ2_RS07560	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
PmCQ2_RS07565	COG3307	-O-antigen
PmCQ2_RS07570	COG0191	fructose-bisphosphate aldolase activity
PmCQ2_RS07580	COG3719	Belongs to the RNase T2 family
PmCQ2_RS07585	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
PmCQ2_RS07590	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PmCQ2_RS07595	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PmCQ2_RS07600	COG1556	Lactate utilization protein
PmCQ2_RS07605	COG1139	Iron-sulfur cluster binding protein
PmCQ2_RS07610	COG0247	lactate metabolic process
PmCQ2_RS07615	COG1620	l-lactate permease
PmCQ2_RS07620	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
PmCQ2_RS07630	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PmCQ2_RS07635	COG1621	beta-fructofuranosidase activity
PmCQ2_RS07655	COG0859	PFAM glycosyl transferase family 9
PmCQ2_RS07660	COG0859	PFAM glycosyl transferase family 9
PmCQ2_RS07665	COG0513	Belongs to the DEAD box helicase family
PmCQ2_RS07675	COG3201	nicotinamide mononucleotide transporter
PmCQ2_RS07700	COG0635	Involved in the biosynthesis of porphyrin-containing compound
PmCQ2_RS07705	COG0778	Nitroreductase
PmCQ2_RS07750	COG1262	PFAM Formylglycine-generating sulfatase enzyme
PmCQ2_RS07760	COG0577	efflux transmembrane transporter activity
PmCQ2_RS07760	COG1136	(ABC) transporter
PmCQ2_RS07800	COG3071	HemY protein
PmCQ2_RS07805	COG2959	enzyme of heme biosynthesis
PmCQ2_RS07825	COG2197	response regulator
PmCQ2_RS07835	COG2911	Protein conserved in bacteria
PmCQ2_RS07840	COG0248	Ppx GppA phosphatase
PmCQ2_RS07865	COG3085	chromosome segregation
PmCQ2_RS07870	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
PmCQ2_RS07875	COG3084	Protein conserved in bacteria
PmCQ2_RS07890	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
PmCQ2_RS07890	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
PmCQ2_RS07895	COG1105	Belongs to the carbohydrate kinase PfkB family
PmCQ2_RS07900	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
PmCQ2_RS07900	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
PmCQ2_RS07900	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
PmCQ2_RS07915	COG3005	denitrification pathway
PmCQ2_RS07925	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
PmCQ2_RS07935	COG1595	DNA-templated transcription, initiation
PmCQ2_RS07940	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
PmCQ2_RS07945	COG3026	antisigma factor binding
PmCQ2_RS07950	COG3086	response to oxidative stress
PmCQ2_RS07955	COG1763	Mo-molybdopterin cofactor biosynthetic process
PmCQ2_RS07960	COG2814	Major facilitator Superfamily
PmCQ2_RS07985	COG1957	nucleoside hydrolase
PmCQ2_RS07990	COG3276	selenocysteine insertion sequence binding
PmCQ2_RS07995	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
PmCQ2_RS07995	COG2221	Nitrite and sulphite reductase 4Fe-4S
PmCQ2_RS08000	COG3381	protein complex oligomerization
PmCQ2_RS08005	COG3302	dmso reductase anchor subunit
PmCQ2_RS08010	COG0437	4 iron, 4 sulfur cluster binding
PmCQ2_RS08015	COG0243	molybdopterin cofactor binding
PmCQ2_RS08020	COG1285	pathogenesis
PmCQ2_RS08025	COG2190	(PTS) system
PmCQ2_RS08025	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PmCQ2_RS08025	COG1263	PTS System
PmCQ2_RS08080	COG2610	gluconate transmembrane transporter activity
PmCQ2_RS08085	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PmCQ2_RS08090	COG1073	alpha beta
PmCQ2_RS08100	COG3622	Belongs to the hyi family
PmCQ2_RS08105	COG0235	Class ii aldolase
PmCQ2_RS08110	COG3395	kinase activity
PmCQ2_RS08115	COG2084	Dehydrogenase
PmCQ2_RS08120	COG1349	DNA-binding transcription factor activity
PmCQ2_RS08125	COG2195	Cleaves the N-terminal amino acid of tripeptides
PmCQ2_RS08135	COG1312	Catalyzes the dehydration of D-mannonate
PmCQ2_RS08140	COG2186	Transcriptional regulator
PmCQ2_RS08145	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PmCQ2_RS08150	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
PmCQ2_RS08160	COG1028	Short-chain dehydrogenase reductase Sdr
PmCQ2_RS08170	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PmCQ2_RS08175	COG0800	Aldolase
PmCQ2_RS08185	COG1070	Carbohydrate kinase
PmCQ2_RS08190	COG2115	Belongs to the xylose isomerase family
PmCQ2_RS08200	COG1757	Na H antiporter
PmCQ2_RS08205	COG4213	ABC transporter substrate-binding protein
PmCQ2_RS08210	COG1129	ABC transporter
PmCQ2_RS08215	COG4214	carbohydrate transport
PmCQ2_RS08220	COG1609	Transcriptional regulator
PmCQ2_RS08220	COG2207	Transcriptional regulator
PmCQ2_RS08240	COG1940	carbohydrate kinase activity
PmCQ2_RS08255	COG1172	Belongs to the binding-protein-dependent transport system permease family
PmCQ2_RS08265	COG1741	Belongs to the pirin family
PmCQ2_RS08275	COG1017	nitric oxide dioxygenase activity
PmCQ2_RS08275	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
PmCQ2_RS08295	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PmCQ2_RS08300	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
PmCQ2_RS08310	COG2960	long-chain fatty acid transporting porin activity
PmCQ2_RS08315	COG3172	ATPase kinase involved in NAD metabolism
PmCQ2_RS08320	COG2129	metallophosphoesterase
PmCQ2_RS08355	COG0201	protein transport
PmCQ2_RS08430	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PmCQ2_RS08435	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PmCQ2_RS08460	COG0051	transcription antitermination factor activity, RNA binding
PmCQ2_RS08465	COG0038	chloride channel
PmCQ2_RS08475	COG0814	amino acid
PmCQ2_RS08495	COG5016	pyruvate
PmCQ2_RS08495	COG0511	ligase activity, forming carbon-carbon bonds
PmCQ2_RS08505	COG0019	diaminopimelate decarboxylase activity
PmCQ2_RS08520	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
PmCQ2_RS08535	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PmCQ2_RS08540	COG1045	serine acetyltransferase
PmCQ2_RS08555	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PmCQ2_RS08560	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
PmCQ2_RS08565	COG0433	COG0433 Predicted ATPase
PmCQ2_RS08580	COG0705	Rhomboid family
PmCQ2_RS08590	COG0247	lactate metabolic process
PmCQ2_RS08600	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
PmCQ2_RS08605	COG2271	Major facilitator Superfamily
PmCQ2_RS08610	COG0584	glycerophosphoryl diester phosphodiesterase
PmCQ2_RS08630	COG2183	response to ionizing radiation
PmCQ2_RS08650	COG1584	GPR1 FUN34 yaaH family protein
PmCQ2_RS08655	COG1454	alcohol dehydrogenase
PmCQ2_RS08655	COG1012	belongs to the aldehyde dehydrogenase family
PmCQ2_RS08665	COG3842	ATPase activity
PmCQ2_RS08670	COG1178	ABC-type Fe3 transport system permease component
PmCQ2_RS08675	COG3842	ATPase activity
PmCQ2_RS08705	COG0512	Glutamine amidotransferase of anthranilate synthase
PmCQ2_RS08715	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
PmCQ2_RS08740	COG1881	PFAM PEBP family protein
PmCQ2_RS08745	COG1733	regulation of RNA biosynthetic process
PmCQ2_RS08755	COG1132	(ABC) transporter
PmCQ2_RS08760	COG4988	ABC transporter
PmCQ2_RS08765	COG0697	spore germination
PmCQ2_RS08770	COG0187	DNA topoisomerase II activity
PmCQ2_RS08790	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PmCQ2_RS08795	COG0640	Transcriptional regulator
PmCQ2_RS08800	COG1494	fructose-1,6-bisphosphatase
PmCQ2_RS08875	COG1739	Uncharacterized protein family UPF0029
PmCQ2_RS08880	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
PmCQ2_RS08925	COG2853	Lipoprotein
PmCQ2_RS08960	COG4942	peptidase
PmCQ2_RS08965	COG2861	carbohydrate metabolic process
PmCQ2_RS08980	COG0606	chelatase, subunit chli
PmCQ2_RS08990	COG2990	Protein conserved in bacteria
PmCQ2_RS08995	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
PmCQ2_RS09010	COG0742	ribosomal rna small subunit methyltransferase
PmCQ2_RS09030	COG0552	protein localization to endoplasmic reticulum
PmCQ2_RS09035	COG2884	Cell division ATP-binding protein ftsE
PmCQ2_RS09040	COG2177	Part of the ABC transporter FtsEX involved in
PmCQ2_RS09085	COG1012	belongs to the aldehyde dehydrogenase family
PmCQ2_RS09090	COG3384	dioxygenase
PmCQ2_RS09100	COG2814	Major facilitator Superfamily
PmCQ2_RS09105	COG3971	2-oxopent-4-enoate hydratase activity
PmCQ2_RS09130	COG0494	nUDIX hydrolase
PmCQ2_RS09135	COG1011	Hydrolase
PmCQ2_RS09140	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
PmCQ2_RS09150	COG1218	3'(2'),5'-bisphosphate nucleotidase
PmCQ2_RS09155	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
PmCQ2_RS09160	COG0363	glucosamine-6-phosphate deaminase activity
PmCQ2_RS09165	COG0625	glutathione transferase activity
PmCQ2_RS09190	COG1040	competence protein
PmCQ2_RS09200	COG3070	regulator of competence-specific genes
PmCQ2_RS09240	COG1215	transferase activity, transferring glycosyl groups
PmCQ2_RS09245	COG0569	domain protein
PmCQ2_RS09255	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
PmCQ2_RS09275	COG2841	Protein conserved in bacteria
PmCQ2_RS09280	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PmCQ2_RS09295	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
PmCQ2_RS09300	COG1522	sequence-specific DNA binding
PmCQ2_RS09335	COG2358	TRAP transporter, solute receptor (TAXI family
PmCQ2_RS09350	COG2095	MarC family integral membrane protein
PmCQ2_RS09355	COG0488	(ABC) transporter
PmCQ2_RS09365	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PmCQ2_RS09370	COG0471	metal ion transport
PmCQ2_RS09375	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PmCQ2_RS09380	COG1275	C4-dicarboxylate transporter malic acid transport protein
PmCQ2_RS09400	COG3850	Histidine kinase
PmCQ2_RS09405	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
PmCQ2_RS09410	COG3062	negative regulation of establishment of protein localization
PmCQ2_RS09420	COG0437	4 iron, 4 sulfur cluster binding
PmCQ2_RS09425	COG0348	domain, Protein
PmCQ2_RS09430	COG3043	anaerobic respiration
PmCQ2_RS09435	COG3005	denitrification pathway
PmCQ2_RS09440	COG0758	DNA mediated transformation
PmCQ2_RS09450	COG2818	Glycosylase
PmCQ2_RS09475	COG0538	isocitrate dehydrogenase activity
PmCQ2_RS09510	COG1238	metal cluster binding
PmCQ2_RS09515	COG4942	peptidase
PmCQ2_RS09515	COG1388	LysM domain
PmCQ2_RS09540	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
PmCQ2_RS09575	COG1794	racemase activity, acting on amino acids and derivatives
PmCQ2_RS09580	COG3978	acetolactate synthase activity
PmCQ2_RS09590	COG0561	phosphatase activity
PmCQ2_RS09600	COG2267	carboxylic ester hydrolase activity
PmCQ2_RS09605	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PmCQ2_RS09615	COG0561	phosphatase activity
PmCQ2_RS09620	COG0235	Class ii aldolase
PmCQ2_RS09625	COG3623	hexulose-6-phosphate isomerase
PmCQ2_RS09630	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
PmCQ2_RS09660	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PmCQ2_RS09665	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
PmCQ2_RS09670	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
PmCQ2_RS09675	COG2731	YhcH YjgK YiaL family protein
PmCQ2_RS09685	COG1414	Transcriptional regulator
PmCQ2_RS09695	COG0477	Major facilitator Superfamily
PmCQ2_RS09705	COG0351	phosphomethylpyrimidine kinase
PmCQ2_RS09715	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PmCQ2_RS09720	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
PmCQ2_RS09725	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PmCQ2_RS09730	COG1116	anion transmembrane transporter activity
PmCQ2_RS09745	COG0551	DNA topoisomerase type I activity
PmCQ2_RS09760	COG1070	Carbohydrate kinase
PmCQ2_RS09765	COG2390	Transcriptional regulator
PmCQ2_RS09770	COG1129	ABC transporter
PmCQ2_RS09815	COG0583	DNA-binding transcription factor activity
PmCQ2_RS09825	COG3956	TIGRFAM MazG family protein
PmCQ2_RS09845	COG1210	Utp--glucose-1-phosphate uridylyltransferase
PmCQ2_RS09860	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
PmCQ2_RS09865	COG2364	Membrane
PmCQ2_RS09870	COG0859	PFAM glycosyl transferase family 9
PmCQ2_RS09895	COG3069	C4-dicarboxylate transmembrane transporter activity
PmCQ2_RS09900	COG1473	amidohydrolase
PmCQ2_RS09910	COG4772	TonB-dependent receptor
PmCQ2_RS09920	COG1132	(ABC) transporter
PmCQ2_RS09925	COG0859	PFAM glycosyl transferase family 9
PmCQ2_RS09940	COG1519	Transferase
PmCQ2_RS09945	COG0463	Glycosyl transferase, family 2
PmCQ2_RS09950	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
PmCQ2_RS09955	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PmCQ2_RS09960	COG1120	ATPase activity
PmCQ2_RS09965	COG0500	methyltransferase
PmCQ2_RS09975	COG0456	acetyltransferase
PmCQ2_RS09985	COG0762	integral membrane protein
PmCQ2_RS09995	COG3171	Protein conserved in bacteria
PmCQ2_RS10005	COG3038	cytochrome b561
PmCQ2_RS10010	COG1194	a g-specific adenine glycosylase
PmCQ2_RS10040	COG3056	Lipoprotein
PmCQ2_RS10045	COG0271	Belongs to the BolA IbaG family
PmCQ2_RS10050	COG1879	ABC-type sugar transport system periplasmic component
PmCQ2_RS10055	COG1129	ABC transporter
PmCQ2_RS10060	COG1172	Belongs to the binding-protein-dependent transport system permease family
PmCQ2_RS10095	COG1477	protein flavinylation
PmCQ2_RS10110	COG1230	cation diffusion facilitator family transporter
PmCQ2_RS10115	COG2271	Major facilitator Superfamily
PmCQ2_RS10125	COG2197	response regulator
PmCQ2_RS10130	COG2271	Major facilitator Superfamily
PmCQ2_RS10150	COG1309	transcriptional regulator
PmCQ2_RS10155	COG0583	DNA-binding transcription factor activity
PmCQ2_RS10160	COG0678	peroxiredoxin activity
PmCQ2_RS10160	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
PmCQ2_RS10170	COG0545	Peptidyl-prolyl cis-trans isomerase
PmCQ2_RS10175	COG2964	Protein conserved in bacteria
PmCQ2_RS10190	COG2168	tRNA wobble position uridine thiolation
PmCQ2_RS10215	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
PmCQ2_RS10235	COG1929	Belongs to the glycerate kinase type-1 family
PmCQ2_RS10240	COG2610	gluconate transmembrane transporter activity
PmCQ2_RS10275	COG3068	Protein conserved in bacteria
PmCQ2_RS10355	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PmCQ2_RS10360	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PmCQ2_RS10365	COG0006	proline dipeptidase activity
PmCQ2_RS10385	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PmCQ2_RS10400	COG1496	oxidoreductase activity
PmCQ2_RS10420	COG1737	Transcriptional regulator
PmCQ2_RS10425	COG2731	YhcH YjgK YiaL family protein
PmCQ2_RS10460	COG4232	protein-disulfide reductase activity
PmCQ2_RS10490	COG1011	Hydrolase
PmCQ2_RS10500	COG0697	spore germination
PmCQ2_RS10505	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PmCQ2_RS10525	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
PmCQ2_RS10535	COG0805	protein transport
PmCQ2_RS10575	COG1368	sulfuric ester hydrolase activity
PmCQ2_RS10580	COG3119	arylsulfatase activity
PmCQ2_RS10600	COG0641	radical SAM
PmCQ2_RS10605	COG1253	flavin adenine dinucleotide binding
PmCQ2_RS10615	COG0084	hydrolase, TatD family'
PmCQ2_RS10620	COG0470	DNA polymerase III
PmCQ2_RS10630	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
PmCQ2_RS10635	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PmCQ2_RS10645	COG0635	Involved in the biosynthesis of porphyrin-containing compound
PmCQ2_RS10665	COG1555	photosystem II stabilization
PmCQ2_RS10685	COG0196	riboflavin kinase activity
PmCQ2_RS10690	COG0728	peptidoglycan biosynthetic process
PmCQ2_RS10710	COG0560	Phosphoserine phosphatase
PmCQ2_RS10730	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
PmCQ2_RS10730	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
PmCQ2_RS10740	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PmCQ2_RS10750	COG2376	Dihydroxyacetone kinase
PmCQ2_RS10755	COG1461	Dihydroxyacetone kinase
PmCQ2_RS10765	COG2390	Transcriptional regulator
PmCQ2_RS10770	COG0698	ribose 5-phosphate isomerase
PmCQ2_RS10775	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PmCQ2_RS10785	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
PmCQ2_RS10810	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PmCQ2_RS10840	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PmCQ2_RS10845	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
PmCQ2_RS10860	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PmCQ2_RS10865	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
PmCQ2_RS10870	COG4972	Pilus assembly protein
PmCQ2_RS10890	COG4796	Type ii and iii secretion system protein
PmCQ2_RS10905	COG0338	D12 class N6 adenine-specific DNA methyltransferase
PmCQ2_RS10910	COG4701	Protein of unknown function (DUF721)
PmCQ2_RS10925	COG0494	nUDIX hydrolase
PmCQ2_RS10935	COG1466	dna polymerase III delta subunit
PmCQ2_RS10940	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
PmCQ2_RS10960	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
PmCQ2_RS10970	COG2608	mercury ion transmembrane transporter activity
PmCQ2_RS10980	COG1305	Transglutaminase-like
PmCQ2_RS10995	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PmCQ2_RS11030	COG3586	endonuclease activity
PmCQ2_RS11070	COG2226	methyltransferase
PmCQ2_RS11080	COG0814	amino acid
PmCQ2_RS11090	COG4783	chaperone-mediated protein folding
PmCQ2_RS11105	COG0848	biopolymer transport protein
PmCQ2_RS11110	COG0811	peptide transport
PmCQ2_RS11115	COG4536	flavin adenine dinucleotide binding
PmCQ2_RS11120	COG4137	Cytochrome C assembly protein
PmCQ2_RS11125	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PmCQ2_RS11175	COG1217	gtp-binding protein TYPA
PmCQ2_RS11180	COG3739	integral membrane protein
PmCQ2_RS11190	COG1720	tRNA m6t6A37 methyltransferase activity
PmCQ2_RS11195	COG1575	Belongs to the MenA family. Type 1 subfamily
PmCQ2_RS11205	COG0471	metal ion transport